Citrus Sinensis ID: 015668

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
Protein Sequence
MATAKRELELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEQIMFCL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccEEcccccEEEEccccccccEEccEEEcccccccEEEEEEEEEEcccccccccccccccEEEEEEEcccccccccccccccEEEcccccEEEcccccccccccccccEEEEEEEcccccccEEEEEEcccccccEEcccccccccccccccHHccccccccEEEEEEccEEEEEEEcccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHcccccEEEEccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHcccccccEEEEEEEEccHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHccccccccccccccHHHHccccccccccccccccccccEEEEcccccccEEEEccccccccccccccHHHHHHcccccccccccEEEEEEEEEEEccccccccccccccEEEEEEEcccccccccccccccccccccccEcccccccccccccccccEEEEEEEcccccEEEEEEEEccccccEEEEEccccccccccccccHHHHcccccccEEEEEcEEEEEEcccccccccccccEEEEccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHccccEEEEEccHHHHHHHccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHcccccccEEEEEEEccHHHHHHHHHHHHHHcccccEEEEc
Coil and Loop (DISEMBL)
matakrelelpdgdkpesvvkkakvddpvsdssasgprsqkqrvvlnpadcdldfdiednglkssglhqegfaycwsgaranvginggkycfgckivstqpvdmedtppdqqhvcrvgtsrgddpvgklgeteqsfgfggtgkfshggnflnfgekfgvgDTIICAIdleskplatigfakngkwlgtakqfdagsnglgvvdsavkerqcesavfphiLLKNVVVVMQFSVeqglipvegYKSWVSAlddgnsvlgptfcnmkdCEVMMMvglpasgkttwAEKWvkdhpekrYILLGTNLILEQmkvpgllrkhnYSERFQCLMGRANAIFDVLLSrasrtprnfiidqTNVFKSARKRKLRLFVNFRKIAVvvfpkpedlkIRSVKRFKEMGKEQIMFCL
Flexible Loop (DISEMBL)
matakrelelpdgdkpesvvkkakvddpvsdssasgprsqkqrvVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAsrtprnfiidqtnvfksarKRKLRLFVnfrkiavvvfpkpedlkirsvKRFKEMGKEQIMFCL
Low Complexity Region (SEG)
MATAKRELELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSfgfggtgkfshggnfLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEQIMFCL
Disordered region (IsUnstruct)
********************************************VLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVST************************************FGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKR*************
Disordered Region (DISOPRED)
****************************************KQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVEGYKSWV************************MVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV**********ERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPE***************EQIMFCL
Disordered Region (DISEMBL)
*****************************************QRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEQIMFCL
Disordered Region (DISPRO)
***************************************QKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEQIMFCL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATAKRELELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEQIMFCL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	403	2.2.26 [Sep-21-2011]
Q8VDM6	859	Heterogeneous nuclear rib	yes	no	0.836	0.392	0.395	3e-63
Q9BUJ2	856	Heterogeneous nuclear rib	no	no	0.836	0.393	0.392	5e-63
Q00839	825	Heterogeneous nuclear rib	no	no	0.838	0.409	0.356	6e-49
Q8VEK3	800	Heterogeneous nuclear rib	no	no	0.838	0.422	0.353	1e-48
Q00PI9	745	Heterogeneous nuclear rib	no	no	0.779	0.421	0.351	1e-46
Q1KMD3	747	Heterogeneous nuclear rib	no	no	0.779	0.420	0.348	9e-46
Q55CP6	765	Probable ATP-dependent RN	yes	no	0.394	0.207	0.260	2e-09
Q5XH91	740	ATP-dependent RNA helicas	no	no	0.429	0.233	0.320	4e-07
A2VD92	740	ATP-dependent RNA helicas	N/A	no	0.429	0.233	0.316	4e-06
Q90WU3	740	ATP-dependent RNA helicas	no	no	0.496	0.270	0.308	2e-05

>sp|Q8VDM6|HNRL1_MOUSE Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Mus musculus GN=Hnrnpul1 PE=1 SV=1

 Score =  243 bits (619), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 142/359 (39%), Positives = 201/359 (55%), Gaps = 22/359 (6%)

Query: 44  VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPV- 102
           V ++  +CDL F +  +      L  EGFAY WSGARA+ G+  G+ CF  KI     V 
Sbjct: 212 VAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVK 271

Query: 103 DMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDT 162
            +  T PD  HV R+G S  D    +LGE   S+G+GGTGK S    F N+G+KF   D 
Sbjct: 272 HLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDV 329

Query: 163 IICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK 222
           I C  D E      + F KNGKW+G A  F      LG             A++PH+L+K
Sbjct: 330 IGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALGG-----------QALYPHVLVK 376

Query: 223 NVVVVMQFSVEQ----GLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASG 278
           N  V   F         ++P   +   +   +     +GP   +  +CE++MMVGLPA+G
Sbjct: 377 NCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTIGPK--SKAECEILMMVGLPAAG 434

Query: 279 KTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLS 338
           KTTWA K    +P K+Y +LGTN I+++M+V GL R+ NY+ R+  L+ +A    + L+ 
Sbjct: 435 KTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQ 494

Query: 339 RASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
            A+R  RN+I+DQTNV+ SA++RK+R F  F++ A+V+ P  EDLK R+VKR  E GK+
Sbjct: 495 IAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTVKRTDEEGKD 553

Acts as a basic transcriptional regulator. Represses basic transcription driven by several virus and cellular promoters. When associated with BRD7, activates transcription of glucocorticoid-responsive promoter in the absence of ligand-stimulation. Plays also a role in mRNA processing and transport. Binds avidly to poly(G) and poly(C) RNA homopolymers in vitro.
Mus musculus (taxid: 10090)

>sp|Q9BUJ2|HNRL1_HUMAN Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Homo sapiens GN=HNRNPUL1 PE=1 SV=2

 Score =  241 bits (616), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 141/359 (39%), Positives = 201/359 (55%), Gaps = 22/359 (6%)

Query: 44  VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPV- 102
           V ++  +CDL F +  +      L  EGFAY WSGARA+ G+  G+ CF  KI     V 
Sbjct: 211 VAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVK 270

Query: 103 DMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDT 162
            +  T PD  HV R+G S  D    +LGE   S+G+GGTGK S    F N+G+KF   D 
Sbjct: 271 HLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDV 328

Query: 163 IICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK 222
           I C  D E      + F KNGKW+G A  F      LG             A++PH+L+K
Sbjct: 329 IGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALGG-----------QALYPHVLVK 375

Query: 223 NVVVVMQFSVEQ----GLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASG 278
           N  V   F         ++P   +   +   +     +GP   +  +CE++MMVGLPA+G
Sbjct: 376 NCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPK--SKAECEILMMVGLPAAG 433

Query: 279 KTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLS 338
           KTTWA K    +P K+Y +LGTN I+++M+V GL R+ NY+ R+  L+ +A    + L+ 
Sbjct: 434 KTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQ 493

Query: 339 RASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
            A+R  RN+I+DQTNV+ SA++RK+R F  F++ A+V+ P  EDLK R++KR  E GK+
Sbjct: 494 IAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKD 552

Acts as a basic transcriptional regulator. Represses basic transcription driven by several virus and cellular promoters. When associated with BRD7, activates transcription of glucocorticoid-responsive promoter in the absence of ligand-stimulation. Plays also a role in mRNA processing and transport. Binds avidly to poly(G) and poly(C) RNA homopolymers in vitro.

Homo sapiens (taxid: 9606)

>sp|Q00839|HNRPU_HUMAN Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6

 Score =  195 bits (495), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 127/356 (35%), Positives = 186/356 (52%), Gaps = 18/356 (5%)

Query: 44  VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
           V L+  +CDL F I  + L +S L  E FA+ W+G RA+ G++ GK CF  K+    PV 
Sbjct: 288 VCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVR 347

Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
              T     H  R+G S     +  LGE E S+G+   G  +      ++GEKF   D I
Sbjct: 348 HLYTKDIDIHEVRIGWSLTTSGM-LLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVI 406

Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
            C  + ES  +  + +AKNG+ LG A +               KE      +FPH+L  N
Sbjct: 407 TCFANFESDEV-ELSYAKNGQDLGVAFKIS-------------KEVLAGRPLFPHVLCHN 452

Query: 224 VVVVMQF-SVEQGLIPVEGYKSWVSALDDGNSVLGPTFCN-MKDCEVMMMVGLPASGKTT 281
             V   F   E+   P+    +++  +   + V GP      KDCEV+MM+GLP +GKTT
Sbjct: 453 CAVEFNFGQKEKPYFPIPEEYTFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTT 512

Query: 282 WAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341
           W  K   ++P K Y +LGTN I+++M V G  ++   + +   L+ RA       +  A+
Sbjct: 513 WVTKHAAENPGK-YNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKFIEIAA 571

Query: 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
           R  RNFI+DQTNV  +A++RK+ LF  F++ AVVV PK ED K R+ K+ +  GK+
Sbjct: 572 RKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKD 627

Component of the CRD-mediated complex that promotes MYC mRNA stabilization. Binds to pre-mRNA. Has high affinity for scaffold-attached region (SAR) DNA. Binds to double- and single-stranded DNA and RNA.

Homo sapiens (taxid: 9606)

>sp|Q8VEK3|HNRPU_MOUSE Heterogeneous nuclear ribonucleoprotein U OS=Mus musculus GN=Hnrnpu PE=1 SV=1

 Score =  194 bits (493), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 126/356 (35%), Positives = 187/356 (52%), Gaps = 18/356 (5%)

Query: 44  VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
           V L+  +CDL F I  + L +S L  E FA+ W+G RA+ G++ GK CF  K+    PV 
Sbjct: 264 VCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVR 323

Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
              T     H  R+G S     +  LGE E S+G+   G  +      ++GEKF   D I
Sbjct: 324 HLYTKDIDIHEVRIGWSLTTSGM-LLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVI 382

Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
            C  + E+  +  + +AKNG+ LG A +               KE   +  +FPH+L  N
Sbjct: 383 TCFANFETDEV-ELSYAKNGQDLGVAFKIS-------------KEVLADRPLFPHVLCHN 428

Query: 224 VVVVMQF-SVEQGLIPVEGYKSWVSALDDGNSVLGPTFCN-MKDCEVMMMVGLPASGKTT 281
             V   F   E+   P+    +++  +   + V GP      KDCEV+MM+GLP +GKTT
Sbjct: 429 CAVEFNFGQKEKPYFPIPEDCTFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTT 488

Query: 282 WAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341
           W  K   ++P K Y +LGTN I+++M V G  ++   + +   L+ RA       +  A+
Sbjct: 489 WVTKHAAENPGK-YNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKFIEIAA 547

Query: 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
           R  RNFI+DQTNV  +A++RK+ LF  F++ AVVV PK ED K R+ K+ +  GK+
Sbjct: 548 RKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKD 603

Component of the CRD-mediated complex that promotes MYC mRNA stabilization. Binds to pre-mRNA. Has high affinity for scaffold-attached region (SAR) DNA. Binds to double- and single-stranded DNA and RNA.

Mus musculus (taxid: 10090)

>sp|Q00PI9|HNRL2_MOUSE Heterogeneous nuclear ribonucleoprotein U-like protein 2 OS=Mus musculus GN=Hnrnpul2 PE=1 SV=2

 Score =  187 bits (476), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 178/356 (50%), Gaps = 42/356 (11%)

Query: 44  VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
           V L+    DL F I  +      L  E F   WSGAR+  G+  GK CF  K+    P+ 
Sbjct: 244 VNLDTYTSDLHFQISKDRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMK 303

Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
              T   +  + RVG S  D    +LGE E S+GF G G  +  G F  FG+ FG  D I
Sbjct: 304 EGCT---EVSLLRVGWSV-DFSCSQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVI 359

Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
            C  + E++ +  + F+KNG+ LG A +               KE   + A+ PH+L KN
Sbjct: 360 GCFANFETEEV-ELSFSKNGEDLGVAFRIS-------------KESLADRALLPHVLCKN 405

Query: 224 VVVVMQFSVEQG-------------LIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMM 270
            VV + F  ++               +PVE         +   + + P    +++CEV++
Sbjct: 406 CVVELNFGQKEEPFFPPPEEFVFIHAVPVE---------ERVRTAVPPK--TIEECEVIL 454

Query: 271 MVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRAN 330
           MVGLP SGKT WA K+ KD+PE+RY +LG   +L QM++ GL       +    L+ +A+
Sbjct: 455 MVGLPGSGKTQWALKYAKDNPERRYNVLGAETVLTQMRMKGLEEPEMDPKSRDLLVQQAS 514

Query: 331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIR 386
                L+  ASR+ RNFI+DQ NV+ S ++RKL LF  F +  VVV P  ED K R
Sbjct: 515 QCLSKLVQIASRSKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDWKRR 570

Mus musculus (taxid: 10090)

>sp|Q1KMD3|HNRL2_HUMAN Heterogeneous nuclear ribonucleoprotein U-like protein 2 OS=Homo sapiens GN=HNRNPUL2 PE=1 SV=1

 Score =  184 bits (467), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 124/356 (34%), Positives = 179/356 (50%), Gaps = 42/356 (11%)

Query: 44  VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
           V L+    DL F +  +      L  E F   WSGAR+  G+  GK CF  K+    P+ 
Sbjct: 246 VNLDTYTSDLHFQVSKDRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMK 305

Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
              T   +  + RVG S  D    +LGE E S+GF G G  +  G F  FG+ FG  D I
Sbjct: 306 EGCT---EVSLLRVGWSV-DFSRPQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVI 361

Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
            C  + E++ +  + F+KNG+ LG A           +   ++ +R    A+ PH+L KN
Sbjct: 362 GCFANFETEEV-ELSFSKNGEDLGVA---------FWISKDSLADR----ALLPHVLCKN 407

Query: 224 VVVVMQFSVEQG-------------LIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMM 270
            VV + F  ++               +PVE         +   + + P    +++CEV++
Sbjct: 408 CVVELNFGQKEEPFFPPPEEFVFIHAVPVE---------ERVRTAVPPK--TIEECEVIL 456

Query: 271 MVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRAN 330
           MVGLP SGKT WA K+ K++PEKRY +LG   +L QM++ GL       +    L+ +A+
Sbjct: 457 MVGLPGSGKTQWALKYAKENPEKRYNVLGAETVLNQMRMKGLEEPEMDPKSRDLLVQQAS 516

Query: 331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIR 386
                L+  ASRT RNFI+DQ NV+ S ++RKL LF  F +  VVV P  ED K R
Sbjct: 517 QCLSKLVQIASRTKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDWKKR 572

Homo sapiens (taxid: 9606)

>sp|Q55CP6|DDX1_DICDI Probable ATP-dependent RNA helicase ddx1 OS=Dictyostelium discoideum GN=ddx1 PE=3 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 33/192 (17%)

Query: 52  DLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQ 111
           +LD    D  +   GL  +  +  W G +A  GI+ GK+ +             ++    
Sbjct: 102 ELDQIDRDKNMAVDGLICQSRSSDWCGIKATKGISSGKFYY-------------ESIVRD 148

Query: 112 QHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLES 171
           + +CR+G +        +G  + S+G+GGTGK SH   F+++G+ FG  D I C I+ + 
Sbjct: 149 EGLCRIGFALKKSS-RNIGTDKFSWGYGGTGKKSHESKFIDYGKPFGNNDVIGCYINFDE 207

Query: 172 KPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFS 231
           +    IGF KNG+  G A  F++ +                   +P ++LKN  +   F 
Sbjct: 208 E---IIGFTKNGQDFGEAFTFNSKA----------------GIFYPALVLKNAEMEFNFG 248

Query: 232 VEQGLIPVEGYK 243
            +     ++GYK
Sbjct: 249 SKPMKHDLKGYK 260

Acts as an ATP-dependent RNA helicase, able to unwind both RNA-RNA and RNA-DNA duplexes. Possesses 5' single-stranded RNA overhang nuclease activity.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q5XH91|DDX1_XENTR ATP-dependent RNA helicase DDX1 OS=Xenopus tropicalis GN=ddx1 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 94/212 (44%), Gaps = 39/212 (18%)

Query: 46  LNPADCDLDFDIEDNGL--KSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
           +NP D    F I  +GL  +S  + +      W G R+  G+N GKY +           
Sbjct: 93  MNPYDRGSSFAIGSDGLCCQSREIKE------WHGCRSTRGVNKGKYYY----------- 135

Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
             +     Q +CRVG S     +  LG  +  FGFGGTGK SH   F N+GE+F + DTI
Sbjct: 136 --EVSCHDQGLCRVGWSTLQASL-DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTI 192

Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
            C ID+++    T+ ++KNGK LG A Q  A                   AVF   +LKN
Sbjct: 193 GCYIDIDN---GTVKYSKNGKDLGLAFQIPAHLKN--------------QAVFASCVLKN 235

Query: 224 VVVVMQFSVEQGLIPVEGYKSWVSALDDGNSV 255
             +   F  E    P +     +S   DG+ V
Sbjct: 236 AELKFNFGEEDFKFPPKDGFVALSKAPDGHVV 267

Acts as an ATP-dependent RNA helicase, able to unwind both RNA-RNA and RNA-DNA duplexes. Possesses 5' single-stranded RNA overhang nuclease activity. Acts as a positive regulator of transcription. May be involved in 3'-end cleavage and polyadenylation of pre-mRNAs. Binds DNA and RNA.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|A2VD92|DDX1_XENLA ATP-dependent RNA helicase DDX1 OS=Xenopus laevis GN=ddx1 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 97/212 (45%), Gaps = 39/212 (18%)

Query: 46  LNPADCDLDFDIEDNGL--KSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
           +NP D    F I  +GL  +S  + +      W G R+  G+N GKY +           
Sbjct: 93  MNPYDRGSAFAIGSDGLCCQSREIKE------WHGCRSTRGVNKGKYYY----------- 135

Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
             +     Q +CRVG S     +  LG  +  FGFGGTGK SH   F N+GE+F + DTI
Sbjct: 136 --EVSCHDQGLCRVGWSTLSASL-DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTI 192

Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
            C +D+++   + + F+KNGK LG A Q          + S +K +    A F   +LKN
Sbjct: 193 GCYLDIDN---SIVKFSKNGKDLGLAFQ----------IPSHMKNQ----AFFTSCVLKN 235

Query: 224 VVVVMQFSVEQGLIPVEGYKSWVSALDDGNSV 255
             +   F  E    P +     +S   DG+ V
Sbjct: 236 AELKFNFGEEDFKFPPKDGFVALSKAPDGHVV 267

Acts as an ATP-dependent RNA helicase, able to unwind both RNA-RNA and RNA-DNA duplexes. Possesses 5' single-stranded RNA overhang nuclease activity. Acts as a positive regulator of transcription. May be involved in 3'-end cleavage and polyadenylation of pre-mRNAs. Binds DNA and RNA.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q90WU3|DDX1_CHICK ATP-dependent RNA helicase DDX1 OS=Gallus gallus GN=DDX1 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 98/240 (40%), Gaps = 40/240 (16%)

Query: 46  LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105
           +NP D    F I  +GL      Q      W G RA  G+  GKY +             
Sbjct: 93  MNPYDRGSAFAIGSDGLCC----QSREVKEWHGCRATRGVTKGKYYY------------- 135

Query: 106 DTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIIC 165
           +     Q +CRVG S     +  LG  +  FGFGGTGK SH   F ++GE+F + DTI C
Sbjct: 136 EVSCHDQGLCRVGWSTMQASL-DLGTDKFGFGFGGTGKKSHNKQFDSYGEEFTMHDTIGC 194

Query: 166 AIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVV 225
            +D++      I F+KNGK LG A +F                     A+F   +LKN  
Sbjct: 195 YLDIDK---GQIKFSKNGKDLGLAFEFPPHIRN--------------QALFAACVLKNAE 237

Query: 226 VVMQFSVEQ-GLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAE 284
           +   F  E     P +GY     A  DGN V      N    +V+    LP + K    E
Sbjct: 238 LKFNFGEEDFKFPPKDGYIGLCKA-PDGNVVKSQHTGN---AQVVQTQNLPNAPKALIVE 293

Acts as an ATP-dependent RNA helicase, able to unwind both RNA-RNA and RNA-DNA duplexes. Possesses 5' single-stranded RNA overhang nuclease activity. Acts as a positive regulator of transcription. May be involved in 3'-end cleavage and polyadenylation of pre-mRNAs. Binds DNA and RNA.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
302144182	703	unnamed protein product [Vitis vinifera]	0.962	0.551	0.707	1e-168
359495485	590	PREDICTED: heterogeneous nuclear ribonuc	0.962	0.657	0.707	1e-167
147827160	1021	hypothetical protein VITISV_016567 [Viti	0.962	0.380	0.707	1e-167
359495491	514	PREDICTED: heterogeneous nuclear ribonuc	0.962	0.754	0.707	1e-167
302144178	1459	unnamed protein product [Vitis vinifera]	0.923	0.254	0.685	1e-158
449457692	595	PREDICTED: heterogeneous nuclear ribonuc	0.888	0.601	0.715	1e-157
449488411	595	PREDICTED: heterogeneous nuclear ribonuc	0.962	0.652	0.662	1e-156
90265186	717	H0410G08.12 [Oryza sativa Indica Group]	0.895	0.503	0.685	1e-150
356557660	517	PREDICTED: heterogeneous nuclear ribonuc	0.875	0.682	0.708	1e-150
414585252	882	TPA: putative SPRY-domain family protein	0.945	0.431	0.640	1e-148

>gi|302144182|emb|CBI23309.3| unnamed protein product [Vitis vinifera]

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 281/397 (70%), Positives = 329/397 (82%), Gaps = 9/397 (2%)

Query: 1   MATAKRELELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDN 60
           MA+ KR+L  P+  +PES   KA + D       S     KQRVVLNPADCDLDF+I  +
Sbjct: 1   MASIKRQLSEPE--EPESKKPKAVLSD-------SPEHKTKQRVVLNPADCDLDFNIVGD 51

Query: 61  GLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS 120
           GL+ S LH  GFAYCWSGAR NVGI GGKYCFGCKI+STQPVDMEDTPPDQQHVCR+G S
Sbjct: 52  GLQGSALHDHGFAYCWSGARGNVGITGGKYCFGCKIISTQPVDMEDTPPDQQHVCRLGIS 111

Query: 121 RGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFA 180
           RGDD VG LGETE SFGFGGTGKFS  G F N+GEKFGVGDTI+CA++LE+KPLA+I F+
Sbjct: 112 RGDDAVGNLGETEHSFGFGGTGKFSVAGKFSNYGEKFGVGDTIVCAVNLETKPLASISFS 171

Query: 181 KNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVE 240
           KNGKWLG AK+FDAG  GLGVVDS +++   ESA+FPH+LLKNV+V +QFS E+GL+P E
Sbjct: 172 KNGKWLGVAKEFDAGVKGLGVVDSPMRQLHWESALFPHVLLKNVMVQVQFSTEEGLVPEE 231

Query: 241 GYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300
           GYK W SAL DGN+++GP+F + +DCEVMMMVGLPASGK+TWAEKWVK+H EKRY+LLGT
Sbjct: 232 GYKPWASALYDGNAIMGPSFSSPRDCEVMMMVGLPASGKSTWAEKWVKEHAEKRYVLLGT 291

Query: 301 NLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARK 360
           NL L+QMKVPGLLRK NY ERF+ LM RA  IF+ LLSRAS+TP N+IIDQTNV+K+ARK
Sbjct: 292 NLALDQMKVPGLLRKQNYGERFERLMDRATGIFNTLLSRASKTPHNYIIDQTNVYKNARK 351

Query: 361 RKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
           RKL+ F NF+KIAVV+FPKPE+LK R+ KRFKEMGKE
Sbjct: 352 RKLKPFANFQKIAVVLFPKPEELKFRAEKRFKEMGKE 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495485|ref|XP_002271342.2| PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1-like [Vitis vinifera]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 281/397 (70%), Positives = 329/397 (82%), Gaps = 9/397 (2%)

Query: 1   MATAKRELELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDN 60
           MA+ KR+L  P+  +PES   KA + D       S     KQRVVLNPADCDLDF+I  +
Sbjct: 148 MASIKRQLSEPE--EPESKKPKAALSD-------SPEHKTKQRVVLNPADCDLDFNIVGD 198

Query: 61  GLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS 120
           GL+ S LH  GFAYCWSGAR NVGI GGKYCFGCKI+STQPVDMEDTPPDQQHVCR+G S
Sbjct: 199 GLQGSALHDHGFAYCWSGARGNVGITGGKYCFGCKIISTQPVDMEDTPPDQQHVCRLGIS 258

Query: 121 RGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFA 180
           RGDD VG LGETE SFGFGGTGKFS  G F N+GEKFGVGDTI+CA++LE+KPLA+I F+
Sbjct: 259 RGDDAVGNLGETEHSFGFGGTGKFSVAGKFSNYGEKFGVGDTIVCAVNLETKPLASISFS 318

Query: 181 KNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVE 240
           KNGKWLG AK+FDAG  GLGVVDS +++   ESA+FPH+LLKNV+V +QFS E+GL+P E
Sbjct: 319 KNGKWLGVAKEFDAGVKGLGVVDSPMRQLHWESALFPHVLLKNVMVQVQFSTEEGLVPEE 378

Query: 241 GYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300
           GYK W SAL DGN+++GP+F + +DCEVMMMVGLPASGK+TWAEKWVK+H EKRY+LLGT
Sbjct: 379 GYKPWASALYDGNAIMGPSFSSPRDCEVMMMVGLPASGKSTWAEKWVKEHAEKRYVLLGT 438

Query: 301 NLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARK 360
           NL L+QMKVPGLLRK NY ERF+ LM RA  IF+ LLSRAS+TP N+IIDQTNV+K+ARK
Sbjct: 439 NLALDQMKVPGLLRKQNYGERFERLMDRATGIFNTLLSRASKTPHNYIIDQTNVYKNARK 498

Query: 361 RKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
           RKL+ F NF+KIAVV+FPKPE+LK R+ KRFKEMGKE
Sbjct: 499 RKLKPFANFQKIAVVLFPKPEELKFRAEKRFKEMGKE 535

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147827160|emb|CAN66470.1| hypothetical protein VITISV_016567 [Vitis vinifera]

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 281/397 (70%), Positives = 329/397 (82%), Gaps = 9/397 (2%)

Query: 1   MATAKRELELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDN 60
           MA+ KR+L  P+  +PES   KA + D       S     KQRVVLNPADCDLDF+I  +
Sbjct: 168 MASIKRQLSEPE--EPESKKPKAALSD-------SPEHKTKQRVVLNPADCDLDFNIVGD 218

Query: 61  GLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS 120
           GL+ S LH  GFAYCWSGAR NVGI GGKYCFGCKI+STQPVDMEDTPPDQQHVCR+G S
Sbjct: 219 GLQGSALHDHGFAYCWSGARGNVGITGGKYCFGCKIISTQPVDMEDTPPDQQHVCRLGIS 278

Query: 121 RGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFA 180
           RGDD VG LGETE SFGFGGTGKFS  G F N+GEKFGVGDTI+CA++LE+KPLA+I F+
Sbjct: 279 RGDDAVGNLGETEHSFGFGGTGKFSVAGKFSNYGEKFGVGDTIVCAVNLETKPLASISFS 338

Query: 181 KNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVE 240
           KNGKWLG AK+FDAG  GLGVVDS +++   ESA+FPH+LLKNV+V +QFS E+GL+P E
Sbjct: 339 KNGKWLGVAKEFDAGVKGLGVVDSPMRQLHWESALFPHVLLKNVMVQVQFSTEEGLVPEE 398

Query: 241 GYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300
           GYK W SAL DGN+++GP+F + +DCEVMMMVGLPASGK+TWAEKWVK+H EKRY+LLGT
Sbjct: 399 GYKPWASALYDGNAIMGPSFSSPRDCEVMMMVGLPASGKSTWAEKWVKEHAEKRYVLLGT 458

Query: 301 NLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARK 360
           NL L+QMKVPGLLRK NY ERF+ LM RA  IF+ LLSRAS+TP N+IIDQTNV+K+ARK
Sbjct: 459 NLALDQMKVPGLLRKQNYGERFERLMDRATGIFNTLLSRASKTPHNYIIDQTNVYKNARK 518

Query: 361 RKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
           RKL+ F NF+KIAVV+FPKPE+LK R+ KRFKEMGKE
Sbjct: 519 RKLKPFANFQKIAVVLFPKPEELKFRAEKRFKEMGKE 555

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495491|ref|XP_003635003.1| PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1-like [Vitis vinifera]

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 281/397 (70%), Positives = 329/397 (82%), Gaps = 9/397 (2%)

Query: 1   MATAKRELELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDN 60
           MA+ KR+L  P+  +PES   KA + D       S     KQRVVLNPADCDLDF+I  +
Sbjct: 1   MASIKRQLSEPE--EPESKKPKAVLSD-------SPEHKTKQRVVLNPADCDLDFNIVGD 51

Query: 61  GLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS 120
           GL+ S LH  GFAYCWSGAR NVGI GGKYCFGCKI+STQPVDMEDTPPDQQHVCR+G S
Sbjct: 52  GLQGSALHDHGFAYCWSGARGNVGITGGKYCFGCKIISTQPVDMEDTPPDQQHVCRLGIS 111

Query: 121 RGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFA 180
           RGDD VG LGETE SFGFGGTGKFS  G F N+GEKFGVGDTI+CA++LE+KPLA+I F+
Sbjct: 112 RGDDAVGNLGETEHSFGFGGTGKFSVAGKFSNYGEKFGVGDTIVCAVNLETKPLASISFS 171

Query: 181 KNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVE 240
           KNGKWLG AK+FDAG  GLGVVDS +++   ESA+FPH+LLKNV+V +QFS E+GL+P E
Sbjct: 172 KNGKWLGVAKEFDAGVKGLGVVDSPMRQLHWESALFPHVLLKNVMVQVQFSTEEGLVPEE 231

Query: 241 GYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300
           GYK W SAL DGN+++GP+F + +DCEVMMMVGLPASGK+TWAEKWVK+H EKRY+LLGT
Sbjct: 232 GYKPWASALYDGNAIMGPSFSSPRDCEVMMMVGLPASGKSTWAEKWVKEHAEKRYVLLGT 291

Query: 301 NLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARK 360
           NL L+QMKVPGLLRK NY ERF+ LM RA  IF+ LLSRAS+TP N+IIDQTNV+K+ARK
Sbjct: 292 NLALDQMKVPGLLRKQNYGERFERLMDRATGIFNTLLSRASKTPHNYIIDQTNVYKNARK 351

Query: 361 RKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
           RKL+ F NF+KIAVV+FPKPE+LK R+ KRFKEMGKE
Sbjct: 352 RKLKPFANFQKIAVVLFPKPEELKFRAEKRFKEMGKE 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302144178|emb|CBI23305.3| unnamed protein product [Vitis vinifera]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 272/397 (68%), Positives = 317/397 (79%), Gaps = 25/397 (6%)

Query: 1   MATAKRELELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDN 60
           MA+ KR+L  P+  +PES   KA + D       S     KQRVVLNPADCDLDF+I  +
Sbjct: 9   MASIKRQLSEPE--EPESKKPKAALSD-------SPEHKTKQRVVLNPADCDLDFNIVGD 59

Query: 61  GLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS 120
           GL+ S LH  GFAYCWSGAR NVGI GGKYCFGCKI+STQPVDMEDTPPDQQHVCR+G S
Sbjct: 60  GLQGSALHDHGFAYCWSGARGNVGITGGKYCFGCKIISTQPVDMEDTPPDQQHVCRLGIS 119

Query: 121 RGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFA 180
           RGDD VG LGETE SFGFGGTGKFS  G F N+GEKFGVGDTI+CA++LE+KPLA+I F+
Sbjct: 120 RGDDAVGNLGETEHSFGFGGTGKFSVAGKFSNYGEKFGVGDTIVCAVNLETKPLASISFS 179

Query: 181 KNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVE 240
           KNGKWLG AK+FDAG                  A+FPH+LLKNV+V +QFS E+GL+P E
Sbjct: 180 KNGKWLGVAKEFDAGVK----------------ALFPHVLLKNVMVQVQFSTEEGLVPEE 223

Query: 241 GYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300
           GYK W SAL DGN+++GP+F + +DCEVMMMVGLPASGK+TWAEKWVK+H EKRY+LLGT
Sbjct: 224 GYKPWASALYDGNAIMGPSFSSPRDCEVMMMVGLPASGKSTWAEKWVKEHAEKRYVLLGT 283

Query: 301 NLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARK 360
           NL L+QMKVPGLLRK NY ERF+ LM RA  IF+ LLSRAS+TP N+IIDQTNV+K+ARK
Sbjct: 284 NLALDQMKVPGLLRKQNYGERFERLMDRATGIFNTLLSRASKTPHNYIIDQTNVYKNARK 343

Query: 361 RKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
           RKL+ F NF+KIAVV+FPKPE+LK R+ KRFKEMGKE
Sbjct: 344 RKLKPFANFQKIAVVLFPKPEELKFRAEKRFKEMGKE 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457692|ref|XP_004146582.1| PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1-like [Cucumis sativus]

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 256/358 (71%), Positives = 309/358 (86%)

Query: 40  QKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVST 99
           ++Q VVLNPADCDLDF+I+ +GL+ S L+++GFAYCWSGAR  VGI GGKYCFGCKI+S 
Sbjct: 31  KQQPVVLNPADCDLDFEIKSDGLQGSALYEKGFAYCWSGARTTVGITGGKYCFGCKIISL 90

Query: 100 QPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGV 159
           QPV+M DT PDQQH+CRVG SRGD PVG LGET QSFGFGGTGKFS+ G F ++GEKFG 
Sbjct: 91  QPVEMSDTAPDQQHLCRVGISRGDSPVGNLGETIQSFGFGGTGKFSNAGKFSDYGEKFGF 150

Query: 160 GDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHI 219
           GD+I+CA++LESKPLA+IGF+KNGKWLGT+ QFDAG  GLGVVDS +++ + ESA FPH+
Sbjct: 151 GDSIVCAVNLESKPLASIGFSKNGKWLGTSIQFDAGPRGLGVVDSPLRKCRWESAFFPHV 210

Query: 220 LLKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGK 279
           LLKNV V +QFS+E+GL+P EG+K W  ALDD N++LGPTF N++DCEVMMMVGLPASGK
Sbjct: 211 LLKNVEVQLQFSIEEGLVPEEGFKPWACALDDNNALLGPTFNNVRDCEVMMMVGLPASGK 270

Query: 280 TTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSR 339
           +TWA+KW  DHPEKR ILLGTNLIL+QMK+PGLLRKHNY ERF  LM +A  IF++LLSR
Sbjct: 271 STWAKKWADDHPEKRQILLGTNLILDQMKLPGLLRKHNYGERFDRLMDQATEIFNILLSR 330

Query: 340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
           A+  PRN+IIDQTNV+K ARKRKL+ F +F+KIAVVVFPKPE+L+ RS +RF+EMGKE
Sbjct: 331 AAAVPRNYIIDQTNVYKHARKRKLKPFADFQKIAVVVFPKPEELQRRSAERFREMGKE 388

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449488411|ref|XP_004158025.1| PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1-like [Cucumis sativus]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 263/397 (66%), Positives = 323/397 (81%), Gaps = 9/397 (2%)

Query: 1   MATAKRELELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDN 60
           MA+ +  L+  D +  E   K A+V D            ++Q V+LNPADCDLDF+I+ +
Sbjct: 1   MASKRHRLQEDDYEAKEP--KNARVSDAFE-------FKKQQPVMLNPADCDLDFEIKSD 51

Query: 61  GLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS 120
           GL+ S L+++GFAYCWSGAR  VGI GGKYCFGCKI+S QPV+M DT PDQQH+CRVG S
Sbjct: 52  GLQGSALYEKGFAYCWSGARTTVGITGGKYCFGCKIISLQPVEMSDTAPDQQHLCRVGIS 111

Query: 121 RGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFA 180
           RGD P+G LGET QSFGFGGTGKFS+ G F ++GEKFG GD+I+CA++LESKPLA+IGF+
Sbjct: 112 RGDSPLGNLGETIQSFGFGGTGKFSNAGKFSDYGEKFGFGDSIVCAVNLESKPLASIGFS 171

Query: 181 KNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVE 240
           KNGKWLGT+ QFDAG  GLGVVDS +++ + ESA FPH+LLKNV V +QFS+E+GL+P E
Sbjct: 172 KNGKWLGTSIQFDAGPRGLGVVDSPLRKCRWESAFFPHVLLKNVEVQLQFSIEEGLVPEE 231

Query: 241 GYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300
           G+K W  ALDD N++LGPTF N++DCEVMMMVGLPASGK+TWA+KW  DHPEKR ILLGT
Sbjct: 232 GFKPWACALDDNNALLGPTFNNVRDCEVMMMVGLPASGKSTWAKKWADDHPEKRQILLGT 291

Query: 301 NLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARK 360
           NLIL+QMK+PGLLRKHNY ERF  LM +A  IF++LLSRA+  PRN+IIDQTNV+K ARK
Sbjct: 292 NLILDQMKLPGLLRKHNYGERFDRLMDQATEIFNILLSRAAAVPRNYIIDQTNVYKHARK 351

Query: 361 RKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
           RKL+ F +F+KIAVVVFPKPE+L+ RS +RF+EMGKE
Sbjct: 352 RKLKPFADFQKIAVVVFPKPEELQRRSAERFREMGKE 388

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90265186|emb|CAH67657.1| H0410G08.12 [Oryza sativa Indica Group]

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 248/362 (68%), Positives = 292/362 (80%), Gaps = 1/362 (0%)

Query: 37  PRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGG-KYCFGCK 95
           P  Q  RV LNPADCDLDFD+   GL+   LH  GFAYCWSGARA VG+ GG KYCFGCK
Sbjct: 28  PEPQPARVGLNPADCDLDFDVGGGGLRGEALHDGGFAYCWSGARATVGVRGGGKYCFGCK 87

Query: 96  IVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGE 155
           +V+ Q V+MEDT  DQQH+CRVG SRG DPVG LGET  SFGFGGTGKFSH G F+ +G 
Sbjct: 88  VVAEQAVEMEDTAADQQHLCRVGVSRGGDPVGALGETGHSFGFGGTGKFSHQGKFVEYGV 147

Query: 156 KFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAV 215
           KFGVGDT++CA+DL+SKPLA+IGF++NG+WLG AK FDA   GLG+V+S V   Q ESA+
Sbjct: 148 KFGVGDTVVCAVDLDSKPLASIGFSRNGEWLGIAKHFDASDKGLGLVESPVSSMQWESAI 207

Query: 216 FPHILLKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLP 275
           FPH+LLKNVVV MQFS E GL  V+GY+ W SA  DGN+V GP F   K+CE+MMMVGLP
Sbjct: 208 FPHVLLKNVVVEMQFSKEDGLQLVDGYEPWPSACVDGNAVSGPVFAEQKECEIMMMVGLP 267

Query: 276 ASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDV 335
           ASGK+TWAEKW+K+H EKR+ILLGTNL L QMKVPGLLRK+NY ERF+ LM RA  IF+ 
Sbjct: 268 ASGKSTWAEKWIKEHKEKRFILLGTNLALVQMKVPGLLRKNNYGERFERLMDRATMIFNT 327

Query: 336 LLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMG 395
           LL+RA++ PRN+IIDQTNV+K+AR RKLR F N+RK AVVVFP P +LK+R+ KRFKEMG
Sbjct: 328 LLTRAAKIPRNYIIDQTNVYKNARSRKLRPFANYRKTAVVVFPSPSELKVRAAKRFKEMG 387

Query: 396 KE 397
           K+
Sbjct: 388 KD 389

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557660|ref|XP_003547133.1| PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1-like [Glycine max]

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 253/357 (70%), Positives = 299/357 (83%), Gaps = 4/357 (1%)

Query: 43  RVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPV 102
           RV LNPADCDLDF I+ NG    GLH+EGFAYCWSGARANVGI  G+YCF CK+VS Q V
Sbjct: 37  RVFLNPADCDLDFHIDGNGHVGYGLHEEGFAYCWSGARANVGITRGRYCFACKVVSAQTV 96

Query: 103 DMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDT 162
           +M+DT P+QQH+CR+G SRGD+ VG LGE+ QSFG+GGTGKFS+ G FL+FG+KFGVGDT
Sbjct: 97  NMQDTAPEQQHICRLGISRGDNAVGNLGESRQSFGYGGTGKFSNCGRFLDFGDKFGVGDT 156

Query: 163 IICAIDL--ESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
           I+C +DL  ES+PLA+IGF+KNGKWLG A QFDA    LGVVDS     Q  SA+FPH+L
Sbjct: 157 IVCCVDLDLESRPLASIGFSKNGKWLGAATQFDAAR--LGVVDSPPGNLQWTSALFPHVL 214

Query: 221 LKNVVVVMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKT 280
           LKNVVV MQFSV+ GL+P +G+K W SA++DGN V+GP+F   +DCEV+MMVGLPASGKT
Sbjct: 215 LKNVVVQMQFSVKDGLVPEDGFKPWASAMEDGNIVMGPSFSEPRDCEVIMMVGLPASGKT 274

Query: 281 TWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA 340
           TWAEKWVKDHPEKRY+LLGTN IL+QMKVPGLLR++NY ERF  LM RA  IF++LLSRA
Sbjct: 275 TWAEKWVKDHPEKRYVLLGTNSILDQMKVPGLLRRNNYGERFDLLMDRATRIFNILLSRA 334

Query: 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
           +  PRN+IIDQTNV+KSARKRKL  F +++KIAVVVFPKP++LKIRS KRF EMGKE
Sbjct: 335 ANIPRNYIIDQTNVYKSARKRKLEPFADYQKIAVVVFPKPDELKIRSDKRFTEMGKE 391

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414585252|tpg|DAA35823.1| TPA: putative SPRY-domain family protein [Zea mays]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 249/389 (64%), Positives = 307/389 (78%), Gaps = 8/389 (2%)

Query: 11  PDGDKPESVVKKAKVD-DPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQ 69
           PD +  +   K+ + D +P  D++   PR     VVLNPADCDLDFD+   GL+ S LH+
Sbjct: 223 PDDESAQPPSKRPRRDAEPEVDAAEPSPR-----VVLNPADCDLDFDVGGGGLRGSALHE 277

Query: 70  EGFAYCWSGARANVGINGG-KYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGK 128
            GFAYCWSGARA VG  GG +YCFGC+IV+ QPV+M+ T   ++H+CR+G SRGDDPVG 
Sbjct: 278 GGFAYCWSGARATVGARGGGRYCFGCRIVAEQPVEMDPTTSGERHLCRIGVSRGDDPVGA 337

Query: 129 LGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGT 188
           LGE++ SFGFGGTGKFSH   F+N+G KFGVGDT++CA+DL+SKP+A+IGFA+NG+WLG 
Sbjct: 338 LGESQHSFGFGGTGKFSHQRRFVNYGVKFGVGDTVVCAVDLDSKPMASIGFARNGEWLGI 397

Query: 189 AKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVEGYKSWVSA 248
           A+ FDAG  GLG+VD+ ++  +  SA+FPH+LLKNV+V MQFS E GL+PV+GY+ W SA
Sbjct: 398 ARHFDAGEKGLGLVDAPLRPMRWGSALFPHVLLKNVIVEMQFSREDGLLPVDGYEPWASA 457

Query: 249 LDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK 308
               NSV GP+F   K CEVMMMVGLPASGK+TWAEKWVK+H EKRYILLGTNL+LEQMK
Sbjct: 458 FSQRNSVFGPSFEQNK-CEVMMMVGLPASGKSTWAEKWVKEHQEKRYILLGTNLVLEQMK 516

Query: 309 VPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN 368
           VPGLLRK+NY ERF+ LM  A  IF+ LL+RA+ TPRNFIIDQTNV+K+AR RKLR F N
Sbjct: 517 VPGLLRKNNYGERFERLMDYATWIFNKLLTRAANTPRNFIIDQTNVYKNARIRKLRPFAN 576

Query: 369 FRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
           +RK AVV+FP P +LK R+ KRF EMGKE
Sbjct: 577 YRKTAVVMFPTPSELKSRAAKRFNEMGKE 605

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
ZFIN|ZDB-GENE-040426-2432	784	hnrnpul1 "heterogeneous nuclea	0.836	0.429	0.399	1.2e-56
UNIPROTKB|J9JHA9	756	HNRNPUL1 "Uncharacterized prot	0.833	0.444	0.383	1.6e-54
UNIPROTKB|B7Z4B8	767	HNRNPUL1 "cDNA FLJ56481, highl	0.833	0.438	0.383	1.6e-54
UNIPROTKB|E2RNY1	856	HNRNPUL1 "Uncharacterized prot	0.833	0.392	0.383	4.5e-54
UNIPROTKB|Q9BUJ2	856	HNRNPUL1 "Heterogeneous nuclea	0.833	0.392	0.383	4.5e-54
UNIPROTKB|A4FUC2	858	HNRNPUL1 "Uncharacterized prot	0.833	0.391	0.383	4.6e-54
MGI|MGI:2443517	859	Hnrnpul1 "heterogeneous nuclea	0.833	0.391	0.386	4.6e-54
RGD|1307456	859	Hnrnpul1 "heterogeneous nuclea	0.833	0.391	0.383	7.7e-54
ZFIN|ZDB-GENE-030131-6422	796	hnrnpub "heterogeneous nuclear	0.836	0.423	0.341	1.2e-47
UNIPROTKB|F1Q3W0	783	HNRNPU "Uncharacterized protei	0.836	0.430	0.355	3.4e-47

ZFIN|ZDB-GENE-040426-2432 hnrnpul1 "heterogeneous nuclear ribonucleoprotein U-like 1" [Danio rerio (taxid:7955)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 143/358 (39%), Positives = 199/358 (55%)

Query:    44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
             V ++  + DL F +  +      L  EGFAY WSGARA  G+N G+ C+  K+     V 
Sbjct:   201 VAIDTYNSDLHFKVSPDHCSGYPLTIEGFAYLWSGARATYGVNKGRVCYELKVKEYISVK 260

Query:   104 -MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDT 162
              +  + PD  HV RVG S  D    +LGE   S                ++GEKFG GD 
Sbjct:   261 HLPSSEPDP-HVVRVGWSL-DSCSTQLGEEAFSYGYGGTGKKSTNYKFGDYGEKFGEGDI 318

Query:   163 IICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK 222
             I C ID +S     + F+KNGKWL  A +               KE     A+FPH+L+K
Sbjct:   319 IGCYIDFDSHEQVEMAFSKNGKWLDVAFRVS-------------KEELAGQALFPHVLVK 365

Query:   223 NVVVVMQFSV-EQGLIPV-EGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPASGK 279
             N  V   F   E+   P+ +GY S++  +   N V G    + K DC+V+MMVGLPA GK
Sbjct:   366 NCAVEFNFGQREEPYFPLPDGY-SFIGDVSLENRVRGTVGPSSKSDCQVLMMVGLPACGK 424

Query:   280 TTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSR 339
             TTWA K  + +P+KR+ +LGTN I+E+MKV GL R+ NY+ R+  L+ +A    + LL  
Sbjct:   425 TTWAAKHAEMNPDKRFNILGTNAIMEKMKVMGLRRQRNYAGRWDILIQQATQCLNRLLQI 484

Query:   340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
             AS   RN+I+DQTNV+ SA++RK+R F  F + AVV+ P+ EDLK R  K+ ++ GK+
Sbjct:   485 ASHKKRNYILDQTNVYGSAQRRKMRPFEGFHRKAVVICPRDEDLKERRCKQAED-GKD 541

GO:0006396 "RNA processing" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|J9JHA9 HNRNPUL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 138/360 (38%), Positives = 196/360 (54%)

Query:    44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
             V ++  +CDL F +  +  +SSG  L  EGFAY WSGARA+ G+  G+ CF  KI     
Sbjct:   111 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 168

Query:   102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
             V  +  T PD  HV R+G S  D    +LGE   S                N+G+KF   
Sbjct:   169 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 226

Query:   161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
             D I C  D E      + F KNGKW+G A  F      LG             A++PH+L
Sbjct:   227 DVIGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 273

Query:   221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPAS 277
             +KN  V   F    E     + G+ +++  L     + G      K +CE++MMVGLPA+
Sbjct:   274 VKNCAVEFNFGQRAEPYCSVLPGF-TFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAA 332

Query:   278 GKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337
             GKTTWA K    +P K+Y +LGTN I+++M+V GL R+ NY+ R+  L+ +A    + L+
Sbjct:   333 GKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLI 392

Query:   338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
               A+R  RN+I+DQTNV+ SA++RK+R F  F++ A+V+ P  EDLK R++KR  E GK+
Sbjct:   393 QIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKD 452

GO:0009615 "response to virus" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

UNIPROTKB|B7Z4B8 HNRNPUL1 "cDNA FLJ56481, highly similar to Heterogeneous nuclear ribonucleoprotein U-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 138/360 (38%), Positives = 196/360 (54%)

Query:    44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
             V ++  +CDL F +  +  +SSG  L  EGFAY WSGARA+ G+  G+ CF  KI     
Sbjct:   122 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 179

Query:   102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
             V  +  T PD  HV R+G S  D    +LGE   S                N+G+KF   
Sbjct:   180 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 237

Query:   161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
             D I C  D E      + F KNGKW+G A  F      LG             A++PH+L
Sbjct:   238 DVIGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 284

Query:   221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPAS 277
             +KN  V   F    E     + G+ +++  L     + G      K +CE++MMVGLPA+
Sbjct:   285 VKNCAVEFNFGQRAEPYCSVLPGF-TFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAA 343

Query:   278 GKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337
             GKTTWA K    +P K+Y +LGTN I+++M+V GL R+ NY+ R+  L+ +A    + L+
Sbjct:   344 GKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLI 403

Query:   338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
               A+R  RN+I+DQTNV+ SA++RK+R F  F++ A+V+ P  EDLK R++KR  E GK+
Sbjct:   404 QIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKD 463

GO:0006396 "RNA processing" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|E2RNY1 HNRNPUL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 563 (203.2 bits), Expect = 4.5e-54, P = 4.5e-54
 Identities = 138/360 (38%), Positives = 196/360 (54%)

Query:    44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
             V ++  +CDL F +  +  +SSG  L  EGFAY WSGARA+ G+  G+ CF  KI     
Sbjct:   211 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 268

Query:   102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
             V  +  T PD  HV R+G S  D    +LGE   S                N+G+KF   
Sbjct:   269 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 326

Query:   161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
             D I C  D E      + F KNGKW+G A  F      LG             A++PH+L
Sbjct:   327 DVIGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 373

Query:   221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPAS 277
             +KN  V   F    E     + G+ +++  L     + G      K +CE++MMVGLPA+
Sbjct:   374 VKNCAVEFNFGQRAEPYCSVLPGF-TFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAA 432

Query:   278 GKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337
             GKTTWA K    +P K+Y +LGTN I+++M+V GL R+ NY+ R+  L+ +A    + L+
Sbjct:   433 GKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLI 492

Query:   338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
               A+R  RN+I+DQTNV+ SA++RK+R F  F++ A+V+ P  EDLK R++KR  E GK+
Sbjct:   493 QIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKD 552

GO:0019899 "enzyme binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q9BUJ2 HNRNPUL1 "Heterogeneous nuclear ribonucleoprotein U-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 563 (203.2 bits), Expect = 4.5e-54, P = 4.5e-54
 Identities = 138/360 (38%), Positives = 196/360 (54%)

Query:    44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
             V ++  +CDL F +  +  +SSG  L  EGFAY WSGARA+ G+  G+ CF  KI     
Sbjct:   211 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 268

Query:   102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
             V  +  T PD  HV R+G S  D    +LGE   S                N+G+KF   
Sbjct:   269 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 326

Query:   161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
             D I C  D E      + F KNGKW+G A  F      LG             A++PH+L
Sbjct:   327 DVIGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 373

Query:   221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPAS 277
             +KN  V   F    E     + G+ +++  L     + G      K +CE++MMVGLPA+
Sbjct:   374 VKNCAVEFNFGQRAEPYCSVLPGF-TFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAA 432

Query:   278 GKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337
             GKTTWA K    +P K+Y +LGTN I+++M+V GL R+ NY+ R+  L+ +A    + L+
Sbjct:   433 GKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLI 492

Query:   338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
               A+R  RN+I+DQTNV+ SA++RK+R F  F++ A+V+ P  EDLK R++KR  E GK+
Sbjct:   493 QIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKD 552

GO:0009615 "response to virus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0019899 "enzyme binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006396 "RNA processing" evidence=TAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|A4FUC2 HNRNPUL1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 563 (203.2 bits), Expect = 4.6e-54, P = 4.6e-54
 Identities = 138/360 (38%), Positives = 196/360 (54%)

Query:    44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
             V ++  +CDL F +  +  +SSG  L  EGFAY WSGARA+ G+  G+ CF  KI     
Sbjct:   212 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 269

Query:   102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
             V  +  T PD  HV R+G S  D    +LGE   S                N+G+KF   
Sbjct:   270 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 327

Query:   161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
             D I C  D E      + F KNGKW+G A  F      LG             A++PH+L
Sbjct:   328 DVIGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 374

Query:   221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPAS 277
             +KN  V   F    E     + G+ +++  L     + G      K +CE++MMVGLPA+
Sbjct:   375 VKNCAVEFNFGQRAEPYCSVLPGF-TFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAA 433

Query:   278 GKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337
             GKTTWA K    +P K+Y +LGTN I+++M+V GL R+ NY+ R+  L+ +A    + L+
Sbjct:   434 GKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLI 493

Query:   338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
               A+R  RN+I+DQTNV+ SA++RK+R F  F++ A+V+ P  EDLK R++KR  E GK+
Sbjct:   494 QIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKD 553

GO:0019899 "enzyme binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:2443517 Hnrnpul1 "heterogeneous nuclear ribonucleoprotein U-like 1" [Mus musculus (taxid:10090)]

 Score = 563 (203.2 bits), Expect = 4.6e-54, P = 4.6e-54
 Identities = 139/360 (38%), Positives = 196/360 (54%)

Query:    44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
             V ++  +CDL F +  +  +SSG  L  EGFAY WSGARA+ G+  G+ CF  KI     
Sbjct:   212 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 269

Query:   102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
             V  +  T PD  HV R+G S  D    +LGE   S                N+G+KF   
Sbjct:   270 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 327

Query:   161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
             D I C  D E      + F KNGKW+G A  F      LG             A++PH+L
Sbjct:   328 DVIGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 374

Query:   221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPAS 277
             +KN  V   F    E     + G+ +++  L     + G      K +CE++MMVGLPA+
Sbjct:   375 VKNCAVEFNFGQRAEPYCSVLPGF-TFIQHLPLSERIRGTIGPKSKAECEILMMVGLPAA 433

Query:   278 GKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337
             GKTTWA K    +P K+Y +LGTN I+++M+V GL R+ NY+ R+  L+ +A    + L+
Sbjct:   434 GKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLI 493

Query:   338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
               A+R  RN+I+DQTNV+ SA++RK+R F  F++ A+V+ P  EDLK R+VKR  E GK+
Sbjct:   494 QIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTVKRTDEEGKD 553

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|1307456 Hnrnpul1 "heterogeneous nuclear ribonucleoprotein U-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 561 (202.5 bits), Expect = 7.7e-54, P = 7.7e-54
 Identities = 138/360 (38%), Positives = 196/360 (54%)

Query:    44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
             V ++  +CDL F +  +  +SSG  L  EGFAY WSGARA+ G+  G+ CF  KI     
Sbjct:   212 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 269

Query:   102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
             V  +  T PD  HV R+G S  D    +LGE   S                N+G+KF   
Sbjct:   270 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 327

Query:   161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
             D I C  D E      + F KNGKW+G A  F      LG             A++PH+L
Sbjct:   328 DVIGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 374

Query:   221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPAS 277
             +KN  V   F    E     + G+ +++  L     + G      K +CE++MMVGLPA+
Sbjct:   375 VKNCAVEFNFGQRAEPYCSILPGF-TFIQHLPLSERIRGTIGPKSKAECEILMMVGLPAA 433

Query:   278 GKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337
             GKTTWA K    +P K+Y +LGTN I+++M+V GL R+ NY+ R+  L+ +A    + L+
Sbjct:   434 GKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLI 493

Query:   338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
               A+R  RN+I+DQTNV+ SA++RK+R F  F++ A+V+ P  EDLK R++KR  E GK+
Sbjct:   494 QIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKD 553

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0006396 "RNA processing" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA;ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

ZFIN|ZDB-GENE-030131-6422 hnrnpub "heterogeneous nuclear ribonucleoprotein Ub" [Danio rerio (taxid:7955)]

 Score = 483 (175.1 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
 Identities = 122/357 (34%), Positives = 184/357 (51%)

Query:    44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
             V L+P +CDL F +  N   +S L  E FA+ W+G RA+ G+N GK CF  K+    P+ 
Sbjct:   205 VCLDPYNCDLHFKVSRNRYSASSLTMESFAHLWAGGRASYGVNKGKVCFEMKVTEKTPIK 264

Query:   104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDTI 163
               ++     H   +G S  +  +  LGE E S                ++GE F   D I
Sbjct:   265 HLNSKIMDFHDVHIGWSLANGCLS-LGEEEFSYSYSDKGKKASNCVTEDYGEGFDENDVI 323

Query:   164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
              C I+ E+  +  I F+KNG             N LGV     KE   + A+FPH+L  N
Sbjct:   324 GCFINFEADEVE-ISFSKNG-------------NDLGVAFKVNKESLADRALFPHVLCHN 369

Query:   224 VVVVMQFSV-EQGLIP-VEGYKSWVSALDDGNSVLGPTF-CNMKDCEVMMMVGLPASGKT 280
               V   F   E    P +E + +++  +     + GP      KDCEV++MVGLP SGKT
Sbjct:   370 CTVEFNFGQNETPFFPKLEDF-TFMQQIPLEERIRGPKGPVAKKDCEVIVMVGLPGSGKT 428

Query:   281 TWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA 340
             TW  K V+++P K Y +L TN +LE++ +  + R++    +   +  R       L+  A
Sbjct:   429 TWVVKHVEENPGK-YNILSTNTVLEKLMINSVKRQNKDITKLMAISQRVPFYLGKLIEIA 487

Query:   341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
             +R  R++I+DQTNV  +A++RK+ LF  F++ AVVVFP  E+LK R+ K+ +  GK+
Sbjct:   488 ARKKRHYILDQTNVSSAAQRRKMCLFAGFQRKAVVVFPTDENLKERAQKKAEADGKD 544

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F1Q3W0 HNRNPU "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 482 (174.7 bits), Expect = 3.4e-47, Sum P(2) = 3.4e-47
 Identities = 127/357 (35%), Positives = 183/357 (51%)

Query:    44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
             V L+  +CDL F I  + L +S L  E FA+ W+G RA+ G++ GK CF  K+    PV 
Sbjct:   246 VCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVR 305

Query:   104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDTI 163
                T     H  R+G S     +  LGE E S                ++GEKF   D I
Sbjct:   306 HLYTKDIDIHEVRIGWSLTTSGM-LLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVI 364

Query:   164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
              C  + ES  +  + +AKNG+ LG A +               KE      +FPH+L  N
Sbjct:   365 TCFANFESDEVE-LSYAKNGQDLGVAFKIS-------------KEILAGRPLFPHVLCHN 410

Query:   224 VVVVMQFSV-EQGLIPV-EGYKSWVSALDDGNSVLGPTFCN-MKDCEVMMMVGLPASGKT 280
               V   F   E+   P+ E Y +++  +   + V GP      KDCEV+MM+GLP +GKT
Sbjct:   411 CAVEFNFGQKEKPYFPIPEDY-TFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKT 469

Query:   281 TWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA 340
             TW  K   ++P K Y +LGTN I+++M V G  ++   + +   L+ RA       +  A
Sbjct:   470 TWVTKHAAENPGK-YNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKFIEIA 528

Query:   341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
             +R  RNFI+DQTNV  +A++RK+ LF  F++ AVVV PK ED K R+ K+ +  GK+
Sbjct:   529 ARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKD 585

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00009742001 SubName- Full=Chromosome undetermined scaffold_247, whole genome shotgun sequence; (489 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	403
cd12884	176	cd12884, SPRY_hnRNP, SPRY domain in heterogeneous	1e-67
cd12873	155	cd12873, SPRY_DDX1, SPRY domain associated with DE	5e-33
pfam13671	143	pfam13671, AAA_33, AAA domain	2e-22
cd11709	118	cd11709, SPRY, SPRY domain	4e-11
cd12872	149	cd12872, SPRY_Ash2, SPRY domain in Ash2	1e-10
pfam00622	125	pfam00622, SPRY, SPRY domain	2e-10
cd12885	132	cd12885, SPRY_RanBP_like, SPRY domain in Ran bindi	3e-08
smart00449	122	smart00449, SPRY, Domain in SPla and the RYanodine	3e-08
cd12876	187	cd12876, SPRY_SOCS3, SPRY domain in the suppressor	9e-08
cd12875	171	cd12875, SPRY_SOCS_Fbox, SPRY domain in Fbxo45 and	3e-06
COG4639	168	COG4639, COG4639, Predicted kinase [General functi	3e-05
cd12886	128	cd12886, SPRY_like, SPRY domain-like in bacteria	5e-05
cd12907	175	cd12907, SPRY_Fbox, SPRY domain in the F-box famil	1e-04
cd12909	153	cd12909, SPRY_RanBP9_10, SPRY domain in Ran bindin	3e-04
cd12906	174	cd12906, SPRY_SOCS1-2-4, SPRY domain in the suppre	7e-04
TIGR03574	249	TIGR03574, selen_PSTK, L-seryl-tRNA(Sec) kinase, a	0.001
cd12882	128	cd12882, SPRY_RNF123, SPRY domain at N-terminus of	0.001
cd12878	133	cd12878, SPRY2_RyR, SPRY domain 2 (SPRY2) of ryano	0.004

>gnl|CDD|240464 cd12884, SPRY_hnRNP, SPRY domain in heterogeneous nuclear ribonucleoprotein U-like (hnRNP) protein 1

 Score =  211 bits (540), Expect = 1e-67
 Identities = 80/188 (42%), Positives = 100/188 (53%), Gaps = 16/188 (8%)

Query: 44  VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
           VVL+  + DL   I  +GL +  L  EGFAY W+GARA  G+  GK CF  K++   PV 
Sbjct: 1   VVLDWYNSDLHLKISKDGLSAEPLTDEGFAYLWAGARATYGVRKGKVCFEVKVLENLPVK 60

Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
              T     HV RVG S     + +LGE + S+G+G TGK S  G F ++GE FG GD I
Sbjct: 61  HLPTEETDPHVVRVGWSVDSSSL-QLGEEKLSYGYGSTGKKSTNGKFEDYGEPFGEGDVI 119

Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
            C +DLES+P   I F KNGK LG A + D    G               A+FPHIL KN
Sbjct: 120 GCYLDLESEP-VEISFTKNGKDLGVAFRIDKELEG--------------KALFPHILTKN 164

Query: 224 VVVVMQFS 231
             V + F 
Sbjct: 165 CAVEVNFG 172

This domain, consisting of the distinct N-terminal PRY subdomain followed by the SPRY subdomain, is found at the C-terminus of heterogeneous nuclear ribonucleoprotein U-like (hnRNP) protein 1 (also known as HNRPUL1 ) which is a major constituent of nuclear matrix or scaffold and binds directly to DNA sequences through the N-terminal acidic region named serum amyloid P (SAP). Its function is specifically modulated by E1B-55kDa in adenovirus-infected cells. HNRPUL1 also participates in ATR protein kinase signaling pathways during adenovirus infection. Two transcript variants encoding different isoforms have been found for this gene. When associated with bromodomain-containing protein 7 (BRD7), it activates transcription of glucocorticoid-responsive promoter in the absence of ligand-stimulation. Length = 176

>gnl|CDD|240453 cd12873, SPRY_DDX1, SPRY domain associated with DEAD box gene DDX1

 Score =  121 bits (305), Expect = 5e-33
 Identities = 62/188 (32%), Positives = 80/188 (42%), Gaps = 40/188 (21%)

Query: 46  LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGING-GKYCFGCKIVSTQPVDM 104
           ++P D D    I  +GL      Q      W G RA  G+ G GKY +   +        
Sbjct: 1   MSPYDRDAALAISPDGLLC----QSREEKGWQGCRATKGVKGKGKYYYEVTVTD------ 50

Query: 105 EDTPPDQQHVCRVG--TSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDT 162
                  + +CRVG  T         LG  +  FG+GGTGK SHG  F ++GE FG GD 
Sbjct: 51  -------EGLCRVGWSTEDASL---DLGTDKFGFGYGGTGKKSHGRQFEDYGEPFGKGDV 100

Query: 163 IICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK 222
           I C +DL++    TI F+KNGK LG A                        A+FP + LK
Sbjct: 101 IGCLLDLDN---GTISFSKNGKDLGVAFDIPPKLRN--------------QALFPAVCLK 143

Query: 223 NVVVVMQF 230
           N  V   F
Sbjct: 144 NAEVEFNF 151

This SPRY domain is associated with the DEAD box gene, DDX1, an RNA-dependent ATPase involved in HIV-1 Rev function and virus replication. It is suggested that DDX1 acts as a cellular cofactor by promoting oligomerization of Rev on the Rev response element (RRE). DDX1 RNA is overexpressed in breast cancer, data showing a strong and independent association between poor prognosis and deregulation of the DEAD box protein DDX1, thus potentially serving as an effective prognostic biomarker for early recurrence in primary breast cancer. DDX1 also interacts with RelA and enhances nuclear factor kappaB-mediated transcription. DEAD-box proteins are associated with all levels of RNA metabolism and function, and have been implicated in translation initiation, transcription, RNA splicing, ribosome assembly, RNA transport, and RNA decay. Length = 155

>gnl|CDD|222307 pfam13671, AAA_33, AAA domain

 Score = 92.0 bits (229), Expect = 2e-22
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 9/125 (7%)

Query: 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMG 327
           +++MVGLP SGK+T+A + ++   E   ++L ++ + ++++  G      Y+     +  
Sbjct: 1   LILMVGLPGSGKSTFARRLLR---ELGAVVLSSDTLRKRLRGDGPPDISYYARASGRVYQ 57

Query: 328 RANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFV--NFRKIAVVVFPKPEDLKI 385
           R   +    L       R  I+D TN+ +  R R + L          V +    E L+ 
Sbjct: 58  RLLELAREALRA----GRPVIVDATNLSREERARLIDLARRYGAPVRIVYLEAPEEVLRE 113

Query: 386 RSVKR 390
           R+ +R
Sbjct: 114 RNAQR 118

This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. Length = 143

>gnl|CDD|240451 cd11709, SPRY, SPRY domain

 Score = 59.4 bits (144), Expect = 4e-11
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 18/115 (15%)

Query: 88  GKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGD---DPVGKLGETEQSFGFGGTGKF 144
           GK+ +  ++ S     +           +VG +      D    +G+ E S+GF G+   
Sbjct: 1   GKWYYEVRVDSGNGGLI-----------QVGWATKSFSLDGERGVGDDEGSWGFDGSRLR 49

Query: 145 S-HGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNG 198
             HGG+    G  +  GD + C +DL++    T+ F+ NG  LG A +      G
Sbjct: 50  KGHGGSSEPGGRPWKSGDVVGCLLDLDAG---TLSFSLNGVDLGVAFENLFRKGG 101

SPRY domains, first identified in the SP1A kinase of Dictyostelium and rabbit Ryanodine receptor (hence the name), are homologous to B30.2. SPRY domains have been identified in at least 11 protein families, covering a wide range of functions, including regulation of cytokine signaling (SOCS), RNA metabolism (DDX1 and hnRNP), immunity to retroviruses (TRIM5alpha), intracellular calcium release (ryanodine receptors or RyR) and regulatory and developmental processes (HERC1 and Ash2L). B30.2 also contains residues in the N-terminus that form a distinct PRY domain structure; i.e. B30.2 domain consists of PRY and SPRY subdomains. B30.2 domains comprise the C-terminus of three protein families: BTNs (receptor glycoproteins of immunoglobulin superfamily); several TRIM proteins (composed of RING/B-box/coiled-coil or RBCC core); Stonutoxin (secreted poisonous protein of the stonefish Synanceia horrida). While SPRY domains are evolutionarily ancient, B30.2 domains are a more recent adaptation where the SPRY/PRY combination is a possible component of immune defense. Mutations found in the SPRY-containing proteins have shown to cause Mediterranean fever and Opitz syndrome. Length = 118

>gnl|CDD|240452 cd12872, SPRY_Ash2, SPRY domain in Ash2

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 38/120 (31%), Positives = 48/120 (40%), Gaps = 23/120 (19%)

Query: 76  WSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRG----DDPVGKLGE 131
           +  ARAN G+  GK+ F  KI+             +    RVG SR       PVG    
Sbjct: 16  YRMARANHGVREGKWYFEVKILE---------GGGETGHVRVGWSRREASLQAPVGY--- 63

Query: 132 TEQSFGFGG-TGKFSHGGNFLNFGEK-FGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
            + S+ +    G+  H      +GE  F  GD I C I L       I F KNGK  G A
Sbjct: 64  DKYSYAYRDKDGEKFHLSRGKPYGEPGFKEGDVIGCLITLPK-----IEFFKNGKSQGVA 118

This SPRY domain is found at the C-terminus of Ash2 (absent, small, or homeotic discs 2) -like proteins, core components of all mixed-lineage leukemia (MLL) family histone methyltransferases. Ash2 is a member of the trithorax group of transcriptional regulators of the Hox genes. Recent studies show that the SPRY domain of Ash2 mediates the interaction with RbBP5 and has an important role in regulating the methyltransferase activity of MLL complexes. In yeast, Ash2 is involved in histone methylation and is required for the earliest stages of embryogenesis. Length = 149

>gnl|CDD|216029 pfam00622, SPRY, SPRY domain

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 41/147 (27%), Positives = 58/147 (39%), Gaps = 33/147 (22%)

Query: 88  GKYCFGCKIVSTQPVDMEDTPPDQQHVCRVG--TSRGDDPVGKL-GETEQSFGFGGTGKF 144
           GK+ F         V+++          RVG  T     P  +L G+ E S+G+ G+G  
Sbjct: 2   GKHYFE--------VEVDTGGGGH---VRVGWATKSVKKPGFRLLGDDEGSWGYDGSGGS 50

Query: 145 S-HGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVD 203
             H G    +G KF  GD I C +DLE      I F KNGK LG     +    G     
Sbjct: 51  KYHNGESEPYGLKFQEGDVIGCFLDLEEG---EISFTKNGKDLGGYTFRNVEFGG----- 102

Query: 204 SAVKERQCESAVFPHILLKNVVVVMQF 230
                      ++P + L +    +QF
Sbjct: 103 ----------PLYPAVSLGSTGEAVQF 119

SPRY Domain is named from SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues. Length = 125

>gnl|CDD|240465 cd12885, SPRY_RanBP_like, SPRY domain in Ran binding proteins, SSH4, HECT E3 and SPRYD3

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 110 DQQHVCRVG-TSRGDDPVGKLGETEQSFGF-GGTGKFSHGGNFL-NFGEKFGVGDTIICA 166
            ++ +  +G  + G       G  + S+G+ G  G+   GG    N+G  FG GD + C 
Sbjct: 26  GEKGIVSIGFCTSGFPLNRMPGWEDGSYGYHGDDGRVYLGGGEGENYGPPFGTGDVVGCG 85

Query: 167 IDLESKPLATIGFAKNGKWLGTAKQF 192
           I+ ++     I F KNG+ LGTA + 
Sbjct: 86  INFKTG---EIFFTKNGELLGTAFEN 108

This family includes SPRY domains found in Ran binding proteins (RBP or RanBPM) 9 and 10, SSH4 (suppressor of SHR3 null mutation protein 4), SPRY domain-containing protein 3 (SPRYD3) as well as HECT, a C-terminal catalytic domain of a subclass of ubiquitin-protein ligase (E3). RanBP9 and RanBP10 act as androgen receptor (AR) coactivators. Both consist of the N-terminal proline- and glutamine-rich regions, the SPRY domain, and LisH-CTLH and CRA motifs. The SPRY domain in SSH4 may be involved in cargo recognition, either directly or by combination with other adaptors, possibly leading to a higher selectivity. SPRYD3 is highly expressed in most tissues in humans, possibly involved in important cellular processes. HECT E3 mediates the direct transfer of ubiquitin from E2 to substrate. Length = 132

>gnl|CDD|214669 smart00449, SPRY, Domain in SPla and the RYanodine Receptor

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 38/141 (26%), Positives = 53/141 (37%), Gaps = 36/141 (25%)

Query: 88  GKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGK---LGETEQSFGFGGT-GK 143
           G++ F  +I                   RVG +    P G    LGE + S+G+ G  GK
Sbjct: 2   GRHYFEVEIGDG-------------GHWRVGVATKSVPRGYFALLGEDKGSWGYDGDGGK 48

Query: 144 FSHGGNFLNFGEKFGV-GDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVV 202
             H      +G      GD I C +DLE+    TI F KNGK+L             G+ 
Sbjct: 49  KYHNSTGPEYGLPLQEPGDVIGCFLDLEAG---TISFYKNGKYLH------------GLA 93

Query: 203 DSAVKERQCESAVFPHILLKN 223
              VK       ++P   L +
Sbjct: 94  FFDVK---FSGPLYPAFSLGS 111

Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues. Length = 122

>gnl|CDD|240456 cd12876, SPRY_SOCS3, SPRY domain in the suppressor of cytokine signaling 3 (SOCS3) family

 Score = 51.4 bits (124), Expect = 9e-08
 Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 129 LGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTII-CAIDLESKPLATIGFAKNGKWLG 187
           LG  E+S+G    G   H G    + EKFG   TII   +D+ S    T+ F KNGK LG
Sbjct: 84  LGLDEESWGLSYKGLLWHNGESRPYTEKFGNQGTIIGVHLDMWS---GTLTFYKNGKPLG 140

Query: 188 TA 189
            A
Sbjct: 141 VA 142

The SPRY domain-containing SOCS box protein family (SPSB1-4, also known as SSB-1 to -4) is composed of a central SPRY protein interaction domain and a C-terminal SOCS box. All four SPSB proteins interact with c-Met, the hepatocyte growth factor receptor, but SOCS3 regulates cellular response to a variety of cytokines such as leukemia inhibitory factor (LIF) and interleukin 6. SOCS3, along with SOCS1, are expressed by immune cells and cells of the central nervous system (CNS) and have the potential to impact immune processes within the CNS. In non-small cell lung cancer (NSCLC), SOCS3 is silenced and proline-rich tyrosine kinase 2 (Pyk2) is over-expressed; it has been suggested that SOCS3 could be an effective way to prevent the progression of NSCLC due to its role in regulating Pyk2 expression. Length = 187

>gnl|CDD|240455 cd12875, SPRY_SOCS_Fbox, SPRY domain in Fbxo45 and suppressors of cytokine signaling (SOCS) proteins

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 30/157 (19%)

Query: 47  NPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMED 106
           NPADC  +  I+++GL     H+   A      R  +G + G + +  K    Q      
Sbjct: 4   NPADCSKNIYIKEDGLT---FHRRPVAQSTDAIRGKIGYSRGLHAWEVKWEGRQ------ 54

Query: 107 TPPDQQHVCRVGTSRGDDPVGK------LGETEQSFGFG-GTGKFSHGGNFL-------N 152
               +     VG +  D P+        LG   +S+G+   T K  H G  +       +
Sbjct: 55  ----RGSHAVVGVATKDAPLQCDGYVALLGSDSESWGWDLSTNKLYHDGKVVIGSYPAGS 110

Query: 153 FGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
             E + V D ++  +D+E     T+ F  NG++LG A
Sbjct: 111 ATENYSVPDRVLVILDMEDG---TLAFEANGEYLGVA 144

This family consists of the SPRY domain-containing SOCS box protein family (SPSB1-4, also known as SSB-1 to -4) as well as F-box protein 45 (Fbxo45), a novel synaptic E3 and ubiquitin ligase. The SPSB protein is composed of a central SPRY protein interaction domain and a C-terminal SOCS box. SPSB1, SPSB2, and SPSB4 interact with prostate apoptosis response protein 4 (Par-4) and are negative regulators that recruit the ECS E3 ubiquitin ligase complex to polyubiquitinate inducible nitric-oxide synthase (iNOS), resulting in its proteasomal degradation. Fbxo45 is related to this family; it is located N-terminal to the SPRY domain, and known to induce the degradation of a synaptic vesicle-priming factor, Munc13-1, via the SPRY domain, thus playing an important role in the regulation of neurotransmission by modulating Munc13-1 at the synapse. Suppressor of cytokine signaling (SOCS) proteins negatively regulate signaling from JAK-associated cytokine receptor complexes, and play key roles in the regulation of immune homeostasis. Length = 171

>gnl|CDD|226986 COG4639, COG4639, Predicted kinase [General function prediction only]

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 19/137 (13%)

Query: 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMG 327
           ++++ G   SGK+T+A++    +            +L    +  LL      E  Q    
Sbjct: 4   LVVLRGASGSGKSTFAKENFLQNY-----------VLSLDDLRLLLGVSASKENSQ---K 49

Query: 328 RANAIFDVLLSRASRTPRN---FIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-ED 382
               ++D+L  +  +  R     IID TN+ +  R++ + L   +  KI  +VF  P E 
Sbjct: 50  NDELVWDILYKQLEQRLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLEL 109

Query: 383 LKIRSVKRFKEMGKEQI 399
              R+  R +++ +E I
Sbjct: 110 CLARNKLRERQVPEEVI 126

Length = 168

>gnl|CDD|240466 cd12886, SPRY_like, SPRY domain-like in bacteria

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 19/112 (16%)

Query: 117 VGTSRGDDPVGK-LGETEQSFGFGGT----GKFSHGGNFLNFGEKFGVGDTIICAIDLES 171
           +G +     +   LG    S+G+         +S G    +FG  F  GD I  A+DL++
Sbjct: 20  IGVAPAAVTLNNGLGIELSSYGYSLGVSSGNTYSGGSTVASFGAGFTAGDVIGVALDLDA 79

Query: 172 KPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
                I F KNG W G+      G+N                 V+P +   +
Sbjct: 80  G---KIWFYKNGVWQGSG-SPAPGTNPAFAGT----------QVYPAVTGGS 117

This family contains SPRY-like domains that are found only in bacterial and are mostly uncharacterized. SPRY domains, first identified in the SP1A kinase of Dictyostelium and rabbit Ryanodine receptor (hence the name), are homologous to B30.2. SPRY domains have been identified in at least 11 eukaryotic protein families, covering a wide range of functions, including regulation of cytokine signaling (SOCS), RNA metabolism (DDX1 and hnRNP), immunity to retroviruses (TRIM5alpha), intracellular calcium release (ryanodine receptors or RyR) and regulatory and developmental processes (HERC1 and Ash2L). Length = 128

>gnl|CDD|240487 cd12907, SPRY_Fbox, SPRY domain in the F-box family Fbxo45

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 30/156 (19%)

Query: 47  NPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMED 106
           NP DC  +  I+ NG     LH+   A    GAR  +G + G++ +  ++    P+    
Sbjct: 4   NPNDCSRNVYIKPNGFT---LHRNPVAQSTDGARGKIGFSSGRHAW--EVWWEGPLGT-- 56

Query: 107 TPPDQQHVCRVGTSRGDDP------VGKLGETEQSFGFGGT-GKFSHGG----NF--LNF 153
                  V  VG +  + P      V  LG  +QS+G+        H G    N+   N 
Sbjct: 57  -------VAVVGIATKEAPLQCHGYVALLGSDDQSWGWNLVDNHLLHNGDVQGNYPQCNN 109

Query: 154 GEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
             K+ VG+ I   +D+E   LA   F +  ++LG A
Sbjct: 110 APKYQVGERIRVILDMEDNTLA---FERGYEFLGVA 142

Fbxo45 is a novel synaptic E3 and ubiquitin ligase, related to the suppressor of cytokine signaling (SOCS) proteins and located N-terminal to a SPRY (SPla and the ryanodine receptor) domain. Fbxo45 induces the degradation of a synaptic vesicle-priming factor, Munc13-1, via the SPRY domain, thus playing an important role in the regulation of neurotransmission by modulating Munc13-1 at the synapse. F-box motifs are found in proteins that function as the substrate recognition component of SCF E3 complexes. Length = 175

>gnl|CDD|240489 cd12909, SPRY_RanBP9_10, SPRY domain in Ran binding proteins 9 and 10

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 117 VGTSRGDDPVGKL-GETEQSFGF-GGTGKFSHG-GNFLNFGEKFGVGDTIICAIDLESKP 173
           +G S     + +L G  + S+G+ G  G      G    +G  F  GD I C I+     
Sbjct: 53  IGLSTKGVNLNRLPGWEKHSWGYHGDDGHSFSSSGTGKPYGPTFTTGDVIGCGINFVDN- 111

Query: 174 LATIGFAKNGKWLGTA 189
             TI + KNG  LGTA
Sbjct: 112 --TIFYTKNGVNLGTA 125

This family includes SPRY domain in Ran binding protein (RBP or RanBPM) 9 and 10, and similar proteins. RanBP9 (also known as RanBPM), a binding partner of Ran, is a small Ras-like GTPase that exerts multiple functions via interactions with various proteins. RanBP9 and RanBP10 also act as androgen receptor (AR) coactivators. Both consist of the N-terminal proline- and glutamine-rich regions, the SPRY domain, and LisH-CTLH and CRA motifs. SPRY domain of RanBPM forms a complex with CD39, a prototypic member of the NTPDase family, thus down-regulating activity substantially. RanBP10 enhances the transcriptional activity of AR in a ligand-dependent manner and exhibits a protein expression pattern different from RanBPM in various cell lines. RanBP10 is highly expressed in AR-positive prostate cancer LNCaP cells, while RanBPM is abundant in WI-38 and MCF-7 cells. Length = 153

>gnl|CDD|240486 cd12906, SPRY_SOCS1-2-4, SPRY domain in the suppressor of cytokine signaling 1, 2, 4 families (SOCS1, SOCS2, SOCS4)

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 33/160 (20%)

Query: 47  NPADCDLDFDI-EDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105
           NP D  L+  + ED+ L     H+   A    G R  VG + G + +  +I    P    
Sbjct: 4   NPEDRSLNIFVKEDDPLT---FHRHPVAQSTDGIRGKVGYSRGLHVW--EI--NWPTRQR 56

Query: 106 DTPPDQQHVCRVGTSRGDDPV------GKLGETEQSFGFG-GTGKFSHGGN--------- 149
            T     H   VG +  + P+        +G  E+S+G+  G  K  H            
Sbjct: 57  GT-----HAV-VGVATAEAPLHCVGYQSLVGSNEESWGWDLGRNKLYHDSKNNPGVTYPA 110

Query: 150 FLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
           FL   E F V D  +  +D++     T+ F  +G++LG A
Sbjct: 111 FLKPDENFVVPDKFLVVLDMDE---GTLSFVVDGQYLGVA 147

The SPRY domain-containing SOCS box protein family (SPSB1-4, also known as SSB-1 to -4) is composed of a central SPRY protein interaction domain and a C-terminal SOCS box. All four SPSB proteins interact with c-Met, the hepatocyte growth factor receptor, but only SPSB1, SPSB2, and SPSB4 interact with prostate apoptosis response protein 4 (Par-4). They are negative regulators that recruit the ECS E3 ubiquitin ligase complex to polyubiquitinate inducible nitric-oxide synthase (iNOS), resulting in its proteasomal degradation, thus contributing to protection against the cytotoxic effect of iNOS in activated macrophages. It has been shown that SPSB1 and SPSB4 induce the degradation of iNOS more strongly than SPSB2. The Drosophila melanogaster SPSB1 homolog, GUSTAVUS, interacts with the DEAD box RNA helicase Vasa. Suppressor of cytokine signaling (SOCS) proteins negatively regulate signaling from JAK-associated cytokine receptor complexes, and play key roles in the regulation of immune homeostasis. Length = 174

>gnl|CDD|132613 TIGR03574, selen_PSTK, L-seryl-tRNA(Sec) kinase, archaeal

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 34/136 (25%), Positives = 69/136 (50%), Gaps = 15/136 (11%)

Query: 268 VMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYSERFQCL 325
           ++++ GLP  GK+T++++  K   EK    I+LGT+LI E   V        + E+++  
Sbjct: 1   LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV--------WKEKYEEF 52

Query: 326 MGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK-PEDLK 384
                     L+  A +   + I+D TN + S R+  + +   + K  ++++ K P D  
Sbjct: 53  ---IRDSTLYLIKTALKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTL 109

Query: 385 I-RSVKRFKEMGKEQI 399
           + R+++R +++  E I
Sbjct: 110 LRRNIERGEKIPNEVI 125

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity [Protein synthesis, tRNA aminoacylation]. Length = 249

>gnl|CDD|240462 cd12882, SPRY_RNF123, SPRY domain at N-terminus of ring finger protein 123

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 25/127 (19%)

Query: 79  ARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQ-----HVCRVGTSRGDDPVGKLGETE 133
            RAN  +  GK+ +   +  T+ +         Q       CR     G      +G+T 
Sbjct: 2   IRANACVYKGKWMYEVTL-GTKGI--------MQIGWATISCRFTQEEG------VGDTP 46

Query: 134 QSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFD 193
            S+ + G        +   +GE +  GD I C IDL+     TI F +NG+ LG A  FD
Sbjct: 47  DSYAYDGNRVRKWNVSTQKYGEPWVAGDVIGCCIDLDEG---TISFYRNGRSLGVA--FD 101

Query: 194 AGSNGLG 200
               G G
Sbjct: 102 NVRRGPG 108

This SPRY domain is found at the N-terminus of RING finger protein 123 domain (also known as E3 ubiquitin-protein ligase RNF123). The ring finger domain motif is present in a variety of functionally distinct proteins and known to be involved in protein-protein and protein-DNA interactions. RNF123 displays E3 ubiquitin ligase activity toward the cyclin-dependent kinase inhibitor p27 (Kip1). Length = 128

>gnl|CDD|240458 cd12878, SPRY2_RyR, SPRY domain 2 (SPRY2) of ryanodine receptor (RyR)

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 8/74 (10%)

Query: 116 RVGTSRGDDPVGK-LGETEQSFGFGG--TGKFSHGGNFLNFGEKFGVGDTIICAIDLESK 172
           RVG +R        LG  + S+ F G    K+  G     FG+++  GD + C +DL  +
Sbjct: 29  RVGWARPGFRPDLELGSDDLSYAFDGFLARKWHQGSES--FGKQWQPGDVVGCMLDLVDR 86

Query: 173 PLATIGFAKNGKWL 186
              TI F  NG+ L
Sbjct: 87  ---TISFTLNGELL 97

This SPRY domain (SPRY2) is the second of three structural repeats in all three isoforms of the ryanodine receptor (RyR), which are the major Ca2+ release channels in the membranes of sarcoplasmic reticulum (SR). There are three RyR genes in mammals; the skeletal RyR1, the cardiac RyR2 and the brain RyR3. The three SPRY domains are located in the N-terminal part of the cytoplasmic region of the RyRs, The SPRY2 domain has been shown to bind to the dihydropryidine receptor (DHPR) II-III loop and the ASI region of RyR1. Length = 133

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	403
KOG0349	725	consensus Putative DEAD-box RNA helicase DDX1 [RNA	100.0
KOG2626	544	consensus Histone H3 (Lys4) methyltransferase comp	99.97
PF00622	124	SPRY: SPRY domain; InterPro: IPR003877 The SPRY do	99.88
smart00449	122	SPRY Domain in SPla and the RYanodine Receptor. Do	99.87
KOG2242	558	consensus Scaffold/matrix specific factor hnRNP-U/	99.83
COG4639	168	Predicted kinase [General function prediction only	99.78
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.76
KOG4030	197	consensus Uncharacterized conserved protein, conta	99.74
KOG3953	242	consensus SOCS box protein SSB-1, contains SPRY do	99.69
KOG2243	5019	consensus Ca2+ release channel (ryanodine receptor	99.69
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.62
PHA02530	300	pseT polynucleotide kinase; Provisional	99.61
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.57
COG0645	170	Predicted kinase [General function prediction only	99.56
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.55
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	99.54
PRK06762	166	hypothetical protein; Provisional	99.52
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	99.5
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	99.42
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.42
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.39
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.34
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.34
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.32
KOG2243	5019	consensus Ca2+ release channel (ryanodine receptor	99.31
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.27
KOG4367	699	consensus Predicted Zn-finger protein [Function un	99.25
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	99.24
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.23
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	99.23
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.19
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	99.13
PRK00889	175	adenylylsulfate kinase; Provisional	99.13
PRK14527	191	adenylate kinase; Provisional	99.07
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.06
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	99.06
PRK14532	188	adenylate kinase; Provisional	99.05
PRK05541	176	adenylylsulfate kinase; Provisional	99.03
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.0
PRK14531	183	adenylate kinase; Provisional	98.99
KOG3062	281	consensus RNA polymerase II elongator associated p	98.97
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.93
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	98.92
PLN02200	234	adenylate kinase family protein	98.91
PRK03846	198	adenylylsulfate kinase; Provisional	98.91
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.88
PRK01184	184	hypothetical protein; Provisional	98.81
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	98.8
PRK11545	163	gntK gluconate kinase 1; Provisional	98.79
PRK12338	319	hypothetical protein; Provisional	98.79
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	98.78
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.77
PRK00279	215	adk adenylate kinase; Reviewed	98.76
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.72
KOG1477	469	consensus SPRY domain-containing proteins [General	98.72
PRK09825	176	idnK D-gluconate kinase; Provisional	98.72
PRK14530	215	adenylate kinase; Provisional	98.69
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.65
PRK00625	173	shikimate kinase; Provisional	98.63
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.61
PRK00131	175	aroK shikimate kinase; Reviewed	98.6
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	98.6
PRK13946	184	shikimate kinase; Provisional	98.58
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	98.55
PRK07261	171	topology modulation protein; Provisional	98.55
PLN02674	244	adenylate kinase	98.54
PRK02496	184	adk adenylate kinase; Provisional	98.52
PRK06217	183	hypothetical protein; Validated	98.51
PRK13948	182	shikimate kinase; Provisional	98.5
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	98.49
PRK03839	180	putative kinase; Provisional	98.49
PRK13947	171	shikimate kinase; Provisional	98.48
PRK14529	223	adenylate kinase; Provisional	98.46
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	98.46
PTZ00088	229	adenylate kinase 1; Provisional	98.45
PRK14528	186	adenylate kinase; Provisional	98.43
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	98.43
PRK08118	167	topology modulation protein; Reviewed	98.42
PRK06547	172	hypothetical protein; Provisional	98.42
PRK13949	169	shikimate kinase; Provisional	98.42
PRK04040	188	adenylate kinase; Provisional	98.42
PRK13808	333	adenylate kinase; Provisional	98.39
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	98.39
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	98.37
PRK04182	180	cytidylate kinase; Provisional	98.36
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.36
PRK05057	172	aroK shikimate kinase I; Reviewed	98.35
KOG2134	422	consensus Polynucleotide kinase 3' phosphatase [Re	98.34
KOG4622	291	consensus Predicted nucleotide kinase [General fun	98.34
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.34
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.33
PLN02459	261	probable adenylate kinase	98.31
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	98.31
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.28
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	98.28
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.26
PRK14526	211	adenylate kinase; Provisional	98.26
PRK14737	186	gmk guanylate kinase; Provisional	98.25
PRK00698	205	tmk thymidylate kinase; Validated	98.25
PRK03731	171	aroL shikimate kinase II; Reviewed	98.22
PRK08233	182	hypothetical protein; Provisional	98.21
PRK13973	213	thymidylate kinase; Provisional	98.21
KOG0234	438	consensus Fructose-6-phosphate 2-kinase/fructose-2	98.19
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	98.19
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.16
PRK06696	223	uridine kinase; Validated	98.15
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	98.13
PRK14730	195	coaE dephospho-CoA kinase; Provisional	98.11
PRK08356	195	hypothetical protein; Provisional	98.1
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.08
PRK13975	196	thymidylate kinase; Provisional	98.07
PRK00300	205	gmk guanylate kinase; Provisional	98.07
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	98.06
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	98.01
PRK06761	282	hypothetical protein; Provisional	97.99
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	97.99
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.98
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	97.98
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.96
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	97.95
PRK05480	209	uridine/cytidine kinase; Provisional	97.93
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	97.93
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	97.92
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	97.89
PLN02199	303	shikimate kinase	97.87
PRK14738	206	gmk guanylate kinase; Provisional	97.86
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	97.86
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	97.85
PLN02924	220	thymidylate kinase	97.84
PLN02422	232	dephospho-CoA kinase	97.8
PRK14734	200	coaE dephospho-CoA kinase; Provisional	97.78
PRK07667	193	uridine kinase; Provisional	97.74
PRK13974	212	thymidylate kinase; Provisional	97.74
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.74
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.73
PLN02842	505	nucleotide kinase	97.71
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	97.7
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	97.69
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	97.67
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.67
PLN02772	398	guanylate kinase	97.54
PRK07933	213	thymidylate kinase; Validated	97.54
PLN02165	334	adenylate isopentenyltransferase	97.52
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	97.51
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.48
PRK14733	204	coaE dephospho-CoA kinase; Provisional	97.47
PRK14732	196	coaE dephospho-CoA kinase; Provisional	97.46
PRK14731	208	coaE dephospho-CoA kinase; Provisional	97.45
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	97.44
PTZ00451	244	dephospho-CoA kinase; Provisional	97.43
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.4
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	97.34
PF00004	132	AAA: ATPase family associated with various cellula	97.33
PLN02348	395	phosphoribulokinase	97.28
PRK05439	311	pantothenate kinase; Provisional	97.25
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	97.23
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.17
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.13
PRK13976	209	thymidylate kinase; Provisional	97.1
COG3709	192	Uncharacterized component of phosphonate metabolis	97.1
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.1
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	97.09
PLN02318	656	phosphoribulokinase/uridine kinase	97.09
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.08
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	97.08
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	97.06
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.06
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	97.05
TIGR00959	428	ffh signal recognition particle protein. This mode	97.05
KOG1477	469	consensus SPRY domain-containing proteins [General	97.04
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.04
PRK10867	433	signal recognition particle protein; Provisional	97.04
PTZ00301	210	uridine kinase; Provisional	97.03
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.02
PRK14974	336	cell division protein FtsY; Provisional	96.96
PRK07429	327	phosphoribulokinase; Provisional	96.96
PRK09087	226	hypothetical protein; Validated	96.94
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	96.93
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.92
KOG4238	627	consensus Bifunctional ATP sulfurylase/adenosine 5	96.91
smart00382	148	AAA ATPases associated with a variety of cellular	96.91
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.9
PHA00729	226	NTP-binding motif containing protein	96.9
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	96.88
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.86
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.84
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	96.84
PF13173	128	AAA_14: AAA domain	96.81
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	96.8
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	96.74
CHL00181	287	cbbX CbbX; Provisional	96.73
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.72
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	96.72
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	96.72
KOG3308	225	consensus Uncharacterized protein of the uridine k	96.69
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	96.66
PRK10416	318	signal recognition particle-docking protein FtsY;	96.64
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.58
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.56
PRK14086	617	dnaA chromosomal replication initiation protein; P	96.53
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	96.52
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.5
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	96.49
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.48
PRK08084	235	DNA replication initiation factor; Provisional	96.46
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	96.46
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	96.46
PHA03132	580	thymidine kinase; Provisional	96.44
PRK00149	450	dnaA chromosomal replication initiation protein; R	96.42
PF13245	76	AAA_19: Part of AAA domain	96.38
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	96.36
PRK06620	214	hypothetical protein; Validated	96.35
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.33
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	96.29
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.28
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.28
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	96.26
PRK14088	440	dnaA chromosomal replication initiation protein; P	96.25
cd03246	173	ABCC_Protease_Secretion This family represents the	96.25
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	96.23
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.23
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.22
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	96.21
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	96.17
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.13
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	96.12
PRK05642	234	DNA replication initiation factor; Validated	96.12
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.08
PRK06893	229	DNA replication initiation factor; Validated	96.07
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.05
KOG0780	483	consensus Signal recognition particle, subunit Srp	96.02
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.02
PRK08727	233	hypothetical protein; Validated	95.99
PHA02544	316	44 clamp loader, small subunit; Provisional	95.98
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	95.98
PRK08116	268	hypothetical protein; Validated	95.96
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.93
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	95.92
PRK15453	290	phosphoribulokinase; Provisional	95.92
PRK12402	337	replication factor C small subunit 2; Reviewed	95.92
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	95.92
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	95.9
KOG1533	290	consensus Predicted GTPase [General function predi	95.9
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	95.89
PRK12377	248	putative replication protein; Provisional	95.89
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	95.88
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	95.87
PF05729	166	NACHT: NACHT domain	95.86
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	95.85
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	95.84
PTZ00202	550	tuzin; Provisional	95.83
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	95.83
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.83
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	95.83
PLN02840	421	tRNA dimethylallyltransferase	95.83
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	95.83
PLN02748	468	tRNA dimethylallyltransferase	95.82
COG3911	183	Predicted ATPase [General function prediction only	95.81
PRK13695	174	putative NTPase; Provisional	95.8
COG2884	223	FtsE Predicted ATPase involved in cell division [C	95.8
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	95.8
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	95.8
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	95.76
PRK00023	225	cmk cytidylate kinase; Provisional	95.74
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	95.71
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	95.71
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	95.68
PLN03025	319	replication factor C subunit; Provisional	95.67
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	95.66
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	95.65
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	95.63
PRK12422	445	chromosomal replication initiation protein; Provis	95.62
PRK03992	389	proteasome-activating nucleotidase; Provisional	95.62
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	95.6
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	95.55
COG2256	436	MGS1 ATPase related to the helicase subunit of the	95.52
PLN02796	347	D-glycerate 3-kinase	95.51
PRK09183	259	transposase/IS protein; Provisional	95.51
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	95.5
cd03216	163	ABC_Carb_Monos_I This family represents the domain	95.46
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	95.45
cd03215	182	ABC_Carb_Monos_II This family represents domain II	95.44
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	95.44
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	95.43
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	95.39
COG1341	398	Predicted GTPase or GTP-binding protein [General f	95.38
COG1855	604	ATPase (PilT family) [General function prediction	95.36
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	95.34
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	95.33
PRK13342	413	recombination factor protein RarA; Reviewed	95.32
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	95.31
PRK06921	266	hypothetical protein; Provisional	95.28
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	95.28
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	95.27
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.26
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	95.25
PLN03046	460	D-glycerate 3-kinase; Provisional	95.23
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	95.22
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	95.22
PRK07952	244	DNA replication protein DnaC; Validated	95.22
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	95.21
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	95.2
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	95.18
PRK08760	476	replicative DNA helicase; Provisional	95.17
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	95.16
PRK09435	332	membrane ATPase/protein kinase; Provisional	95.16
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	95.15
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	95.14
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	95.14
PHA02244	383	ATPase-like protein	95.12
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	95.11
PRK04328	249	hypothetical protein; Provisional	95.11
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	95.1
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	95.1
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	95.08
cd03116	159	MobB Molybdenum is an essential trace element in t	95.08
PRK13341	725	recombination factor protein RarA/unknown domain f	95.07
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	95.06
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	95.05
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	95.03
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	95.02
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	95.02
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	95.01
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	95.01
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	95.0
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	94.99
CHL00195	489	ycf46 Ycf46; Provisional	94.98
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	94.98
PRK08181	269	transposase; Validated	94.91
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	94.89
PF13479	213	AAA_24: AAA domain	94.88
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	94.88
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	94.88
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	94.88
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	94.87
TIGR00101	199	ureG urease accessory protein UreG. This model rep	94.87
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	94.85
CHL00176	638	ftsH cell division protein; Validated	94.83
cd03112	158	CobW_like The function of this protein family is u	94.81
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	94.8
PRK05636	505	replicative DNA helicase; Provisional	94.78
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	94.76
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	94.75
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	94.74
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	94.73
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	94.72
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	94.72
PRK06835	329	DNA replication protein DnaC; Validated	94.72
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	94.71
PRK08533	230	flagellar accessory protein FlaH; Reviewed	94.68
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	94.68
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	94.68
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	94.65
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	94.65
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	94.64
TIGR03600	421	phage_DnaB phage replicative helicase, DnaB family	94.64
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	94.63
PRK13764	602	ATPase; Provisional	94.63
TIGR00665	434	DnaB replicative DNA helicase. This model describe	94.62
PRK00411	394	cdc6 cell division control protein 6; Reviewed	94.61
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	94.58
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	94.56
COG1660	286	Predicted P-loop-containing kinase [General functi	94.56
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	94.56
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	94.53
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	94.52
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	94.52
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	94.51
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	94.5
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	94.5
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	94.48
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	94.47
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	94.45
PRK09165	497	replicative DNA helicase; Provisional	94.43
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	94.43
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	94.42
PF00005	137	ABC_tran: ABC transporter This structure is on hol	94.41
KOG1969	877	consensus DNA replication checkpoint protein CHL12	94.41
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	94.4
PRK06321	472	replicative DNA helicase; Provisional	94.39
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	94.38
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	94.38
cd02034	116	CooC The accessory protein CooC, which contains a	94.37
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	94.33
cd03114	148	ArgK-like The function of this protein family is u	94.32
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	94.27
PRK13768	253	GTPase; Provisional	94.22
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	94.22
PRK08506	472	replicative DNA helicase; Provisional	94.18
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	94.18
PRK13833	323	conjugal transfer protein TrbB; Provisional	94.18
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	94.17
PRK08006	471	replicative DNA helicase; Provisional	94.15
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	94.15
PRK15455	644	PrkA family serine protein kinase; Provisional	94.14
PRK00440	319	rfc replication factor C small subunit; Reviewed	94.13
PRK07004	460	replicative DNA helicase; Provisional	94.11
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	94.11
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	94.1
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	94.1
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	94.09
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	94.09
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	94.06
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	94.0
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	93.99
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	93.97
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	93.97
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	93.95
cd01394	218	radB RadB. The archaeal protein radB shares simila	93.94
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	93.93
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	93.93
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	93.89
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	93.89
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	93.89
TIGR02237	209	recomb_radB DNA repair and recombination protein R	93.87
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	93.87
PRK05973	237	replicative DNA helicase; Provisional	93.85
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	93.85
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	93.84
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	93.8
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	93.8
PF13555	62	AAA_29: P-loop containing region of AAA domain	93.78
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	93.77
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	93.76
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	93.75
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	93.75
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	93.74
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	93.73
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	93.71
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	93.69
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	93.68
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	93.68
PRK04296	190	thymidine kinase; Provisional	93.65
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	93.63
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	93.62
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	93.59
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	93.59
PRK14087	450	dnaA chromosomal replication initiation protein; P	93.58
PRK13851	344	type IV secretion system protein VirB11; Provision	93.55
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	93.52
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	93.51
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	93.51
COG4619	223	ABC-type uncharacterized transport system, ATPase	93.51
cd03234	226	ABCG_White The White subfamily represents ABC tran	93.5
COG1084	346	Predicted GTPase [General function prediction only	93.5
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	93.49
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	93.49
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	93.48
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	93.47
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	93.46
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	93.43
COG4988	559	CydD ABC-type transport system involved in cytochr	93.42
PRK05748	448	replicative DNA helicase; Provisional	93.41
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	93.4
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	93.4
cd03269	210	ABC_putative_ATPase This subfamily is involved in	93.38
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	93.38
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	93.38
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	93.38
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	93.36
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	93.36
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	93.34
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	93.33
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	93.31
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	93.3
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	93.3
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	93.28
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	93.28
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	93.27
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	93.24
PRK05595	444	replicative DNA helicase; Provisional	93.24
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	93.23
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	93.23
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	93.23
PF07726	131	AAA_3: ATPase family associated with various cellu	93.23
cd01128	249	rho_factor Transcription termination factor rho is	93.21
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	93.2
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	93.19
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	93.18
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	93.17
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	93.17
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	93.17
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	93.17
PRK08939	306	primosomal protein DnaI; Reviewed	93.16
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	93.16
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	93.15
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	93.12
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	93.12
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	93.12
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	93.11
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	93.09
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	93.09
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	93.06
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	93.04
COG1484	254	DnaC DNA replication protein [DNA replication, rec	93.03
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	93.02
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	93.01
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	93.0
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	93.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	93.0

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]

Probab=100.00  E-value=8.7e-38  Score=303.91  Aligned_cols=173  Identities=34%  Similarity=0.576  Sum_probs=158.2

Q ss_pred             cEEeCcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceec-CCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEec
Q 015668           43 RVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGIN-GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSR  121 (403)
Q Consensus        43 ~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~-~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~  121 (403)
                      .|+||++|+++.|.|++|||.|++..    .+.|.++|||.|+. .|||||||+|.+             .|.|||||||
T Consensus        88 ~w~mn~~Drg~alaI~~dGL~CqSre----~KeWhGcRaT~Gl~gkGK~YyEvtitd-------------~GLCRVGWsT  150 (725)
T KOG0349|consen   88 EWKMNKQDRGLALAIDEDGLACQSRE----KKEWHGCRATAGLYGKGKYYYEVTITD-------------KGLCRVGWST  150 (725)
T ss_pred             ccccCccccCceeeEcCCccccchhH----HhhhhccccccccccCceEEEEEEecc-------------Cceeeechhh
Confidence            49999999999999999999998753    47899999999999 899999999985             5999999999


Q ss_pred             CCCCCCCCCCCCcceeEecCCceeeCCCcccCCCCCCCCCEEEEEEecCCCCCceEEEEeCcccccccccccCCCCCCcc
Q 015668          122 GDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGV  201 (403)
Q Consensus       122 ~~~~~~~lG~d~~Sygy~~~G~~~~~~~~~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg~af~~~~~~~~l~~  201 (403)
                      .+. +.-+|.+..+|||+++|++++|.++.+||++|+..|||||+||+++   .+|.|+|||+.+|.||++++..     
T Consensus       151 ~qa-sLdlGt~~~gFGfGGTGkKS~nkqFDdYGe~Ft~~DvIGCyLDld~---~~v~fsKNG~~lg~AF~ip~~~-----  221 (725)
T KOG0349|consen  151 LQA-SLDLGTGLDGFGFGGTGKKSTNKQFDDYGEPFTLNDVIGCYLDLDS---RTVWFSKNGEQLGAAFSIPVKY-----  221 (725)
T ss_pred             ccc-ccccCccccccccCccCccccccccccccCcccccceeeEEEeccC---ceEEEecCccccceeEEcChhh-----
Confidence            774 5679999999999999999999999999999999999999999999   8999999999999999987643     


Q ss_pred             ccchhhcccCCCceEeEEEEeCeEEEEEccCCC-CCCCcccceecccccc
Q 015668          202 VDSAVKERQCESAVFPHILLKNVVVVMQFSVEQ-GLIPVEGYKSWVSALD  250 (403)
Q Consensus       202 ~~~~~~g~~~~~~~fP~v~l~~~~v~~nFG~~~-~~~p~~g~~p~~~~~~  250 (403)
                               ....|||||.++|+++.+|||.++ +|+|-+||....+|.+
T Consensus       222 ---------kn~~lfPAvvlkNael~fNFG~~~FKfpPgngFva~s~Ap~  262 (725)
T KOG0349|consen  222 ---------KNSNLFPAVVLKNAELSFNFGSQPFKFPPGNGFVAVSDAPN  262 (725)
T ss_pred             ---------cccccchheeeccceEEEecCCCccccCCCCceEEeecCCc
Confidence                     267899999999999999999875 7777899999987765

>KOG2626 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics; Transcription]

Probab=99.97  E-value=6.5e-31  Score=261.82  Aligned_cols=167  Identities=25%  Similarity=0.310  Sum_probs=147.8

Q ss_pred             CCcEEeCcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEe
Q 015668           41 KQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS  120 (403)
Q Consensus        41 ~~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s  120 (403)
                      ...|.|++.|++.+|.|++|.|+++.-      +++++|||+|||..|.|||||+|++-          .+..++|+||+
T Consensus       290 ~~tv~l~~hdrA~ql~Is~drlt~tge------KGy~MvRAshgv~~G~WYFEI~vd~~----------pd~~a~RlGws  353 (544)
T KOG2626|consen  290 MDTVNLSWHDRAEQLKISEDRLTATGE------KGYRMVRASHGVLEGAWYFEIKVDEM----------PDDAAIRLGWS  353 (544)
T ss_pred             hhhhhhhhhcccccccccccceeeecc------cceeeeeecccccccceeEEEEeecC----------CCccceeeecc
Confidence            347999999999999999999999873      89999999999999999999999864          15689999999


Q ss_pred             cCCCC-CCCCCCCCcceeEe-cCCceeeCCCcccCCCCCCCCCEEEEEEecCC---------------------------
Q 015668          121 RGDDP-VGKLGETEQSFGFG-GTGKFSHGGNFLNFGEKFGVGDTIICAIDLES---------------------------  171 (403)
Q Consensus       121 ~~~~~-~~~lG~d~~Sygy~-~~G~~~~~~~~~~yG~~f~~gDVIGc~ldl~~---------------------------  171 (403)
                      +.... +.+||+|++||+|+ ..|.++|.+....|-..|+.||||||+|+|+.                           
T Consensus       354 q~~g~LqApvGYdkfsY~wRdk~GtKfh~s~gk~Y~~gf~qGDvLGf~I~LP~~~~~~~~lp~~~kdk~lI~yK~~lyfe  433 (544)
T KOG2626|consen  354 QLYGNLQAPVGYDKFSYGWRDKKGTKFHESLGKHYSDGFGQGDVLGFYINLPKDLSPEKYLPLTHKDKFLIKYKGHLYFE  433 (544)
T ss_pred             ccccccccccccccccccccccCCcchhhhhhhhhhhhccCCceEEEEEecCCcccccccCCccccccceeeeeeeeEEE
Confidence            97764 68999999999996 58999999999999999999999999999986                           


Q ss_pred             --------------CCCceEEEEeCcccccccccccCCCCCCccccchhhcccCCCceEeEEEEe-CeEEEEEccCCCCC
Q 015668          172 --------------KPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVEQGL  236 (403)
Q Consensus       172 --------------~p~~~i~ftkNG~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~-~~~v~~nFG~~~~~  236 (403)
                                    .|...|.|+|||+.+|+||+.   ..             ..+.|||+||+. +|.|.+|||+.|.+
T Consensus       434 ~~d~v~k~~k~l~~~pgS~I~f~KNG~~qG~Ay~n---i~-------------~~G~YyPaIS~yks~tv~~nfGP~F~~  497 (544)
T KOG2626|consen  434 DPDNVAKIEKTLKIKPGSEIEFFKNGVSQGVAYEN---IY-------------KAGAYYPAISIYKSCTVKFNFGPQFRY  497 (544)
T ss_pred             ccchhhhhhhccccCCCceEEEeecccchhhhhhh---hh-------------ccccccceeeecccceEEEeccccccC
Confidence                          256789999999999999982   10             136899999998 89999999999998


Q ss_pred             CCc
Q 015668          237 IPV  239 (403)
Q Consensus       237 ~p~  239 (403)
                      +|-
T Consensus       498 ~p~  500 (544)
T KOG2626|consen  498 PPC  500 (544)
T ss_pred             Ccc
Confidence            763

>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function

Probab=99.88  E-value=1e-21  Score=166.14  Aligned_cols=116  Identities=29%  Similarity=0.469  Sum_probs=98.3

Q ss_pred             CCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCC----CCCCCCCCCcceeEecCC-ceeeCCCcccCCCCCCC-C
Q 015668           87 GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDD----PVGKLGETEQSFGFGGTG-KFSHGGNFLNFGEKFGV-G  160 (403)
Q Consensus        87 ~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~~~~----~~~~lG~d~~Sygy~~~G-~~~~~~~~~~yG~~f~~-g  160 (403)
                      +|+|||||+|.+.             ..++|||++...    ....+|++..||+|+..+ ..+++.....++.++.. |
T Consensus         1 sG~~YwEV~v~~~-------------~~~~iGv~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (124)
T PF00622_consen    1 SGKHYWEVEVDSG-------------GSISIGVATSSASVSGDENLSGYDPFSWGFHGDGGKKYHGGTSEETGSPFQEPG   67 (124)
T ss_dssp             SSEEEEEEEETGG-------------CTEEEEEEETTSEESSSTS-TTSSTTEEEEETTTTTEEESTSSSECSCTSSTTT
T ss_pred             CcCEEEEEEEecC-------------cCEEEEEeECccccCCccccCCccccceeeeccccccceeecccccccccccCC
Confidence            5999999999864             339999999876    245789999999999877 88899888999999998 9


Q ss_pred             CEEEEEEecCCCCCceEEEEeCccccc-ccccccCCCCCCccccchhhcccCCCceEeEEEEe-CeEEEEEccCCC
Q 015668          161 DTIICAIDLESKPLATIGFAKNGKWLG-TAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVEQ  234 (403)
Q Consensus       161 DVIGc~ldl~~~p~~~i~ftkNG~~lg-~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~-~~~v~~nFG~~~  234 (403)
                      |||||+||++.   ++|+|++||+.++ .+|+. ..               ...++||+|++. ++.+++|||++|
T Consensus        68 dvIG~~lD~~~---g~l~F~~ng~~~~~~~f~~-~~---------------~~~~l~P~v~~~~~~~~~~n~g~~~  124 (124)
T PF00622_consen   68 DVIGCGLDLDN---GELSFYKNGKFLGIYAFTD-ID---------------FSEPLYPAVSLGGGQSVELNFGQRP  124 (124)
T ss_dssp             SEEEEEEETTT---TEEEEEETTEEEEEEEEES-CT---------------TSSSBEEEEEEESTSEEEEEEEC--
T ss_pred             cEEEEEEeecc---cEEEEEECCccceeEEEEC-CC---------------CCCcEEEEEEecCCCEEEEEeCCCC
Confidence            99999999999   8999999999999 77761 11               146999999999 899999999975

Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A ....

>smart00449 SPRY Domain in SPla and the RYanodine Receptor

Probab=99.87  E-value=1.6e-21  Score=164.94  Aligned_cols=114  Identities=33%  Similarity=0.528  Sum_probs=97.3

Q ss_pred             CCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCCC---CCCCCCCCcceeEecCC-ceeeCCCcccCCCCCCC-CC
Q 015668           87 GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDP---VGKLGETEQSFGFGGTG-KFSHGGNFLNFGEKFGV-GD  161 (403)
Q Consensus        87 ~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~~~~~---~~~lG~d~~Sygy~~~G-~~~~~~~~~~yG~~f~~-gD  161 (403)
                      +|+|||||+|.+             .+.++|||++...+   ...+|++.+||+|+.++ .++++.....|+.++.. ||
T Consensus         1 sG~~YwEV~v~~-------------~~~~~vGv~~~~~~r~~~~~~G~~~~sw~~~~~~g~~~~~~~~~~~~~~~~~~gd   67 (122)
T smart00449        1 SGRHYFEVEIFD-------------GGHWRVGVATKSVPRGYFALLGEDKGSWGYDGDGGKKYHNSTGPEYGLPLQEPGD   67 (122)
T ss_pred             CCcEEEEEEEcC-------------CCeEEEEEEcCccCCCccccCCCCCCEEEEEcCCCcEEeCCCCCccCccccCCCC
Confidence            599999999984             37899999997754   46899999999998765 88888777789999997 99


Q ss_pred             EEEEEEecCCCCCceEEEEeCcccc-cccccccCCCCCCccccchhhcccCCCceEeEEEEe-CeEEEEEccC
Q 015668          162 TIICAIDLESKPLATIGFAKNGKWL-GTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSV  232 (403)
Q Consensus       162 VIGc~ldl~~~p~~~i~ftkNG~~l-g~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~-~~~v~~nFG~  232 (403)
                      +|||+||++.   ++|+|++||+.+ +.+|.. ..               ...++||++++. ...+.+|||+
T Consensus        68 ~iGv~lD~~~---g~l~F~~ng~~~~~~~f~~-~~---------------~~~~l~P~~~~~~~~~~~~n~g~  121 (122)
T smart00449       68 VIGCFLDLEA---GTISFYKNGKYLHGLAFFD-VK---------------FSGPLYPAVSLGSGCSVRLNFGP  121 (122)
T ss_pred             EEEEEEECCC---CEEEEEECCCEeeeEEEec-cC---------------CCCcEeeEEEcCCCCEEEEEecC
Confidence            9999999999   899999999999 788851 11               146999999998 4589999996

Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.

>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification]

Probab=99.83  E-value=3.1e-22  Score=207.65  Aligned_cols=353  Identities=32%  Similarity=0.458  Sum_probs=271.9

Q ss_pred             CCCCCCCCCCCcEEeCcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCC
Q 015668           32 SSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQ  111 (403)
Q Consensus        32 ~~~~~~~~~~~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~  111 (403)
                      ..-..+++ +..+..|..+|+.. ....+..+....+.++++..|.+.|+.+++..+...||-.+.+.-...+.......
T Consensus        27 ~~~~~~~~-~~~~~~d~~~c~~~-~~~~~~~~~~~~~~e~~~~~~~~~r~a~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  104 (558)
T KOG2242|consen   27 AEEDEWHF-DTIVCIDTYNCDLH-KYRRDRSSGYALTKERFAGPWDGARAAYSVSRGEVCFEMRINEPEEVPHFQPLEPD  104 (558)
T ss_pred             cccccccc-ceeeechhhhhhhh-hcccccccccccchhhccccCcccceeeeecCCcchhhcccccccccCCCCccccc
Confidence            33355667 88889999999999 88888877777777778888999999999999888888888766544444444445


Q ss_pred             CCcEEEEEecCCCCCCCCCCCCcceeEecCCceeeCCCcccCCCCCCCCCEEEEEEecCCCCCceEEEEeCccccccccc
Q 015668          112 QHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQ  191 (403)
Q Consensus       112 ~~~~rVG~s~~~~~~~~lG~d~~Sygy~~~G~~~~~~~~~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg~af~  191 (403)
                      ....+++|+.... ...++++..+|+|...+.+..+..+..|++.|...|+|||.+++.......+.|.|||+.++.+|.
T Consensus       105 ~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~f~e~~~i~c~~~~~~~d~~~l~~~k~~~~~~~~~~  183 (558)
T KOG2242|consen  105 PHDVRIGWSLDSI-RTLLGDEPFSYGYSETGKKSCNSEVEKYGEKFPENDVIGCFADFEILDEVELSYEKNGQDLGESFL  183 (558)
T ss_pred             cccccccccchhh-hhccccccccccccccccchhhHHHHHHHhhcccccccchhhcccccccCcchhhhccchhhhhhc
Confidence            6788999987542 457899999999999999999999999999999999999999987533367899999999999987


Q ss_pred             ccCCCCCCccccchhhcccCCCceEeEEEEeCeEEEEEccCCC-CCCCcccceeccccccCCCcccCCCCC-CCCCceEE
Q 015668          192 FDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQ-GLIPVEGYKSWVSALDDGNSVLGPTFC-NMKDCEVM  269 (403)
Q Consensus       192 ~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~~~~v~~nFG~~~-~~~p~~g~~p~~~~~~~~~~~~~p~~~-~~~~~~vi  269 (403)
                      ++...             .....+||++..+++.|..|||+.. .+.+..-...+..++...+++..|.++ ....|.++
T Consensus       184 l~~~~-------------~~~~~~~p~vl~~~~~ve~~f~~~~ag~~~v~~~~~~i~~~~~~~~~~~~~~p~~~~~c~~~  250 (558)
T KOG2242|consen  184 LSKED-------------LGGQALYPHVLRKNCAVEGNFGQKAAGYEPVKEEYTFIQNYPLEERLRGPVGPETKKECEVF  250 (558)
T ss_pred             chhhh-------------ccCcccCcccccCcceeccccccccccccccchhhhhhhhcchhhcccCCCCccccccchhh
Confidence            64321             1355799999999999999999985 343333333344455544566666655 66789999


Q ss_pred             EEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHH-HHhcCCCeEE
Q 015668          270 MMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLS-RASRTPRNFI  348 (403)
Q Consensus       270 ll~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~-~al~~g~~vI  348 (403)
                      +|+|+||+||++|+-....+.+.+..-+.+.-.++..+...|.....++...+...++++..++..++. +++...+++|
T Consensus       251 ~~~g~~~~g~~~~~le~~~q~~~~~~~i~g~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~~~r~~~  330 (558)
T KOG2242|consen  251 MMRGLPGAGKTSWALEPAAQNPEKGGNILGGNTIMPKMRVVGLEEQTNDAFSRGYLIQQAGQCLNKLPRDIFLRKKRNYI  330 (558)
T ss_pred             hcccccccccchhhhhhhhhCccccCCccccccccCCcCcccchhhhhccccccchhhccccccccchhhhhhhhhhhhh
Confidence            999999999999999999988876544554445555544344322112222334566666666666665 7889999999


Q ss_pred             EeCCCCCHHHHHHHHHHHhcCCcEEEEEECChHHHHHHHHHhccccCccccc
Q 015668          349 IDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEQIM  400 (403)
Q Consensus       349 lD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~pe~~~~R~~~R~~~~g~~Vp~  400 (403)
                      +|.+|++.+.+.+.+..+..+.++..+++++++.+..+...|....+++|++
T Consensus       331 ~d~~~~s~~~~~r~~~~~~~~~~~~p~~~~~~~d~~s~~~v~~~~~~~d~~~  382 (558)
T KOG2242|consen  331 LDQTNLSSSAQRRKMGLFSQFSRKAPVVCPAFEDLKSRTIVRTEVEGKDVGE  382 (558)
T ss_pred             hhccccchhhceecccccccccccCCCcCCchhhhccccceEeeeecccCCc
Confidence            9999999998888888888887899999999999999999999888888874

>COG4639 Predicted kinase [General function prediction only]

Probab=99.78  E-value=8e-19  Score=151.63  Aligned_cols=124  Identities=23%  Similarity=0.244  Sum_probs=96.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhc-CCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV-PGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP  344 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~-~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g  344 (403)
                      ..+++|+|+|||||||||+++..+.     .+|+.|++|..++. .+..   ..+..|..    +-+.+..+++..+++|
T Consensus         2 ~~LvvL~G~~~sGKsT~ak~n~~~~-----~~lsld~~r~~lg~~~~~e---~sqk~~~~----~~~~l~~~l~qrl~~G   69 (168)
T COG4639           2 RILVVLRGASGSGKSTFAKENFLQN-----YVLSLDDLRLLLGVSASKE---NSQKNDEL----VWDILYKQLEQRLRRG   69 (168)
T ss_pred             ceEEEEecCCCCchhHHHHHhCCCc-----ceecHHHHHHHhhhchhhh---hccccHHH----HHHHHHHHHHHHHHcC
Confidence            4689999999999999999988764     46888999987743 2211   11122222    2223444556677999


Q ss_pred             CeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhccccCcccccc
Q 015668          345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEQIMF  401 (403)
Q Consensus       345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~~g~~Vp~~  401 (403)
                      +..||||||+.++.|++.++++..|+ ...+++|++| ++|.+||+.|.++++.+|++.
T Consensus        70 k~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~Rqv~~~VI~r  128 (168)
T COG4639          70 KFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRERQVPEEVIPR  128 (168)
T ss_pred             CeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccchhCCHHHHHH
Confidence            99999999999999999999999988 6667899999 899999999999999888764

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.76  E-value=1.3e-17  Score=144.36  Aligned_cols=122  Identities=24%  Similarity=0.322  Sum_probs=92.9

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF  347 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~v  347 (403)
                      ||+|||+|||||||||+.|.+.+.   +.+|+.|.++..+...... ...+...   ..+.+.+.+..++..+++.|.++
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~---~~~i~~D~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~l~~g~~~   73 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG---AVVISQDEIRRRLAGEDPP-SPSDYIE---AEERAYQILNAAIRKALRNGNSV   73 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST---EEEEEHHHHHHHHCCSSSG-CCCCCHH---HHHHHHHHHHHHHHHHHHTT-EE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC---CEEEeHHHHHHHHcccccc-cchhHHH---HHHHHHHHHHHHHHHHHHcCCCc
Confidence            799999999999999999999887   8899999999887532111 1111111   22333344555666777999999


Q ss_pred             EEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhccccCc
Q 015668          348 IIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGK  396 (403)
Q Consensus       348 IlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~~g~  396 (403)
                      |||+||..+..|..+.+.++.++ ++.+|+|+++ +++.+|+.+|.+..++
T Consensus        74 vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~  124 (143)
T PF13671_consen   74 VVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGDK  124 (143)
T ss_dssp             EEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCTT
T ss_pred             eeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCcccc
Confidence            99999999999998888888887 8889999998 8999999999987554

...

>KOG4030 consensus Uncharacterized conserved protein, contains SPRY domain [Function unknown]

Probab=99.74  E-value=8.9e-17  Score=136.95  Aligned_cols=164  Identities=22%  Similarity=0.279  Sum_probs=133.6

Q ss_pred             CCCCCC-CcEEeCcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCc
Q 015668           36 GPRSQK-QRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHV  114 (403)
Q Consensus        36 ~~~~~~-~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~  114 (403)
                      -++++. +.|.||......++.|-+.|+++++         .+++.|+.++...|-||||+|.+             .|.
T Consensus        20 ~~rl~e~P~V~LD~~hMG~dVvilk~g~RicG---------tGG~lAtaPlvQnKsYFevkiQ~-------------tG~   77 (197)
T KOG4030|consen   20 YPRLNEVPTVRLDVGHMGKDVVILKEGERICG---------TGGALATAPLVQNKSYFEVKIQQ-------------TGT   77 (197)
T ss_pred             chhhhcCCcEEeehhccCCcEEEEecCcEEec---------cCceeeeeeeecccceEEEEEee-------------cce
Confidence            344444 7899999999999999999999874         57899999999999999999985             489


Q ss_pred             EEEEEecCCCC--CCCCCCCCcceeEecCCceeeCCCcc---cCCCCCCCCCEEEEEEecCCCCCceEEEEeCccccccc
Q 015668          115 CRVGTSRGDDP--VGKLGETEQSFGFGGTGKFSHGGNFL---NFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA  189 (403)
Q Consensus       115 ~rVG~s~~~~~--~~~lG~d~~Sygy~~~G~~~~~~~~~---~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg~a  189 (403)
                      +.||.++++.+  ..+.|-|.+||+.+++|...|+....   +-..--.+|||||+..|-     -++.|+.||+.+-..
T Consensus        78 WgiGlat~q~~l~~~p~g~d~~sw~~r~dga~~hnnee~~r~pa~~~p~EGDvVGvayDH-----VELnfY~NGKn~e~p  152 (197)
T KOG4030|consen   78 WGIGLATKQSPLDKVPGGCDEKSWGIRDDGAIAHNNEEVARMPATVFPEEGDVVGVAYDH-----VELNFYVNGKNVEDP  152 (197)
T ss_pred             eeeeeeeccCccccCCCCCcceeEEEccCCchhcccHHHhcCccccCCccCcEEEEEeee-----EEEEEEEcCceeccc
Confidence            99999998875  45789999999999999999987643   111224799999999986     478999999999887


Q ss_pred             ccccCCCCCCccccchhhcccCCCceEeEEEEe-CeEEEEEccCCCCCCCcccceec
Q 015668          190 KQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVEQGLIPVEGYKSW  245 (403)
Q Consensus       190 f~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~-~~~v~~nFG~~~~~~p~~g~~p~  245 (403)
                      ++.   .               .+++||.|.+. ++-+.+.| .+|..-||+||..+
T Consensus       153 ~~g---v---------------RG~vyPvvYVddsAILD~~f-~nF~h~PPpGFe~I  190 (197)
T KOG4030|consen  153 ITG---V---------------RGPVYPVVYVDDSAILDLKF-KNFTHAPPPGFEEI  190 (197)
T ss_pred             ccc---c---------------ccceeeEEEeCCceEEEEEe-cccccCCCCChhhe
Confidence            761   1               56999999998 66677777 34555677888654

>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only]

Probab=99.69  E-value=2.3e-16  Score=143.51  Aligned_cols=168  Identities=23%  Similarity=0.358  Sum_probs=134.5

Q ss_pred             CCCCCCCCcEEeCcCCCCCCeEEcCCC-ceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCC
Q 015668           35 SGPRSQKQRVVLNPADCDLDFDIEDNG-LKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQH  113 (403)
Q Consensus        35 ~~~~~~~~~v~l~~~d~~~~l~is~d~-l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~  113 (403)
                      ++.......+.||+.|++.++.+-.++ ++.+-+.   .++...++|+..+...|.++|||.+.+.+          .+-
T Consensus        18 ~~~~~~~~~~~w~~~drs~nv~vk~~~~~tfhrhp---vaqstd~~rGk~g~~~g~h~w~i~w~~r~----------~GT   84 (242)
T KOG3953|consen   18 PSALGVQAQHGWSPSDRSLNVFVKLPDGLTFHRHP---VAQSTDGIRGKRGYSRGRHAWEIAWPNRQ----------RGT   84 (242)
T ss_pred             CcchhhHHhhccCcccccceeEEecCCcceEEecC---CccccccccceeeeccCceEEEEEecCCc----------cCC
Confidence            444445555999999999999998876 7765432   24558999999999999999999998743          234


Q ss_pred             cEEEEEecCCCC------CCCCCCCCcceeEe-cCCceeeCCCc-ccC-----CCCCCCCCEEEEEEecCCCCCceEEEE
Q 015668          114 VCRVGTSRGDDP------VGKLGETEQSFGFG-GTGKFSHGGNF-LNF-----GEKFGVGDTIICAIDLESKPLATIGFA  180 (403)
Q Consensus       114 ~~rVG~s~~~~~------~~~lG~d~~Sygy~-~~G~~~~~~~~-~~y-----G~~f~~gDVIGc~ldl~~~p~~~i~ft  180 (403)
                      +.-||.+|+.++      ...||++.+|||++ ++...+|++.. ..|     .+.|.++|-|.|.||++.   +++.|.
T Consensus        85 ~avVGIaTk~Aplha~gy~aLlGs~~qswGw~l~~~~l~H~g~~~~~yp~~~~~p~~~vp~ri~viLDm~e---gtl~F~  161 (242)
T KOG3953|consen   85 HAVVGIATKVAPLHAVGYTALLGSNSQSWGWDLGRNVLYHDGQVAGLYPALNRQPKYNVPDRILVILDMIE---GTLSFA  161 (242)
T ss_pred             cceEEEEcccCchhhhHHHHHhCCCCCccceecccceeeecCccccccccccCCchhcCCceEEEEEeecc---ceEEEE
Confidence            677999998775      45899999999998 55688888732 122     467999999999999999   899999


Q ss_pred             eCcccccccccccCCCCCCccccchhhcccCCCceEeEEEEe--CeEEEEEccCCCC
Q 015668          181 KNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQFSVEQG  235 (403)
Q Consensus       181 kNG~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~--~~~v~~nFG~~~~  235 (403)
                      ++|++||+||.      +|           .+..+||+||.-  ++++++.+=..+.
T Consensus       162 ~~~e~LGvAFR------gL-----------~~~~LYP~Vsav~g~~Evtm~Ylg~~~  201 (242)
T KOG3953|consen  162 ADGEYLGVAFR------GL-----------KDKKLYPAVSAVWGHCEVTMKYLGTLD  201 (242)
T ss_pred             ECCeEEeeeec------CC-----------CCCcceeeeeehhcceeEEEEEeCCcC
Confidence            99999999998      22           267999999985  8999998866544

>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]

Probab=99.69  E-value=5.1e-17  Score=172.13  Aligned_cols=147  Identities=29%  Similarity=0.462  Sum_probs=117.2

Q ss_pred             eeeEEe--cceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCC-CCCCCCCCCcceeEecC-CceeeCCCcc
Q 015668           76 WSGARA--NVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDD-PVGKLGETEQSFGFGGT-GKFSHGGNFL  151 (403)
Q Consensus        76 ~~~~Ra--~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~~~~-~~~~lG~d~~Sygy~~~-G~~~~~~~~~  151 (403)
                      ++-.|+  ++.|..|+||||.....             .|.+||||+...| |+..+|.|...|+|++. ++.+|.+ ..
T Consensus      1092 ~r~fr~eksyavkagkwyfefe~vt-------------~gdmrvgwarpgc~pd~elgadd~af~fdg~k~qrwhqg-~~ 1157 (5019)
T KOG2243|consen 1092 FRFFRAEKSYAVKAGKWYFEFETVT-------------AGDMRVGWARPGCQPDQELGADDQAFAFDGFKAQRWHQG-NE 1157 (5019)
T ss_pred             eEEEeeehhheeeccceEEEEEEee-------------ccceeecccCCCCCcchhhCCccceeeeccchhhhhhcc-cc
Confidence            333444  58889999999999874             5889999999887 57889999999999874 5666654 46


Q ss_pred             cCCCCCCCCCEEEEEEecCCCCCceEEEEeCcccccccccccCCCCCCccccchhhcccCCCceEeEEEEe-CeEEEEEc
Q 015668          152 NFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQF  230 (403)
Q Consensus       152 ~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~-~~~v~~nF  230 (403)
                      .||.+|+.||||||.||++.   .+|.||+||+.|-..-    + ..|++++.|+     +..|.|.+++. ...-++||
T Consensus      1158 ~~grswq~gdvvgcmi~l~d---~sm~ftlngeili~~~----g-selaf~d~di-----~~gfipic~lg~aqigrmn~ 1224 (5019)
T KOG2243|consen 1158 HFGRSWQAGDVVGCMIDLDD---ASMIFTLNGEILIDDK----G-SELAFADFDI-----EDGFIPICCLGLAQIGRMNF 1224 (5019)
T ss_pred             ccccccCCCCeEEEEEeccc---ceEEEEEcCeEEEcCC----C-Ceeeeccccc-----cCCceeeeehhhHhhccccc
Confidence            79999999999999999999   7999999999886531    1 2456666664     67899999998 66679999


Q ss_pred             cCCC---C----CCCcccceeccccc
Q 015668          231 SVEQ---G----LIPVEGYKSWVSAL  249 (403)
Q Consensus       231 G~~~---~----~~p~~g~~p~~~~~  249 (403)
                      |.+.   +    |-.++||.||+-++
T Consensus      1225 g~d~st~k~~ticglqeg~epfavn~ 1250 (5019)
T KOG2243|consen 1225 GKDASTFKFFTICGLQEGFEPFAVNM 1250 (5019)
T ss_pred             CCcccceeeeeeecccccCccceecc
Confidence            9873   3    34679999997654

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.62  E-value=4.1e-15  Score=154.32  Aligned_cols=103  Identities=21%  Similarity=0.273  Sum_probs=86.8

Q ss_pred             CCCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 015668          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR  342 (403)
Q Consensus       263 ~~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~  342 (403)
                      ...+++|+|+|+|||||||||++++..+.   +++||.|.+.                .++.+..        .+..+|+
T Consensus       366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g---~~~vn~D~lg----------------~~~~~~~--------~a~~~L~  418 (526)
T TIGR01663       366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAG---YKHVNADTLG----------------STQNCLT--------ACERALD  418 (526)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHcC---CeEECcHHHH----------------HHHHHHH--------HHHHHHh
Confidence            35689999999999999999999998865   8999999742                1222222        2345679


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      +|++||||+||+.++.|+++++++++++ ++.+++|++| ++|++|+..|..
T Consensus       419 ~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~  470 (526)
T TIGR01663       419 QGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL  470 (526)
T ss_pred             CCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence            9999999999999999999999999887 8889999998 899999999975

Note that the EC number for the kinase function is: 2.7.1.78

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.61  E-value=9.1e-15  Score=142.61  Aligned_cols=128  Identities=21%  Similarity=0.319  Sum_probs=93.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~  345 (403)
                      +.+|+|+|+|||||||+|++|++.++  .+.+|+.|.+++.+...+......|....+..   +......++..++..|.
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~--~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~g~   76 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNP--KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDL---VTKAQEAAALAALKSGK   76 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCC--CCEEEeccHHHHHhcCCCcccccccChHHHHH---HHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999984  27899999999876422211111222211211   22233445556678899


Q ss_pred             eEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhccccCcccccc
Q 015668          346 NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEQIMF  401 (403)
Q Consensus       346 ~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~~g~~Vp~~  401 (403)
                      +||+|+|+.++..|..+.+.++.++ .+.++++.++ +++++|+.+|.   ++.+|.+
T Consensus        77 ~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~---~~~~~~~  131 (300)
T PHA02530         77 SVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRG---ERAVPED  131 (300)
T ss_pred             eEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccC---cCCCCHH
Confidence            9999999999999988777777766 6778899888 89999999993   4556654

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.57  E-value=1.5e-14  Score=137.80  Aligned_cols=116  Identities=25%  Similarity=0.472  Sum_probs=88.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~  345 (403)
                      +|+|+|+|||||||+|+.|++.+..  ..+++++.|.+++.+..        +...++.   .+......++..++.++.
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~--------~~~~~e~---~~~~~~~~~i~~~l~~~~   69 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV--------WKEKYEE---FIRDSTLYLIKTALKNKY   69 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH--------hhHHhHH---HHHHHHHHHHHHHHhCCC
Confidence            5899999999999999999987642  24788899988876521        1111121   222233446667778899


Q ss_pred             eEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcccc
Q 015668          346 NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEM  394 (403)
Q Consensus       346 ~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~~  394 (403)
                      .||+|++|.+...|..+++.++.++ ++.+|++++| ++|++|+.+|....
T Consensus        70 ~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~  120 (249)
T TIGR03574        70 SVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKI  120 (249)
T ss_pred             eEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCC
Confidence            9999999999999998888887776 8888999998 89999999986543

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>COG0645 Predicted kinase [General function prediction only]

Probab=99.56  E-value=7.8e-14  Score=122.89  Aligned_cols=120  Identities=19%  Similarity=0.125  Sum_probs=93.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCc-c--cCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-R--KHNYSERFQCLMGRANAIFDVLLSRASRT  343 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~-~--~~~~~~~~~~~~~~a~~~~~~ll~~al~~  343 (403)
                      ++++|+|+||+||||+|+.+.+.++   .++|.+|.+|+.|...+.. +  ...|++.   ..+.+...+......++..
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lg---A~~lrsD~irk~L~g~p~~~r~~~g~ys~~---~~~~vy~~l~~~A~l~l~~   75 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLG---AIRLRSDVIRKRLFGVPEETRGPAGLYSPA---ATAAVYDELLGRAELLLSS   75 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcC---ceEEehHHHHHHhcCCcccccCCCCCCcHH---HHHHHHHHHHHHHHHHHhC
Confidence            6899999999999999999999998   7999999999998631111 1  1123332   2222223333444556799


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      |.+||+|+|+..+..|....+.+..-+ ++.++.++.| +.+..|...|..
T Consensus        76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~  126 (170)
T COG0645          76 GHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG  126 (170)
T ss_pred             CCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence            999999999999999998888888777 8999999998 789999999975

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.55  E-value=1.7e-14  Score=130.30  Aligned_cols=126  Identities=21%  Similarity=0.284  Sum_probs=89.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccE--EEeccHHHHHHhhcCCCcccCCChHHHHH-HHHHHHHHHHHHHHHHhcC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLGTNLILEQMKVPGLLRKHNYSERFQC-LMGRANAIFDVLLSRASRT  343 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~--v~ls~D~ir~~l~~~g~~~~~~~~~~~~~-~~~~a~~~~~~ll~~al~~  343 (403)
                      .+|++.|+|||||||+|+.|++.+..+.|  ++++.|..+-      ...+.+ .+.+.+ +.+...+....++..|++ 
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~------i~~DEs-lpi~ke~yres~~ks~~rlldSalk-   73 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRG------ILWDES-LPILKEVYRESFLKSVERLLDSALK-   73 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhh------eecccc-cchHHHHHHHHHHHHHHHHHHHHhc-
Confidence            58999999999999999999998876543  5555554331      111111 122322 333222223336667766 


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhccccCccccc
Q 015668          344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEQIM  400 (403)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~~g~~Vp~  400 (403)
                      ..-||+|+||.+.++|+.+...++.+. .++++++-+| +.|++||..|....+.+|.+
T Consensus        74 n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~ergepip~Evl~  132 (261)
T COG4088          74 NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPIPEEVLR  132 (261)
T ss_pred             ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCCCCCHHHHH
Confidence            789999999999999999888888776 8999999998 99999997776655555543

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=99.54  E-value=1.6e-14  Score=138.83  Aligned_cols=123  Identities=24%  Similarity=0.306  Sum_probs=80.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP  344 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g  344 (403)
                      -||+|||+|||||||+|++|.+.+..  ..+++++.|.+.-.   ..     .|...  ...+.++..+...+++++.+.
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~---~~-----~y~~~--~~Ek~~R~~l~s~v~r~ls~~   71 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGID---RN-----DYADS--KKEKEARGSLKSAVERALSKD   71 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-T---TS-----SS--G--GGHHHHHHHHHHHHHHHHTT-
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccc---hh-----hhhch--hhhHHHHHHHHHHHHHhhccC
Confidence            48999999999999999999886543  24677887765511   11     12111  122233344566777788999


Q ss_pred             CeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhccc--cCcccc
Q 015668          345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKE--MGKEQI  399 (403)
Q Consensus       345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~--~g~~Vp  399 (403)
                      ..||+|++|.++++|..+++.++.++ .+++|++.+| +.|++||.+|...  +..+++
T Consensus        72 ~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i  130 (270)
T PF08433_consen   72 TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETI  130 (270)
T ss_dssp             SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHH
T ss_pred             eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHH
Confidence            99999999999999999999999888 8999999998 9999999999864  444443

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK06762 hypothetical protein; Provisional

Probab=99.52  E-value=5.2e-14  Score=125.47  Aligned_cols=114  Identities=17%  Similarity=0.174  Sum_probs=81.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~  345 (403)
                      +.+|+|+|+|||||||+|++|++.++. .+++++.|.++..+.  +...... ...++        .+..++..++..|.
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~-~~~~i~~D~~r~~l~--~~~~~~~-~~~~~--------~~~~~~~~~~~~g~   69 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGR-GTLLVSQDVVRRDML--RVKDGPG-NLSID--------LIEQLVRYGLGHCE   69 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC-CeEEecHHHHHHHhc--cccCCCC-CcCHH--------HHHHHHHHHHhCCC
Confidence            579999999999999999999998853 378899999998763  1110000 01111        12223334567899


Q ss_pred             eEEEeCCCCCHHHHHHHHHHHh-cCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          346 NFIIDQTNVFKSARKRKLRLFV-NFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       346 ~vIlD~Tn~~~~~R~~~~~~~~-~~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      +||+|+++.....|.. ++.+. .++ ++.+|++++| ++|++|+.+|..
T Consensus        70 ~vild~~~~~~~~~~~-~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~  118 (166)
T PRK06762         70 FVILEGILNSDRYGPM-LKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK  118 (166)
T ss_pred             EEEEchhhccHhHHHH-HHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc
Confidence            9999999877766654 44444 444 7889999998 999999999975

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=99.50  E-value=5.6e-14  Score=129.37  Aligned_cols=138  Identities=17%  Similarity=0.160  Sum_probs=90.3

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCc-ccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-RKHNYSERFQCLMGRANAIFDVLLSRASR  342 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~-~~~~~~~~~~~~~~~a~~~~~~ll~~al~  342 (403)
                      ..|.+++|.|.|||||||++..+...+....+++|+.|.+|..+...... .... ..........+..+...+++.++.
T Consensus        13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~a~~   91 (199)
T PF06414_consen   13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADP-DEASELTQKEASRLAEKLIEYAIE   91 (199)
T ss_dssp             SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHC-CCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            56999999999999999999999998732348999999988754210000 0000 001123344566677788889999


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcccc------Cccccccc
Q 015668          343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEM------GKEQIMFC  402 (403)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~~------g~~Vp~~~  402 (403)
                      ++.++|+|.|+..++.-.++++.+++.+ ++.++++.+| ++.+.|+.+|..+.      |+.||.+.
T Consensus        92 ~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~~~~~~g~GR~v~~~~  159 (199)
T PF06414_consen   92 NRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYEEGLQAKGIGRFVPEEK  159 (199)
T ss_dssp             CT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHHHHC-C-TT-----HCC
T ss_pred             cCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHHccccccCCCcCCCHHH
Confidence            9999999999988887777888898866 8888888887 89999999998877      88888764

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=99.42  E-value=3.1e-12  Score=119.22  Aligned_cols=128  Identities=20%  Similarity=0.211  Sum_probs=81.7

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHhhcCCCcccCCCh---HHHHHHHH-HHHHHHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYS---ERFQCLMG-RANAIFDVLL  337 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l~~~g~~~~~~~~---~~~~~~~~-~a~~~~~~ll  337 (403)
                      ....+|+||||||+|||++|++|++.+.=  -...++|..+.|.++..... ....+.   .......+ .|..++..++
T Consensus        10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~-~~~ff~p~n~~~~~~R~~~a~~~l~dl~   88 (222)
T PF01591_consen   10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQ-DAEFFDPDNEEAKKLREQIAKEALEDLI   88 (222)
T ss_dssp             ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S--GGGGSTT-HHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceeccccccc-ccccCCCCChHHHHHHHHHHHHHHHHHH
Confidence            35689999999999999999999987761  12466777778777653211 111111   22222333 3556788888


Q ss_pred             HHHh-cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECC---hHHHHHHHHHhccc
Q 015668          338 SRAS-RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK---PEDLKIRSVKRFKE  393 (403)
Q Consensus       338 ~~al-~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~---pe~~~~R~~~R~~~  393 (403)
                      ..+. ..|+..|+|+||.+++.|+.+++.+.+.+ +.++++++   +++++++|.++...
T Consensus        89 ~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~-~~vlFIEsic~D~~ii~~NI~~~~~  147 (222)
T PF01591_consen   89 EWLQEEGGQVAIFDATNSTRERRKMLVERFKEHG-IKVLFIESICDDPEIIERNIREKKQ  147 (222)
T ss_dssp             HHHHTS--SEEEEES---SHHHHHHHHHHHHHTT--EEEEEEEE---HHHHHHHHHHHHT
T ss_pred             HHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcC-CcEEEEEEEeCCHHHHHHHHHHHHc
Confidence            8777 78999999999999999998888888765 44444444   36888888877653

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.42  E-value=1.7e-12  Score=116.93  Aligned_cols=123  Identities=15%  Similarity=0.152  Sum_probs=82.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCc-c-cCCChH----HHHHHHHHHHHHHHHHHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-R-KHNYSE----RFQCLMGRANAIFDVLLSRA  340 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~-~-~~~~~~----~~~~~~~~a~~~~~~ll~~a  340 (403)
                      .+|+|+|+|||||||+|+.|++.++. .+++++.|.++..+...... . ...+..    .-+...++....+...+..+
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~   81 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLAE-PWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAAM   81 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCC-CccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHHH
Confidence            58999999999999999999988753 37788999888765311000 0 000000    00122233334445556667


Q ss_pred             hcCCCeEEEeCCCC-CHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668          341 SRTPRNFIIDQTNV-FKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       341 l~~g~~vIlD~Tn~-~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      ++.|.+||+|+++. ....|+ .++.+.. .++.+|++.+| +++.+|+.+|..
T Consensus        82 l~~G~~VIvD~~~~~~~~~r~-~~~~~~~-~~~~~v~l~~~~~~l~~R~~~R~~  133 (175)
T cd00227          82 ARAGANVIADDVFLGRAALQD-CWRSFVG-LDVLWVGVRCPGEVAEGRETARGD  133 (175)
T ss_pred             HhCCCcEEEeeeccCCHHHHH-HHHHhcC-CCEEEEEEECCHHHHHHHHHhcCC
Confidence            89999999999988 455454 3444433 26888899887 899999999864

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.39  E-value=2.9e-12  Score=112.17  Aligned_cols=113  Identities=15%  Similarity=0.162  Sum_probs=75.9

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh----cCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK----VPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT  343 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~----~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~  343 (403)
                      +|+|+|+|||||||+|+.+.+.+.   +.+++.|.++..+.    ..|...  . ....+........   ......+..
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~---~~~i~~D~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~---~~~~~l~~~   71 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLG---APFIDGDDLHPPANIAKMAAGIPL--N-DEDRWPWLQALTD---ALLAKLASA   71 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcC---CEEEeCcccccHHHHHHHHcCCCC--C-ccchhhHHHHHHH---HHHHHHHhC
Confidence            589999999999999999999875   67889998876311    123211  1 1111112222211   111122257


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668          344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      +.++|+|+++..+..|..+.+.+  ++ .+.+|+|.+| +++++|+..|.
T Consensus        72 ~~~vVid~~~~~~~~r~~~~~~~--~~~~~~~v~l~~~~~~~~~R~~~R~  119 (150)
T cd02021          72 GEGVVVACSALKRIYRDILRGGA--ANPRVRFVHLDGPREVLAERLAARK  119 (150)
T ss_pred             CCCEEEEeccccHHHHHHHHhcC--CCCCEEEEEEECCHHHHHHHHHhcc
Confidence            88999999999988887544333  34 7888999997 89999999995

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.34  E-value=1.4e-11  Score=108.34  Aligned_cols=112  Identities=17%  Similarity=0.160  Sum_probs=77.6

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHHHhcCC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASRTP  344 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~al~~g  344 (403)
                      +|+|+|+|||||||+|+.+...+..  ..+++++.|.+++.+..  ..   .+.. ...+.++++    .......++.|
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~--~~---~~~~~~~~~~~~~~----~~~a~~l~~~G   71 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNK--DL---GFSREDREENIRRI----AEVAKLLADAG   71 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhh--cc---CCCcchHHHHHHHH----HHHHHHHHhCC
Confidence            5899999999999999999988732  23677899999886631  11   1111 111122221    12333345789


Q ss_pred             CeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHH
Q 015668          345 RNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK  389 (403)
Q Consensus       345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~  389 (403)
                      .+||+|+++..+..|..+.+.+. ..++.++++.+| ++|++|+.+
T Consensus        72 ~~VIid~~~~~~~~R~~~~~l~~-~~~~~~i~l~~~~e~~~~R~~~  116 (149)
T cd02027          72 LIVIAAFISPYREDREAARKIIG-GGDFLEVFVDTPLEVCEQRDPK  116 (149)
T ss_pred             CEEEEccCCCCHHHHHHHHHhcC-CCCEEEEEEeCCHHHHHHhCch
Confidence            99999999999998876544443 338889999998 899999876

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.34  E-value=6.7e-12  Score=110.68  Aligned_cols=114  Identities=20%  Similarity=0.191  Sum_probs=75.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHHHhc
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASR  342 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~al~  342 (403)
                      +.+|+|+|+|||||||+|+.+.+.+..  ...++|+.|.+|..|.  ..+   .|+. ...+.+.++.    ++...+.+
T Consensus         2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~--~dl---~fs~~dR~e~~rr~~----~~A~ll~~   72 (156)
T PF01583_consen    2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLN--ADL---GFSKEDREENIRRIA----EVAKLLAD   72 (156)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTT--TT-----SSHHHHHHHHHHHH----HHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccC--CCC---CCCHHHHHHHHHHHH----HHHHHHHh
Confidence            579999999999999999999877643  2478899999887653  111   2221 1122222322    23444568


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHH
Q 015668          343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK  389 (403)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~  389 (403)
                      +|..||++...++++.|...-+.+.. .++..||+++| ++|++|+.+
T Consensus        73 ~G~ivIva~isp~~~~R~~~R~~~~~-~~f~eVyv~~~~e~~~~RD~K  119 (156)
T PF01583_consen   73 QGIIVIVAFISPYREDREWARELIPN-ERFIEVYVDCPLEVCRKRDPK  119 (156)
T ss_dssp             TTSEEEEE----SHHHHHHHHHHHHT-TEEEEEEEES-HHHHHHHTTT
T ss_pred             CCCeEEEeeccCchHHHHHHHHhCCc-CceEEEEeCCCHHHHHHhCch
Confidence            99999999999999999864444443 37888999999 999999743

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.32  E-value=3.7e-11  Score=110.46  Aligned_cols=130  Identities=14%  Similarity=0.161  Sum_probs=88.2

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhc-CCC---cccCCChHHH------------HHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV-PGL---LRKHNYSERF------------QCLMGR  328 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~-~g~---~~~~~~~~~~------------~~~~~~  328 (403)
                      .+.+|+++|+|||||||+|+.++..+.-  ..++++|.+|+.+.. .+.   .....| ..|            ....++
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~--~~~~~~D~~r~~~r~~~~~~p~l~~s~~-~a~~~~~~~~~~~~~~~y~~q   78 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAI--DIVLSGDYLREFLRPYVDDEPVLAKSVY-DAWEFYGSMTDENIVKGYLDQ   78 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCC--eEEehhHHHHHHHHHhcCCCCCcccccH-HHHHHcCCcchhHHHHHHHHH
Confidence            3679999999999999999999998763  467999999988752 111   001111 011            111222


Q ss_pred             ---HHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECChHHHHHHHHHhccccCcccccc
Q 015668          329 ---ANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKPEDLKIRSVKRFKEMGKEQIMF  401 (403)
Q Consensus       329 ---a~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~pe~~~~R~~~R~~~~g~~Vp~~  401 (403)
                         +...+..+++.++.+|.++|+|++++.+..+..    ....+ .+.++++++++++++|...|....++..|.+
T Consensus        79 ~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~----~~~~~v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~  151 (197)
T PRK12339         79 ARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDE----NRTNNIRAFYLYIRDAELHRSRLADRINYTHKNSPGK  151 (197)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHH----HHhcCeEEEEEEeCCHHHHHHHHHHHhhcccCCCcHH
Confidence               223355677778899999999999999987642    22222 2334556667899999999998777777654

>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]

Probab=99.31  E-value=6.5e-13  Score=141.69  Aligned_cols=152  Identities=24%  Similarity=0.339  Sum_probs=112.2

Q ss_pred             cceeeEEec--ceecCC-----EEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCC----C-------CCCCCCCCcc
Q 015668           74 YCWSGARAN--VGINGG-----KYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDD----P-------VGKLGETEQS  135 (403)
Q Consensus        74 ~~~~~~Ra~--~gv~~G-----~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~~~~----~-------~~~lG~d~~S  135 (403)
                      ...+++|.|  .||..|     +||||..|++..|.   -  .-+..|+||||+..+.    |       ...+|+|-+|
T Consensus       656 n~vss~rpniflgvaegsaqykkwy~el~id~~dpf---~--tae~thlrvgwass~gyap~pggge~wggngvgddl~s  730 (5019)
T KOG2243|consen  656 NDVSSIRPNIFLGVAEGSAQYKKWYFELIIDHTDPF---L--TAEATHLRVGWASSEGYAPCPGGGEEWGGNGVGDDLFS  730 (5019)
T ss_pred             hhhhhcCCceeEeeccchHHHHHHHHHHhhhcCCcc---e--ecccceeeeeeeccCCCCCCCCCcccccCCCccchhhh
Confidence            356778888  466665     89999999876442   1  1246799999987543    2       3589999999


Q ss_pred             eeEecCCceeeC---CCcccCCCCCCCCCEEEEEEecCCCCCceEEEEeCcccccccccccCCCCCCccccchhhcccCC
Q 015668          136 FGFGGTGKFSHG---GNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCE  212 (403)
Q Consensus       136 ygy~~~G~~~~~---~~~~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg~af~~~~~~~~l~~~~~~~~g~~~~  212 (403)
                      |||++-.-+...   ....+--.-....|||.|++|+-.   ..|+|..||++..--|+...                ..
T Consensus       731 ygfdglhlwsg~i~r~vas~nqhllrsddvisccldl~~---psisfringqpvqgmfenfn----------------~d  791 (5019)
T KOG2243|consen  731 YGFDGLHLWSGCIARAVASPNQHLLRSDDVISCCLDLGA---PSISFRINGQPVQGMFENFN----------------ID  791 (5019)
T ss_pred             cCCCcchhhcccchhhhcChhhhhhcccchhhhhhhcCC---CceEEEECCccchhHHhcCC----------------Cc
Confidence            999763222111   111222335788999999999987   69999999999766676321                26


Q ss_pred             CceEeEEEEe-CeEEEEEccCC---CCCCCcccceeccccc
Q 015668          213 SAVFPHILLK-NVVVVMQFSVE---QGLIPVEGYKSWVSAL  249 (403)
Q Consensus       213 ~~~fP~v~l~-~~~v~~nFG~~---~~~~p~~g~~p~~~~~  249 (403)
                      +-|||.+++. +..|++-+|.+   ++|.||+||.|+..++
T Consensus       792 glffpv~sfsagikvrfllggrhgefkflpp~gyapcyea~  832 (5019)
T KOG2243|consen  792 GLFFPVMSFSAGIKVRFLLGGRHGEFKFLPPPGYAPCYEAL  832 (5019)
T ss_pred             ceeeeeEeeccCeEEEEEecccccceeecCCCCCccHHHHh
Confidence            7899999998 99999999986   5788999999997754

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.27  E-value=6.8e-11  Score=107.30  Aligned_cols=115  Identities=20%  Similarity=0.178  Sum_probs=80.4

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRA  340 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~a  340 (403)
                      ..+.+|+|+|+|||||||+|+.+...+...  ..++++.|.+++.|.  +.   ..|.. .....+..+    ..+...+
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~--~~---~~~~~~~~~~~~~~~----~~~~~~~   86 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLN--KD---LGFSEEDRKENIRRI----GEVAKLF   86 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhc--cc---cCCCHHHHHHHHHHH----HHHHHHH
Confidence            457899999999999999999999876422  267899999998763  21   11221 111122222    2233345


Q ss_pred             hcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 015668          341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV  388 (403)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~  388 (403)
                      ++.|.+||+|+++..+..|..+.+.+.. .++.+|++++| +++.+|+.
T Consensus        87 ~~~G~~VI~d~~~~~~~~r~~~~~~~~~-~~~~~v~l~~~~e~~~~R~~  134 (184)
T TIGR00455        87 VRNGIIVITSFISPYRADRQMVRELIEK-GEFIEVFVDCPLEVCEQRDP  134 (184)
T ss_pred             HcCCCEEEEecCCCCHHHHHHHHHhCcC-CCeEEEEEeCCHHHHHHhCc
Confidence            6899999999999999998764444443 36788999998 88999854

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=99.25  E-value=9.4e-11  Score=114.98  Aligned_cols=153  Identities=13%  Similarity=0.176  Sum_probs=116.6

Q ss_pred             EEeCcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCC
Q 015668           44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGD  123 (403)
Q Consensus        44 v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~~~  123 (403)
                      ++|++--+...+.+|.+.+++++-     ...++.|.+..++..|.+||||+|+...          ....+.||++...
T Consensus       535 fqlt~spsqrdmilsnecatlsgs-----sleyrtilgsiafskgvhywevtidrhd----------gnsdivigvaqpa  599 (699)
T KOG4367|consen  535 FQLTPSPSQRDMILSNECATLSGS-----SLEYRTILGSIAFSKGVHYWEVTIDRHD----------GNSDIVIGVAQPA  599 (699)
T ss_pred             eeccCCchhhceeeecccceeccc-----ccchheeeeecccccceeEEEEEEeccC----------CCCCceEEecchh
Confidence            345555566679999998877654     3679999999999999999999999752          2456889999854


Q ss_pred             C-CCCCCCCCCcceeEecCCc--ee-eCCCcc-cCCCCCCCCCEEEEEEecCCCCCceEEEEeCccccc-ccccccCCCC
Q 015668          124 D-PVGKLGETEQSFGFGGTGK--FS-HGGNFL-NFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLG-TAKQFDAGSN  197 (403)
Q Consensus       124 ~-~~~~lG~d~~Sygy~~~G~--~~-~~~~~~-~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg-~af~~~~~~~  197 (403)
                      . .+..+|-|.+.|..--+|.  ++ ||.... .---..+.|-|||+.||++.   ++|.||.|.+..+ .||.   +  
T Consensus       600 vnrnvmlgkdlhgwsmyvdgerswylhnethhnrvlggvtrgtvigvrldcdr---gtmeytvndrqddsmaft---n--  671 (699)
T KOG4367|consen  600 VNRNVMLGKDLHGWSMYVDGERSWYLHNETHHNRVLGGVTRGTVIGVRLDCDR---GTMEYTVNDRQDDSMAFT---N--  671 (699)
T ss_pred             hhhceeecccccceeEEEcCcceeEEeccccccccccccccccEEEEEEeccC---CceEEEeccccCCceeee---c--
Confidence            3 2568999999999755554  43 454332 22235789999999999999   8999999998664 4665   2  


Q ss_pred             CCccccchhhcccCCCceEeEEEEe-CeEEEEEccC
Q 015668          198 GLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSV  232 (403)
Q Consensus       198 ~l~~~~~~~~g~~~~~~~fP~v~l~-~~~v~~nFG~  232 (403)
                              |     .+-||||+++. |..+++.-|-
T Consensus       672 --------m-----rglyypafsvnanssitvhtgl  694 (699)
T KOG4367|consen  672 --------M-----RGLYYPAFSVNANSSITVHTGL  694 (699)
T ss_pred             --------c-----cceeeeeeEeccCceEEEecCC
Confidence                    2     56899999998 8899888774

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=99.24  E-value=1.1e-10  Score=103.51  Aligned_cols=119  Identities=19%  Similarity=0.180  Sum_probs=84.3

Q ss_pred             CCCCceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHHHHHhhcCCCcccCCCh-HHHHHHHHHHHHHHHHHHH
Q 015668          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYS-ERFQCLMGRANAIFDVLLS  338 (403)
Q Consensus       262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~ir~~l~~~g~~~~~~~~-~~~~~~~~~a~~~~~~ll~  338 (403)
                      ..+.+.+|+|+||+||||||+|..+.+.+-..  ...+|+.|.+|.-|.     ++..|+ ....+.+.+....    ..
T Consensus        19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~-----~dLgFs~edR~eniRRvaev----Ak   89 (197)
T COG0529          19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLN-----RDLGFSREDRIENIRRVAEV----AK   89 (197)
T ss_pred             hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhccc-----CCCCCChHHHHHHHHHHHHH----HH
Confidence            33557999999999999999999998877643  467899999998663     122232 2222233333222    22


Q ss_pred             HHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 015668          339 RASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR  390 (403)
Q Consensus       339 ~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R  390 (403)
                      ...++|-.+|+-...++++.|+...+.+. -+++.-||+++| ++|.+|..|-
T Consensus        90 ll~daG~iviva~ISP~r~~R~~aR~~~~-~~~FiEVyV~~pl~vce~RDpKG  141 (197)
T COG0529          90 LLADAGLIVIVAFISPYREDRQMARELLG-EGEFIEVYVDTPLEVCERRDPKG  141 (197)
T ss_pred             HHHHCCeEEEEEeeCccHHHHHHHHHHhC-cCceEEEEeCCCHHHHHhcCchH
Confidence            33588999999999999999986333333 347888999999 9999998654

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.23  E-value=4.4e-11  Score=106.19  Aligned_cols=109  Identities=15%  Similarity=0.158  Sum_probs=71.4

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh----hcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM----KVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP  344 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l----~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g  344 (403)
                      |+|+|+|||||||+|+.+++.+.   ..+++.|.+....    ...|..  ......+. ....+    ...+..++..+
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~---~~~v~~D~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~----~~~~~~~l~~~   70 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG---AKFIEGDDLHPAANIEKMSAGIP--LNDDDRWP-WLQNL----NDASTAAAAKN   70 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC---CeEEeCccccChHHHHHHHcCCC--CChhhHHH-HHHHH----HHHHHHHHhcC
Confidence            57899999999999999999986   5778889863211    012321  01111111 12221    12233345667


Q ss_pred             CeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668          345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      .++|||+|++.+..|.. +   ..++ .+.+++|.+| +++++|+..|.
T Consensus        71 ~~~Vi~~t~~~~~~r~~-~---~~~~~~~~~i~l~~~~e~~~~R~~~R~  115 (163)
T TIGR01313        71 KVGIITCSALKRHYRDI-L---REAEPNLHFIYLSGDKDVILERMKARK  115 (163)
T ss_pred             CCEEEEecccHHHHHHH-H---HhcCCCEEEEEEeCCHHHHHHHHHhcc
Confidence            77899999987777653 3   3444 6778899887 89999999996

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=99.23  E-value=6.5e-11  Score=117.01  Aligned_cols=131  Identities=17%  Similarity=0.202  Sum_probs=84.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCC---CccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHH-------------
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANA-------------  331 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~-------------  331 (403)
                      +++++|+|||||||+++.+.+.+.   +....+++.|++..+....+.. ..+-...|....+.+.+             
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~-~~~~~~~~k~~R~~i~~~le~~v~a~~~g~   79 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQ-SREIPSQWKQFRQELLKYLEHFLVAVINGS   79 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhc-CCCcHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            468999999999999999986653   1235778888755211000000 00111122111111111             


Q ss_pred             -----------------------------------HHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEE
Q 015668          332 -----------------------------------IFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVV  375 (403)
Q Consensus       332 -----------------------------------~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv  375 (403)
                                                         ....++..++.++..+|+|++|..+++|..++++++.++ .+.+|
T Consensus        80 ~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V  159 (340)
T TIGR03575        80 ELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQL  159 (340)
T ss_pred             cccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence                                               112223334466678999999999999999888888887 89999


Q ss_pred             EECCh-HHHHHHHHHhccccCcccc
Q 015668          376 VFPKP-EDLKIRSVKRFKEMGKEQI  399 (403)
Q Consensus       376 ~l~~p-e~~~~R~~~R~~~~g~~Vp  399 (403)
                      +|++| +++++||.+|...++.+|+
T Consensus       160 ~ld~ple~~l~RN~~R~~~v~devi  184 (340)
T TIGR03575       160 FLDCPVESCLLRNKQRPVPLPDETI  184 (340)
T ss_pred             EEeCCHHHHHHHHhcCCCCCCHHHH
Confidence            99998 8999999999765554443

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.19  E-value=2.5e-10  Score=103.12  Aligned_cols=117  Identities=25%  Similarity=0.307  Sum_probs=75.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEecc-HHHHHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR  342 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~-D~ir~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al~  342 (403)
                      +|+++|+|||||||+|+++++.++   +.+|+. |.+|+.+. .+.    ..+...+.+.+.    -.+....++..++.
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~---~~~is~~d~lr~~~~-~~~----~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~   72 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFG---FTHLSAGDLLRAEIK-SGS----ENGELIESMIKNGKIVPSEVTVKLLKNAIQ   72 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC---CeEEECChHHHHHHh-cCC----hHHHHHHHHHHCCCcCCHHHHHHHHHHHHh
Confidence            589999999999999999999986   788987 56677654 221    111111111110    00112233333332


Q ss_pred             --CCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          343 --TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       343 --~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                        .++.+|||....+...+..+.+.+.... .-.++++++| +++++|..+|..
T Consensus        73 ~~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~  126 (183)
T TIGR01359        73 ADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ  126 (183)
T ss_pred             ccCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence              2678999998888877776555554322 3347899997 789999999865

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.13  E-value=3e-10  Score=98.96  Aligned_cols=125  Identities=16%  Similarity=0.061  Sum_probs=91.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~  345 (403)
                      +.+.+|.|+.||||||+.......+.. ..+++|+|.+-.++.  .   . +  +. ...++ |.+.+...+..+++.++
T Consensus         2 ~~l~IvaG~NGsGKstv~~~~~~~~~~-~~~~VN~D~iA~~i~--p---~-~--p~-~~~i~-A~r~ai~~i~~~I~~~~   70 (187)
T COG4185           2 KRLDIVAGPNGSGKSTVYASTLAPLLP-GIVFVNADEIAAQIS--P---D-N--PT-SAAIQ-AARVAIDRIARLIDLGR   70 (187)
T ss_pred             ceEEEEecCCCCCceeeeeccchhhcC-CeEEECHHHHhhhcC--C---C-C--ch-HHHHH-HHHHHHHHHHHHHHcCC
Confidence            578899999999999997776555543 589999999877642  1   1 1  11 11222 22333445566779999


Q ss_pred             eEEEeCCCCCHHHHHHHHHHHhcCC---cEEEEEECChHHHHHHHHHhccccCccccccc
Q 015668          346 NFIIDQTNVFKSARKRKLRLFVNFR---KIAVVVFPKPEDLKIRSVKRFKEMGKEQIMFC  402 (403)
Q Consensus       346 ~vIlD~Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~pe~~~~R~~~R~~~~g~~Vp~~~  402 (403)
                      .++.+.|...++.++ +++.++..+   ...+++++.++..++|.+.|..++||+||++.
T Consensus        71 ~F~~ETtLS~~s~~~-~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~  129 (187)
T COG4185          71 PFIAETTLSGPSILE-LIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDK  129 (187)
T ss_pred             CcceEEeeccchHHH-HHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHH
Confidence            999999988888776 577776544   23346778889999999999999999999874

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.13  E-value=6.9e-10  Score=99.80  Aligned_cols=112  Identities=17%  Similarity=0.202  Sum_probs=74.2

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR  342 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~  342 (403)
                      ..++|+|+|+|||||||+|+.++..+...  .+.+++.|.+++.+. .+..  .. ....+...+++.    .+....+.
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~-~~~~--~~-~~~r~~~~~~~~----~~a~~~~~   74 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLS-KGLG--FS-KEDRDTNIRRIG----FVANLLTR   74 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHh-cCCC--CC-hhhHHHHHHHHH----HHHHHHHh
Confidence            46899999999999999999998876422  367789999887764 2211  00 111122222221    12222346


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 015668          343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS  387 (403)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~  387 (403)
                      .|.+||+|+++.++..|+.+.+ ..  .++.+|++++| +++.+|+
T Consensus        75 ~g~~vi~~~~~~~~~~~~~l~~-~~--~~~~~v~l~~~~e~~~~R~  117 (175)
T PRK00889         75 HGVIVLVSAISPYRETREEVRA-NI--GNFLEVFVDAPLEVCEQRD  117 (175)
T ss_pred             CCCEEEEecCCCCHHHHHHHHh-hc--CCeEEEEEcCCHHHHHHhC
Confidence            7999999999888777764322 22  26788999998 8888986

>PRK14527 adenylate kinase; Provisional

Probab=99.07  E-value=1.6e-09  Score=98.93  Aligned_cols=121  Identities=25%  Similarity=0.348  Sum_probs=74.5

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH-HHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-EQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLS  338 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir-~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~  338 (403)
                      +.+.+|+++|+|||||||+|+.+++.+.   +.+++.|++. +.+. .+.    ........++..    ....+..++.
T Consensus         4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~---~~~is~gd~~r~~~~-~~~----~~~~~~~~~~~~g~~~p~~~~~~l~~   75 (191)
T PRK14527          4 TKNKVVIFLGPPGAGKGTQAERLAQELG---LKKLSTGDILRDHVA-RGT----ELGQRAKPIMEAGDLVPDELILALIR   75 (191)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC---CCCCCccHHHHHHHh-cCc----HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            3578999999999999999999999886   6788886654 4332 111    011111111110    0112223333


Q ss_pred             HHhcC--CCeEEEeCCCCCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHhcc
Q 015668          339 RASRT--PRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       339 ~al~~--g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      ..+.+  +..+|||...-+..++..+-..+...+ .. .++++++| +++++|..+|..
T Consensus        76 ~~l~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~  134 (191)
T PRK14527         76 DELAGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERAR  134 (191)
T ss_pred             HHHhcCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcc
Confidence            33332  457999986556666654444444444 33 56789997 899999999964

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.06  E-value=1.5e-09  Score=114.74  Aligned_cols=116  Identities=17%  Similarity=0.234  Sum_probs=84.9

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCC-c--cEEEeccHHHHHHhhcCCCcccCCChHH-HHHHHHHHHHHHHHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE-K--RYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSR  339 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~-~--~~v~ls~D~ir~~l~~~g~~~~~~~~~~-~~~~~~~a~~~~~~ll~~  339 (403)
                      +...+|+|+|+|||||||+|+.++..+.. .  ....++.|.+|+.|.  |..   .|... .+....++.    .+...
T Consensus       390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~--ge~---~f~~~er~~~~~~l~----~~a~~  460 (568)
T PRK05537        390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS--SEL---GFSKEDRDLNILRIG----FVASE  460 (568)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc--CCC---CCCHHHHHHHHHHHH----HHHHH
Confidence            45789999999999999999999998863 2  258899999988763  321   23221 122222221    12233


Q ss_pred             HhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 015668          340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV  388 (403)
Q Consensus       340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~  388 (403)
                      .++.|..+|+|+++.++..|..+.+.+++.+.+.+|++++| +++.+|+.
T Consensus       461 v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~r  510 (568)
T PRK05537        461 ITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDR  510 (568)
T ss_pred             HHhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhcc
Confidence            45889999999999999999988888876556778899998 89999974

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=99.06  E-value=1.4e-09  Score=97.97  Aligned_cols=123  Identities=21%  Similarity=0.252  Sum_probs=77.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcc---cCCCh---HHHHHHHHHHHHHHHHHHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLR---KHNYS---ERFQCLMGRANAIFDVLLSRA  340 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~---~~~~~---~~~~~~~~~a~~~~~~ll~~a  340 (403)
                      ++|+|-|.|.|||||+|+.|.+.++. .|++++-|.+++.|.. +...   ...+.   +............+...+...
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~-p~~~l~~D~f~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~   79 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPE-PWLHLSVDTFVDMMPP-GRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAM   79 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS--EEEEEHHHHHHHS-G-GGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcC-CeEEEecChHHhhcCc-ccccCCccccccccCCchhHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999864 6999999999886541 1100   00001   101223333334455566666


Q ss_pred             hcCCCeEEEeCCCCCHHH-HHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668          341 SRTPRNFIIDQTNVFKSA-RKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~-R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      .+.|.+||+|.....+.. +..+-+.+..+ ++.+|-|-+| +++.+|...|..
T Consensus        80 a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~-~vl~VgV~Cpleil~~RE~~RgD  132 (174)
T PF07931_consen   80 ARAGNNVIVDDVFLGPRWLQDCLRRLLAGL-PVLFVGVRCPLEILERRERARGD  132 (174)
T ss_dssp             HHTT-EEEEEE--TTTHHHHHHHHHHHTTS--EEEEEEE--HHHHHHHHHHHTS
T ss_pred             HhCCCCEEEecCccCcHHHHHHHHHHhCCC-ceEEEEEECCHHHHHHHHHhcCC
Confidence            799999999998777664 33322445543 8888888887 899999999974

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PRK14532 adenylate kinase; Provisional

Probab=99.05  E-value=2.2e-09  Score=97.61  Aligned_cols=114  Identities=24%  Similarity=0.306  Sum_probs=72.8

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccHH-HHHHhhcCCCcccCCChHHHHHHHH--------HHHHHHHHHHHH
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYSERFQCLMG--------RANAIFDVLLSR  339 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~-ir~~l~~~g~~~~~~~~~~~~~~~~--------~a~~~~~~ll~~  339 (403)
                      |+|+|+|||||||+|+++++.++   +.+|++|+ +|+++. .+..    .+.....+++        ...+++...+..
T Consensus         3 i~~~G~pGsGKsT~a~~la~~~g---~~~is~~d~lr~~~~-~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   74 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVEERG---MVQLSTGDMLRAAIA-SGSE----LGQRVKGIMDRGELVSDEIVIALIEERLPE   74 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC---CeEEeCcHHHHHHHH-cCCH----HHHHHHHHHHCCCccCHHHHHHHHHHHHhC
Confidence            78899999999999999999986   78999955 455442 2210    0111111111        111122222211


Q ss_pred             HhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHhc
Q 015668          340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~p-e~~~~R~~~R~  391 (403)
                       ...+..+|+|...-+..+++.+.+.+...+ .. .+++|++| +++++|..+|.
T Consensus        75 -~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~  128 (188)
T PRK14532         75 -AEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRF  128 (188)
T ss_pred             -cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCc
Confidence             235778999998888877776545555544 33 67889997 78999999885

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.03  E-value=4e-09  Score=94.91  Aligned_cols=114  Identities=20%  Similarity=0.162  Sum_probs=72.8

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHh
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS  341 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al  341 (403)
                      +.+.+|+++|+|||||||+|+.+.+.+..  ..++.++.|.+++.+...|      +... .. .+.+. ....+.....
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~------~~~~-~~-~~~~~-~~~~l~~~l~   75 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYG------YDKQ-SR-IEMAL-KRAKLAKFLA   75 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCC------CCHH-HH-HHHHH-HHHHHHHHHH
Confidence            35789999999999999999999887742  2367888899888653222      1111 11 11111 1112222234


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHH
Q 015668          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK  389 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~  389 (403)
                      ..|.+||+|.++..+..+.......   .+..+||++++ +++++|+.+
T Consensus        76 ~~g~~VI~~~~~~~~~~~~~~~~~~---~~~~~v~l~~~~e~~~~R~~~  121 (176)
T PRK05541         76 DQGMIVIVTTISMFDEIYAYNRKHL---PNYFEVYLKCDMEELIRRDQK  121 (176)
T ss_pred             hCCCEEEEEeCCcHHHHHHHHHhhc---CCeEEEEEeCCHHHHHHhchh
Confidence            6889999999987655444322111   14567899987 899999875

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.00  E-value=4e-09  Score=113.40  Aligned_cols=113  Identities=16%  Similarity=0.162  Sum_probs=79.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHhhcCCCcccCCChHH-HHHHHHHHHHHHHHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSRAS  341 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l~~~g~~~~~~~~~~-~~~~~~~a~~~~~~ll~~al  341 (403)
                      .+.+|+|+|+|||||||+|+.+++.+..  ..+++|+.|.+|..+. .+    ..|... ....++++.    .+....+
T Consensus       459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~-~~----~~~~~~~r~~~~~~l~----~~a~~~~  529 (632)
T PRK05506        459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLN-RD----LGFSDADRVENIRRVA----EVARLMA  529 (632)
T ss_pred             CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccC-CC----CCCCHHHHHHHHHHHH----HHHHHHH
Confidence            4899999999999999999999988632  2468899999998653 12    123321 222222221    2333345


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 015668          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS  387 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~  387 (403)
                      +.|.+||+|+++..+..|..+.+.+.+ ..+.++|+++| +++++|+
T Consensus       530 ~~G~~Vivda~~~~~~~R~~~r~l~~~-~~~~~v~L~~~~e~~~~R~  575 (632)
T PRK05506        530 DAGLIVLVSFISPFREERELARALHGE-GEFVEVFVDTPLEVCEARD  575 (632)
T ss_pred             hCCCEEEEECCCCCHHHHHHHHHhccc-CCeEEEEECCCHHHHHhhC
Confidence            889999999999999988754433332 36788999998 8899986

>PRK14531 adenylate kinase; Provisional

Probab=98.99  E-value=2.2e-09  Score=97.51  Aligned_cols=117  Identities=20%  Similarity=0.292  Sum_probs=73.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEecc-HHHHHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR  342 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~-D~ir~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al~  342 (403)
                      -|+++|+|||||||+++.+++.+.   +.+|+. |.+|+++. .+.    ..+.....++.+    .......++...+.
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~g---~~~is~gd~lr~~~~-~~~----~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~   75 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAHG---LRHLSTGDLLRSEVA-AGS----ALGQEAEAVMNRGELVSDALVLAIVESQLK   75 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CCeEecccHHHHHHh-cCC----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            488999999999999999999986   778888 66677653 111    111111111110    00111122221221


Q ss_pred             --CCCeEEEeCCCCCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHhcc
Q 015668          343 --TPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       343 --~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~p-e~~~~R~~~R~~  392 (403)
                        .+..+|||...-+..+++.+-+.+...+ .+ .++++++| +++++|...|.+
T Consensus        76 ~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r  130 (183)
T PRK14531         76 ALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGR  130 (183)
T ss_pred             hccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCC
Confidence              3567999999888877765444455444 33 46788887 799999998854

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=98.97  E-value=7.5e-10  Score=101.41  Aligned_cols=119  Identities=20%  Similarity=0.206  Sum_probs=83.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCcc---EEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKR---YILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT  343 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~---~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~  343 (403)
                      -+|++||+|.|||||.|+.|...+.++.   .+.|..|+.   +   |..+..+|...  ..++.++-.++..+++-+.+
T Consensus         2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des---l---g~~~ns~y~~s--~~EK~lRg~L~S~v~R~Lsk   73 (281)
T KOG3062|consen    2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES---L---GIEKNSNYGDS--QAEKALRGKLRSAVDRSLSK   73 (281)
T ss_pred             CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh---c---CCCCccccccc--HHHHHHHHHHHHHHHhhccc
Confidence            4799999999999999999987665432   455555542   3   32222233321  12222333455566777899


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhccc
Q 015668          344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKE  393 (403)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~  393 (403)
                      +..||+|+-|..+-.|-.+....+... ..++|++.+| +.|.+.|.+|...
T Consensus        74 ~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p  125 (281)
T KOG3062|consen   74 GDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDP  125 (281)
T ss_pred             CcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCC
Confidence            999999999999998887665555544 6788888888 8999999988764

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.93  E-value=2.2e-08  Score=102.06  Aligned_cols=127  Identities=12%  Similarity=0.172  Sum_probs=89.0

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcC--CC-ccc---CCCh------------------
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVP--GL-LRK---HNYS------------------  319 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~--g~-~~~---~~~~------------------  319 (403)
                      ..+.+|+++|+||+||||.|.+++..+.-  ..+|++|.+|+.|...  .. .+.   +.|.                  
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~--~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~  330 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGI--TRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTR  330 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCC--cEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccch
Confidence            35899999999999999999999999873  2478999998876421  10 000   0111                  


Q ss_pred             -HHHHHHHHHHHHH---HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cE--EEEEECChHHHHHHHHHhcc
Q 015668          320 -ERFQCLMGRANAI---FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KI--AVVVFPKPEDLKIRSVKRFK  392 (403)
Q Consensus       320 -~~~~~~~~~a~~~---~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~--~vv~l~~pe~~~~R~~~R~~  392 (403)
                       .-.....+++...   ++.+++.++..|.++|||..|+.+..+..    ....+ .+  .++++++.++.++|...|.+
T Consensus       331 ~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~----~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~  406 (475)
T PRK12337        331 AEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRH----PYQAGALVVPMLVTLPDEALHRRRFELRDR  406 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHH----HHhcCCceEEEEEEECCHHHHHHHHHHHhh
Confidence             0011233455544   77889999999999999999999987652    22222 22  24677888999999999987


Q ss_pred             ccCc
Q 015668          393 EMGK  396 (403)
Q Consensus       393 ~~g~  396 (403)
                      ..+.
T Consensus       407 ~~~~  410 (475)
T PRK12337        407 ETGA  410 (475)
T ss_pred             hccC
Confidence            5543

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=98.92  E-value=2.2e-08  Score=91.01  Aligned_cols=117  Identities=21%  Similarity=0.213  Sum_probs=70.8

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHhc--
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR--  342 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al~--  342 (403)
                      |+++|+|||||||+|+.|++.+.   +.+|+.|++..+....+.    ............    -...+..++..++.  
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~---~~~i~~~~l~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~   74 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYG---LPHISTGDLLREEIASGT----ELGKKAKEYIDSGKLVPDEIVIKLLKERLKKP   74 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC---CeEEECcHHHHHHHhcCC----hHHHHHHHHHHcCCccCHHHHHHHHHHHHhcc
Confidence            78999999999999999999876   788888765443211110    011111111110    00122334433333  


Q ss_pred             -CCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          343 -TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       343 -~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                       .++.+|+|...-+......+.+.+.... ...+|++++| +++++|..+|..
T Consensus        75 ~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~  127 (194)
T cd01428          75 DCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI  127 (194)
T ss_pred             cccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence             3678999986666665554333333222 5567888887 799999999963

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PLN02200 adenylate kinase family protein

Probab=98.91  E-value=2.5e-08  Score=94.22  Aligned_cols=119  Identities=19%  Similarity=0.241  Sum_probs=72.3

Q ss_pred             CCCCceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc-HHHHHHhhcCCCcccCCChHHHHHHH--------HHHHHH
Q 015668          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQMKVPGLLRKHNYSERFQCLM--------GRANAI  332 (403)
Q Consensus       262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~-D~ir~~l~~~g~~~~~~~~~~~~~~~--------~~a~~~  332 (403)
                      ....+.+|+++|+|||||||+|+++++.++   +.+|+. |.+|+++.. ..    ..+......+        +.....
T Consensus        39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g---~~his~gdllR~~i~~-~s----~~~~~i~~~~~~G~~vp~e~~~~~  110 (234)
T PLN02200         39 KEKTPFITFVLGGPGSGKGTQCEKIVETFG---FKHLSAGDLLRREIAS-NS----EHGAMILNTIKEGKIVPSEVTVKL  110 (234)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhC---CeEEEccHHHHHHHhc-cC----hhHHHHHHHHHcCCCCcHHHHHHH
Confidence            345678999999999999999999999886   678888 555666531 10    0011101110        111111


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          333 FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      +...+.  ...+..+|||....+...+.. +..+.+...-.+++++++ +++++|..+|.
T Consensus       111 l~~~l~--~~~~~~~ILDG~Prt~~q~~~-l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~  167 (234)
T PLN02200        111 IQKEME--SSDNNKFLIDGFPRTEENRIA-FERIIGAEPNVVLFFDCPEEEMVKRVLNRN  167 (234)
T ss_pred             HHHHHh--cCCCCeEEecCCcccHHHHHH-HHHHhccCCCEEEEEECCHHHHHHHHHcCc
Confidence            122221  123567999997666555543 333333334457788887 78999999885

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.91  E-value=1.9e-08  Score=92.44  Aligned_cols=115  Identities=16%  Similarity=0.118  Sum_probs=77.8

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHh
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS  341 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al  341 (403)
                      ..+.+|+|+|+|||||||+|+.+...+..  .+.+.++.|.++..+.. ..  .+..... ...+.+    +..+...++
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~-~~--~~~~~~~-~~~~~~----l~~~a~~~~   93 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCS-DL--GFSDADR-KENIRR----VGEVAKLMV   93 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhh-cC--CcCcccH-HHHHHH----HHHHHHHHh
Confidence            45789999999999999999999987642  23688988888866431 11  1111111 111111    222333456


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 015668          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS  387 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~  387 (403)
                      ..|.+||.+..+..++.|..+++.+.+ ..+.+||+++| +++.+|.
T Consensus        94 ~~G~~VI~~~~~~~~~~R~~~r~~l~~-~~~i~V~L~~~~e~~~~R~  139 (198)
T PRK03846         94 DAGLVVLTAFISPHRAERQMVRERLGE-GEFIEVFVDTPLAICEARD  139 (198)
T ss_pred             hCCCEEEEEeCCCCHHHHHHHHHHccc-CCEEEEEEcCCHHHHHhcC
Confidence            789999988888889999876555544 35667999998 8888883

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.88  E-value=2.6e-08  Score=89.94  Aligned_cols=116  Identities=23%  Similarity=0.331  Sum_probs=70.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHH--------HHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMG--------RANAIFDV  335 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~--------~a~~~~~~  335 (403)
                      ++.+|+++|+|||||||+++.+++.+.   +.+++.+++ |+.+. .+.    ..........+        .+.+.+..
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g---~~~~~~g~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~   73 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIVEKYG---FTHLSTGDLLRAEVA-SGS----ERGKQLQAIMESGDLVPLDTVLDLLKD   73 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHHHh-cCC----HHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence            467999999999999999999999875   678888654 45432 111    00011011110        11122222


Q ss_pred             HHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhc-CC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          336 LLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       336 ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      .+..++..+..||+|...-+.....    .+.. .. ...++++++| +.+.+|..+|..
T Consensus        74 ~~~~~~~~~~~~i~dg~~~~~~q~~----~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~  129 (188)
T TIGR01360        74 AMVAALGTSKGFLIDGYPREVKQGE----EFERRIGPPTLVLYFDCSEDTMVKRLLKRAE  129 (188)
T ss_pred             HHHcccCcCCeEEEeCCCCCHHHHH----HHHHcCCCCCEEEEEECCHHHHHHHHHcccc
Confidence            2323356789999998654433222    2322 23 4567889997 789999998864

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK01184 hypothetical protein; Provisional

Probab=98.81  E-value=6.2e-08  Score=87.71  Aligned_cols=119  Identities=18%  Similarity=0.166  Sum_probs=65.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEecc-HHHHHHhhcCCCccc-CCChHHHHHHHHH-HHHHHHHHHHHHh--
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQMKVPGLLRK-HNYSERFQCLMGR-ANAIFDVLLSRAS--  341 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~-D~ir~~l~~~g~~~~-~~~~~~~~~~~~~-a~~~~~~ll~~al--  341 (403)
                      .+|+|+|+|||||||+++ +++++.   +.++++ |.+|+.+...+.... ..+........+. ....+..++...+  
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g---~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~   77 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMG---IPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIRE   77 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcC---CcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHh
Confidence            589999999999999987 667665   667776 566776532232110 0011110111111 0011111111112  


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      ..+..||+|.. ......+. ++.... ....+|++.+| +++++|...|.+
T Consensus        78 ~~~~~vvidg~-r~~~e~~~-~~~~~~-~~~~~i~v~~~~~~~~~Rl~~R~~  126 (184)
T PRK01184         78 KGDEVVVIDGV-RGDAEVEY-FRKEFP-EDFILIAIHAPPEVRFERLKKRGR  126 (184)
T ss_pred             cCCCcEEEeCC-CCHHHHHH-HHHhCC-cccEEEEEECCHHHHHHHHHHcCC
Confidence            34688999987 34443332 222211 25567888887 899999998864

>TIGR01351 adk adenylate kinases

Probab=98.80  E-value=3.8e-08  Score=91.27  Aligned_cols=114  Identities=22%  Similarity=0.279  Sum_probs=67.2

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccHH-HHHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHhc-
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR-  342 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~-ir~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al~-  342 (403)
                      |+++|+|||||||+|+.|++.+.   +.+|+.++ +|+.+.. +.    ..+......++.    -......++...+. 
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g---~~~is~gdllr~~~~~-~~----~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~   73 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYG---LPHISTGDLLRAEIKA-GT----PLGKKAKEYMEKGELVPDEIVNQLVKERLTQ   73 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC---CCeeehhHHHHHhhcc-cc----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence            68899999999999999999886   78888855 4554421 10    001111111110    00112223322222 


Q ss_pred             ---CCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          343 ---TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       343 ---~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                         .++.+|||...-+..+.+. +..+.......+++++.| +.+++|...|.
T Consensus        74 ~~~~~~~~ilDGfPrt~~Qa~~-l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~  125 (210)
T TIGR01351        74 NQDNENGFILDGFPRTLSQAEA-LDALLKEKIDAVIELDVPDEELVERLSGRR  125 (210)
T ss_pred             CcccCCcEEEeCCCCCHHHHHH-HHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence               2678999996555554443 322222124467899998 78999999985

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=98.79  E-value=3.1e-08  Score=88.37  Aligned_cols=104  Identities=13%  Similarity=0.118  Sum_probs=65.4

Q ss_pred             EccCCCChhHHHHHHHHhCCCccEEEeccHHH------HHHhhcCCCcccCCChHH-HHHHHHHHHHHHHHHHHHHhcCC
Q 015668          272 VGLPASGKTTWAEKWVKDHPEKRYILLGTNLI------LEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSRASRTP  344 (403)
Q Consensus       272 ~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i------r~~l~~~g~~~~~~~~~~-~~~~~~~a~~~~~~ll~~al~~g  344 (403)
                      +|+|||||||+++.++..+.   .+.|+.|.+      +..  ..|..    ++.. ..............   .+...+
T Consensus         1 ~G~sGsGKSTla~~la~~l~---~~~~~~d~~~~~~~~~~~--~~g~~----~~~~~~~~~~~~~~~~~~~---~~~~~~   68 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLH---AAFLDGDFLHPRRNIEKM--ASGEP----LNDDDRKPWLQALNDAAFA---MQRTNK   68 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhC---CeEEeCccCCchhhhccc--cCCCC----CChhhHHHHHHHHHHHHHH---HHHcCC
Confidence            59999999999999999986   578888863      221  12321    1111 11111121111111   123455


Q ss_pred             CeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      ..||+ .|++.+..|..    +++.+ ++.+|+|.+| +++++|+.+|..
T Consensus        69 ~~viv-~s~~~~~~r~~----~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~  113 (163)
T PRK11545         69 VSLIV-CSALKKHYRDL----LREGNPNLSFIYLKGDFDVIESRLKARKG  113 (163)
T ss_pred             ceEEE-EecchHHHHHH----HHccCCCEEEEEEECCHHHHHHHHHhccC
Confidence            56666 89987776653    44444 7999999998 899999999973

>PRK12338 hypothetical protein; Provisional

Probab=98.79  E-value=1.5e-07  Score=92.21  Aligned_cols=125  Identities=19%  Similarity=0.205  Sum_probs=80.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCc---c---cCCChHHHH---------------
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL---R---KHNYSERFQ---------------  323 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~---~---~~~~~~~~~---------------  323 (403)
                      .+.+|+++|.|||||||+|+.+++.++-  ..++++|.+|+.+......   +   .+.|. .|.               
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~~--~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~-a~~~l~~~~~~~~~~~~i   79 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLNI--KHLIETDFIREVVRGIIGKEYAPALHKSSYN-AYTALRDKENFKNNEELI   79 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCCC--eEEccChHHHHHHcCCCCcccCchhhcccHH-HHhhcCCcccccchHHHH
Confidence            4689999999999999999999999873  2345899999876421110   0   01111 111               


Q ss_pred             --HHHHHHH---HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECC-hHHHHHHHHHhcccc
Q 015668          324 --CLMGRAN---AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK-PEDLKIRSVKRFKEM  394 (403)
Q Consensus       324 --~~~~~a~---~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~-pe~~~~R~~~R~~~~  394 (403)
                        ...+++.   ..+..+++++++.|.++||+..++.+.....  ..+.....+.++++-. .++.++|...|.+..
T Consensus        80 ~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~--~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~  154 (319)
T PRK12338         80 CAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDI--EQFEENASIHFFILSADEEVHKERFVKRAMEI  154 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhh--hhhcccCceEEEEEECCHHHHHHHHHHhhhcc
Confidence              1122333   3345577888899999999999999975542  1121212454444434 489999999987543

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=98.78  E-value=3.3e-08  Score=85.88  Aligned_cols=122  Identities=18%  Similarity=0.196  Sum_probs=86.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-----HHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-----LEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA  340 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-----r~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~a  340 (403)
                      .-+|++.|..||||||.++.+.+++.   +-.+..|++     +++|. .|..  .+...+|.++.....     .+..+
T Consensus        12 k~~i~vmGvsGsGKSTigk~L~~~l~---~~F~dgDd~Hp~~NveKM~-~Gip--LnD~DR~pWL~~i~~-----~~~~~   80 (191)
T KOG3354|consen   12 KYVIVVMGVSGSGKSTIGKALSEELG---LKFIDGDDLHPPANVEKMT-QGIP--LNDDDRWPWLKKIAV-----ELRKA   80 (191)
T ss_pred             ceeEEEEecCCCChhhHHHHHHHHhC---CcccccccCCCHHHHHHHh-cCCC--CCcccccHHHHHHHH-----HHHHH
Confidence            56889999999999999999999997   667777753     67775 4542  234566776544332     22233


Q ss_pred             hcCCCeEEEeCCCCCHHHHHHHHHHHhcC-----C--cEEEEEECCh-HHHHHHHHHhccccCcccccc
Q 015668          341 SRTPRNFIIDQTNVFKSARKRKLRLFVNF-----R--KIAVVVFPKP-EDLKIRSVKRFKEMGKEQIMF  401 (403)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~-----~--~~~vv~l~~p-e~~~~R~~~R~~~~g~~Vp~~  401 (403)
                      +..|+-||+--..+.+.+|.-+...++.+     .  .+.+|++... |++++|+.+|.   ||..|.+
T Consensus        81 l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~---gHFMp~~  146 (191)
T KOG3354|consen   81 LASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRK---GHFMPAD  146 (191)
T ss_pred             hhcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcc---cccCCHH
Confidence            45899999998888888887444334422     1  4567788887 99999999997   4655543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.77  E-value=7.7e-08  Score=103.99  Aligned_cols=126  Identities=21%  Similarity=0.160  Sum_probs=80.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHHHHHhhcCCCcccCCChHHHHHH-HHHHHHHHHHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYSERFQCL-MGRANAIFDVLLSRAS  341 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~-~~~a~~~~~~ll~~al  341 (403)
                      ...+++|+|+||+||||+|++|++.+.-.  ...+++.+.+|+++...+.. ..... ..... .+.+..++..+....+
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~-~~~~~-~~~~~e~~~~~~~~~d~~~~v~  291 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGA-VSSPT-GAAEVEFRIAKAIAHDMTTFIC  291 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCC-cCCCC-CHHHHHHHHHHHHHHHHHHHHh
Confidence            35789999999999999999999987411  14566678888876422211 11001 11111 2223333444555556


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHhcCCc---EEEEEEC---ChHHHHHHHHHhcc
Q 015668          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRK---IAVVVFP---KPEDLKIRSVKRFK  392 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~---~~vv~l~---~pe~~~~R~~~R~~  392 (403)
                      ..|..+|+|+||.+...|+.+++.+++.+.   ..+++++   ++++.+++|..|..
T Consensus       292 ~~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~  348 (664)
T PTZ00322        292 KTDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAK  348 (664)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHH
Confidence            778899999999999988888888886541   2333333   35677788887754

>PRK00279 adk adenylate kinase; Reviewed

Probab=98.76  E-value=8.3e-08  Score=89.32  Aligned_cols=116  Identities=19%  Similarity=0.219  Sum_probs=68.8

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH-HHHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR  342 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~-ir~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al~  342 (403)
                      -|+++|+|||||||+|+.+++.+.   +.+|+.++ +++.+. .+.    ..+.....++..    -......++...+.
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~---~~~is~~dl~r~~~~-~~~----~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~   73 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYG---IPHISTGDMLRAAVK-AGT----ELGKEAKSYMDAGELVPDEIVIGLVKERLA   73 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CcEEECCccHHHHHh-ccc----hHHHHHHHHHHcCCcCCHHHHHHHHHHHHh
Confidence            378899999999999999999987   78888854 455543 111    011111111111    00112223322222


Q ss_pred             ---CCCeEEEeCCCCCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHhc
Q 015668          343 ---TPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       343 ---~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~p-e~~~~R~~~R~  391 (403)
                         .+..+|||...-+..+...+-+.+...+ .. .++++++| +.+++|...|.
T Consensus        74 ~~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~  128 (215)
T PRK00279         74 QPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRR  128 (215)
T ss_pred             ccCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCc
Confidence               2347999996555554443333344444 33 67889998 78999999985

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.72  E-value=1.3e-07  Score=82.61  Aligned_cols=107  Identities=19%  Similarity=0.188  Sum_probs=61.3

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASRTPRNF  347 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~al~~g~~v  347 (403)
                      |+|+|+|||||||+|+.+++.+.   +..++.|.++.++.  +......+.. .++...+.    ..+++..+...+ ++
T Consensus         2 i~l~G~~GsGKstla~~la~~l~---~~~~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~----e~~~~~~~~~~~-~~   71 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALG---LPFVDLDELIEQRA--GMSIPEIFAEEGEEGFREL----EREVLLLLLTKE-NA   71 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhC---CCEEEchHHHHHHc--CCCHHHHHHHHCHHHHHHH----HHHHHHHHhccC-Cc
Confidence            78999999999999999999986   77888998877653  2110000000 00111111    112333333444 45


Q ss_pred             EEeCCC---CCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          348 IIDQTN---VFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       348 IlD~Tn---~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      ||+...   .....    .+.+..  ...+||+.+| +++++|..+|.
T Consensus        72 vi~~g~~~i~~~~~----~~~~~~--~~~~i~l~~~~e~~~~R~~~r~  113 (154)
T cd00464          72 VIATGGGAVLREEN----RRLLLE--NGIVVWLDASPEELLERLARDK  113 (154)
T ss_pred             EEECCCCccCcHHH----HHHHHc--CCeEEEEeCCHHHHHHHhccCC
Confidence            555322   22222    122332  3457888888 78899998885

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]

Probab=98.72  E-value=3.3e-08  Score=101.65  Aligned_cols=159  Identities=20%  Similarity=0.181  Sum_probs=113.6

Q ss_pred             cEEeCcCCCCC-CeEEcCCCceEEecCCCCcccceeeEEecceec--CCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEE
Q 015668           43 RVVLNPADCDL-DFDIEDNGLKSSGLHQEGFAYCWSGARANVGIN--GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGT  119 (403)
Q Consensus        43 ~v~l~~~d~~~-~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~--~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~  119 (403)
                      ...||+.+..- ..+++.|...+............+.+-++..+.  .|.||||+.|.+..          ..+.+.||.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~gi~f~~~~~~~~~dvg~~~~~~~~~~N~~~~~Fe~~i~d~g----------~~~~i~i~~  100 (469)
T KOG1477|consen   31 PCEVNTINGSDFFTKNGPDMGIAFYTPPALLYHDVGVVQAGEPLPANFGIYYFEFDILDYG----------IEGRIKIGF  100 (469)
T ss_pred             cceEeccCCceeEEEEcCCcceeeecCccccCCCcceeeCCCCCCcccccceeeeeHHHhh----------hhhceEEEE
Confidence            56888888744 445666665554332222223444455555554  57999999999653          457888998


Q ss_pred             ecCCCC-CCCCCCCCcceeEec-CCceee-CC-CcccCCCCCCCCCEEEEEEecCCCCCceEEEEeCcccccccccccCC
Q 015668          120 SRGDDP-VGKLGETEQSFGFGG-TGKFSH-GG-NFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAG  195 (403)
Q Consensus       120 s~~~~~-~~~lG~d~~Sygy~~-~G~~~~-~~-~~~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg~af~~~~~  195 (403)
                      ...... ....|+...||+|++ +|.+.+ .. ....|+++|+.||.|||.++...   .+|+|++||..+|.+++-   
T Consensus       101 ~~~~~~~~~~~g~~~~s~~y~g~~g~l~~~~~~~~~~~~~~~~~~D~ig~~~~~~~---q~i~~t~~g~~~~~~~~~---  174 (469)
T KOG1477|consen  101 LIDSFSIIESEGYTMNSLGYHGNSGLLDNGGAELGEEFGPTFTTGDEIGCGINEIT---QEIFFTKNGTEVGEIIKP---  174 (469)
T ss_pred             EecccccccccchhhhhhcccCCchhhhhhhhhhchhhcCCCCccceeeeccchhh---heeeeccCcccccccccc---
Confidence            876654 567899999999976 566666 22 34689999999999999999997   799999999999999762   


Q ss_pred             CCCCccccchhhcccCCCceEeE----EEE-e-CeEEEEEccC
Q 015668          196 SNGLGVVDSAVKERQCESAVFPH----ILL-K-NVVVVMQFSV  232 (403)
Q Consensus       196 ~~~l~~~~~~~~g~~~~~~~fP~----v~l-~-~~~v~~nFG~  232 (403)
                      +               ...+||.    +.+ . +..|.+|||.
T Consensus       175 ~---------------~~~~~~~~~n~~~~~s~~~~I~~~~g~  202 (469)
T KOG1477|consen  175 L---------------SPDLLEENGNLAWLFSPNEEVEVNFGL  202 (469)
T ss_pred             c---------------cccccccccceeeEeccCceeeeeecC
Confidence            1               2234444    444 3 8999999994

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.72  E-value=1.2e-07  Score=85.74  Aligned_cols=110  Identities=16%  Similarity=0.203  Sum_probs=68.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH------HHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI------LEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSR  339 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i------r~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~  339 (403)
                      .++++++|++||||||+++.++..+.   ...++.|.+      +...  .|....  ....+. ....+......++  
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~---~~~i~gd~~~~~~~~r~~~--~g~~~~--~~~~~~-~~~~~~~~~~~~~--   72 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFS---AKFIDGDDLHPAKNIDKMS--QGIPLT--DEDRLP-WLERLNDASYSLY--   72 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC---CEEECCcccCCHhHHHHHh--cCCCCC--cccchH-HHHHHHHHHHHHH--
Confidence            46899999999999999999998876   467777763      2221  232111  011111 1112211111221  


Q ss_pred             HhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668          340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                       ......+|+ .|++.+..|..    +.+.. ++.+++|+++ +++++|+.+|.
T Consensus        73 -~~~~~g~iv-~s~~~~~~R~~----~r~~~~~~~~v~l~a~~~~l~~Rl~~R~  120 (176)
T PRK09825         73 -KKNETGFIV-CSSLKKQYRDI----LRKSSPNVHFLWLDGDYETILARMQRRA  120 (176)
T ss_pred             -hcCCCEEEE-EEecCHHHHHH----HHhhCCCEEEEEEeCCHHHHHHHHhccc
Confidence             112334555 88888777763    34444 7899999997 89999999996

>PRK14530 adenylate kinase; Provisional

Probab=98.69  E-value=1.6e-07  Score=87.41  Aligned_cols=117  Identities=16%  Similarity=0.166  Sum_probs=67.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH-HHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-EQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR  342 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir-~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al~  342 (403)
                      .|+++|+|||||||+|+.|++.+.   +.+|+++++. +............++.. ...+..    -......++..++.
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~---~~~i~~g~~lr~~~~~~~~~~~~~~~~~-~~~~~~g~~~~d~~~~~~l~~~l~   80 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFG---VEHVTTGDALRANKQMDISDMDTEYDTP-GEYMDAGELVPDAVVNEIVEEALS   80 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CeEEeccHHHHHhccCCcccccchHHHH-HHHHHcCCCCCHHHHHHHHHHHHh
Confidence            478899999999999999999986   6777776654 43210000000011110 111110    01123344444455


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      +...+|+|.-..+....+ .++.+.  ..-.+++++.| +.+++|..+|.
T Consensus        81 ~~~~~IldG~pr~~~q~~-~l~~~~--~~d~vI~Ld~~~~~l~~Rl~~R~  127 (215)
T PRK14530         81 DADGFVLDGYPRNLEQAE-YLESIT--DLDVVLYLDVSEEELVDRLTGRR  127 (215)
T ss_pred             cCCCEEEcCCCCCHHHHH-HHHHhc--CCCEEEEEeCCHHHHHHHHhCCC
Confidence            567899997434443332 332221  23457889998 78999999885

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.65  E-value=4.2e-08  Score=82.30  Aligned_cols=34  Identities=24%  Similarity=0.490  Sum_probs=29.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir  304 (403)
                      +|+++|+|||||||+|++|++.+.   +.+++.|.++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~---~~~i~~d~~~   34 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG---FPVISMDDLI   34 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT---CEEEEEHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC---CeEEEecceE
Confidence            689999999999999999999875   6778888853

...

>PRK00625 shikimate kinase; Provisional

Probab=98.63  E-value=2.6e-07  Score=83.30  Aligned_cols=113  Identities=16%  Similarity=0.106  Sum_probs=61.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHH-HHHHHHHHHHHhcCCCe
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRA-NAIFDVLLSRASRTPRN  346 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a-~~~~~~ll~~al~~g~~  346 (403)
                      .|+|+|+|||||||+++.+++.+.   +.+++.|.+.++..  |..-......-++..-+.. .+.-..++..+ .....
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~---~~~id~D~~I~~~~--g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l-~~~~~   75 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLS---LPFFDTDDLIVSNY--HGALYSSPKEIYQAYGEEGFCREEFLALTSL-PVIPS   75 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CCEEEhhHHHHHHh--CCCCCCCHHHHHHHHCHHHHHHHHHHHHHHh-ccCCe
Confidence            489999999999999999999986   67888898765421  2100000011111110011 01111223222 33334


Q ss_pred             EEEeC--CCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668          347 FIIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       347 vIlD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      ||...  +.....    .++.+..  .-.+||+++| +++.+|+.+|..
T Consensus        76 VIs~GGg~~~~~e----~~~~l~~--~~~Vv~L~~~~e~l~~Rl~~R~~  118 (173)
T PRK00625         76 IVALGGGTLMIEP----SYAHIRN--RGLLVLLSLPIATIYQRLQKRGL  118 (173)
T ss_pred             EEECCCCccCCHH----HHHHHhc--CCEEEEEECCHHHHHHHHhcCCC
Confidence            44333  222222    2333432  3457899987 899999998853

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.61  E-value=8.5e-07  Score=86.21  Aligned_cols=123  Identities=16%  Similarity=0.175  Sum_probs=82.6

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCC-------CcccCCCh----------H-H--HH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPG-------LLRKHNYS----------E-R--FQ  323 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g-------~~~~~~~~----------~-~--~~  323 (403)
                      ..|.+|+++|++||||||+|.+++..++.  ..++++|.+|+.|....       ..+ +.|.          + .  ..
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~--~~vi~~D~~re~~R~~~~~e~~p~L~~-S~Y~a~~~l~~~~~~~~~~l~  166 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLGI--RSVIGTDSIREVMRKIISKELLPTLHE-SSYTAWKSLRRPPPPEPPVIY  166 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCC--CEEEechHHHHHHHHhcchhhccchhh-hhhhhhhcccCCCCCchhhhh
Confidence            35789999999999999999999999864  25799999997765211       100 0111          0 0  01


Q ss_pred             HHHHH---HHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHH-hcCC-cEEE-EEECChHHHHHHHHHhccc
Q 015668          324 CLMGR---ANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLF-VNFR-KIAV-VVFPKPEDLKIRSVKRFKE  393 (403)
Q Consensus       324 ~~~~~---a~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~-~~~~-~~~v-v~l~~pe~~~~R~~~R~~~  393 (403)
                      ....+   .....+.+++.++.+|.++|+...++.+..    ++.+ ..+. .+.+ +++.+.+..++|...|.+.
T Consensus       167 g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~----i~~~~~~~~~~i~~~l~i~~ee~h~~RF~~R~~~  238 (301)
T PRK04220        167 GFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGF----IKEKYLENPNVFMFVLTLSDEEAHKARFYARARV  238 (301)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHH----HHHhhhcCCCEEEEEEEECCHHHHHHHHHHHHhh
Confidence            11122   223367788889999999999999999974    3333 2333 3333 4556668999998888753

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.60  E-value=3e-07  Score=81.79  Aligned_cols=40  Identities=20%  Similarity=0.353  Sum_probs=34.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      .+.+|+|+|+|||||||+|+.+++.+.   +..++.|.++++.
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~---~~~~d~d~~~~~~   42 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLG---YDFIDTDHLIEAR   42 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhC---CCEEEChHHHHHH
Confidence            457899999999999999999999986   6677889887664

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=98.60  E-value=2.8e-07  Score=79.69  Aligned_cols=112  Identities=16%  Similarity=0.186  Sum_probs=77.0

Q ss_pred             EccCCCChhHHHHHHHHhCCCccEEEeccHHH-----HHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 015668          272 VGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-----LEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN  346 (403)
Q Consensus       272 ~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-----r~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~  346 (403)
                      .|..||||||.+..+++.+.   +..|..|++     +++|. .|.+  .+...+|.++... ..    .+....+.+.+
T Consensus         1 MGVsG~GKStvg~~lA~~lg---~~fidGDdlHp~aNi~KM~-~GiP--L~DdDR~pWL~~l-~~----~~~~~~~~~~~   69 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLG---AKFIDGDDLHPPANIEKMS-AGIP--LNDDDRWPWLEAL-GD----AAASLAQKNKH   69 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcC---CceecccccCCHHHHHHHh-CCCC--CCcchhhHHHHHH-HH----HHHHhhcCCCc
Confidence            48999999999999999997   677777763     45554 4542  1233455554322 21    22233467778


Q ss_pred             EEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhccccCcccccc
Q 015668          347 FIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEQIMF  401 (403)
Q Consensus       347 vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~~g~~Vp~~  401 (403)
                      +||--..+.+++|..    ++... .+.+||++-+ +.+++|...|.   ||.-|.+
T Consensus        70 ~vi~CSALKr~YRD~----LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~---gHFM~~~  119 (161)
T COG3265          70 VVIACSALKRSYRDL----LREANPGLRFVYLDGDFDLILERMKARK---GHFMPAS  119 (161)
T ss_pred             eEEecHHHHHHHHHH----HhccCCCeEEEEecCCHHHHHHHHHhcc---cCCCCHH
Confidence            888888888888875    34433 6899999997 89999999987   5555543

>PRK13946 shikimate kinase; Provisional

Probab=98.58  E-value=6.6e-07  Score=81.31  Aligned_cols=112  Identities=13%  Similarity=0.092  Sum_probs=69.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHH-HHHHHHHHHHHHHHHHHHhcCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERF-QCLMGRANAIFDVLLSRASRTP  344 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~-~~~~~~a~~~~~~ll~~al~~g  344 (403)
                      ...|+|+|+|||||||+++.+++.+.   +-.+++|.+++++.  |..-. ..-..+ +...   .....+++..++..+
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~Lg---~~~id~D~~~~~~~--g~~~~-e~~~~~ge~~~---~~~e~~~l~~l~~~~   80 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATMLG---LPFLDADTEIERAA--RMTIA-EIFAAYGEPEF---RDLERRVIARLLKGG   80 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcC---CCeECcCHHHHHHh--CCCHH-HHHHHHCHHHH---HHHHHHHHHHHHhcC
Confidence            46799999999999999999999986   67889998776653  32100 000001 1111   111223444455566


Q ss_pred             CeEEEeC--CCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668          345 RNFIIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       345 ~~vIlD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      ..||...  +.+.+..|+.    +...  -..|+++.| +++++|+.+|..
T Consensus        81 ~~Vi~~ggg~~~~~~~r~~----l~~~--~~~v~L~a~~e~~~~Rl~~r~~  125 (184)
T PRK13946         81 PLVLATGGGAFMNEETRAA----IAEK--GISVWLKADLDVLWERVSRRDT  125 (184)
T ss_pred             CeEEECCCCCcCCHHHHHH----HHcC--CEEEEEECCHHHHHHHhcCCCC
Confidence            5666553  5566665553    2222  245788887 889999998753

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=98.55  E-value=3.8e-07  Score=79.03  Aligned_cols=115  Identities=18%  Similarity=0.181  Sum_probs=76.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHHHHHhhcCCCcccCCCh-HHHHHHHHHHHHHHHHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYS-ERFQCLMGRANAIFDVLLSRAS  341 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~ir~~l~~~g~~~~~~~~-~~~~~~~~~a~~~~~~ll~~al  341 (403)
                      ...+|+|+||+||||||+|-.|.+.+-.+  -..++..|.+|-     |+.++..|. ....+.+.++.+    ......
T Consensus        30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRh-----GLN~DL~F~a~dR~ENIRRige----VaKLFA  100 (207)
T KOG0635|consen   30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRH-----GLNKDLGFKAEDRNENIRRIGE----VAKLFA  100 (207)
T ss_pred             CCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccc-----ccccccCcchhhhhhhHHHHHH----HHHHHh
Confidence            35789999999999999998888776543  346788888774     332222222 222333334333    222234


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHH
Q 015668          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK  389 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~  389 (403)
                      ..+-.-|-.-...++..|.. .+.+-..+.+.-||+++| +.|.+|.-+
T Consensus       101 Dag~iciaSlISPYR~dRda-cRel~~~~~FiEvfmdvpl~vcE~RDPK  148 (207)
T KOG0635|consen  101 DAGVICIASLISPYRKDRDA-CRELLPEGDFIEVFMDVPLEVCEARDPK  148 (207)
T ss_pred             ccceeeeehhcCchhccHHH-HHHhccCCCeEEEEecCcHHHhhccCch
Confidence            67777777778888888876 334433347888899999 899888654

>PRK07261 topology modulation protein; Provisional

Probab=98.55  E-value=1.1e-07  Score=85.46  Aligned_cols=98  Identities=17%  Similarity=0.216  Sum_probs=58.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF  347 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~v  347 (403)
                      -|+++|.|||||||+|+++++.+.   ..+++.|.++-.   .+ ..    ....++...        .+..++.++. +
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~---~~~i~~D~~~~~---~~-~~----~~~~~~~~~--------~~~~~~~~~~-w   61 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYN---CPVLHLDTLHFQ---PN-WQ----ERDDDDMIA--------DISNFLLKHD-W   61 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC---CCeEecCCEEec---cc-cc----cCCHHHHHH--------HHHHHHhCCC-E
Confidence            378999999999999999998765   345555654311   11 00    001111111        2223345555 9


Q ss_pred             EEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          348 IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       348 IlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      |+|.++....... .+   ..  --.+++++.| ..|+.|..+|.
T Consensus        62 Iidg~~~~~~~~~-~l---~~--ad~vI~Ld~p~~~~~~R~lkR~  100 (171)
T PRK07261         62 IIDGNYSWCLYEE-RM---QE--ADQIIFLNFSRFNCLYRAFKRY  100 (171)
T ss_pred             EEcCcchhhhHHH-HH---HH--CCEEEEEcCCHHHHHHHHHHHH
Confidence            9999865422121 12   21  1246899998 89999999985

>PLN02674 adenylate kinase

Probab=98.54  E-value=1e-06  Score=83.54  Aligned_cols=116  Identities=18%  Similarity=0.214  Sum_probs=69.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLSRAS  341 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~~al  341 (403)
                      .-|++.|+|||||||.|+.+++.+.   +.+||++++ |+++. .+.    ..+.....+++.-    ......++..++
T Consensus        32 ~~i~l~G~PGsGKgT~a~~La~~~~---~~his~GdllR~~i~-~~s----~~g~~i~~~~~~G~lvpd~iv~~lv~~~l  103 (244)
T PLN02674         32 KRLILIGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVA-AKT----PLGIKAKEAMDKGELVSDDLVVGIIDEAM  103 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHcC---CcEEchhHHHHHHHh-ccC----hhhHHHHHHHHcCCccCHHHHHHHHHHHH
Confidence            4578899999999999999999987   788988765 55442 221    1122222222110    011222333333


Q ss_pred             c---CCCeEEEeCCCCCHHHHHHHHH-HHhcCC-c-EEEEEECCh-HHHHHHHHHhc
Q 015668          342 R---TPRNFIIDQTNVFKSARKRKLR-LFVNFR-K-IAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       342 ~---~g~~vIlD~Tn~~~~~R~~~~~-~~~~~~-~-~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      .   .+..+|+|.---+.. +...+. .+...+ . -.+++++.| +++++|...|.
T Consensus       104 ~~~~~~~g~ilDGfPRt~~-Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~  159 (244)
T PLN02674        104 KKPSCQKGFILDGFPRTVV-QAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRW  159 (244)
T ss_pred             hCcCcCCcEEEeCCCCCHH-HHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccc
Confidence            2   346799998544444 333344 334333 3 357788998 78999999984

>PRK02496 adk adenylate kinase; Provisional

Probab=98.52  E-value=4.6e-07  Score=82.04  Aligned_cols=117  Identities=17%  Similarity=0.140  Sum_probs=65.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHh-
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRAS-  341 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al-  341 (403)
                      -|++.|+|||||||+|+.+++.++   +.+++.+++ ++.+. .+.    ............    -......++...+ 
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~---~~~i~~~~~~~~~~~-~~~----~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~   74 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLH---IPHISTGDILRQAIK-EQT----PLGIKAQGYMDKGELVPDQLVLDLVQERLQ   74 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CcEEEhHHHHHHHHh-ccC----hhHHHHHHHHHCCCccCHHHHHHHHHHHHh
Confidence            378899999999999999999876   677887655 44432 111    000000001000    0011112222211 


Q ss_pred             --cCCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhcc
Q 015668          342 --RTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       342 --~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                        .....+|||..--+..+...+-+.+...+  ...+++++.| +.+++|...|.+
T Consensus        75 ~~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~  130 (184)
T PRK02496         75 QPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGR  130 (184)
T ss_pred             CcCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCC
Confidence              23457999985444443332222333333  4567888887 789999998854

>PRK06217 hypothetical protein; Validated

Probab=98.51  E-value=1.5e-07  Score=85.31  Aligned_cols=104  Identities=15%  Similarity=0.011  Sum_probs=62.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN  346 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~  346 (403)
                      .-|+++|.|||||||+|++|++.+.   +-+++.|.+..+-  .+..  .......+..   .     .++...+..+..
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~---~~~~~~D~~~~~~--~~~~--~~~~~~~~~~---~-----~~~~~~~~~~~~   66 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLD---IPHLDTDDYFWLP--TDPP--FTTKRPPEER---L-----RLLLEDLRPREG   66 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC---CcEEEcCceeecc--CCCC--ccccCCHHHH---H-----HHHHHHHhcCCC
Confidence            3589999999999999999999986   5678888765321  1100  0000011111   1     122222345678


Q ss_pred             EEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668          347 FIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       347 vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      +|||.. +.. .+.    .+... .-.+|+++.| +++++|..+|..
T Consensus        67 ~vi~G~-~~~-~~~----~~~~~-~d~~i~Ld~~~~~~~~Rl~~R~~  106 (183)
T PRK06217         67 WVLSGS-ALG-WGD----PLEPL-FDLVVFLTIPPELRLERLRLREF  106 (183)
T ss_pred             EEEEcc-HHH-HHH----HHHhh-CCEEEEEECCHHHHHHHHHcCcc
Confidence            999954 322 222    12221 2246789998 899999999974

>PRK13948 shikimate kinase; Provisional

Probab=98.50  E-value=5.2e-07  Score=82.01  Aligned_cols=111  Identities=15%  Similarity=0.174  Sum_probs=65.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP  344 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g  344 (403)
                      .+..|+|+|+|||||||+++.+++.+.   +..+++|.+++++.  |..-..-+...-+....+.   -.+++..++..+
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~lg---~~~iD~D~~ie~~~--g~si~~if~~~Ge~~fR~~---E~~~l~~l~~~~   80 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRALM---LHFIDTDRYIERVT--GKSIPEIFRHLGEAYFRRC---EAEVVRRLTRLD   80 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcC---CCEEECCHHHHHHH--hCCHHHHHHHhCHHHHHHH---HHHHHHHHHhcC
Confidence            468899999999999999999999986   66788998877753  3210000000001112111   112333333444


Q ss_pred             CeEEEe---CCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 015668          345 RNFIID---QTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR  390 (403)
Q Consensus       345 ~~vIlD---~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R  390 (403)
                       ..||.   .+...+..|+.    +++.  -.+||+..+ +.+.+|+..+
T Consensus        81 -~~VIa~GgG~v~~~~n~~~----l~~~--g~vV~L~~~~e~l~~Rl~~~  123 (182)
T PRK13948         81 -YAVISLGGGTFMHEENRRK----LLSR--GPVVVLWASPETIYERTRPG  123 (182)
T ss_pred             -CeEEECCCcEEcCHHHHHH----HHcC--CeEEEEECCHHHHHHHhcCC
Confidence             44554   45566665553    3332  346688886 8899998543

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=98.49  E-value=1.4e-06  Score=78.88  Aligned_cols=113  Identities=24%  Similarity=0.304  Sum_probs=64.1

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH-HHhhcCCCcccCCChHHHHHHHHH--------HHHHHHHHHHH
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-EQMKVPGLLRKHNYSERFQCLMGR--------ANAIFDVLLSR  339 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir-~~l~~~g~~~~~~~~~~~~~~~~~--------a~~~~~~ll~~  339 (403)
                      |++.|+|||||||+|++|++.++   ..+|+++.+. .... .+.    .........+++        ...+....+..
T Consensus         3 iiilG~pGaGK~T~A~~La~~~~---i~hlstgd~~r~~~~-~~t----~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~   74 (178)
T COG0563           3 ILILGPPGAGKSTLAKKLAKKLG---LPHLDTGDILRAAIA-ERT----ELGEEIKKYIDKGELVPDEIVNGLVKERLDE   74 (178)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CcEEcHhHHhHhhhc-cCC----hHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence            78899999999999999999987   8999987754 3321 110    111111111111        11222233333


Q ss_pred             HhcCCCeEEEeCCCCCHHHHHHHHHH-HhcCC-c-EEEEEECCh-HHHHHHHHHhc
Q 015668          340 ASRTPRNFIIDQTNVFKSARKRKLRL-FVNFR-K-IAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       340 al~~g~~vIlD~Tn~~~~~R~~~~~~-~~~~~-~-~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      +-... .||+|.---+.. +.+.++. +.+++ + -.++.++.+ +.++.|...|.
T Consensus        75 ~d~~~-~~I~dg~PR~~~-qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~  128 (178)
T COG0563          75 ADCKA-GFILDGFPRTLC-QARALKRLLKELGVRLDMVIELDVPEELLLERLLGRR  128 (178)
T ss_pred             hcccC-eEEEeCCCCcHH-HHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCcc
Confidence            31122 799998433333 3333333 34443 3 345677777 78889888884

>PRK03839 putative kinase; Provisional

Probab=98.49  E-value=4.5e-07  Score=81.82  Aligned_cols=99  Identities=15%  Similarity=0.191  Sum_probs=59.1

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF  347 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~v  347 (403)
                      .|+++|+|||||||+++.+++.+.   +.+++.|.+..+... +..    +....+...+.+    ...+... ..+.++
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~---~~~id~d~~~~~~~~-~~~----~~~~~~~~~~~l----~~~~~~~-~~~~~v   68 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLG---YEYVDLTEFALKKGI-GEE----KDDEMEIDFDKL----AYFIEEE-FKEKNV   68 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CcEEehhhhhhhcCC-ccc----CChhhhcCHHHH----HHHHHHh-ccCCCE
Confidence            588999999999999999999986   677888876554321 111    111111111111    1111111 235679


Q ss_pred             EEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          348 IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       348 IlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      |+|..+.      .    +.  ..-.+++++++ +++.+|..+|.
T Consensus        69 IidG~~~------~----l~--~~~~vi~L~~~~~~~~~Rl~~R~  101 (180)
T PRK03839         69 VLDGHLS------H----LL--PVDYVIVLRAHPKIIKERLKERG  101 (180)
T ss_pred             EEEeccc------c----cc--CCCEEEEEECCHHHHHHHHHHcC
Confidence            9997421      1    11  22235788886 89999998875

>PRK13947 shikimate kinase; Provisional

Probab=98.48  E-value=7.1e-07  Score=79.59  Aligned_cols=109  Identities=16%  Similarity=0.231  Sum_probs=60.6

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF  347 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~v  347 (403)
                      -|+++|+|||||||+|+.+++.+.   +..++.|.+++++.  |.....-+...-+......   ..++++.+...+ ++
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg---~~~id~d~~~~~~~--g~~~~~~~~~~ge~~~~~~---e~~~~~~l~~~~-~~   73 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLS---FGFIDTDKEIEKMT--GMTVAEIFEKDGEVRFRSE---EKLLVKKLARLK-NL   73 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhC---CCEEECchhhhhhc--CCcHHHHHHHhChHHHHHH---HHHHHHHHhhcC-Ce
Confidence            388999999999999999999987   67788898776652  3210000000001111111   112333333333 44


Q ss_pred             EEeCCC---CCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          348 IIDQTN---VFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       348 IlD~Tn---~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      |+....   +...    .++.+.+.+  .+||+..+ +.+.+|...|.
T Consensus        74 vi~~g~g~vl~~~----~~~~l~~~~--~vv~L~~~~~~l~~Rl~~r~  115 (171)
T PRK13947         74 VIATGGGVVLNPE----NVVQLRKNG--VVICLKARPEVILRRVGKKK  115 (171)
T ss_pred             EEECCCCCcCCHH----HHHHHHhCC--EEEEEECCHHHHHHHhcCCC
Confidence            443221   2222    233444432  36788887 78999998764

>PRK14529 adenylate kinase; Provisional

Probab=98.46  E-value=1.2e-06  Score=82.00  Aligned_cols=115  Identities=16%  Similarity=0.146  Sum_probs=67.6

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccH-HHHHHhhcCCCcccCCChHHHHHHHHHHH----HHHHHHHHHHhc-
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN-LILEQMKVPGLLRKHNYSERFQCLMGRAN----AIFDVLLSRASR-  342 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D-~ir~~l~~~g~~~~~~~~~~~~~~~~~a~----~~~~~ll~~al~-  342 (403)
                      |+|+|+|||||||+++.|++.+.   +.++|+. .+|+++. .+.    ........+++.-.    +....++...+. 
T Consensus         3 I~l~G~PGsGK~T~a~~La~~~~---~~~is~gdllr~~i~-~~t----~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~   74 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKKKYD---LAHIESGAIFREHIG-GGT----ELGKKAKEYIDRGDLVPDDITIPMILETLKQ   74 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC---CCCcccchhhhhhcc-CCC----hHHHHHHHHHhccCcchHHHHHHHHHHHHhc
Confidence            78899999999999999999986   5667654 4455432 111    11111222221110    112223322222 


Q ss_pred             -CCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668          343 -TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       343 -~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                       ..+.+|||.---+..+-+.+...+...+  .-.+++++.| +++++|...|.
T Consensus        75 ~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~  127 (223)
T PRK14529         75 DGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRR  127 (223)
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCc
Confidence             2567999985555544333333444443  3457899998 78999999984

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=98.46  E-value=2.3e-06  Score=76.45  Aligned_cols=105  Identities=19%  Similarity=0.209  Sum_probs=64.6

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHH-HHHHHHHHHHHHHHHhcCCCe
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCL-MGRANAIFDVLLSRASRTPRN  346 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~-~~~a~~~~~~ll~~al~~g~~  346 (403)
                      =|+|||+|||||||+.+.|++.+.   +-.+++|.+.++-.  |.    +-..-++.. .+.-++.-.+++..++..+ +
T Consensus         4 ~IvLiG~mGaGKSTIGr~LAk~L~---~~F~D~D~~Ie~~~--g~----sI~eIF~~~GE~~FR~~E~~vl~~l~~~~-~   73 (172)
T COG0703           4 NIVLIGFMGAGKSTIGRALAKALN---LPFIDTDQEIEKRT--GM----SIAEIFEEEGEEGFRRLETEVLKELLEED-N   73 (172)
T ss_pred             cEEEEcCCCCCHhHHHHHHHHHcC---CCcccchHHHHHHH--Cc----CHHHHHHHHhHHHHHHHHHHHHHHHhhcC-C
Confidence            478999999999999999999997   67788998877632  31    101111111 0011111123444444555 4


Q ss_pred             EEEeC---CCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 015668          347 FIIDQ---TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV  388 (403)
Q Consensus       347 vIlD~---Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~  388 (403)
                      .||..   +-.+++.|+.    +++.  -.+||++.| +.+++|..
T Consensus        74 ~ViaTGGG~v~~~enr~~----l~~~--g~vv~L~~~~e~l~~Rl~  113 (172)
T COG0703          74 AVIATGGGAVLSEENRNL----LKKR--GIVVYLDAPFETLYERLQ  113 (172)
T ss_pred             eEEECCCccccCHHHHHH----HHhC--CeEEEEeCCHHHHHHHhc
Confidence            55554   4445555542    4433  367899998 89999998

>PTZ00088 adenylate kinase 1; Provisional

Probab=98.45  E-value=1.5e-06  Score=81.92  Aligned_cols=112  Identities=21%  Similarity=0.195  Sum_probs=65.5

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH-HHhhcCCCcccCCChHHHHHHHH--------HHHHHHHHHHHH
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-EQMKVPGLLRKHNYSERFQCLMG--------RANAIFDVLLSR  339 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir-~~l~~~g~~~~~~~~~~~~~~~~--------~a~~~~~~ll~~  339 (403)
                      |+++|+|||||||+|+.+++.+.   +.+|++|++. +++...+.     .+.....+++        ...+++...+..
T Consensus         9 Ivl~G~PGsGK~T~a~~La~~~g---~~~is~gdllr~~~~~~t~-----lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~   80 (229)
T PTZ00088          9 IVLFGAPGVGKGTFAEILSKKEN---LKHINMGNILREEIKAKTT-----IGKEIQKVVTSGNLVPDNLVIAIVKDEIAK   80 (229)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CcEEECChHHHHHhhcCCh-----HHHHHHHHHHcCCcCCHHHHHHHHHHHHHh
Confidence            88899999999999999999986   7888888764 44321111     0111111111        011112222222


Q ss_pred             H-hcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          340 A-SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       340 a-l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      . ....+.+|||.---+..++. .+..+  .....+++++.| +.+++|...|.
T Consensus        81 ~~~~~~~g~iLDGfPRt~~Qa~-~l~~~--~~~~~vi~l~~~~~~~~~Rl~~Rr  131 (229)
T PTZ00088         81 VTDDCFKGFILDGFPRNLKQCK-ELGKI--TNIDLFVNIYLPRNILIKKLLGRR  131 (229)
T ss_pred             hccccCceEEEecCCCCHHHHH-HHHhc--CCCCEEEEEeCCHHHHHHHHHcCc
Confidence            1 23457899998444444333 23222  124567788998 78999999884

>PRK14528 adenylate kinase; Provisional

Probab=98.43  E-value=3.5e-06  Score=76.75  Aligned_cols=118  Identities=18%  Similarity=0.128  Sum_probs=65.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHH--------HHHHHHHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMG--------RANAIFDVLL  337 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~--------~a~~~~~~ll  337 (403)
                      ..|++.|+|||||||+|+.+++.+.   +.+++.+++ |+.+. .+.    ..+......++        .+...+.+.+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~---~~~is~~~~lr~~~~-~~~----~~g~~~~~~~~~g~lvp~~~~~~~~~~~l   73 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLS---IPQISTGDILREAVK-NQT----AMGIEAKRYMDAGDLVPDSVVIGIIKDRI   73 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC---CCeeeCCHHHHHHhh-cCC----HHHHHHHHHHhCCCccCHHHHHHHHHHHH
Confidence            4588999999999999999998876   567777765 55442 121    00110011110        0111111222


Q ss_pred             HHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhccc
Q 015668          338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRFKE  393 (403)
Q Consensus       338 ~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~~~  393 (403)
                      ... .....+|||.---+.++-..+.+.+...+  .-.++++++| +++.+|...|...
T Consensus        74 ~~~-~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~  131 (186)
T PRK14528         74 REA-DCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEI  131 (186)
T ss_pred             hCc-CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccc
Confidence            111 22456999973233332222223333333  3457789998 8999999998643

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=98.43  E-value=4.9e-06  Score=75.36  Aligned_cols=122  Identities=15%  Similarity=0.078  Sum_probs=64.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCcc--EEEecc-------HHHHHHhhcCCCcccCCChHHHHHHHHHHH--HHHHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKR--YILLGT-------NLILEQMKVPGLLRKHNYSERFQCLMGRAN--AIFDVL  336 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~--~v~ls~-------D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~--~~~~~l  336 (403)
                      +|++.|++||||||+++.|++.+...+  ++.+..       +.+++-+. ....  .........+.-.+.  ..+...
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~r~~~~~~~   78 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLL-DPED--EKMDPRAELLLFAADRAQHVEEV   78 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHh-ccCc--cCCCHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999998874322  222311       23343322 1100  001111111111111  112233


Q ss_pred             HHHHhcCCCeEEEeCCCCCHHH----H----HHHHHH---Hh-cC-CcEEEEEECCh-HHHHHHHHHhcc
Q 015668          337 LSRASRTPRNFIIDQTNVFKSA----R----KRKLRL---FV-NF-RKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       337 l~~al~~g~~vIlD~Tn~~~~~----R----~~~~~~---~~-~~-~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      +..++..+..||+|-...+.-.    .    ..++..   +. .. .+..+++++++ +++++|..+|..
T Consensus        79 ~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~  148 (200)
T cd01672          79 IKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGR  148 (200)
T ss_pred             HHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence            4445678999999932211110    0    112222   22 21 24567888887 899999999875

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK08118 topology modulation protein; Reviewed

Probab=98.42  E-value=1.4e-06  Score=78.15  Aligned_cols=98  Identities=15%  Similarity=0.182  Sum_probs=58.9

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF  347 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~v  347 (403)
                      -|+++|+|||||||+|+++++.+.   ..+++.|.+...   .|-  ..  ..+ ++    ..    +++..++. +..+
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~---~~~~~lD~l~~~---~~w--~~--~~~-~~----~~----~~~~~~~~-~~~w   62 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLN---IPVHHLDALFWK---PNW--EG--VPK-EE----QI----TVQNELVK-EDEW   62 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CCceecchhhcc---cCC--cC--CCH-HH----HH----HHHHHHhc-CCCE
Confidence            488999999999999999999886   455666865432   110  00  011 11    11    12222223 4579


Q ss_pred             EEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668          348 IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       348 IlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      |+|.... .....+    +..  .-.+++++.| +.|..|..+|..
T Consensus        63 VidG~~~-~~~~~~----l~~--~d~vi~Ld~p~~~~~~R~~~R~~  101 (167)
T PRK08118         63 IIDGNYG-GTMDIR----LNA--ADTIIFLDIPRTICLYRAFKRRV  101 (167)
T ss_pred             EEeCCcc-hHHHHH----HHh--CCEEEEEeCCHHHHHHHHHHHHH
Confidence            9998533 221111    111  2356899998 889999999853

>PRK06547 hypothetical protein; Provisional

Probab=98.42  E-value=7.8e-07  Score=80.12  Aligned_cols=114  Identities=18%  Similarity=0.131  Sum_probs=66.5

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHH---------
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFD---------  334 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~---------  334 (403)
                      ..+.+|+++|++||||||+|+.+++.++   ..+++.|.+....  .+.      ....+.+.+......+         
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~---~~~~~~d~~~~~~--~~~------~~~~~~l~~~~l~~g~~~~~~yd~~   81 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAARTG---FQLVHLDDLYPGW--HGL------AAASEHVAEAVLDEGRPGRWRWDWA   81 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC---CCeecccceeccc--ccC------ChHHHHHHHHHHhCCCCceecCCCC
Confidence            4578999999999999999999999875   5677777644211  010      0000111111100000         


Q ss_pred             -H-HHH-HHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          335 -V-LLS-RASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       335 -~-ll~-~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                       . ... ..+..+.++|++........   ..+.+.+.+.+.+|++++| +++++|..+|.
T Consensus        82 ~~~~~~~~~l~~~~vVIvEG~~al~~~---~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd  139 (172)
T PRK06547         82 NNRPGDWVSVEPGRRLIIEGVGSLTAA---NVALASLLGEVLTVWLDGPEALRKERALARD  139 (172)
T ss_pred             CCCCCCcEEeCCCCeEEEEehhhccHH---HHHHhccCCCEEEEEEECCHHHHHHHHHhcC
Confidence             0 000 01224567889997665332   2222333336678999998 89999999996

>PRK13949 shikimate kinase; Provisional

Probab=98.42  E-value=2.6e-06  Score=76.49  Aligned_cols=36  Identities=19%  Similarity=0.417  Sum_probs=31.3

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~  306 (403)
                      -|+++|+|||||||+++.+++.+.   +..+++|.+.++
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~---~~~id~D~~i~~   38 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELG---LSFIDLDFFIEN   38 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC---CCeecccHHHHH
Confidence            488999999999999999999986   678888977654

>PRK04040 adenylate kinase; Provisional

Probab=98.42  E-value=1.4e-06  Score=79.68  Aligned_cols=40  Identities=25%  Similarity=0.414  Sum_probs=31.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~  306 (403)
                      +.+|+++|.|||||||+++.+++.++. .+.+++.++++.+
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~-~~~~~~~g~~~~~   41 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKE-DYKIVNFGDVMLE   41 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhcc-CCeEEecchHHHH
Confidence            578999999999999999999999851 1566777766433

>PRK13808 adenylate kinase; Provisional

Probab=98.39  E-value=3.7e-06  Score=83.05  Aligned_cols=113  Identities=20%  Similarity=0.240  Sum_probs=64.2

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHH--------HHHHHHHHHHHH
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMG--------RANAIFDVLLSR  339 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~--------~a~~~~~~ll~~  339 (403)
                      |+|.|+|||||||+++.|++.+.   +.+|+.+++ |+++. .+.    ..+.....++.        ....++...+..
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~yg---l~~is~gdlLR~~i~-~~s----~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~   74 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQYG---IVQLSTGDMLRAAVA-AGT----PVGLKAKDIMASGGLVPDEVVVGIISDRIEQ   74 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CceecccHHHHHHhh-cCC----hhhHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence            67899999999999999999986   788887665 44432 121    00111111110        111111122211


Q ss_pred             HhcCCCeEEEeCCCCCHHHHHHHHH-HHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668          340 ASRTPRNFIIDQTNVFKSARKRKLR-LFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       340 al~~g~~vIlD~Tn~~~~~R~~~~~-~~~~~~--~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                       ......+|||.---+.+ +...+. .+...+  .-.+|+|+.| +++++|...|.
T Consensus        75 -~~~~~G~ILDGFPRt~~-QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~  128 (333)
T PRK13808         75 -PDAANGFILDGFPRTVP-QAEALDALLKDKQLKLDAVVELRVNEGALLARVETRV  128 (333)
T ss_pred             -ccccCCEEEeCCCCCHH-HHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCc
Confidence             12245799997333333 333343 333333  4457789987 79999999884

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=98.39  E-value=4.1e-06  Score=73.36  Aligned_cols=111  Identities=20%  Similarity=0.226  Sum_probs=60.7

Q ss_pred             EEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHh---c
Q 015668          271 MVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRAS---R  342 (403)
Q Consensus       271 l~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al---~  342 (403)
                      +.|+|||||||+|+++++.+.   +++|+..++ |+++. .+.    ..+......++.    -..+.-.++...+   .
T Consensus         1 i~G~PgsGK~t~~~~la~~~~---~~~is~~~llr~~~~-~~s----~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~   72 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYG---LVHISVGDLLREEIK-SDS----ELGKQIQEYLDNGELVPDELVIELLKERLEQPP   72 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHT---SEEEEHHHHHHHHHH-TTS----HHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGG
T ss_pred             CcCCCCCChHHHHHHHHHhcC---cceechHHHHHHHHh-hhh----HHHHHHHHHHHhhccchHHHHHHHHHHHHhhhc
Confidence            589999999999999999986   788988665 44442 111    001111111110    0122223332222   3


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHH
Q 015668          343 TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVK  389 (403)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~  389 (403)
                      ..+.+|||.---+...-+.+.+.+....  .-.+++++++ +.+.+|...
T Consensus        73 ~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~  122 (151)
T PF00406_consen   73 CNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ  122 (151)
T ss_dssp             TTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred             ccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence            4689999984344333232222222233  4467888998 788888765

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=98.37  E-value=1.1e-05  Score=72.44  Aligned_cols=122  Identities=21%  Similarity=0.218  Sum_probs=73.8

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLS  338 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~  338 (403)
                      ..+.+|++.|.|||||-|.-.++++.++   |.+||..++ |++....|.    .++.....++..-    .+....+++
T Consensus         6 ~~~~IifVlGGPGsgKgTqC~kiv~ky~---ftHlSaGdLLR~E~~~~gs----e~g~~I~~~i~~G~iVP~ei~~~LL~   78 (195)
T KOG3079|consen    6 DKPPIIFVLGGPGSGKGTQCEKIVEKYG---FTHLSAGDLLRAEIASAGS----ERGALIKEIIKNGDLVPVEITLSLLE   78 (195)
T ss_pred             cCCCEEEEEcCCCCCcchHHHHHHHHcC---ceeecHHHHHHHHHccccC----hHHHHHHHHHHcCCcCcHHHHHHHHH
Confidence            4578999999999999999999999987   999999765 555431121    1222222222110    123344554


Q ss_pred             HHhcC--C-CeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhccc
Q 015668          339 RASRT--P-RNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKE  393 (403)
Q Consensus       339 ~al~~--g-~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~~  393 (403)
                      .++.+  + ..++||.=--..+....|=+.+.+ ..-.+++|+++ ++|++|...|.+.
T Consensus        79 ~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~-~~~fvl~fdc~ee~~l~Rll~R~q~  136 (195)
T KOG3079|consen   79 EAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQG-DPDFVLFFDCPEETMLKRLLHRGQS  136 (195)
T ss_pred             HHHHhcCCCCeEEecCCCCChHHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHhhccc
Confidence            44332  2 229999743333333222111211 13445699998 8999999999875

>PRK04182 cytidylate kinase; Provisional

Probab=98.36  E-value=7.4e-07  Score=79.76  Aligned_cols=107  Identities=17%  Similarity=0.168  Sum_probs=60.6

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh-cCCCcccCCChHHHHHHHH---HHHHHHHHHHHHHhcC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK-VPGLLRKHNYSERFQCLMG---RANAIFDVLLSRASRT  343 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~-~~g~~~~~~~~~~~~~~~~---~a~~~~~~ll~~al~~  343 (403)
                      +|+++|.|||||||+|+.+++.+.   +.+++.|++...+. ..|...     ..+....+   .....+...+......
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg---~~~id~~~~~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLG---LKHVSAGEIFRELAKERGMSL-----EEFNKYAEEDPEIDKEIDRRQLEIAEK   73 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC---CcEecHHHHHHHHHHHcCCCH-----HHHHHHhhcCchHHHHHHHHHHHHHhc
Confidence            689999999999999999999886   67888665443332 123210     01100000   0111122222222224


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          344 PRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      +.++|+|.....      ++  +... ...+|++.+| +++.+|..+|.
T Consensus        74 ~~~~Vi~g~~~~------~~--~~~~-~~~~V~l~a~~e~~~~Rl~~r~  113 (180)
T PRK04182         74 EDNVVLEGRLAG------WM--AKDY-ADLKIWLKAPLEVRAERIAERE  113 (180)
T ss_pred             CCCEEEEEeecc------eE--ecCC-CCEEEEEECCHHHHHHHHHhcc
Confidence            567888864321      11  1111 3455788887 78999998885

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.36  E-value=2.2e-06  Score=77.92  Aligned_cols=115  Identities=14%  Similarity=0.183  Sum_probs=61.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccC-CC-hHHHHHHHHH---HHHH---------
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKH-NY-SERFQCLMGR---ANAI---------  332 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~-~~-~~~~~~~~~~---a~~~---------  332 (403)
                      ++++++|++||||||+++.++.....  .+.++...+ ......+. .+. .+ ...+...++.   +..+         
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~--~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~   78 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQT--QLLVAHRYI-TRPASAGS-ENHIALSEQEFFTRAGQNLFALSWHANGLYYGV   78 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCC--eEEEcCEEC-CCccchhH-HhheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence            57899999999999999999887642  222221111 00000000 000 00 1111111110   0000         


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          333 FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      .+ -++.++..|.+||+|.+   +..+...   .+.+. ...+|+++++ +++.+|+.+|.+
T Consensus        79 ~~-~~~~~l~~g~~VI~~G~---~~~~~~~---~~~~~~~~~vi~l~~s~e~l~~RL~~R~~  133 (186)
T PRK10078         79 GI-EIDLWLHAGFDVLVNGS---RAHLPQA---RARYQSALLPVCLQVSPEILRQRLENRGR  133 (186)
T ss_pred             cH-HHHHHHhCCCEEEEeCh---HHHHHHH---HHHcCCCEEEEEEeCCHHHHHHHHHHhCC
Confidence            01 24556788999999876   2222222   22233 6777889887 899999998854

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.35  E-value=4.2e-06  Score=75.31  Aligned_cols=110  Identities=12%  Similarity=0.131  Sum_probs=62.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHHHhcCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASRTP  344 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~al~~g  344 (403)
                      ...|+++|++||||||+++.++..+.   +..+++|..+++..  |..-...+.. ......++..    +++..+.. .
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~---~~~vd~D~~i~~~~--g~~i~~~~~~~g~~~fr~~e~----~~l~~l~~-~   73 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQEIEKRT--GADIGWVFDVEGEEGFRDREE----KVINELTE-K   73 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcC---CcEEECCchHHHHh--CcCHhHHHHHhCHHHHHHHHH----HHHHHHHh-C
Confidence            45699999999999999999999876   66788887666543  3100000000 0011111111    23323223 3


Q ss_pred             CeEEEeCC---CCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          345 RNFIIDQT---NVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       345 ~~vIlD~T---n~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      ..+|+...   -..+..|.    .+...  -.+||++.| +++++|+..+.
T Consensus        74 ~~~vi~~ggg~v~~~~~~~----~l~~~--~~vv~L~~~~e~~~~Ri~~~~  118 (172)
T PRK05057         74 QGIVLATGGGSVKSRETRN----RLSAR--GVVVYLETTIEKQLARTQRDK  118 (172)
T ss_pred             CCEEEEcCCchhCCHHHHH----HHHhC--CEEEEEeCCHHHHHHHHhCCC
Confidence            34555542   23344343    23333  257899997 89999997653

>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]

Probab=98.34  E-value=9.3e-07  Score=86.97  Aligned_cols=99  Identities=25%  Similarity=0.281  Sum_probs=75.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~  345 (403)
                      .++|+|+|.|||||||++.++...+.   +++++.|.       -|.         |+.+...+        ..++..++
T Consensus       269 ~eiV~~vgfp~sGks~f~a~~~~~~~---y~~vn~d~-------lg~---------~~~C~~~~--------~e~l~~~~  321 (422)
T KOG2134|consen  269 GEIVVAVGFPGSGKSTFAAKRVVPNG---YKIVNADT-------LGT---------PQNCLLAN--------AEALKHGK  321 (422)
T ss_pred             CcEEEEEecCCCCcchhhhhhcccCc---eeEeeccc-------CCC---------chhhHHHH--------HHHhhccc
Confidence            49999999999999999999988775   88888874       232         23343322        23568999


Q ss_pred             eEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668          346 NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       346 ~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      +||+|+||+....|+.+++...... .+..+.+.+. +..+..+..|.
T Consensus       322 sVvidnt~pd~~sr~~~~~~a~e~~~p~rcf~~~~s~eq~~hn~~fR~  369 (422)
T KOG2134|consen  322 SVVIDNTNPDAESRKYYLDCATEREIPIRCFEMNSSVEQAQHNNRFRE  369 (422)
T ss_pred             EEeeCCCCcchHHHHHHhhhHHHhCccceeeeeccHHHhhhccccchh
Confidence            9999999999999999988887765 6666666666 66666666665

>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]

Probab=98.34  E-value=9.1e-07  Score=79.68  Aligned_cols=123  Identities=16%  Similarity=0.292  Sum_probs=74.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCC---ccEEEeccHHHHHHhhcCCCcccCCChH---HHHHHHHHHHHHHH------
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPE---KRYILLGTNLILEQMKVPGLLRKHNYSE---RFQCLMGRANAIFD------  334 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~---~~~v~ls~D~ir~~l~~~g~~~~~~~~~---~~~~~~~~a~~~~~------  334 (403)
                      .++.++|+|+||||||-+++...+.+   .+.++++-|+++..-.-+.+   ..+..   +++..++.+-....      
T Consensus         2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTpSaD---~a~keqRgr~~~~iEk~ISaiqedtdwp   78 (291)
T KOG4622|consen    2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATPSAD---KAAKEQRGRFECHIEKCISAIQEDTDWP   78 (291)
T ss_pred             ceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCcchh---hhHHHHhchHHHHHHHHHHHHhcccCCC
Confidence            47889999999999999988765542   22456777877643211111   11111   12222222110000      


Q ss_pred             HHHHHHh-----cC-CCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          335 VLLSRAS-----RT-PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       335 ~ll~~al-----~~-g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      -.+.+..     .. ...++.|..+.++++|.++.+.+++.+ -+-++|+.+- .+++++|..|..
T Consensus        79 pqvrrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS~Rsd  144 (291)
T KOG4622|consen   79 PQVRRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANSHRSD  144 (291)
T ss_pred             chheeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhcccccc
Confidence            0000110     12 346778999999999998777777666 6778899886 999999999973

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.34  E-value=2.6e-06  Score=76.63  Aligned_cols=118  Identities=11%  Similarity=0.059  Sum_probs=60.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCcc-EEEeccHHHHHHhhcCCCcccCCChHHHHHHHHH--HH---H------HHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKR-YILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR--AN---A------IFD  334 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~-~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~--a~---~------~~~  334 (403)
                      ++++++|+|||||||+++.++..++... ..++.++.-|... ..|..-.......+......  ..   +      -..
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPAS-AGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP   80 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCC-CCCccccccCHHHHHHHHHCCCEEEEEeecCccccCh
Confidence            5789999999999999999988765321 2221111111100 00100000000111110000  00   0      000


Q ss_pred             HHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhc-CCcEEEEEECCh-HHHHHHHHHhcc
Q 015668          335 VLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       335 ~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      ..+..++.++.+||+|..   +..+.    .+.+ +....+++++++ +++.+|+..|.+
T Consensus        81 ~~i~~~~~~g~~vv~~g~---~~~~~----~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~  133 (179)
T TIGR02322        81 AEIDQWLEAGDVVVVNGS---RAVLP----EARQRYPNLLVVNITASPDVLAQRLAARGR  133 (179)
T ss_pred             HHHHHHHhcCCEEEEECC---HHHHH----HHHHHCCCcEEEEEECCHHHHHHHHHHcCC
Confidence            122334578899999986   22222    2222 225677888887 899999999864

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.33  E-value=2.5e-06  Score=75.74  Aligned_cols=110  Identities=17%  Similarity=0.202  Sum_probs=62.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh-cCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK-VPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN  346 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~-~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~  346 (403)
                      +|+++|.|||||||+|+.+++.+.   +.+++.|.+..++. ..|.... .+ ..+..........+...+......+.+
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg---~~~~~~~~~~~~~~~~~g~~~~-~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~   76 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLS---LKLISAGDIFRELAAKMGLDLI-EF-LNYAEENPEIDKKIDRRIHEIALKEKN   76 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC---CceecHHHHHHHHHHHcCCCHH-HH-HHHHhcCcHHHHHHHHHHHHHHhcCCC
Confidence            689999999999999999999886   67888876554442 1221100 00 000000001111222223233335568


Q ss_pred             EEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          347 FIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       347 vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      +|+|.....      ++  +..... .+|++.+| +.+.+|..+|.
T Consensus        77 ~Vi~g~~~~------~~--~~~~~d-~~v~v~a~~~~r~~R~~~R~  113 (171)
T TIGR02173        77 VVLESRLAG------WI--VREYAD-VKIWLKAPLEVRARRIAKRE  113 (171)
T ss_pred             EEEEecccc------ee--ecCCcC-EEEEEECCHHHHHHHHHHcc
Confidence            889975431      11  122113 45688887 78999999886

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PLN02459 probable adenylate kinase

Probab=98.31  E-value=4.4e-06  Score=79.77  Aligned_cols=113  Identities=20%  Similarity=0.178  Sum_probs=65.3

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH-HHHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHHHHHh-
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLSRAS-  341 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~-ir~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~~al-  341 (403)
                      .|+++|+|||||||.|+.+++.+.   +.+|++.+ +|+++.. +.    ..+.....++++-    ......++...+ 
T Consensus        31 ~ii~~G~PGsGK~T~a~~la~~~~---~~~is~gdllR~ei~~-~t----~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~  102 (261)
T PLN02459         31 NWVFLGCPGVGKGTYASRLSKLLG---VPHIATGDLVREEIKS-SG----PLGAQLKEIVNQGKLVPDEIIFSLLSKRLE  102 (261)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CcEEeCcHHHHHHHhc-cc----hhHHHHHHHHHcCCccCHHHHHHHHHHHHh
Confidence            366689999999999999999886   78888755 5665531 11    1111111121110    011222222222 


Q ss_pred             ----cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          342 ----RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       342 ----~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                          ...+.+|||.---+. .+...+..+.  ..-.+++|+.| +++++|...|.
T Consensus       103 ~~~~~~~~g~iLDGFPRt~-~Qa~~Le~~~--~id~Vi~L~v~d~~l~~Rl~gR~  154 (261)
T PLN02459        103 AGEEEGESGFILDGFPRTV-RQAEILEGVT--DIDLVVNLKLREEVLVEKCLGRR  154 (261)
T ss_pred             cccccCCceEEEeCCCCCH-HHHHHHHhcC--CCCEEEEEECCHHHHHHHhhccc
Confidence                235689999843333 3333333221  23457788998 78999999884

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=98.31  E-value=1.7e-05  Score=72.20  Aligned_cols=123  Identities=17%  Similarity=0.064  Sum_probs=66.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCcc--EEEec----c---HHHHHHhhcCCCcccCCChHHHH-HH--HHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLG----T---NLILEQMKVPGLLRKHNYSERFQ-CL--MGRANAIF  333 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~--~v~ls----~---D~ir~~l~~~g~~~~~~~~~~~~-~~--~~~a~~~~  333 (403)
                      ..+|++.|+|||||||+++.|++.+...+  ++++.    +   +.+++-+. .+.  .....+... .+  ..++ ..+
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~-~~~--~~~~~~~~~~~l~~~~r~-~~~   78 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLL-NEN--DEPLTDKAEALLFAADRH-EHL   78 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHc-CCC--ccCCCHHHHHHHHHHHHH-HHH
Confidence            36899999999999999999998876432  22221    1   22333321 111  011111111 11  1111 123


Q ss_pred             HHHHHHHhcCCCeEEEeCCCCCHHH--------HHHHHHHHhc-C---CcEEEEEECCh-HHHHHHHHHhcc
Q 015668          334 DVLLSRASRTPRNFIIDQTNVFKSA--------RKRKLRLFVN-F---RKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       334 ~~ll~~al~~g~~vIlD~Tn~~~~~--------R~~~~~~~~~-~---~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      ...+..++.++..||+|-...+.-.        -..|+..+.. .   .+-.+++++++ +++++|...|..
T Consensus        79 ~~~i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~  150 (195)
T TIGR00041        79 EDKIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGE  150 (195)
T ss_pred             HHHHHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence            3445566678899999953211100        0123333322 1   13456788887 899999988854

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.28  E-value=2.7e-06  Score=73.38  Aligned_cols=105  Identities=14%  Similarity=0.114  Sum_probs=57.8

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF  347 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~v  347 (403)
                      +|+++|+|||||||+|++|++.+.   +.+++.|.+..+..  +.      ...+..........+.+.+... ..+.++
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~---~~~~~~~~i~~e~~--~~------~~~~~~~~~~i~~~l~~~~~~~-~~~~~~   68 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLG---LPYLDTGGIRTEEV--GK------LASEVAAIPEVRKALDERQREL-AKKPGI   68 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC---CceeccccCCHHHH--HH------HHHHhcccHhHHHHHHHHHHHH-hhCCCE
Confidence            588999999999999999999876   55677673322110  00      0000000011112222233222 345579


Q ss_pred             EEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhccc
Q 015668          348 IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKE  393 (403)
Q Consensus       348 IlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~~  393 (403)
                      |+|.....      ++  +.. ..-.+|++.+| +...+|..+|...
T Consensus        69 Vidg~~~~------~~--~~~-~~~~~i~l~~~~~~r~~R~~~r~~~  106 (147)
T cd02020          69 VLEGRDIG------TV--VFP-DADLKIFLTASPEVRAKRRAKQLQA  106 (147)
T ss_pred             EEEeeeee------eE--EcC-CCCEEEEEECCHHHHHHHHHHHHHh
Confidence            99986431      11  111 12345677776 7888999887533

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.28  E-value=1.2e-05  Score=70.77  Aligned_cols=104  Identities=21%  Similarity=0.266  Sum_probs=63.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhc-CCCcc-c-CC---ChHHHHHHHHHHHHHHHHHHHHHh
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV-PGLLR-K-HN---YSERFQCLMGRANAIFDVLLSRAS  341 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~-~g~~~-~-~~---~~~~~~~~~~~a~~~~~~ll~~al  341 (403)
                      +|.+.|+|||||||+|+.+++.+.   +-++|.-.++.+|.. .|..- + +.   .++.++..+++-      +.+.+ 
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~g---l~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~r------q~e~a-   71 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLG---LKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRR------QKELA-   71 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhC---CceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHH------HHHHH-
Confidence            577889999999999999999987   677777665555532 34210 0 00   012233333221      22222 


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      + ..++|++.--.      -||  ++.+..+ -||+.+| ++..+|.++|+
T Consensus        72 ~-~~nvVlegrLA------~Wi--~k~~adl-kI~L~Apl~vRa~Ria~RE  112 (179)
T COG1102          72 K-EGNVVLEGRLA------GWI--VREYADL-KIWLKAPLEVRAERIAKRE  112 (179)
T ss_pred             H-cCCeEEhhhhH------HHH--hccccce-EEEEeCcHHHHHHHHHHhc
Confidence            3 77899986321      233  2223233 3688888 89999999997

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.26  E-value=6.1e-06  Score=74.15  Aligned_cols=25  Identities=20%  Similarity=0.478  Sum_probs=22.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ++|+++|++||||||+++.|++.++
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCc
Confidence            5899999999999999999998765

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK14526 adenylate kinase; Provisional

Probab=98.26  E-value=4.6e-06  Score=77.63  Aligned_cols=112  Identities=21%  Similarity=0.267  Sum_probs=62.1

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHHHHHh--
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLSRAS--  341 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~~al--  341 (403)
                      |+++|+|||||||+++.+++.+.   +.+++.+.+ |+++. .+.    ..+.....+++.-    ......++...+  
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~~---~~~is~G~llr~~~~-~~t----~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~   74 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNELN---YYHISTGDLFRENIL-NST----PLGKEIKQIVENGQLVPDSITIKIVEDKINT   74 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CceeecChHHHHhcc-cCC----hhhHHHHHHHHcCccCChHHHHHHHHHHHhc
Confidence            67899999999999999998876   677776655 55432 111    0111111111110    011112222222  


Q ss_pred             -cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          342 -RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       342 -~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                       .....+|||.---+.+ +...++.+  .....++++..| +++++|...|.
T Consensus        75 ~~~~~g~ilDGfPR~~~-Qa~~l~~~--~~~~~vi~l~~~~~~~~~Rl~~R~  123 (211)
T PRK14526         75 IKNNDNFILDGFPRNIN-QAKALDKF--LPNIKIINFLIDEELLIKRLSGRR  123 (211)
T ss_pred             ccccCcEEEECCCCCHH-HHHHHHHh--cCCCEEEEEECCHHHHHHHHHCCC
Confidence             2356799996433333 32233222  123456677777 78999999885

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.25  E-value=4.9e-06  Score=75.89  Aligned_cols=27  Identities=19%  Similarity=0.501  Sum_probs=24.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      .+.+|+|+|++||||||++++|.+.++
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~   29 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHP   29 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence            478999999999999999999998876

>PRK00698 tmk thymidylate kinase; Validated

Probab=98.25  E-value=2.1e-05  Score=71.99  Aligned_cols=123  Identities=16%  Similarity=0.074  Sum_probs=64.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEec-------cHHHHHHhhcCCCcccCC-ChHHHHHHHHHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLG-------TNLILEQMKVPGLLRKHN-YSERFQCLMGRANAIFDV  335 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls-------~D~ir~~l~~~g~~~~~~-~~~~~~~~~~~a~~~~~~  335 (403)
                      ..+|++.|++||||||+++.|.+.+...  .++...       .+.+++.+.  +...... +....-.+..+. ..+..
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~r~-~~~~~   79 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLL--DPNEEMDDKTELLLFYAARA-QHLEE   79 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHHh--ccccCCCHHHHHHHHHHHHH-HHHHH
Confidence            4689999999999999999998876332  122211       012333321  1000000 000001111121 12233


Q ss_pred             HHHHHhcCCCeEEEeCCCCCHHHH--------HHHHHHHhc-----CCcEEEEEECCh-HHHHHHHHHhc
Q 015668          336 LLSRASRTPRNFIIDQTNVFKSAR--------KRKLRLFVN-----FRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       336 ll~~al~~g~~vIlD~Tn~~~~~R--------~~~~~~~~~-----~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      .+..++.+|..||+|-.-.+.-..        ..|+..+..     ..+-.++++++| +++++|..+|.
T Consensus        80 ~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~  149 (205)
T PRK00698         80 VIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARG  149 (205)
T ss_pred             HHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            444566889999999321111000        123333322     124577899887 89999999986

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=98.22  E-value=1.2e-05  Score=71.74  Aligned_cols=39  Identities=23%  Similarity=0.335  Sum_probs=33.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK  308 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~  308 (403)
                      +.|+++|+|||||||+|+.+++.+.   +.+++.|.+.+...
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg---~~~~d~D~~~~~~~   41 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALG---YRFVDTDQWLQSTS   41 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC---CCEEEccHHHHHHh
Confidence            4688899999999999999999986   67889999887653

>PRK08233 hypothetical protein; Provisional

Probab=98.21  E-value=5e-06  Score=74.59  Aligned_cols=33  Identities=15%  Similarity=0.376  Sum_probs=26.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEe
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL  298 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~l  298 (403)
                      ..+|++.|.|||||||+|++|+..++....+.+
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~   35 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYF   35 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEE
Confidence            478899999999999999999998864333334

>PRK13973 thymidylate kinase; Provisional

Probab=98.21  E-value=3.3e-05  Score=71.89  Aligned_cols=124  Identities=16%  Similarity=0.116  Sum_probs=71.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEec---------cHHHHHHhhcCCCcccCCChHHHHHHHHHHH--HHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG---------TNLILEQMKVPGLLRKHNYSERFQCLMGRAN--AIFD  334 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls---------~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~--~~~~  334 (403)
                      ..+|++.|++||||||.++.+++.+...++.++.         .+.+|+.+.. +..  ...++.-..+.-.+.  ..+.
T Consensus         3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~-~~~--~~~~~~~~~ll~~a~r~~~~~   79 (213)
T PRK13973          3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLS-GAA--ELYGPRMEALLFAAARDDHVE   79 (213)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcC-CCc--cCCCHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999988544333332         2445665431 110  112222122211121  1233


Q ss_pred             HHHHHHhcCCCeEEEeCCCC----CHHHH----HHHHHHHhc----C-CcEEEEEECCh-HHHHHHHHHhcc
Q 015668          335 VLLSRASRTPRNFIIDQTNV----FKSAR----KRKLRLFVN----F-RKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       335 ~ll~~al~~g~~vIlD~Tn~----~~~~R----~~~~~~~~~----~-~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      .++.-++.+|..||.|--..    +...+    ..|+..+..    . .+-.++++++| +++++|..+|..
T Consensus        80 ~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~  151 (213)
T PRK13973         80 EVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRG  151 (213)
T ss_pred             HHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccC
Confidence            45566788999999987331    11111    113333322    1 25567899997 789999998864

>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]

Probab=98.19  E-value=1.3e-05  Score=80.75  Aligned_cols=122  Identities=20%  Similarity=0.166  Sum_probs=76.6

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc-----HHHHHHhhcCCCcccCCC---hHHHHHHHHH-HHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-----NLILEQMKVPGLLRKHNY---SERFQCLMGR-ANAIFD  334 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~-----D~ir~~l~~~g~~~~~~~---~~~~~~~~~~-a~~~~~  334 (403)
                      ....+|+|+|+|++|||.++.++.+.+.   |.-+++     -..+..+...-.. ...+   +.....+.++ +..++.
T Consensus        26 ~~~~~ivmvglpA~gKt~is~kl~ryl~---w~~~~tk~fn~g~yrr~~~~~~~s-~~ff~p~n~~~~~lr~~~a~~~l~  101 (438)
T KOG0234|consen   26 GSKLVIVMVGLPARGKTYISSKLTRYLN---WLGVNTKVFNVGEYRREAVKKVDS-EPFFLPDNAEASKLRKQLALLALN  101 (438)
T ss_pred             CCceEEEEecCCccCcchhhhhHHHHHH---hhccccccccHHHHHHHHhccccc-ccccccCChhhhhhhHHHHHHHhh
Confidence            4579999999999999999999999887   555443     2444443211100 0011   1111222232 334455


Q ss_pred             HHHHHHh-cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECC---hHHHHHHHHH
Q 015668          335 VLLSRAS-RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK---PEDLKIRSVK  389 (403)
Q Consensus       335 ~ll~~al-~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~---pe~~~~R~~~  389 (403)
                      .++.... ..|+++|+|+||.++..|+.++..+.+.+.+.+.++++   ++.++.+|..
T Consensus       102 D~~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~  160 (438)
T KOG0234|consen  102 DLLHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIR  160 (438)
T ss_pred             hHHHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhh
Confidence            6665554 68999999999999999998777775223444444433   3567777766

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=98.19  E-value=2.9e-05  Score=72.93  Aligned_cols=127  Identities=18%  Similarity=0.251  Sum_probs=88.6

Q ss_pred             CCCCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhc-CC--Ccc---cCCChHHHHH-----------
Q 015668          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV-PG--LLR---KHNYSERFQC-----------  324 (403)
Q Consensus       262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~-~g--~~~---~~~~~~~~~~-----------  324 (403)
                      .+..+.+|++-|.||-||||+|..++.++.-  -.+|++|.+|+-|.. -+  ..+   .+.| .+|+.           
T Consensus        85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI--~~visTD~IREvlR~ii~~~l~PtLh~Ssy-~Awkalr~~~~~~pii  161 (299)
T COG2074          85 KMKRPLIILIGGASGVGKSTIAGELARRLGI--RSVISTDSIREVLRKIISPELLPTLHTSSY-DAWKALRDPTDENPII  161 (299)
T ss_pred             ccCCCeEEEecCCCCCChhHHHHHHHHHcCC--ceeecchHHHHHHHHhCCHHhcchhhHhHH-HHHHHhcCCCCCcchh
Confidence            5567899999999999999999999999984  478999999988752 22  111   0111 12322           


Q ss_pred             --HHHHHHH---HHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECChHHHHHHHHHhcccc
Q 015668          325 --LMGRANA---IFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKPEDLKIRSVKRFKEM  394 (403)
Q Consensus       325 --~~~~a~~---~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~pe~~~~R~~~R~~~~  394 (403)
                        ..++++.   -.+..+++|+..|.++||...++-+..-+...  + +.+ -..++++.++++.+.|..+|.+..
T Consensus       162 aGF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~~--~-~~n~~~~~l~i~dee~Hr~RF~~R~~~t  234 (299)
T COG2074         162 AGFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEEA--L-GNNVFMFMLYIADEELHRERFYDRIRYT  234 (299)
T ss_pred             hhHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHhh--h-ccceEEEEEEeCCHHHHHHHHHHHHHHH
Confidence              2344443   35678899999999999999999997544321  2 222 233456677789999999997543

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.16  E-value=2.8e-06  Score=71.33  Aligned_cols=105  Identities=23%  Similarity=0.174  Sum_probs=54.5

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCccc---C---CC-hHHHHHHHHHHHHHHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRK---H---NY-SERFQCLMGRANAIFDVLLSRAS  341 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~---~---~~-~~~~~~~~~~a~~~~~~ll~~al  341 (403)
                      |++.|.|||||||+|+.|.+.+.   ..+.  |.+............   .   .. ......+.+.+.    .... ..
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~   70 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLG---DIIR--DIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSII----QAIR-RM   70 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC---HHHH--HHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHH----HHHH-HH
T ss_pred             CEEECCCCCCHHHHHHHHHHHHC---cHHH--HHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHH----Hhhc-cc
Confidence            78999999999999999998851   1111  221111100010000   0   00 111111222211    1111 34


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEE-EEECCh-HHHHHHHHHhccc
Q 015668          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAV-VVFPKP-EDLKIRSVKRFKE  393 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~v-v~l~~p-e~~~~R~~~R~~~  393 (403)
                      ..+.++|+|......          .... .... |+++++ +++.+|..+|...
T Consensus        71 ~~~~~~iid~~~~~~----------~~~~~~~~~~i~L~~~~e~~~~R~~~R~~~  115 (129)
T PF13238_consen   71 NKGRNIIIDGILSNL----------ELERLFDIKFIFLDCSPEELRKRLKKRGRK  115 (129)
T ss_dssp             TTTSCEEEEESSEEE----------CETTEEEESSEEEE--HHHHHHHHHCTTTS
T ss_pred             ccCCcEEEecccchh----------cccccceeeEEEEECCHHHHHHHHHhCCCC
Confidence            788999999875421          1111 2222 888887 8999999998753

...

>PRK06696 uridine kinase; Validated

Probab=98.15  E-value=6.3e-06  Score=77.18  Aligned_cols=40  Identities=23%  Similarity=0.278  Sum_probs=32.6

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLI  303 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~i  303 (403)
                      ..+.+|.+.|.|||||||+|++|++.++..  .+++++.|++
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf   61 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF   61 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence            357899999999999999999999988532  3677787754

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=98.13  E-value=1.5e-05  Score=72.61  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=21.3

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +|++.|++||||||+++.|.+.+.
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~   24 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLG   24 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999998754

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=98.11  E-value=1.4e-05  Score=73.44  Aligned_cols=39  Identities=18%  Similarity=0.193  Sum_probs=32.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK  308 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~  308 (403)
                      .+|.++|.+||||||+++.+.+.+.   +.+++.|.+..++.
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g---~~~i~~D~~~~~~~   40 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKG---IPILDADIYAREAL   40 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhC---CeEeeCcHHHHHHH
Confidence            4689999999999999999998754   67899998766553

>PRK08356 hypothetical protein; Provisional

Probab=98.10  E-value=3.5e-05  Score=70.56  Aligned_cols=114  Identities=17%  Similarity=0.145  Sum_probs=59.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCCh-H-HH------HHHHHHHHHH----
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYS-E-RF------QCLMGRANAI----  332 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~-~-~~------~~~~~~a~~~----  332 (403)
                      ..+|+++|+|||||||+|+.|. +..   +.+|+..+. ++.+...+.  ++.+- . .+      +...+.+...    
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~-~~g---~~~is~~~~~~~~~~~~~~--~~~f~~~~~~~~~~~~~~~~e~g~~~~~~y   78 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFE-EKG---FCRVSCSDPLIDLLTHNVS--DYSWVPEVPFKGEPTRENLIELGRYLKEKY   78 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHH-HCC---CcEEeCCCccccccccccc--ccccccHHHHhhccccccHHHHHHHHHHhc
Confidence            3678999999999999999995 443   446665532 221111111  11100 0 00      1112211110    


Q ss_pred             -----HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668          333 -----FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       333 -----~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                           .+..++. ++....+|||.- -+...++.    +.... ..+|++++| +++.+|+.+|..
T Consensus        79 G~~~~~~~~~~~-~~~~~~ividG~-r~~~q~~~----l~~~~-~~vi~l~~~~~~~~~Rl~~R~~  137 (195)
T PRK08356         79 GEDILIRLAVDK-KRNCKNIAIDGV-RSRGEVEA----IKRMG-GKVIYVEAKPEIRFERLRRRGA  137 (195)
T ss_pred             CcHHHHHHHHHH-hccCCeEEEcCc-CCHHHHHH----HHhcC-CEEEEEECCHHHHHHHHHhcCC
Confidence                 1112222 233457999965 44443332    33322 356788886 889999988864

>TIGR00152 dephospho-CoA kinase

Probab=98.08  E-value=1.5e-05  Score=72.51  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=30.8

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      +|.++|.+||||||+++.+.+...   +.+++.|.+..++
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~---~~~i~~D~~~~~~   37 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYH---FPVIDADKIAHQV   37 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcC---CeEEeCCHHHHHH
Confidence            478999999999999999998753   6789999875544

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK13975 thymidylate kinase; Provisional

Probab=98.07  E-value=3.6e-05  Score=70.11  Aligned_cols=116  Identities=18%  Similarity=0.202  Sum_probs=60.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH-----HHHHHhhcCCCcccCCChHHHHHHH--HHHHHHHHHHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN-----LILEQMKVPGLLRKHNYSERFQCLM--GRANAIFDVLLSR  339 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D-----~ir~~l~~~g~~~~~~~~~~~~~~~--~~a~~~~~~ll~~  339 (403)
                      .+|++.|++||||||+++.|++.+... +.....|     .+++-+. .+.    ........+.  ++. +.+++ ++.
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~-~~~~~~~~~~g~~ir~~~~-~~~----~~~~~~~~~f~~~r~-~~~~~-i~~   74 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLNAF-WTCEPTDGKIGKLIREILS-GSK----CDKETLALLFAADRV-EHVKE-IEE   74 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCC-eeECCCCChHHHHHHHHHc-cCC----CCHHHHHHHHHHHHH-HHHHH-HHH
Confidence            689999999999999999999998632 2222222     2333221 110    0011111111  111 11222 333


Q ss_pred             HhcCCCeEEEeCCCC----CHHHH---HHHHHHHhcC--CcEEEEEECCh-HHHHHHHHHhc
Q 015668          340 ASRTPRNFIIDQTNV----FKSAR---KRKLRLFVNF--RKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       340 al~~g~~vIlD~Tn~----~~~~R---~~~~~~~~~~--~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      ++.. ..||.|---.    +...+   ..++......  .+-.+++++++ +++++|..+|.
T Consensus        75 ~~~~-~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~  135 (196)
T PRK13975         75 DLKK-RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRD  135 (196)
T ss_pred             HHcC-CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccC
Confidence            3444 6789984211    11110   1122222222  23357799987 89999999885

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.07  E-value=4.8e-05  Score=69.88  Aligned_cols=27  Identities=19%  Similarity=0.407  Sum_probs=24.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..++|+++|++||||||+++.++..++
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            468999999999999999999998875

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=98.06  E-value=2e-05  Score=77.63  Aligned_cols=114  Identities=15%  Similarity=0.134  Sum_probs=61.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~  345 (403)
                      ...|+++|+|||||||+++.+++.+.   +.+++.|..+++..  |..-...+....+.....   ...+++..++....
T Consensus       133 ~~~I~l~G~~GsGKStvg~~La~~Lg---~~~id~D~~i~~~~--G~~i~ei~~~~G~~~fr~---~e~~~l~~ll~~~~  204 (309)
T PRK08154        133 RRRIALIGLRGAGKSTLGRMLAARLG---VPFVELNREIEREA--GLSVSEIFALYGQEGYRR---LERRALERLIAEHE  204 (309)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHcC---CCEEeHHHHHHHHh--CCCHHHHHHHHCHHHHHH---HHHHHHHHHHhhCC
Confidence            46899999999999999999999886   55667787665542  321100000000111111   11223333333333


Q ss_pred             eEEEeC-CCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          346 NFIIDQ-TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       346 ~vIlD~-Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      .+||.. ..+....+  .+..+..  ...+||+.+| +.+.+|+.+|.
T Consensus       205 ~~VI~~Ggg~v~~~~--~~~~l~~--~~~~V~L~a~~e~~~~Rl~~r~  248 (309)
T PRK08154        205 EMVLATGGGIVSEPA--TFDLLLS--HCYTVWLKASPEEHMARVRAQG  248 (309)
T ss_pred             CEEEECCCchhCCHH--HHHHHHh--CCEEEEEECCHHHHHHHHhcCC
Confidence            345544 33211111  1111222  3457889887 88999998875

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=98.01  E-value=3.5e-05  Score=70.66  Aligned_cols=38  Identities=18%  Similarity=0.224  Sum_probs=31.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      +.+|.++|.+||||||+++.+.+ +.   +.+++.|.+..++
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~-~g---~~~i~~D~~~~~~   39 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAE-LG---APVIDADAIAHEV   39 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-cC---CEEEEecHHHHHH
Confidence            35799999999999999999987 54   6789999876554

>PRK06761 hypothetical protein; Provisional

Probab=97.99  E-value=5.7e-05  Score=73.17  Aligned_cols=120  Identities=17%  Similarity=0.172  Sum_probs=72.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEE---EeccHH-HHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYI---LLGTNL-ILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR  342 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v---~ls~D~-ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~  342 (403)
                      .+|+++|+|||||||+++.+++.+....+-   ....|. ....+  .+.  .......+....++.......+++.+..
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~--~~~--~~~~~eer~~~l~~~~~f~~~l~~~~~~   79 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADY--DGV--ACFTKEEFDRLLSNYPDFKEVLLKNVLK   79 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhh--ccc--cCCCHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            589999999999999999999988643221   111111 11111  111  1111234444444444434456667778


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      .|..+|+--.-+....|..+-...-...++..++ +.| +.+.+|...|-
T Consensus        80 ~g~~~i~~~~~l~~~yr~~~~~~~~~~~~v~~~h-~~p~e~i~~R~~~rw  128 (282)
T PRK06761         80 KGDYYLLPYRKIKNEFGDQFSDELFNDISKNDIY-ELPFDKNTELITDRW  128 (282)
T ss_pred             cCCeEEEEehhhhHHHhhhhhhhhcccceeeeee-cCCHHHHHHHHHHHH
Confidence            9999999887777777765332122222455566 667 77888887775

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=97.99  E-value=0.00012  Score=64.20  Aligned_cols=129  Identities=16%  Similarity=0.148  Sum_probs=84.2

Q ss_pred             CCCCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhc------CCCcccC---CChHH-----HHHHHH
Q 015668          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV------PGLLRKH---NYSER-----FQCLMG  327 (403)
Q Consensus       262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~------~g~~~~~---~~~~~-----~~~~~~  327 (403)
                      .+...++|+|-|.|-||||++|..+..-. +..|.+|.-|.+++.+.-      .|-..+.   .....     ...+.+
T Consensus        19 g~~~griVlLNG~~saGKSSiA~A~Q~~~-a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e   97 (205)
T COG3896          19 GMPEGRIVLLNGGSSAGKSSIALAFQDLA-AEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILE   97 (205)
T ss_pred             CCCCceEEEecCCCccchhHHHHHHHHHh-hcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHH
Confidence            34567999999999999999999987544 345999999998877631      1100000   00111     133455


Q ss_pred             HHHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668          328 RANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       328 ~a~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      .+..-.+..+...+.+|-++|.|+.-.++..--.-++.+.++ ++.+|=+.+| |+..+|-..|..
T Consensus        98 ~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~-~v~~VGV~~p~E~~~~Re~rr~d  162 (205)
T COG3896          98 LAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGC-RVWMVGVHVPDEEGARRELRRGD  162 (205)
T ss_pred             HHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCC-ceEEEEeeccHHHHHHHHhhcCC
Confidence            554445556656679999999999888765443334444443 7888888888 777666665653

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.98  E-value=8.8e-05  Score=72.22  Aligned_cols=97  Identities=13%  Similarity=0.112  Sum_probs=60.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHH-hcC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA-SRT  343 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~a-l~~  343 (403)
                      ..++|+++|++||||||+++.+... .   +..+  |.+-              ...+....+.+        ... ...
T Consensus         5 ~~~~i~i~G~~GsGKtt~~~~l~~~-g---~~~~--d~~~--------------~~L~~~l~~~~--------~~~~~~~   56 (288)
T PRK05416          5 PMRLVIVTGLSGAGKSVALRALEDL-G---YYCV--DNLP--------------PSLLPKLVELL--------AQSGGIR   56 (288)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHc-C---CeEE--CCcC--------------HHHHHHHHHHH--------HhcCCCC
Confidence            4579999999999999999999632 2   4444  2110              01111111111        110 124


Q ss_pred             CCeEEEeCCCCC-HHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHH
Q 015668          344 PRNFIIDQTNVF-KSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVK  389 (403)
Q Consensus       344 g~~vIlD~Tn~~-~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~  389 (403)
                      +-.+++|.++.. .......++.+++.+ .+.+||++++ +++.+|..+
T Consensus        57 ~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~  105 (288)
T PRK05416         57 KVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSE  105 (288)
T ss_pred             CeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhh
Confidence            568999998652 122334566666655 6778999997 899999875

>smart00072 GuKc Guanylate kinase homologues

Probab=97.98  E-value=2.1e-05  Score=71.44  Aligned_cols=26  Identities=19%  Similarity=0.373  Sum_probs=23.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      .++|+++|++||||+|++++|.+..+
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~   27 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIP   27 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCC
Confidence            46899999999999999999999875

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.96  E-value=1.4e-05  Score=72.04  Aligned_cols=117  Identities=16%  Similarity=0.216  Sum_probs=64.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcc--cCCC--hHHHHHHHHHHH----------
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLR--KHNY--SERFQCLMGRAN----------  330 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~--~~~~--~~~~~~~~~~a~----------  330 (403)
                      ...+++++|++|+||||++++|.+...  -...||.-. |..  ..|...  ++.|  ...++.++++-.          
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~--l~~SVS~TT-R~p--R~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gn   77 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDK--LRFSVSATT-RKP--RPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGN   77 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcC--eEEEEEecc-CCC--CCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCC
Confidence            357999999999999999999998763  123333221 100  011111  1111  122222222100          


Q ss_pred             --HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh--HHHHHHHHHhcc
Q 015668          331 --AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP--EDLKIRSVKRFK  392 (403)
Q Consensus       331 --~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p--e~~~~R~~~R~~  392 (403)
                        -.....++.++..|++||+|-..- -. ++  +  -..+.....+++..|  +++.+|+..|..
T Consensus        78 yYGT~~~~ve~~~~~G~~vildId~q-Ga-~q--v--k~~~p~~v~IFi~pPs~eeL~~RL~~Rgt  137 (191)
T COG0194          78 YYGTSREPVEQALAEGKDVILDIDVQ-GA-LQ--V--KKKMPNAVSIFILPPSLEELERRLKGRGT  137 (191)
T ss_pred             cccCcHHHHHHHHhcCCeEEEEEehH-HH-HH--H--HHhCCCeEEEEEcCCCHHHHHHHHHccCC
Confidence              001234556678999999997532 11 11  1  112335666777666  899999999874

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.95  E-value=7.1e-05  Score=78.12  Aligned_cols=36  Identities=19%  Similarity=0.314  Sum_probs=32.3

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      |+++|+|||||||+++.+++.+.   +.++++|.++++.
T Consensus         3 I~l~G~~GsGKSTv~~~La~~lg---~~~id~D~~i~~~   38 (488)
T PRK13951          3 IFLVGMMGSGKSTIGKRVSEVLD---LQFIDMDEEIERR   38 (488)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC---CeEEECcHHHHHH
Confidence            78999999999999999999886   7888999988774

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.93  E-value=2.1e-05  Score=72.76  Aligned_cols=39  Identities=18%  Similarity=0.187  Sum_probs=33.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i  303 (403)
                      .+.+|.++|.+||||||+++.+.+.++...+.+++.|.+
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~   43 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY   43 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence            478999999999999999999999885445677888864

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=97.93  E-value=4e-05  Score=69.23  Aligned_cols=36  Identities=19%  Similarity=0.222  Sum_probs=30.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      +|.++|.|||||||+++.+.+ +.   +.+++.|.+..++
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g---~~~i~~D~~~~~~   36 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LG---IPVIDADKIAHEV   36 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CC---CCEEecCHHHHhh
Confidence            478999999999999999988 44   7789999876555

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.92  E-value=0.00011  Score=77.81  Aligned_cols=114  Identities=11%  Similarity=0.053  Sum_probs=64.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~  345 (403)
                      ...|+|+|+|||||||+++.+++.+.   +-.+++|...++..  |..-..-+...-+....+.   -.+++..++... 
T Consensus         6 ~~~i~LiG~~GaGKttvg~~LA~~L~---~~fiD~D~~ie~~~--g~si~eif~~~Ge~~FR~~---E~~~l~~~~~~~-   76 (542)
T PRK14021          6 RPQAVIIGMMGAGKTRVGKEVAQMMR---LPFADADVEIEREI--GMSIPSYFEEYGEPAFREV---EADVVADMLEDF-   76 (542)
T ss_pred             CccEEEECCCCCCHHHHHHHHHHHhC---CCEEEchHHHHHHH--CcCHHHHHHHHHHHHHHHH---HHHHHHHHHhcC-
Confidence            35688999999999999999999997   67888898776643  3210000111101122111   112333333333 


Q ss_pred             eEEEeC---CCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 015668          346 NFIIDQ---TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR  390 (403)
Q Consensus       346 ~vIlD~---Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R  390 (403)
                      +.||..   +-..+..|+.+.+.+++.  -.+||+..+ +++.+|...+
T Consensus        77 ~~VIs~GGG~v~~~~n~~~L~~~~~~~--g~vv~L~~~~~~l~~Rl~~~  123 (542)
T PRK14021         77 DGIFSLGGGAPMTPSTQHALASYIAHG--GRVVYLDADPKEAMERANRG  123 (542)
T ss_pred             CeEEECCCchhCCHHHHHHHHHHHhcC--CEEEEEECCHHHHHHHHhCC
Confidence            445543   234455555322233332  257899986 8999998643

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=97.89  E-value=2.5e-05  Score=71.31  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=29.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i  303 (403)
                      +|.++|.|||||||+|+.+++.+..  ..+|+.|.+
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~--~~~i~~Ddf   34 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPN--CCVIHQDDF   34 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCC--CeEEccccc
Confidence            5788999999999999999998853  677888865

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PLN02199 shikimate kinase

Probab=97.87  E-value=9.1e-05  Score=71.85  Aligned_cols=108  Identities=18%  Similarity=0.188  Sum_probs=62.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHH-HHHHHHHHHHHHHHHHHHhcCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERF-QCLMGRANAIFDVLLSRASRTP  344 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~-~~~~~~a~~~~~~ll~~al~~g  344 (403)
                      ..-|+|+|++||||||+++.+++.+.   +..|++|.+.++.. .|..-..-+ ..+ +......   ..+++..+... 
T Consensus       102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg---~~fIDtD~lIe~~~-~G~sI~eIf-~~~GE~~FR~~---E~e~L~~L~~~-  172 (303)
T PLN02199        102 GRSMYLVGMMGSGKTTVGKLMSKVLG---YTFFDCDTLIEQAM-NGTSVAEIF-VHHGENFFRGK---ETDALKKLSSR-  172 (303)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC---CCEEehHHHHHHHh-cCCCHHHHH-HHhCHHHHHHH---HHHHHHHHHhc-
Confidence            35689999999999999999999886   78899998877642 132100000 000 1111111   12233333333 


Q ss_pred             CeEEEeCC---CCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHH
Q 015668          345 RNFIIDQT---NVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK  389 (403)
Q Consensus       345 ~~vIlD~T---n~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~  389 (403)
                      ..+||...   -..+..|    +.+..  . .+||++.+ +++.+|+..
T Consensus       173 ~~~VIStGGG~V~~~~n~----~~L~~--G-~vV~Ldas~E~l~~RL~~  214 (303)
T PLN02199        173 YQVVVSTGGGAVIRPINW----KYMHK--G-ISIWLDVPLEALAHRIAA  214 (303)
T ss_pred             CCEEEECCCcccCCHHHH----HHHhC--C-eEEEEECCHHHHHHHHhh
Confidence            35566541   2333333    22331  2 46899997 899999985

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.86  E-value=3.8e-05  Score=71.10  Aligned_cols=28  Identities=11%  Similarity=0.125  Sum_probs=24.1

Q ss_pred             CCCceEEEEEccCCCChhHHHHHHHHhC
Q 015668          263 MKDCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       263 ~~~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ...+.+|+++|+|||||||+++.|.+..
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~   37 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRERK   37 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence            3567999999999999999999997643

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=97.86  E-value=0.00015  Score=67.68  Aligned_cols=24  Identities=29%  Similarity=0.281  Sum_probs=21.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +|++-|.-||||||+++.|++.+.
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~   24 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLG   24 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhC
Confidence            478899999999999999998775

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=97.85  E-value=0.00019  Score=63.61  Aligned_cols=102  Identities=22%  Similarity=0.186  Sum_probs=67.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF  347 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~v  347 (403)
                      ||+-++.+|+||||+|..|..-+++  |-++-.|.|      .+. +    .   ...++.+.   +.+   +......|
T Consensus         1 vlvPIAtiGCGKTTva~aL~~LFg~--wgHvQnDnI------~~k-~----~---~~f~~~~l---~~L---~~~~~~vV   58 (168)
T PF08303_consen    1 VLVPIATIGCGKTTVALALSNLFGE--WGHVQNDNI------TGK-R----K---PKFIKAVL---ELL---AKDTHPVV   58 (168)
T ss_pred             CEeeecCCCcCHHHHHHHHHHHcCC--CCccccCCC------CCC-C----H---HHHHHHHH---HHH---hhCCCCEE
Confidence            4677899999999999999998875  777877763      121 0    1   12222221   111   22677899


Q ss_pred             EEeCCCCCHHHHHHHHHHHhcCC--------c---EEEEEECC-h-----HHHHHHHHHhc
Q 015668          348 IIDQTNVFKSARKRKLRLFVNFR--------K---IAVVVFPK-P-----EDLKIRSVKRF  391 (403)
Q Consensus       348 IlD~Tn~~~~~R~~~~~~~~~~~--------~---~~vv~l~~-p-----e~~~~R~~~R~  391 (403)
                      |+|-.|.....|+.++..+....        .   +++.|+.. +     ..+.+|+.+|-
T Consensus        59 iaDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RG  119 (168)
T PF08303_consen   59 IADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARG  119 (168)
T ss_pred             EEeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999888877532        2   23445543 2     35777888875

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PLN02924 thymidylate kinase

Probab=97.84  E-value=0.00018  Score=67.39  Aligned_cols=120  Identities=16%  Similarity=0.067  Sum_probs=66.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccE--EEec-----cH---HHHHHhhcCCCcccCCChHHHHHHHHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLG-----TN---LILEQMKVPGLLRKHNYSERFQCLMGRANAIFD  334 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~--v~ls-----~D---~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~  334 (403)
                      ...+|++.|++||||||.++.|++.+...++  +.+.     +.   .+++-+. .+. .-......+-...+++..  .
T Consensus        15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~-~~~-~~~~~~~~llf~adR~~~--~   90 (220)
T PLN02924         15 RGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLS-NKS-QLDDRAIHLLFSANRWEK--R   90 (220)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHh-CCC-CCCHHHHHHHHHHHHHHH--H
Confidence            3689999999999999999999988764322  2211     11   2444332 111 000001111111222221  2


Q ss_pred             HHHHHHhcCCCeEEEeCCCCCHHHH-------HHHHHHHhcCC--cEEEEEECCh-HHHHHHHH
Q 015668          335 VLLSRASRTPRNFIIDQTNVFKSAR-------KRKLRLFVNFR--KIAVVVFPKP-EDLKIRSV  388 (403)
Q Consensus       335 ~ll~~al~~g~~vIlD~Tn~~~~~R-------~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~  388 (403)
                      ..+..++.+|..||.|--..+.-+.       ..|+..+....  +-.+++++.| +++++|..
T Consensus        91 ~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~  154 (220)
T PLN02924         91 SLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGG  154 (220)
T ss_pred             HHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhc
Confidence            3456678899999999854432111       12344333322  4567899986 88888854

>PLN02422 dephospho-CoA kinase

Probab=97.80  E-value=0.00018  Score=67.88  Aligned_cols=37  Identities=19%  Similarity=0.237  Sum_probs=30.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      .+|.++|.+||||||+++.+.+ ..   +.+++.|.+..++
T Consensus         2 ~~igltG~igsGKstv~~~l~~-~g---~~~idaD~~~~~l   38 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFKS-SG---IPVVDADKVARDV   38 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CC---CeEEehhHHHHHH
Confidence            4789999999999999999984 43   7889999875554

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=97.78  E-value=0.00016  Score=66.60  Aligned_cols=37  Identities=16%  Similarity=0.274  Sum_probs=30.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      .+|.++|.+||||||+++.++. ..   +.+|+.|.+..++
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g---~~vid~D~i~~~~   38 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EG---FLIVDADQVARDI   38 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CC---CeEEeCcHHHHHH
Confidence            4789999999999999999986 33   7889999764444

>PRK07667 uridine kinase; Provisional

Probab=97.74  E-value=0.0002  Score=65.50  Aligned_cols=38  Identities=18%  Similarity=0.283  Sum_probs=31.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLI  303 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~i  303 (403)
                      ..+|.++|+|||||||+|+.+.+.+...  ...+++.|.+
T Consensus        17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~   56 (193)
T PRK07667         17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY   56 (193)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence            4799999999999999999999876432  3678888874

>PRK13974 thymidylate kinase; Provisional

Probab=97.74  E-value=0.00033  Score=65.06  Aligned_cols=122  Identities=14%  Similarity=0.068  Sum_probs=65.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccE------EEecc--------HHHHHHhhc-CCCcccCCChHHHHH---HHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRY------ILLGT--------NLILEQMKV-PGLLRKHNYSERFQC---LMG  327 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~------v~ls~--------D~ir~~l~~-~g~~~~~~~~~~~~~---~~~  327 (403)
                      .++|++.|++||||||.++.+++.++..+.      +++..        ..+|+.+.. .|..   ...+.-..   +.+
T Consensus         3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~---~~~~~~~~llf~ad   79 (212)
T PRK13974          3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDN---SPSPLAELLLYAAD   79 (212)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCccc---CCCHHHHHHHHHHH
Confidence            478999999999999999999988764321      11111        124444321 1110   01111111   122


Q ss_pred             HHHHHHHHHHHHHhcCCCeEEEeCCCCC-HHH-------HHHHHHHHh---c--CCcEEEEEECCh-HHHHHHHHHhc
Q 015668          328 RANAIFDVLLSRASRTPRNFIIDQTNVF-KSA-------RKRKLRLFV---N--FRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       328 ~a~~~~~~ll~~al~~g~~vIlD~Tn~~-~~~-------R~~~~~~~~---~--~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      ++. .+..++.-++.+|..||.|-=-.+ -..       -..|+..+.   .  ..+-.++++++| +++.+|...|.
T Consensus        80 r~~-~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~  156 (212)
T PRK13974         80 RAQ-HVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRK  156 (212)
T ss_pred             HHH-HHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence            222 233345556788988887751111 000       011233332   1  125567899997 78899988774

>TIGR00235 udk uridine kinase

Probab=97.74  E-value=9.8e-05  Score=68.25  Aligned_cols=40  Identities=20%  Similarity=0.186  Sum_probs=32.3

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i  303 (403)
                      ....+|.++|++||||||+++.++..++.....+++.|..
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~   43 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY   43 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence            3468999999999999999999998776433567777764

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.73  E-value=0.00013  Score=63.39  Aligned_cols=101  Identities=27%  Similarity=0.400  Sum_probs=54.2

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHH-HHHHHHHHHHHHHHHHhcCCCeE
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQC-LMGRANAIFDVLLSRASRTPRNF  347 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~-~~~~a~~~~~~ll~~al~~g~~v  347 (403)
                      |+++|-||.||||++.++++...- .|+-+ .|.+++.-...|      |...++- ..+. .+ +...++-++.. -..
T Consensus        10 ILvtGTPG~GKstl~~~lae~~~~-~~i~i-sd~vkEn~l~~g------yDE~y~c~i~DE-dk-v~D~Le~~m~~-Gg~   78 (176)
T KOG3347|consen   10 ILVTGTPGTGKSTLAERLAEKTGL-EYIEI-SDLVKENNLYEG------YDEEYKCHILDE-DK-VLDELEPLMIE-GGN   78 (176)
T ss_pred             EEEeCCCCCCchhHHHHHHHHhCC-ceEeh-hhHHhhhcchhc------ccccccCccccH-HH-HHHHHHHHHhc-CCc
Confidence            678999999999999999987652 24443 233343321112      1122211 0000 01 11223333344 456


Q ss_pred             EEeC--CCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          348 IIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       348 IlD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      |+|.  +-+.+.   +|+        -.+|++.+| +.+..|++.|.
T Consensus        79 IVDyHgCd~Fpe---rwf--------dlVvVLr~~~s~LY~RL~sRg  114 (176)
T KOG3347|consen   79 IVDYHGCDFFPE---RWF--------DLVVVLRTPNSVLYDRLKSRG  114 (176)
T ss_pred             EEeecccCccch---hhe--------eEEEEEecCchHHHHHHHHcC
Confidence            7775  222221   111        245678888 89999999985

>PLN02842 nucleotide kinase

Probab=97.71  E-value=0.00032  Score=72.92  Aligned_cols=110  Identities=20%  Similarity=0.268  Sum_probs=58.7

Q ss_pred             EEEccCCCChhHHHHHHHHhCCCccEEEeccHH-HHHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHhc--
Q 015668          270 MMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR--  342 (403)
Q Consensus       270 ll~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~-ir~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al~--  342 (403)
                      |++|.|||||||.|+.+++.+.   +.+|++++ +|.++. .+.    ..+....+++..    -...+..++...+.  
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg---~~hIs~gdLLR~ev~-~~T----~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~   72 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFG---LVHISTGDLLRAEVS-AGT----DIGKRAKEFMNSGRLVPDEIVIAMVTGRLSRE   72 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhC---CCEEEccHHHHHHhc-cCC----HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCc
Confidence            5799999999999999999886   56776655 455432 111    001111111110    00111112211111  


Q ss_pred             --CCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668          343 --TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       343 --~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                        ....+|||.---+.. +   .+.+....  .-.+++++.+ +.+++|...|.
T Consensus        73 ~~~~~G~ILDGfPRt~~-Q---a~~Le~~~~~PDlVI~LDvpdevlleRl~gR~  122 (505)
T PLN02842         73 DAKEKGWLLDGYPRSFA-Q---AQSLEKLKIRPDIFILLDVPDEILIDRCVGRR  122 (505)
T ss_pred             cccCCcEEEeCCCCcHH-H---HHHHHhcCCCCCEEEEEeCCHHHHHHHHhccc
Confidence              234588897323222 2   22233333  3457789997 78999988874

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=97.70  E-value=0.00032  Score=64.57  Aligned_cols=126  Identities=19%  Similarity=0.173  Sum_probs=67.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccE-EEeccHHHHHHhhcCCCcccCCChHHHHHHHHH--HHHHHHHHHHHHhc
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRY-ILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR--ANAIFDVLLSRASR  342 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~-v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~--a~~~~~~ll~~al~  342 (403)
                      ..+|++.|+=|+||||+|+.|++.++.+.. ..+..|-+++.+..  .      -.+|....+.  ..+.+..+. .+.+
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~--d------~~~yaf~~QiyFL~~Rfk~~k-~~~~   74 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYE--D------PERYAFLLQIYFLLNRFKKIK-KALS   74 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHHH--h------HHHhhHHHHHHHHHHHHHHHH-HHhc
Confidence            468899999999999999999999985432 33333444444321  0      1122211110  011111111 1222


Q ss_pred             C-----CCeEEEeC----------CCCCHHHHHHH---HH----HHhcCC--cEEEEEECCh-HHHHHHHHHhccccCcc
Q 015668          343 T-----PRNFIIDQ----------TNVFKSARKRK---LR----LFVNFR--KIAVVVFPKP-EDLKIRSVKRFKEMGKE  397 (403)
Q Consensus       343 ~-----g~~vIlD~----------Tn~~~~~R~~~---~~----~~~~~~--~~~vv~l~~p-e~~~~R~~~R~~~~g~~  397 (403)
                      .     +++++-|.          .|++++.-.-.   ++    .+....  +-.+|++++. +++++|..+|.++.-..
T Consensus        75 ~~~~i~drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~RgR~~E~~  154 (216)
T COG1428          75 DKNNILDRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGRPFEID  154 (216)
T ss_pred             ccccccCcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHhCCCcccc
Confidence            2     33444443          33344322211   22    111122  4567899997 99999999999876654


Q ss_pred             ccc
Q 015668          398 QIM  400 (403)
Q Consensus       398 Vp~  400 (403)
                      ..+
T Consensus       155 ~~~  157 (216)
T COG1428         155 NFD  157 (216)
T ss_pred             ccc
Confidence            443

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=97.69  E-value=0.00013  Score=66.11  Aligned_cols=27  Identities=30%  Similarity=0.621  Sum_probs=24.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      .++|+|+|++||||||++++|.+.++.
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~   28 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPD   28 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhccc
Confidence            478999999999999999999998875

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=97.67  E-value=0.00026  Score=62.60  Aligned_cols=103  Identities=17%  Similarity=0.134  Sum_probs=58.5

Q ss_pred             CCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeC---
Q 015668          275 PASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQ---  351 (403)
Q Consensus       275 PGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~vIlD~---  351 (403)
                      |||||||+++.+++.+.   +-.++.|...++..  |..-..-+...-+...   ++.-.+++..++... +.||..   
T Consensus         1 ~GsGKStvg~~lA~~L~---~~fiD~D~~i~~~~--g~si~~i~~~~G~~~f---r~~E~~~l~~l~~~~-~~VIa~GGG   71 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLG---RPFIDLDDEIEERT--GMSISEIFAEEGEEAF---RELESEALRELLKEN-NCVIACGGG   71 (158)
T ss_dssp             TTSSHHHHHHHHHHHHT---SEEEEHHHHHHHHH--TSHHHHHHHHHHHHHH---HHHHHHHHHHHHCSS-SEEEEE-TT
T ss_pred             CCCcHHHHHHHHHHHhC---CCccccCHHHHHHh--CCcHHHHHHcCChHHH---HHHHHHHHHHHhccC-cEEEeCCCC
Confidence            79999999999999997   78898998776643  3110000000001111   112223444444544 666665   


Q ss_pred             CCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668          352 TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       352 Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      +-..+..|+    .++  ..-.+||++.+ +++.+|+..+..
T Consensus        72 ~~~~~~~~~----~L~--~~g~vI~L~~~~~~l~~Rl~~~~~  107 (158)
T PF01202_consen   72 IVLKEENRE----LLK--ENGLVIYLDADPEELAERLRARDN  107 (158)
T ss_dssp             GGGSHHHHH----HHH--HHSEEEEEE--HHHHHHHHHHHCT
T ss_pred             CcCcHHHHH----HHH--hCCEEEEEeCCHHHHHHHHhCCCC
Confidence            444444443    233  23457888886 899999987764

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.67  E-value=0.00012  Score=68.56  Aligned_cols=36  Identities=22%  Similarity=0.145  Sum_probs=28.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLI  303 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~i  303 (403)
                      +|.++|.+||||||+|+.++..+.    .....+|+.|..
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f   40 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF   40 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence            467899999999999999998773    234667777854

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PLN02772 guanylate kinase

Probab=97.54  E-value=0.00056  Score=68.93  Aligned_cols=27  Identities=22%  Similarity=0.356  Sum_probs=24.2

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..++|+++|++|+||||++++|.++.+
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p  160 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFP  160 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhcc
Confidence            458999999999999999999988765

>PRK07933 thymidylate kinase; Validated

Probab=97.54  E-value=0.00078  Score=62.73  Aligned_cols=121  Identities=20%  Similarity=0.144  Sum_probs=66.9

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCcc--EEEec---------cHHHHHHhhcCCCcccCCChHHHHHH---HHHHHHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKR--YILLG---------TNLILEQMKVPGLLRKHNYSERFQCL---MGRANAIF  333 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~--~v~ls---------~D~ir~~l~~~g~~~~~~~~~~~~~~---~~~a~~~~  333 (403)
                      +|++.|+-||||||.++.|.+.+..++  ++.+.         .+.+|+.+.  +........+....+   .+++.. +
T Consensus         2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~--~~~~~~~~~~~~~~llf~a~R~~~-~   78 (213)
T PRK07933          2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALH--GRHGDLADSVYAMATLFALDRAGA-R   78 (213)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHc--CCCCcccCCHHHHHHHHhhhhhhh-H
Confidence            789999999999999999998876432  22221         134555443  110000001111111   122221 2


Q ss_pred             HHHHHHHhcCCCeEEEeCCCCCH----HHH---------HHHHHHHhc--C---CcEEEEEECCh-HHHHHHHHHhcc
Q 015668          334 DVLLSRASRTPRNFIIDQTNVFK----SAR---------KRKLRLFVN--F---RKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       334 ~~ll~~al~~g~~vIlD~Tn~~~----~~R---------~~~~~~~~~--~---~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      . .+.-++.+|..||.|--..+-    ..+         ..|+..+..  .   .+=.+++++.| ++.++|..+|..
T Consensus        79 ~-~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~  155 (213)
T PRK07933         79 D-ELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAA  155 (213)
T ss_pred             H-HHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhcc
Confidence            2 244567889999999732222    111         224444432  1   14467899986 889999998864

>PLN02165 adenylate isopentenyltransferase

Probab=97.52  E-value=0.00062  Score=67.30  Aligned_cols=35  Identities=17%  Similarity=0.375  Sum_probs=31.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i  303 (403)
                      ..+|+++|++||||||+|..++..++   ..+||.|.+
T Consensus        43 g~iivIiGPTGSGKStLA~~LA~~l~---~eIIsaDs~   77 (334)
T PLN02165         43 DKVVVIMGATGSGKSRLSVDLATRFP---SEIINSDKM   77 (334)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHcC---CceecCChh
Confidence            45899999999999999999999987   578888875

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=97.51  E-value=0.0013  Score=60.72  Aligned_cols=36  Identities=17%  Similarity=0.202  Sum_probs=30.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE  305 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~  305 (403)
                      +.+|-++|.|||||||+|+.+.+ ..   +.+++.|.+..
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G---~~vidaD~v~r   37 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LG---FPVIDADDVAR   37 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cC---CeEEEccHHHH
Confidence            56899999999999999999988 44   67888887644

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.48  E-value=0.00016  Score=62.53  Aligned_cols=24  Identities=17%  Similarity=0.444  Sum_probs=21.6

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +|+++|++||||||+++.+++.++
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCC
Confidence            478899999999999999998865

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=97.47  E-value=0.001  Score=61.58  Aligned_cols=39  Identities=18%  Similarity=0.114  Sum_probs=32.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      +..|.++|.+||||||+++.+.+.+.   +.+++.|.+..++
T Consensus         6 ~~~IglTG~iGsGKStv~~~l~~~lg---~~vidaD~i~~~l   44 (204)
T PRK14733          6 TYPIGITGGIASGKSTATRILKEKLN---LNVVCADTISREI   44 (204)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHcC---CeEEeccHHHHHH
Confidence            56899999999999999999998765   5678888775555

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=97.46  E-value=0.00061  Score=62.67  Aligned_cols=36  Identities=11%  Similarity=0.155  Sum_probs=28.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      +|.++|.+||||||+++.+.. ..   ..+++.|.+-.++
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~g---~~~i~~D~i~~~~   36 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-LG---AFGISADRLAKRY   36 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-CC---CEEEecchHHHHH
Confidence            478999999999999998865 33   6788889765444

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=97.45  E-value=0.0013  Score=61.06  Aligned_cols=39  Identities=15%  Similarity=0.083  Sum_probs=31.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      .+.+|.++|.+||||||+++.+.. +.   +.+++.|.+..++
T Consensus         4 ~~~~igitG~igsGKSt~~~~l~~-~g---~~v~d~D~i~~~~   42 (208)
T PRK14731          4 LPFLVGVTGGIGSGKSTVCRFLAE-MG---CELFEADRVAKEL   42 (208)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-CC---CeEEeccHHHHHH
Confidence            356788999999999999999986 33   6788888664444

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=97.44  E-value=0.00079  Score=62.52  Aligned_cols=40  Identities=18%  Similarity=0.226  Sum_probs=34.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir  304 (403)
                      .+.+|-+.|.+||||||+|+++...++....++|+.|..-
T Consensus         7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YY   46 (218)
T COG0572           7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYY   46 (218)
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccc
Confidence            4688999999999999999999999986556788888753

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=97.43  E-value=0.0005  Score=65.34  Aligned_cols=39  Identities=18%  Similarity=0.336  Sum_probs=31.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK  308 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~  308 (403)
                      .+|-++|..||||||+++.|.+.+.   +.+|+.|.+-.++.
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G---~~viDaD~iar~l~   40 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHH---IEVIDADLVVRELQ   40 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC---CeEEehHHHHHHHH
Confidence            4788999999999999999997654   67899998754443

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.40  E-value=0.00017  Score=54.75  Aligned_cols=31  Identities=26%  Similarity=0.412  Sum_probs=24.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEe
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILL  298 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~l  298 (403)
                      +|+++|.|||||||+++.+.+.+....+.++
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i   31 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVL   31 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence            4788999999999999999998522235555

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=97.34  E-value=0.0029  Score=57.15  Aligned_cols=116  Identities=20%  Similarity=0.143  Sum_probs=61.6

Q ss_pred             EccCCCChhHHHHHHHHhCCCccEE-Eecc--------HHHHHHhhcCCCcccCCChHHHHHHHHHHH--HHHHHHHHHH
Q 015668          272 VGLPASGKTTWAEKWVKDHPEKRYI-LLGT--------NLILEQMKVPGLLRKHNYSERFQCLMGRAN--AIFDVLLSRA  340 (403)
Q Consensus       272 ~GlPGSGKST~A~~l~~~~~~~~~v-~ls~--------D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~--~~~~~ll~~a  340 (403)
                      -|+.||||||.++.+.+.+....+. ++..        +.+|+-+. ..    ....+....+.-.+.  ..+...+..+
T Consensus         2 EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~-~~----~~~~~~~~~~l~~a~r~~~~~~~I~~~   76 (186)
T PF02223_consen    2 EGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLR-SE----SELSPEAEALLFAADRAWHLARVIRPA   76 (186)
T ss_dssp             EESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHH-TS----STCGHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHh-cc----cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999887755432 2211        12344332 11    111221111111111  1233455667


Q ss_pred             hcCCCeEEEeCCCCCHHHH--------HHHHHHHhc-C---CcEEEEEECCh-HHHHHHHHHhcc
Q 015668          341 SRTPRNFIIDQTNVFKSAR--------KRKLRLFVN-F---RKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R--------~~~~~~~~~-~---~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      +.+|..||+|--..+--+.        ..++..+.. .   .+=.+++++.+ ++..+|...|..
T Consensus        77 l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~  141 (186)
T PF02223_consen   77 LKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGE  141 (186)
T ss_dssp             HHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSS
T ss_pred             HcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCc
Confidence            7899999999621111100        112222221 1   23345677775 899999999986

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.33  E-value=0.00046  Score=57.98  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=28.2

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir  304 (403)
                      |++.|+||+||||+|+.+++.+.. .++.++...+.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~-~~~~i~~~~~~   35 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGF-PFIEIDGSELI   35 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTS-EEEEEETTHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhhccc-ccccccccccc
Confidence            689999999999999999999863 35667665544

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PLN02348 phosphoribulokinase

Probab=97.28  E-value=0.00058  Score=68.80  Aligned_cols=42  Identities=10%  Similarity=0.067  Sum_probs=33.3

Q ss_pred             CCCCceEEEEEccCCCChhHHHHHHHHhCCC-----------------ccEEEeccHHH
Q 015668          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPE-----------------KRYILLGTNLI  303 (403)
Q Consensus       262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~-----------------~~~v~ls~D~i  303 (403)
                      +...+.+|-+.|.+||||||+|++|.+.+..                 ....+|+.|+.
T Consensus        45 ~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDY  103 (395)
T PLN02348         45 ADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDY  103 (395)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccc
Confidence            3356789999999999999999999988752                 13567888864

>PRK05439 pantothenate kinase; Provisional

Probab=97.25  E-value=0.0016  Score=63.97  Aligned_cols=42  Identities=21%  Similarity=0.075  Sum_probs=33.1

Q ss_pred             CCCCceEEEEEccCCCChhHHHHHHHHhCCC----ccEEEeccHHH
Q 015668          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPE----KRYILLGTNLI  303 (403)
Q Consensus       262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~----~~~v~ls~D~i  303 (403)
                      ....+-+|.+.|.|||||||+|+.|...+..    ....+|+.|.+
T Consensus        82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF  127 (311)
T PRK05439         82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF  127 (311)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence            3456889999999999999999999875532    24678888865

>TIGR00017 cmk cytidylate kinase

Probab=97.23  E-value=0.0018  Score=60.58  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=29.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir  304 (403)
                      .+|.+.|++||||||+++.+++.++   +.+++++.+.
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~---~~~~~~g~~~   37 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLG---YAYLDSGAMY   37 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC---CceeeCchHH
Confidence            4788999999999999999999886   5667776543

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.17  E-value=0.0022  Score=57.31  Aligned_cols=99  Identities=23%  Similarity=0.228  Sum_probs=56.1

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHH---HHHHHHHHHHHHHHHHhcCC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQC---LMGRANAIFDVLLSRASRTP  344 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~---~~~~a~~~~~~ll~~al~~g  344 (403)
                      .|+++|.||.||||++++|. .+.   +.+++..++..+..   ....  +...++.   -.+.+    +..++..+ ..
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~-~lg---~~~i~l~el~~e~~---~~~~--~de~r~s~~vD~d~~----~~~le~~~-~~   67 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR-ELG---YKVIELNELAKENG---LYTE--YDELRKSVIVDVDKL----RKRLEELL-RE   67 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH-HhC---CceeeHHHHHHhcC---Ceec--cCCccceEEeeHHHH----HHHHHHHh-cc
Confidence            58899999999999999999 665   44443344444432   2111  1111111   11121    12332222 56


Q ss_pred             CeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECC-hHHHHHHHHHhc
Q 015668          345 RNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK-PEDLKIRSVKRF  391 (403)
Q Consensus       345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~-pe~~~~R~~~R~  391 (403)
                      .+.|+|. |+.        .++.  ..=.+|++.+ |+.+.+|++.|-
T Consensus        68 ~~~Ivd~-H~~--------hl~~--~~dlVvVLR~~p~~L~~RLk~RG  104 (180)
T COG1936          68 GSGIVDS-HLS--------HLLP--DCDLVVVLRADPEVLYERLKGRG  104 (180)
T ss_pred             CCeEeec-hhh--------hcCC--CCCEEEEEcCCHHHHHHHHHHcC
Confidence            7899995 331        1122  1234567777 589999999995

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.13  E-value=0.001  Score=59.38  Aligned_cols=36  Identities=33%  Similarity=0.442  Sum_probs=28.1

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI  303 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~i  303 (403)
                      +++++|+|||||||++..++..+.  ...+.+++.|..
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~   39 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY   39 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence            688999999999999998876643  234677888843

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK13976 thymidylate kinase; Provisional

Probab=97.10  E-value=0.0055  Score=56.93  Aligned_cols=117  Identities=19%  Similarity=0.105  Sum_probs=64.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCc-c--EEEecc--------HHHHHHhhcCCCcccCCChHHHHH---HHHHHHHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEK-R--YILLGT--------NLILEQMKVPGLLRKHNYSERFQC---LMGRANAIF  333 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~-~--~v~ls~--------D~ir~~l~~~g~~~~~~~~~~~~~---~~~~a~~~~  333 (403)
                      +|++-|+-||||||.++.|.+.+... +  -+++..        ..+|+.+.  +.  . ...+.-+.   +..++. .+
T Consensus         2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~--~~--~-~~~~~~~~llf~a~R~~-~~   75 (209)
T PRK13976          2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLL--SL--K-NLDKISELLLFIAMRRE-HF   75 (209)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHc--CC--c-CCCHHHHHHHHHHHHHH-HH
Confidence            68899999999999999998877642 1  122221        23444432  11  0 01111111   111221 23


Q ss_pred             HHHHHHHhcCCCeEEEeCCCCCHHHH--------HHHHHHHhcC----CcEEEEEECCh-HHHHHHHHHh
Q 015668          334 DVLLSRASRTPRNFIIDQTNVFKSAR--------KRKLRLFVNF----RKIAVVVFPKP-EDLKIRSVKR  390 (403)
Q Consensus       334 ~~ll~~al~~g~~vIlD~Tn~~~~~R--------~~~~~~~~~~----~~~~vv~l~~p-e~~~~R~~~R  390 (403)
                      ...+.-++.+|..||.|--..+--+.        ..|+..+...    .+=.+++++.| ++.++|..+|
T Consensus        76 ~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~  145 (209)
T PRK13976         76 VKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKN  145 (209)
T ss_pred             HHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhccc
Confidence            34566678899999999733221111        1233333321    24466788887 8888887544

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=97.10  E-value=0.0014  Score=57.94  Aligned_cols=121  Identities=17%  Similarity=0.183  Sum_probs=65.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCcc-E----EEeccHHHHHHhhcCCCccc-CCChHHHHHHHHHHH----HH--
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKR-Y----ILLGTNLILEQMKVPGLLRK-HNYSERFQCLMGRAN----AI--  332 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~-~----v~ls~D~ir~~l~~~g~~~~-~~~~~~~~~~~~~a~----~~--  332 (403)
                      ...+|+++|++||||-|+.......+.... .    .+|+.+.      ..|..+. ......|.....+-.    +.  
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa------~ag~EdH~avs~~eF~~~a~~g~FAlsWqAh   77 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPA------DAGGEDHDALSEAEFNTRAGQGAFALSWQAH   77 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccC------CCCcccccccCHHHHHHHhhcCceeEEehhc
Confidence            358999999999999999777766665431 1    2232221      0121000 000111211111100    00  


Q ss_pred             -----HHHHHHHHhcCCCeEEEeCC-CCCHHHHHHHHHHHhcCCcEEEEEECC-hHHHHHHHHHhccccCccc
Q 015668          333 -----FDVLLSRASRTPRNFIIDQT-NVFKSARKRKLRLFVNFRKIAVVVFPK-PEDLKIRSVKRFKEMGKEQ  398 (403)
Q Consensus       333 -----~~~ll~~al~~g~~vIlD~T-n~~~~~R~~~~~~~~~~~~~~vv~l~~-pe~~~~R~~~R~~~~g~~V  398 (403)
                           +-.-++.-+.+|..||++.+ -+.+..|++       |....+|++.. |+.+.+|+.+|-++--.+|
T Consensus        78 GL~Ygip~eId~wl~~G~vvl~NgSRa~Lp~arrr-------y~~Llvv~ita~p~VLaqRL~~RGREs~eeI  143 (192)
T COG3709          78 GLSYGIPAEIDLWLAAGDVVLVNGSRAVLPQARRR-------YPQLLVVCITASPEVLAQRLAERGRESREEI  143 (192)
T ss_pred             CccccCchhHHHHHhCCCEEEEeccHhhhHHHHHh-------hhcceeEEEecCHHHHHHHHHHhccCCHHHH
Confidence                 00123334688999998764 222333332       44677888877 4899999999976544443

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.10  E-value=0.0017  Score=65.62  Aligned_cols=41  Identities=39%  Similarity=0.462  Sum_probs=32.8

Q ss_pred             CCCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHH
Q 015668          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLI  303 (403)
Q Consensus       263 ~~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~i  303 (403)
                      ...|.+|||+||-||||||.+.+|+..+..  +...+++.|..
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~  139 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTY  139 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccC
Confidence            345899999999999999999888876553  34678888864

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=97.09  E-value=0.00039  Score=62.92  Aligned_cols=38  Identities=24%  Similarity=0.249  Sum_probs=31.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILE  305 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~  305 (403)
                      +|.++|.|||||||+|+.++..+..  ....+|+.|.+..
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~   40 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV   40 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence            5789999999999999999988642  2367899998654

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.09  E-value=0.0012  Score=69.55  Aligned_cols=38  Identities=18%  Similarity=0.277  Sum_probs=31.3

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i  303 (403)
                      ..+.+|.++|++||||||+|+.++..++.  ..+|+.|..
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~LaglLp~--vgvIsmDdy  100 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLNFMPS--IAVISMDNY  100 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHhhCCC--cEEEEEcce
Confidence            35789999999999999999999988864  456666764

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.08  E-value=0.00042  Score=63.36  Aligned_cols=37  Identities=22%  Similarity=0.359  Sum_probs=30.9

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir  304 (403)
                      +|.++|++||||||+++.+...+......+++.|.+.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~   37 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY   37 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence            5789999999999999999988754457788888754

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=97.08  E-value=0.0024  Score=65.02  Aligned_cols=38  Identities=13%  Similarity=0.216  Sum_probs=31.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK  308 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~  308 (403)
                      ..|.++|.+||||||+++.|.+ +.   +.+|+.|.+-.++.
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~G---~~vidaD~i~~~l~   39 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-LG---AVVVDADVLAREVV   39 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CC---CeEEehHHHHHHHh
Confidence            4689999999999999999986 43   78899998766543

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=97.06  E-value=0.0034  Score=58.92  Aligned_cols=114  Identities=21%  Similarity=0.273  Sum_probs=69.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc-HHHHHHhhcCCCcccCCChHHHHHHHHHHH----HHHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQMKVPGLLRKHNYSERFQCLMGRAN----AIFDVLLSRA  340 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~-D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~----~~~~~ll~~a  340 (403)
                      ..-.+++|.|||||+|+|..+.+.+.   ..+|++ |.+|+.+. ++..    .+...+..+++-+    .+.-.+++..
T Consensus        15 ~~~~v~~G~pg~gkgt~a~~l~~~~~---~~hl~tGdllr~~ia-~~te----lg~~~~~~~~~g~lvpDeiv~~~l~~~   86 (235)
T KOG3078|consen   15 GVRAVLLGAPGSGKGTQAPRLTKNFG---VIHISTGDLLRDEIA-SGTE----LGKEAKEAIDKGKLVPDEVVVRLLEKR   86 (235)
T ss_pred             ceEEEEEeCCCCCCCccCHHHHHhcC---CccchhHHHHHHHHh-ccCc----HHHHHHHHHHhcCcCcHHHHHHHHHhh
Confidence            45567899999999999999999987   566776 44566543 4421    1222233333311    1122244444


Q ss_pred             hcCC---CeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668          341 SRTP---RNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       341 l~~g---~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      +...   +.+|+|.---+......    +.+.+  .-.++.+..| +.+.+|+..|-
T Consensus        87 l~~~~~~~~~ildg~Prt~~qa~~----l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~  139 (235)
T KOG3078|consen   87 LENPRCQKGFILDGFPRTVQQAEE----LLDRIAQIDLVINLKVPEEVLVDRITGRR  139 (235)
T ss_pred             ccccccccccccCCCCcchHHHHH----HHHccCCcceEEEecCCHHHHHHHHhccc
Confidence            4444   78999984333221221    33333  4467789998 78999999883

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.06  E-value=0.001  Score=62.30  Aligned_cols=74  Identities=16%  Similarity=0.216  Sum_probs=44.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcc----cCCChHHHHHHHHHHHHHHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLR----KHNYSERFQCLMGRANAIFDVLLSRAS  341 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~----~~~~~~~~~~~~~~a~~~~~~ll~~al  341 (403)
                      +..++++|.||+||||+|+.+..     ..++++.|.....+.  |...    .......|+...+...     .++..+
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~~-----~~~~~~~d~~~~~l~--g~~~~~v~~~d~~~~~~~~~d~l~-----~~~~~~   79 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLPG-----KTLVLSFDMSSKVLI--GDENVDIADHDDMPPIQAMVEFYV-----MQNIQA   79 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcCC-----CCEEEeccccchhcc--CCCCCceeecCCCCCHHHHHHHHH-----HHHhcc
Confidence            57799999999999999999842     257888887544432  2110    0011223444444432     222334


Q ss_pred             cCCCeEEEeC
Q 015668          342 RTPRNFIIDQ  351 (403)
Q Consensus       342 ~~g~~vIlD~  351 (403)
                      ..=++||||.
T Consensus        80 ~~ydtVVIDs   89 (220)
T TIGR01618        80 VKYDNIVIDN   89 (220)
T ss_pred             ccCCEEEEec
Confidence            5566888886

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=97.05  E-value=0.0051  Score=55.81  Aligned_cols=37  Identities=16%  Similarity=0.258  Sum_probs=30.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK  308 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~  308 (403)
                      +|-++|..||||||+++.+.+ +.   +.+++.|.+-.++.
T Consensus         2 iIglTG~igsGKStv~~~l~~-~G---~~vidaD~i~~~l~   38 (180)
T PF01121_consen    2 IIGLTGGIGSGKSTVSKILAE-LG---FPVIDADEIAHELY   38 (180)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH-TT----EEEEHHHHHHHCT
T ss_pred             EEEEECCCcCCHHHHHHHHHH-CC---CCEECccHHHHHHh
Confidence            688999999999999999987 44   88999997655554

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>TIGR00959 ffh signal recognition particle protein

Probab=97.05  E-value=0.0025  Score=65.38  Aligned_cols=41  Identities=37%  Similarity=0.415  Sum_probs=32.6

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLIL  304 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D~ir  304 (403)
                      ..+.+++++|+|||||||.+.+++..+.   ++.+.+++.|..|
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R  140 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR  140 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence            3479999999999999999988877642   3457889999543

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]

Probab=97.04  E-value=0.00028  Score=72.92  Aligned_cols=52  Identities=31%  Similarity=0.468  Sum_probs=41.6

Q ss_pred             eEec-CCceeeCCC-cccCCCCCCCCCEEEEEEecCCCCCceEEEEeCccccccccc
Q 015668          137 GFGG-TGKFSHGGN-FLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQ  191 (403)
Q Consensus       137 gy~~-~G~~~~~~~-~~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg~af~  191 (403)
                      +|++ +|..+..+. ...||+.|++||+|||.+|...   +.-+|++||..+|++|-
T Consensus         2 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~i~~~~~~~~---~~~~~~~~~~~~gi~f~   55 (469)
T KOG1477|consen    2 GYHGDDGNFFLKSGDGQLYGPVFTTGDVIPCEVNTIN---GSDFFTKNGPDMGIAFY   55 (469)
T ss_pred             CCcccchhhhhhcccccccCCcCCccccccceEeccC---CceeEEEEcCCcceeee
Confidence            4433 444443332 3589999999999999999998   79999999999999986

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.04  E-value=0.0023  Score=57.53  Aligned_cols=32  Identities=22%  Similarity=0.423  Sum_probs=26.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      +|+++|.|||||||+|.+++..++. .++.|.+
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~~-~~~~iat   34 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSGL-QVLYIAT   34 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcCC-CcEeCcC
Confidence            6899999999999999999988643 3556655

>PRK10867 signal recognition particle protein; Provisional

Probab=97.04  E-value=0.002  Score=66.25  Aligned_cols=41  Identities=39%  Similarity=0.484  Sum_probs=31.6

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLIL  304 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D~ir  304 (403)
                      ..+.+|+|+|+|||||||++.+++..+.   .+.+.+++.|..|
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R  141 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR  141 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence            3479999999999999998888876442   2347788889543

>PTZ00301 uridine kinase; Provisional

Probab=97.03  E-value=0.00067  Score=63.09  Aligned_cols=38  Identities=18%  Similarity=0.319  Sum_probs=29.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLI  303 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~i  303 (403)
                      |.+|.+.|.|||||||+|+++.+.+.    .....+++.|..
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y   44 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY   44 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            67899999999999999998876542    122457788864

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.02  E-value=0.0046  Score=56.85  Aligned_cols=37  Identities=27%  Similarity=0.319  Sum_probs=28.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL  302 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~  302 (403)
                      |.+|+|+|++|+||||-+.+|+..+.  .+....++.|.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~   39 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADT   39 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEST
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCC
Confidence            57999999999999999888875432  34567788885

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK14974 cell division protein FtsY; Provisional

Probab=96.96  E-value=0.0022  Score=63.84  Aligned_cols=39  Identities=21%  Similarity=0.222  Sum_probs=29.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLI  303 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~i  303 (403)
                      .+.+|+++|+||+||||.+.+++..+..  ....+++.|..
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~  179 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF  179 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence            4789999999999999987777655432  23566888843

>PRK07429 phosphoribulokinase; Provisional

Probab=96.96  E-value=0.0061  Score=60.51  Aligned_cols=40  Identities=18%  Similarity=0.119  Sum_probs=31.9

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i  303 (403)
                      ..+.+|-++|.+||||||+++.++..++.....++..|.+
T Consensus         6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~   45 (327)
T PRK07429          6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY   45 (327)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc
Confidence            3568999999999999999999998876444556666764

>PRK09087 hypothetical protein; Validated

Probab=96.94  E-value=0.0029  Score=59.47  Aligned_cols=125  Identities=18%  Similarity=0.169  Sum_probs=62.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhc---CCC--cccCCChHHHHHHHHHHHHHHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV---PGL--LRKHNYSERFQCLMGRANAIFDVLLSRAS  341 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~---~g~--~~~~~~~~~~~~~~~~a~~~~~~ll~~al  341 (403)
                      ..++++|.+||||||+++.+++...   ...++.+.+..++..   .+.  .++-.... ..      +..+..++..+.
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~-~~------~~~lf~l~n~~~  114 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSD---ALLIHPNEIGSDAANAAAEGPVLIEDIDAGG-FD------ETGLFHLINSVR  114 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcC---CEEecHHHcchHHHHhhhcCeEEEECCCCCC-CC------HHHHHHHHHHHH
Confidence            4578999999999999999988764   456666432221110   010  01100000 00      112444666666


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHhc-CCcEEEEEECCh--HHHHHHHHHhccccCccccccc
Q 015668          342 RTPRNFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP--EDLKIRSVKRFKEMGKEQIMFC  402 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~~~~vv~l~~p--e~~~~R~~~R~~~~g~~Vp~~~  402 (403)
                      .+|+.+|+-++...+.... ....++. ...-.++-++.|  ++..+-.+++....+-.+++++
T Consensus       115 ~~g~~ilits~~~p~~~~~-~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev  177 (226)
T PRK09087        115 QAGTSLLMTSRLWPSSWNV-KLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHV  177 (226)
T ss_pred             hCCCeEEEECCCChHHhcc-ccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence            7888888877644332111 1111221 111245566665  3343334433333455566543

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=96.93  E-value=0.00086  Score=61.28  Aligned_cols=35  Identities=26%  Similarity=0.335  Sum_probs=28.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCcc------EEEeccHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKR------YILLGTNL  302 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~------~v~ls~D~  302 (403)
                      ||.++|+|||||||+|++|...+....      ..+++.|.
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~   41 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDD   41 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGG
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecc
Confidence            688999999999999999999887432      45666664

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.92  E-value=0.0026  Score=56.24  Aligned_cols=21  Identities=33%  Similarity=0.544  Sum_probs=17.9

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.||+||||+++.|++.
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            689999999999999999988

>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]

Probab=96.91  E-value=0.0031  Score=62.05  Aligned_cols=116  Identities=18%  Similarity=0.113  Sum_probs=72.9

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCcc--EEEeccHHHHHHhhc-CCCcccCCCh-HHHHHHHHHHHHHHHHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLGTNLILEQMKV-PGLLRKHNYS-ERFQCLMGRANAIFDVLLSR  339 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~--~v~ls~D~ir~~l~~-~g~~~~~~~~-~~~~~~~~~a~~~~~~ll~~  339 (403)
                      .....|++.||+|+||||+.-.|.+.+...+  ...+..|.||.-|.. -|      |+ .+.++.+.++.+    ....
T Consensus        48 frgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlg------fs~edreenirriae----vakl  117 (627)
T KOG4238|consen   48 FRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLG------FSPEDREENIRRIAE----VAKL  117 (627)
T ss_pred             ccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccC------CCchhHHHHHHHHHH----HHHH
Confidence            3456789999999999999877766554211  345777888876632 12      22 233444444332    2223


Q ss_pred             HhcCCCeEEEeCCCCCHHHHHHHHHHHhc-CC-cEEEEEECCh-HHHHHHHHHh
Q 015668          340 ASRTPRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIRSVKR  390 (403)
Q Consensus       340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~-~~~vv~l~~p-e~~~~R~~~R  390 (403)
                      ....|-..|-.....+...|... +.+-+ .+ ++.-|++++| +.|.+|..+.
T Consensus       118 fadaglvcitsfispf~~dr~~a-rkihe~~~l~f~ev~v~a~l~vceqrd~k~  170 (627)
T KOG4238|consen  118 FADAGLVCITSFISPFAKDRENA-RKIHESAGLPFFEVFVDAPLNVCEQRDVKG  170 (627)
T ss_pred             HhcCCceeeehhcChhhhhhhhh-hhhhcccCCceEEEEecCchhhhhhcChHH
Confidence            35778777777777777777542 22222 23 6777899998 8999998764

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.91  E-value=0.0011  Score=55.15  Aligned_cols=38  Identities=34%  Similarity=0.458  Sum_probs=31.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLI  303 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~i  303 (403)
                      ...++++|+||+||||+++.++..+...  ..+.++.+..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~   41 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI   41 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence            3578999999999999999999988865  3677766643

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.90  E-value=0.0061  Score=62.77  Aligned_cols=40  Identities=30%  Similarity=0.351  Sum_probs=32.0

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLI  303 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~i  303 (403)
                      ..+.+|+|+|+||+||||.+.+++..+..  ....+++.|..
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~  134 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY  134 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence            35899999999999999999999876643  24677888854

>PHA00729 NTP-binding motif containing protein

Probab=96.90  E-value=0.0096  Score=55.84  Aligned_cols=25  Identities=36%  Similarity=0.420  Sum_probs=22.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..-|+++|.||+||||+|..++..+
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~l   41 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARDV   41 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999999875

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=96.88  E-value=0.017  Score=53.69  Aligned_cols=126  Identities=19%  Similarity=0.134  Sum_probs=70.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccE-EEecc--------HHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRY-ILLGT--------NLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVL  336 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~-v~ls~--------D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~l  336 (403)
                      ..+|.+-|+=||||||.++.+.+.+...++ +++..        ..+|+.+. .+...........-.+.+++ +.+.+.
T Consensus         3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll-~~~~~~~~~~e~lLfaadR~-~h~~~~   80 (208)
T COG0125           3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLL-NGEEKLSPKAEALLFAADRA-QHLEEV   80 (208)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHc-CCccCCCHHHHHHHHHHHHH-HHHHHH
Confidence            468999999999999999999887765432 22221        13444432 22100001111111111222 124456


Q ss_pred             HHHHhcCCCeEEEeCCCCCHH-HH-------HHHHHHHhcC-----CcEEEEEECCh-HHHHHHHHHhccc
Q 015668          337 LSRASRTPRNFIIDQTNVFKS-AR-------KRKLRLFVNF-----RKIAVVVFPKP-EDLKIRSVKRFKE  393 (403)
Q Consensus       337 l~~al~~g~~vIlD~Tn~~~~-~R-------~~~~~~~~~~-----~~~~vv~l~~p-e~~~~R~~~R~~~  393 (403)
                      +.-++.+|+.||.|--..+.- ++       ..++..+.++     .+-..++++.| ++.++|..+|...
T Consensus        81 i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~  151 (208)
T COG0125          81 IKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGEL  151 (208)
T ss_pred             HHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence            667789999999996322221 12       1233322222     13456788886 8999999998643

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.86  E-value=0.015  Score=48.69  Aligned_cols=25  Identities=28%  Similarity=0.448  Sum_probs=22.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ...+++.|.||+||||+++.++..+
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4678899999999999999999876

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.84  E-value=0.0026  Score=65.20  Aligned_cols=41  Identities=29%  Similarity=0.269  Sum_probs=32.7

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLIL  304 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir  304 (403)
                      ..+.+|+|+|++||||||.+.+|+..+..  +...+++.|..|
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R  140 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR  140 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence            44799999999999999999999865532  346788888644

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=96.84  E-value=0.0022  Score=67.09  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=33.2

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~  306 (403)
                      .+.+|.+.|++||||||+|+.+++.++   +.++++|.+...
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~---~~~~d~g~~YR~  321 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLG---LLYLDTGAMYRA  321 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC---CeEecCCceehH
Confidence            357899999999999999999999996   788988765443

>PF13173 AAA_14: AAA domain

Probab=96.81  E-value=0.0092  Score=50.63  Aligned_cols=94  Identities=14%  Similarity=0.232  Sum_probs=55.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC-CccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~  345 (403)
                      .++++.|+.++||||+++++++.+. .+.++.++.|+.+..-.              . ..+    ....+++.......
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~--------------~-~~~----~~~~~~~~~~~~~~   63 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRL--------------A-DPD----LLEYFLELIKPGKK   63 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHH--------------h-hhh----hHHHHHHhhccCCc
Confidence            6889999999999999999998764 23467776665433100              0 000    11112222223566


Q ss_pred             eEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh
Q 015668          346 NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP  380 (403)
Q Consensus       346 ~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p  380 (403)
                      .++||-....+.... .++.+.+.. ...+++.-+.
T Consensus        64 ~i~iDEiq~~~~~~~-~lk~l~d~~~~~~ii~tgS~   98 (128)
T PF13173_consen   64 YIFIDEIQYLPDWED-ALKFLVDNGPNIKIILTGSS   98 (128)
T ss_pred             EEEEehhhhhccHHH-HHHHHHHhccCceEEEEccc
Confidence            889998777665444 455555544 4555555443

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=96.80  E-value=0.0068  Score=58.54  Aligned_cols=98  Identities=15%  Similarity=0.131  Sum_probs=56.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~  345 (403)
                      +++|+++|++||||||-.+.|. ++.   |..+  |.+=-              .-....++.+.+    -  .....+-
T Consensus         1 m~~vIiTGlSGaGKs~Al~~lE-D~G---y~cv--DNlP~--------------~Ll~~l~~~~~~----~--~~~~~~~   54 (284)
T PF03668_consen    1 MELVIITGLSGAGKSTALRALE-DLG---YYCV--DNLPP--------------SLLPQLIELLAQ----S--NSKIEKV   54 (284)
T ss_pred             CeEEEEeCCCcCCHHHHHHHHH-hcC---eeEE--cCCcH--------------HHHHHHHHHHHh----c--CCCCceE
Confidence            4789999999999999777764 443   6666  43110              001111111110    0  0012455


Q ss_pred             eEEEeCCCCCH-HHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHH
Q 015668          346 NFIIDQTNVFK-SARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVK  389 (403)
Q Consensus       346 ~vIlD~Tn~~~-~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~  389 (403)
                      -+++|.-+..- ..-...+..+.+.+ .+.++|+++. +++++|-++
T Consensus        55 Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~e  101 (284)
T PF03668_consen   55 AIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSE  101 (284)
T ss_pred             EEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHh
Confidence            78889855422 22223344444445 8899999997 788888765

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.74  E-value=0.012  Score=58.82  Aligned_cols=26  Identities=31%  Similarity=0.434  Sum_probs=23.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      =+-|+|+|+||+|||-+|+.++.+..
T Consensus       245 WkgvLm~GPPGTGKTlLAKAvATEc~  270 (491)
T KOG0738|consen  245 WKGVLMVGPPGTGKTLLAKAVATECG  270 (491)
T ss_pred             cceeeeeCCCCCcHHHHHHHHHHhhc
Confidence            46789999999999999999998876

>CHL00181 cbbX CbbX; Provisional

Probab=96.73  E-value=0.016  Score=56.56  Aligned_cols=40  Identities=23%  Similarity=0.188  Sum_probs=28.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC------CccEEEeccHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP------EKRYILLGTNLILE  305 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~------~~~~v~ls~D~ir~  305 (403)
                      ..-+++.|+||+||||+|+.+++.+.      ...++.++.+.+..
T Consensus        59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~  104 (287)
T CHL00181         59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVG  104 (287)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHH
Confidence            34578899999999999999977542      12366777666544

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.72  E-value=0.0055  Score=62.50  Aligned_cols=45  Identities=16%  Similarity=0.180  Sum_probs=35.1

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK  308 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~  308 (403)
                      ..+..|+++|.+||||||+++.|++.++...+..++.+.+.+++.
T Consensus       217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~~~~~  261 (399)
T PRK08099        217 FFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFSHLG  261 (399)
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHHHhhc
Confidence            457889999999999999999999986643345577776666543

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=96.72  E-value=0.0092  Score=57.16  Aligned_cols=25  Identities=36%  Similarity=0.310  Sum_probs=21.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..-+++.|+||+||||+|+.+++.+
T Consensus        42 ~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        42 VLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHH
Confidence            3457889999999999999998753

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=96.72  E-value=0.021  Score=54.64  Aligned_cols=28  Identities=25%  Similarity=0.299  Sum_probs=25.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      ..+||.+-|.-|||||++|++|++++.-
T Consensus        70 nSkvI~VeGnI~sGK~klAKelAe~Lgf   97 (393)
T KOG3877|consen   70 NSKVIVVEGNIGSGKTKLAKELAEQLGF   97 (393)
T ss_pred             cceEEEEeCCcccCchhHHHHHHHHhCC
Confidence            4689999999999999999999999873

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=96.69  E-value=0.0035  Score=57.25  Aligned_cols=36  Identities=25%  Similarity=0.273  Sum_probs=30.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir  304 (403)
                      -+|-+.|...|||||+|+.+.+-++.  ..+|+.|++.
T Consensus         5 ~ivgiSG~TnsGKTTLak~l~~~f~~--~~lIhqDDFy   40 (225)
T KOG3308|consen    5 LIVGISGCTNSGKTTLAKSLHRFFPG--CSLIHQDDFY   40 (225)
T ss_pred             EEEEeecccCCCHhHHHHHHHHHccC--Ceeecccccc
Confidence            46677899999999999999999986  4578888754

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=96.66  E-value=0.025  Score=51.82  Aligned_cols=37  Identities=14%  Similarity=0.241  Sum_probs=28.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      .+|-++|--||||||.++.+.+ +.   .-+|+.|.+-.++
T Consensus         2 ~iVGLTGgiatGKStVs~~f~~-~G---~~vIDaD~vaR~v   38 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFKA-LG---IPVIDADVVAREV   38 (225)
T ss_pred             eEEEeecccccChHHHHHHHHH-cC---CcEecHHHHHHHH
Confidence            4778899999999999999984 33   6788888764444

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.64  E-value=0.0022  Score=63.43  Aligned_cols=40  Identities=28%  Similarity=0.332  Sum_probs=31.7

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLI  303 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~i  303 (403)
                      ..+.+|+++|+|||||||.+.+++..+..  +...+++.|..
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~  153 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF  153 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence            45799999999999999999999876542  34677877853

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.58  E-value=0.042  Score=52.32  Aligned_cols=27  Identities=22%  Similarity=0.314  Sum_probs=24.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      ..+++++|.||+||||+++.+...+..
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~   69 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLDQ   69 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence            458899999999999999999988763

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.56  E-value=0.0098  Score=49.95  Aligned_cols=26  Identities=27%  Similarity=0.519  Sum_probs=19.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      +..+++++|.||+|||++++++.+.+
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999999875

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=96.53  E-value=0.014  Score=62.31  Aligned_cols=40  Identities=15%  Similarity=0.189  Sum_probs=30.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHhC----CCccEEEeccHHHHHHh
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILEQM  307 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~----~~~~~v~ls~D~ir~~l  307 (403)
                      .++|+|.+|+|||++++.++.+.    +...++.++.+++..++
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el  359 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF  359 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence            37899999999999999887754    23456788887765444

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=96.52  E-value=0.053  Score=48.33  Aligned_cols=117  Identities=15%  Similarity=0.148  Sum_probs=62.9

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccHHH--------HHHhhc-CCCcccCCCh-HHHHHHHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLI--------LEQMKV-PGLLRKHNYS-ERFQCLMGRANAIF  333 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D~i--------r~~l~~-~g~~~~~~~~-~~~~~~~~~a~~~~  333 (403)
                      ..+++.++|++||||||+.+.++..++. .+-+.++...+        +..+.. +..  ...+. ..++.+...-++..
T Consensus        27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~--~~~~~~t~~e~lLS~G~~~r  104 (171)
T cd03228          27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQD--PFLFSGTIRENILSGGQRQR  104 (171)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCC--chhccchHHHHhhCHHHHHH
Confidence            3578999999999999999999876542 23444543221        221111 110  00011 11111111111111


Q ss_pred             HHHHHHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC-cEEEEEECC-hHHH
Q 015668          334 DVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR-KIAVVVFPK-PEDL  383 (403)
Q Consensus       334 ~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~-pe~~  383 (403)
                      -.+....+.+.+.+|+|-  ..+....+..+++.+.+.. ...++++.. ++++
T Consensus       105 l~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~  158 (171)
T cd03228         105 IAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI  158 (171)
T ss_pred             HHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence            122233357888999998  5677778887777777654 445555443 3444

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.50  E-value=0.011  Score=55.27  Aligned_cols=40  Identities=18%  Similarity=0.158  Sum_probs=29.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC--CCccEEEeccHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTNLILE  305 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~ls~D~ir~  305 (403)
                      ...++++|.||+||||+|+.++.+.  ....++.++......
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~   83 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL   83 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH
Confidence            4678999999999999999998764  222367776665433

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=96.49  E-value=0.0029  Score=61.74  Aligned_cols=40  Identities=23%  Similarity=0.125  Sum_probs=30.4

Q ss_pred             CCCceEEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHH
Q 015668          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNL  302 (403)
Q Consensus       263 ~~~~~vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~  302 (403)
                      .+.+.+|.++|.+||||||+|+.+..-+.    .....+++.|.
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~  102 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG  102 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence            35688999999999999999987755442    22366788885

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.48  E-value=0.0071  Score=58.49  Aligned_cols=39  Identities=26%  Similarity=0.349  Sum_probs=30.7

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNL  302 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~  302 (403)
                      ..+.+|+++|+||+||||.+.+++..+..  +...+++.|.
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~  110 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT  110 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence            45799999999999999999888765543  2466788784

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.46  E-value=0.012  Score=55.65  Aligned_cols=36  Identities=3%  Similarity=0.006  Sum_probs=25.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL  302 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~  302 (403)
                      ..++++|+||+||||+++.++.+..  ......++.+.
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            4688999999999999988776432  12244555554

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=96.46  E-value=0.012  Score=56.55  Aligned_cols=32  Identities=22%  Similarity=0.283  Sum_probs=25.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls  299 (403)
                      .-|++.|.||+|||++|+.+++.+.. .++.++
T Consensus        22 ~~vLL~G~~GtGKT~lA~~la~~lg~-~~~~i~   53 (262)
T TIGR02640        22 YPVHLRGPAGTGKTTLAMHVARKRDR-PVMLIN   53 (262)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCC-CEEEEe
Confidence            45678999999999999999987643 355554

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=96.46  E-value=0.0023  Score=62.96  Aligned_cols=34  Identities=29%  Similarity=0.326  Sum_probs=30.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      +.+|+++|++||||||+|..|++.++   ..+||.|.
T Consensus         4 ~~~i~i~GptgsGKt~la~~la~~~~---~~iis~Ds   37 (307)
T PRK00091          4 PKVIVIVGPTASGKTALAIELAKRLN---GEIISADS   37 (307)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHhCC---CcEEeccc
Confidence            57999999999999999999999986   56788887

>PHA03132 thymidine kinase; Provisional

Probab=96.44  E-value=0.029  Score=59.43  Aligned_cols=25  Identities=20%  Similarity=0.175  Sum_probs=23.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..+|.+-|.-||||||+++.|.+.+
T Consensus       257 ~~fIv~EGidGsGKTTlik~L~e~l  281 (580)
T PHA03132        257 ACFLFLEGVMGVGKTTLLNHMRGIL  281 (580)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHh
Confidence            6788899999999999999999887

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=96.42  E-value=0.032  Score=57.76  Aligned_cols=41  Identities=10%  Similarity=0.096  Sum_probs=29.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLILEQM  307 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~ir~~l  307 (403)
                      .-+++.|.||+|||++++.++.++.    ...++.++.+.+..++
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~  193 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF  193 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence            3478999999999999998887642    3346677777655443

>PF13245 AAA_19: Part of AAA domain

Probab=96.38  E-value=0.0056  Score=47.46  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=17.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ..++++.|+|||||||.+.....+
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~   33 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAE   33 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457788999999999665554433

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=96.36  E-value=0.021  Score=58.28  Aligned_cols=40  Identities=10%  Similarity=0.143  Sum_probs=29.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHHHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLILEQ  306 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~ir~~  306 (403)
                      ..+++.|.||+|||++++.++.++.    ...++.++.+.+..+
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~  180 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND  180 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH
Confidence            4578899999999999998876542    234677777765443

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK06620 hypothetical protein; Validated

Probab=96.35  E-value=0.0075  Score=56.20  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=21.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..++++|+||+||||+++.+++...
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~   69 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSN   69 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccC
Confidence            4689999999999999999887654

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.33  E-value=0.0025  Score=63.67  Aligned_cols=28  Identities=18%  Similarity=0.322  Sum_probs=24.9

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      ..++++|+|+|||||||+|+.|++.+..
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3588999999999999999999988763

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=96.29  E-value=0.067  Score=51.15  Aligned_cols=37  Identities=19%  Similarity=0.241  Sum_probs=27.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D  301 (403)
                      ..+++++.|.||+||||++.+++....   ....+.++.+
T Consensus        29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E   68 (271)
T cd01122          29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE   68 (271)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence            357999999999999999988865531   2345667764

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.28  E-value=0.029  Score=48.34  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=25.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTN  301 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D  301 (403)
                      +++++|.||+||||++..++.....  ...+.++.+
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e   36 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE   36 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence            4688999999999999999776542  235555554

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.28  E-value=0.067  Score=47.77  Aligned_cols=116  Identities=13%  Similarity=0.091  Sum_probs=61.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEeccHH-------HHHHhhc-CCCcccCCChHHHHHH-HHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNL-------ILEQMKV-PGLLRKHNYSERFQCL-MGRANAIFD  334 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls~D~-------ir~~l~~-~g~~~~~~~~~~~~~~-~~~a~~~~~  334 (403)
                      ..+++.++|.+||||||+.+.++..++ ..+-+.++...       ++..+.. +............+.+ ...-++..-
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv  104 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRL  104 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHH
Confidence            358899999999999999999987654 23334443221       1111110 1100000000111211 000011111


Q ss_pred             HHHHHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEECCh
Q 015668          335 VLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP  380 (403)
Q Consensus       335 ~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p  380 (403)
                      .+....+.+-+.+|+|-  +++....|+.+++.+.++.  ...++++...
T Consensus       105 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~  154 (173)
T cd03230         105 ALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI  154 (173)
T ss_pred             HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence            22233357888999998  6677788888888777653  2455555444

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=96.26  E-value=0.0075  Score=55.84  Aligned_cols=117  Identities=17%  Similarity=0.277  Sum_probs=58.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH--HHHhhc-CCCcccC-------CChHHH---HHHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI--LEQMKV-PGLLRKH-------NYSERF---QCLMGRANAI  332 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i--r~~l~~-~g~~~~~-------~~~~~~---~~~~~~a~~~  332 (403)
                      +.|++++|++|+|||.+|-.+++.++   +-+|+.|.+  -.++.+ +|.....       .|-...   +-.+ .+.+.
T Consensus         1 M~v~~i~GpT~tGKt~~ai~lA~~~g---~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i-~a~ea   76 (233)
T PF01745_consen    1 MKVYLIVGPTGTGKTALAIALAQKTG---APVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGII-NAEEA   76 (233)
T ss_dssp             -EEEEEE-STTSSHHHHHHHHHHHH-----EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHH
T ss_pred             CcEEEEECCCCCChhHHHHHHHHHhC---CCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCc-CHHHH
Confidence            36899999999999999999999987   667777853  233322 3321100       010000   0000 11122


Q ss_pred             HHHHHHHH--hcCCCeEEEeCCCCCHHHHHHHHHHHhc--C---C-cEEEEEECCh--HHHHHHHHHhcc
Q 015668          333 FDVLLSRA--SRTPRNFIIDQTNVFKSARKRKLRLFVN--F---R-KIAVVVFPKP--EDLKIRSVKRFK  392 (403)
Q Consensus       333 ~~~ll~~a--l~~g~~vIlD~Tn~~~~~R~~~~~~~~~--~---~-~~~vv~l~~p--e~~~~R~~~R~~  392 (403)
                      ...++...  ...+..+|+....++      ++..+.+  |   . +..+..+..+  +..+.|..+|.+
T Consensus        77 ~~~Li~~v~~~~~~~~~IlEGGSIS------Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~  140 (233)
T PF01745_consen   77 HERLISEVNSYSAHGGLILEGGSIS------LLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVR  140 (233)
T ss_dssp             HHHHHHHHHTTTTSSEEEEEE--HH------HHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCceEEeCchHH------HHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHH
Confidence            22333332  234889999998775      3333332  1   1 4556566554  678888888863

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=96.25  E-value=0.047  Score=56.49  Aligned_cols=40  Identities=18%  Similarity=0.264  Sum_probs=29.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHhC----CCccEEEeccHHHHHHh
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILEQM  307 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~----~~~~~v~ls~D~ir~~l  307 (403)
                      -++++|.||+|||++++.++.++    +...++.++.+++..++
T Consensus       132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~  175 (440)
T PRK14088        132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL  175 (440)
T ss_pred             eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence            48999999999999999887653    33346777777655444

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=96.25  E-value=0.049  Score=48.61  Aligned_cols=118  Identities=14%  Similarity=0.139  Sum_probs=62.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccH--------HHHHHhhcCCCcccCCCh-HHHHHHHHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTN--------LILEQMKVPGLLRKHNYS-ERFQCLMGRANAIFD  334 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D--------~ir~~l~~~g~~~~~~~~-~~~~~~~~~a~~~~~  334 (403)
                      ..+++.++|.+||||||+.+.++..++. .+.+.++..        .++..+....... ..+. ...+.+...-++..-
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~-~~~~~tv~~~lLS~G~~qrv  105 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDD-ELFSGSIAENILSGGQRQRL  105 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCC-ccccCcHHHHCcCHHHHHHH
Confidence            3579999999999999999999876542 234444331        1222221100000 0011 111111000111111


Q ss_pred             HHHHHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEECC-hHHH
Q 015668          335 VLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPK-PEDL  383 (403)
Q Consensus       335 ~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~-pe~~  383 (403)
                      .+....+.+.+.+|+|-  +.+.+..|+.+++.+.+..  ...++++.. .+++
T Consensus       106 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~  159 (173)
T cd03246         106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL  159 (173)
T ss_pred             HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence            22233457888999998  5778888887777776542  345555544 3433

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=96.23  E-value=0.0031  Score=61.31  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=28.3

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      +|+++|++|||||++|..+++.++   ..+||.|.
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~---~~iis~Ds   32 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLN---AEIISVDS   32 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCC---CcEEEech
Confidence            578999999999999999999987   46788886

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.23  E-value=0.029  Score=49.72  Aligned_cols=27  Identities=33%  Similarity=0.409  Sum_probs=22.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCc
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEK  293 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~  293 (403)
                      .=|+++|.||+||||++.+++..+..+
T Consensus         6 mki~ITG~PGvGKtTl~~ki~e~L~~~   32 (179)
T COG1618           6 MKIFITGRPGVGKTTLVLKIAEKLREK   32 (179)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence            447889999999999999998776643

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.22  E-value=0.038  Score=53.76  Aligned_cols=38  Identities=21%  Similarity=0.249  Sum_probs=26.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCC------CccEEEeccHHHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHP------EKRYILLGTNLILE  305 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~------~~~~v~ls~D~ir~  305 (403)
                      -+++.|+||+||||+|+.+++.+.      ...++.++.+++..
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~  103 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVG  103 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhH
Confidence            478899999999999976665432      11367777666544

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.21  E-value=0.03  Score=58.39  Aligned_cols=28  Identities=25%  Similarity=0.234  Sum_probs=24.1

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +-+..++++|+||+||||+|+.+++.+.
T Consensus        34 ~l~~~~Lf~GPpGtGKTTlA~~lA~~l~   61 (472)
T PRK14962         34 SISHAYIFAGPRGTGKTTVARILAKSLN   61 (472)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3356789999999999999999998765

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=96.17  E-value=0.023  Score=53.16  Aligned_cols=33  Identities=24%  Similarity=0.340  Sum_probs=24.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls  299 (403)
                      ..=+++.|+||.||||+|+-+++++.. .+..+|
T Consensus        50 l~h~lf~GPPG~GKTTLA~IIA~e~~~-~~~~~s   82 (233)
T PF05496_consen   50 LDHMLFYGPPGLGKTTLARIIANELGV-NFKITS   82 (233)
T ss_dssp             --EEEEESSTTSSHHHHHHHHHHHCT---EEEEE
T ss_pred             cceEEEECCCccchhHHHHHHHhccCC-CeEecc
Confidence            456889999999999999999999874 244443

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.13  E-value=0.005  Score=52.70  Aligned_cols=24  Identities=33%  Similarity=0.480  Sum_probs=22.0

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      |+|+|.||+|||++|+.+++.+..
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~   25 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGR   25 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhc
Confidence            789999999999999999998854

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.12  E-value=0.031  Score=54.98  Aligned_cols=43  Identities=28%  Similarity=0.271  Sum_probs=32.8

Q ss_pred             CCCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHH
Q 015668          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILE  305 (403)
Q Consensus       263 ~~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~  305 (403)
                      ...|-+|+++|.+|+||||-..+|+..+..  +..++.-.|.+|.
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRA  180 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRA  180 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHH
Confidence            345999999999999999988887765543  3466667787653

>PRK05642 DNA replication initiation factor; Validated

Probab=96.12  E-value=0.017  Score=54.46  Aligned_cols=38  Identities=11%  Similarity=0.145  Sum_probs=28.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLIL  304 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir  304 (403)
                      ..++++|.+|+|||++++.++.+..  ....+.++.+.+.
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~   85 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL   85 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH
Confidence            5678999999999999998875432  2346778777654

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.08  E-value=0.011  Score=53.67  Aligned_cols=126  Identities=17%  Similarity=0.054  Sum_probs=64.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccHHHHHHhhcCCC-cccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPGL-LRKHNYSERFQCLMGRANAIFDVLLSRASRT  343 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D~ir~~l~~~g~-~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~  343 (403)
                      ...++++|++||||||+.+.++...+. .+.+.+  ++.. ++..... .....+.........  ...+.+++..+++.
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~i--ed~~-E~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~lR~   99 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITI--EDTA-ELQLPHPNWVRLVTRPGNVEGSG--EVTMADLLRSALRM   99 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEE--CCcc-ccCCCCCCEEEEEEecCCCCCCC--ccCHHHHHHHHhcc
Confidence            578999999999999999999887663 234444  2111 1111100 000000000000000  00122344455565


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHhccccCcc
Q 015668          344 PRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRFKEMGKE  397 (403)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~pe~~~~R~~~R~~~~g~~  397 (403)
                      .-++|+=.---.++... .++.+..-+  -+.-+...++...++|........+..
T Consensus       100 ~pd~i~igEir~~ea~~-~~~a~~tGh~g~~~T~Ha~s~~~~~~Rl~~~~~~~~~~  154 (186)
T cd01130         100 RPDRIIVGEVRGGEALD-LLQAMNTGHPGGMTTIHANSAEEALTRLELLPSNVPLG  154 (186)
T ss_pred             CCCEEEEEccCcHHHHH-HHHHHhcCCCCceeeecCCCHHHHHHHHHHHHhhcCcc
Confidence            55555554334455443 454433212  234456666788899999887665554

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK06893 DNA replication initiation factor; Validated

Probab=96.07  E-value=0.022  Score=53.47  Aligned_cols=24  Identities=17%  Similarity=0.156  Sum_probs=21.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..++++|+||+|||++++.++.+.
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~   63 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHY   63 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999998764

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.05  E-value=0.1  Score=47.03  Aligned_cols=109  Identities=17%  Similarity=0.124  Sum_probs=57.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH---------------HHHHHhhcCCC-cccCCChHHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN---------------LILEQMKVPGL-LRKHNYSERFQCLMGR  328 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D---------------~ir~~l~~~g~-~~~~~~~~~~~~~~~~  328 (403)
                      ..+++.++|++||||||+.+.+.....   -+.++..               .+.+.+.+... .......-... ..++
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il~~~G---~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgG-q~qr   95 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGLYASG---KARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGG-ELQR   95 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhcCC---cEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHH-HHHH
Confidence            468999999999999999998863211   1222211               12222221111 11100000000 0111


Q ss_pred             HHHHHHHHHHHHhcC--CCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HH
Q 015668          329 ANAIFDVLLSRASRT--PRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP-ED  382 (403)
Q Consensus       329 a~~~~~~ll~~al~~--g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~  382 (403)
                      +     .+....+.+  -..+|+|-  .++.+..++.+++.+.+..  ...++++.-. ++
T Consensus        96 l-----~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~  151 (176)
T cd03238          96 V-----KLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV  151 (176)
T ss_pred             H-----HHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            1     122223466  78999998  6778888887777776542  4556555544 44

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.02  E-value=0.021  Score=57.11  Aligned_cols=101  Identities=22%  Similarity=0.167  Sum_probs=56.6

Q ss_pred             CCCCceEEEEEccCCCChhHHHHHHHHhCCCcc--EEEeccHHHH----HHhhcCCCc-ccCCChHHH--HHHHHHHHHH
Q 015668          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLGTNLIL----EQMKVPGLL-RKHNYSERF--QCLMGRANAI  332 (403)
Q Consensus       262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~~~--~v~ls~D~ir----~~l~~~g~~-~~~~~~~~~--~~~~~~a~~~  332 (403)
                      ....+.|||++||.||||||...+++..+..++  ...+..|.+|    ++|...+.- +-..|.. +  -.....|   
T Consensus        97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygs-yte~dpv~ia---  172 (483)
T KOG0780|consen   97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGS-YTEADPVKIA---  172 (483)
T ss_pred             ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEec-ccccchHHHH---
Confidence            445689999999999999998888877766544  4567778654    333322210 0011110 0  0112222   


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHh
Q 015668          333 FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFV  367 (403)
Q Consensus       333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~  367 (403)
                       .+-++++-+.+..+||=+|.-.-..-..+++...
T Consensus       173 -~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~  206 (483)
T KOG0780|consen  173 -SEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMK  206 (483)
T ss_pred             -HHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHH
Confidence             2345556677876666556544333344555544

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.02  E-value=0.035  Score=56.02  Aligned_cols=40  Identities=25%  Similarity=0.234  Sum_probs=30.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC----CCccEEEeccHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLIL  304 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~----~~~~~v~ls~D~ir  304 (403)
                      ...+++|+|++|+||||.+.+|+..+    ..+...++..|..|
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R  179 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR  179 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence            45799999999999999999998653    11345677777653

>PRK08727 hypothetical protein; Validated

Probab=95.99  E-value=0.054  Score=51.03  Aligned_cols=36  Identities=17%  Similarity=0.196  Sum_probs=25.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNL  302 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~  302 (403)
                      ..++++|.+|+|||++++.++.+...  ...+.++.+.
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~   79 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA   79 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence            45999999999999999998654332  2345666554

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=95.98  E-value=0.088  Score=51.56  Aligned_cols=34  Identities=18%  Similarity=0.254  Sum_probs=26.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls  299 (403)
                      -+.+++++|+||+||||+|+.+++++.. .+..++
T Consensus        42 ~~~~lll~G~~G~GKT~la~~l~~~~~~-~~~~i~   75 (316)
T PHA02544         42 IPNMLLHSPSPGTGKTTVAKALCNEVGA-EVLFVN   75 (316)
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhCc-cceEec
Confidence            4678888999999999999999987642 244443

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.98  E-value=0.12  Score=46.89  Aligned_cols=117  Identities=12%  Similarity=0.081  Sum_probs=61.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC---CCccEEEeccHH----HHHHhhc-CCCcccCCChHHHHHHH-H----HH--
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTNL----ILEQMKV-PGLLRKHNYSERFQCLM-G----RA--  329 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~---~~~~~v~ls~D~----ir~~l~~-~g~~~~~~~~~~~~~~~-~----~a--  329 (403)
                      ..+++.++|.+||||||+.+.++-..   +..+-+.++...    ++..+.. +-...........+.+. .    ..  
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSg  111 (192)
T cd03232          32 PGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSV  111 (192)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcCCH
Confidence            35899999999999999999998532   233445554322    2222211 10000000001111111 0    00  


Q ss_pred             HHHHH-HHHHHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEEC-ChH
Q 015668          330 NAIFD-VLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFP-KPE  381 (403)
Q Consensus       330 ~~~~~-~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~-~pe  381 (403)
                      .+..+ .+....+.+...+|+|-  +.+....++.+++.+.+..  ...++++. .++
T Consensus       112 Ge~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~  169 (192)
T cd03232         112 EQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS  169 (192)
T ss_pred             HHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence            01111 22233457788999998  6677888888777777642  34555543 344

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08116 hypothetical protein; Validated

Probab=95.96  E-value=0.063  Score=51.80  Aligned_cols=42  Identities=17%  Similarity=0.167  Sum_probs=31.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQM  307 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir~~l  307 (403)
                      ..-+++.|.||+|||++|..+++++.  ...++.++..++...+
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i  157 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI  157 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence            34688999999999999999988653  2346677776665554

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=95.93  E-value=0.11  Score=46.66  Aligned_cols=118  Identities=14%  Similarity=0.081  Sum_probs=62.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccHHH-------HHHhhcCCCcccCCCh-HHHHHHHHHH---HHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLI-------LEQMKVPGLLRKHNYS-ERFQCLMGRA---NAI  332 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D~i-------r~~l~~~g~~~~~~~~-~~~~~~~~~a---~~~  332 (403)
                      ..+++.++|.+||||||+.+.++...+. .+-+.++...+       +..+....... .-+. ...+.+....   ++.
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~-~~~~~tv~~~i~~~LS~G~~q  105 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRP-YLFDTTLRNNLGRRFSGGERQ  105 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCC-eeecccHHHhhcccCCHHHHH
Confidence            3578999999999999999999876542 23455543211       22211100000 0011 1111111000   011


Q ss_pred             HHHHHHHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC-cEEEEEECC-hHHH
Q 015668          333 FDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR-KIAVVVFPK-PEDL  383 (403)
Q Consensus       333 ~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~-pe~~  383 (403)
                      .-.+....+.+.+.+|+|-  ..+....++.+++.+.+.. ...++++.. ++++
T Consensus       106 rv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~  160 (178)
T cd03247         106 RLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI  160 (178)
T ss_pred             HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence            1112233357888999998  5677777887777776643 445555544 4544

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=95.92  E-value=0.0053  Score=58.22  Aligned_cols=31  Identities=19%  Similarity=0.300  Sum_probs=22.4

Q ss_pred             EEccCCCChhHHHHHHHHhCCCc--cEEEeccH
Q 015668          271 MVGLPASGKTTWAEKWVKDHPEK--RYILLGTN  301 (403)
Q Consensus       271 l~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D  301 (403)
                      ++|+|||||||+.+.+.+-+...  ...+||.|
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD   33 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD   33 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence            48999999999999998766532  46778877

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK15453 phosphoribulokinase; Provisional

Probab=95.92  E-value=0.0065  Score=58.80  Aligned_cols=38  Identities=13%  Similarity=0.192  Sum_probs=30.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLI  303 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~i  303 (403)
                      .-+|.++|.|||||||+|+.+++.+...  ...+|+.|..
T Consensus         5 ~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~y   44 (290)
T PRK15453          5 HPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSF   44 (290)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccc
Confidence            4689999999999999999998766422  3577888864

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=95.92  E-value=0.078  Score=52.19  Aligned_cols=35  Identities=17%  Similarity=0.262  Sum_probs=26.3

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCc----cEEEeccHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEK----RYILLGTNL  302 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~----~~v~ls~D~  302 (403)
                      .+++.|+||+||||+|+.+++++...    .++.++..+
T Consensus        38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~   76 (337)
T PRK12402         38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD   76 (337)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence            47899999999999999998876422    245665543

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=95.92  E-value=0.028  Score=52.08  Aligned_cols=39  Identities=18%  Similarity=0.145  Sum_probs=29.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI  303 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~i  303 (403)
                      ....++++|.||+||||+|+.++.+..  ...++.++.+.+
T Consensus        37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~   77 (226)
T TIGR03420        37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL   77 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence            357899999999999999999986643  223666765554

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=95.90  E-value=0.086  Score=51.74  Aligned_cols=120  Identities=13%  Similarity=0.199  Sum_probs=68.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH--HHHhhc----------CCCccc--CCChHHHHHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI--LEQMKV----------PGLLRK--HNYSERFQCLMGRANA  331 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i--r~~l~~----------~g~~~~--~~~~~~~~~~~~~a~~  331 (403)
                      -+||++.|..|||||-+|-.|+..++   ..+||.|.+  -+.+.+          .|.+-.  ....+..+....+-..
T Consensus         7 ~KVvvI~G~TGsGKSrLaVdLA~rf~---~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~   83 (348)
T KOG1384|consen    7 DKVVVIMGATGAGKSRLAVDLATRFP---GEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFED   83 (348)
T ss_pred             ceEEEEecCCCCChhhhHHHHHHhCC---ceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHH
Confidence            57999999999999999999999998   578888852  111110          010000  0011111111112122


Q ss_pred             HHHHHHHHHhcCCC-eEEEeCCCCCHHHHHHHHHH--------Hhc--------C-CcEEEEEECCh-HHHHHHHHHhc
Q 015668          332 IFDVLLSRASRTPR-NFIIDQTNVFKSARKRKLRL--------FVN--------F-RKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       332 ~~~~ll~~al~~g~-~vIlD~Tn~~~~~R~~~~~~--------~~~--------~-~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      .....++...++|+ ++|+=.||.+-.+   ++..        +..        + ..-++++++++ ..+-+|+.+|.
T Consensus        84 ~a~~aie~I~~rgk~PIv~GGs~~yi~a---l~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~RV  159 (348)
T KOG1384|consen   84 DASRAIEEIHSRGKLPIVVGGSNSYLQA---LLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKRV  159 (348)
T ss_pred             HHHHHHHHHHhCCCCCEEeCCchhhHHH---HhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHHH
Confidence            22234444445555 6666779987532   2211        111        0 13577899987 78999999986

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=95.90  E-value=0.057  Score=50.68  Aligned_cols=32  Identities=19%  Similarity=0.415  Sum_probs=21.8

Q ss_pred             EEEEccCCCChhHHHHHH---HHhCCCccEEEeccH
Q 015668          269 MMMVGLPASGKTTWAEKW---VKDHPEKRYILLGTN  301 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l---~~~~~~~~~v~ls~D  301 (403)
                      .+++|+|||||||+..-.   ..... ..+.++|.|
T Consensus         5 qvVIGPPgSGKsTYc~g~~~fls~~g-r~~~vVNLD   39 (290)
T KOG1533|consen    5 QVVIGPPGSGKSTYCNGMSQFLSAIG-RPVAVVNLD   39 (290)
T ss_pred             eEEEcCCCCCccchhhhHHHHHHHhC-CceEEEecC
Confidence            357899999999996444   34433 235667776

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=95.89  E-value=0.037  Score=52.19  Aligned_cols=36  Identities=17%  Similarity=0.375  Sum_probs=27.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC--CCccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~ls~D  301 (403)
                      ..++++.|.||||||++|.+++.+.  ..+..+.++.+
T Consensus        21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e   58 (237)
T TIGR03877        21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE   58 (237)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence            6899999999999999999876542  23345666655

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK12377 putative replication protein; Provisional

Probab=95.89  E-value=0.053  Score=51.76  Aligned_cols=43  Identities=19%  Similarity=0.343  Sum_probs=32.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHHHHHhh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMK  308 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~ir~~l~  308 (403)
                      ..-+++.|.||+|||++|..++..+..+  .++.++..++++.+.
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~  145 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLH  145 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHH
Confidence            3578999999999999999998776432  356676676666653

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=95.88  E-value=0.067  Score=48.09  Aligned_cols=112  Identities=16%  Similarity=0.188  Sum_probs=59.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEeccH--------HHHHHhh-------cCCCccc-CCChHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTN--------LILEQMK-------VPGLLRK-HNYSERFQCLMG  327 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls~D--------~ir~~l~-------~~g~~~~-~~~~~~~~~~~~  327 (403)
                      ..+++.++|.+||||||+.+.++...+ ..+-+.++..        .++..+.       ..|.... .........  .
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~--G  101 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG--G  101 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH--H
Confidence            468999999999999999999987654 2333444321        1111110       0121000 000000000  0


Q ss_pred             HHHHHHHHHHHHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECCh
Q 015668          328 RANAIFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP  380 (403)
Q Consensus       328 ~a~~~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~p  380 (403)
                      +  +..-.+....+.+...+|+|-  .++....++.+++.+.+..   ...++++...
T Consensus       102 ~--~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~  157 (180)
T cd03214         102 E--RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD  157 (180)
T ss_pred             H--HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            0  001112233457889999998  5677778887777776542   3455555443

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=95.87  E-value=0.041  Score=51.66  Aligned_cols=36  Identities=17%  Similarity=0.368  Sum_probs=27.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D  301 (403)
                      .++++++|.||+|||||+.+++....   ....+.++.+
T Consensus        13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E   51 (242)
T cd00984          13 GDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE   51 (242)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence            58999999999999999888764321   2346777754

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>PF05729 NACHT: NACHT domain

Probab=95.86  E-value=0.0057  Score=53.20  Aligned_cols=25  Identities=32%  Similarity=0.493  Sum_probs=21.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +++++.|.||+||||++++++..+.
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~   25 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLA   25 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHH
Confidence            4789999999999999999886554

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=95.85  E-value=0.03  Score=49.90  Aligned_cols=38  Identities=21%  Similarity=0.307  Sum_probs=29.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE  305 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~  305 (403)
                      +.+++++|.||+||||..+...+.+-  .+.++|.-+++-
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~--~~~ivNyG~~Ml   41 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELV--KHKIVNYGDLML   41 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHHh--hceeeeHhHHHH
Confidence            68999999999999999988888872  155666665543

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=95.84  E-value=0.03  Score=53.67  Aligned_cols=130  Identities=19%  Similarity=0.282  Sum_probs=69.8

Q ss_pred             CCCCceEEEEEccCCCChhHHHHHHHHhCCC---c-cEEEeccHHH------HHHhhc---CCCcccCCChH-HHHHHHH
Q 015668          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPE---K-RYILLGTNLI------LEQMKV---PGLLRKHNYSE-RFQCLMG  327 (403)
Q Consensus       262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~---~-~~v~ls~D~i------r~~l~~---~g~~~~~~~~~-~~~~~~~  327 (403)
                      +.+.+-+|-++|.||+||||.|+.+..-+..   . ..-.|-+|.+      .++.++   .|-+  .+|.. .+-....
T Consensus        78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfP--eSyD~~~ll~fl~  155 (283)
T COG1072          78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFP--ESYDVAALLRFLS  155 (283)
T ss_pred             CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCC--ccccHHHHHHHHH
Confidence            4567899999999999999999988764432   1 2556666742      222211   1211  12221 1111111


Q ss_pred             HHHH--------HHHHHHHH-------HhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          328 RANA--------IFDVLLSR-------ASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       328 ~a~~--------~~~~ll~~-------al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      .++.        .+..++.-       -...-+.+|+...|+..... .|. .+.++-.+ -+|++.+ +.+.+|..+|-
T Consensus       156 ~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~-p~~-~~sdffDf-SIyvDa~~~~le~wyi~Rf  232 (283)
T COG1072         156 DVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGE-PWL-FLSDFFDF-SIYVDADEELLEERYIERF  232 (283)
T ss_pred             HHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCC-ccc-cccccceE-EEEecCCHHHHHHHHHHHH
Confidence            1110        00111100       12455678888888766543 221 22333122 2599998 78999999997


Q ss_pred             cccCc
Q 015668          392 KEMGK  396 (403)
Q Consensus       392 ~~~g~  396 (403)
                      ...|.
T Consensus       233 l~~g~  237 (283)
T COG1072         233 LKFGL  237 (283)
T ss_pred             Hhccc
Confidence            54443

>PTZ00202 tuzin; Provisional

Probab=95.83  E-value=0.12  Score=53.26  Aligned_cols=106  Identities=10%  Similarity=0.152  Sum_probs=56.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc---HHHHHHhh-cCCCcccCCChHHHHHHHHHHHHHHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT---NLILEQMK-VPGLLRKHNYSERFQCLMGRANAIFDVLLSRA  340 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~---D~ir~~l~-~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~a  340 (403)
                      .+.+++++|.+|+||||+++.+...++. ...+++.   ++++..+. .-|....  +.  -..+.+++.+   .++...
T Consensus       285 ~privvLtG~~G~GKTTLlR~~~~~l~~-~qL~vNprg~eElLr~LL~ALGV~p~--~~--k~dLLrqIqe---aLl~~~  356 (550)
T PTZ00202        285 HPRIVVFTGFRGCGKSSLCRSAVRKEGM-PAVFVDVRGTEDTLRSVVKALGVPNV--EA--CGDLLDFISE---ACRRAK  356 (550)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhcCCc-eEEEECCCCHHHHHHHHHHHcCCCCc--cc--HHHHHHHHHH---HHHHHH
Confidence            4679999999999999999999987762 2233333   33322221 1232111  11  0223333332   333333


Q ss_pred             hcCCCeEEE-----eCCCCCHHHHHHHHHHHhcCCcEEEEEECCh
Q 015668          341 SRTPRNFII-----DQTNVFKSARKRKLRLFVNFRKIAVVVFPKP  380 (403)
Q Consensus       341 l~~g~~vIl-----D~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p  380 (403)
                      ..+|+.+||     +..++.+-+... +.+..+. +.+-++++.|
T Consensus       357 ~e~GrtPVLII~lreg~~l~rvyne~-v~la~dr-r~ch~v~evp  399 (550)
T PTZ00202        357 KMNGETPLLVLKLREGSSLQRVYNEV-VALACDR-RLCHVVIEVP  399 (550)
T ss_pred             HhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccc-hhheeeeeeh
Confidence            343554433     556676666553 5555553 4555555555

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=95.83  E-value=0.046  Score=54.26  Aligned_cols=27  Identities=19%  Similarity=0.286  Sum_probs=23.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      .+.|+++|.||+||||+++.|++.+..
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~  188 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNT  188 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            468899999999999999999988653

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=95.83  E-value=0.16  Score=44.03  Aligned_cols=102  Identities=13%  Similarity=0.167  Sum_probs=58.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT  343 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~  343 (403)
                      ..+++.++|.+||||||+.+.++..++. .+-+.++..   ..+   +-..+.+ ...    .+++     .+....+.+
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~---~~i---~~~~~lS-~G~----~~rv-----~laral~~~   88 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST---VKI---GYFEQLS-GGE----KMRL-----ALAKLLLEN   88 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---EEE---EEEccCC-HHH----HHHH-----HHHHHHhcC
Confidence            3588999999999999999999876642 233444221   001   1000111 011    1111     122233578


Q ss_pred             CCeEEEeC--CCCCHHHHHHHHHHHhcCCcEEEEEECC-hHHH
Q 015668          344 PRNFIIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPK-PEDL  383 (403)
Q Consensus       344 g~~vIlD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~~-pe~~  383 (403)
                      -..+|+|.  .++....+..+.+.+++.. ..++++.. ++++
T Consensus        89 p~illlDEP~~~LD~~~~~~l~~~l~~~~-~til~~th~~~~~  130 (144)
T cd03221          89 PNLLLLDEPTNHLDLESIEALEEALKEYP-GTVILVSHDRYFL  130 (144)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHcC-CEEEEEECCHHHH
Confidence            88999998  6677888888777777653 34444433 3443

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.83  E-value=0.11  Score=54.09  Aligned_cols=28  Identities=29%  Similarity=0.216  Sum_probs=24.7

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +-+..++++|+||+||||+|+.+++.+.
T Consensus        38 ri~ha~Lf~GP~GtGKTTlAriLAk~Ln   65 (484)
T PRK14956         38 KIGHAYIFFGPRGVGKTTIARILAKRLN   65 (484)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3456889999999999999999999876

>PLN02840 tRNA dimethylallyltransferase

Probab=95.83  E-value=0.0093  Score=60.88  Aligned_cols=35  Identities=17%  Similarity=0.265  Sum_probs=29.2

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      ...+|+++|++||||||+|..|++.++.   .+|+.|.
T Consensus        20 ~~~vi~I~GptgsGKTtla~~La~~~~~---~iis~Ds   54 (421)
T PLN02840         20 KEKVIVISGPTGAGKSRLALELAKRLNG---EIISADS   54 (421)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHCCC---CeEeccc
Confidence            3568999999999999999999999873   4666664

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.83  E-value=0.031  Score=56.73  Aligned_cols=40  Identities=20%  Similarity=0.199  Sum_probs=31.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLIL  304 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir  304 (403)
                      .+.+|+++|++|+||||.+.+|+..+..  +...+++.|..|
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R  281 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  281 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence            3689999999999999999999865542  236678887543

>PLN02748 tRNA dimethylallyltransferase

Probab=95.82  E-value=0.011  Score=61.26  Aligned_cols=36  Identities=19%  Similarity=0.372  Sum_probs=31.8

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      ....+|+++|++||||||+|..|+..++   ..+||.|.
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~~---~eii~~Ds   55 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHFP---VEIINADS   55 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcC---eeEEcCch
Confidence            3457899999999999999999999987   67899995

>COG3911 Predicted ATPase [General function prediction only]

Probab=95.81  E-value=0.056  Score=47.34  Aligned_cols=43  Identities=19%  Similarity=0.212  Sum_probs=32.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhc
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV  309 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~  309 (403)
                      .+++++.|.||+||||+.+.|++.--. -+....+|.|+++-..
T Consensus         9 ~~~fIltGgpGaGKTtLL~aLa~~Gfa-tvee~~r~ii~~es~~   51 (183)
T COG3911           9 HKRFILTGGPGAGKTTLLAALARAGFA-TVEEAGRDIIALESAQ   51 (183)
T ss_pred             ceEEEEeCCCCCcHHHHHHHHHHcCce-eeccchhhHHHHHHhc
Confidence            378999999999999999999876431 2455677877766543

>PRK13695 putative NTPase; Provisional

Probab=95.80  E-value=0.064  Score=47.90  Aligned_cols=23  Identities=30%  Similarity=0.283  Sum_probs=19.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHhC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~  290 (403)
                      -|+++|.|||||||+++.+...+
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37889999999999999976554

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=95.80  E-value=0.19  Score=45.95  Aligned_cols=56  Identities=21%  Similarity=0.293  Sum_probs=38.2

Q ss_pred             HHHHHh-cCCCeEEEeC--CCCCHHHHHHHHHHHhcCCc--EEEEEECChHHHHHHHHHhc
Q 015668          336 LLSRAS-RTPRNFIIDQ--TNVFKSARKRKLRLFVNFRK--IAVVVFPKPEDLKIRSVKRF  391 (403)
Q Consensus       336 ll~~al-~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~~--~~vv~l~~pe~~~~R~~~R~  391 (403)
                      .+.+|+ .+-...|.|-  .|+.+..-.++|+.|.++++  ..++.-.-+..+.++..+|.
T Consensus       147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rv  207 (223)
T COG2884         147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRV  207 (223)
T ss_pred             HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcE
Confidence            344443 4556666665  79999988889999999873  34433333577888877775

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=95.80  E-value=0.063  Score=48.54  Aligned_cols=111  Identities=15%  Similarity=0.067  Sum_probs=62.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEeccHHHHHHhhcCCCcccCC-ChHHHHHHHHHHHHHHHHHHHHHhc
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNLILEQMKVPGLLRKHN-YSERFQCLMGRANAIFDVLLSRASR  342 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls~D~ir~~l~~~g~~~~~~-~~~~~~~~~~~a~~~~~~ll~~al~  342 (403)
                      ..+++.++|.+||||||+.+.++.-.+ ..+.+.++...    +   +...+.. .+.- +  .+++     .+....+.
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----i---~~~~q~~~LSgG-q--~qrv-----~laral~~   88 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT----P---VYKPQYIDLSGG-E--LQRV-----AIAAALLR   88 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE----E---EEEcccCCCCHH-H--HHHH-----HHHHHHhc
Confidence            357999999999999999999987543 23344442210    0   1000100 0100 0  1111     12223357


Q ss_pred             CCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECChHHHHHHHHHh
Q 015668          343 TPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKPEDLKIRSVKR  390 (403)
Q Consensus       343 ~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~pe~~~~R~~~R  390 (403)
                      +...+|+|-  +++....++.+++.+.+..   ...++++.......++...|
T Consensus        89 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~  141 (177)
T cd03222          89 NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDR  141 (177)
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCE
Confidence            888999998  5677778877777766542   25566665544444454444

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=95.80  E-value=0.0074  Score=58.41  Aligned_cols=36  Identities=11%  Similarity=0.150  Sum_probs=28.8

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i  303 (403)
                      +|.++|.+||||||+++.++..++.....++..|.+
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~   36 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY   36 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence            477899999999999999998876544566777754

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=95.76  E-value=0.0097  Score=51.26  Aligned_cols=27  Identities=22%  Similarity=0.227  Sum_probs=24.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ...+|+|.|..||||||+++.+++.+.
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            356899999999999999999999876

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK00023 cmk cytidylate kinase; Provisional

Probab=95.74  E-value=0.0091  Score=56.06  Aligned_cols=35  Identities=29%  Similarity=0.295  Sum_probs=30.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i  303 (403)
                      ..+|.+.|+|||||||+|+.+++.+.   +.+++++.+
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~---~~~~~~~~~   38 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLG---FHYLDTGAM   38 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC---CCcccCchh
Confidence            36789999999999999999999986   667777764

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=95.71  E-value=0.01  Score=53.20  Aligned_cols=32  Identities=22%  Similarity=0.395  Sum_probs=24.8

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      ++++.|.||||||+||.+++.... ++.+++.+
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~~-~~~~y~at   32 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAELG-GPVTYIAT   32 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcC-CCeEEEEc
Confidence            478899999999999999987744 33555544

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.71  E-value=0.075  Score=52.81  Aligned_cols=85  Identities=18%  Similarity=0.237  Sum_probs=56.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP  344 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g  344 (403)
                      .|+=|+|-|+||.|||-+|+..+.+... .++.+..-++.+++...|        .   .++       +++.+.|-.+-
T Consensus       184 PPKGVLLYGPPGTGKTLLAkAVA~~T~A-tFIrvvgSElVqKYiGEG--------a---RlV-------RelF~lAreka  244 (406)
T COG1222         184 PPKGVLLYGPPGTGKTLLAKAVANQTDA-TFIRVVGSELVQKYIGEG--------A---RLV-------RELFELAREKA  244 (406)
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccCc-eEEEeccHHHHHHHhccc--------h---HHH-------HHHHHHHhhcC
Confidence            4788999999999999999999998864 477777777777654222        1   122       22222222222


Q ss_pred             CeEEE-------------eCCCCCHHHHHHHHHHHhc
Q 015668          345 RNFII-------------DQTNVFKSARKRKLRLFVN  368 (403)
Q Consensus       345 ~~vIl-------------D~Tn~~~~~R~~~~~~~~~  368 (403)
                      -++|+             +.|.-.++.++-+|+++.+
T Consensus       245 PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~q  281 (406)
T COG1222         245 PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQ  281 (406)
T ss_pred             CeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHh
Confidence            23332             3467788888888988875

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=95.68  E-value=0.01  Score=55.75  Aligned_cols=39  Identities=18%  Similarity=0.166  Sum_probs=29.7

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCc--cEEE-eccHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYIL-LGTNL  302 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~-ls~D~  302 (403)
                      ..+.+|.++|++||||||+++.++..++..  ...+ ++.|.
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~   72 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDG   72 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccc
Confidence            458999999999999999999999877642  1223 55554

>PLN03025 replication factor C subunit; Provisional

Probab=95.67  E-value=0.043  Score=54.12  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=20.2

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      +++.|+||+||||+|+.+++++
T Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         37 LILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999876

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=95.66  E-value=0.14  Score=45.93  Aligned_cols=119  Identities=13%  Similarity=0.118  Sum_probs=61.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccHH----------HHHHhhcCCCcccCCCh-HHHHHHH---HHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNL----------ILEQMKVPGLLRKHNYS-ERFQCLM---GRA  329 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D~----------ir~~l~~~g~~~~~~~~-~~~~~~~---~~a  329 (403)
                      ..+++.++|.+||||||+.+.++..++. .+-+.++...          ++............... ...+.+.   ..-
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G  104 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGG  104 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCHH
Confidence            3588999999999999999999876552 2334443211          11111100000000001 1111110   000


Q ss_pred             HHHHHHHHHHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECC-hHHH
Q 015668          330 NAIFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPK-PEDL  383 (403)
Q Consensus       330 ~~~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~-pe~~  383 (403)
                      ++..-.++...+.+.+.+|+|-  +++....+..+++.+.+..   ...++++.. ++++
T Consensus       105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~  164 (178)
T cd03229         105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEA  164 (178)
T ss_pred             HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            1111122233457888999998  6677888887777776542   245554443 3443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=95.65  E-value=0.011  Score=53.29  Aligned_cols=28  Identities=18%  Similarity=0.215  Sum_probs=24.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      .+.++.++|.+||||||+++++...+..
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~   32 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALCA   32 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence            4668999999999999999999987764

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=95.63  E-value=0.007  Score=58.17  Aligned_cols=36  Identities=14%  Similarity=0.204  Sum_probs=28.6

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLI  303 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~i  303 (403)
                      +|.++|.+||||||+++++.+.+...  .+.+|+.|..
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~y   38 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSF   38 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccc
Confidence            47889999999999999998766432  3677888864

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=95.62  E-value=0.095  Score=54.29  Aligned_cols=38  Identities=18%  Similarity=0.263  Sum_probs=28.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLIL  304 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir  304 (403)
                      .-+++.|.||+|||++++.++.++.  ....+.++.+.+.
T Consensus       142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~  181 (445)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT  181 (445)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH
Confidence            3467899999999999999887543  2346777776543

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=95.62  E-value=0.033  Score=56.62  Aligned_cols=38  Identities=18%  Similarity=0.306  Sum_probs=29.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir  304 (403)
                      +.-|+|+|+||+|||++|+.++.++.. .++.++...+.
T Consensus       165 p~gvLL~GppGtGKT~lAkaia~~~~~-~~i~v~~~~l~  202 (389)
T PRK03992        165 PKGVLLYGPPGTGKTLLAKAVAHETNA-TFIRVVGSELV  202 (389)
T ss_pred             CCceEEECCCCCChHHHHHHHHHHhCC-CEEEeehHHHh
Confidence            567899999999999999999988763 36666555443

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=95.60  E-value=0.12  Score=48.97  Aligned_cols=27  Identities=26%  Similarity=0.230  Sum_probs=22.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      +-=++++|.+||||||+...+...+..
T Consensus        13 ~fr~viIG~sGSGKT~li~~lL~~~~~   39 (241)
T PF04665_consen   13 PFRMVIIGKSGSGKTTLIKSLLYYLRH   39 (241)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcc
Confidence            344678999999999999999887654

This is thought to be an ATPase involved in viral DNA packaging [].

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=95.55  E-value=0.046  Score=54.93  Aligned_cols=44  Identities=18%  Similarity=0.121  Sum_probs=35.6

Q ss_pred             CCCCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (403)
Q Consensus       262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~  306 (403)
                      +-+.|..++|-|+||+|||.+|+.++.++.. .+++++.-++..+
T Consensus       144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~-~~i~vsa~eL~sk  187 (413)
T PLN00020        144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGI-EPIVMSAGELESE  187 (413)
T ss_pred             CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCC-CeEEEEHHHhhcC
Confidence            4466899999999999999999999999864 3677777665543

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=95.52  E-value=0.065  Score=53.98  Aligned_cols=38  Identities=24%  Similarity=0.306  Sum_probs=28.3

Q ss_pred             CCCCceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      +....-=.++-|+||+||||+|+-++..... .++.+|.
T Consensus        44 ~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~-~f~~~sA   81 (436)
T COG2256          44 EAGHLHSMILWGPPGTGKTTLARLIAGTTNA-AFEALSA   81 (436)
T ss_pred             hcCCCceeEEECCCCCCHHHHHHHHHHhhCC-ceEEecc
Confidence            3344556678999999999999999988763 3555543

>PLN02796 D-glycerate 3-kinase

Probab=95.51  E-value=0.014  Score=57.98  Aligned_cols=39  Identities=21%  Similarity=0.011  Sum_probs=30.7

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNL  302 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~  302 (403)
                      +.+-+|.++|.+||||||+++.+...+...  ....|+.|+
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd  138 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD  138 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence            467899999999999999999999877632  245566664

>PRK09183 transposase/IS protein; Provisional

Probab=95.51  E-value=0.14  Score=49.11  Aligned_cols=41  Identities=20%  Similarity=0.132  Sum_probs=27.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQ  306 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir~~  306 (403)
                      .+.++++|+||+||||+|..+.....  +..+..++...+...
T Consensus       102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~  144 (259)
T PRK09183        102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ  144 (259)
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHH
Confidence            45688999999999999999864421  223445554444433

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=95.50  E-value=0.052  Score=55.38  Aligned_cols=35  Identities=20%  Similarity=0.286  Sum_probs=27.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      .+.-+++.|+||+|||++|+.++..+.. .++.+..
T Consensus       178 ~pkgvLL~GppGTGKT~LAkalA~~l~~-~fi~i~~  212 (398)
T PTZ00454        178 PPRGVLLYGPPGTGKTMLAKAVAHHTTA-TFIRVVG  212 (398)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCC-CEEEEeh
Confidence            3677999999999999999999988763 2455543

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.46  E-value=0.22  Score=44.07  Aligned_cols=106  Identities=16%  Similarity=0.191  Sum_probs=58.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccHHHH-----HHhh-cCCCcccCCChHHHHHHHHHHHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLIL-----EQMK-VPGLLRKHNYSERFQCLMGRANAIFDVLL  337 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D~ir-----~~l~-~~g~~~~~~~~~~~~~~~~~a~~~~~~ll  337 (403)
                      ..+++.++|.+||||||+.+.++...+. .+-+.++...+.     +... .-+...+  .+.  . ..+++     .+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q--LS~--G-~~qrl-----~la   94 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ--LSV--G-ERQMV-----EIA   94 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe--cCH--H-HHHHH-----HHH
Confidence            4689999999999999999999876542 233444321110     0000 0000000  000  0 01111     122


Q ss_pred             HHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEECCh
Q 015668          338 SRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP  380 (403)
Q Consensus       338 ~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p  380 (403)
                      ...+.+-..+|+|-  .++....|+.+++.+.++.  ...++++...
T Consensus        95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~  141 (163)
T cd03216          95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR  141 (163)
T ss_pred             HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            23357788999998  5678888888777777653  4555555443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=95.45  E-value=0.097  Score=48.78  Aligned_cols=37  Identities=19%  Similarity=0.265  Sum_probs=26.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC--CCccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~ls~D  301 (403)
                      ...++++.|.||+||||++.+++.+.  +.+..+.++.+
T Consensus        19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e   57 (229)
T TIGR03881        19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE   57 (229)
T ss_pred             CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            36899999999999999998875321  23345666654

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.44  E-value=0.18  Score=45.42  Aligned_cols=115  Identities=23%  Similarity=0.225  Sum_probs=60.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccHH---------HHHHhhcCCCccc--CCC--hHHHHHHHHH--H
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNL---------ILEQMKVPGLLRK--HNY--SERFQCLMGR--A  329 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D~---------ir~~l~~~g~~~~--~~~--~~~~~~~~~~--a  329 (403)
                      .+++.++|.+||||||+.+.++..++. .+-+.++...         .+..+........  ..+  ....+.+.-.  .
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~L  105 (182)
T cd03215          26 GEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLL  105 (182)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhhc
Confidence            578999999999999999999876542 2334443211         1111111000000  001  1111221100  0


Q ss_pred             H--HHHHHHHHH-HhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEECCh
Q 015668          330 N--AIFDVLLSR-ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP  380 (403)
Q Consensus       330 ~--~~~~~ll~~-al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p  380 (403)
                      .  +..+-.+.+ .+.+...+|+|-  .++.+..|+.+++.+.+..  ...++++...
T Consensus       106 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~  163 (182)
T cd03215         106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSE  163 (182)
T ss_pred             CHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            0  111112223 357888999998  6778888888777776542  3455555443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=95.44  E-value=0.12  Score=51.39  Aligned_cols=37  Identities=22%  Similarity=0.279  Sum_probs=27.4

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC-CccEEEecc
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGT  300 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls~  300 (403)
                      .+.++++++|++||||||+-+.++--.. ..+-+.|+.
T Consensus        27 ~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g   64 (338)
T COG3839          27 EDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDG   64 (338)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence            3568999999999999999999975332 234455544

>cd01131 PilT Pilus retraction ATPase PilT

Probab=95.43  E-value=0.012  Score=54.11  Aligned_cols=24  Identities=21%  Similarity=0.284  Sum_probs=21.6

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +|+++|++||||||+.+.+....+
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            689999999999999999887765

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=95.39  E-value=0.014  Score=56.62  Aligned_cols=38  Identities=29%  Similarity=0.330  Sum_probs=30.2

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~  302 (403)
                      .+.+|+++|++|+||||.+.+|+..+.    ...+.+|+.|.
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~  234 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT  234 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence            478999999999999999999876552    23467787775

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=95.38  E-value=0.1  Score=52.57  Aligned_cols=92  Identities=16%  Similarity=0.220  Sum_probs=56.2

Q ss_pred             CCCCceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHHHHHhhcCCCc------------cc-----------C
Q 015668          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLL------------RK-----------H  316 (403)
Q Consensus       262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~ir~~l~~~g~~------------~~-----------~  316 (403)
                      +.....++|++|+-.|||||+++.|++++-+.  .+.+|+.|.=-.++..+|..            .+           -
T Consensus        69 ~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~i  148 (398)
T COG1341          69 SAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSI  148 (398)
T ss_pred             hccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceEEEecc
Confidence            34557899999999999999999999888753  36788777300011000000            00           0


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeCCCCCHH
Q 015668          317 NYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKS  357 (403)
Q Consensus       317 ~~~~~~~~~~~~a~~~~~~ll~~al~~g~~vIlD~Tn~~~~  357 (403)
                      +.+..+..++..+.    .+++.|.+.-..+|||.+-+..-
T Consensus       149 sP~~~~~~~i~~v~----rL~~~a~~~~~~ilIdT~GWi~G  185 (398)
T COG1341         149 SPQGFPGRYIAGVA----RLVDLAKKEADFILIDTDGWIKG  185 (398)
T ss_pred             CCCCChHHHHHHHH----HHHHHhhccCCEEEEcCCCceeC
Confidence            01122334444333    46666667778889999887765

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=95.36  E-value=0.01  Score=60.37  Aligned_cols=30  Identities=23%  Similarity=0.414  Sum_probs=25.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccE
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRY  295 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~  295 (403)
                      .+=|++.|.||+||||||+.+++-+...+.
T Consensus       263 aeGILIAG~PGaGKsTFaqAlAefy~~~Gk  292 (604)
T COG1855         263 AEGILIAGAPGAGKSTFAQALAEFYASQGK  292 (604)
T ss_pred             hcceEEecCCCCChhHHHHHHHHHHHhcCc
Confidence            577899999999999999999987765443

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=95.34  E-value=0.057  Score=56.69  Aligned_cols=39  Identities=21%  Similarity=0.310  Sum_probs=30.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE  305 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~  305 (403)
                      +.=++|.|+||+|||++|+.++.+... .++.++...+..
T Consensus        88 ~~giLL~GppGtGKT~la~alA~~~~~-~~~~i~~~~~~~  126 (495)
T TIGR01241        88 PKGVLLVGPPGTGKTLLAKAVAGEAGV-PFFSISGSDFVE  126 (495)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHcCC-CeeeccHHHHHH
Confidence            455899999999999999999988742 366666555444

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=95.33  E-value=0.069  Score=53.72  Aligned_cols=34  Identities=21%  Similarity=0.315  Sum_probs=27.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      +.-+++.|+||+||||+|+.++.++.. .++.+..
T Consensus       156 p~gvLL~GppGtGKT~lakaia~~l~~-~~~~v~~  189 (364)
T TIGR01242       156 PKGVLLYGPPGTGKTLLAKAVAHETNA-TFIRVVG  189 (364)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCCC-CEEecch
Confidence            456899999999999999999998764 3444443

Many proteins may score above the trusted cutoff because an internal

>PRK13342 recombination factor protein RarA; Reviewed

Probab=95.32  E-value=0.13  Score=52.73  Aligned_cols=33  Identities=27%  Similarity=0.345  Sum_probs=25.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls  299 (403)
                      ..-+++.|+||+||||+|+.+++.... .++.++
T Consensus        36 ~~~ilL~GppGtGKTtLA~~ia~~~~~-~~~~l~   68 (413)
T PRK13342         36 LSSMILWGPPGTGKTTLARIIAGATDA-PFEALS   68 (413)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCC-CEEEEe
Confidence            345778999999999999999987653 355554

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=95.31  E-value=0.058  Score=50.39  Aligned_cols=39  Identities=23%  Similarity=0.448  Sum_probs=28.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHh----CCCccEEEeccHHHHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKD----HPEKRYILLGTNLILEQ  306 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~----~~~~~~v~ls~D~ir~~  306 (403)
                      .+++.|.+|+|||++.+.++.+    .++.+++.++.+++...
T Consensus        36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~   78 (219)
T PF00308_consen   36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE   78 (219)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH
Confidence            4678999999999998877653    45556788877765443

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK06921 hypothetical protein; Provisional

Probab=95.28  E-value=0.26  Score=47.43  Aligned_cols=41  Identities=17%  Similarity=0.159  Sum_probs=29.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCc---cEEEeccHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK---RYILLGTNLILEQ  306 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~---~~v~ls~D~ir~~  306 (403)
                      ..-++|.|.||+|||++|..++.++..+   .++.++..+++..
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~  160 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD  160 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence            4678999999999999999998876532   3455555444443

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.28  E-value=0.21  Score=52.25  Aligned_cols=27  Identities=30%  Similarity=0.228  Sum_probs=23.7

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      +-+..++++|+||.||||.|+.+++.+
T Consensus        33 ri~ha~Lf~Gp~G~GKTT~ArilAk~L   59 (491)
T PRK14964         33 KIPQSILLVGASGVGKTTCARIISLCL   59 (491)
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHH
Confidence            446789999999999999999998865

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=95.27  E-value=0.022  Score=48.38  Aligned_cols=28  Identities=21%  Similarity=0.309  Sum_probs=24.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      ...+|+|.|.-|||||||++.+++.+..
T Consensus        14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~   41 (123)
T PF02367_consen   14 PGDVILLSGDLGAGKTTFVRGLARALGI   41 (123)
T ss_dssp             S-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            4589999999999999999999999863

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.26  E-value=0.022  Score=47.14  Aligned_cols=22  Identities=23%  Similarity=0.234  Sum_probs=20.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWV  287 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~  287 (403)
                      .++++++|++||||||+++.+.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            5889999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=95.25  E-value=0.021  Score=55.52  Aligned_cols=39  Identities=21%  Similarity=0.240  Sum_probs=30.3

Q ss_pred             CCCceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccH
Q 015668          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTN  301 (403)
Q Consensus       263 ~~~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D  301 (403)
                      .+...+|-++|.|||||||+..++...+.. ....+|..|
T Consensus       101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD  140 (290)
T PRK10463        101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGD  140 (290)
T ss_pred             hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCC
Confidence            356899999999999999999999887643 245555444

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=95.23  E-value=0.02  Score=58.35  Aligned_cols=39  Identities=15%  Similarity=-0.052  Sum_probs=30.1

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNL  302 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~  302 (403)
                      ..|.+|-++|.+||||||+++.+...+..  ....+|+.|+
T Consensus       210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDD  250 (460)
T PLN03046        210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDD  250 (460)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECC
Confidence            45889999999999999999999766532  2355667675

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=95.22  E-value=0.024  Score=51.07  Aligned_cols=31  Identities=26%  Similarity=0.527  Sum_probs=23.6

Q ss_pred             EEEEEccCCCChhHHHHHHH-HhCCCccEEEe
Q 015668          268 VMMMVGLPASGKTTWAEKWV-KDHPEKRYILL  298 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~-~~~~~~~~v~l  298 (403)
                      ++++.|..||||||+.+++. ....+.++.+|
T Consensus         2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI   33 (178)
T PF02492_consen    2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVI   33 (178)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEE
Confidence            67899999999999999999 44444445444

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>TIGR03689 pup_AAA proteasome ATPase

Probab=95.22  E-value=0.049  Score=57.20  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=23.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +.=++|.|+||+|||++|+.++.++.
T Consensus       216 p~GILLyGPPGTGKT~LAKAlA~eL~  241 (512)
T TIGR03689       216 PKGVLLYGPPGCGKTLIAKAVANSLA  241 (512)
T ss_pred             CcceEEECCCCCcHHHHHHHHHHhhc
Confidence            45689999999999999999999875

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK07952 DNA replication protein DnaC; Validated

Probab=95.22  E-value=0.22  Score=47.38  Aligned_cols=41  Identities=20%  Similarity=0.325  Sum_probs=31.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQM  307 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l  307 (403)
                      ..++|.|.||+|||++|..++..+..  ..+++++..++...+
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l  142 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM  142 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH
Confidence            47899999999999999999887642  245667666666554

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.21  E-value=0.014  Score=54.10  Aligned_cols=36  Identities=25%  Similarity=0.322  Sum_probs=26.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC-CCccEEEecc
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH-PEKRYILLGT  300 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~-~~~~~v~ls~  300 (403)
                      ..+++.+||++||||||+.|.+..-. +..+-+.++.
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g   63 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDG   63 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECC
Confidence            46899999999999999999996422 2334555544

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.20  E-value=0.088  Score=57.66  Aligned_cols=39  Identities=28%  Similarity=0.284  Sum_probs=30.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLIL  304 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~ir  304 (403)
                      .++|+|+|++|+||||.+.+|+..+.    .+...+++.|..|
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R  227 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR  227 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence            58999999999999999999986541    2346678888654

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.18  E-value=0.2  Score=53.43  Aligned_cols=42  Identities=14%  Similarity=0.268  Sum_probs=32.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      .++=|+|-|+||+||||+|+.++.+-. ..++.|..-+++.++
T Consensus       467 ppkGVLlyGPPGC~KT~lAkalAne~~-~nFlsvkgpEL~sk~  508 (693)
T KOG0730|consen  467 PPKGVLLYGPPGCGKTLLAKALANEAG-MNFLSVKGPELFSKY  508 (693)
T ss_pred             CCceEEEECCCCcchHHHHHHHhhhhc-CCeeeccCHHHHHHh
Confidence            488999999999999999999998753 346777666555443

>PRK08760 replicative DNA helicase; Provisional

Probab=95.17  E-value=0.14  Score=53.48  Aligned_cols=37  Identities=22%  Similarity=0.354  Sum_probs=28.2

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D  301 (403)
                      ...++++.|.||.|||+||-.++....   ...+.++|.+
T Consensus       228 ~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlE  267 (476)
T PRK08760        228 PTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSME  267 (476)
T ss_pred             CCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEecc
Confidence            368999999999999999988875431   2346677775

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=95.16  E-value=0.086  Score=58.05  Aligned_cols=37  Identities=19%  Similarity=0.270  Sum_probs=29.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      .++-|++.|+||+||||+|+.++.++.. .++.++...
T Consensus       211 ~~~giLL~GppGtGKT~laraia~~~~~-~~i~i~~~~  247 (733)
T TIGR01243       211 PPKGVLLYGPPGTGKTLLAKAVANEAGA-YFISINGPE  247 (733)
T ss_pred             CCceEEEECCCCCChHHHHHHHHHHhCC-eEEEEecHH
Confidence            3567999999999999999999998763 356665544

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=95.16  E-value=0.018  Score=57.31  Aligned_cols=39  Identities=21%  Similarity=0.318  Sum_probs=29.6

Q ss_pred             CCCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccH
Q 015668          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTN  301 (403)
Q Consensus       263 ~~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D  301 (403)
                      ...+.+|.++|+|||||||++..+...+..  ....+|+.|
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~D   93 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVD   93 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeC
Confidence            345789999999999999999987665543  235666665

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=95.15  E-value=0.023  Score=52.39  Aligned_cols=30  Identities=30%  Similarity=0.408  Sum_probs=25.9

Q ss_pred             CCCCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+.+.+|.++|.+|||||||.+++.+.+.
T Consensus        18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             hhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            345789999999999999999999988744

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=95.14  E-value=0.012  Score=48.43  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=20.2

Q ss_pred             EEEEccCCCChhHHHHHHHHhCC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~  291 (403)
                      |++.|.||.|||++|+.|++.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999887653

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.14  E-value=0.077  Score=51.58  Aligned_cols=38  Identities=13%  Similarity=0.323  Sum_probs=29.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir  304 (403)
                      -.-|+|.|+||.|||++|+..+.+.+. -+..+|+-++.
T Consensus       166 wrgiLLyGPPGTGKSYLAKAVATEAnS-TFFSvSSSDLv  203 (439)
T KOG0739|consen  166 WRGILLYGPPGTGKSYLAKAVATEANS-TFFSVSSSDLV  203 (439)
T ss_pred             ceeEEEeCCCCCcHHHHHHHHHhhcCC-ceEEeehHHHH
Confidence            467899999999999999999988763 35666655444

>PHA02244 ATPase-like protein

Probab=95.12  E-value=0.04  Score=55.37  Aligned_cols=78  Identities=18%  Similarity=0.311  Sum_probs=45.6

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF  347 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~v  347 (403)
                      -|+|.|+||+||||+|+.++..+.. .++.++.  +.+.+...|....   ...|..          .-+-.++++|..+
T Consensus       121 PVLL~GppGtGKTtLA~aLA~~lg~-pfv~In~--l~d~~~L~G~i~~---~g~~~d----------gpLl~A~~~GgvL  184 (383)
T PHA02244        121 PVFLKGGAGSGKNHIAEQIAEALDL-DFYFMNA--IMDEFELKGFIDA---NGKFHE----------TPFYEAFKKGGLF  184 (383)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCC-CEEEEec--ChHHHhhcccccc---cccccc----------hHHHHHhhcCCEE
Confidence            4678999999999999999987653 3666753  2222222232110   111210          0122345789999


Q ss_pred             EEeCCCC-CHHHHHH
Q 015668          348 IIDQTNV-FKSARKR  361 (403)
Q Consensus       348 IlD~Tn~-~~~~R~~  361 (403)
                      |||..+. .++....
T Consensus       185 iLDEId~a~p~vq~~  199 (383)
T PHA02244        185 FIDEIDASIPEALII  199 (383)
T ss_pred             EEeCcCcCCHHHHHH
Confidence            9999764 4444443

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.11  E-value=0.16  Score=52.24  Aligned_cols=39  Identities=26%  Similarity=0.252  Sum_probs=30.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLIL  304 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~ir  304 (403)
                      ..+++++|++|+||||.+.+|+..+.    .....+|+.|..|
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r  263 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR  263 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence            46999999999999999888876542    2357778888743

>PRK04328 hypothetical protein; Provisional

Probab=95.11  E-value=0.1  Score=49.70  Aligned_cols=37  Identities=14%  Similarity=0.381  Sum_probs=27.2

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC--CCccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~ls~D  301 (403)
                      ...++++.|.||+|||+++.+++.+.  ..+..+.++.+
T Consensus        22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e   60 (249)
T PRK04328         22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE   60 (249)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence            35789999999999999999876542  22345666664

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.10  E-value=0.12  Score=54.37  Aligned_cols=28  Identities=21%  Similarity=0.109  Sum_probs=24.4

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +-+..++++|+||+||||+|+.+++.+.
T Consensus        34 ~l~ha~Lf~GppGtGKTTlA~~lA~~l~   61 (504)
T PRK14963         34 RLGHAYLFSGPRGVGKTTTARLIAMAVN   61 (504)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3467889999999999999999988764

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=95.10  E-value=0.065  Score=55.29  Aligned_cols=35  Identities=17%  Similarity=0.302  Sum_probs=27.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      .+.-++|+|+||+|||++|+.++.++... ++.+..
T Consensus       216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~-fi~V~~  250 (438)
T PTZ00361        216 PPKGVILYGPPGTGKTLLAKAVANETSAT-FLRVVG  250 (438)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCC-EEEEec
Confidence            35678899999999999999999987642 444433

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=95.08  E-value=0.018  Score=47.53  Aligned_cols=23  Identities=17%  Similarity=0.296  Sum_probs=20.0

Q ss_pred             EEEEccCCCChhHHHHHHHHhCC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~  291 (403)
                      |+++|.+|+||||+.++++....
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~~   24 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGEF   24 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS-
T ss_pred             EEEECcCCCCHHHHHHHHhcCCC
Confidence            68899999999999999997653

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=95.08  E-value=0.016  Score=51.53  Aligned_cols=26  Identities=38%  Similarity=0.488  Sum_probs=23.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      .++.++|.+||||||++.++.+.+..
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~~   27 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALSA   27 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            58899999999999999999988764

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=95.07  E-value=0.14  Score=56.05  Aligned_cols=25  Identities=28%  Similarity=0.397  Sum_probs=21.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      .-+++.|+||+||||+|+.+++...
T Consensus        53 ~slLL~GPpGtGKTTLA~aIA~~~~   77 (725)
T PRK13341         53 GSLILYGPPGVGKTTLARIIANHTR   77 (725)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhc
Confidence            3468899999999999999998764

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=95.06  E-value=0.02  Score=63.60  Aligned_cols=38  Identities=16%  Similarity=0.154  Sum_probs=33.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      .+|.+-|+|||||||+|+.+++.+.   +.+|+++.+...+
T Consensus        35 ~~i~idG~~gsGKst~~~~la~~l~---~~~~~~g~~yRa~   72 (863)
T PRK12269         35 VIIALDGPAGSGKSSVCRLLASRLG---AQCLNTGSFYRAF   72 (863)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHH
Confidence            5888899999999999999999997   7889888765554

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=95.05  E-value=0.043  Score=49.59  Aligned_cols=43  Identities=21%  Similarity=0.366  Sum_probs=31.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHHHHhh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMK  308 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir~~l~  308 (403)
                      ..-++|.|.||.|||++|..++.++-  ......++..++.+++.
T Consensus        47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~   91 (178)
T PF01695_consen   47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK   91 (178)
T ss_dssp             --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred             CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence            45699999999999999988865332  22367788888888875

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.03  E-value=0.19  Score=54.10  Aligned_cols=29  Identities=21%  Similarity=0.218  Sum_probs=25.4

Q ss_pred             CCCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       263 ~~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      .+-+..+|++|.+|.||||+|+.+++.+.
T Consensus        35 gRLpHA~LFtGP~GvGKTTLAriLAkaLn   63 (700)
T PRK12323         35 QRLHHAYLFTGTRGVGKTTLSRILAKSLN   63 (700)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34467899999999999999999999875

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=95.02  E-value=0.019  Score=51.10  Aligned_cols=28  Identities=18%  Similarity=0.256  Sum_probs=18.3

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+.+++++|.+|+||||+.+++...+.
T Consensus        22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~   49 (185)
T PF13191_consen   22 GSPRNLLLTGESGSGKTSLLRALLDRLA   49 (185)
T ss_dssp             -----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4579999999999999999998876554

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=95.02  E-value=0.063  Score=51.68  Aligned_cols=27  Identities=22%  Similarity=0.256  Sum_probs=23.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      --+|+++|.+||||||+.+.+....+.
T Consensus        80 ~GlilisG~tGSGKTT~l~all~~i~~  106 (264)
T cd01129          80 HGIILVTGPTGSGKTTTLYSALSELNT  106 (264)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence            358999999999999999999877753

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=95.01  E-value=0.38  Score=43.79  Aligned_cols=117  Identities=11%  Similarity=0.110  Sum_probs=61.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC--C-CccEEEeccHH-----HHHHhhcCCCcccCCCh-HHHHHHH--HH---H-
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH--P-EKRYILLGTNL-----ILEQMKVPGLLRKHNYS-ERFQCLM--GR---A-  329 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~--~-~~~~v~ls~D~-----ir~~l~~~g~~~~~~~~-~~~~~~~--~~---a-  329 (403)
                      ..+++.++|++||||||+.+.++..+  + ..+-+.++...     ++..+............ ...+...  ..   . 
T Consensus        34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS  113 (194)
T cd03213          34 PGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGLS  113 (194)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhccCC
Confidence            35889999999999999999998765  3 23344443221     22222111100000001 1111111  00   0 


Q ss_pred             -HHHHH-HHHHHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEE-CChH
Q 015668          330 -NAIFD-VLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVF-PKPE  381 (403)
Q Consensus       330 -~~~~~-~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l-~~pe  381 (403)
                       .+..+ .+....+.+-..+|+|-  +.+....|+.+++.+.+..  ...++++ ..++
T Consensus       114 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~  172 (194)
T cd03213         114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS  172 (194)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence             01111 22233357788999998  6677888888777776642  3444444 4344

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=95.01  E-value=0.021  Score=50.17  Aligned_cols=32  Identities=19%  Similarity=0.225  Sum_probs=25.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D  301 (403)
                      -.-|+++|.+||||||+|..+.+..    +..++-|
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~g----~~lvaDD   45 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKRG----HRLVADD   45 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcC----CeEEECC
Confidence            4678999999999999999998763    3455444

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=95.00  E-value=0.035  Score=51.96  Aligned_cols=39  Identities=21%  Similarity=0.181  Sum_probs=27.1

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK  308 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~  308 (403)
                      +|.++|+|||||||+|+-+.+....  +.+-=.|.+++.|.
T Consensus         2 iI~i~G~~gsGKstva~~~~~~g~~--~~~~~~d~ik~~l~   40 (227)
T PHA02575          2 LIAISGKKRSGKDTVADFIIENYNA--VKYQLADPIKEILA   40 (227)
T ss_pred             EEEEeCCCCCCHHHHHHHHHhcCCc--EEEehhHHHHHHHH
Confidence            7889999999999999999765331  21222355655553

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=94.99  E-value=0.18  Score=46.87  Aligned_cols=36  Identities=17%  Similarity=0.368  Sum_probs=26.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC--CCccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~ls~D  301 (403)
                      ..++++.|.||+|||+++.+++.+.  ..+..+.++.+
T Consensus        16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e   53 (224)
T TIGR03880        16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE   53 (224)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            5789999999999999999887532  12335566664

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>CHL00195 ycf46 Ycf46; Provisional

Probab=94.98  E-value=0.051  Score=56.85  Aligned_cols=36  Identities=19%  Similarity=0.288  Sum_probs=28.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D  301 (403)
                      .++-|+|.|+||+|||++|+.++.+... .++.++..
T Consensus       258 ~pkGILL~GPpGTGKTllAkaiA~e~~~-~~~~l~~~  293 (489)
T CHL00195        258 TPRGLLLVGIQGTGKSLTAKAIANDWQL-PLLRLDVG  293 (489)
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhCC-CEEEEEhH
Confidence            4678999999999999999999998753 35556443

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=94.98  E-value=0.44  Score=42.26  Aligned_cols=110  Identities=13%  Similarity=0.137  Sum_probs=58.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccHHHHHHhh-cCCCcccCCChHHHHHHH----HH---HHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMK-VPGLLRKHNYSERFQCLM----GR---ANAIFDV  335 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D~ir~~l~-~~g~~~~~~~~~~~~~~~----~~---a~~~~~~  335 (403)
                      ..+++.++|.+||||||+.+.++..++. .+-+.++..   ..+. +.-...... ....+.+.    .+   -++..-.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---~~i~~~~q~~~~~~-~tv~~nl~~~~~~~LS~G~~~rv~  101 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---EDLLFLPQRPYLPL-GTLREQLIYPWDDVLSGGEQQRLA  101 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---ceEEEECCCCcccc-ccHHHHhhccCCCCCCHHHHHHHH
Confidence            3578999999999999999999877542 233333221   0010 000000000 00001110    00   0010111


Q ss_pred             HHHHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCCcEEEEEECC
Q 015668          336 LLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPK  379 (403)
Q Consensus       336 ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~~  379 (403)
                      ++...+.+.+.+|+|-  +++....++.+++.+.+++ ..++++..
T Consensus       102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~-~tiiivsh  146 (166)
T cd03223         102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG-ITVISVGH  146 (166)
T ss_pred             HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhC-CEEEEEeC
Confidence            2233357888999998  5677888887777777764 44544443

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK08181 transposase; Validated

Probab=94.91  E-value=0.15  Score=49.19  Aligned_cols=42  Identities=17%  Similarity=0.258  Sum_probs=30.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHHHHhh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMK  308 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir~~l~  308 (403)
                      .-++++|+||+|||++|..++.+.-  ...++.++..++.+++.
T Consensus       107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~  150 (269)
T PRK08181        107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQ  150 (269)
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHH
Confidence            4589999999999999999875432  22356666676666553

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=94.89  E-value=0.016  Score=50.39  Aligned_cols=26  Identities=35%  Similarity=0.488  Sum_probs=22.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCc
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEK  293 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~  293 (403)
                      +|++||..+|||||+++.|.+++...
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l~~~   27 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINELKRR   27 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhHc
Confidence            68899999999999999998877633

>PF13479 AAA_24: AAA domain

Probab=94.88  E-value=0.057  Score=50.13  Aligned_cols=31  Identities=32%  Similarity=0.485  Sum_probs=25.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      +.-+++.|.||+||||+|..+    +  ..++|++|.
T Consensus         3 ~~~~lIyG~~G~GKTt~a~~~----~--k~l~id~E~   33 (213)
T PF13479_consen    3 PIKILIYGPPGSGKTTLAASL----P--KPLFIDTEN   33 (213)
T ss_pred             ceEEEEECCCCCCHHHHHHhC----C--CeEEEEeCC
Confidence            456889999999999999999    2  267887764

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=94.88  E-value=0.017  Score=51.78  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=19.3

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |+++|.||+||||+.+++.+.+
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            6899999999999999998877

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.88  E-value=0.025  Score=57.75  Aligned_cols=40  Identities=30%  Similarity=0.227  Sum_probs=30.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLIL  304 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D~ir  304 (403)
                      ...+++++|++||||||.+.+++....   .....+++.|..|
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R  264 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR  264 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence            357899999999999999999986431   2346678888744

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=94.88  E-value=0.017  Score=51.12  Aligned_cols=25  Identities=44%  Similarity=0.526  Sum_probs=21.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      ++.++|.+||||||++.++.+.+..
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~~   25 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALKA   25 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4788999999999999999887653

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=94.87  E-value=0.12  Score=55.32  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=29.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      ..+.+.++|.+||||||+++-+...+|..+-+.++.
T Consensus       375 ~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g  410 (588)
T PRK11174        375 AGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKING  410 (588)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECC
Confidence            358899999999999999999998876555666654

>TIGR00101 ureG urease accessory protein UreG

Probab=94.87  E-value=0.035  Score=51.11  Aligned_cols=35  Identities=20%  Similarity=0.256  Sum_probs=26.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCc-cEEEeccH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEK-RYILLGTN  301 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~-~~v~ls~D  301 (403)
                      ..|.++|.+||||||+.+++...++.. +..++..|
T Consensus         2 ~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d   37 (199)
T TIGR00101         2 LKIGVAGPVGSGKTALIEALTRALRQKYQLAVITND   37 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCC
Confidence            468899999999999999998875432 34444444

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=94.85  E-value=0.12  Score=51.07  Aligned_cols=38  Identities=16%  Similarity=0.190  Sum_probs=27.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHH--hCC------CccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVK--DHP------EKRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~--~~~------~~~~v~ls~D~  302 (403)
                      ...++.++|.||||||+++.+++-  .++      +...+.|+++.
T Consensus        95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~  140 (313)
T TIGR02238        95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG  140 (313)
T ss_pred             CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence            358899999999999999988763  222      23467776654

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>CHL00176 ftsH cell division protein; Validated

Probab=94.83  E-value=0.27  Score=53.20  Aligned_cols=37  Identities=19%  Similarity=0.308  Sum_probs=28.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i  303 (403)
                      +.-|+|.|+||+|||++|+.++.+.. ..++.++...+
T Consensus       216 p~gVLL~GPpGTGKT~LAralA~e~~-~p~i~is~s~f  252 (638)
T CHL00176        216 PKGVLLVGPPGTGKTLLAKAIAGEAE-VPFFSISGSEF  252 (638)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC-CCeeeccHHHH
Confidence            56699999999999999999998764 23666655443

>cd03112 CobW_like The function of this protein family is unkown

Probab=94.81  E-value=0.035  Score=49.05  Aligned_cols=25  Identities=24%  Similarity=0.423  Sum_probs=21.8

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      +++++|.+|||||||.+.+.+....
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~~~~   26 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTEQHG   26 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhcccC
Confidence            6789999999999999999887543

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=94.80  E-value=0.23  Score=54.29  Aligned_cols=28  Identities=21%  Similarity=0.279  Sum_probs=24.7

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +-...+|++|.+|.||||+|+.+++.+.
T Consensus        36 RL~HAyLFtGPpGvGKTTlAriLAKaLn   63 (830)
T PRK07003         36 RLHHAYLFTGTRGVGKTTLSRIFAKALN   63 (830)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3467889999999999999999998875

>PRK05636 replicative DNA helicase; Provisional

Probab=94.78  E-value=0.13  Score=54.19  Aligned_cols=104  Identities=16%  Similarity=0.252  Sum_probs=54.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH----HHHHHhhc--CCCc----cc-CCChHHHHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN----LILEQMKV--PGLL----RK-HNYSERFQCLMGRAN  330 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D----~ir~~l~~--~g~~----~~-~~~~~~~~~~~~~a~  330 (403)
                      ..++|++.|.||.||||||-.++....   .+...++|.+    .+..++..  .+..    +. .-....|+.+.+.+.
T Consensus       264 ~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~~~~a~~  343 (505)
T PRK05636        264 GGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQRLG  343 (505)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence            468999999999999999887764321   2335566665    34444321  1110    00 001123332222211


Q ss_pred             HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEE
Q 015668          331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVF  377 (403)
Q Consensus       331 ~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l  377 (403)
                          .     +.+...+|-|..+++-..-+..++.++..+.+.+|++
T Consensus       344 ----~-----l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvI  381 (505)
T PRK05636        344 ----K-----IAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVV  381 (505)
T ss_pred             ----H-----HhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence                1     2445567777778776544445555554333344444

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=94.76  E-value=0.026  Score=54.08  Aligned_cols=39  Identities=21%  Similarity=0.391  Sum_probs=29.4

Q ss_pred             CCCceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccH
Q 015668          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTN  301 (403)
Q Consensus       263 ~~~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D  301 (403)
                      ...+.+|+++|+.|||||||.++|...+..+  .-.+||.|
T Consensus        16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLD   56 (366)
T KOG1532|consen   16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLD   56 (366)
T ss_pred             ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCC
Confidence            3567899999999999999999986544332  13567777

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.75  E-value=0.1  Score=55.06  Aligned_cols=40  Identities=20%  Similarity=0.315  Sum_probs=31.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~  306 (403)
                      +.=|+|||+||+|||-+|+..+.+.. -.++.|-.-+++.+
T Consensus       545 PsGvLL~GPPGCGKTLlAKAVANEag-~NFisVKGPELlNk  584 (802)
T KOG0733|consen  545 PSGVLLCGPPGCGKTLLAKAVANEAG-ANFISVKGPELLNK  584 (802)
T ss_pred             CCceEEeCCCCccHHHHHHHHhhhcc-CceEeecCHHHHHH
Confidence            77899999999999999999998764 24777755555443

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=94.74  E-value=0.18  Score=56.01  Aligned_cols=28  Identities=18%  Similarity=0.190  Sum_probs=24.7

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +-...+|+.|.+|+||||+|+.+++.+.
T Consensus        35 ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~   62 (824)
T PRK07764         35 RINHAYLFSGPRGCGKTSSARILARSLN   62 (824)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4467889999999999999999998875

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=94.73  E-value=0.028  Score=56.70  Aligned_cols=29  Identities=28%  Similarity=0.315  Sum_probs=26.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCc
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK  293 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~  293 (403)
                      .+.+|.++|++||||||++.++.+.+..+
T Consensus         4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~   32 (369)
T PRK14490          4 HPFEIAFCGYSGSGKTTLITALVRRLSER   32 (369)
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHHhhC
Confidence            47899999999999999999999988754

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=94.72  E-value=0.25  Score=44.51  Aligned_cols=35  Identities=20%  Similarity=0.257  Sum_probs=25.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE  305 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~  305 (403)
                      ||-+.+..|||++|+|++|++.+.   +-.++.+.+.+
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg---~~~~d~~ii~~   35 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLG---YPYYDREIIEE   35 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT-----EE-HHHHHH
T ss_pred             CEEECCCCCCChHHHHHHHHHHcC---CccCCHHHHHH
Confidence            566789999999999999999997   77787755443

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=94.72  E-value=0.028  Score=55.02  Aligned_cols=34  Identities=24%  Similarity=0.237  Sum_probs=31.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      +.+|+++|+.|||||-+|-.|++.++   ..+||.|.
T Consensus         3 ~~~i~I~GPTAsGKT~lai~LAk~~~---~eIIs~DS   36 (308)
T COG0324           3 PKLIVIAGPTASGKTALAIALAKRLG---GEIISLDS   36 (308)
T ss_pred             ccEEEEECCCCcCHHHHHHHHHHHcC---CcEEecch
Confidence            67999999999999999999999998   57899996

>PRK06835 DNA replication protein DnaC; Validated

Probab=94.72  E-value=0.33  Score=48.29  Aligned_cols=41  Identities=22%  Similarity=0.304  Sum_probs=31.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQM  307 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l  307 (403)
                      .-++++|.||+|||++|..++.++-.  ..++.++.+++...+
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l  226 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL  226 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence            66899999999999999998876532  246677777766655

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.71  E-value=0.026  Score=57.28  Aligned_cols=40  Identities=20%  Similarity=0.141  Sum_probs=31.3

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC------CccEEEeccHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP------EKRYILLGTNLI  303 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~------~~~~v~ls~D~i  303 (403)
                      ..+.+|+++|++|+||||.+.+++..+.      .+...+++.|..
T Consensus       172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~  217 (388)
T PRK12723        172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY  217 (388)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence            3468999999999999999999987543      234677888863

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=94.68  E-value=0.035  Score=52.29  Aligned_cols=36  Identities=11%  Similarity=0.205  Sum_probs=26.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC--CCccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~ls~D  301 (403)
                      ..++++.|.||+||||++.+++...  +++..+.++.+
T Consensus        24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e   61 (230)
T PRK08533         24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ   61 (230)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence            5699999999999999987765543  22345666655

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=94.68  E-value=0.031  Score=50.02  Aligned_cols=34  Identities=21%  Similarity=0.317  Sum_probs=25.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      ++++.|.||+|||+++.+++.+..  ++..+.++.+
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e   36 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE   36 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence            368899999999999998865431  2346677764

A related protein is found in archaea.

>cd04163 Era Era subfamily

Probab=94.68  E-value=0.028  Score=48.24  Aligned_cols=24  Identities=29%  Similarity=0.443  Sum_probs=21.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ...|+++|.|||||||+.+++...
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999999754

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=94.65  E-value=0.028  Score=55.09  Aligned_cols=38  Identities=16%  Similarity=0.274  Sum_probs=28.9

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTN  301 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D  301 (403)
                      ....+|.++|+|||||||++..+...+..  ..+.+|+.|
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D   71 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD   71 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            45789999999999999999998765432  235566666

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=94.65  E-value=0.072  Score=58.67  Aligned_cols=39  Identities=23%  Similarity=0.347  Sum_probs=30.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE  305 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~  305 (403)
                      +.-|+|.|+||+|||++|+.++.+... .++.++..++..
T Consensus       487 ~~giLL~GppGtGKT~lakalA~e~~~-~fi~v~~~~l~~  525 (733)
T TIGR01243       487 PKGVLLFGPPGTGKTLLAKAVATESGA-NFIAVRGPEILS  525 (733)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhcCC-CEEEEehHHHhh
Confidence            456899999999999999999998753 466776655443

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.64  E-value=0.22  Score=55.44  Aligned_cols=28  Identities=21%  Similarity=0.287  Sum_probs=25.3

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +-+..++++|+||+||||+|+.+++.+.
T Consensus        36 rl~HAyLFtGPpGtGKTTLARiLAk~Ln   63 (944)
T PRK14949         36 RLHHAYLFTGTRGVGKTSLARLFAKGLN   63 (944)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence            4578889999999999999999999886

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily

Probab=94.64  E-value=0.28  Score=50.32  Aligned_cols=37  Identities=19%  Similarity=0.304  Sum_probs=28.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D  301 (403)
                      ..+++++.|.||+|||+||-.++....   ...+.++|.+
T Consensus       193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlE  232 (421)
T TIGR03600       193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE  232 (421)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            368999999999999999988874332   2346677754

Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=94.63  E-value=0.025  Score=52.27  Aligned_cols=26  Identities=27%  Similarity=0.502  Sum_probs=19.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      .=++|.|.||+|||++|+++..-+|.
T Consensus        23 h~lLl~GppGtGKTmlA~~l~~lLP~   48 (206)
T PF01078_consen   23 HHLLLIGPPGTGKTMLARRLPSLLPP   48 (206)
T ss_dssp             --EEEES-CCCTHHHHHHHHHHCS--
T ss_pred             CCeEEECCCCCCHHHHHHHHHHhCCC
Confidence            45789999999999999999988874

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK13764 ATPase; Provisional

Probab=94.63  E-value=0.14  Score=54.73  Aligned_cols=36  Identities=22%  Similarity=0.369  Sum_probs=27.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D  301 (403)
                      ...|+++|.|||||||+++.++...+....+++.-+
T Consensus       257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiE  292 (602)
T PRK13764        257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTME  292 (602)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEEC
Confidence            456899999999999999999988765433443333

>TIGR00665 DnaB replicative DNA helicase

Probab=94.62  E-value=0.41  Score=49.26  Aligned_cols=37  Identities=16%  Similarity=0.354  Sum_probs=27.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D  301 (403)
                      ..+++++.|.||+|||||+..++....   ......+|.+
T Consensus       194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlE  233 (434)
T TIGR00665       194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLE  233 (434)
T ss_pred             CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence            368999999999999999988765421   2345667765

This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=94.61  E-value=0.2  Score=50.57  Aligned_cols=35  Identities=26%  Similarity=0.381  Sum_probs=26.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC----ccEEEecc
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE----KRYILLGT  300 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~----~~~v~ls~  300 (403)
                      +..+++.|+||+||||+++.+++++..    -.++.++.
T Consensus        55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~   93 (394)
T PRK00411         55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINC   93 (394)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEEC
Confidence            455789999999999999999876532    22566654

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.58  E-value=0.21  Score=52.59  Aligned_cols=39  Identities=26%  Similarity=0.301  Sum_probs=29.9

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLI  303 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~i  303 (403)
                      ...+|+++|++|+||||++.+|+..+.    .+...+++.|..
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDty  391 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQ  391 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence            468999999999999999999876432    234667887753

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.56  E-value=0.34  Score=49.40  Aligned_cols=28  Identities=29%  Similarity=0.275  Sum_probs=24.7

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +-+..++++|+||.||||+|+.+++.+.
T Consensus        36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~   63 (397)
T PRK14955         36 RVGHGYIFSGLRGVGKTTAARVFAKAVN   63 (397)
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence            4567899999999999999999998874

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=94.56  E-value=0.23  Score=47.33  Aligned_cols=97  Identities=15%  Similarity=0.104  Sum_probs=54.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN  346 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~  346 (403)
                      .+|++.|++|||||+-++.+. ++.   |..+  |.+=-              .-+....+.+    .  .......+--
T Consensus         2 ~lvIVTGlSGAGKsvAl~~lE-DlG---yycv--DNLPp--------------~Llp~~~~~~----~--~~~~~~~kvA   55 (286)
T COG1660           2 RLVIVTGLSGAGKSVALRVLE-DLG---YYCV--DNLPP--------------QLLPKLADLM----L--TLESRITKVA   55 (286)
T ss_pred             cEEEEecCCCCcHHHHHHHHH-hcC---eeee--cCCCH--------------HHHHHHHHHH----h--hcccCCceEE
Confidence            689999999999998777764 443   6555  43100              0011111111    0  0000123446


Q ss_pred             EEEeCCCCC-HHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHH
Q 015668          347 FIIDQTNVF-KSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVK  389 (403)
Q Consensus       347 vIlD~Tn~~-~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~  389 (403)
                      |++|--+.. .+.-..++..+++.+  .+.++++++. +++++|-+.
T Consensus        56 v~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~e  102 (286)
T COG1660          56 VVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSE  102 (286)
T ss_pred             EEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhh
Confidence            888885542 122233455566553  4788899997 788888764

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=94.56  E-value=0.037  Score=53.07  Aligned_cols=113  Identities=18%  Similarity=0.201  Sum_probs=56.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCc-c-EEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK-R-YILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT  343 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~-~-~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~  343 (403)
                      ...|+++|.+||||||+.+.+....+.. . .+.+. | -. ++...+... ...... ...     .-+.+++..+++.
T Consensus       127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE-d-~~-E~~l~~~~~-~~~~~~-~~~-----~~~~~~l~~~LR~  196 (270)
T PF00437_consen  127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE-D-PP-ELRLPGPNQ-IQIQTR-RDE-----ISYEDLLKSALRQ  196 (270)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE-S-SS--S--SCSSE-EEEEEE-TTT-----BSHHHHHHHHTTS
T ss_pred             ceEEEEECCCccccchHHHHHhhhccccccceEEec-c-cc-ceeecccce-EEEEee-cCc-----ccHHHHHHHHhcC
Confidence            5899999999999999999999988865 3 33332 2 11 111112100 000000 000     0122345556665


Q ss_pred             CC-eEEEeCCCCCHHHHHHHHHHHhcCCc--EEEEEECChHHHHHHHHHh
Q 015668          344 PR-NFIIDQTNVFKSARKRKLRLFVNFRK--IAVVVFPKPEDLKIRSVKR  390 (403)
Q Consensus       344 g~-~vIlD~Tn~~~~~R~~~~~~~~~~~~--~~vv~l~~pe~~~~R~~~R  390 (403)
                      +- .+|+.-.--.....  .++.+..-+.  +.-+.-.++.....|...=
T Consensus       197 ~pD~iiigEiR~~e~~~--~~~a~~tGh~~~~tT~Ha~s~~~~i~Rl~~l  244 (270)
T PF00437_consen  197 DPDVIIIGEIRDPEAAE--AIQAANTGHLGSLTTLHANSAEDAIERLADL  244 (270)
T ss_dssp             --SEEEESCE-SCHHHH--HHHHHHTT-EEEEEEEE-SSHHHHHHHHHHH
T ss_pred             CCCcccccccCCHhHHH--HHHhhccCCceeeeeeecCCHHHHHHHHHHH
Confidence            54 45555443333332  2433333333  3456667778888888753

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=94.53  E-value=0.023  Score=62.37  Aligned_cols=34  Identities=18%  Similarity=0.285  Sum_probs=28.6

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir  304 (403)
                      +|.+.|+|||||||+|+.|++.++   +.++++..+.
T Consensus         3 ~i~I~G~~GsGKST~ak~la~~l~---~~~~~~g~~~   36 (712)
T PRK09518          3 IVAIDGPAGVGKSSVSRALAQYLG---YAYLDTGAMY   36 (712)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CcEeecCcEe
Confidence            688899999999999999999986   6677666543

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=94.52  E-value=0.029  Score=46.32  Aligned_cols=21  Identities=24%  Similarity=0.457  Sum_probs=19.2

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.||+||||+.+.|...
T Consensus         2 V~iiG~~~~GKSTlin~l~~~   22 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGK   22 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            688999999999999999964

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=94.52  E-value=0.034  Score=55.02  Aligned_cols=34  Identities=18%  Similarity=0.224  Sum_probs=26.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D  301 (403)
                      .-|+|.|+||+||||+|+.+++.+... ++.|+.+
T Consensus        65 ~~ilL~G~pGtGKTtla~~lA~~l~~~-~~rV~~~   98 (327)
T TIGR01650        65 RRVMVQGYHGTGKSTHIEQIAARLNWP-CVRVNLD   98 (327)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHHCCC-eEEEEec
Confidence            348899999999999999999988643 4444433

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=94.51  E-value=0.14  Score=48.89  Aligned_cols=103  Identities=17%  Similarity=0.245  Sum_probs=56.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH----HHHHHhh--cCCCcc----cCCC-hHHHHHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN----LILEQMK--VPGLLR----KHNY-SERFQCLMGRANA  331 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D----~ir~~l~--~~g~~~----~~~~-~~~~~~~~~~a~~  331 (403)
                      .+++++.|.||+|||+||..++....   ...+..+|.+    .+..++.  ..+..-    .... ...|+    ++.+
T Consensus        19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~----~~~~   94 (259)
T PF03796_consen   19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFE----RLQA   94 (259)
T ss_dssp             T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHH----HHHH
T ss_pred             CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHH----HHHH
Confidence            57999999999999999988865321   1347778775    3333332  123210    0000 11111    1111


Q ss_pred             HHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcC-CcEEEEEE
Q 015668          332 IFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNF-RKIAVVVF  377 (403)
Q Consensus       332 ~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~-~~~~vv~l  377 (403)
                          ... .+.+...+|.|....+.+.-+..++.++.. .++.+|++
T Consensus        95 ----~~~-~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~I  136 (259)
T PF03796_consen   95 ----AAE-KLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFI  136 (259)
T ss_dssp             ----HHH-HHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEE
T ss_pred             ----HHH-HHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEe
Confidence                111 224445777787777877776677777654 45655554

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=94.50  E-value=0.16  Score=53.58  Aligned_cols=36  Identities=19%  Similarity=0.123  Sum_probs=28.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEecc
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGT  300 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~  300 (403)
                      ..+.+.++|.+||||||+++-+....+. ++-+.++.
T Consensus       360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g  396 (529)
T TIGR02868       360 PGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDG  396 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence            3688999999999999999999876643 34565653

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=94.50  E-value=0.027  Score=49.12  Aligned_cols=24  Identities=33%  Similarity=0.504  Sum_probs=20.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      +=||++|..||||||+++.|....
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~   25 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEE   25 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCC
Confidence            348999999999999999997654

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=94.48  E-value=0.054  Score=51.74  Aligned_cols=38  Identities=21%  Similarity=0.427  Sum_probs=28.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~  302 (403)
                      .-.++++.|.||||||+|+.+++.+...  ...+.+++++
T Consensus        22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e   61 (260)
T COG0467          22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE   61 (260)
T ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence            4579999999999999999988654332  2356666664

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=94.47  E-value=0.35  Score=47.97  Aligned_cols=28  Identities=21%  Similarity=0.299  Sum_probs=24.0

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      .-+..++++|+||.||||+|+.+++.+.
T Consensus        34 ~~~~~~Ll~G~~G~GKt~~a~~la~~l~   61 (355)
T TIGR02397        34 RIAHAYLFSGPRGTGKTSIARIFAKALN   61 (355)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3467889999999999999999988764

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=94.45  E-value=0.047  Score=50.63  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=28.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i  303 (403)
                      -+|.+=|+.||||||.|+.+++.+.   +.+|++-.+
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg---~~yldTGam   38 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLG---FHYLDTGAM   38 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhC---CCeecccHH
Confidence            4566679999999999999999997   888887654

>PRK09165 replicative DNA helicase; Provisional

Probab=94.43  E-value=0.35  Score=50.86  Aligned_cols=24  Identities=25%  Similarity=0.470  Sum_probs=20.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~  288 (403)
                      ...++++.|.||.||||||-.++.
T Consensus       216 ~g~livIaarpg~GKT~~al~ia~  239 (497)
T PRK09165        216 PSDLIILAGRPSMGKTALATNIAF  239 (497)
T ss_pred             CCceEEEEeCCCCChHHHHHHHHH
Confidence            358999999999999999876543

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.43  E-value=0.4  Score=51.75  Aligned_cols=28  Identities=25%  Similarity=0.196  Sum_probs=25.0

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +-+..++++|+||.||||+|+.+++.+.
T Consensus        35 rl~HAyLF~GPpGvGKTTlAriLAK~Ln   62 (702)
T PRK14960         35 RLHHAYLFTGTRGVGKTTIARILAKCLN   62 (702)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4468999999999999999999998875

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.42  E-value=0.18  Score=49.68  Aligned_cols=26  Identities=19%  Similarity=0.446  Sum_probs=24.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      .++|++-|+||.|||++-+.|++.+.
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLS  202 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLS  202 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhhe
Confidence            68999999999999999999998875

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=94.41  E-value=0.028  Score=47.71  Aligned_cols=34  Identities=29%  Similarity=0.407  Sum_probs=27.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls  299 (403)
                      .+++.++|.+||||||+.+.++...+ ..+.+.++
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~   45 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILIN   45 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEET
T ss_pred             CCEEEEEccCCCccccceeeecccccccccccccc
Confidence            57899999999999999999987764 23455554

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=94.41  E-value=0.039  Score=59.17  Aligned_cols=36  Identities=22%  Similarity=0.318  Sum_probs=28.5

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      ...++.||||+||.||||+|.-+++.-.. .++-||.
T Consensus       324 P~kKilLL~GppGlGKTTLAHViAkqaGY-sVvEINA  359 (877)
T KOG1969|consen  324 PPKKILLLCGPPGLGKTTLAHVIAKQAGY-SVVEINA  359 (877)
T ss_pred             CccceEEeecCCCCChhHHHHHHHHhcCc-eEEEecc
Confidence            35789999999999999999999988652 2444554

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=94.40  E-value=0.045  Score=53.61  Aligned_cols=33  Identities=15%  Similarity=0.269  Sum_probs=29.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      ..+|+++|+.|||||.+|-++++.+    ..+||.|.
T Consensus         4 ~~ii~I~GpTasGKS~LAl~LA~~~----~eIIsaDS   36 (300)
T PRK14729          4 NKIVFIFGPTAVGKSNILFHFPKGK----AEIINVDS   36 (300)
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC----CcEEeccH
Confidence            4589999999999999999999984    37899996

>PRK06321 replicative DNA helicase; Provisional

Probab=94.39  E-value=0.33  Score=50.65  Aligned_cols=42  Identities=17%  Similarity=0.301  Sum_probs=30.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC---CCccEEEeccH----HHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTN----LILEQM  307 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~---~~~~~v~ls~D----~ir~~l  307 (403)
                      ..+|++.|-||.|||+||-.++...   ..+...++|.+    .+.++|
T Consensus       226 G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rl  274 (472)
T PRK06321        226 SNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRI  274 (472)
T ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHH
Confidence            5899999999999999998887643   12345667665    444444

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=94.38  E-value=0.17  Score=53.92  Aligned_cols=103  Identities=16%  Similarity=0.203  Sum_probs=59.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEe--------ccHHHHHHhhc--------CCCcccC-CChH---HHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILL--------GTNLILEQMKV--------PGLLRKH-NYSE---RFQ  323 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~l--------s~D~ir~~l~~--------~g~~~~~-~~~~---~~~  323 (403)
                      ..+.+.++|.+||||||+++-+.+-+.. .+-+.+        +.+.+|+.+..        .|..+++ .+..   .-+
T Consensus       354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~e  433 (567)
T COG1132         354 PGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDE  433 (567)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHH
Confidence            3577889999999999999999987764 334444        22345666541        1111110 0110   113


Q ss_pred             HHHHHHHHH-HHHHHHHHhcCCCeEEEe--CCCCCHHHHHHHHHHHhcC
Q 015668          324 CLMGRANAI-FDVLLSRASRTPRNFIID--QTNVFKSARKRKLRLFVNF  369 (403)
Q Consensus       324 ~~~~~a~~~-~~~ll~~al~~g~~vIlD--~Tn~~~~~R~~~~~~~~~~  369 (403)
                      ++.+.++.. +.+.+... -+|.+.++.  ..+++.-+|++ +..++.+
T Consensus       434 ei~~a~k~a~~~d~I~~l-p~g~dt~vge~G~~LSgGQrQr-laiARal  480 (567)
T COG1132         434 EIEEALKLANAHEFIANL-PDGYDTIVGERGVNLSGGQRQR-LAIARAL  480 (567)
T ss_pred             HHHHHHHHhChHHHHHhC-cccccceecCCCccCCHHHHHH-HHHHHHH
Confidence            344444322 33344332 557888886  47888888886 6666654

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.38  E-value=0.35  Score=51.38  Aligned_cols=28  Identities=25%  Similarity=0.206  Sum_probs=24.4

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +-+..++++|+||+||||+|+.+++.+.
T Consensus        36 rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~   63 (546)
T PRK14957         36 KVHHAYLFTGTRGVGKTTLGRLLAKCLN   63 (546)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3457789999999999999999998765

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=94.37  E-value=0.037  Score=46.44  Aligned_cols=33  Identities=21%  Similarity=0.258  Sum_probs=25.7

Q ss_pred             EEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      |++.|.+|+||||++..++..+.  .+++.+++.|
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D   36 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDAD   36 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence            78999999999999988876543  2346777776

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=94.33  E-value=0.33  Score=53.51  Aligned_cols=22  Identities=36%  Similarity=0.430  Sum_probs=19.7

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      ++++|+||.|||++|+.++..+
T Consensus       206 ~lL~G~pG~GKT~l~~~la~~~  227 (731)
T TIGR02639       206 PLLVGEPGVGKTAIAEGLALRI  227 (731)
T ss_pred             eEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999998865

>cd03114 ArgK-like The function of this protein family is unkown

Probab=94.32  E-value=0.038  Score=48.36  Aligned_cols=34  Identities=26%  Similarity=0.487  Sum_probs=25.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      ++.++|.+||||||++..+...+.  ..++.++..|
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D   36 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAID   36 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence            377899999999999998876542  2346666656

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd00154 Rab Rab family

Probab=94.27  E-value=0.033  Score=47.34  Aligned_cols=22  Identities=23%  Similarity=0.493  Sum_probs=19.3

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |+++|.|+|||||+..++....
T Consensus         3 i~~~G~~~~GKStl~~~l~~~~   24 (159)
T cd00154           3 IVLIGDSGVGKTSLLLRFVDGK   24 (159)
T ss_pred             EEEECCCCCCHHHHHHHHHhCc
Confidence            6889999999999999997543

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PRK13768 GTPase; Provisional

Probab=94.22  E-value=0.04  Score=52.66  Aligned_cols=37  Identities=19%  Similarity=0.218  Sum_probs=27.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNL  302 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~  302 (403)
                      +.++++.|.+||||||++..++..+..  +...+++.|.
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~   40 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP   40 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence            467899999999999998887765532  3466676663

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=94.22  E-value=0.033  Score=49.42  Aligned_cols=21  Identities=19%  Similarity=0.469  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.||+||||+++++...
T Consensus         4 v~l~G~~g~GKTtl~~~~~~~   24 (180)
T cd04137           4 IAVLGSRSVGKSSLTVQFVEG   24 (180)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            679999999999999999854

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PRK08506 replicative DNA helicase; Provisional

Probab=94.18  E-value=0.51  Score=49.30  Aligned_cols=37  Identities=16%  Similarity=0.274  Sum_probs=28.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      ...++++.|.||.|||+||-.++....  .+.+.++|.+
T Consensus       191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlE  229 (472)
T PRK08506        191 KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLE  229 (472)
T ss_pred             CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCc
Confidence            368999999999999999988865432  2346677765

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=94.18  E-value=0.43  Score=51.06  Aligned_cols=28  Identities=25%  Similarity=0.254  Sum_probs=24.6

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +-+..+++.|+||+||||+|+.+++.+.
T Consensus        36 rl~hA~Lf~GP~GvGKTTlA~~lAk~L~   63 (605)
T PRK05896         36 KLTHAYIFSGPRGIGKTSIAKIFAKAIN   63 (605)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            4467899999999999999999998875

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=94.18  E-value=0.049  Score=53.99  Aligned_cols=112  Identities=18%  Similarity=0.109  Sum_probs=56.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhC----CCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR  342 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~----~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~  342 (403)
                      .-|+++|.+||||||+.+.|....    +..+.+.|  ++-.+ |..... .......  ...     -.+..++..+++
T Consensus       145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivti--Ed~~E-l~~~~~-n~v~l~~--~~~-----~~~~~lv~~aLR  213 (323)
T PRK13833        145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVIL--EDTAE-IQCAAE-NAVALHT--SDT-----VDMARLLKSTMR  213 (323)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEe--cCCcc-cccCCC-CEEEecc--CCC-----cCHHHHHHHHhC
Confidence            467899999999999999998875    33333333  32222 211110 0000000  000     013345666677


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHh
Q 015668          343 TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKR  390 (403)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~pe~~~~R~~~R  390 (403)
                      .+-..|+=.=--..++.. .++.+..-+  -+.-+.-+++.+.++|...-
T Consensus       214 ~~PD~IivGEiRg~ea~~-~l~a~~tGh~G~itTiHA~s~~~a~~Rl~~l  262 (323)
T PRK13833        214 LRPDRIIVGEVRDGAALT-LLKAWNTGHPGGVTTIHSNTAMSALRRLEQL  262 (323)
T ss_pred             CCCCEEEEeecCCHHHHH-HHHHHcCCCCceEEEECCCCHHHHHHHHHHH
Confidence            655555433112233322 343333223  25556667777777888754

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=94.17  E-value=0.038  Score=56.39  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=26.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEe
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL  298 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~l  298 (403)
                      +.-|+|+|+||+||||+|+.++..+.. .++.+
T Consensus        47 p~~ILLiGppG~GKT~lAraLA~~l~~-~fi~v   78 (441)
T TIGR00390        47 PKNILMIGPTGVGKTEIARRLAKLANA-PFIKV   78 (441)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCC-eEEEe
Confidence            466899999999999999999998763 24444

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK08006 replicative DNA helicase; Provisional

Probab=94.15  E-value=0.21  Score=52.17  Aligned_cols=37  Identities=19%  Similarity=0.447  Sum_probs=27.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D  301 (403)
                      ..++|++.|-||.|||+||-.++....   .+.+.++|.+
T Consensus       223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlE  262 (471)
T PRK08006        223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLE  262 (471)
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence            368999999999999999888764421   2346677765

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=94.15  E-value=0.03  Score=52.00  Aligned_cols=22  Identities=41%  Similarity=0.738  Sum_probs=19.7

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |++.|.|||||||+.+++....
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~   22 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDR   22 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhc
Confidence            4678999999999999999883

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=94.14  E-value=0.032  Score=59.00  Aligned_cols=27  Identities=19%  Similarity=0.319  Sum_probs=24.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      -.+++|+|+||+||||+|+.+++.+..
T Consensus       103 ~~IL~LvGPpG~GKSsLa~~la~~le~  129 (644)
T PRK15455        103 KQILYLLGPVGGGKSSLAERLKSLMER  129 (644)
T ss_pred             CceEEEecCCCCCchHHHHHHHHHHHh
Confidence            369999999999999999999987764

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=94.13  E-value=0.3  Score=47.51  Aligned_cols=24  Identities=29%  Similarity=0.410  Sum_probs=21.3

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      .++++|.||+||||+++.+++++.
T Consensus        40 ~~ll~G~~G~GKt~~~~~l~~~l~   63 (319)
T PRK00440         40 HLLFAGPPGTGKTTAALALARELY   63 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHc
Confidence            368999999999999999998764

>PRK07004 replicative DNA helicase; Provisional

Probab=94.11  E-value=0.42  Score=49.80  Aligned_cols=37  Identities=16%  Similarity=0.230  Sum_probs=27.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC---CCccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~---~~~~~v~ls~D  301 (403)
                      ..+++++.|-||+|||+||..++...   ..+...++|.+
T Consensus       212 ~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlE  251 (460)
T PRK07004        212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSME  251 (460)
T ss_pred             CCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            36899999999999999998876432   12335667765

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=94.11  E-value=0.049  Score=57.40  Aligned_cols=27  Identities=22%  Similarity=0.327  Sum_probs=24.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ...+++|+|+|||||||.++.|++++.
T Consensus        44 ~~~iLlLtGP~G~GKtttv~~La~elg   70 (519)
T PF03215_consen   44 PKRILLLTGPSGCGKTTTVKVLAKELG   70 (519)
T ss_pred             CcceEEEECCCCCCHHHHHHHHHHHhC
Confidence            356999999999999999999999986

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=94.10  E-value=0.24  Score=45.33  Aligned_cols=21  Identities=29%  Similarity=0.348  Sum_probs=19.8

Q ss_pred             eEEEEEccCCCChhHHHHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWV  287 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~  287 (403)
                      ++++++|++||||||+.+.+.
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            799999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=94.10  E-value=0.043  Score=56.09  Aligned_cols=33  Identities=24%  Similarity=0.329  Sum_probs=26.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls  299 (403)
                      +.-|+|+|+||+||||+|+.+++.+.. .++.++
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l~~-~fi~vD   82 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLANA-PFIKVE   82 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCC-hheeec
Confidence            467899999999999999999988752 355553

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=94.09  E-value=0.038  Score=46.61  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=19.6

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |+++|.+||||||+..++....
T Consensus         4 i~~~G~~~~GKstl~~~l~~~~   25 (161)
T TIGR00231         4 IVIVGDPNVGKSTLLNRLLGNK   25 (161)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6789999999999999998654

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=94.09  E-value=0.062  Score=58.46  Aligned_cols=39  Identities=26%  Similarity=0.284  Sum_probs=33.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      ..+|.+.|++||||||+|+.+++.+.   +.+++++.+...+
T Consensus       442 ~~~i~i~g~~~~gks~~~~~l~~~~~---~~~~~~~~~~~~~  480 (661)
T PRK11860        442 VPVICIDGPTASGKGTVAARVAEALG---YHYLDSGALYRLT  480 (661)
T ss_pred             cceEEeeCCCCCCHHHHHHHHHHHhC---CeEecHHHhhhHH
Confidence            44788899999999999999999997   7889888775554

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=94.06  E-value=0.14  Score=45.38  Aligned_cols=43  Identities=19%  Similarity=0.254  Sum_probs=30.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      -.++|.+.|.--|||||+|++|++.++....-...++-+.+++
T Consensus         7 F~K~VailG~ESsGKStLv~kLA~~fnt~~~wEY~Re~v~~~l   49 (187)
T COG3172           7 FVKTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFEHL   49 (187)
T ss_pred             hheeeeeecCcccChHHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence            3678889999999999999999998774322223334444444

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=94.00  E-value=0.061  Score=53.25  Aligned_cols=114  Identities=15%  Similarity=0.106  Sum_probs=57.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC----CCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS  341 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~----~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al  341 (403)
                      ...|+++|.+||||||+++.++...    +..+.+.|  ++-. ++..... ....+..  ..     ..-+..++..++
T Consensus       148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtI--Ed~~-El~~~~~-~~v~~~~--~~-----~~~~~~ll~~aL  216 (319)
T PRK13894        148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFII--EDTG-EIQCAAE-NYVQYHT--SI-----DVNMTALLKTTL  216 (319)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEE--cCCC-ccccCCC-CEEEEec--CC-----CCCHHHHHHHHh
Confidence            4678899999999999999998763    33334444  2211 1211110 0000000  00     011334556666


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHhc
Q 015668          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRF  391 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~pe~~~~R~~~R~  391 (403)
                      +.+-+.|+=.=--..++.. +++.+..-+  -+.-+.-+++...+.|...-.
T Consensus       217 R~~PD~IivGEiR~~Ea~~-~l~A~~tGh~G~~tTiHa~s~~~ai~Rl~~l~  267 (319)
T PRK13894        217 RMRPDRILVGEVRGPEALD-LLMAWNTGHEGGAATLHANNAKAGLDRLKSLI  267 (319)
T ss_pred             cCCCCEEEEeccCCHHHHH-HHHHHHcCCCceEEEECCCCHHHHHHHHHHHH
Confidence            7655554433222333332 344433323  255566677777778776544

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=93.99  E-value=0.06  Score=53.62  Aligned_cols=127  Identities=17%  Similarity=0.113  Sum_probs=63.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCc-cEEEeccHHHHHHhhcCCCcccCC-ChHHHHHHHHHHHHHHHHHHHHHhcC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK-RYILLGTNLILEQMKVPGLLRKHN-YSERFQCLMGRANAIFDVLLSRASRT  343 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~-~~v~ls~D~ir~~l~~~g~~~~~~-~~~~~~~~~~~a~~~~~~ll~~al~~  343 (403)
                      ...|+++|.+||||||+.+.+....+.. +.+.|  ++..+ +.......... ......  ..+..--+..++..+++.
T Consensus       160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~ti--Ed~~E-l~l~~~~n~~~~~~~~~~--~~~~~~~~~~ll~~~LR~  234 (332)
T PRK13900        160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITV--EDARE-IVLSNHPNRVHLLASKGG--QGRAKVTTQDLIEACLRL  234 (332)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEe--cCCCc-cccccCCCEEEEEecCCC--CCcCcCcHHHHHHHHhcc
Confidence            4678999999999999999999988853 23333  32222 21111000000 000000  000001123456666675


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHHHhcCCc--EEEEEECChHHHHHHHHHhccccCccc
Q 015668          344 PRNFIIDQTNVFKSARKRKLRLFVNFRK--IAVVVFPKPEDLKIRSVKRFKEMGKEQ  398 (403)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~~--~~vv~l~~pe~~~~R~~~R~~~~g~~V  398 (403)
                      .-.+|+=.---..+... +++.+..-|.  +.-+.-.++...+.|........+..+
T Consensus       235 ~PD~IivGEiR~~ea~~-~l~a~~tGh~G~~tTiHa~s~~~ai~Rl~~~~~~~~~~~  290 (332)
T PRK13900        235 RPDRIIVGELRGAEAFS-FLRAINTGHPGSISTLHADSPAMAIEQLKLMVMQAGLGM  290 (332)
T ss_pred             CCCeEEEEecCCHHHHH-HHHHHHcCCCcEEEEEecCCHHHHHHHHHHHHHhccCCC
Confidence            55444433222334332 3443333232  455677777778888876544434333

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=93.97  E-value=0.043  Score=47.22  Aligned_cols=22  Identities=23%  Similarity=0.537  Sum_probs=19.4

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |+++|.||+||||+.+++....
T Consensus         4 i~iiG~~~vGKTsl~~~~~~~~   25 (162)
T cd04138           4 LVVVGAGGVGKSALTIQLIQNH   25 (162)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            6789999999999999998643

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=93.97  E-value=0.052  Score=58.26  Aligned_cols=46  Identities=17%  Similarity=0.381  Sum_probs=38.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGL  312 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~  312 (403)
                      .-++.|+|+||-|||++++.+++.+.. .|+.++.-.+|++-.+.|-
T Consensus       350 GpILcLVGPPGVGKTSLgkSIA~al~R-kfvR~sLGGvrDEAEIRGH  395 (782)
T COG0466         350 GPILCLVGPPGVGKTSLGKSIAKALGR-KFVRISLGGVRDEAEIRGH  395 (782)
T ss_pred             CcEEEEECCCCCCchhHHHHHHHHhCC-CEEEEecCccccHHHhccc
Confidence            578999999999999999999999975 4899988888777655564

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=93.95  E-value=0.043  Score=47.75  Aligned_cols=21  Identities=19%  Similarity=0.468  Sum_probs=18.8

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.||+||||+++++...
T Consensus         3 i~v~G~~~~GKTsli~~~~~~   23 (164)
T smart00173        3 LVVLGSGGVGKSALTIQFVQG   23 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678899999999999999864

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01394 radB RadB

Probab=93.94  E-value=0.05  Score=50.30  Aligned_cols=37  Identities=24%  Similarity=0.325  Sum_probs=28.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      ...+++++|.|||||||++.+++.+..  ....+.++++
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e   56 (218)
T cd01394          18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE   56 (218)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            468999999999999999999886542  2345667665

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=93.93  E-value=0.065  Score=51.37  Aligned_cols=37  Identities=14%  Similarity=0.330  Sum_probs=27.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC--CCccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~ls~D  301 (403)
                      ...+++++|.||+||||++.+++.+.  ..+..+.++.+
T Consensus        35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E   73 (259)
T TIGR03878        35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE   73 (259)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            36899999999999999999986532  22345666655

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=93.93  E-value=0.19  Score=54.57  Aligned_cols=38  Identities=24%  Similarity=0.381  Sum_probs=29.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE  305 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~  305 (403)
                      .=|+++|+||+||||+|+.++.++.. .++.++...+..
T Consensus       186 ~gill~G~~G~GKt~~~~~~a~~~~~-~f~~is~~~~~~  223 (644)
T PRK10733        186 KGVLMVGPPGTGKTLLAKAIAGEAKV-PFFTISGSDFVE  223 (644)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHcCC-CEEEEehHHhHH
Confidence            34899999999999999999988753 366676665544

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.89  E-value=0.84  Score=48.92  Aligned_cols=28  Identities=18%  Similarity=0.190  Sum_probs=24.8

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +-+..++++|++|.||||.|+.+++.+.
T Consensus        33 r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~   60 (584)
T PRK14952         33 RINHAYLFSGPRGCGKTSSARILARSLN   60 (584)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4567899999999999999999998765

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=93.89  E-value=0.05  Score=53.00  Aligned_cols=27  Identities=26%  Similarity=0.354  Sum_probs=23.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      +..++++|+||+||||+|+.+++++..
T Consensus        30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~   56 (305)
T TIGR00635        30 LDHLLLYGPPGLGKTTLAHIIANEMGV   56 (305)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            445789999999999999999998764

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=93.89  E-value=0.05  Score=52.21  Aligned_cols=26  Identities=35%  Similarity=0.564  Sum_probs=23.7

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHh
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ....+|.++|++|.||||+|.++++.
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~   42 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARD   42 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred             CCeEEEEEEcCCcCCcceeeeecccc
Confidence            46899999999999999999998866

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=93.87  E-value=0.053  Score=49.74  Aligned_cols=38  Identities=21%  Similarity=0.273  Sum_probs=28.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~  302 (403)
                      ...++.++|.||||||+++.+++....  ....+.++++.
T Consensus        11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~   50 (209)
T TIGR02237        11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG   50 (209)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            358999999999999999998875331  23466676653

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=93.87  E-value=0.054  Score=54.73  Aligned_cols=40  Identities=18%  Similarity=0.190  Sum_probs=31.2

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI  303 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~i  303 (403)
                      ...++++++|+.|+||||.+.+++..+.  .....+++.|..
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty  245 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF  245 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence            3478999999999999999999886542  234667888864

>PRK05973 replicative DNA helicase; Provisional

Probab=93.85  E-value=0.048  Score=51.62  Aligned_cols=71  Identities=15%  Similarity=0.332  Sum_probs=42.1

Q ss_pred             ccceeccccccCCCcccCCCC---CCCCCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH----HHHHHhhcC
Q 015668          240 EGYKSWVSALDDGNSVLGPTF---CNMKDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN----LILEQMKVP  310 (403)
Q Consensus       240 ~g~~p~~~~~~~~~~~~~p~~---~~~~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D----~ir~~l~~~  310 (403)
                      +||..|..-....... .|..   ..=....++++.|.||+||||++.+++.+.-  ++..++++.+    .+++.+...
T Consensus        36 ~g~~~w~~~~~~~~~~-~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s~  114 (237)
T PRK05973         36 EGFSSWSLLAAKAAAT-TPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRAL  114 (237)
T ss_pred             hccchHHHHHHhccCC-CCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHc
Confidence            6788885533222222 2321   1113467999999999999999988765331  2335566654    566665444


Q ss_pred             C
Q 015668          311 G  311 (403)
Q Consensus       311 g  311 (403)
                      |
T Consensus       115 g  115 (237)
T PRK05973        115 G  115 (237)
T ss_pred             C
Confidence            4

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=93.85  E-value=0.41  Score=45.98  Aligned_cols=122  Identities=20%  Similarity=0.261  Sum_probs=66.6

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC-CccEEEeccH--------H----HHHHhhcCCCccc--CCChHHHHHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTN--------L----ILEQMKVPGLLRK--HNYSERFQCLMGR  328 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls~D--------~----ir~~l~~~g~~~~--~~~~~~~~~~~~~  328 (403)
                      ...+++-++|-+||||||+++.+..-.. ..+-+.+...        .    +.+.|..-|...+  ..|.-.   ... 
T Consensus        37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhe---lSG-  112 (268)
T COG4608          37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHE---LSG-  112 (268)
T ss_pred             cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcc---cCc-
Confidence            3468999999999999999999987554 2334555422        1    2222222332111  001000   000 


Q ss_pred             HHHHHHHHHHHHh-cCCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECChHHHHHHHHHh
Q 015668          329 ANAIFDVLLSRAS-RTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKPEDLKIRSVKR  390 (403)
Q Consensus       329 a~~~~~~ll~~al-~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~pe~~~~R~~~R  390 (403)
                       .+..+-.+.+|+ -+-.-+|.|-  ..+..+.|...+.++.+.+   .+.++++.-+-...+....|
T Consensus       113 -GQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdr  179 (268)
T COG4608         113 -GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDR  179 (268)
T ss_pred             -hhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhccc
Confidence             011111233333 4566777776  6777888888888887653   45556665554444444444

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=93.84  E-value=0.06  Score=52.78  Aligned_cols=112  Identities=20%  Similarity=0.114  Sum_probs=57.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHHHHHHhhcCCCcc-cCCChHHHHHHHHHHHHHHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLILEQMKVPGLLR-KHNYSERFQCLMGRANAIFDVLLSRAS  341 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~ir~~l~~~g~~~-~~~~~~~~~~~~~~a~~~~~~ll~~al  341 (403)
                      ..|+++|.+||||||+++.+....+    ..+.+.|  ++..+ +...+... ......   .    .. .+..++..++
T Consensus       133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~ti--Ed~~E-l~~~~~~~v~~~~~~---~----~~-~~~~~l~~aL  201 (299)
T TIGR02782       133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVII--EDTRE-LQCAAPNVVQLRTSD---D----AI-SMTRLLKATL  201 (299)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEE--CCchh-hcCCCCCEEEEEecC---C----CC-CHHHHHHHHh
Confidence            5678999999999999999988764    2334444  43333 22111100 000000   0    00 2334666667


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHhcCCc--EEEEEECChHHHHHHHHHh
Q 015668          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRK--IAVVVFPKPEDLKIRSVKR  390 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~--~~vv~l~~pe~~~~R~~~R  390 (403)
                      +.+-+.|+=.---..+.- .+++.+..-+.  +.-+.-+++.+.+.|...-
T Consensus       202 R~~pD~iivGEiR~~ea~-~~l~a~~tGh~G~~tTiHa~~~~~ai~Rl~~l  251 (299)
T TIGR02782       202 RLRPDRIIVGEVRGGEAL-DLLKAWNTGHPGGIATIHANNAKAALDRLEQL  251 (299)
T ss_pred             cCCCCEEEEeccCCHHHH-HHHHHHHcCCCCeEEeeccCCHHHHHHHHHHH
Confidence            765555443322233332 23433333232  4456666677777886643

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=93.80  E-value=0.67  Score=41.77  Aligned_cols=28  Identities=18%  Similarity=0.149  Sum_probs=24.0

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +-+..+++.|+||.||||+|+.+++.+.
T Consensus        12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~   39 (188)
T TIGR00678        12 RLAHAYLFAGPEGVGKELLALALAKALL   39 (188)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence            3457899999999999999999988764

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=93.80  E-value=0.064  Score=50.06  Aligned_cols=38  Identities=18%  Similarity=0.204  Sum_probs=28.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC--CC------ccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PE------KRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~--~~------~~~v~ls~D~  302 (403)
                      ..+++.++|.|||||||++.+++...  +.      ...+.|+++.
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~   63 (235)
T cd01123          18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG   63 (235)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence            35899999999999999999997442  21      3466676643

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=93.78  E-value=0.063  Score=39.91  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=19.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~  288 (403)
                      .+.+++|..||||||+...+.-
T Consensus        24 ~~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999887753

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.77  E-value=0.19  Score=52.48  Aligned_cols=30  Identities=27%  Similarity=0.277  Sum_probs=25.6

Q ss_pred             CCCCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+-|+=|+|+|+||.|||-+|+..+-+..
T Consensus       333 GGKLPKGVLLvGPPGTGKTlLARAvAGEA~  362 (752)
T KOG0734|consen  333 GGKLPKGVLLVGPPGTGKTLLARAVAGEAG  362 (752)
T ss_pred             cCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence            345688999999999999999999987654

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=93.76  E-value=0.038  Score=43.12  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=20.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +++++|.+|+||||++..++..+.
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l~   24 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALA   24 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH
Confidence            467889999999999999988764

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=93.75  E-value=0.062  Score=50.38  Aligned_cols=25  Identities=32%  Similarity=0.373  Sum_probs=22.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ..++..+.|+.||||||+|..+.-.
T Consensus        29 ~GEvhaiMGPNGsGKSTLa~~i~G~   53 (251)
T COG0396          29 EGEVHAIMGPNGSGKSTLAYTIMGH   53 (251)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999999999854

>cd00876 Ras Ras family

Probab=93.75  E-value=0.047  Score=46.88  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.|||||||+.+++...
T Consensus         2 i~i~G~~~~GKTsli~~l~~~   22 (160)
T cd00876           2 VVVLGAGGVGKSAITIQFVKG   22 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999754

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=93.74  E-value=0.05  Score=53.26  Aligned_cols=28  Identities=25%  Similarity=0.408  Sum_probs=23.8

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      .+.++.++.||+||||||+.+.+.+-..
T Consensus        52 ~~GeIfViMGLSGSGKSTLvR~~NrLie   79 (386)
T COG4175          52 EEGEIFVIMGLSGSGKSTLVRLLNRLIE   79 (386)
T ss_pred             cCCeEEEEEecCCCCHHHHHHHHhccCC
Confidence            4578999999999999999999876443

>cd04136 Rap_like Rap-like subfamily

Probab=93.73  E-value=0.049  Score=47.18  Aligned_cols=21  Identities=19%  Similarity=0.461  Sum_probs=18.7

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.||+||||++.++...
T Consensus         4 i~i~G~~~vGKTsl~~~~~~~   24 (163)
T cd04136           4 VVVLGSGGVGKSALTVQFVQG   24 (163)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678899999999999999864

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=93.71  E-value=0.049  Score=47.05  Aligned_cols=21  Identities=24%  Similarity=0.488  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.||+||||+++++...
T Consensus         3 i~~~G~~~~GKTsl~~~l~~~   23 (164)
T cd04139           3 VIVVGAGGVGKSALTLQFMYD   23 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            688999999999999999754

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>smart00175 RAB Rab subfamily of small GTPases

Probab=93.69  E-value=0.05  Score=47.10  Aligned_cols=22  Identities=14%  Similarity=0.486  Sum_probs=19.3

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |+++|.|+|||||+.+++....
T Consensus         3 v~v~G~~~~GKTtli~~l~~~~   24 (164)
T smart00175        3 IILIGDSGVGKSSLLSRFTDGK   24 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6889999999999999997543

Rab GTPases are implicated in vesicle trafficking.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=93.68  E-value=0.058  Score=55.27  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=24.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls  299 (403)
                      .-++|+|+||+||||+|+.+++.+.. .++.++
T Consensus       109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~-pf~~id  140 (412)
T PRK05342        109 SNILLIGPTGSGKTLLAQTLARILDV-PFAIAD  140 (412)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHhCC-Cceecc
Confidence            45789999999999999999987642 244443

>cd01862 Rab7 Rab7 subfamily

Probab=93.68  E-value=0.046  Score=47.76  Aligned_cols=21  Identities=24%  Similarity=0.548  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.|++||||+++++...
T Consensus         3 i~viG~~~~GKSsl~~~l~~~   23 (172)
T cd01862           3 VIILGDSGVGKTSLMNQYVNK   23 (172)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            688999999999999999755

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PRK04296 thymidine kinase; Provisional

Probab=93.65  E-value=0.05  Score=49.60  Aligned_cols=33  Identities=15%  Similarity=0.171  Sum_probs=25.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC--CccEEEec
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLG  299 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls  299 (403)
                      .+++++|.|||||||.+..++.++.  .+..+++.
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k   37 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK   37 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence            5889999999999999988876653  23455563

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=93.63  E-value=0.051  Score=47.05  Aligned_cols=22  Identities=14%  Similarity=0.394  Sum_probs=19.6

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |+++|.||+||||+..++....
T Consensus         3 i~~vG~~~vGKTsli~~l~~~~   24 (168)
T cd04119           3 VISMGNSGVGKSCIIKRYCEGR   24 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            6899999999999999998653

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=93.62  E-value=0.3  Score=50.71  Aligned_cols=112  Identities=20%  Similarity=0.193  Sum_probs=60.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccHHHH----HHhhc-CCCcccC--CCh-------------HHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLIL----EQMKV-PGLLRKH--NYS-------------ERFQC  324 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D~ir----~~l~~-~g~~~~~--~~~-------------~~~~~  324 (403)
                      .+.+-++|++||||||+|+.+.--.+. .+.+.++.-+++    ++++. -|=.++.  -|.             .+-+.
T Consensus       362 G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~k  441 (580)
T COG4618         362 GEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEK  441 (580)
T ss_pred             CceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHH
Confidence            578889999999999999999865442 246777554543    33321 1111110  010             11123


Q ss_pred             HHHHHHHH-HHHHHHHHhcCCCe-EEEeC-CCCCHHHHHHHHHHHhc-CCcEEEEEECC
Q 015668          325 LMGRANAI-FDVLLSRASRTPRN-FIIDQ-TNVFKSARKRKLRLFVN-FRKIAVVVFPK  379 (403)
Q Consensus       325 ~~~~a~~~-~~~ll~~al~~g~~-vIlD~-Tn~~~~~R~~~~~~~~~-~~~~~vv~l~~  379 (403)
                      +++.|+.. ..+++- .+-+|.. .|=|. ..++--+|+| +.+++. |+.-.+|+++.
T Consensus       442 IieAA~lAgvHelIl-~lP~GYdT~iG~~G~~LSgGQRQR-IaLARAlYG~P~lvVLDE  498 (580)
T COG4618         442 VIEAARLAGVHELIL-RLPQGYDTRIGEGGATLSGGQRQR-IALARALYGDPFLVVLDE  498 (580)
T ss_pred             HHHHHHHcChHHHHH-hCcCCccCccCCCCCCCCchHHHH-HHHHHHHcCCCcEEEecC
Confidence            34433311 223332 2346664 44444 5566667776 777776 45444555544

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=93.59  E-value=0.71  Score=43.51  Aligned_cols=108  Identities=12%  Similarity=0.089  Sum_probs=68.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP  344 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g  344 (403)
                      .+.+|++-|..||||...++++...+....+.+.+.          +.+   .       ..+.....+.+.....-..|
T Consensus        30 ~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~----------~~p---t-------~eE~~~p~lwRfw~~lP~~G   89 (230)
T TIGR03707        30 ARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVAL----------PKP---S-------DRERTQWYFQRYVQHLPAAG   89 (230)
T ss_pred             CCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeC----------CCC---C-------HHHHcChHHHHHHHhCCCCC
Confidence            489999999999999999999999887654444321          110   0       01111223444555557889


Q ss_pred             CeEEEeCCCCCHHHHHH---------------HHHHHhcC----C-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          345 RNFIIDQTNVFKSARKR---------------KLRLFVNF----R-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       345 ~~vIlD~Tn~~~~~R~~---------------~~~~~~~~----~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      +..|+|.+....-...+               -|..|.+.    + .+.-+++... ++..+|..+|..
T Consensus        90 ~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~  158 (230)
T TIGR03707        90 EIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARID  158 (230)
T ss_pred             eEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhc
Confidence            99999987766533221               12233321    2 2333588887 899999999875

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=93.59  E-value=0.056  Score=53.82  Aligned_cols=28  Identities=21%  Similarity=0.378  Sum_probs=25.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      .-++++|.|++|+||||+++.|.+.+..
T Consensus        87 ~krIl~L~GPvg~GKSsl~~~Lk~~le~  114 (358)
T PF08298_consen   87 RKRILLLLGPVGGGKSSLAELLKRGLEE  114 (358)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence            3589999999999999999999988764

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=93.58  E-value=0.99  Score=46.89  Aligned_cols=40  Identities=10%  Similarity=0.120  Sum_probs=30.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHh----CCCccEEEeccHHHHHHh
Q 015668          268 VMMMVGLPASGKTTWAEKWVKD----HPEKRYILLGTNLILEQM  307 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~----~~~~~~v~ls~D~ir~~l  307 (403)
                      -+++.|.+|+|||++++.+..+    .+...++.++.+.+...+
T Consensus       143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~  186 (450)
T PRK14087        143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKA  186 (450)
T ss_pred             ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence            3788999999999999988764    334456778877765554

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=93.55  E-value=0.063  Score=53.67  Aligned_cols=27  Identities=30%  Similarity=0.437  Sum_probs=24.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      -..|+++|.+||||||+.+.+....+.
T Consensus       162 ~~nilI~G~tGSGKTTll~aLl~~i~~  188 (344)
T PRK13851        162 RLTMLLCGPTGSGKTTMSKTLISAIPP  188 (344)
T ss_pred             CCeEEEECCCCccHHHHHHHHHcccCC
Confidence            467899999999999999999988775

>cd04177 RSR1 RSR1 subgroup

Probab=93.52  E-value=0.055  Score=47.57  Aligned_cols=21  Identities=19%  Similarity=0.523  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.||+||||+.+++...
T Consensus         4 i~liG~~~~GKTsli~~~~~~   24 (168)
T cd04177           4 IVVLGAGGVGKSALTVQFVQN   24 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999754

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=93.51  E-value=0.27  Score=46.35  Aligned_cols=26  Identities=23%  Similarity=0.295  Sum_probs=21.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      -=+++.|+||.||||-+..|++++-+
T Consensus        49 P~liisGpPG~GKTTsi~~LAr~LLG   74 (333)
T KOG0991|consen   49 PNLIISGPPGTGKTTSILCLARELLG   74 (333)
T ss_pred             CceEeeCCCCCchhhHHHHHHHHHhC
Confidence            34668999999999999999887653

>cd00157 Rho Rho (Ras homology) family

Probab=93.51  E-value=0.055  Score=47.22  Aligned_cols=22  Identities=27%  Similarity=0.361  Sum_probs=19.6

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |+++|.+|+||||+.+++....
T Consensus         3 i~i~G~~~~GKSsli~~l~~~~   24 (171)
T cd00157           3 IVVVGDGAVGKTCLLISYTTGK   24 (171)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            6899999999999999998653

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=93.51  E-value=0.2  Score=45.00  Aligned_cols=44  Identities=16%  Similarity=0.123  Sum_probs=31.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC---------ccEEEeccHHHHHHhh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE---------KRYILLGTNLILEQMK  308 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~---------~~~v~ls~D~ir~~l~  308 (403)
                      ..+.+.++|++||||||+-+.++.-.+.         +.+.-++...+|++..
T Consensus        28 ~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~Vs   80 (223)
T COG4619          28 AGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVS   80 (223)
T ss_pred             CCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHH
Confidence            3678999999999999999999864441         1233345556777653

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=93.50  E-value=0.091  Score=48.96  Aligned_cols=27  Identities=30%  Similarity=0.342  Sum_probs=23.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++.++|++||||||+.+.++..++
T Consensus        32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          32 SGQVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCccC
Confidence            458999999999999999999987654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>COG1084 Predicted GTPase [General function prediction only]

Probab=93.50  E-value=0.45  Score=46.86  Aligned_cols=98  Identities=20%  Similarity=0.238  Sum_probs=57.9

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC---c----cEEEe---ccHHHHHHhhc-CCCcccCCChHHHHHHHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE---K----RYILL---GTNLILEQMKV-PGLLRKHNYSERFQCLMGRANAIF  333 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~---~----~~v~l---s~D~ir~~l~~-~g~~~~~~~~~~~~~~~~~a~~~~  333 (403)
                      +...|+++|.|..|||||.+++-..-++   .    .-+.|   ..+.+|-++.. .|+++. . -...+.+..||-.++
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDR-P-l~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDR-P-LEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCC-C-hHHhcHHHHHHHHHH
Confidence            4667889999999999999999765442   0    01222   22333333322 565432 1 122234454543222


Q ss_pred             HHHHHHHhcCCCeEEEeC---CCCCHHHHHHHHHHHhcC
Q 015668          334 DVLLSRASRTPRNFIIDQ---TNVFKSARKRKLRLFVNF  369 (403)
Q Consensus       334 ~~ll~~al~~g~~vIlD~---Tn~~~~~R~~~~~~~~~~  369 (403)
                           +.+..=..+++|.   +-.+.+++.++++.++..
T Consensus       245 -----~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~  278 (346)
T COG1084         245 -----RHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL  278 (346)
T ss_pred             -----HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh
Confidence                 2245666888887   567788888888888764

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=93.49  E-value=0.14  Score=53.57  Aligned_cols=34  Identities=24%  Similarity=0.403  Sum_probs=27.3

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEe
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL  298 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~l  298 (403)
                      ..+..+++.|+||+|||.+|+.++.+... .++.+
T Consensus       274 ~~~~giLl~GpPGtGKT~lAkava~~~~~-~fi~v  307 (494)
T COG0464         274 RPPKGVLLYGPPGTGKTLLAKAVALESRS-RFISV  307 (494)
T ss_pred             CCCCeeEEECCCCCCHHHHHHHHHhhCCC-eEEEe
Confidence            45779999999999999999999996652 24444

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.49  E-value=0.93  Score=48.78  Aligned_cols=28  Identities=25%  Similarity=0.293  Sum_probs=24.7

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +-+..+++.|+||.||||+|+.+++.+.
T Consensus        36 ri~ha~Lf~GPpG~GKTtiArilAk~L~   63 (624)
T PRK14959         36 RVAPAYLFSGTRGVGKTTIARIFAKALN   63 (624)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence            3467899999999999999999998875

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=93.48  E-value=0.059  Score=49.56  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~  288 (403)
                      .++++++|++||||||+.+.+..
T Consensus        25 g~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          25 KNGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             CcEEEEECCCCCChHHHHHHHHH
Confidence            38999999999999999998864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=93.47  E-value=1.1  Score=48.92  Aligned_cols=34  Identities=24%  Similarity=0.242  Sum_probs=26.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEec
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG  299 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls  299 (403)
                      .+.+.++|.+||||||+++-++.-++. ++-+.++
T Consensus       491 G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~id  525 (694)
T TIGR03375       491 GEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLD  525 (694)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence            578999999999999999999876542 3445554

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=93.46  E-value=0.3  Score=46.81  Aligned_cols=38  Identities=18%  Similarity=0.341  Sum_probs=29.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir  304 (403)
                      |+-|++-|+||.|||..|+.++.+..- .++.+..-.+.
T Consensus       151 PknVLFyGppGTGKTm~Akalane~kv-p~l~vkat~li  188 (368)
T COG1223         151 PKNVLFYGPPGTGKTMMAKALANEAKV-PLLLVKATELI  188 (368)
T ss_pred             cceeEEECCCCccHHHHHHHHhcccCC-ceEEechHHHH
Confidence            678999999999999999999988753 25556554443

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=93.43  E-value=0.062  Score=53.19  Aligned_cols=27  Identities=26%  Similarity=0.346  Sum_probs=23.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      +..+++.|+||+||||+|+.+++++..
T Consensus        51 ~~~~ll~GppG~GKT~la~~ia~~l~~   77 (328)
T PRK00080         51 LDHVLLYGPPGLGKTTLANIIANEMGV   77 (328)
T ss_pred             CCcEEEECCCCccHHHHHHHHHHHhCC
Confidence            456789999999999999999998763

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=93.42  E-value=0.63  Score=49.06  Aligned_cols=44  Identities=16%  Similarity=0.166  Sum_probs=32.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEec--------cHHHHHHhh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG--------TNLILEQMK  308 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls--------~D~ir~~l~  308 (403)
                      ..+.+.++|.+||||||+...++--++. .+-+.+|        ...+|+++.
T Consensus       346 ~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~  398 (559)
T COG4988         346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS  398 (559)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence            3688999999999999999999987773 3445554        335666653

>PRK05748 replicative DNA helicase; Provisional

Probab=93.41  E-value=0.56  Score=48.61  Aligned_cols=43  Identities=16%  Similarity=0.368  Sum_probs=30.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH----HHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN----LILEQM  307 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D----~ir~~l  307 (403)
                      ...++++.|.||.|||+||-.++....   .+...++|.+    .+.+++
T Consensus       202 ~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~  251 (448)
T PRK05748        202 PNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRM  251 (448)
T ss_pred             CCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHH
Confidence            368999999999999999988865421   2345667664    454444

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=93.40  E-value=0.099  Score=48.65  Aligned_cols=26  Identities=19%  Similarity=0.288  Sum_probs=23.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..+++.++|.+||||||+.+.++..+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            35899999999999999999998776

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=93.40  E-value=0.055  Score=46.80  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.4

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |+++|.||+||||+.+++....
T Consensus         2 i~i~G~~~~GKTsl~~~~~~~~   23 (160)
T cd04156           2 VLLLGLDSAGKSTLLYKLKHAE   23 (160)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Confidence            6789999999999999997653

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=93.38  E-value=0.066  Score=49.20  Aligned_cols=27  Identities=22%  Similarity=0.163  Sum_probs=23.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++.++|.+||||||+.+.++..++
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGIIL   51 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            358899999999999999999987654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=93.38  E-value=0.06  Score=49.73  Aligned_cols=35  Identities=20%  Similarity=0.160  Sum_probs=27.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++..++ ..+-+.++
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~   64 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVD   64 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEEC
Confidence            358899999999999999999987764 23345453

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.38  E-value=0.44  Score=51.19  Aligned_cols=28  Identities=21%  Similarity=0.220  Sum_probs=24.6

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +-+..++++|+||+||||+|+.+++.+.
T Consensus        36 ~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~   63 (585)
T PRK14950         36 RVAHAYLFTGPRGVGKTSTARILAKAVN   63 (585)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4467889999999999999999998764

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=93.38  E-value=0.73  Score=44.55  Aligned_cols=38  Identities=21%  Similarity=0.245  Sum_probs=28.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~  302 (403)
                      ....++++|.+|+||||+++.++..+..  .....++.|.
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~  113 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH  113 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence            4579999999999999999988765421  2355677764

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=93.36  E-value=0.069  Score=48.62  Aligned_cols=35  Identities=11%  Similarity=0.099  Sum_probs=26.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls  299 (403)
                      ..+++.++|.+||||||+.+.++..++ ..+-+.++
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~   60 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYK   60 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence            357999999999999999999987654 22334443

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=93.36  E-value=0.18  Score=55.14  Aligned_cols=43  Identities=26%  Similarity=0.228  Sum_probs=30.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEe--------ccHHHHHHhh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILL--------GTNLILEQMK  308 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~l--------s~D~ir~~l~  308 (403)
                      .+.|.++|.+||||||+++-+..-+.. .+-+.+        +.+.+|+.++
T Consensus       499 Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig  550 (709)
T COG2274         499 GEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVG  550 (709)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhee
Confidence            578899999999999999999865542 223433        2335676664

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=93.34  E-value=0.73  Score=50.09  Aligned_cols=29  Identities=24%  Similarity=0.205  Sum_probs=25.4

Q ss_pred             CCCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       263 ~~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      .+-+..+|++|+||+||||+|+.+++.+.
T Consensus        35 ~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln   63 (709)
T PRK08691         35 GRLHHAYLLTGTRGVGKTTIARILAKSLN   63 (709)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence            34568899999999999999999998865

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=93.33  E-value=0.066  Score=51.84  Aligned_cols=27  Identities=37%  Similarity=0.564  Sum_probs=23.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCc
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEK  293 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~  293 (403)
                      .+|.++|.+||||||++.+|...+..+
T Consensus         2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~   28 (274)
T PRK14493          2 KVLSIVGYKATGKTTLVERLVDRLSGR   28 (274)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            578999999999999999999887644

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=93.31  E-value=0.07  Score=49.02  Aligned_cols=35  Identities=23%  Similarity=0.217  Sum_probs=26.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++..++ ..+.+.++
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~   61 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD   61 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence            368999999999999999999987653 23344443

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=93.30  E-value=0.075  Score=49.44  Aligned_cols=37  Identities=24%  Similarity=0.357  Sum_probs=28.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      ...++++.|.||+||||++.+++.+.-  .+..+.++++
T Consensus        22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e   60 (225)
T PRK09361         22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE   60 (225)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            368999999999999999999875321  2346677776

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=93.30  E-value=0.68  Score=44.18  Aligned_cols=43  Identities=16%  Similarity=0.246  Sum_probs=33.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK  308 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~  308 (403)
                      .|+=|+|.|+||+|||-+|+..+..... .++.+...++.++..
T Consensus       188 pprgvllygppg~gktml~kava~~t~a-~firvvgsefvqkyl  230 (408)
T KOG0727|consen  188 PPRGVLLYGPPGTGKTMLAKAVANHTTA-AFIRVVGSEFVQKYL  230 (408)
T ss_pred             CCcceEEeCCCCCcHHHHHHHHhhccch-heeeeccHHHHHHHh
Confidence            3678999999999999999999876653 477776666666654

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=93.28  E-value=0.063  Score=49.59  Aligned_cols=35  Identities=20%  Similarity=0.323  Sum_probs=26.9

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++..++ ..+-+.++
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~   63 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFN   63 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence            358899999999999999999987654 23344453

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=93.28  E-value=0.067  Score=49.53  Aligned_cols=27  Identities=26%  Similarity=0.404  Sum_probs=23.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++.++|++||||||+.+.++...+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGLLP   51 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence            368999999999999999999986543

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=93.27  E-value=0.07  Score=48.27  Aligned_cols=34  Identities=21%  Similarity=0.246  Sum_probs=26.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEe
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILL  298 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~l  298 (403)
                      ..+++.++|++||||||+.+.++..++ ..+-+.+
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~   51 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLI   51 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE
Confidence            357899999999999999999987554 2334444

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=93.24  E-value=0.093  Score=53.03  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=21.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      -+++++|++||||||+.+.+.+..
T Consensus       150 GlilI~G~TGSGKTT~l~al~~~i  173 (372)
T TIGR02525       150 GLGLICGETGSGKSTLAASIYQHC  173 (372)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            478899999999999999997765

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>PRK05595 replicative DNA helicase; Provisional

Probab=93.24  E-value=0.39  Score=49.74  Aligned_cols=37  Identities=19%  Similarity=0.322  Sum_probs=27.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC---CCccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~---~~~~~v~ls~D  301 (403)
                      ..+++++.|.||+|||+||-.++...   ....+.++|.+
T Consensus       200 ~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlE  239 (444)
T PRK05595        200 KGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLE  239 (444)
T ss_pred             CCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecC
Confidence            36899999999999999998886532   12346677765

>cd04155 Arl3 Arl3 subfamily

Probab=93.23  E-value=0.064  Score=47.13  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=20.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ..-|+++|.+||||||+.+.+...
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcC
Confidence            344889999999999999999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=93.23  E-value=0.072  Score=49.06  Aligned_cols=27  Identities=22%  Similarity=0.211  Sum_probs=23.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++.++|++||||||+.+.++..++
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLER   51 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            358899999999999999999987553

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=93.23  E-value=0.095  Score=49.13  Aligned_cols=34  Identities=18%  Similarity=0.199  Sum_probs=26.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEe
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILL  298 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~l  298 (403)
                      ..+++.++|++||||||+++.++..++ ..+-+.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   60 (241)
T cd03256          26 PGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI   60 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence            358899999999999999999986653 2333444

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=93.23  E-value=0.049  Score=46.60  Aligned_cols=24  Identities=29%  Similarity=0.479  Sum_probs=18.5

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      |+|-|.||.||||+|+.+++.+..
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~   25 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGL   25 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT-
T ss_pred             EeeECCCccHHHHHHHHHHHHcCC
Confidence            688999999999999999998864

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=93.21  E-value=0.51  Score=45.02  Aligned_cols=27  Identities=22%  Similarity=0.273  Sum_probs=23.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      .+-++++|.+|+||||+++++.+....
T Consensus        16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~   42 (249)
T cd01128          16 GQRGLIVAPPKAGKTTLLQSIANAITK   42 (249)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence            567889999999999999999987654

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=93.20  E-value=0.067  Score=49.48  Aligned_cols=27  Identities=22%  Similarity=0.265  Sum_probs=23.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++.++|++||||||+.+.++...+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGELR   53 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            357899999999999999999987653

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd04124 RabL2 RabL2 subfamily

Probab=93.19  E-value=0.068  Score=46.74  Aligned_cols=21  Identities=29%  Similarity=0.632  Sum_probs=18.6

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.||+||||+++++...
T Consensus         3 i~vvG~~~vGKTsli~~~~~~   23 (161)
T cd04124           3 IILLGDSAVGKSKLVERFLMD   23 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678999999999999998754

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=93.18  E-value=0.072  Score=49.37  Aligned_cols=27  Identities=26%  Similarity=0.228  Sum_probs=23.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++.++|++||||||+.+.++...+
T Consensus        12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~   38 (213)
T PRK15177         12 YHEHIGILAAPGSGKTTLTRLLCGLDA   38 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            358999999999999999999986543

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=93.17  E-value=0.069  Score=47.82  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=20.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      -.=|++.|++||||||+.+++...
T Consensus        14 ~~~ililGl~~sGKTtll~~l~~~   37 (175)
T PF00025_consen   14 EIKILILGLDGSGKTTLLNRLKNG   37 (175)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHSS
T ss_pred             EEEEEEECCCccchHHHHHHhhhc
Confidence            355688999999999999999753

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=93.17  E-value=0.067  Score=49.26  Aligned_cols=27  Identities=22%  Similarity=0.282  Sum_probs=23.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++.++|.+||||||+.+.++..++
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~   53 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGALT   53 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            357999999999999999999987653

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=93.17  E-value=0.068  Score=49.96  Aligned_cols=27  Identities=19%  Similarity=0.195  Sum_probs=23.9

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++.++|++||||||+.+.++..++
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            358999999999999999999987765

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=93.17  E-value=0.067  Score=50.12  Aligned_cols=27  Identities=26%  Similarity=0.291  Sum_probs=23.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++.++|++||||||+.+.++..++
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLLR   51 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            358899999999999999999997654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=93.16  E-value=0.52  Score=46.38  Aligned_cols=83  Identities=13%  Similarity=0.169  Sum_probs=49.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT  343 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~  343 (403)
                      ..-++|.|.||+|||++|..++.++..+  ....+....+..+|.. .. .+    ..           +.+.++ .+.+
T Consensus       156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~-~~-~~----~~-----------~~~~l~-~l~~  217 (306)
T PRK08939        156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN-SI-SD----GS-----------VKEKID-AVKE  217 (306)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH-HH-hc----Cc-----------HHHHHH-HhcC
Confidence            4578999999999999999998876432  2445555666555531 00 00    00           011221 1366


Q ss_pred             CCeEEEeCCC---CCHHHHHHHHHHH
Q 015668          344 PRNFIIDQTN---VFKSARKRKLRLF  366 (403)
Q Consensus       344 g~~vIlD~Tn---~~~~~R~~~~~~~  366 (403)
                      -..+|||.-.   ++.-.|..++..+
T Consensus       218 ~dlLiIDDiG~e~~s~~~~~~ll~~I  243 (306)
T PRK08939        218 APVLMLDDIGAEQMSSWVRDEVLGVI  243 (306)
T ss_pred             CCEEEEecCCCccccHHHHHHHHHHH
Confidence            7789999853   5555565565555

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=93.16  E-value=0.066  Score=50.32  Aligned_cols=34  Identities=24%  Similarity=0.246  Sum_probs=26.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEe
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILL  298 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~l  298 (403)
                      ..+++.++|++||||||+.+.++.-++ ..+-+.+
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   61 (243)
T TIGR02315        27 PGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL   61 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEE
Confidence            358899999999999999999986653 2233444

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.15  E-value=0.82  Score=48.24  Aligned_cols=28  Identities=21%  Similarity=0.124  Sum_probs=24.9

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +-+..++++|+||.||||+|+.+++.+.
T Consensus        36 ~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~   63 (509)
T PRK14958         36 YLHHAYLFTGTRGVGKTTISRILAKCLN   63 (509)
T ss_pred             CCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence            4467899999999999999999999875

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=93.12  E-value=0.94  Score=43.79  Aligned_cols=27  Identities=19%  Similarity=0.235  Sum_probs=23.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      ..-++++|+|||||||+.+.++..+..
T Consensus       111 ~~~~~i~g~~g~GKttl~~~l~~~~~~  137 (270)
T TIGR02858       111 VLNTLIISPPQCGKTTLLRDLARILST  137 (270)
T ss_pred             eeEEEEEcCCCCCHHHHHHHHhCccCC
Confidence            467899999999999999999987764

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=93.12  E-value=0.071  Score=49.06  Aligned_cols=27  Identities=26%  Similarity=0.362  Sum_probs=23.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++.++|.+||||||+.+.++..++
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   52 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEEL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            358899999999999999999987654

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd04113 Rab4 Rab4 subfamily

Probab=93.12  E-value=0.07  Score=46.28  Aligned_cols=22  Identities=18%  Similarity=0.601  Sum_probs=19.3

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |+++|.|++||||+.+++....
T Consensus         3 i~v~G~~~vGKTsli~~l~~~~   24 (161)
T cd04113           3 FIIIGSSGTGKSCLLHRFVENK   24 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            6889999999999999997543

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=93.11  E-value=0.07  Score=54.62  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=22.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      .-|+++|+||+|||++|+.+++.+.
T Consensus       117 ~~iLL~GP~GsGKT~lAraLA~~l~  141 (413)
T TIGR00382       117 SNILLIGPTGSGKTLLAQTLARILN  141 (413)
T ss_pred             ceEEEECCCCcCHHHHHHHHHHhcC
Confidence            4688999999999999999998764

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=93.09  E-value=0.11  Score=52.00  Aligned_cols=37  Identities=22%  Similarity=0.408  Sum_probs=28.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCc-cEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK-RYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~-~~v~ls~D  301 (403)
                      ..+.|+++|+||+|||.+|-.+++++..+ .++.++.-
T Consensus        49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgS   86 (398)
T PF06068_consen   49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGS   86 (398)
T ss_dssp             TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGG
T ss_pred             cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccc
Confidence            36899999999999999999999998754 46776554

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=93.09  E-value=0.071  Score=49.12  Aligned_cols=35  Identities=20%  Similarity=0.141  Sum_probs=27.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls  299 (403)
                      ..+++.++|.+||||||+.+.++..++ ..+-+.++
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~   59 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVF   59 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEEC
Confidence            468999999999999999999987653 23344453

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd01860 Rab5_related Rab5-related subfamily

Probab=93.06  E-value=0.069  Score=46.26  Aligned_cols=21  Identities=24%  Similarity=0.582  Sum_probs=19.1

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.+++||||+++++...
T Consensus         4 i~v~G~~~~GKSsli~~l~~~   24 (163)
T cd01860           4 LVLLGDSSVGKSSLVLRFVKN   24 (163)
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            688999999999999999865

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=93.04  E-value=0.08  Score=49.07  Aligned_cols=27  Identities=22%  Similarity=0.191  Sum_probs=23.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++.++|.+||||||+.+.++..++
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   51 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTLLK   51 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            358999999999999999999987643

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=93.03  E-value=0.45  Score=45.52  Aligned_cols=87  Identities=21%  Similarity=0.276  Sum_probs=52.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR  342 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~  342 (403)
                      ++.=+++.|.||.|||++|..+..++-.+  ....+..-+++.+|...           ++.  ....    ..+...+.
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~-----------~~~--~~~~----~~l~~~l~  166 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA-----------FDE--GRLE----EKLLRELK  166 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH-----------Hhc--CchH----HHHHHHhh
Confidence            46678899999999999998887766532  35566666666666410           000  0000    11112236


Q ss_pred             CCCeEEEeCCCC---CHHHHHHHHHHHhc
Q 015668          343 TPRNFIIDQTNV---FKSARKRKLRLFVN  368 (403)
Q Consensus       343 ~g~~vIlD~Tn~---~~~~R~~~~~~~~~  368 (403)
                      +=...|||.-..   ++..+.-+++.+..
T Consensus       167 ~~dlLIiDDlG~~~~~~~~~~~~~q~I~~  195 (254)
T COG1484         167 KVDLLIIDDIGYEPFSQEEADLLFQLISR  195 (254)
T ss_pred             cCCEEEEecccCccCCHHHHHHHHHHHHH
Confidence            677899998544   34446666665544

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=93.02  E-value=0.11  Score=50.30  Aligned_cols=32  Identities=19%  Similarity=0.500  Sum_probs=25.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEE
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYIL  297 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~  297 (403)
                      ..=++++|++|+|||++++.+.+.++...+++
T Consensus        33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~   64 (272)
T PF12775_consen   33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLV   64 (272)
T ss_dssp             TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEE
T ss_pred             CCcEEEECCCCCchhHHHHhhhccCCccccce
Confidence            35578999999999999999998877655443

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=93.01  E-value=0.074  Score=53.52  Aligned_cols=25  Identities=20%  Similarity=0.395  Sum_probs=22.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      -.+|+++|++||||||+.+.++...
T Consensus       134 ~glilI~GpTGSGKTTtL~aLl~~i  158 (358)
T TIGR02524       134 EGIVFITGATGSGKSTLLAAIIREL  158 (358)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4799999999999999999998765

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=93.00  E-value=0.08  Score=49.32  Aligned_cols=27  Identities=22%  Similarity=0.245  Sum_probs=23.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++.++|.+||||||+.+.++..++
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~   61 (228)
T PRK10584         35 RGETIALIGESGSGKSTLLAILAGLDD   61 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            368999999999999999999987654

>cd01898 Obg Obg subfamily

Probab=93.00  E-value=0.071  Score=46.54  Aligned_cols=21  Identities=33%  Similarity=0.520  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |.++|.|++||||+.+++...
T Consensus         3 v~ivG~~~~GKStl~~~l~~~   23 (170)
T cd01898           3 VGLVGLPNAGKSTLLSAISNA   23 (170)
T ss_pred             eEEECCCCCCHHHHHHHHhcC
Confidence            678999999999999999754

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=93.00  E-value=0.08  Score=49.58  Aligned_cols=27  Identities=30%  Similarity=0.305  Sum_probs=23.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++.++|.+||||||+.+.++.-++
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   60 (233)
T PRK11629         34 EGEMMAIVGSSGSGKSTLLHLLGGLDT   60 (233)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            357899999999999999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	403
3toj_A	213	SET1/ASH2 histone methyltransferase complex subun;	2e-26
3emw_A	217	SPRY domain-containing SOCS box protein 2; apoptos	2e-24
2jk9_A	212	SPRY domain-containing SOCS box protein 1; transcr	7e-23
2afj_A	226	Gene rich cluster, C9 gene; beta sandwich, gene re	4e-22
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	3e-20
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	4e-20
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	3e-17
2yyo_A	171	SPRY domain-containing protein 3; NPPSFA, national	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	4e-06
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	2e-05
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	2e-05
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	2e-05

>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens} Length = 213

 Score =  104 bits (261), Expect = 2e-26
 Identities = 40/192 (20%), Positives = 66/192 (34%), Gaps = 31/192 (16%)

Query: 42  QRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
           +RV+L   D      I D+ L   G         +S  RA+ G+  G + F   +    P
Sbjct: 11  ERVLLALHDRAPQLKISDDRLTVVGEKG------YSMVRASHGVRKGAWYFEITVDEMPP 64

Query: 102 VDMEDTPPDQQHVCRVGTSRGDDPVGK-LGETEQSFGF-GGTGKFSHGGNFLNFGEKFGV 159
                         R+G S+    +   LG  + S+ +    G   H     ++   +G 
Sbjct: 65  ----------DTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQ 114

Query: 160 GDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHI 219
           GD +   I+L    ++  G ++          F       GV    +     E   FP I
Sbjct: 115 GDVLGFYINLPEDTISGRGSSE--------IIFYKNGVNQGVAYKDIF----EGVYFPAI 162

Query: 220 -LLKNVVVVMQF 230
            L K+  V + F
Sbjct: 163 SLYKSCTVSINF 174

>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A Length = 217

 Score = 99.0 bits (246), Expect = 2e-24
 Identities = 36/179 (20%), Positives = 66/179 (36%), Gaps = 32/179 (17%)

Query: 26  DDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGI 85
            + +  +      +Q++    NP DC  + ++++ GL      +   A    GAR   G 
Sbjct: 27  LEELLSAPPPDLGAQRRHG-WNPKDCSENIEVKEGGLY---FERRPVAQSTDGARGKRGY 82

Query: 86  NGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGK------LGETEQSFGF- 138
           + G + +                  +     VG +    P+        LG   +S+G+ 
Sbjct: 83  SRGLHAWEISWPL----------EQRGTHAVVGVATALAPLQTDHYAALLGSNSESWGWD 132

Query: 139 GGTGKFSHGGN--------FLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
            G GK  H               GE+  V + ++  +D+E     T+G+A  G +LG A
Sbjct: 133 IGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEG---TLGYAIGGTYLGPA 188

>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A Length = 212

 Score = 94.7 bits (235), Expect = 7e-23
 Identities = 44/249 (17%), Positives = 77/249 (30%), Gaps = 52/249 (20%)

Query: 4   AKRELELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLK 63
           + +EL+  D  KP          D + D        Q      N  D  L+  ++++   
Sbjct: 1   SMQELQGLDYCKPTR-------LDLLLDMPPVSYDVQ-LLHSWNNNDRSLNVFVKEDDKL 52

Query: 64  SSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGD 123
               H+   A      R  VG   G + +                     V  V T+   
Sbjct: 53  I--FHRHPVAQSTDAIRGKVGYTRGLHVWQITW--------AMRQRGTHAVVGVATADAP 102

Query: 124 ----DPVGKLGETEQSFGF-GGTGKFSHGGN---------FLNFGEKFGVGDTIICAIDL 169
                    +G   +S+G+  G  +  H G          FL   E F V D+ + A+D+
Sbjct: 103 LHSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDM 162

Query: 170 ESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQ 229
           +     T+ F  +G+++G A  F                      ++P +        ++
Sbjct: 163 DDG---TLSFIVDGQYMGVA--FRGLKGK---------------KLYPVVSAVWGHCEIR 202

Query: 230 FSVEQGLIP 238
                GL P
Sbjct: 203 MRYLNGLDP 211

>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22 Length = 226

 Score = 92.9 bits (230), Expect = 4e-22
 Identities = 36/178 (20%), Positives = 64/178 (35%), Gaps = 32/178 (17%)

Query: 27  DPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGIN 86
           + +  +      +Q+     NP DC  + D+++ GL      +   A    G R   G +
Sbjct: 25  EELLSAPPPDLVAQRHHG-WNPKDCSENIDVKEGGLC---FERRPVAQSTDGVRGKRGYS 80

Query: 87  GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPV------GKLGETEQSFGF-G 139
            G + +       Q                VG +    P+        LG   +S+G+  
Sbjct: 81  RGLHAWEISWPLEQRG----------THAVVGVATALAPLQADHYAALLGSNSESWGWDI 130

Query: 140 GTGKFSHGGN--------FLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
           G GK  H               GE+  V + ++  +D+E     T+G++  G +LG A
Sbjct: 131 GRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEG---TLGYSIGGTYLGPA 185

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score = 88.4 bits (219), Expect = 3e-20
 Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 16/141 (11%)

Query: 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLGTNLILEQMKVPGLLRKHNYSE 320
           M D  ++++ GLP  GK+T+++   K   +     I+LG++LI E   V        + E
Sbjct: 1   MGDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV--------WKE 52

Query: 321 RFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPK 379
           +++            L+  A +     I+D TN + S R+  + +   +    A++    
Sbjct: 53  KYE---EFIKKSTYRLIDSALKN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKA 108

Query: 380 PED-LKIRSVKRFKEMGKEQI 399
             D L  R+++R +++  E I
Sbjct: 109 SLDVLIRRNIERGEKIPNEVI 129

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 86.0 bits (213), Expect = 4e-20
 Identities = 24/130 (18%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERF 322
           MK  ++++ +G P SGK+TWA +++  +P   +  +  +   + +       ++ Y+++ 
Sbjct: 1   MK--KIILTIGCPGSGKSTWAREFIAKNP--GFYNINRDDYRQSIMAHEERDEYKYTKKK 56

Query: 323 QCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKPE 381
           + ++          +     + +  II  TN+    R         +  K+   VF  P 
Sbjct: 57  EGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPW 116

Query: 382 DLKI-RSVKR 390
              + R+ KR
Sbjct: 117 TELVKRNSKR 126

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 80.5 bits (198), Expect = 3e-17
 Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 5/125 (4%)

Query: 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERF 322
           MK  ++++ +G P SGK+TWA +++  +P   +  +  +   + +       ++ Y+++ 
Sbjct: 1   MK--KIILTIGCPGSGKSTWAREFIAKNP--GFYNINRDDYRQSIMAHEERDEYKYTKKK 56

Query: 323 QCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKPE 381
           + ++          +     + +  II  TN+    R         +  K+   VF  P 
Sbjct: 57  EGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPW 116

Query: 382 DLKIR 386
              ++
Sbjct: 117 TELVK 121

>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} Length = 171

 Score = 67.6 bits (165), Expect = 1e-13
 Identities = 32/194 (16%), Positives = 53/194 (27%), Gaps = 35/194 (18%)

Query: 50  DCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPP 109
                  I  +G     L   G +       A+  +      F   IV            
Sbjct: 4   GSSGFKHILVDGDT---LSYHGNSGEVGCYVASRPLTKDSNYFEVSIVD----------S 50

Query: 110 DQQHVCRVGTSRGDDPVGKLGETEQ-SFGFGGTGKFSHGGNF--LNFGEKFGVGDTIICA 166
             +    VG       +         S  +       + G      FG K   GD I C 
Sbjct: 51  GVRGTIAVGLVPQYYSLDHQPGWLPDSVAYHADDGKLYNGRAKGRQFGSKCNSGDRIGCG 110

Query: 167 IDLESKPLAT--IGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNV 224
           I+  S  + T  I F KNGK +G+     +                    +FP + + ++
Sbjct: 111 IEPVSFDVQTAQIFFTKNGKRVGSTIMPMSPDG-----------------LFPAVGMHSL 153

Query: 225 VVVMQFSVEQGLIP 238
              ++  +   L  
Sbjct: 154 GEEVRLHLNAELSG 167

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 3e-07
 Identities = 57/431 (13%), Positives = 117/431 (27%), Gaps = 123/431 (28%)

Query: 5   KRELELPD-GDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLK 63
               +  D  D P+S++ K ++D  +     S         +            ++  ++
Sbjct: 30  VDNFDCKDVQDMPKSILSKEEIDHII----MSKDAVSGTLRLF-----WTLLSKQEEMVQ 80

Query: 64  S--SGLHQEGFAYCWSGARANV---GINGGKYCFGCKIVSTQPVDMEDTPP-DQQHVCRV 117
                + +  + +  S  +       +    Y      +  +     D     + +V R+
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY------IEQRDRLYNDNQVFAKYNVSRL 134

Query: 118 GTSRGDDPVGKLGETEQS---------FGFGGTGK----------------FSHGGNFLN 152
                  P  KL +              G  G+GK                      +LN
Sbjct: 135 ------QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 153 FGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCE 212
                     +        + L  + +  +  W   +         +  + + ++ R  +
Sbjct: 189 LKNCNSPETVL--------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-RLLK 239

Query: 213 SAVFPHIL--LKNVVVVMQFSVEQGLIPVEGYKSWV-SALDDGNSVLGPTFCNMKDCEVM 269
           S  + + L  L NV                   +   +A +               C+++
Sbjct: 240 SKPYENCLLVLLNV-----------------QNAKAWNAFNLS-------------CKIL 269

Query: 270 MMVGLPASGKTTWAEKWVKD----HPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCL 325
           +         TT   K V D           L   ++ L   +V  LL K     R Q L
Sbjct: 270 L---------TT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDL 318

Query: 326 MGRANAIFDVLLSRASRTPRNFI--IDQT-NVFKSARKRKLRLFVN------FRKI--AV 374
                      LS  + + R+ +   D   +V        +   +N      +RK+   +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 375 VVFPKPEDLKI 385
            VF  P    I
Sbjct: 379 SVF--PPSAHI 387

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 46.5 bits (110), Expect = 4e-06
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 14/131 (10%)

Query: 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMG 327
           ++++ G PA+GKTT ++         R  LL  +   E M          +S R    +G
Sbjct: 7   LIIVTGHPATGKTTLSQALAT---GLRLPLLSKDAFKEVMFDGLGWSDREWSRR----VG 59

Query: 328 RANAIFDVLLSRASRTPR---NFIIDQTNVFKSARKR--KLRLFVNFRKIAVVVFPKPED 382
                  +L   A+   +   + I++         +R   L     F  I +      + 
Sbjct: 60  A--TAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDV 117

Query: 383 LKIRSVKRFKE 393
           L  R + R  +
Sbjct: 118 LVERILSRIAQ 128

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Length = 287

 Score = 45.0 bits (105), Expect = 2e-05
 Identities = 20/133 (15%), Positives = 52/133 (39%), Gaps = 3/133 (2%)

Query: 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLM 326
              ++ G P SGKT+     + +  +   I++  +   +Q      L K    +  + + 
Sbjct: 34  TAFLLGGQPGSGKTS-LRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVT 92

Query: 327 GRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN--FRKIAVVVFPKPEDLK 384
             +N + + ++SR S    N +I+ T        +   +     +     V+     +  
Sbjct: 93  PYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSY 152

Query: 385 IRSVKRFKEMGKE 397
           + +++R++ M  +
Sbjct: 153 LGTIERYETMYAD 165

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* Length = 416

 Score = 45.3 bits (106), Expect = 2e-05
 Identities = 19/135 (14%), Positives = 44/135 (32%), Gaps = 29/135 (21%)

Query: 258 PTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHN 317
            +     + EV++ VG P +GK+T+ ++ +       Y+ +  + +    +     +   
Sbjct: 250 SSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAG---YVHVNRDTLGSWQRCVSSCQA-- 304

Query: 318 YSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVV 376
                                 A R  +  +ID TN    +R R ++   +         
Sbjct: 305 ----------------------ALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFN 342

Query: 377 FPKPEDL-KIRSVKR 390
           F    +  +  +  R
Sbjct: 343 FCATIEQARHNNRFR 357

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Length = 253

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 3/132 (2%)

Query: 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMG 327
            +++ G   +GKTT      K+      I+ G +   +      L +++           
Sbjct: 34  AILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYT-KD 92

Query: 328 RANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN--FRKIAVVVFPKPEDLKI 385
            A  + + L+++ S    N +I+ T       K+  +L  N  +     ++  KPE   +
Sbjct: 93  FAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYL 152

Query: 386 RSVKRFKEMGKE 397
            ++ R++E+   
Sbjct: 153 STLIRYEELYII 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	403
3toj_A	213	SET1/ASH2 histone methyltransferase complex subun;	100.0
2yyo_A	171	SPRY domain-containing protein 3; NPPSFA, national	100.0
3emw_A	217	SPRY domain-containing SOCS box protein 2; apoptos	99.91
2jk9_A	212	SPRY domain-containing SOCS box protein 1; transcr	99.91
2afj_A	226	Gene rich cluster, C9 gene; beta sandwich, gene re	99.87
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.56
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.44
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.43
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.36
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.35
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.34
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.3
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.29
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.28
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.14
2wl1_A	191	Pyrin, marenostrin; amyloidosis, polymorphism, cyt	99.1
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.08
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.08
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.07
2vok_A	188	52 kDa RO protein; polymorphism, immune system, me	99.07
2fbe_A	201	Predicted: similar to RET finger protein-like 1; d	99.06
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.05
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.05
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.03
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.0
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.99
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.99
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	98.97
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	98.97
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.97
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	98.96
3uv9_A	186	TRIM5alpha, tripartite motif-containing protein 5;	98.95
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	98.95
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	98.93
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	98.92
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	98.91
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.9
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	98.9
3kb5_A	193	Tripartite motif-containing protein 72; B30.2, gus	98.89
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	98.86
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.86
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.85
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	98.85
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	98.84
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.82
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.76
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	98.75
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.72
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	98.7
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.69
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.69
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.65
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	98.63
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.63
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.62
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.62
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.6
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.59
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	98.52
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.51
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.5
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.49
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.48
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.47
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	98.47
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.43
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.42
4b3n_A	602	Maltose-binding periplasmic protein, tripartite mo	98.4
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.39
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.37
1via_A	175	Shikimate kinase; structural genomics, transferase	98.37
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.36
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	98.32
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.32
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.3
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.29
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.26
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.2
2e63_A	170	KIAA1787 protein; structure genomics, neuralized d	98.2
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	98.19
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	98.15
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.1
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	98.1
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	98.05
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	98.05
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	98.04
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.02
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.02
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.99
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	97.99
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.99
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.96
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.94
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	97.91
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.91
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.9
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.87
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	97.8
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.8
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.79
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.79
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.78
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	97.67
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	97.64
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.63
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.58
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	97.58
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.56
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	97.55
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.51
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.38
2yue_A	168	Protein neuralized; structure genomics, NEUZ(NHR)	97.18
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.14
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	97.11
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	97.1
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.07
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.05
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.05
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.03
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.02
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.94
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.92
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.8
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.8
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.8
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.79
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.78
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.76
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.7
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.7
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.64
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.56
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.53
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.51
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.46
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.41
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.37
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.25
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.19
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.13
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.12
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.1
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.08
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	96.02
3co5_A	143	Putative two-component system transcriptional RES	96.0
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.93
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.9
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.89
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.88
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.88
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.87
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.8
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.79
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	95.76
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.76
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	95.73
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.72
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.69
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.66
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.62
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.62
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	95.54
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.47
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.45
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.42
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.42
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.41
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	95.4
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.36
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.34
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.34
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.31
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.29
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.28
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.27
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	95.24
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	95.23
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.21
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.19
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	95.18
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.15
3pvs_A	447	Replication-associated recombination protein A; ma	95.15
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.14
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.13
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.1
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.06
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	95.06
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.05
3bos_A	242	Putative DNA replication factor; P-loop containing	95.04
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	95.03
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.02
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.01
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	94.97
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	94.96
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	94.93
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	94.92
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	94.92
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	94.89
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	94.88
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	94.87
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	94.86
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	94.82
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	94.8
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	94.74
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	94.73
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	94.64
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	94.63
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	94.61
2og2_A	359	Putative signal recognition particle receptor; nuc	94.61
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	94.57
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	94.56
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	94.55
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	94.52
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	94.42
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	94.4
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.37
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.37
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	94.34
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	94.32
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	94.32
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	94.31
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.23
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	94.23
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	94.22
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	94.2
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.12
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	94.1
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.06
2xxa_A	433	Signal recognition particle protein; protein trans	94.02
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	94.01
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	94.01
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	94.0
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	93.97
2eyu_A	261	Twitching motility protein PILT; pilus retraction	93.96
1tue_A	212	Replication protein E1; helicase, replication, E1E	93.95
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	93.94
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	93.9
2qgz_A	308	Helicase loader, putative primosome component; str	93.86
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	93.82
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	93.8
2ghi_A	260	Transport protein; multidrug resistance protein, M	93.69
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	93.68
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	93.66
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	93.66
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	93.65
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	93.65
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	93.61
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	93.61
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	93.6
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	93.6
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	93.58
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.56
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	93.55
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	93.55
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	93.53
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	93.51
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	93.5
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	93.46
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	93.46
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	93.41
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	93.38
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	93.33
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	93.33
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	93.27
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	93.25
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	93.25
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	93.24
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	93.18
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	93.15
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	93.14
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	93.1
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	93.1
1b0u_A	262	Histidine permease; ABC transporter, transport pro	93.1
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	93.04
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	93.02
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	93.02
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	92.99
1g6h_A	257	High-affinity branched-chain amino acid transport	92.98
2z43_A	324	DNA repair and recombination protein RADA; archaea	92.97
1ji0_A	240	ABC transporter; ATP binding protein, structural g	92.97
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	92.96
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	92.95
2r44_A	331	Uncharacterized protein; putative ATPase, structur	92.95
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	92.94
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	92.94
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	92.93
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	92.92
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	92.9
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	92.89
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	92.89
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	92.88
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	92.87
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	92.87
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	92.84
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	92.84
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	92.83
1sgw_A	214	Putative ABC transporter; structural genomics, P p	92.83
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	92.83
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	92.82
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	92.82
2hf9_A	226	Probable hydrogenase nickel incorporation protein	92.81
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	92.79
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	92.79
2wji_A	165	Ferrous iron transport protein B homolog; membrane	92.79
2ged_A	193	SR-beta, signal recognition particle receptor beta	92.75
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	92.73
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	92.73
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	92.72
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	92.72
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	92.71
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	92.71
2ewv_A	372	Twitching motility protein PILT; pilus retraction	92.69
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	92.68
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	92.61
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	92.6
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	92.6
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	92.58
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	92.56
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	92.54
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	92.54
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	92.53
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	92.53
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	92.52
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	92.49
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	92.48
1nrj_B	218	SR-beta, signal recognition particle receptor beta	92.47
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	92.44
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	92.43
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	92.4
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	92.39
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	92.39
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	92.37
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	92.37
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	92.36
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	92.36
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	92.36
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	92.33
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	92.32
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	92.31
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	92.3
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	92.3
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	92.3
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	92.29
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	92.26
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	92.24
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	92.18
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	92.16
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	92.12
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	92.12
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	92.1
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	92.07
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	92.05
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	92.04
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	92.02
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	92.02
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	92.02
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	92.01
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	91.97
3kta_A	182	Chromosome segregation protein SMC; structural mai	91.95
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	91.93
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	91.92
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	91.91
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	91.91
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	91.89
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	91.83
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	91.82
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	91.8
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	91.75
1p9r_A	418	General secretion pathway protein E; bacterial typ	91.71
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	91.69
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	91.66
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	91.62
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	91.61
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	91.6
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	91.6
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	91.6
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	91.58
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	91.57
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	91.55
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	91.54
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	91.54
2chq_A	319	Replication factor C small subunit; DNA-binding pr	91.51
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	91.48
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	91.46
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	91.46
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	91.44
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	91.41
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	91.41
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	91.41
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	91.39
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	91.38
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	91.36
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	91.31
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	91.3
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	91.26
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	91.24
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	91.24
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	91.21
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	91.2
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	91.2
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	91.18
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	91.17
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	91.15
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	91.13
1u94_A	356	RECA protein, recombinase A; homologous recombinat	91.09
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	91.07
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	91.06
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	91.02
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	91.01
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	91.01
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	91.01
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	90.96
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	90.95
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	90.91
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	90.89
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	90.87
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	90.87
1xp8_A	366	RECA protein, recombinase A; recombination, radior	90.84
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	90.84
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	90.8
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	90.8
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	90.76
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	90.74
2fh5_B	214	SR-beta, signal recognition particle receptor beta	90.72
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	90.71
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	90.7
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	90.69
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	90.65
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	90.64
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	90.58
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	90.54
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	90.53
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	90.53
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	90.52
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	90.51
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	90.51
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	90.48
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	90.44
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	90.43
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	90.4
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	90.37
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	90.36
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	90.34
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	90.33
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	90.26
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	90.23
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	90.21
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	90.21
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	90.19
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	90.18
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	90.16
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	90.15
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	89.99
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	89.89
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	89.85
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	89.82
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	89.77
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	89.73
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	89.63
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	89.61
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	89.58
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	89.56
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	89.56
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	89.55
2fna_A	357	Conserved hypothetical protein; structural genomic	89.46
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	89.34
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	89.33
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	89.21
3llu_A	196	RAS-related GTP-binding protein C; structural geno	89.15
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	89.14
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	89.14
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	89.08
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	89.03
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	89.02
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	88.9
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	88.79
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	88.77
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	88.74
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	88.55
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	88.53
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	88.51
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	88.48
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	88.45
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	88.44
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	88.26
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	88.24
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	88.05
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	88.03
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	88.01
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	87.82
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	87.82
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	87.82
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	87.74
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	87.69
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	87.66
3io5_A	333	Recombination and repair protein; storage dimer, i	87.54
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	87.44
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	87.44
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	87.36
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	87.21

>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}

Probab=100.00  E-value=6e-38  Score=290.42  Aligned_cols=175  Identities=25%  Similarity=0.298  Sum_probs=152.7

Q ss_pred             CcEEeCcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEec
Q 015668           42 QRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSR  121 (403)
Q Consensus        42 ~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~  121 (403)
                      ..|+||+.|++++|.||+|+++++..      ++|++|||++++.+|+|||||+|.+..          ..++++|||++
T Consensus        11 ~~v~ld~~d~~~~l~ls~d~l~v~~~------~~~~~vra~~~v~~G~~YfEV~v~~~~----------~~~~~~iG~a~   74 (213)
T 3toj_A           11 ERVLLALHDRAPQLKISDDRLTVVGE------KGYSMVRASHGVRKGAWYFEITVDEMP----------PDTAARLGWSQ   74 (213)
T ss_dssp             CCCCEEEEEECTTSEECTTSSEEECC------SSCEEEEESCCBSSEEEEEEEEEEECC----------TTCEEEEEEEC
T ss_pred             CeEEechhhCCCCEEEcCCCcEEEeC------CceeEEEeCCCccCCeEEEEEEEeecC----------CCceEEEEecc
Confidence            46999999999999999999999863      689999999999999999999999741          35899999999


Q ss_pred             CCCC-CCCCCCCCcceeEe-cCCceeeCCCcccCCCCCCCCCEEEEEEecCCC-----CCceEEEEeCcccccccccccC
Q 015668          122 GDDP-VGKLGETEQSFGFG-GTGKFSHGGNFLNFGEKFGVGDTIICAIDLESK-----PLATIGFAKNGKWLGTAKQFDA  194 (403)
Q Consensus       122 ~~~~-~~~lG~d~~Sygy~-~~G~~~~~~~~~~yG~~f~~gDVIGc~ldl~~~-----p~~~i~ftkNG~~lg~af~~~~  194 (403)
                      ...+ ..++|+|.+||||+ .+|+++|++....||++|++||||||+||++..     +.++|+||+||+.||+||+.  
T Consensus        75 ~~~~~~~~~G~d~~S~gy~~~~G~~~h~~~~~~yg~~~~~GDvIGc~ld~~~~~~~~~~~g~i~Ft~NG~~lg~aF~~--  152 (213)
T 3toj_A           75 PLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNGVNQGVAYKD--  152 (213)
T ss_dssp             TTSCTTSCTTSSTTEEEEETTTTCEEETTEEECCSCCCCTTCEEEEEEEECCC-----CCCEEEEEETTEEEEEEEES--
T ss_pred             CCcccccCCCCCCCcEEEECCCCeEEeCCcCcccCCCCCCCCEEEEEEEcCCCccccCCccEEEEEeCCeeeeeeEEc--
Confidence            8764 56899999999997 689999998888999999999999999999862     22599999999999999972  


Q ss_pred             CCCCCccccchhhcccCCCceEeEEEEe-CeEEEEEccCCCCCCCcc-cceeccccc
Q 015668          195 GSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVEQGLIPVE-GYKSWVSAL  249 (403)
Q Consensus       195 ~~~~l~~~~~~~~g~~~~~~~fP~v~l~-~~~v~~nFG~~~~~~p~~-g~~p~~~~~  249 (403)
                       +              ....|||+|++. +++|++|||+.+.|+|++ +|+|+.+.+
T Consensus       153 -~--------------~~~~lyPavsl~~~~~v~~NFG~~F~~~p~~~~~~~~~~~~  194 (213)
T 3toj_A          153 -I--------------FEGVYFPAISLYKSCTVSINFGPCFKYPPKDLTYRPMSDMG  194 (213)
T ss_dssp             -C--------------CSSCBEEEEEEESSCEEEEECSSSCSSCCSSCCCEEGGGGG
T ss_pred             -C--------------CCCcEEEEEEcCCCCEEEEECCCCCccCCCCCceEcHHHhc
Confidence             1              146899999996 999999999977787776 799997754

>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.5e-36  Score=269.35  Aligned_cols=160  Identities=21%  Similarity=0.209  Sum_probs=132.3

Q ss_pred             CcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCCC-
Q 015668           47 NPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDP-  125 (403)
Q Consensus        47 ~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~~~~~-  125 (403)
                      |+.||+.+|.|+.|.|++++.     ...|++||||+++..|+|||||+|.+..          ..++++|||++...+ 
T Consensus         3 s~~dr~~~l~~~~d~l~~~~~-----~~~~~~vra~~p~~~g~~YfEv~i~~~~----------~~~~~~IG~a~~~~~~   67 (171)
T 2yyo_A            3 SGSSGFKHILVDGDTLSYHGN-----SGEVGCYVASRPLTKDSNYFEVSIVDSG----------VRGTIAVGLVPQYYSL   67 (171)
T ss_dssp             ---CEEESEEEETTEEEECCC-----SSCCEEEECSSCCCSSSCEEEEEEEEET----------TTCCCEEEEECTTCCT
T ss_pred             CcccCcceEEEcCCEEEEeCC-----CCceeEEEECCCCCCCCEEEEEEEEECC----------CCcEEEEEecCCCCCC
Confidence            678999999999998888764     2589999999999999999999999863          358999999998765 


Q ss_pred             CCCCCCCCcceeEec-CCceeeCC-CcccCCCCCCCCCEEEEEEecCC--CCCceEEEEeCcccccccccccCCCCCCcc
Q 015668          126 VGKLGETEQSFGFGG-TGKFSHGG-NFLNFGEKFGVGDTIICAIDLES--KPLATIGFAKNGKWLGTAKQFDAGSNGLGV  201 (403)
Q Consensus       126 ~~~lG~d~~Sygy~~-~G~~~~~~-~~~~yG~~f~~gDVIGc~ldl~~--~p~~~i~ftkNG~~lg~af~~~~~~~~l~~  201 (403)
                      ...+|+|.+||||++ +|+++|+. ....||++|++||||||+||+++  .+.++|+|||||+.||+||..   +     
T Consensus        68 ~~~~G~d~~S~gy~~~dG~~~~~~~~~~~yg~~f~~GDvIGc~id~~~~~~~~~~i~Ft~NG~~lg~af~~---~-----  139 (171)
T 2yyo_A           68 DHQPGWLPDSVAYHADDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMP---M-----  139 (171)
T ss_dssp             TSCTTSSTTCEEEETTTCCEESSSSCCBCCSCCCCTTCEEEEEECGGGGSSSCEEEEEEETTEEEEEEEES---S-----
T ss_pred             ccCCCccCCEEEEEcCCCeEEeCCCCCCcCCCCCCCCCEEEEEEEeccCCCCcEEEEEEECCEEcCceecC---C-----
Confidence            568999999999997 69998874 56899999999999999999972  112799999999999999972   1     


Q ss_pred             ccchhhcccCCCceEeEEEEe--CeEEEEEccCCCCCCC
Q 015668          202 VDSAVKERQCESAVFPHILLK--NVVVVMQFSVEQGLIP  238 (403)
Q Consensus       202 ~~~~~~g~~~~~~~fP~v~l~--~~~v~~nFG~~~~~~p  238 (403)
                               ....|||+|++.  +++|++|||+.+.+||
T Consensus       140 ---------~~~~lyPaV~l~~~g~~v~vNFG~~~~~pp  169 (171)
T 2yyo_A          140 ---------SPDGLFPAVGMHSLGEEVRLHLNAELSGPS  169 (171)
T ss_dssp             ---------CSSSCEEEEEECSTTEEEEEETTCCC----
T ss_pred             ---------cCCCEEEEEEEecCCCEEEEECCCCCcCCC
Confidence                     146999999998  7999999999766654

>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A

Probab=99.91  E-value=5.8e-24  Score=197.00  Aligned_cols=157  Identities=24%  Similarity=0.422  Sum_probs=130.5

Q ss_pred             CCcEEeCcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEe
Q 015668           41 KQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS  120 (403)
Q Consensus        41 ~~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s  120 (403)
                      +..++||+.++..+|.||+|+++++....   .+.|..||++.++.+|+|||||+|....          ....++|||+
T Consensus        41 ~~~~tlDp~ta~~~L~lSed~~~v~~~~~---~~~~~~Vl~~~~~~sGrhYWEV~v~~~~----------~g~~~~vGv~  107 (217)
T 3emw_A           41 QRRHGWNPKDCSENIEVKEGGLYFERRPV---AQSTDGARGKRGYSRGLHAWEISWPLEQ----------RGTHAVVGVA  107 (217)
T ss_dssp             HHHTSEEEEEECTTEEEEGGGTEEEECCB---SSCEEEEEESCCBSSSEEEEEEECCGGG----------CTTCCEEEEE
T ss_pred             ccceEeCcccCCCCEEECCCCeEEEECcc---CCCCCEEEeCCCccCccEEEEEEEcccC----------CCCceeEEEE
Confidence            45789999999999999999999876421   2458899999999999999999998531          1247999999


Q ss_pred             cCCCC------CCCCCCCCcceeEe-cCCceeeCCCc---ccCC-----CCCCCCCEEEEEEecCCCCCceEEEEeCccc
Q 015668          121 RGDDP------VGKLGETEQSFGFG-GTGKFSHGGNF---LNFG-----EKFGVGDTIICAIDLESKPLATIGFAKNGKW  185 (403)
Q Consensus       121 ~~~~~------~~~lG~d~~Sygy~-~~G~~~~~~~~---~~yG-----~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~  185 (403)
                      +...+      ...+|++..||+|+ .+|.++|++..   ..|+     +.|..+|+|||+||++.   ++|+|++||+.
T Consensus       108 ~~~~~r~~~g~~~~lG~~~~SW~l~~~~g~~~h~~~~~~~~~~~~~~~~~~~~~~d~IGV~LD~~~---G~LsFy~ng~~  184 (217)
T 3emw_A          108 TALAPLQTDHYAALLGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEE---GTLGYAIGGTY  184 (217)
T ss_dssp             CTTSCCEESSSCCCTTSSTTEEEEETTTCBEESSCCSSCCCBSSSSSTTCCCCCCSEEEEEEETTT---TEEEEEETTEE
T ss_pred             cCccccccCCccccccCCCCEEEEEeCCCcEEeCCcccCCccccccccccCCCCCCEEEEEEEcCC---CEEEEEECCeE
Confidence            87643      45799999999997 57888888753   3675     56899999999999998   99999999999


Q ss_pred             ccccccccCCCCCCccccchhhcccCCCceEeEEEEe--CeEEEEEc
Q 015668          186 LGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQF  230 (403)
Q Consensus       186 lg~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~--~~~v~~nF  230 (403)
                      +|+||+.   .              ...+|||+|++.  +++|+++|
T Consensus       185 lg~aF~~---~--------------~~~~LyP~~sl~~g~~~v~l~~  214 (217)
T 3emw_A          185 LGPAFRG---L--------------KGRTLYPAVSAVWGQCQVRIRY  214 (217)
T ss_dssp             EEEEECC---C--------------TTCCBEEEEEECSTTCEEEEEE
T ss_pred             eEEEEEC---C--------------CCCEEEEEEEeccCCcEEEEEe
Confidence            9999972   1              256899999996  88998876

>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A

Probab=99.91  E-value=1.4e-23  Score=193.89  Aligned_cols=157  Identities=20%  Similarity=0.321  Sum_probs=128.6

Q ss_pred             CCcEEeCcCCCCCCeEEcCCC-ceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEE
Q 015668           41 KQRVVLNPADCDLDFDIEDNG-LKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGT  119 (403)
Q Consensus        41 ~~~v~l~~~d~~~~l~is~d~-l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~  119 (403)
                      +..++||+.+++.+|.|++|+ ++++...   ....|.+||++.++.+|+|||||+|....          ..+.++|||
T Consensus        30 ~~~~tldp~ta~~~L~lsed~~~~~~~~~---~~~~~~~Vlg~~~f~sGrhYWEV~v~~~~----------~~~~w~vGV   96 (212)
T 2jk9_A           30 QLLHSWNNNDRSLNVFVKEDDKLIFHRHP---VAQSTDAIRGKVGYTRGLHVWQITWAMRQ----------RGTHAVVGV   96 (212)
T ss_dssp             HHHTSEEEEEECTTEEEETTEEEEEEECC---BTTEEEEEEESCCBCSSEEEEEEECCGGG----------CTTCCEEEE
T ss_pred             ccccccChhhcCCceEEeCCCeEEEEECC---CCCccceEEcCCCccCCeEEEEEEEeccc----------CCCcEEEEE
Confidence            467999999999999999997 4665321   13579999999999999999999997421          236789999


Q ss_pred             ecCCCC------CCCCCCCCcceeEec-CCceeeCCCcc---------cCCCCCCCCCEEEEEEecCCCCCceEEEEeCc
Q 015668          120 SRGDDP------VGKLGETEQSFGFGG-TGKFSHGGNFL---------NFGEKFGVGDTIICAIDLESKPLATIGFAKNG  183 (403)
Q Consensus       120 s~~~~~------~~~lG~d~~Sygy~~-~G~~~~~~~~~---------~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG  183 (403)
                      ++....      ...+|.+..||+|+. +|+++|++...         .|++.|.++|+|||+||++.   ++|+|++||
T Consensus        97 ~~~~~~r~~~g~~~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~IGv~LD~e~---G~lsFy~ng  173 (212)
T 2jk9_A           97 ATADAPLHSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDD---GTLSFIVDG  173 (212)
T ss_dssp             ECTTSCCEEESSCCCTTSSTTEEEEETTTTEEEESTTTSCCEESSTTSCTTCCCCCCSEEEEEEETTT---TEEEEEETT
T ss_pred             EcCCccccccCcccccccCCCcEeeECCCCcEEECCcccCccccCcccccCCcCCCCCEEEEEEECCC---CEEEEEECC
Confidence            997643      246799999999985 78888876542         25788899999999999998   899999999


Q ss_pred             ccccccccccCCCCCCccccchhhcccCCCceEeEEEEe--CeEEEEEc
Q 015668          184 KWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQF  230 (403)
Q Consensus       184 ~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~--~~~v~~nF  230 (403)
                      +.++.||+.   .              ...+|||++++.  +++|.+||
T Consensus       174 ~~l~~aF~~---~--------------~~~~l~P~f~l~~g~~~v~l~~  205 (212)
T 2jk9_A          174 QYMGVAFRG---L--------------KGKKLYPVVSAVWGHCEIRMRY  205 (212)
T ss_dssp             EEEEEEECC---C--------------TTCCBEEEEEECCTTCEEEEEE
T ss_pred             EEeEEEecc---C--------------CCCEEeeEEEEEcCCcEEEEEE
Confidence            999999972   1              146999999995  88999998

>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22

Probab=99.87  E-value=6.4e-22  Score=184.49  Aligned_cols=160  Identities=24%  Similarity=0.408  Sum_probs=128.2

Q ss_pred             CCcEEeCcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEe
Q 015668           41 KQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS  120 (403)
Q Consensus        41 ~~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s  120 (403)
                      +..++||+.+++.+|.||+|+++++....   .+.+..||++.++.+|+|||||+|....          ..+.+.|||+
T Consensus        38 ~~~~tLDp~ta~~~L~lSed~~~v~~~~~---~~~~~~Vlg~~~f~sGrhYWEV~V~~~~----------~~~~w~vGV~  104 (226)
T 2afj_A           38 QRHHGWNPKDCSENIDVKEGGLCFERRPV---AQSTDGVRGKRGYSRGLHAWEISWPLEQ----------RGTHAVVGVA  104 (226)
T ss_dssp             HHHHSSCCSSSCCSSEEETTTTEEECSSC---TTTSSSEEECCCCCCSEEEEEEECCCCS----------SSCCCEEEEE
T ss_pred             ccccEEccccCCCCEEEeCCCEEEEECCC---CCCcCeEEECCCccCCEEEEEEEEeccC----------CCCCEEEEec
Confidence            55689999999999999999998874321   2456799999999999999999997521          1367999999


Q ss_pred             cCCCC------CCCCCCCCcceeEe-cCCceeeCCCc---ccC-----CCCCCCCCEEEEEEecCCCCCceEEEEeCccc
Q 015668          121 RGDDP------VGKLGETEQSFGFG-GTGKFSHGGNF---LNF-----GEKFGVGDTIICAIDLESKPLATIGFAKNGKW  185 (403)
Q Consensus       121 ~~~~~------~~~lG~d~~Sygy~-~~G~~~~~~~~---~~y-----G~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~  185 (403)
                      +....      ...+|.+..||+|. .+|.++|++..   ..|     +..|.++|+|||+||++.   ++|+|++||+.
T Consensus       105 ~~s~~~~r~~~~~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~rIGV~LD~e~---G~lSFy~ng~~  181 (226)
T 2afj_A          105 TALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEE---GTLGYSIGGTY  181 (226)
T ss_dssp             ESSCCCSSCSSSCCCCCSCEEEEEEGGGTSTTSSSSCCSCSSSSCCSGGGGSCCSSCEEEEEETTT---TEEEEESTTCS
T ss_pred             CCccccccccccccccCCCCcEEEEcCCCeEEECccccCcccccccccCCcCCCCCEEEEEEECCC---CEEEEEECCeE
Confidence            87642      34689999999998 47787787663   235     446899999999999998   99999999999


Q ss_pred             ccccccccCCCCCCccccchhhcccCCCceEeEEEEe--CeEEEEEccCC
Q 015668          186 LGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQFSVE  233 (403)
Q Consensus       186 lg~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~--~~~v~~nFG~~  233 (403)
                      ++.+|+..                 ...+|||++++.  +++|.++|-..
T Consensus       182 l~~aF~~~-----------------~~~~L~P~f~l~~g~~~v~l~~~~g  214 (226)
T 2afj_A          182 LGPAFRGL-----------------KGRTLYPSVSAVWGQCQVRIRYMGE  214 (226)
T ss_dssp             CSTTHHHH-----------------HHHCCEEEEEECCTTSCCEEEEESC
T ss_pred             eEEEEEcC-----------------CCCEEEEEEEcccCCCEEEEEEcCC
Confidence            99998721                 135899999985  67888887554

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.56  E-value=4.8e-14  Score=124.49  Aligned_cols=120  Identities=19%  Similarity=0.302  Sum_probs=86.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHH-hCCCccEEEeccHHHHHHhhcCCCcc-cCCChHHHHHHHHHHHHHHHHHHHHHh--
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVK-DHPEKRYILLGTNLILEQMKVPGLLR-KHNYSERFQCLMGRANAIFDVLLSRAS--  341 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~-~~~~~~~v~ls~D~ir~~l~~~g~~~-~~~~~~~~~~~~~~a~~~~~~ll~~al--  341 (403)
                      +.+|+|+|+|||||||+|+.|++ .+.   +.+|+.|.+|+.+... ... ...+....+...   .+.+..++..++  
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~---~~~i~~d~~r~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~   74 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPG---FYNINRDDYRQSIMAH-EERDEYKYTKKKEGIV---TGMQFDTAKSILYG   74 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTT---EEEECHHHHHHHHTTS-CCGGGCCCCHHHHHHH---HHHHHHHHHHHHTS
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCC---cEEecHHHHHHHhhCC-CccchhhhchhhhhHH---HHHHHHHHHHHHhh
Confidence            47899999999999999999998 454   8899999999876421 110 011222212211   223334555667  


Q ss_pred             -cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          342 -RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       342 -~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                       ..|.+||+|.++.+...|..+.+.+..++ ++.+|++++| +++++|+.+|..
T Consensus        75 ~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~  128 (181)
T 1ly1_A           75 GDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT  128 (181)
T ss_dssp             CSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc
Confidence             78999999999999988887766666555 6678899997 899999999863

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.44  E-value=4.6e-13  Score=135.34  Aligned_cols=105  Identities=20%  Similarity=0.237  Sum_probs=84.5

Q ss_pred             CCCCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHh
Q 015668          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS  341 (403)
Q Consensus       262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al  341 (403)
                      ....+.+|+|+|+|||||||+|++|++.+.   +.+|+.|.++                .+..+.+        .+..++
T Consensus       254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~~---~~~i~~D~~~----------------~~~~~~~--------~~~~~l  306 (416)
T 3zvl_A          254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAG---YVHVNRDTLG----------------SWQRCVS--------SCQAAL  306 (416)
T ss_dssp             CCSSCCEEEEESCTTSSHHHHHHHHTGGGT---CEECCGGGSC----------------SHHHHHH--------HHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHhcC---cEEEccchHH----------------HHHHHHH--------HHHHHH
Confidence            345689999999999999999999999886   8899888631                1122222        233445


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhccc
Q 015668          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKE  393 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~  393 (403)
                      ..|.+||+|+||..+..|..+++.+++++ .+.+|+++++ +++++|+.+|...
T Consensus       307 ~~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~  360 (416)
T 3zvl_A          307 RQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMT  360 (416)
T ss_dssp             HTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHH
T ss_pred             hcCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhccc
Confidence            78999999999999999999888887776 7888999997 8999999999763

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.43  E-value=1.6e-12  Score=124.80  Aligned_cols=121  Identities=19%  Similarity=0.305  Sum_probs=86.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHh---c
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS---R  342 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al---~  342 (403)
                      +.+|+++|+|||||||+|+.|++.+.  .+.+|+.|.+|+.+.....-....+....+..   ..+.+..++..++   .
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~--~~~~i~~D~~r~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~   76 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNP--GFYNINRDDYRQSIMAHEERDEYKYTKKKEGI---VTGMQFDTAKSILYGGD   76 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHST--TEEEECHHHHHHHHTTSCCCC---CCHHHHHH---HHHHHHHHHHHHTTSCT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCC--CcEEecccHHHHHhccCCcccccccchhhhhH---HHHHHHHHHHHHHhhcc
Confidence            46899999999999999999998753  28899999998876421000000122221211   1123344556667   7


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668          343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      .|.+||+|.++..+..|..+.+.+..++ ++.+|++++| +++++|+.+|.
T Consensus        77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~  127 (301)
T 1ltq_A           77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG  127 (301)
T ss_dssp             TCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCG
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhcc
Confidence            8999999999999988887766666655 6778899997 89999999987

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.36  E-value=1.7e-12  Score=122.88  Aligned_cols=117  Identities=23%  Similarity=0.428  Sum_probs=82.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR  342 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~  342 (403)
                      .+.+|+|+|+|||||||+|+.|++.+.  +..+++++.|.+++.+.  +      |....+.....+   ....+..++.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~--~------~~~~~e~~~~~~---~~~~i~~~l~   71 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFP--V------WKEKYEEFIKKS---TYRLIDSALK   71 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSS--S------CCGGGHHHHHHH---HHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHh--h------hhHHHHHHHHHH---HHHHHHHHhh
Confidence            367999999999999999999998632  11245569999887643  2      111112111111   1234444556


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhccc
Q 015668          343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKE  393 (403)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~  393 (403)
                      . ..||+|.++.++..|..+.+.+...+ +..+|++++| +++++|+.+|.+.
T Consensus        72 ~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~  123 (260)
T 3a4m_A           72 N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEK  123 (260)
T ss_dssp             T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCS
T ss_pred             C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCC
Confidence            6 89999999999998887766666655 6788899987 8999999998643

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.35  E-value=6.9e-12  Score=111.96  Aligned_cols=119  Identities=16%  Similarity=0.155  Sum_probs=77.9

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHH-HHHHHHHHHHHHHHHHHhcC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQ-CLMGRANAIFDVLLSRASRT  343 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~-~~~~~a~~~~~~ll~~al~~  343 (403)
                      .+.+|+++|+|||||||+++.|++.+.   +.+++.|.+++.+.. +. .. . ...+. .+...+.+.+...+..++..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l~---~~~i~~D~~~~~~~~-~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~   76 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGLR---LPLLSKDAFKEVMFD-GL-GW-S-DREWSRRVGATAIMMLYHTAATILQS   76 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHHH-HH-CC-C-SHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcC---CeEecHHHHHHHHHH-hc-Cc-c-chHHHHHhhHHHHHHHHHHHHHHHhC
Confidence            468999999999999999999999875   667888999877642 11 00 1 11221 12112222233444555678


Q ss_pred             CCeEEEeCCCCCHH-HHHHHHHHHhc-CC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          344 PRNFIIDQTNVFKS-ARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       344 g~~vIlD~Tn~~~~-~R~~~~~~~~~-~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      |.+||+|.++ ... .++.+ ..++. .. +..+|++++| +++++|+.+|..
T Consensus        77 g~~vi~d~~~-~~~~~~~~~-~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~  127 (193)
T 2rhm_A           77 GQSLIMESNF-RVDLDTERM-QNLHTIAPFTPIQIRCVASGDVLVERILSRIA  127 (193)
T ss_dssp             TCCEEEEECC-CHHHHHHHH-HHHHHHSCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             CCeEEEecCC-CCHHHHHHH-HHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence            9999999988 333 22233 22333 33 5678899887 899999998864

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.34  E-value=3.2e-12  Score=122.87  Aligned_cols=132  Identities=14%  Similarity=0.184  Sum_probs=87.9

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcc-cCCChHHHHHHH-HHHHHHHHHHHHHHhc
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLR-KHNYSERFQCLM-GRANAIFDVLLSRASR  342 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~-~~~~~~~~~~~~-~~a~~~~~~ll~~al~  342 (403)
                      .+.+|+|+|+|||||||+|+.|++.++. .+++||.|.+|..+.  +... ...+........ .........+++.++.
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~~-~~~~Is~D~~R~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~  108 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQG-NVIVIDNDTFKQQHP--NFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSD  108 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTT-CCEEECTHHHHTTST--THHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEechHhHHhch--hhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHh
Confidence            4789999999999999999999998742 378999999886532  1000 000000000111 1112223345566678


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHH----HHHHHHhcccc---Ccccc
Q 015668          343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDL----KIRSVKRFKEM---GKEQI  399 (403)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~----~~R~~~R~~~~---g~~Vp  399 (403)
                      .|.+||+|.++.....+..+++.+++.+ .+.+++|.+| +++    ++|+.+|....   ++.+|
T Consensus       109 ~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~  174 (287)
T 1gvn_B          109 QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATP  174 (287)
T ss_dssp             HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCC
T ss_pred             cCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            8999999999998877777777777765 6677888886 677    88888886543   34554

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.30  E-value=9.4e-12  Score=117.14  Aligned_cols=125  Identities=17%  Similarity=0.181  Sum_probs=86.0

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCC-CcccC-CChHHHHHHHHH-HHHHHHHHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPG-LLRKH-NYSERFQCLMGR-ANAIFDVLLSRA  340 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g-~~~~~-~~~~~~~~~~~~-a~~~~~~ll~~a  340 (403)
                      ..+.+|+|+|+|||||||+|+.|++.++. .+++++.|.+|..+.... ..... .....   ..+. +.+....++..+
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~-~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~---~~~~~~~~~~~~~~~~~  105 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQG-NIVIIDGDSFRSQHPHYLELQQEYGKDSVE---YTKDFAGKMVESLVTKL  105 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTTT-CCEEECGGGGGTTSTTHHHHHTTCSSTTHH---HHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcCC-CcEEEecHHHHHhchhHHHHHHHcCchHHH---HhhHHHHHHHHHHHHHH
Confidence            45789999999999999999999998752 367899998876431000 00000 00111   1111 222334455556


Q ss_pred             hcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      +..|.++|||.++.....+..+++.+++.+ .+.++++.+| +++++|+.+|..
T Consensus       106 ~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~~  159 (253)
T 2p5t_B          106 SSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRYE  159 (253)
T ss_dssp             HHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHHH
T ss_pred             HhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHH
Confidence            678889999999888777777788887765 6777888887 899999999964

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.29  E-value=3.1e-11  Score=125.25  Aligned_cols=129  Identities=16%  Similarity=0.041  Sum_probs=81.8

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHHHHhhcCCCccc-C-CChHH-HHHHHHHHHHHHHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRK-H-NYSER-FQCLMGRANAIFDVLLS  338 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir~~l~~~g~~~~-~-~~~~~-~~~~~~~a~~~~~~ll~  338 (403)
                      ..+.+|+|+|+|||||||+|++|++.+.  .....+|+.|++|+++........ . ..... +....+.+..++..+..
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~  112 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKS  112 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999988763  112578899999988752211100 0 01111 11111222222322222


Q ss_pred             HH-hcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh--HHHHHHHHHhcc
Q 015668          339 RA-SRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP--EDLKIRSVKRFK  392 (403)
Q Consensus       339 ~a-l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p--e~~~~R~~~R~~  392 (403)
                      .+ ...|.+||+|+||..+..|..+++.+++.+ .+.++++.++  +.+.+|+.+|..
T Consensus       113 ~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~  170 (520)
T 2axn_A          113 YLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKI  170 (520)
T ss_dssp             HHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTT
T ss_pred             HHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhh
Confidence            22 268999999999999999998877777655 5666676654  555666656653

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.28  E-value=2.5e-11  Score=107.08  Aligned_cols=120  Identities=17%  Similarity=0.155  Sum_probs=78.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcC-CCc-ccCC-------C-hHHHHHHHHHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVP-GLL-RKHN-------Y-SERFQCLMGRANAIFDV  335 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~-g~~-~~~~-------~-~~~~~~~~~~a~~~~~~  335 (403)
                      +.+|+++|+|||||||+|+.|++.++. .++.++.|.+++.+... +.. ....       + ...+.......    ..
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~   77 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPE-PWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAW----AE   77 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSS-CEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHH----HH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCC-CeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHH----HH
Confidence            468999999999999999999998863 37788889888764310 000 0000       0 12233332222    22


Q ss_pred             HHHHHhcCCCeEEEeCCCCC-HHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          336 LLSRASRTPRNFIIDQTNVF-KSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       336 ll~~al~~g~~vIlD~Tn~~-~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      .+..++..|.+||+|.+++. +..|+.+.+.+.+ +.+.+|++.++ +++.+|+.+|.
T Consensus        78 ~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~~~~e~l~~R~~~r~  134 (178)
T 1qhx_A           78 GVVAMARAGARIIIDDVFLGGAAAQERWRSFVGD-LDVLWVGVRCDGAVAEGRETARG  134 (178)
T ss_dssp             HHHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTT-CCEEEEEEECCHHHHHHHHHHTS
T ss_pred             HHHHHHhcCCeEEEEeccccChHHHHHHHHHhcC-CcEEEEEEECCHHHHHHHHHhhC
Confidence            33444578899999998764 3445555555543 36677888886 89999999885

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.14  E-value=9.7e-10  Score=97.71  Aligned_cols=120  Identities=19%  Similarity=0.146  Sum_probs=76.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHH-----------HH-HHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERF-----------QC-LMGRANAIF  333 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~-----------~~-~~~~a~~~~  333 (403)
                      +.+|+++|+|||||||+|+.|++.+.   +.+++.|.+.......+.   ..+....           +. ........+
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~   76 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYG---YTHLSAGELLRDERKNPD---SQYGELIEKYIKEGKIVPVEITISLLKREM   76 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHCTT---STTHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC---CeEEeHHHHHHHHHhccC---ChHHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence            57899999999999999999998876   678888876543321111   0011100           00 111111112


Q ss_pred             HHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          334 DVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       334 ~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      ...+ .++..+..+|+|.+..+...++.+.+.+.... .-.+|++++| +++++|..+|..
T Consensus        77 ~~~~-~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~  136 (196)
T 1tev_A           77 DQTM-AANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK  136 (196)
T ss_dssp             HHHH-HHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             Hhhh-ccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence            2222 23456889999999888877766665555432 3356788887 899999998864

>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}

Probab=99.10  E-value=1.1e-09  Score=98.88  Aligned_cols=145  Identities=8%  Similarity=-0.024  Sum_probs=99.6

Q ss_pred             cEEeCcCCCCCCeEEcCCCceEEecC--------CCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCc
Q 015668           43 RVVLNPADCDLDFDIEDNGLKSSGLH--------QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHV  114 (403)
Q Consensus        43 ~v~l~~~d~~~~l~is~d~l~~~~~~--------~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~  114 (403)
                      .++||+.....+|.||+|+.+++...        ++.|. .|..|.++-++.+|++||||.+.+             ...
T Consensus        14 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~p~RF~-~~~~VLg~~~fssGrHYWEVev~~-------------~~~   79 (191)
T 2wl1_A           14 NVILDAETAYPNLIFSDDLKSVRLGNKWERLPDGPQRFD-SCIIVLGSPSFLSGRRYWEVEVGD-------------KTA   79 (191)
T ss_dssp             CCEECTTTSCTTEEECTTSCEEEECCTTCCCCCCTTSCS-SSCCEEEECCBCSSEEEEEEECTT-------------CSC
T ss_pred             eeEECCccCCCceEECCCCcEEEECCcCCCCCCCccccc-ccccccCcccccCCCEEEEEEeCC-------------CCE
Confidence            68999999999999999998875432        23333 477899999999999999999863             356


Q ss_pred             EEEEEecCCCC---CCCCCCCCcceeEec-CCcee---eCCCcccCCCCCCCCCEEEEEEecCCCCCceEEEEeCccccc
Q 015668          115 CRVGTSRGDDP---VGKLGETEQSFGFGG-TGKFS---HGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLG  187 (403)
Q Consensus       115 ~rVG~s~~~~~---~~~lG~d~~Sygy~~-~G~~~---~~~~~~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg  187 (403)
                      +.||++.....   ...+|.+..+|...- ++..+   |+....-.  .-.....||++||++.   +.|+|+- -...-
T Consensus        80 w~vGV~~~s~~Rkg~~~~~~~~~~W~l~~~~~~~y~~~~~~~~~l~--~~~~~~rVGVfLDye~---G~lSFY~-v~~~~  153 (191)
T 2wl1_A           80 WILGACKTSISRKGNMTLSPENGYWVVIMMKENEYQASSVPPTRLL--IKEPPKRVGIFVDYRV---GSISFYN-VTARS  153 (191)
T ss_dssp             EEEEEEETTCCSSSCCCCCGGGTEEEEEEEETTEEEECCSSCEECC--CSSCCSEEEEEEETTT---TEEEEEE-TTTTE
T ss_pred             EEEEEeeCCcCCCCccccCCCCCEEEEEEeCCCEEEEEcCCCccCc--cccCCcEEEEEEEcCC---CEEEEEE-CCCCc
Confidence            89999986542   235777888898752 24332   22211111  1234679999999998   8999984 23222


Q ss_pred             ccccccC-CCCCCccccchhhcccCCCceEeEEEEe
Q 015668          188 TAKQFDA-GSNGLGVVDSAVKERQCESAVFPHILLK  222 (403)
Q Consensus       188 ~af~~~~-~~~~l~~~~~~~~g~~~~~~~fP~v~l~  222 (403)
                      .-|++.. .               ..++|||++++.
T Consensus       154 ~i~tF~~~~---------------Fs~pl~P~F~~~  174 (191)
T 2wl1_A          154 HIYTFASCS---------------FSGPLQPIFSPG  174 (191)
T ss_dssp             EEEEECCCC---------------CCSCEEEEEECC
T ss_pred             ceEEeCCCC---------------CCCCEEeEEEcc
Confidence            2333322 1               257999998764

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.08  E-value=6.5e-10  Score=96.70  Aligned_cols=118  Identities=13%  Similarity=0.202  Sum_probs=72.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHHHH-HHHHHHHHHHHh--c
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGRA-NAIFDVLLSRAS--R  342 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~~a-~~~~~~ll~~al--~  342 (403)
                      .+|+++|+|||||||+|+.| +.+.   +.+++.|++ ++.+...+. .........+...+.. ...+..++..++  .
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g---~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   76 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERG---AKVIVMSDVVRKRYSIEAK-PGERLMDFAKRLREIYGDGVVARLCVEELGTS   76 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTT---CEEEEHHHHHHHHHHHHC----CCHHHHHHHHHHHHCTTHHHHHHHHHHCSC
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCC---CcEEEHhHHHHHHHHhcCC-ChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Confidence            47899999999999999999 7765   667776654 444332221 0001011111111110 112333444445  6


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668          343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      .+..||+|.. .....+.. ++.+.. .+..+|++++| +++++|...|..
T Consensus        77 ~~~~vi~dg~-~~~~~~~~-l~~~~~-~~~~~i~l~~~~~~~~~R~~~R~~  124 (179)
T 3lw7_A           77 NHDLVVFDGV-RSLAEVEE-FKRLLG-DSVYIVAVHSPPKIRYKRMIERLR  124 (179)
T ss_dssp             CCSCEEEECC-CCHHHHHH-HHHHHC-SCEEEEEEECCHHHHHHHHHTCC-
T ss_pred             CCCeEEEeCC-CCHHHHHH-HHHHhC-CCcEEEEEECCHHHHHHHHHhccC
Confidence            7889999997 77776654 333332 36778899997 899999999865

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.08  E-value=5.2e-10  Score=98.89  Aligned_cols=116  Identities=9%  Similarity=-0.015  Sum_probs=68.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH----HHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN----LILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS  341 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D----~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al  341 (403)
                      +.+|+++|+|||||||+|+.|++.+..  .++++.|    .+++.+. .|.. ...+...+..   ...+.+..++   .
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l~~--~~i~d~~~~g~~i~~~~~-~g~~-~~~~~~~~~~---~~~~~i~~~l---~   74 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERLPG--SFVFEPEEMGQALRKLTP-GFSG-DPQEHPMWIP---LMLDALQYAS---R   74 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHSTT--CEECCTHHHHHHHHHTST-TCCS-CGGGSTTHHH---HHHHHHHHHH---H
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCC--CEEEchhhhHHHHHHhCc-cccc-hhhhhHHHHH---HHHHHHHHHH---H
Confidence            578999999999999999999988763  2223433    3343322 2211 0001112211   1111122222   2


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      ..|..||+|.++..+..+..+++.+...+ .+.+|++++| +++++|+.+|.
T Consensus        75 ~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~  126 (183)
T 2vli_A           75 EAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDG  126 (183)
T ss_dssp             HCSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC-
T ss_pred             hCCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhcc
Confidence            24889999999998877777777776554 5566888887 89999999885

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.07  E-value=1.9e-09  Score=95.70  Aligned_cols=121  Identities=23%  Similarity=0.289  Sum_probs=74.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLSRA  340 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~~a  340 (403)
                      .+.+|+++|+|||||||+|+.|++.++   +.+++.|.+..+....|.    ............-    ......++..+
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~---~~~i~~d~~~~~~~~~~~----~~~~~i~~~~~~g~~~~~~~~~~~l~~~   77 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFG---WVHLSAGDLLRQEQQSGS----KDGEMIATMIKNGEIVPSIVTVKLLKNA   77 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTTC----TTHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhC---CeEeeHHHHHHHHHhcCC----HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence            357999999999999999999998876   688888776443321221    0111111111000    00111122222


Q ss_pred             h--cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          341 S--RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       341 l--~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      +  ..+..+|+|........++.+.+.+.... .-.+|++++| +++++|+.+|..
T Consensus        78 i~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~  133 (194)
T 1qf9_A           78 IDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE  133 (194)
T ss_dssp             HHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT
T ss_pred             HHhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccc
Confidence            1  26789999998877776665555444322 3347788887 899999998863

>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*

Probab=99.07  E-value=1.8e-09  Score=97.33  Aligned_cols=145  Identities=10%  Similarity=0.031  Sum_probs=100.4

Q ss_pred             CcEEeCcCCCCCCeEEcCCCceEEecC--------CCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCC
Q 015668           42 QRVVLNPADCDLDFDIEDNGLKSSGLH--------QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQH  113 (403)
Q Consensus        42 ~~v~l~~~d~~~~l~is~d~l~~~~~~--------~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~  113 (403)
                      ..++||+....++|.||+|+.+++...        ++.|. .|..|.++-++.+|++||||.+.+             ..
T Consensus         9 ~~vtLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~-~~~~VLg~~~fsSGrHYWEVev~~-------------~~   74 (188)
T 2vok_A            9 VHITLDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFS-NYPMVLGAQRFSSGKMYWEVDVTQ-------------KE   74 (188)
T ss_dssp             CCCCBCGGGSCTTEEECTTSCEEEECSSCCCCCCCTTSCC-SSSEEEBSCCBSSSEEEEEEECTT-------------CS
T ss_pred             cceEECCccCCCCeEECCCCCEEEECCccCCCCCCcccee-eeccccccCcccCCCeEEEEEecC-------------Cc
Confidence            468999999999999999998875432        22333 477899999999999999999863             35


Q ss_pred             cEEEEEecCCCC---CCCCCCCCcceeEec-CCce--eeCCCcccCCCCCCCCCEEEEEEecCCCCCceEEEEeCcc--c
Q 015668          114 VCRVGTSRGDDP---VGKLGETEQSFGFGG-TGKF--SHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGK--W  185 (403)
Q Consensus       114 ~~rVG~s~~~~~---~~~lG~d~~Sygy~~-~G~~--~~~~~~~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~--~  185 (403)
                      .+.||++.....   ...+|.+..+|...- ++..  +|+....-.-  -.....||++||++.   +.|+|+-...  .
T Consensus        75 ~w~vGV~~~si~Rkg~~~~~~~~~~W~l~~~~~~y~~~~~~~~~l~~--~~~~~rVGVfLDye~---G~lSFY~v~~~~~  149 (188)
T 2vok_A           75 AWDLGVCRDSVQRKGQFSLSPENGFWTIWLWQDSYEAGTSPQTTLHI--QVPPCQIGIFVDYEA---GVVSFYNITDHGS  149 (188)
T ss_dssp             CEEEEEEETTCCCSSCCCCSTTTTEEEEEEETTEEEECSSSCEEECC--SSCCSEEEEEEETTT---TEEEEEETTTTTE
T ss_pred             eEEEEEeeCCcCCCCccccCCCCCEEEEEEECCEEEEEeCCccCEec--CCCCCEEEEEEEcCC---CEEEEEECCCCCe
Confidence            689999986542   346788999999853 3431  2332211111  124579999999998   8999985322  2


Q ss_pred             ccccccccC-CCCCCccccchhhcccCCCceEeEEEEe
Q 015668          186 LGTAKQFDA-GSNGLGVVDSAVKERQCESAVFPHILLK  222 (403)
Q Consensus       186 lg~af~~~~-~~~~l~~~~~~~~g~~~~~~~fP~v~l~  222 (403)
                      +-..|.  . .               ..++|||++++.
T Consensus       150 ~I~tF~--~~~---------------Fs~pL~P~F~~~  170 (188)
T 2vok_A          150 LIYTFS--ECV---------------FAGPLRPFFNVG  170 (188)
T ss_dssp             EEEEEC--SCC---------------CCSCEEEEEECC
T ss_pred             eeEEec--CCC---------------CCCCEEeEEEec
Confidence            222332  2 1               256999998764

>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22

Probab=99.06  E-value=3.1e-09  Score=96.77  Aligned_cols=146  Identities=12%  Similarity=0.014  Sum_probs=100.2

Q ss_pred             cEEeCcCCCCCCeEEcCCCceEEecC--------CCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCc
Q 015668           43 RVVLNPADCDLDFDIEDNGLKSSGLH--------QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHV  114 (403)
Q Consensus        43 ~v~l~~~d~~~~l~is~d~l~~~~~~--------~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~  114 (403)
                      .++||+.....+|.||+|+.+++...        ++.|. .|..|.++-++.+|++||||.+.+             ...
T Consensus        11 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~-~~~~VLg~~~fsSGrHYWEVev~~-------------~~~   76 (201)
T 2fbe_A           11 DMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFD-TALCVLGTPRFTSGRHYWEVDVGT-------------SQV   76 (201)
T ss_dssp             CCCEETTTCCTTEEECTTSSEEEECSSCCCCCCCTTSCS-SSCEEEESCCBSSSEEEEEEECTT-------------CSE
T ss_pred             eEEECcccCCCceEECCCCcEEEECCccCCCCCCcccee-eccceecCccccCCceEEEEEeCC-------------CCE
Confidence            58999999999999999998875432        22333 477899999999999999999863             356


Q ss_pred             EEEEEecCCCC---CCCCCCCCcceeEe-cCCcee--eCCCcccCCCCCCCCCEEEEEEecCCCCCceEEEEeCcccccc
Q 015668          115 CRVGTSRGDDP---VGKLGETEQSFGFG-GTGKFS--HGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGT  188 (403)
Q Consensus       115 ~rVG~s~~~~~---~~~lG~d~~Sygy~-~~G~~~--~~~~~~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg~  188 (403)
                      +.||++.....   ...++.+..+|... .+|..+  +.+.....- .-.....||++||++.   ++|+|+-. ...-.
T Consensus        77 w~vGV~~~si~Rkg~~~~~~~~g~W~l~~~~~~~y~~~~~~~~~l~-~~~~~~rVGVfLDye~---G~lSFY~v-~~~~~  151 (201)
T 2fbe_A           77 WDVGVCKESVNRQGKIELSSEHGFLTVGCREGKVFAASTVPMTPLW-VSPQLHRVGIFLDVGM---RSIAFYNV-SDGCH  151 (201)
T ss_dssp             EEEEEEETTSCCSSCCCCCTTTTEEEEEEETTTEEEECSSSCEEEC-CCTTCCEEEEEEETTT---TEEEEEET-TTTEE
T ss_pred             EEEEEeeCccCCCCcccccCCCCEEEEEEeCCCEEEEEcCCcccCc-cCCCCCEEEEEEEcCC---CEEEEEeC-CCCce
Confidence            99999986542   23467788899885 334332  222211110 1234579999999998   89999852 22222


Q ss_pred             cccccC-CCCCCccccchhhcccCCCceEeEEEEe
Q 015668          189 AKQFDA-GSNGLGVVDSAVKERQCESAVFPHILLK  222 (403)
Q Consensus       189 af~~~~-~~~~l~~~~~~~~g~~~~~~~fP~v~l~  222 (403)
                      -|++.. .               ..++|||++++.
T Consensus       152 i~tF~~~~---------------Fs~pL~P~F~~~  171 (201)
T 2fbe_A          152 IYTFIEIP---------------VCEPWRPFFAHK  171 (201)
T ss_dssp             EEEECSCC---------------CSSCEEEEEEEE
T ss_pred             eEEEcCCC---------------CCCCEEeEEEec
Confidence            333322 1               256999999874

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.05  E-value=1.9e-09  Score=94.89  Aligned_cols=112  Identities=14%  Similarity=0.166  Sum_probs=73.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh--h--cCCCcccCCChH-HHHHHHHHHHHHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM--K--VPGLLRKHNYSE-RFQCLMGRANAIFDVLLSR  339 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l--~--~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~  339 (403)
                      ..++|+++|+|||||||+++.++..+.   +++++.|.++...  .  ..|..    +.. .........    ..++..
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g---~~~i~~d~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~----~~~~~~   75 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQLH---AAFLDGDFLHPRRNIEKMASGEP----LNDDDRKPWLQAL----NDAAFA   75 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHT---CEEEEGGGGCCHHHHHHHHTTCC----CCHHHHHHHHHHH----HHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhhC---cEEEeCccccchHHHHHhhcCcC----CCccccccHHHHH----HHHHHH
Confidence            368999999999999999999998764   6788888763210  0  12321    111 111111111    223333


Q ss_pred             HhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668          340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      ++..+..+|+|.+++.+..|.    .+++.. .+.+|++++| +++++|+.+|.
T Consensus        76 ~~~~~~~~vi~~~~~~~~~~~----~l~~~~~~~~vv~l~~~~e~~~~R~~~R~  125 (175)
T 1knq_A           76 MQRTNKVSLIVCSALKKHYRD----LLREGNPNLSFIYLKGDFDVIESRLKARK  125 (175)
T ss_dssp             HHHHCSEEEEECCCCSHHHHH----HHHTTCTTEEEEEEECCHHHHHHHHHTST
T ss_pred             HHhcCCcEEEEeCchHHHHHH----HHHhcCCCEEEEEEECCHHHHHHHHHhcc
Confidence            445678999999988776554    344443 6678899997 89999999885

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.05  E-value=2.7e-09  Score=95.01  Aligned_cols=116  Identities=19%  Similarity=0.160  Sum_probs=77.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRAS  341 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~al  341 (403)
                      ...+|+++|+|||||||+++.++..+..  ..+.+++.|.++..+.  +..   .+.. ........+    ..+...++
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~--~~~---~~~~~~r~~~~~~~----~~~~~~~~   82 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVS--EGA---GFTREERLRHLKRI----AWIARLLA   82 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTT--TTC---CCCHHHHHHHHHHH----HHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHh--hcc---CCChhhHHHHHHHH----HHHHHHHH
Confidence            4689999999999999999999887642  2256788888876543  211   1221 111112111    11222335


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHH
Q 015668          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVK  389 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~  389 (403)
                      ..|..||+|.++.++..|..+.+.+...+ +..+|++++| +++.+|+.+
T Consensus        83 ~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~  132 (186)
T 2yvu_A           83 RNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPK  132 (186)
T ss_dssp             TTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred             hCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhh
Confidence            78889999999988888876555555444 6788899997 889888644

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.03  E-value=7.3e-10  Score=100.05  Aligned_cols=110  Identities=15%  Similarity=0.212  Sum_probs=73.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH-----HHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-----EQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA  340 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir-----~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~a  340 (403)
                      +.+|+|+|+|||||||+|+.|++.+.   +.+++.|.++     ..+. .|.    .+...  .....    + ..+...
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg---~~~i~~d~~~~~~~~~~~~-~g~----~~~~~--~~~~~----~-~~l~~~   82 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACG---YPFIEGDALHPPENIRKMS-EGI----PLTDD--DRWPW----L-AAIGER   82 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHT---CCEEEGGGGCCHHHHHHHH-HTC----CCCHH--HHHHH----H-HHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC---CEEEeCCcCcchhhHHHHh-cCC----CCCch--hhHHH----H-HHHHHH
Confidence            57899999999999999999998875   6788888763     2111 121    11111  01111    1 122233


Q ss_pred             hcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668          341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      +..+..+|+|.++..+..|.. ++.+.. .+..+|++++| +++++|+.+|..
T Consensus        83 ~~~~~~vivd~~~~~~~~~~~-l~~~~~-~~~~vi~l~~~~e~~~~Rl~~R~~  133 (202)
T 3t61_A           83 LASREPVVVSCSALKRSYRDK-LRESAP-GGLAFVFLHGSESVLAERMHHRTG  133 (202)
T ss_dssp             HTSSSCCEEECCCCSHHHHHH-HHHTST-TCCEEEEEECCHHHHHHHHHHHHS
T ss_pred             HhcCCCEEEECCCCCHHHHHH-HHHhcC-CCeEEEEEeCCHHHHHHHHHHhhc
Confidence            378899999999998877764 322221 14678899997 899999999863

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.00  E-value=3.7e-09  Score=94.23  Aligned_cols=118  Identities=21%  Similarity=0.221  Sum_probs=72.9

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHH--------HHHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLM--------GRANAIFDVL  336 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~--------~~a~~~~~~l  336 (403)
                      .+.+|+++|+|||||||+|+.|++.++   +.+++.|.+.......|..    .........        +.....+...
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~~~~~~~~~~----~~~~i~~~~~~g~~~~~~~~~~~~~~~   80 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYG---YTHLSTGDLLRSEVSSGSA----RGKKLSEIMEKGQLVPLETVLDMLRDA   80 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTTCH----HHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHHHHHHHcCCh----HHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence            357899999999999999999998876   6788888755442111110    001000000        0111223344


Q ss_pred             HHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          337 LSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       337 l~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      +..++..|..+|+|........++.+...+  ...-.+|++++| +++++|..+|.
T Consensus        81 i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~--~~~~~vi~l~~~~e~~~~R~~~R~  134 (196)
T 2c95_A           81 MVAKVNTSKGFLIDGYPREVQQGEEFERRI--GQPTLLLYVDAGPETMTQRLLKRG  134 (196)
T ss_dssp             HHHHTTTCSCEEEESCCCSHHHHHHHHHHT--CCCSEEEEEECCHHHHHHHHHHHH
T ss_pred             HHhccccCCcEEEeCCCCCHHHHHHHHHhc--CCCCEEEEEECCHHHHHHHHHccC
Confidence            445567889999998666655444322222  123467788887 89999998885

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.99  E-value=3.7e-09  Score=108.18  Aligned_cols=127  Identities=18%  Similarity=0.028  Sum_probs=75.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHHHHhhcCCCccc-C-CChHH-HHHHHHHHHHHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRK-H-NYSER-FQCLMGRANAIFDVLLSR  339 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir~~l~~~g~~~~-~-~~~~~-~~~~~~~a~~~~~~ll~~  339 (403)
                      .+.+|+|+|+|||||||++++|++.+.  ......++.|.++.++........ . ..+.. .......+..++..+...
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~  117 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF  117 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999988643  112577888888877531101000 0 01111 111111222222222222


Q ss_pred             Hh-cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh--HHHHHHHHHhc
Q 015668          340 AS-RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP--EDLKIRSVKRF  391 (403)
Q Consensus       340 al-~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p--e~~~~R~~~R~  391 (403)
                      .. ..|..+|+|+||..++.|+.+++.+++.+ .+.++.+.++  +.+.+|...|.
T Consensus       118 l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~  173 (469)
T 1bif_A          118 LSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVK  173 (469)
T ss_dssp             HHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHT
T ss_pred             HHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhh
Confidence            22 57889999999999999999888887655 4444454443  44555544433

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.99  E-value=2.8e-09  Score=96.27  Aligned_cols=112  Identities=16%  Similarity=0.163  Sum_probs=74.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH-----HhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE-----QMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLS  338 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~-----~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~  338 (403)
                      ..++|+++|+|||||||+++.++..+.   ++.++.|.++.     .+. .|..    ++. .......    .+...+.
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g---~~~i~~d~~~~~~~~~~~~-~g~~----~~~~~~~~~~~----~~~~~~~   95 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADETG---LEFAEADAFHSPENIATMQ-RGIP----LTDEDRWPWLR----SLAEWMD   95 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHC---CEEEEGGGGSCHHHHHHHH-TTCC----CCHHHHHHHHH----HHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhC---CeEEcccccccHHHHHHHh-cCCC----CCCcccccHHH----HHHHHHH
Confidence            468999999999999999999998874   67888887531     111 2321    111 1111111    1222333


Q ss_pred             HHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          339 RASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       339 ~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      ..+..+..+|+|.+...+..|+.    +.+.. +..+|++++| +++++|+.+|..
T Consensus        96 ~~~~~g~~viid~~~~~~~~~~~----l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~  147 (200)
T 4eun_A           96 ARADAGVSTIITCSALKRTYRDV----LREGPPSVDFLHLDGPAEVIKGRMSKREG  147 (200)
T ss_dssp             HHHHTTCCEEEEECCCCHHHHHH----HTTSSSCCEEEEEECCHHHHHHHHTTCSC
T ss_pred             HHHhcCCCEEEEchhhhHHHHHH----HHHhCCceEEEEEeCCHHHHHHHHHhccc
Confidence            34567889999999888766653    34332 5678899997 899999998853

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=98.97  E-value=4.7e-09  Score=95.55  Aligned_cols=116  Identities=15%  Similarity=0.166  Sum_probs=71.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHh--
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRAS--  341 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al--  341 (403)
                      .|+|+|+|||||||+|+.|++.++   +.+++.|.+..+....+..    ........+..    .......++...+  
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~r~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~   74 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYG---IPHISTGDMFRAAMKEETP----LGLEAKSYIDKGELVPDEVTIGIVKERLGK   74 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS---CCEEEHHHHHHHHHHTTCH----HHHHHHHHHTTTCCCCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHHHhcCCH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Confidence            478899999999999999999886   6788887654432212210    00111111000    0011112222222  


Q ss_pred             -cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHh
Q 015668          342 -RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKR  390 (403)
Q Consensus       342 -~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~p-e~~~~R~~~R  390 (403)
                       ..+..+|+|........+..+.+.+...+ .. .++++++| +++++|+.+|
T Consensus        75 ~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  127 (216)
T 3dl0_A           75 DDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR  127 (216)
T ss_dssp             GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred             ccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence             33789999997777776666555555444 33 57788887 8999999999

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=98.97  E-value=4.8e-09  Score=93.73  Aligned_cols=118  Identities=19%  Similarity=0.246  Sum_probs=73.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHH--------HHHHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLM--------GRANAIFDVLL  337 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~--------~~a~~~~~~ll  337 (403)
                      +.+|+++|+|||||||+|+.|++.+.   +.+++.|.+.......+..    .........        +.....+...+
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~~~~~~~~~~----~~~~i~~~~~~g~~~~~~~~~~~~~~~i   84 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYG---FTHLSTGELLREELASESE----RSKLIRDIMERGDLVPSGIVLELLKEAM   84 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHHHHTCH----HHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHHHHHHHhCCH----HHHHHHHHHHcCCcCCHHHHHHHHHHHH
Confidence            56899999999999999999999876   6788888764332111110    000000000        01112223334


Q ss_pred             HHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668          338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       338 ~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      ...+..+..+|+|....+...+..+.+.+ . ..-.+|++++| +++++|..+|..
T Consensus        85 ~~~~~~~~~vi~dg~~~~~~~~~~l~~~~-~-~~~~~i~l~~~~~~~~~R~~~R~~  138 (199)
T 2bwj_A           85 VASLGDTRGFLIDGYPREVKQGEEFGRRI-G-DPQLVICMDCSADTMTNRLLQMSR  138 (199)
T ss_dssp             HHHTTSCSCEEEETCCSSHHHHHHHHHHT-C-CCSEEEEEECCHHHHHHHHHHTCC
T ss_pred             hcccccCccEEEeCCCCCHHHHHHHHHhc-C-CCCEEEEEECCHHHHHHHHHcCCC
Confidence            44456789999999888776655433222 1 22357788887 899999998864

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.97  E-value=2.6e-09  Score=94.29  Aligned_cols=113  Identities=21%  Similarity=0.278  Sum_probs=79.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP  344 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g  344 (403)
                      ..+++.|+|++||||||+++.+...     ..+++.|.++..+.  .....   ........+..    .......+..+
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~~~-----~~~~~~d~~~g~~~--~~~~~---~~~~~~~~~~~----~~~~~~~~~~g   73 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHFKP-----TEVISSDFCRGLMS--DDEND---QTVTGAAFDVL----HYIVSKRLQLG   73 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHSCG-----GGEEEHHHHHHHHC--SSTTC---GGGHHHHHHHH----HHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHccC-----CeEEccHHHHHHhc--Ccccc---hhhHHHHHHHH----HHHHHHHHhCC
Confidence            4689999999999999999997643     34578888876543  21100   01111112221    12233345779


Q ss_pred             CeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668          345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      ..+++|+++.....|++++..++.+. +..+++++.| ..+-.|+++|.
T Consensus        74 ~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~  122 (171)
T 4gp7_A           74 KLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT  122 (171)
T ss_dssp             CCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence            99999999999998888888888876 7888999999 77888887665

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=98.96  E-value=5.4e-09  Score=95.07  Aligned_cols=116  Identities=17%  Similarity=0.225  Sum_probs=71.8

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHHHHHh--
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLSRAS--  341 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~~al--  341 (403)
                      .|+++|+|||||||+|+.|++.++   +.+++.|.+..+....+..    ........+..-    ......++...+  
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~r~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~   74 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYE---IPHISTGDMFRAAIKNGTE----LGLKAKSFMDQGNLVPDEVTIGIVHERLSK   74 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHTTCH----HHHHHHHHHHHTCCCCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CcEeeHHHHHHHHHhcCCH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Confidence            478899999999999999998876   6778887654443212210    011111111110    011222333333  


Q ss_pred             -cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHh
Q 015668          342 -RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKR  390 (403)
Q Consensus       342 -~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~p-e~~~~R~~~R  390 (403)
                       ..+..+|+|........+..+.+.+...+ .. .++++++| +++++|+.+|
T Consensus        75 ~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  127 (216)
T 3fb4_A           75 DDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR  127 (216)
T ss_dssp             GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred             ccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence             23789999997777776665555555444 33 67788887 8999999998

>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}

Probab=98.95  E-value=8.9e-09  Score=92.61  Aligned_cols=140  Identities=17%  Similarity=0.195  Sum_probs=97.5

Q ss_pred             cEEeCcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecC
Q 015668           43 RVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRG  122 (403)
Q Consensus        43 ~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~~  122 (403)
                      .|+|||.... +|.||+|+.+++..       .+..|.+.-++.+|++||||.+.+             ...+.||++..
T Consensus        13 ~vTLDp~TA~-~l~lSed~r~Vr~~-------~~~~VLG~~~ftsGrHYWEVeV~~-------------~~~W~vGV~~~   71 (186)
T 3uv9_A           13 DVTLATNNIS-HAVIAEDKRQVSSR-------AGTGVLGSQSITSGKHYWEVDVSK-------------KSAWILGVCAG   71 (186)
T ss_dssp             CCCCCCCSSC-CCEECTTSSCEECC-------CSSCEECSSCBCSSEEEEEEECTT-------------CSCEEEEEESC
T ss_pred             EeEeCCCCcC-CceECCCCCEEeec-------CCCcCcCCCCCCCCCEEEEEEEcC-------------CCcEEEEEEEE
Confidence            5899999987 59999999999753       345799999999999999999863             36789999864


Q ss_pred             CCC--------CCCCCCCCcceeEe-cCCce---eeCCCcc-cCCC------CCCCCCEEEEEEecCCCCCceEEEEe--
Q 015668          123 DDP--------VGKLGETEQSFGFG-GTGKF---SHGGNFL-NFGE------KFGVGDTIICAIDLESKPLATIGFAK--  181 (403)
Q Consensus       123 ~~~--------~~~lG~d~~Sygy~-~~G~~---~~~~~~~-~yG~------~f~~gDVIGc~ldl~~~p~~~i~ftk--  181 (403)
                      ...        ...+|.+..+|+.. .+|..   +|++... ..+.      .-.....||++||++.   +.|+|+-  
T Consensus        72 ~~~r~~~~~~~~~~~~~~~g~W~l~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~p~rVGVfLDye~---G~lSFYnv~  148 (186)
T 3uv9_A           72 FQSDAMYNIEQNENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEA---CTVSFFNIT  148 (186)
T ss_dssp             STTTTTTTHHHHTCCCGGGTEEEEEEETTTEEEEEECCCTTSTTSCEEEECCCSSCCSEEEEEEETTT---TEEEEEETT
T ss_pred             EecccccccCCCcccCCCCCEEEEEECCCCEEEEEeCCCccccCCCccCcccccccCCEEEEEeecCC---CEEEEEeCC
Confidence            321        23578888899985 45543   3444332 2222      1234678999999998   8999982  


Q ss_pred             CcccccccccccCCCCCCccccchhhcccCCCceEeEEEEe
Q 015668          182 NGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK  222 (403)
Q Consensus       182 NG~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~  222 (403)
                      |...+...|. ...               ..++|||..++.
T Consensus       149 d~~~lI~tF~-~~~---------------Fs~pL~P~F~~~  173 (186)
T 3uv9_A          149 NHGFLIYKFS-QCS---------------FSKPVFPYLNPR  173 (186)
T ss_dssp             TTTEEEEEEC-SCC---------------CSSCBEEEEECT
T ss_pred             CCceEEEEeC-CcC---------------CCCCEEeEEECC
Confidence            2222333332 111               246899998875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=98.95  E-value=5.2e-09  Score=92.70  Aligned_cols=116  Identities=23%  Similarity=0.311  Sum_probs=70.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH-HhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE-QMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRA  340 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~-~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~a  340 (403)
                      ..+|+++|+|||||||+++.|++.+.   +.++++|.+.. .+. .+.    ............    .......++..+
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l~---~~~i~~d~~~~~~~~-~~~----~~~~~i~~~~~~g~~~~~~~~~~~~~~~   75 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQELG---FKKLSTGDILRDHVA-RGT----PLGERVRPIMERGDLVPDDLILELIREE   75 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHHT---CEEECHHHHHHHHHH-TTC----HHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC---CeEecHHHHHHHHHH-cCC----hHHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence            57899999999999999999998875   67898876543 322 111    001111111100    001122233344


Q ss_pred             hcCCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668          341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      +..+  +|+|........+..+.+.+...+  .-.++++++| +++++|..+|.
T Consensus        76 l~~~--~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~  127 (186)
T 3cm0_A           76 LAER--VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA  127 (186)
T ss_dssp             CCSE--EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred             hcCC--EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence            4544  999987776665543333344433  2356888887 89999999885

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=98.93  E-value=1.3e-08  Score=91.58  Aligned_cols=121  Identities=17%  Similarity=0.160  Sum_probs=72.1

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH-hhcCCCcccCCChHHHHHHHHHH----HHHHHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLS  338 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~-l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~  338 (403)
                      ..+.+|+|+|+|||||||+|+.|++.+.   +.+++.|.+..+ +. .+..    ...........-    ......++.
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l~---~~~i~~d~~~r~~~~-~~~~----~g~~i~~~~~~g~~~~~~~~~~~~~   89 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG---IPQISTGELFRRNIE-EGTK----LGVEAKRYLDAGDLVPSDLTNELVD   89 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHHH-TTCH----HHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC---CcEEehhHHHHHHHH-cCCh----HHHHHHHHHHcCCcccHHHHHHHHH
Confidence            3467899999999999999999999875   567888766433 32 1110    001111111000    000111121


Q ss_pred             HH---hcCCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhcc
Q 015668          339 RA---SRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       339 ~a---l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      ..   ...+..+|+|.+......+..+.+.+...+  .-.+|+|++| +++++|+.+|.+
T Consensus        90 ~~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r  149 (201)
T 2cdn_A           90 DRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGR  149 (201)
T ss_dssp             HHTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCC
T ss_pred             HHHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCC
Confidence            11   234678999987777766654434454433  3367888887 899999998853

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=98.92  E-value=2.4e-08  Score=89.87  Aligned_cols=119  Identities=21%  Similarity=0.271  Sum_probs=71.5

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh-hcCCCcccCCChHHHHHHH--------HHHHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM-KVPGLLRKHNYSERFQCLM--------GRANAIFD  334 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l-~~~g~~~~~~~~~~~~~~~--------~~a~~~~~  334 (403)
                      ..+.+|+++|+|||||||+++.|++.++   +.+++.|.+..+. ...+.    .+.......+        +.....+.
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g---~~~i~~d~~~~~~~~~~~~----~~~~~i~~~~~~g~~~~~~~~~~~l~   85 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS---FVHLSAGDLLRAEQGRAGS----QYGELIKNCIKEGQIVPQEITLALLR   85 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSS---CEEEEHHHHHHHHHHSTTC----SCHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcC---ceEEeHHHHHHHHHhccCC----HHHHHHHHHHHcCCcCCHHHHHHHHH
Confidence            4578999999999999999999999886   6888888764432 11121    1111111100        01112233


Q ss_pred             HHHHHHhcCC-CeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          335 VLLSRASRTP-RNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       335 ~ll~~al~~g-~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      +.+..++..| ..+|+|......+... .++.... ..-.+|++++| +++++|..+|.
T Consensus        86 ~~i~~~l~~g~~~~i~dg~~~~~~~~~-~~~~~~~-~~~~~i~l~~~~e~~~~Rl~~R~  142 (203)
T 1ukz_A           86 NAISDNVKANKHKFLIDGFPRKMDQAI-SFERDIV-ESKFILFFDCPEDIMLERLLERG  142 (203)
T ss_dssp             HHHHHHHHTTCCEEEEETCCCSHHHHH-HHHHHTC-CCSEEEEEECCHHHHHHHHHHHH
T ss_pred             HHHHhhhccCCCeEEEeCCCCCHHHHH-HHHHhcC-CCCEEEEEECCHHHHHHHHHhcc
Confidence            3343444555 6899998655444333 2322211 13356788887 88999998885

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=98.91  E-value=1.7e-08  Score=94.29  Aligned_cols=121  Identities=21%  Similarity=0.241  Sum_probs=74.8

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLSR  339 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~~  339 (403)
                      ..+.+|+++|+|||||||+|+.|++.++   +.+++.|++..+....+.    .........+..-    ......++..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g---~~~is~~~~~r~~~~~~~----~~g~~i~~~~~~g~~~~~~~~~~~~~~   99 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC---YCHLSTGDLLREAAEKKT----ELGLKIKNIINEGKLVDDQMVLSLVDE   99 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHTTSSS----HHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC---CeEEecHHHHHHHHhccc----hHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            3478999999999999999999998876   788888765444321221    0111111111100    0112223333


Q ss_pred             HhcC---CCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668          340 ASRT---PRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       340 al~~---g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      .+..   +..+|+|.........+.+.+.+...+  .-.+++|++| +++++|+.+|.
T Consensus       100 ~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~  157 (243)
T 3tlx_A          100 KLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL  157 (243)
T ss_dssp             HTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             HHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence            3333   788999996555555554444455443  3467788887 89999999986

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.90  E-value=7.3e-09  Score=94.30  Aligned_cols=114  Identities=18%  Similarity=0.122  Sum_probs=73.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-Ccc--EEEeccHHHHHHhhcCCCcccCCCh-HHHHHHHHHHHHHHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKR--YILLGTNLILEQMKVPGLLRKHNYS-ERFQCLMGRANAIFDVLLSRA  340 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~--~v~ls~D~ir~~l~~~g~~~~~~~~-~~~~~~~~~a~~~~~~ll~~a  340 (403)
                      ...+|+++|+|||||||+++.+++.++ ..+  +++++.|.++..+.  ..   ..+. .......+.+    ..++..+
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~--~~---~~~~~~~r~~~~~~~----~~~~~~~   94 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLN--KD---LGFSEADRNENIRRI----AEVAKLF   94 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTT--TT---CCSSHHHHHHHHHHH----HHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhc--cc---cCCCHHHHHHHHHHH----HHHHHHH
Confidence            468999999999999999999988764 222  78898888876542  11   1122 1112222221    1223345


Q ss_pred             hcCCCeEEEeCCCCCHHHHHHHHHHHh------cCC-cEEEEEECCh-HHHHHHH
Q 015668          341 SRTPRNFIIDQTNVFKSARKRKLRLFV------NFR-KIAVVVFPKP-EDLKIRS  387 (403)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~------~~~-~~~vv~l~~p-e~~~~R~  387 (403)
                      +..|..||+|.++.++..|..+.+.+.      ... +..+|+|++| +++.+|+
T Consensus        95 l~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~  149 (211)
T 1m7g_A           95 ADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD  149 (211)
T ss_dssp             HHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred             HHCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence            678999999977666666664333333      112 4778999997 8898883

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=98.90  E-value=1.2e-08  Score=93.81  Aligned_cols=117  Identities=14%  Similarity=0.111  Sum_probs=68.1

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHhcC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASRT  343 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al~~  343 (403)
                      +|+++|+|||||||+|+.|++.+.   +.++++|++..+....+.    .........+..    -.+....++..++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg---~~~i~~dd~~r~~~~~~~----~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~   74 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS---LAHIESGGIFREHIGGGT----ELGKKAKEFIDRGDLVPDDITIPMVLETLES   74 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT---CEEEEHHHHHHHHTTTTC----HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CeEEchHHHHHHHHHcCC----HHHHHHHHHHHcCCcCcHHHHHHHHHHHHhc
Confidence            689999999999999999999875   678888776443211111    001111111100    001122233333344


Q ss_pred             --CCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668          344 --PRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       344 --g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                        +..||+|.........+.+.+.+...+  .-.++++++| +++++|...|.
T Consensus        75 ~~g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~  127 (223)
T 2xb4_A           75 KGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR  127 (223)
T ss_dssp             HCTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred             ccCCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence              889999975444443333222223332  3467888887 89999999885

>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}

Probab=98.89  E-value=3.6e-08  Score=89.13  Aligned_cols=145  Identities=10%  Similarity=0.110  Sum_probs=95.7

Q ss_pred             cEEeCcCCCCCCeEEcCCCceEEecC---------CCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCC
Q 015668           43 RVVLNPADCDLDFDIEDNGLKSSGLH---------QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQH  113 (403)
Q Consensus        43 ~v~l~~~d~~~~l~is~d~l~~~~~~---------~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~  113 (403)
                      .++||+.....+|.||+|+.+++...         ++.|. .|..|.+.-++.+|++||||.+..             ..
T Consensus        13 ~vtLDp~TA~~~L~lSed~~~v~~~~~~~q~~p~~p~RF~-~~~~VLg~~~fssGrhYWEVev~~-------------~~   78 (193)
T 3kb5_A           13 ELTFDPSSAHPSLVVSSSGRRVECSEQKAPPAGEDPRQFD-KAVAVVAHQQLSEGEHYWEVDVGD-------------KP   78 (193)
T ss_dssp             CCCBCTTTSCTTEEEETTTTEEEECCSCCCCCCSCTTSCS-SSCEEEBSCCBCSSEEEEEEECTT-------------CS
T ss_pred             cEEECCCCCCCCEEECCCCCEEEECCcCCCCCCCCccccc-cccEEccCCcccCCCEEEEEEeCc-------------Cc
Confidence            58999999999999999998875432         12222 367899999999999999999863             35


Q ss_pred             cEEEEEecCCCC---CCCCCCCCcceeEe-cCCce--e-eCCCcc-cCCCCCCCCCEEEEEEecCCCCCceEEEEe--Cc
Q 015668          114 VCRVGTSRGDDP---VGKLGETEQSFGFG-GTGKF--S-HGGNFL-NFGEKFGVGDTIICAIDLESKPLATIGFAK--NG  183 (403)
Q Consensus       114 ~~rVG~s~~~~~---~~~lG~d~~Sygy~-~~G~~--~-~~~~~~-~yG~~f~~gDVIGc~ldl~~~p~~~i~ftk--NG  183 (403)
                      .+.||++.....   ...++.+..+|... .+|..  . ++.... ..-.+-..-..||++||.+.   +.|+|+-  ++
T Consensus        79 ~W~lGV~~~s~~Rkg~~~~~~~~~~W~l~~~~~~~y~~~~~~~~~~~l~~~~~~~~rVGVfLDye~---G~lSFY~v~~~  155 (193)
T 3kb5_A           79 RWALGVIAAEAPRRGRLHAVPSQGLWLLGLREGKILEAHVEAKEPRALRSPERRPTRIGLYLSFGD---GVLSFYDASDA  155 (193)
T ss_dssp             SEEEEEEETTSCCSSSCCCSGGGTEEEEEEETTTEEEECCSSSSCEECCCCSSCCSEEEEEEETTT---TEEEEEECCST
T ss_pred             eEEEEEeeCCcCcCCCcCCCCCCCEEEEEEeCCCEEEEEeCCCccEEEeecCCCCCEEEEEEEcCC---CEEEEEeCCCC
Confidence            689999986532   22345566789874 34432  2 222211 01111123458999999998   8998874  21


Q ss_pred             --ccccccccccCCCCCCccccchhhcccCCCceEeEEEE
Q 015668          184 --KWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILL  221 (403)
Q Consensus       184 --~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l  221 (403)
                        ..+--.|.  ..               ..+++||..++
T Consensus       156 ~~~s~I~tF~--~~---------------Ft~pl~P~F~~  178 (193)
T 3kb5_A          156 DALVPLFAFH--ER---------------LPRPVYPFFDV  178 (193)
T ss_dssp             TCCEEEEEEC--SC---------------CCSCEEEEEEC
T ss_pred             CCceEEEEeC--CC---------------CCCCeECEEEc
Confidence              23333343  22               25689999865

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=98.86  E-value=1.7e-08  Score=92.33  Aligned_cols=119  Identities=17%  Similarity=0.158  Sum_probs=68.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHH--------HHHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMG--------RANAIFDVLL  337 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~--------~a~~~~~~ll  337 (403)
                      +.+|+++|+|||||||+|+.|++.+.   +.++++|++..+....+.    ........++.        .....+...+
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~~~~~~~~~----~~g~~i~~~~~~g~~~~~~~~~~~l~~~l   76 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERFH---AAHLATGDMLRSQIAKGT----QLGLEAKKIMDQGGLVSDDIMVNMIKDEL   76 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTTC----HHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC---ceEEehhHHHHHHHHcCC----hHHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence            56899999999999999999999886   678888766443211111    00000011110        0111112222


Q ss_pred             HHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHhc
Q 015668          338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       338 ~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~p-e~~~~R~~~R~  391 (403)
                      ......+..+|+|....+...++.+-+.+...+ .. .++++++| +++++|...|.
T Consensus        77 ~~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~  133 (220)
T 1aky_A           77 TNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRL  133 (220)
T ss_dssp             HHCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             HhccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCC
Confidence            111124668999975444444443323333333 33 67899987 89999998885

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.86  E-value=1.3e-08  Score=91.77  Aligned_cols=114  Identities=15%  Similarity=0.134  Sum_probs=74.7

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEE--EeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYI--LLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRA  340 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v--~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~a  340 (403)
                      ...++|+++|++||||||+++.++..+...+++  .++.|.++..+. .+    ..+.. .........    ..+....
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~-~~----~~~~~~~~~~~~~~~----~~~~~~~   93 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLN-RD----LSFKAEDRAENIRRV----GEVAKLF   93 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTT-TT----CCSSHHHHHHHHHHH----HHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhh-cc----cCcChHHHHHHHHHH----HHHHHHH
Confidence            347899999999999999999998876422233  788888775442 11    11221 111112221    1233334


Q ss_pred             hcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 015668          341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS  387 (403)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~  387 (403)
                      ...+..+|++..+..+..|..+ +.......+.+||++++ +++.+|.
T Consensus        94 ~~~~~~vi~~~~~~~~~~r~~~-~~~~~~~~~~~v~L~a~~e~~~~R~  140 (200)
T 3uie_A           94 ADAGIICIASLISPYRTDRDAC-RSLLPEGDFVEVFMDVPLSVCEARD  140 (200)
T ss_dssp             HHTTCEEEEECCCCCHHHHHHH-HHTSCTTSEEEEEECCCHHHHHHHC
T ss_pred             HhCCceEEEecCCchHHHHHHH-HHhcCCCCEEEEEEeCCHHHHHHhc
Confidence            5688999999999998888753 33332226778999997 8999996

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=98.85  E-value=1.3e-08  Score=107.22  Aligned_cols=115  Identities=15%  Similarity=0.082  Sum_probs=79.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHHHHhhcCCCcccCCCh-HHHHHHHHHHHHHHHHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYS-ERFQCLMGRANAIFDVLLSRAS  341 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir~~l~~~g~~~~~~~~-~~~~~~~~~a~~~~~~ll~~al  341 (403)
                      .+.+|+|+|+|||||||+|+.|++.+.  +..++.++.|.+|..+.. +    ..+. ...+..++++    .+++..++
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~-~----~~fs~~dree~~r~i----~eva~~~l  121 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNK-N----LGFSPEDREENVRRI----AEVAKLFA  121 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTT-T----CCSSHHHHHHHHHHH----HHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCc-c----ccCChhhhHHHHHHH----HHHHHHHH
Confidence            468999999999999999999998762  123677877877764421 1    1122 1112222222    22334456


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHH
Q 015668          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSV  388 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~  388 (403)
                      +.|..||.|.++.++..|..+.+.+.+.. ++.+|+|++| +++.+|+.
T Consensus       122 ~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~  170 (630)
T 1x6v_B          122 DAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDV  170 (630)
T ss_dssp             HTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCT
T ss_pred             hCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhc
Confidence            78999999988888777776666666554 6889999997 89999976

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=98.85  E-value=2.5e-08  Score=91.04  Aligned_cols=116  Identities=20%  Similarity=0.262  Sum_probs=75.1

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH-HHHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHHHHHhc
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLSRASR  342 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~-ir~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~~al~  342 (403)
                      +|++.|+|||||+|.|+.|++.+.   +.+||+.+ +|+++. .+.    ..+......++.-    ......++...+.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g---~~~istGdllR~~i~-~~t----~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~   73 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG---FVHISTGDILREAVQ-KGT----PLGKKAKEYMERGELVPDDLIIALIEEVFP   73 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHH-HTC----HHHHHHHHHHHHTCCCCHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC---CeEEcHHHHHHHHHH-hcC----hhhhhHHHHHhcCCcCCHHHHHHHHHHhhc
Confidence            578899999999999999999986   88999855 565543 121    0111112222210    1233456666677


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHhcCC-c-EEEEEECCh-HHHHHHHHHhc
Q 015668          343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-K-IAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~-~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      ....+|+|.---+..+-+.+.+.+...+ . -.++++++| +++++|...|.
T Consensus        74 ~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~  125 (206)
T 3sr0_A           74 KHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRR  125 (206)
T ss_dssp             SSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             cCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCc
Confidence            7778999985555554444334444443 3 367789998 79999999984

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=98.84  E-value=2.3e-08  Score=91.44  Aligned_cols=118  Identities=18%  Similarity=0.203  Sum_probs=69.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHHHHH-
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLSRA-  340 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~~a-  340 (403)
                      +..|+++|+|||||||+|+.|++.+.   +.++++|++..+....+.    ..+.....++..-    .+....++..+ 
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~li~~~~~~~t----~~g~~i~~~~~~g~~~~~~~~~~~i~~~l   77 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEYG---LAHLSTGDMLREAIKNGT----KIGLEAKSIIESGNFVGDEIVLGLVKEKF   77 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTC------CCHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC---ceEEehhHHHHHHHHcCC----HHHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence            45789999999999999999999886   788888776543211111    0111111111100    01111222222 


Q ss_pred             --hcCCCeEEEeCCCCCHHHHHHHHH-HHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668          341 --SRTPRNFIIDQTNVFKSARKRKLR-LFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       341 --l~~g~~vIlD~Tn~~~~~R~~~~~-~~~~~~--~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                        +..+..+|+|....+..... .++ .+...+  .-.+|++++| +++++|...|.
T Consensus        78 ~~~~~~~~~i~dg~~~~~~~~~-~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~  133 (217)
T 3be4_A           78 DLGVCVNGFVLDGFPRTIPQAE-GLAKILSEIGDSLTSVIYFEIDDSEIIERISGRC  133 (217)
T ss_dssp             HTTTTTTCEEEESCCCSHHHHH-HHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             hccccCCCEEEeCCCCCHHHHH-HHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence              23478899997544443333 333 333332  3467899997 89999999885

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.82  E-value=3.3e-08  Score=103.54  Aligned_cols=116  Identities=14%  Similarity=0.152  Sum_probs=81.2

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCC---ccEEEeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE---KRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSR  339 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~---~~~v~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~  339 (403)
                      +.+.+|+++|+|||||||+|+.|++.+..   ..++.++.|.+|..+.  +..   .+.. .....++++    ..++..
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~--~~~---~f~~~er~~~i~ri----~~v~~~  464 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELS--SEL---GFTREDRHTNIQRI----AFVATE  464 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTC--TTC---CCSHHHHHHHHHHH----HHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhc--ccc---CCChhHHHHHHHHH----HHHHHH
Confidence            45689999999999999999999988652   2368898999887642  321   1221 111122222    224444


Q ss_pred             HhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 015668          340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV  388 (403)
Q Consensus       340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~  388 (403)
                      +++.|..||.|.++.++..|....+.+...+.+.+||+++| ++|.+|..
T Consensus       465 ~~~~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~  514 (573)
T 1m8p_A          465 LTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK  514 (573)
T ss_dssp             HHHTTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCS
T ss_pred             HHhCCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhc
Confidence            55789999999999889888866555554346788999998 89999964

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.76  E-value=1e-07  Score=84.79  Aligned_cols=118  Identities=14%  Similarity=0.136  Sum_probs=70.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN  346 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~  346 (403)
                      ++++++|+|||||||+++.++....  ..+.++.|.+++... .|...+...........+.    +...+...+..+..
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~~--g~~~i~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~   75 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQLD--NSAYIEGDIINHMVV-GGYRPPWESDELLALTWKN----ITDLTVNFLLAQND   75 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS--SEEEEEHHHHHTTCC-TTCCCGGGCHHHHHHHHHH----HHHHHHHHHHTTCE
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccC--CeEEEcccchhhhhc-cccccCccchhHHHHHHHH----HHHHHHHHHhcCCc
Confidence            6899999999999999999988654  257888888765431 1211111100111112222    22223333457789


Q ss_pred             EEEeCCCCCHHHHHHHHHHHh--cCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          347 FIIDQTNVFKSARKRKLRLFV--NFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       347 vIlD~Tn~~~~~R~~~~~~~~--~~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      +|+|.. ..+..++.+.+.+.  ... ++.++++.++ +++.+|...|..
T Consensus        76 ~ild~~-~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~  124 (189)
T 2bdt_A           76 VVLDYI-AFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKK  124 (189)
T ss_dssp             EEEESC-CCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC
T ss_pred             EEEeec-cCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccc
Confidence            999986 35555544333332  223 5667777776 899999988753

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=98.75  E-value=7.9e-08  Score=88.50  Aligned_cols=120  Identities=21%  Similarity=0.300  Sum_probs=70.8

Q ss_pred             CCCCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH-HHHHhhcCCCcccCCChHHHHHHHHH--------HHHH
Q 015668          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYSERFQCLMGR--------ANAI  332 (403)
Q Consensus       262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~-ir~~l~~~g~~~~~~~~~~~~~~~~~--------a~~~  332 (403)
                      ..+.+++|++.|+|||||+|.|+.|++.+.   +.+||+.+ +|+++. .+.    ..+.....+++.        ...+
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g---~~hIstGdllR~~i~-~~t----~lg~~~~~~~~~G~lVpde~~~~l   96 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFH---FNHLSSGDLLRAEVQ-SGS----PKGKELKAMMERGELVPLEVVLAL   96 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHHHC---CEEECHHHHHHHHHT-TCC----HHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHHHC---CceEcHHHHHHHHHH-cCC----chHHHHHHHHhcCCCCCHHHHHHH
Confidence            335689999999999999999999999986   88999865 455542 221    001111111111        1112


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          333 FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      +...+.........+|+|.---+..+ ...+.  .... ...++++++| +++.+|...|..
T Consensus        97 v~~~l~~~~~~~~g~ilDGfPRt~~Q-a~~l~--~~~~~~~~vi~l~v~~e~~~~Rl~~R~~  155 (217)
T 3umf_A           97 LKEAMIKLVDKNCHFLIDGYPRELDQ-GIKFE--KEVCPCLCVINFDVSEEVMRKRLLKRAE  155 (217)
T ss_dssp             HHHHHHHHTTTCSEEEEETBCSSHHH-HHHHH--HHTCCCSEEEEEECCHHHHHHHHSCC--
T ss_pred             HHHHHhhccccccCcccccCCCcHHH-HHHHH--HhCCccCEEEeccCCHHHHHHHHhcccc
Confidence            22222233345678999983333332 22222  1222 4467788998 799999988854

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.72  E-value=2.9e-08  Score=93.28  Aligned_cols=119  Identities=13%  Similarity=0.109  Sum_probs=70.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH--HHhhc-CCCcc------------c--C----CChHHHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL--EQMKV-PGLLR------------K--H----NYSERFQCL  325 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir--~~l~~-~g~~~------------~--~----~~~~~~~~~  325 (403)
                      .+|+++|+|||||||+|+.|++.++   +.+++.|.+.  ..+.+ .+..+            .  .    .++.  ...
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~---~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~f   76 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETG---WPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDA--ESA   76 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC---CCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCH--HHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCC---CeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccH--HHH
Confidence            5899999999999999999999876   6778888753  11100 00000            0  0    0110  111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhc----CC-cEEEEEECCh--HHHHHHHHHhccc--cCc
Q 015668          326 MGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN----FR-KIAVVVFPKP--EDLKIRSVKRFKE--MGK  396 (403)
Q Consensus       326 ~~~a~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~----~~-~~~vv~l~~p--e~~~~R~~~R~~~--~g~  396 (403)
                      .+.+    ...+ .++.+|..+|++....  ...+.+   +..    .+ .+.+++++.|  +++.+|+.+|..+  .+.
T Consensus        77 ~~~~----~~~i-~~~~~g~~vIl~gg~~--~~~~~~---~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml~~~  146 (253)
T 2ze6_A           77 HRRL----IFEV-DWRKSEEGLILEGGSI--SLLNCM---AKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMFAIR  146 (253)
T ss_dssp             HHHH----HHHH-HTTTTSSEEEEEECCH--HHHHHH---HHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHH----HHHH-HHHhCCCCeEEeccHH--HHHHHH---HhcccccccCceEEEEecchhHHHHHHHHHHHHHHHHhcC
Confidence            1122    2233 4457888889986532  122222   222    22 5677888885  7899999999865  455


Q ss_pred             cccc
Q 015668          397 EQIM  400 (403)
Q Consensus       397 ~Vp~  400 (403)
                      .+++
T Consensus       147 ~~~~  150 (253)
T 2ze6_A          147 EDRP  150 (253)
T ss_dssp             SSSC
T ss_pred             cccc
Confidence            4543

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=98.70  E-value=1.3e-07  Score=87.37  Aligned_cols=120  Identities=20%  Similarity=0.229  Sum_probs=68.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRA  340 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~a  340 (403)
                      .+..|+++|+|||||||+|+.|++.+.   +.++++|++..+....+.    ........+...    .......++..+
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~li~~~~~~~~----~~g~~i~~~~~~g~~~~~~~~~~~i~~~   87 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFC---VCHLATGDMLRAMVASGS----ELGKKLKATMDAGKLVSDEMVLELIEKN   87 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHHHHTC----HHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHHHHHHHcCC----hhHHHHHHHHHCCCcCCHHHHHHHHHHH
Confidence            357899999999999999999999886   678888776443211110    000100111100    001112223222


Q ss_pred             hc---CCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668          341 SR---TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       341 l~---~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      +.   .+..+|+|....+....+.+.+.+...+  .-.+|+++.+ +++++|...|.
T Consensus        88 l~~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~  144 (233)
T 1ak2_A           88 LETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRL  144 (233)
T ss_dssp             HTSGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCE
T ss_pred             HhcccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence            22   2467999974344443333333333322  4467899997 89999998884

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.69  E-value=5.4e-08  Score=87.66  Aligned_cols=112  Identities=13%  Similarity=0.094  Sum_probs=65.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP  344 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g  344 (403)
                      ..++|+++|+|||||||+++.+++.+.   +.+++.|.+..+..  |..-...+....+.....   ....++..+ ..+
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~---~~~i~~d~~~~~~~--g~~i~~~~~~~~~~~~~~---~e~~~l~~l-~~~   94 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLN---VPFIDLDWYIEERF--HKTVGELFTERGEAGFRE---LERNMLHEV-AEF   94 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHT---CCEEEHHHHHHHHH--TSCHHHHHHHHHHHHHHH---HHHHHHHHH-TTC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcC---CCEEcchHHHHHHh--CCcHHHHHHhcChHHHHH---HHHHHHHHH-hhc
Confidence            467999999999999999999999886   66788898766542  211000000000111111   112233333 356


Q ss_pred             CeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 015668          345 RNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV  388 (403)
Q Consensus       345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~  388 (403)
                      .++||+........+. .++.+..  ...+|++++| +++++|+.
T Consensus        95 ~~~vi~~ggg~~~~~~-~~~~l~~--~~~vi~L~~~~e~l~~Rl~  136 (199)
T 3vaa_A           95 ENVVISTGGGAPCFYD-NMEFMNR--TGKTVFLNVHPDVLFRRLR  136 (199)
T ss_dssp             SSEEEECCTTGGGSTT-HHHHHHH--HSEEEEEECCHHHHHHHHH
T ss_pred             CCcEEECCCcEEccHH-HHHHHHc--CCEEEEEECCHHHHHHHHh
Confidence            7788885433222111 1223332  3467889887 89999998

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.69  E-value=3.6e-08  Score=102.71  Aligned_cols=114  Identities=21%  Similarity=0.253  Sum_probs=78.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRAS  341 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~al  341 (403)
                      .+.+|+++|+|||||||+|+.|++.+..  ..+.+++.|.+++.+.  +..   .+.. .....++.+.    ..+..++
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~--~~~---~f~~~er~~~l~~i~----~~~~~~l  441 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLS--RGL---GFSKEDRITNILRVG----FVASEIV  441 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTC--TTC---CSSHHHHHHHHHHHH----HHHHHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhc--ccc---cccHHHHHHHHHHHH----HHHHHHH
Confidence            4689999999999999999999887542  2367899999888753  321   1221 1111122221    2334455


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 015668          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV  388 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~  388 (403)
                      +.|..||+|.+++++..|..+.+.+.+ ..+.+|++++| +++++|+.
T Consensus       442 ~~G~~VI~d~~~~~~~~r~~~~~~l~~-~d~~vV~L~~~~e~~~~Rl~  488 (546)
T 2gks_A          442 KHNGVVICALVSPYRSARNQVRNMMEE-GKFIEVFVDAPVEVCEERDV  488 (546)
T ss_dssp             HTTCEEEEECCCCCHHHHHHHHTTSCT-TCEEEEEEECCGGGHHHHCC
T ss_pred             hCCCEEEEEcCCCCHHHHHHHHHHhhc-CCEEEEEEeCCHHHHHHHhh
Confidence            789999999999999887754443333 35678899887 89999975

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.65  E-value=1.7e-07  Score=84.30  Aligned_cols=123  Identities=14%  Similarity=0.053  Sum_probs=67.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCcc-EEEe---ccHHHHHHhhcCCCcccCCChHHHHHHH---HHHHHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKR-YILL---GTNLILEQMKVPGLLRKHNYSERFQCLM---GRANAIFDVLLS  338 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~-~v~l---s~D~ir~~l~~~g~~~~~~~~~~~~~~~---~~a~~~~~~ll~  338 (403)
                      +.+|+++|+|||||||+|+.|++.+.... ++..   ..+.+++.+...+. . .........+.   .+.. .+...+.
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~~~~~~~~~~r~~-~~~~~i~   80 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKK-K-DLLTPLTFSLIHATDFSD-RYERYIL   80 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHTT-T-SCCCHHHHHHHHHHHHHH-HHHHTHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhcccc-c-cCCCHHHHHHHHHHHHHH-HHHHHHH
Confidence            46899999999999999999998775421 3222   12344443321110 0 01111111111   1111 1223344


Q ss_pred             HHhcCCCeEEEeCCCCCHHHH-------HHHHHHHhcCC--cEEEEEECCh-HHHHHHHH-Hhc
Q 015668          339 RASRTPRNFIIDQTNVFKSAR-------KRKLRLFVNFR--KIAVVVFPKP-EDLKIRSV-KRF  391 (403)
Q Consensus       339 ~al~~g~~vIlD~Tn~~~~~R-------~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~-~R~  391 (403)
                      .++..|..||+|....+....       ..+++.+....  .-.++++++| +++++|+. +|.
T Consensus        81 ~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~  144 (213)
T 2plr_A           81 PMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKR  144 (213)
T ss_dssp             HHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred             HHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence            456789999999754322111       12344444432  3356788887 89999998 775

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=98.63  E-value=2.2e-07  Score=85.23  Aligned_cols=117  Identities=16%  Similarity=0.207  Sum_probs=65.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHH-HH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLL-SR  339 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll-~~  339 (403)
                      .+.+|+++|+|||||||+|+.|++.+.   +.+++.|.+.......+..    .+.....+...    .......++ +.
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~~~~~~~~~~----~g~~i~~~~~~g~~~~~~~~~~~~~~~   78 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHFE---LKHLSSGDLLRDNMLRGTE----IGVLAKAFIDQGKLIPDDVMTRLALHE   78 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHSS---SEEEEHHHHHHHHHHHTCH----HHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHcC---CeEEechHHHHHhhhcCCh----HHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence            357899999999999999999999886   6788887654332111110    00000000000    000001111 11


Q ss_pred             Hhc-CCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          340 ASR-TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       340 al~-~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      ... .+..+|+|....+..... .+..+  ...-.++++++| +++++|..+|.
T Consensus        79 l~~~~~~~~vid~~~~~~~~~~-~l~~~--~~~~~vi~L~~~~~~~~~R~~~R~  129 (227)
T 1zd8_A           79 LKNLTQYSWLLDGFPRTLPQAE-ALDRA--YQIDTVINLNVPFEVIKQRLTARW  129 (227)
T ss_dssp             HHTCTTSCEEEESCCCSHHHHH-HHHTT--SCCCEEEEEECCHHHHHHHHTCEE
T ss_pred             HhcccCCCEEEeCCCCCHHHHH-HHHHh--cCCCEEEEEECCHHHHHHHHHcCc
Confidence            111 467899999655543322 22222  123357888887 89999998874

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.63  E-value=1.6e-07  Score=81.55  Aligned_cols=97  Identities=20%  Similarity=0.139  Sum_probs=62.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN  346 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~  346 (403)
                      .+|+++|+|||||||+++.|++.+.   +.+++.|.+.....  .          .....+        . ..++.++..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~---~~~i~~d~~~~~~~--~----------~~~~~~--------~-~~~l~~~~~   57 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELK---YPIIKGSSFELAKS--G----------NEKLFE--------H-FNKLADEDN   57 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHC---CCEEECCCHHHHTT--C----------HHHHHH--------H-HHHHTTCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC---CeeecCcccccchh--H----------HHHHHH--------H-HHHHHhCCC
Confidence            5899999999999999999999876   56777776554321  0          011111        1 123467888


Q ss_pred             EEEeCCC---------------CCHHHHHHHHHHHhcC--CcEEEEEECCh-HHHHHHHHHhc
Q 015668          347 FIIDQTN---------------VFKSARKRKLRLFVNF--RKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       347 vIlD~Tn---------------~~~~~R~~~~~~~~~~--~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      +|.|...               +....+.    .+...  .+..+|++++| +++.+|+.+|.
T Consensus        58 vi~dr~~~~~~v~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~  116 (173)
T 3kb2_A           58 VIIDRFVYSNLVYAKKFKDYSILTERQLR----FIEDKIKAKAKVVYLHADPSVIKKRLRVRG  116 (173)
T ss_dssp             EEEESCHHHHHHHTTTBTTCCCCCHHHHH----HHHHHHTTTEEEEEEECCHHHHHHHHHHHS
T ss_pred             eEEeeeecchHHHHHHHHHhhHhhHHHHH----HHhccCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            9998421               2222222    22221  24568888886 89999999984

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.62  E-value=1.1e-07  Score=83.96  Aligned_cols=107  Identities=15%  Similarity=0.138  Sum_probs=61.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~  345 (403)
                      +..|+++|+|||||||+|+.|++.+.   +.+++.|.+++++.  |..-...+...-+.....   ....++..+... .
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~---~~~i~~d~~~~~~~--g~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~-~   75 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTK---RILYDSDKEIEKRT--GADIAWIFEMEGEAGFRR---REREMIEALCKL-D   75 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHH--TSCHHHHHHHHHHHHHHH---HHHHHHHHHHHS-S
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC---CCEEEChHHHHHHc--CCChhhHHHHhCHHHHHH---HHHHHHHHHHhc-C
Confidence            56899999999999999999999886   67889999877653  321000000000111111   111233233333 3


Q ss_pred             eEEEeC---CCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 015668          346 NFIIDQ---TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS  387 (403)
Q Consensus       346 ~vIlD~---Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~  387 (403)
                      ++|++.   +.+....|.    .+...  -.+|++++| +++++|+
T Consensus        76 ~~vi~~gg~~~~~~~~~~----~l~~~--~~vi~L~~~~e~l~~Rl  115 (185)
T 3trf_A           76 NIILATGGGVVLDEKNRQ----QISET--GVVIYLTASIDTQLKRI  115 (185)
T ss_dssp             SCEEECCTTGGGSHHHHH----HHHHH--EEEEEEECCHHHHHHHH
T ss_pred             CcEEecCCceecCHHHHH----HHHhC--CcEEEEECCHHHHHHHH
Confidence            345544   334444443    23322  366788887 8999999

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.62  E-value=4e-07  Score=80.20  Aligned_cols=116  Identities=15%  Similarity=0.084  Sum_probs=67.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRAS  341 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~al  341 (403)
                      ...+|+++|++||||||+++.|+..+.  +..++.++.|.++..+.. .    ..+.. ..+...++...    ....+.
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~----~~~~~~   74 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNK-N----LGFSPEDREENVRRIAE----VAKLFA   74 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTT-T----CCSSHHHHHHHHHHHHH----HHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhh-c----cccccccHHHHHHHHHH----HHHHHH
Confidence            357899999999999999999988642  112566777776654321 1    11111 11222222211    111122


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHH
Q 015668          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVK  389 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~  389 (403)
                      ..+..++-+.++.+...|..+.+.+...+ ...+|++++| +++++|+.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~  124 (179)
T 2pez_A           75 DAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK  124 (179)
T ss_dssp             HTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTT
T ss_pred             HCCCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhh
Confidence            56666666666666555544333333333 5677899997 889999654

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.60  E-value=2.3e-07  Score=82.23  Aligned_cols=118  Identities=17%  Similarity=0.139  Sum_probs=63.8

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccH---------HHHHHhhcCCCcccCCChHHHHHHHHHH--HHHHHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN---------LILEQMKVPGLLRKHNYSERFQCLMGRA--NAIFDVL  336 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D---------~ir~~l~~~g~~~~~~~~~~~~~~~~~a--~~~~~~l  336 (403)
                      +|+++|+|||||||+++.|++.+...++.++++|         .+++.+. .|.     ...........+  .+.+..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~i~~~~~-~g~-----~~~~~~~~~~~~~~~~~l~~~   75 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILL-TEE-----LDERTELLLFEASRSKLIEEK   75 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHH-HSC-----CCHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchHHHHHHHHc-CCC-----CCHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999986621124455544         2332221 221     111111111011  1223344


Q ss_pred             HHHHhcCCCeEEEeCC------------CCCHHHHHHHHHHHhcC-CcEEEEEECCh-HHHHHHHHHhc
Q 015668          337 LSRASRTPRNFIIDQT------------NVFKSARKRKLRLFVNF-RKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       337 l~~al~~g~~vIlD~T------------n~~~~~R~~~~~~~~~~-~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      +..++.++..+|+|..            ......-..+...+... ..-.+|++++| +++++|..+|.
T Consensus        76 i~~~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~  144 (195)
T 2pbr_A           76 IIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKN  144 (195)
T ss_dssp             HHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTT
T ss_pred             HHHHHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccC
Confidence            5556688999999942            22222111111112211 24467889887 89999998654

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.59  E-value=4.2e-07  Score=79.19  Aligned_cols=108  Identities=19%  Similarity=0.239  Sum_probs=62.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN  346 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~  346 (403)
                      .+|+++|+|||||||+|+.|++.+.   +.+++.|.++.++.  |..-...+...-+......   ...++.. +. +..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg---~~~id~d~~~~~~~--g~~~~~~~~~~~~~~~~~~---~~~~~~~-l~-~~~   72 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALG---YEFVDTDIFMQHTS--GMTVADVVAAEGWPGFRRR---ESEALQA-VA-TPN   72 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHH--CSCHHHHHHHHHHHHHHHH---HHHHHHH-HC-CSS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC---CcEEcccHHHHHHh--CCCHHHHHHHcCHHHHHHH---HHHHHHH-hh-cCC
Confidence            4789999999999999999999876   67888898876652  3210000000001111111   1122222 33 456


Q ss_pred             EEEeCCC---CCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH--Hh
Q 015668          347 FIIDQTN---VFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV--KR  390 (403)
Q Consensus       347 vIlD~Tn---~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~--~R  390 (403)
                      +||+...   +.+..+.    .+..  .-.+|++++| +++++|..  .|
T Consensus        73 ~vi~~g~~~~~~~~~~~----~l~~--~~~~i~l~~~~e~~~~R~~~~~r  116 (173)
T 1e6c_A           73 RVVATGGGMVLLEQNRQ----FMRA--HGTVVYLFAPAEELALRLQASLQ  116 (173)
T ss_dssp             EEEECCTTGGGSHHHHH----HHHH--HSEEEEEECCHHHHHHHHHHHHC
T ss_pred             eEEECCCcEEeCHHHHH----HHHc--CCeEEEEECCHHHHHHHHhhccC
Confidence            7777432   3444333    2222  1356788887 89999998  77

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=98.52  E-value=1.8e-07  Score=85.04  Aligned_cols=112  Identities=19%  Similarity=0.192  Sum_probs=63.6

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH-HHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-EQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR  342 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir-~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~al~  342 (403)
                      .|+++|+|||||||+|+.|++.+.   +.++++|++. +.+. .|..    .......+...    ....+..++..++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g---~~~i~~d~~~r~~~~-~~~~----~g~~i~~~~~~g~~~~~~~~~~~i~~~l~   73 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYG---IPQISTGDMLRAAVK-SGSE----LGKQAKDIMDAGKLVTDELVIALVKERIA   73 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHH-HTCT----TTGGGHHHHHHTCCCCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CeEEeHHHHHHHHHH-cCCh----HHHHHHHHHHCCCcCCHHHHHHHHHHHHh
Confidence            478999999999999999999875   6778887654 4332 1210    01110111100    00112223333333


Q ss_pred             C---CCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668          343 T---PRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       343 ~---g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      .   +..+|+|.........    +.+...+  .-.++++++| +++++|..+|.
T Consensus        74 ~~~~~~~~i~dg~~~~~~~~----~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~  124 (214)
T 1e4v_A           74 QEDCRNGFLLDGFPRTIPQA----DAMKEAGINVDYVLEFDVPDELIVDRIVGRR  124 (214)
T ss_dssp             SGGGGGCEEEESCCCSHHHH----HHHHHTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred             ccccCCCEEEeCCCCCHHHH----HHHHhcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence            3   3579999853333322    2233322  3467888887 89999998875

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.51  E-value=1.8e-07  Score=82.76  Aligned_cols=116  Identities=13%  Similarity=0.099  Sum_probs=61.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHH-HHHhhcCCCcccC----CChHH-HHHHHHHHHHHHHHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLI-LEQMKVPGLLRKH----NYSER-FQCLMGRANAIFDVLLS  338 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~i-r~~l~~~g~~~~~----~~~~~-~~~~~~~a~~~~~~ll~  338 (403)
                      .+|+++|+|||||||+|+.|++.++..  .+.+++.|++ ++.+...+.....    ..... .......    +...+.
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~   77 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQID----AAKGIA   77 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHH----HHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHH----HHHHHH
Confidence            579999999999999999999876532  2567776654 3333112211100    01111 0111111    112234


Q ss_pred             HHh--cCCCeEEEeCCCC--CHHH-----HHHHHHHHhcCCcEEEEEECCh-HHHHHH-HHH
Q 015668          339 RAS--RTPRNFIIDQTNV--FKSA-----RKRKLRLFVNFRKIAVVVFPKP-EDLKIR-SVK  389 (403)
Q Consensus       339 ~al--~~g~~vIlD~Tn~--~~~~-----R~~~~~~~~~~~~~~vv~l~~p-e~~~~R-~~~  389 (403)
                      .++  ..+..||+|....  ++..     ...+++.+   ..-.++++++| +++++| ..+
T Consensus        78 ~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~vi~l~~~~~~~~~rr~~~  136 (194)
T 1nks_A           78 EEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI---NPSVIFLLEADPKIILSRQKRD  136 (194)
T ss_dssp             HHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHH---CCSEEEEEECCHHHHHHHHHHC
T ss_pred             HHhhccCCCEEEECCchhhccccccccCCCHHHHHhc---CCCEEEEEeCCHHHHHHHHHhh
Confidence            445  7889999997421  1100     01223322   23457788886 666644 766

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.50  E-value=2e-07  Score=82.38  Aligned_cols=38  Identities=37%  Similarity=0.490  Sum_probs=32.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      .+|+|+|+|||||||+|+.|++.++   +.+++.|.++.++
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg---~~~id~D~~~~~~   40 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALG---VGLLDTDVAIEQR   40 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC---CCEEeCchHHHHH
Confidence            3589999999999999999999876   6788999987665

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.49  E-value=1.8e-07  Score=81.20  Aligned_cols=106  Identities=15%  Similarity=0.133  Sum_probs=61.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCc-ccC--CChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-RKH--NYSERFQCLMGRANAIFDVLLSRASRTP  344 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~-~~~--~~~~~~~~~~~~a~~~~~~ll~~al~~g  344 (403)
                      .|+++|+|||||||+|+.|++.+.   +.+++.|.+...+.  |.. +..  .+..   ......   ...++. .+...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~~~~~--g~~~~~~~~~~~~---~~~~~~---~~~~l~-~l~~~   69 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN---IPFYDVDEEVQKRE--GLSIPQIFEKKGE---AYFRKL---EFEVLK-DLSEK   69 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT---CCEEEHHHHHHHHH--TSCHHHHHHHSCH---HHHHHH---HHHHHH-HHTTS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC---CCEEECcHHHHHHc--CCCHHHHHHHhCh---HHHHHH---HHHHHH-HHhcc
Confidence            589999999999999999999876   56788898766542  311 000  0010   111111   112232 23334


Q ss_pred             CeEEEeC---CCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          345 RNFIIDQ---TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       345 ~~vIlD~---Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      ..+||+.   ..+.+..+.    .+...  -.+|++++| +++++|..+|.
T Consensus        70 ~~~Vi~~g~~~~~~~~~~~----~l~~~--~~~i~l~~~~e~~~~R~~~r~  114 (168)
T 2pt5_A           70 ENVVISTGGGLGANEEALN----FMKSR--GTTVFIDIPFEVFLERCKDSK  114 (168)
T ss_dssp             SSEEEECCHHHHTCHHHHH----HHHTT--SEEEEEECCHHHHHHHCBCTT
T ss_pred             CCeEEECCCCEeCCHHHHH----HHHcC--CEEEEEECCHHHHHHHHhCCC
Confidence            4566652   234444333    23332  367788887 89999998764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.47  E-value=1.1e-06  Score=81.32  Aligned_cols=122  Identities=16%  Similarity=0.073  Sum_probs=68.2

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH---------HHHHHhhcCCCcccCCChHHHHHHHHHHHH--H
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN---------LILEQMKVPGLLRKHNYSERFQCLMGRANA--I  332 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D---------~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~--~  332 (403)
                      ....+|++.|+|||||||+++.+++.+.. ...++.+.         .+++.+ ..+..    ..+.-..+.-.+.+  .
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~~~~~g~~i~~~~-~~~~~----~~~~~~~ll~~a~r~~~   97 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPGGVPTGEEIRKIV-LEGND----MDIRTEAMLFAASRREH   97 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTTTCHHHHHHHHHT-TC-------CCHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCCCCchHHHHHHHH-hCCCC----CCHHHHHHHHHHHHHHH
Confidence            35689999999999999999999998763 22222221         223322 12210    11111111111111  0


Q ss_pred             HHHHHHHHhcCCCeEEEe----------C--CCCCHHHHHHHHHHHhc-CC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          333 FDVLLSRASRTPRNFIID----------Q--TNVFKSARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       333 ~~~ll~~al~~g~~vIlD----------~--Tn~~~~~R~~~~~~~~~-~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      +.+.+..++.+|..||+|          .  .++...... ++..+.. .. +-.++++++| +++++|..+|..
T Consensus        98 ~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~-~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~  171 (229)
T 4eaq_A           98 LVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVR-ALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSR  171 (229)
T ss_dssp             CCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHH-HHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHH-HHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence            112234556789999999          3  245555444 3444432 22 5567889887 899999999853

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=98.47  E-value=3.2e-07  Score=83.82  Aligned_cols=114  Identities=20%  Similarity=0.184  Sum_probs=63.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH-hhcCCCcccCCChHHHHHHH--------HHHHHHH-H
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLM--------GRANAIF-D  334 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~-l~~~g~~~~~~~~~~~~~~~--------~~a~~~~-~  334 (403)
                      .+.+|+++|+|||||||+++.|++.+.   +.+++.|.+... .. .+..    .+......+        +.....+ .
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~~~~~~-~~~~----~g~~i~~~~~~g~~~~~~~~~~~~~~   75 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQ---LAHISAGDLLRAEIA-AGSE----NGKRAKEFMEKGQLVPDEIVVNMVKE   75 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC---CEECCHHHHHHHHHH-HTCH----HHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHHHHHHH-cCCc----hhHHHHHHHHcCCcCCHHHHHHHHHH
Confidence            356899999999999999999999886   678988775433 21 1100    000000000        0000101 1


Q ss_pred             HHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668          335 VLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       335 ~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      .+....+ .+..+|+|........    ++.+...+  .-.+|+++++ +++.+|...|.
T Consensus        76 ~~~~~~~-~~~~~vidg~~~~~~~----~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~  130 (222)
T 1zak_A           76 RLRQPDA-QENGWLLDGYPRSYSQ----AMALETLEIRPDTFILLDVPDELLVERVVGRR  130 (222)
T ss_dssp             HHHSHHH-HHTCEEEESCCCSHHH----HHHHHTTTCCCSEEEEEECCHHHHHHHHTTEE
T ss_pred             HHhhccc-cCCcEEEECCCCCHHH----HHHHHHcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence            1111111 2345777974443322    22233322  3467899997 89999998775

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.43  E-value=2.4e-07  Score=81.83  Aligned_cols=39  Identities=18%  Similarity=0.379  Sum_probs=30.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCcc--EEEeccHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLGTNLIL  304 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~--~v~ls~D~ir  304 (403)
                      ..+|+++|+|||||||+++.|++.++..+  +.+++.|++.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~   43 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVM   43 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHH
Confidence            35899999999999999999998765322  5667766543

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.42  E-value=6.4e-07  Score=79.59  Aligned_cols=110  Identities=19%  Similarity=0.172  Sum_probs=62.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHh-CCCccEEEeccHHHHHHhhcCCCcccCCChHH-H-HHHHHHHHHHHHHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKD-HPEKRYILLGTNLILEQMKVPGLLRKHNYSER-F-QCLMGRANAIFDVLLSRAS  341 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~-~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~-~-~~~~~~a~~~~~~ll~~al  341 (403)
                      .+..|+++|+|||||||+++.|++. +.   +.+++.|.+..+......... .+... . ....+...+    .++..+
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g---~~~id~d~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~----~l~~~~   80 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAELDG---FQHLEVGKLVKENHFYTEYDT-ELDTHIIEEKDEDRLLD----FMEPIM   80 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHSTT---EEEEEHHHHHHHTTCSCC-------CCCCCHHHHHHHHH----HHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCC---CEEeeHHHHHHHhhhhhhHHH-HhhhcccCCCCHHHHHH----HHHHHH
Confidence            3578999999999999999999998 54   888999987655321111100 00000 0 000111111    122233


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      ..+..+|+|..+..         .+.....-.+|++++| +++++|..+|.
T Consensus        81 ~~~g~~vi~~~~~~---------~~~~~~~~~vi~l~~~~e~~~~Rl~~R~  122 (184)
T 1y63_A           81 VSRGNHVVDYHSSE---------LFPERWFHMVVVLHTSTEVLFERLTKRQ  122 (184)
T ss_dssp             TSSSEEEEECSCCT---------TSCGGGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             hccCCEEEeCchHh---------hhhhccCCEEEEEECCHHHHHHHHHhCC
Confidence            23446788865431         1221112257788887 89999999884

>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A

Probab=98.40  E-value=1.1e-06  Score=92.51  Aligned_cols=121  Identities=17%  Similarity=0.247  Sum_probs=80.6

Q ss_pred             cEEeCcCCCCCCeEEcCCCceEEecC----------------CCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCC
Q 015668           43 RVVLNPADCDLDFDIEDNGLKSSGLH----------------QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMED  106 (403)
Q Consensus        43 ~v~l~~~d~~~~l~is~d~l~~~~~~----------------~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~  106 (403)
                      .|+|||...+ +|.||+|+.+|+...                ...|.. +..|.+.-++.+|++||||.|.+        
T Consensus       411 ~vtldp~ta~-~l~~s~d~r~v~~~~~~~~~~~p~~~~~~~~~~rF~~-~~~VLg~~~f~sGrhyWEV~v~~--------  480 (602)
T 4b3n_A          411 DVTLATNNIS-HAVIAEDKRQVSSRNPQIMYQAPGTLFTFPSLTNFNY-CTGVLGSQSITSGKHYWEVDVSK--------  480 (602)
T ss_dssp             CCCEECCSCC-SCEECTTSSEEECCCC--------------------C-CCCEEESSCBSSSEEEEEEECTT--------
T ss_pred             EEEeCCCCCC-ceeEecCCCEEEECCccccccCCCccCCCCCcccCCC-CCEeccCCCCCCEEEEEEEEECC--------
Confidence            5899999887 699999999986431                123333 56789999999999999999863        


Q ss_pred             CCCCCCCcEEEEEecCCCC--------CCCCCCCCcceeEe-cCCce---eeCCCc-ccCCC---CCC---CCCEEEEEE
Q 015668          107 TPPDQQHVCRVGTSRGDDP--------VGKLGETEQSFGFG-GTGKF---SHGGNF-LNFGE---KFG---VGDTIICAI  167 (403)
Q Consensus       107 ~~~~~~~~~rVG~s~~~~~--------~~~lG~d~~Sygy~-~~G~~---~~~~~~-~~yG~---~f~---~gDVIGc~l  167 (403)
                           ...+.||++.....        ...++.+..+|+.. .+|..   +|+... ....+   +..   .=..||++|
T Consensus       481 -----~~~w~~Gv~~~~~~~~~~~~~~~~~~~~~~g~w~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~rvgv~l  555 (602)
T 4b3n_A          481 -----KSAWILGVCAGFQSDAMYNIEQNENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFV  555 (602)
T ss_dssp             -----CSCEEEEEECCCCTTTSSTHHHHCCCCGGGTEEEEEEETTTEEEEEECCCSSCCSSCEEEECCCSSCCSEEEEEE
T ss_pred             -----CeeEEEEEeeccccccccccCCCcccCCCCcEEEEEEecCCeEEEEeCCCcccccCCcccccccCCCCCEEEEEE
Confidence                 35689999863211        22456666788875 45543   233322 12221   111   125799999


Q ss_pred             ecCCCCCceEEEEe
Q 015668          168 DLESKPLATIGFAK  181 (403)
Q Consensus       168 dl~~~p~~~i~ftk  181 (403)
                      |.+.   +.|+|+-
T Consensus       556 d~~~---g~~sFy~  566 (602)
T 4b3n_A          556 DYEA---CTVSFFN  566 (602)
T ss_dssp             ETTT---TEEEEEE
T ss_pred             ecCC---CEEEEEe
Confidence            9998   8999984

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.39  E-value=1e-06  Score=79.53  Aligned_cols=109  Identities=15%  Similarity=0.123  Sum_probs=64.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC--------------------ccEEEeccHHHHHHhhcCCCccc---C---CC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--------------------KRYILLGTNLILEQMKVPGLLRK---H---NY  318 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~--------------------~~~v~ls~D~ir~~l~~~g~~~~---~---~~  318 (403)
                      ...+|+++|+|||||||+++.|++.++.                    ..+..++.|.+.+.+. .|..-.   .   .|
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   89 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLK-EGQFLEFDKYANNFY   89 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHH-TTCEEEEEEETTEEE
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHH-cCCCEEeHHhCCCee
Confidence            4678999999999999999999988853                    1244556666654432 221100   0   01


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEEC-Ch-HHHHHHHHHhcc
Q 015668          319 SERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFP-KP-EDLKIRSVKRFK  392 (403)
Q Consensus       319 ~~~~~~~~~~a~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~-~p-e~~~~R~~~R~~  392 (403)
                      ....            ..+..+++.|.+||+|.+.   ...+. +  ...+.  ...+||+. ++ +++.+|+.+|..
T Consensus        90 ~~~~------------~~i~~~l~~g~~vi~d~~~---~~~~~-l--~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~  149 (204)
T 2qor_A           90 GTLK------------SEYDLAVGEGKICLFEMNI---NGVKQ-L--KESKHIQDGIYIFVKPPSIDILLGRLKNRNT  149 (204)
T ss_dssp             EEEH------------HHHHHHHHTTCEEEEECCH---HHHHH-H--HHCSSCSCCEEEEEECSCHHHHHHHHHTCTT
T ss_pred             cCCH------------HHHHHHHHcCCeEEEEECH---HHHHH-H--HHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC
Confidence            1100            1222334789999999632   11111 1  12232  34667775 55 899999988864

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.37  E-value=2.7e-07  Score=81.39  Aligned_cols=106  Identities=14%  Similarity=0.082  Sum_probs=61.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChH--HHHHHHHHHHHHHHHHHHHHhc
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSE--RFQCLMGRANAIFDVLLSRASR  342 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~--~~~~~~~~a~~~~~~ll~~al~  342 (403)
                      ...+|+++|+|||||||+++.+++.+.   +.+++.|.+..+...........+..  ..+.+.+.+        ...+.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~   78 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSG---LKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDEL--------DNQMR   78 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHH--------HHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhC---CeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHH--------HHHHh
Confidence            356889999999999999999999876   67788888766542211111100000  011122221        12223


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      .|. +|+|.-+..         .+.....-.+|+++++ +++++|+.+|.
T Consensus        79 ~g~-~vv~~~~~~---------~~~~~~~~~vi~L~~~~e~l~~R~~~r~  118 (180)
T 3iij_A           79 EGG-VIVDYHGCD---------FFPERWFHIVFVLRTDTNVLYERLETRG  118 (180)
T ss_dssp             HCC-EEEECSCCT---------TSCGGGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             cCC-EEEEechhh---------hcchhcCCEEEEEECCHHHHHHHHHHcC
Confidence            353 455654321         0111113467789887 89999999885

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.37  E-value=3.7e-07  Score=80.16  Aligned_cols=107  Identities=16%  Similarity=0.171  Sum_probs=60.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN  346 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~  346 (403)
                      ..|+++|+|||||||+|+.|++.+.   +..++.|.+++...  |..-...+...-.......   ...++.. +.....
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~---~~~~d~d~~~~~~~--g~~~~~~~~~~g~~~~~~~---~~~~~~~-l~~~~~   75 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLD---LVFLDSDFLIEQKF--NQKVSEIFEQKRENFFREQ---EQKMADF-FSSCEK   75 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHT---CEEEEHHHHHHHHH--TSCHHHHHHHHCHHHHHHH---HHHHHHH-HTTCCS
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcC---CCEEcccHHHHHHc--CCCHHHHHHHcCHHHHHHH---HHHHHHH-HHccCC
Confidence            3688999999999999999999886   67889998876542  3210000000000111111   1122322 234456


Q ss_pred             EEEeCCC-CCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 015668          347 FIIDQTN-VFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR  390 (403)
Q Consensus       347 vIlD~Tn-~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R  390 (403)
                      +||+... ..-. +.     ++..  -.+|++++| +++.+|..+|
T Consensus        76 ~vi~~g~~~~~~-~~-----l~~~--~~~i~l~~~~e~~~~R~~~r  113 (175)
T 1via_A           76 ACIATGGGFVNV-SN-----LEKA--GFCIYLKADFEYLKKRLDKD  113 (175)
T ss_dssp             EEEECCTTGGGS-TT-----GGGG--CEEEEEECCHHHHTTCCCGG
T ss_pred             EEEECCCCEehh-hH-----HhcC--CEEEEEeCCHHHHHHHHhcc
Confidence            6676432 1111 11     2322  356788887 8899998877

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.36  E-value=2.6e-06  Score=75.41  Aligned_cols=118  Identities=18%  Similarity=0.177  Sum_probs=68.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP  344 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g  344 (403)
                      ..++|+++|+|||||||+++.++.. +..+.+.++.|.++.... .+....+.......  ...+.+.+..........+
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~-~~~g~i~i~~d~~~~~~~-~~~~~~~~~~~~~~--~~~v~~~l~~~~~~~~~~~   83 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL-PGVPKVHFHSDDLWGYIK-HGRIDPWLPQSHQQ--NRMIMQIAADVAGRYAKEG   83 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC-SSSCEEEECTTHHHHTCC-SSCCCTTSSSHHHH--HHHHHHHHHHHHHHHHHTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc-cCCCeEEEcccchhhhhh-cccccCCccchhhh--hHHHHHHHHHHHHHHhccC
Confidence            3689999999999999999999886 344578898888765432 11111111111100  1111111222222234567


Q ss_pred             CeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668          345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      ..+++|...- ...    ++.+.... ++..+++..+ +++++|...|.
T Consensus        84 ~~~~~~~~~~-~~~----l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~  127 (191)
T 1zp6_A           84 YFVILDGVVR-PDW----LPAFTALARPLHYIVLRTTAAEAIERCLDRG  127 (191)
T ss_dssp             CEEEECSCCC-TTT----THHHHTTCSCEEEEEEECCHHHHHHHHHTTC
T ss_pred             CeEEEeccCc-HHH----HHHHHhcCCCeEEEEecCCHHHHHHHHHhcC
Confidence            7899998532 111    22233222 5566777776 88999998885

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=98.32  E-value=4.4e-06  Score=77.33  Aligned_cols=111  Identities=14%  Similarity=0.159  Sum_probs=63.9

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHHHHHhc-
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLLSRASR-  342 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll~~al~-  342 (403)
                      +-+.|+|||||||.|+.|++.+.   +.+|+++++ |+.+. .+.    ..+.....+++.-    ......++...+. 
T Consensus        11 ~~~~G~pGsGKsT~a~~L~~~~g---~~~is~gdllR~~~~-~~t----~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~   82 (230)
T 3gmt_A           11 LILLGAPGAGKGTQANFIKEKFG---IPQISTGDMLRAAVK-AGT----PLGVEAKTYMDEGKLVPDSLIIGLVKERLKE   82 (230)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT---CCEECHHHHHHHHHH-TTC----HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHS
T ss_pred             eeeECCCCCCHHHHHHHHHHHhC---CCeeechHHHHHhcc-CCC----hHHHHHHHHHhhccccccHHHHHHHHHHHhC
Confidence            46789999999999999999886   788998654 54432 121    0011111111100    0111122322222 


Q ss_pred             --CCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668          343 --TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       343 --~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                        ....+|||.---+.. +..   .+.+..  .-.+++|++| +++++|+..|.
T Consensus        83 ~~~~~g~ILDGfPRt~~-Qa~---~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~  132 (230)
T 3gmt_A           83 ADCANGYLFDGFPRTIA-QAD---AMKEAGVAIDYVLEIDVPFSEIIERMSGRR  132 (230)
T ss_dssp             GGGTTCEEEESCCCSHH-HHH---HHHHTTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred             cccCCCeEecCCCCcHH-HHH---HHHHhCCCccEEEEEeCCHHHHHHHHHcCC
Confidence              245799998433332 222   233333  3467899998 89999999995

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.32  E-value=9.2e-07  Score=79.69  Aligned_cols=120  Identities=16%  Similarity=0.084  Sum_probs=59.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCcc--EEEec-----c---HHHHHHhhcCCCcccCCChHHHHHHHHHHH--HH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLG-----T---NLILEQMKVPGLLRKHNYSERFQCLMGRAN--AI  332 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~--~v~ls-----~---D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~--~~  332 (403)
                      .+.+|+++|+|||||||+++.|++.++...  ...+.     +   +.+++.+. .+.    .+........-.+.  +.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~-~~~----~~~~~~~~~~~~~~r~~~   82 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQ-KKS----DVEDHSVHLLFSANRWEQ   82 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHT-TSS----CCCHHHHHHHHHHHHHTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHh-cCC----CCCHHHHHHHHHHHHHHH
Confidence            357999999999999999999998653211  22221     1   12343332 111    11111111100000  01


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCCHHHH--------HHHHHHHhcC--CcEEEEEECCh-HHHHHHHHHh
Q 015668          333 FDVLLSRASRTPRNFIIDQTNVFKSAR--------KRKLRLFVNF--RKIAVVVFPKP-EDLKIRSVKR  390 (403)
Q Consensus       333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R--------~~~~~~~~~~--~~~~vv~l~~p-e~~~~R~~~R  390 (403)
                      + ..+..++..+..||+|....+.-.+        ..++..+...  ..-.+|++++| +++++|+.+|
T Consensus        83 ~-~~i~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~  150 (215)
T 1nn5_A           83 V-PLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG  150 (215)
T ss_dssp             H-HHHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC----
T ss_pred             H-HHHHHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC
Confidence            1 2344456789999999532111111        1234333322  13457888887 8899998654

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.30  E-value=1.1e-06  Score=76.53  Aligned_cols=41  Identities=20%  Similarity=0.369  Sum_probs=33.2

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      ..++.|+++|.|||||||+|+.|++.+.   +.++++|.+..+.
T Consensus         5 ~~~~~i~l~G~~GsGKSTva~~La~~lg---~~~id~D~~~~~~   45 (168)
T 1zuh_A            5 HHMQHLVLIGFMGSGKSSLAQELGLALK---LEVLDTDMIISER   45 (168)
T ss_dssp             ---CEEEEESCTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHH
T ss_pred             cccceEEEECCCCCCHHHHHHHHHHHhC---CCEEEChHHHHHH
Confidence            3578999999999999999999999876   6678889876654

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.29  E-value=2.6e-06  Score=74.15  Aligned_cols=39  Identities=15%  Similarity=0.236  Sum_probs=33.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      ..+|+++|+|||||||+++.++..+.   +.+++.|.+..++
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~---~~~id~d~~~~~~   42 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQEIEKR   42 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTT---CEEEEHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC---CCEEeccHHHHHH
Confidence            46799999999999999999999886   6788888876554

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.26  E-value=5.6e-06  Score=86.19  Aligned_cols=115  Identities=16%  Similarity=0.205  Sum_probs=65.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCc---cEEEeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK---RYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRA  340 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~---~~v~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~a  340 (403)
                      ..++|+|+|++||||||+++.|+..+...   .+..++.|.+++.+.  +..   .+.. .......++..    +....
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~--~~l---~f~~~~r~~~~r~i~~----v~q~l  438 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLS--SEL---GFSKAHRDVNVRRIGF----VASEI  438 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTT--SSC---CCSHHHHHHHHHHHHH----HHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhc--ccc---CCCHHHHHHHHHHHHH----HHHHH
Confidence            46899999999999999999999876421   245689998887642  111   1222 11112222221    22222


Q ss_pred             hcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 015668          341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV  388 (403)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~  388 (403)
                      ...+..+|..........|+...+.+...+.+.+|++++| +++.+|..
T Consensus       439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~  487 (552)
T 3cr8_A          439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDR  487 (552)
T ss_dssp             HHTTCEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC----------
T ss_pred             HhcCCEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhcc
Confidence            3455566665554456667666666666556788999998 89999875

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.20  E-value=7.2e-07  Score=80.33  Aligned_cols=120  Identities=16%  Similarity=0.061  Sum_probs=61.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCcc--EEEecc--------HHHHHHhhcCCCcccCCChHH-HHHHHHHHH-HH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLGT--------NLILEQMKVPGLLRKHNYSER-FQCLMGRAN-AI  332 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~--~v~ls~--------D~ir~~l~~~g~~~~~~~~~~-~~~~~~~a~-~~  332 (403)
                      .+.+|+++|+|||||||+++.|++.+....  ...+..        +.+++.+. .+.    ..... ...+..... +.
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~-~~~----~~~~~~~~~~~~~~~~~~   83 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLK-MEN----SMSNETIHLLFSANRWEH   83 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHT-TSS----CCCHHHHHHHHHHHHHTT
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHh-cCC----CCCHHHHHHHHHHHHHHH
Confidence            367999999999999999999998654211  111110        11232221 110    11111 111111000 11


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCC----HHHH----HHHHHHHhc-C-CcEEEEEECCh-HHHHHHHHHh
Q 015668          333 FDVLLSRASRTPRNFIIDQTNVF----KSAR----KRKLRLFVN-F-RKIAVVVFPKP-EDLKIRSVKR  390 (403)
Q Consensus       333 ~~~ll~~al~~g~~vIlD~Tn~~----~~~R----~~~~~~~~~-~-~~~~vv~l~~p-e~~~~R~~~R  390 (403)
                      ++ .+..++..+..||+|....+    ...+    ..++..+.. . ..-.+|++++| +++++|..+|
T Consensus        84 ~~-~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r  151 (212)
T 2wwf_A           84 MN-EIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYG  151 (212)
T ss_dssp             HH-HHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTT
T ss_pred             HH-HHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccC
Confidence            11 23344567889999975432    1122    123332222 1 23457888887 7888887655

>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.20  E-value=4.3e-05  Score=67.36  Aligned_cols=145  Identities=14%  Similarity=0.202  Sum_probs=97.8

Q ss_pred             CCCCCeEEcCCCceEEecC-CCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCC----
Q 015668           50 DCDLDFDIEDNGLKSSGLH-QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDD----  124 (403)
Q Consensus        50 d~~~~l~is~d~l~~~~~~-~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~~~~----  124 (403)
                      -+..++.|++|+.++.... ...  .+-+=+.++.++..|. .|+|+|.+...        .-.|.+++|+++.+-    
T Consensus        12 ~hG~nI~L~~~~~~A~R~~~~~~--f~~givFS~rPl~~~E-~~~v~I~~~~~--------~wsG~l~~GvT~~dP~~l~   80 (170)
T 2e63_A           12 RTGRLVSLSACGRTARRQQPGQE--FNHGLVLSREPLRDGR-VFTVRIDRKVN--------SWSGSIEIGVTALDPSVLD   80 (170)
T ss_dssp             CCCSSEEECSSSCEEEESCTTTC--SCSCCEEEEEEECTTC-EEEEEEEEECC--------SSCCCCEEEEESSCTTSCC
T ss_pred             ccCCCeEECCCCeEEEeCCCCcc--cCceEEEECCCCCCCC-EEEEEEEeecC--------CcceeEEEEEEccChhhcc
Confidence            4688999999999887642 112  3335577888898775 36777776521        135899999988541    


Q ss_pred             -CCCCCCCCCcceeEecCCceeeCCC--cccCCC---CCCCCCEEEEEEecCCCCCceEEEEeCcccccccccccCCCCC
Q 015668          125 -PVGKLGETEQSFGFGGTGKFSHGGN--FLNFGE---KFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNG  198 (403)
Q Consensus       125 -~~~~lG~d~~Sygy~~~G~~~~~~~--~~~yG~---~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg~af~~~~~~~~  198 (403)
                       |.....-...+|.+.+.+- .+++.  .+.||.   +...||+||..++-.    +.++|..||+.+|+++. ..    
T Consensus        81 lP~~~~~L~~~~Wv~~~~~v-~~ng~~~~e~~~~~l~~l~~Gd~ig~~~~~~----G~l~~~iNg~~~g~~~~-~i----  150 (170)
T 2e63_A           81 FPSSATGLKGGSWVVSGCSV-LRDGRSVLEEYGQDLDQLGEGDRVGVERTVA----GELRLWVNGRDCGVAAT-GL----  150 (170)
T ss_dssp             CCSSGGGCCSSEEEESSSEE-EESSCEEEESCSSCGGGCCSSCCEEEEECTT----SCEEEEESSCEEEEEEC-CC----
T ss_pred             CCCChhhCCCCeEEEecccc-ccCCcccchhccccccccCCCCEEEEEEcCC----cEEEEEECCccceeeEc-CC----
Confidence             2122222346788865222 22222  357886   578999999998854    69999999999999875 11    


Q ss_pred             CccccchhhcccCCCceEeEEEEeCeEEEE
Q 015668          199 LGVVDSAVKERQCESAVFPHILLKNVVVVM  228 (403)
Q Consensus       199 l~~~~~~~~g~~~~~~~fP~v~l~~~~v~~  228 (403)
                                   ..+||..|-+++....+
T Consensus       151 -------------p~~LwavvDvyG~t~~V  167 (170)
T 2e63_A          151 -------------PPRVWAVVDLYGKCTQI  167 (170)
T ss_dssp             -------------CSCEEEEEECCTTEEEE
T ss_pred             -------------CCcEEEEEEccCCEEEE
Confidence                         35789988888654443

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=98.19  E-value=1.1e-05  Score=73.86  Aligned_cols=121  Identities=18%  Similarity=0.096  Sum_probs=68.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc---------HHHHHHhhcCCCcccCCChHHHH---HHHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT---------NLILEQMKVPGLLRKHNYSERFQ---CLMGRANAIF  333 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~---------D~ir~~l~~~g~~~~~~~~~~~~---~~~~~a~~~~  333 (403)
                      ..+|++.|++||||||.++.+++.+...++-++.+         ..+++-+. .+..  ....+.-.   ....++. .+
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~-~~~~--~~~~~~~~~llf~a~R~~-~~   81 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLL-APSD--EPMAADTELLLMFAARAQ-HL   81 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHH-SCCS--SCCCHHHHHHHHHHHHHH-HH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHh-cCCC--CCCCHHHHHHHHHHHHHH-HH
Confidence            57899999999999999999988775432212211         12444332 2311  01111111   1122222 23


Q ss_pred             HHHHHHHhcCCCeEEEeCC------------CCCHHHHHHHHHHHh-cC-CcEEEEEECCh-HHHHHHHHHhc
Q 015668          334 DVLLSRASRTPRNFIIDQT------------NVFKSARKRKLRLFV-NF-RKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       334 ~~ll~~al~~g~~vIlD~T------------n~~~~~R~~~~~~~~-~~-~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      ...+.-++.+|..||.|--            .+..+.-.. +..+. +. .+-.++++++| +++++|..+|.
T Consensus        82 ~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~-l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~  153 (213)
T 4edh_A           82 AGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAA-LESFVQGDLRPDLTLVFDLPVEIGLARAAARG  153 (213)
T ss_dssp             HHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHH-HHHHHHTTCCCSEEEEEECCHHHHHHHHCCCS
T ss_pred             HHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHH-HHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            3455667789999999941            222221111 22222 22 25677899997 89999998884

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=98.15  E-value=9.9e-06  Score=77.08  Aligned_cols=39  Identities=15%  Similarity=0.265  Sum_probs=32.2

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~  306 (403)
                      ..+.+|.++|.|||||||+|+.|++ +.   +.+|++|.+..+
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~-lg---~~~id~D~~~~~  111 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN-LG---AYIIDSDHLGHR  111 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH-HT---CEEEEHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-CC---CcEEehhHHHHH
Confidence            3578999999999999999999994 43   678888987443

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.10  E-value=7.3e-06  Score=73.41  Aligned_cols=37  Identities=16%  Similarity=0.248  Sum_probs=31.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      .+|.++|.|||||||+++.++. +.   +.+++.|.+..++
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g---~~~i~~d~~~~~~   38 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LG---AYVLDADKLIHSF   38 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TT---CEEEEHHHHHHGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CC---CEEEEccHHHHHH
Confidence            4689999999999999999998 64   7788888875543

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=98.10  E-value=5.1e-07  Score=81.45  Aligned_cols=123  Identities=16%  Similarity=0.087  Sum_probs=65.6

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccE--EEec---------cHHHHHHhhcCCCcccCCChHHHHHHHHHHHHH-HHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLG---------TNLILEQMKVPGLLRKHNYSERFQCLMGRANAI-FDV  335 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~--v~ls---------~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~-~~~  335 (403)
                      +|+++|++||||||+++.|++.+...++  .++.         .|.++..+.  +........+....+.-.+.+. ...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~r~~~~~   79 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALH--GEHGDLASSVYAMATLFALDRAGAVH   79 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEE--EEEEEEEEEHHHHHHHHHHHHHEEHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHc--ccccccCCCHhHHHHHHHHHHhhhHH
Confidence            7899999999999999999987753222  1121         344554432  1100000011111111111110 012


Q ss_pred             HHHHHhcCCCeEEEeCCCCCH----HHH---------HHHHHHHh----cC-CcEEEEEECCh-HHHHHHHHHhcc
Q 015668          336 LLSRASRTPRNFIIDQTNVFK----SAR---------KRKLRLFV----NF-RKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       336 ll~~al~~g~~vIlD~Tn~~~----~~R---------~~~~~~~~----~~-~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      .+..++..+..||+|....+.    ..+         ..++..+.    .. ..-.++++++| +++++|+.+|..
T Consensus        80 ~i~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~  155 (214)
T 1gtv_A           80 TIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQ  155 (214)
T ss_dssp             HHHHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             HHHHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccc
Confidence            344456788999999865332    111         12333332    11 13457788887 899999999864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=98.05  E-value=9.7e-06  Score=72.18  Aligned_cols=38  Identities=21%  Similarity=0.168  Sum_probs=32.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~  306 (403)
                      .+.+|.++|.+||||||+++.|++. .   +.+++.|.+...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~-g---~~~id~d~~~~~   44 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW-G---YPVLDLDALAAR   44 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT-T---CCEEEHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC-C---CEEEcccHHHHH
Confidence            4689999999999999999999987 3   678888986533

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=98.05  E-value=2.5e-05  Score=72.55  Aligned_cols=122  Identities=12%  Similarity=0.061  Sum_probs=63.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccE--EEecc--------HHHHHHhhcCCCcccCCChHHHHH---HHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLGT--------NLILEQMKVPGLLRKHNYSERFQC---LMGRANAI  332 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~--v~ls~--------D~ir~~l~~~g~~~~~~~~~~~~~---~~~~a~~~  332 (403)
                      ..+|++.|++||||||.++.+++.+...++  +++..        ..+++.+.. +.. .....+.-+.   ...++ +.
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~-~~~-~~~~~~~~e~lLf~A~R~-~~  103 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKE-EHP-GEELQDITELLLVYAARV-QL  103 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHS-CCT-TSCCCHHHHHHHHHHHHH-HH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhh-CCC-cccCCHHHHHHHHHHHHH-HH
Confidence            679999999999999999999877643221  12211        234444321 110 0011121121   11222 12


Q ss_pred             HHHHHHHHhcCCCeEEEeC------------CCCCHHHHHHHHHHHh-cC-CcEEEEEECCh-HHHHHHHHHhc
Q 015668          333 FDVLLSRASRTPRNFIIDQ------------TNVFKSARKRKLRLFV-NF-RKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       333 ~~~ll~~al~~g~~vIlD~------------Tn~~~~~R~~~~~~~~-~~-~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      +...+.-++.+|..||.|-            ..+..+.-.. +..+. +. .+-.+++|++| +++++|..+|.
T Consensus       104 ~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~-l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~  176 (236)
T 3lv8_A          104 VENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQS-LKQTALGDFKPDLTLYLDIDPKLGLERARGRG  176 (236)
T ss_dssp             HHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHH-HHHHHHTTCCCSEEEEEECCHHHHHHC-----
T ss_pred             HHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHH-HHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            3345566788999999993            1222221111 22222 22 25567889887 89999998885

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=98.04  E-value=1.2e-05  Score=72.33  Aligned_cols=40  Identities=18%  Similarity=0.129  Sum_probs=33.4

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~  306 (403)
                      ..-.+|.++|.+||||||+++.|++.+.   +.+++.|.+..+
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~lg---~~vid~D~~~~~   49 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNKYG---AHVVNVDRIGHE   49 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcC---CEEEECcHHHHH
Confidence            3467899999999999999999998754   788999987433

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.02  E-value=4.5e-05  Score=67.69  Aligned_cols=24  Identities=21%  Similarity=0.273  Sum_probs=22.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +|+++|+|||||||+++.|++.+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999999876

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.02  E-value=3.1e-05  Score=75.52  Aligned_cols=35  Identities=11%  Similarity=0.372  Sum_probs=31.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i  303 (403)
                      ..+|+++|++||||||+|..|++.++   ..+||.|.+
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l~---~eiIs~Ds~   74 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHFP---LEVINSDKM   74 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTSC---EEEEECCSS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHCC---CcEEccccc
Confidence            46999999999999999999999997   688999974

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.99  E-value=1.7e-05  Score=71.07  Aligned_cols=26  Identities=23%  Similarity=0.475  Sum_probs=23.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      +.|+++|++||||||++++|.+.++.
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~~~   27 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEYPD   27 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            46899999999999999999988763

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=97.99  E-value=5e-05  Score=69.40  Aligned_cols=122  Identities=15%  Similarity=0.082  Sum_probs=67.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccE--EEecc--------HHHHHHhhcCCCcccCCChHHHHHHHHHHH--HHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLGT--------NLILEQMKVPGLLRKHNYSERFQCLMGRAN--AIF  333 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~--v~ls~--------D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~--~~~  333 (403)
                      ..+|++.|++||||||.++.+.+.+...++  +++..        ..+|+-+............+.-+.+.=.|.  +.+
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~   82 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLV   82 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHH
Confidence            368999999999999999999887653322  22211        124444431110000111222122111111  123


Q ss_pred             HHHHHHHhcCCCeEEEeCC------------CCCHHHHHHHHHHHh----cC-CcEEEEEECCh-HHHHHHHHHhc
Q 015668          334 DVLLSRASRTPRNFIIDQT------------NVFKSARKRKLRLFV----NF-RKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       334 ~~ll~~al~~g~~vIlD~T------------n~~~~~R~~~~~~~~----~~-~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      ...+.-++.+|..||.|--            .+..    .|+..+.    +. .+-.++++++| +++++|..+|.
T Consensus        83 ~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~----~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~  154 (213)
T 4tmk_A           83 ETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQ----HMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARG  154 (213)
T ss_dssp             HHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCH----HHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCH----HHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            3455667899999999951            1212    2333332    21 25567899997 89999999984

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.99  E-value=6.9e-06  Score=76.61  Aligned_cols=40  Identities=20%  Similarity=0.233  Sum_probs=32.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCc-------cEEEeccHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK-------RYILLGTNLIL  304 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~-------~~v~ls~D~ir  304 (403)
                      .+.+|.++|.|||||||+|+.|++.+...       ...+++.|.+.
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~   67 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY   67 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence            46899999999999999999999977621       24578888754

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.96  E-value=4.4e-05  Score=69.15  Aligned_cols=38  Identities=21%  Similarity=0.294  Sum_probs=31.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      +.+|.++|.+||||||+++.|++ +.   +.++++|.+...+
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~-lg---~~~id~D~~~~~~   41 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD-LG---INVIDADIIARQV   41 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH-TT---CEEEEHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH-cC---CEEEEccHHHHHH
Confidence            57899999999999999999987 54   6788888775543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.94  E-value=7.3e-06  Score=74.23  Aligned_cols=27  Identities=26%  Similarity=0.271  Sum_probs=24.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..++|+++|++||||||+++.|+..++
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            467999999999999999999998875

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=97.91  E-value=0.00017  Score=65.36  Aligned_cols=120  Identities=13%  Similarity=0.087  Sum_probs=64.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEec-----c---HHHHHHhhcCCCcccCCChHHHHHH---HHHHHHHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG-----T---NLILEQMKVPGLLRKHNYSERFQCL---MGRANAIFDV  335 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls-----~---D~ir~~l~~~g~~~~~~~~~~~~~~---~~~a~~~~~~  335 (403)
                      .+|.+-|+.||||||.++.|++.+....-+++.     +   +.+|+.+. .+.    ...+..+.+   ..++. .+..
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~-~~~----~~~~~~~~lLf~a~R~~-~~~~   76 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVL-EGN----DMDIRTEAMLFAASRRE-HLVL   76 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHH-SSC----CCCHHHHHHHHHHHHHH-HHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHh-ccc----CCCHHHHHHHHHHHHHH-HHHH
Confidence            578999999999999999998877432112221     1   23454443 221    111221211   11221 2334


Q ss_pred             HHHHHhcCCCeEEEeCC------------CCCHHHHHHHHHHHhcC-CcEEEEEECCh-HHHHHHHHHhcc
Q 015668          336 LLSRASRTPRNFIIDQT------------NVFKSARKRKLRLFVNF-RKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       336 ll~~al~~g~~vIlD~T------------n~~~~~R~~~~~~~~~~-~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      .+.-++.+|..||.|--            .+..+.-..+.+.+.+. .+=.+++++.| +++++|..+|..
T Consensus        77 ~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~  147 (205)
T 4hlc_A           77 KVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSR  147 (205)
T ss_dssp             THHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC---
T ss_pred             HHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCC
Confidence            45567899999999941            12222111111111121 24467789886 899999988754

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.91  E-value=4.2e-05  Score=68.59  Aligned_cols=36  Identities=22%  Similarity=0.272  Sum_probs=30.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~  306 (403)
                      .+|.++|+|||||||+++.++. +.   +.+++.|.+...
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg---~~~id~d~~~~~   38 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LG---VPLVDADVVARE   38 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TT---CCEEEHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CC---CcccchHHHHHH
Confidence            5789999999999999999987 54   677888887544

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.90  E-value=3.1e-05  Score=72.60  Aligned_cols=110  Identities=17%  Similarity=0.159  Sum_probs=61.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcC-C
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT-P  344 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~-g  344 (403)
                      .+.|+++|+|||||||+++.++..+.   +.++++|.+.+... .|..-..-+...-+......   ..+.+..++.. .
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg---~~~~d~d~~~~~~~-~g~~i~~i~~~~ge~~fr~~---e~~~l~~l~~~~~  120 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLG---YTFFDCDTLIEQAM-KGTSVAEIFEHFGESVFREK---ETEALKKLSLMYH  120 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHT---CEEEEHHHHHHHHS-TTSCHHHHHHHHCHHHHHHH---HHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcC---CcEEeCcHHHHHHh-cCccHHHHHHHhCcHHHHHH---HHHHHHHHHhhcC
Confidence            46799999999999999999999886   77888888766542 12110000000001111111   11222222333 3


Q ss_pred             CeEEEeC--CCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHH
Q 015668          345 RNFIIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK  389 (403)
Q Consensus       345 ~~vIlD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~  389 (403)
                      ..||.+.  +-.....+.    .+..   -.+||++++ +++.+|..+
T Consensus       121 ~~Via~GgG~v~~~~~~~----~l~~---~~vV~L~a~~e~l~~Rl~~  161 (250)
T 3nwj_A          121 QVVVSTGGGAVIRPINWK----YMHK---GISIWLDVPLEALAHRIAA  161 (250)
T ss_dssp             SEEEECCGGGGGSHHHHH----HHTT---SEEEEEECCHHHHHHHHHC
T ss_pred             CcEEecCCCeecCHHHHH----HHhC---CcEEEEECCHHHHHHHHhh
Confidence            4455443  333343333    2332   357899887 899999875

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.87  E-value=8.1e-05  Score=66.23  Aligned_cols=26  Identities=31%  Similarity=0.432  Sum_probs=23.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +.+|+++|+|||||||+++.|++.+.
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l~   29 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESIP   29 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHC
Confidence            56899999999999999999999873

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=97.80  E-value=8.9e-06  Score=76.26  Aligned_cols=34  Identities=15%  Similarity=0.199  Sum_probs=28.2

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls  299 (403)
                      ..+.+|++.|++||||||+++.|++.+..  +.++.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~--~~~i~   55 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCED--WEVVP   55 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCTT--EEEEC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcCC--CEEEe
Confidence            45789999999999999999999999854  55553

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.80  E-value=7.4e-05  Score=66.55  Aligned_cols=27  Identities=19%  Similarity=0.331  Sum_probs=24.2

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++.++|++||||||+++.++..++
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            357899999999999999999998875

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.79  E-value=4.9e-05  Score=70.35  Aligned_cols=36  Identities=22%  Similarity=0.306  Sum_probs=29.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir  304 (403)
                      +++|+++|+|||||||+++.+++.+.   ...++.+.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg---~~~~~~G~i~   62 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFG---LQHLSSGHFL   62 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHC---CCCEEHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC---CeEecHHHHH
Confidence            68999999999999999999998775   4455555543

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.79  E-value=3e-05  Score=71.66  Aligned_cols=123  Identities=15%  Similarity=0.130  Sum_probs=63.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCc----c--EEEec----c---HHHHHHhhcCCCcccCCChHHHHHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK----R--YILLG----T---NLILEQMKVPGLLRKHNYSERFQCLMGRANA  331 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~----~--~v~ls----~---D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~  331 (403)
                      ...+|++.|++||||||.++.+++.+...    +  ++.+.    +   ..+++-+. .+...  ......-....++. 
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~-~~~~~--~~~~~llf~a~R~~-   99 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILL-NQPMD--LETEALLMFAGRRE-   99 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHH-HSCCC--HHHHHHHHHHHHHH-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHH-cCCCC--HHHHHHHHHHHHHH-
Confidence            46799999999999999999998877532    1  22221    1   12444332 22110  00000011112221 


Q ss_pred             HHHHHHHHHhcCCCeEEEeCC------------CCCHHHHHHHHHHHhcC-CcEEEEEECCh-HHHHHHHHHhc
Q 015668          332 IFDVLLSRASRTPRNFIIDQT------------NVFKSARKRKLRLFVNF-RKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       332 ~~~~ll~~al~~g~~vIlD~T------------n~~~~~R~~~~~~~~~~-~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      .+...+.-++.+|..||.|--            .+..+.-..+.+.+.+. .+-.+++++.| +++++|..+|.
T Consensus       100 ~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~  173 (227)
T 3v9p_A          100 HLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVR  173 (227)
T ss_dssp             HHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCC
T ss_pred             HHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence            223445567789999999931            22222222111111222 25677899987 88999988874

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=97.67  E-value=0.0003  Score=64.10  Aligned_cols=40  Identities=28%  Similarity=0.309  Sum_probs=33.2

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      ..+-.|-|+|.+||||||+++.+.+ +.   +.+++.|.+..++
T Consensus         7 ~~~~~iglTGgigsGKStv~~~l~~-~g---~~vidaD~ia~~l   46 (210)
T 4i1u_A            7 HHMYAIGLTGGIGSGKTTVADLFAA-RG---ASLVDTDLIAHRI   46 (210)
T ss_dssp             CSCCEEEEECCTTSCHHHHHHHHHH-TT---CEEEEHHHHHHHH
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHH-CC---CcEEECcHHHHHH
Confidence            3467889999999999999999987 54   7889999875554

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=97.64  E-value=0.0002  Score=64.60  Aligned_cols=114  Identities=11%  Similarity=0.049  Sum_probs=60.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccC--CChHHHH-HH-------------HHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKH--NYSERFQ-CL-------------MGRAN  330 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~--~~~~~~~-~~-------------~~~a~  330 (403)
                      .+|.+.|++||||||+++.|++.+.   +..++.+.+++.....|.....  .+..... ..             .+...
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg---~~~~D~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYN---IPLYSKELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIA   83 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTT---CCEECHHHHHHTTCC---------------------------------CHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhC---cCEECHHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence            5899999999999999999999997   6777744443321123321110  0000000 00             00011


Q ss_pred             HHHHHHHHHHhc-CCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          331 AIFDVLLSRASR-TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       331 ~~~~~ll~~al~-~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      ....+++..+.. ...++|++.+-..      ++  +.+......||+.++ +++.+|..+|.
T Consensus        84 ~~~~~~i~~la~~~~~~~Vi~Gr~g~------~v--l~~~~~~~~V~L~A~~e~r~~R~~~~~  138 (201)
T 3fdi_A           84 IRQFNFIRKKANEEKESFVIVGRCAE------EI--LSDNPNMISAFILGDKDTKTKRVMERE  138 (201)
T ss_dssp             HHHHHHHHHHHHTSCCCEEEESTTHH------HH--TTTCTTEEEEEEEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCEEEEECCcc------hh--cCCCCCeEEEEEECCHHHHHHHHHHHh
Confidence            122333333331 4557888876321      12  333224566788886 88999987763

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=97.63  E-value=0.00047  Score=61.97  Aligned_cols=119  Identities=13%  Similarity=0.065  Sum_probs=59.9

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCcc--EEEec----c---HHHHHHhhcCCCcccCCChHHHHHHHHHH-HHHHHHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKR--YILLG----T---NLILEQMKVPGLLRKHNYSERFQCLMGRA-NAIFDVLL  337 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~--~v~ls----~---D~ir~~l~~~g~~~~~~~~~~~~~~~~~a-~~~~~~ll  337 (403)
                      +|++-|+.||||||.++.|++.+...+  ++...    +   ..+++.+. ..     ...+....+.-.+ .......+
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~-~~-----~~~~~~~~ll~~a~r~~~~~~I   75 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILL-EE-----EVTPKAELFLFLASRNLLVTEI   75 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHH-HS-----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhh-cc-----cCChHHHHHHHHHHHHHHHHHH
Confidence            578889999999999999887664322  22221    1   23344332 11     1112111111111 11122345


Q ss_pred             HHHhcCCCeEEEeCCCCCHHHH--------HHHHHHH---h-c-CCcEEEEEECCh-HHHHHHHHHhcc
Q 015668          338 SRASRTPRNFIIDQTNVFKSAR--------KRKLRLF---V-N-FRKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       338 ~~al~~g~~vIlD~Tn~~~~~R--------~~~~~~~---~-~-~~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      .-++.+|..||.|--..+.-+.        ..++..+   . . ..+-.+++++.| +++++|..+|++
T Consensus        76 ~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr  144 (197)
T 3hjn_A           76 KQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNR  144 (197)
T ss_dssp             HHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CT
T ss_pred             HHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCc
Confidence            5678999999999521111111        1122222   2 1 224566788886 888888766654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.58  E-value=0.00012  Score=65.25  Aligned_cols=25  Identities=20%  Similarity=0.296  Sum_probs=23.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .++|+++|+|||||||+++.++..+
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            5789999999999999999999877

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=97.58  E-value=0.00045  Score=63.43  Aligned_cols=43  Identities=7%  Similarity=0.037  Sum_probs=34.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPG  311 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g  311 (403)
                      ..+|.+.|.+||||||+|+.|++.+.   +.+++.|.+++.....|
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg---~~~~d~~~~~~~a~~~g   56 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELG---IHFYDDDILKLASEKSA   56 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHT---CEEECHHHHHHHHHCC-
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcC---CcEEcHHHHHHHHHHcC
Confidence            46899999999999999999999886   77888877665443344

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.56  E-value=0.00013  Score=66.79  Aligned_cols=119  Identities=13%  Similarity=0.144  Sum_probs=64.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC---ccEEEeccHHHHHHhhcCCCcccCCCh--HHHHHHHH------HH---H
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE---KRYILLGTNLILEQMKVPGLLRKHNYS--ERFQCLMG------RA---N  330 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~---~~~v~ls~D~ir~~l~~~g~~~~~~~~--~~~~~~~~------~a---~  330 (403)
                      ..++++++|++||||||+.+.+....+.   ...+.+.+-..+... ..|.  .+.+.  ..+.....      .+   .
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e-~~gi--~y~fq~~~~f~~~~~~~~f~E~~~~~~   91 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGE-VHGE--HYFFVNHDEFKEMISRDAFLEHAEVFG   91 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTC-CBTT--TBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCccc-ccCc--eEEECCHHHHHHHHhcCHHHHHHHHHh
Confidence            4689999999999999999999987762   111112111001000 0010  01111  11111110      00   0


Q ss_pred             H---HHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECC-hHHHHHHHHHhc
Q 015668          331 A---IFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK-PEDLKIRSVKRF  391 (403)
Q Consensus       331 ~---~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~-pe~~~~R~~~R~  391 (403)
                      .   .-...++.++..|+.+|+|   +.+..++.+++.+.  ..+.+++++. .+++.+|+..|.
T Consensus        92 ~~yg~~~~~v~~~l~~G~illLD---LD~~~~~~i~~~l~--~~~tI~i~th~~~~l~~Rl~~rG  151 (219)
T 1s96_A           92 NYYGTSREAIEQVLATGVDVFLD---IDWQGAQQIRQKMP--HARSIFILPPSKIELDRRLRGRG  151 (219)
T ss_dssp             EEEEEEHHHHHHHHTTTCEEEEE---CCHHHHHHHHHHCT--TCEEEEEECSSHHHHHHHHHTTS
T ss_pred             ccCCCCHHHHHHHHhcCCeEEEE---ECHHHHHHHHHHcc--CCEEEEEECCCHHHHHHHHHHcC
Confidence            0   0012344566889999999   88888877666655  2455555544 478888886654

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=97.55  E-value=0.00019  Score=66.09  Aligned_cols=121  Identities=11%  Similarity=0.062  Sum_probs=58.3

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCC-c--cEEE-e-cc------HHHHHHhhcCCCcccCCChHHHHH---HHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE-K--RYIL-L-GT------NLILEQMKVPGLLRKHNYSERFQC---LMGRA  329 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~-~--~~v~-l-s~------D~ir~~l~~~g~~~~~~~~~~~~~---~~~~a  329 (403)
                      ....+|++.|++||||||.++.+.+.+.. .  ..+. . ..      +.+|+-+....   .  .....+.   ...++
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~---~--~~~~~e~llf~a~R~   93 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQ---G--LDSLSELLFFIAMRR   93 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCS---S--CCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCC---C--CCHHHHHHHHHHHHH
Confidence            34789999999999999999999887653 1  1222 1 11      12444432111   1  2222221   12222


Q ss_pred             HHHHHHHHHHHhcCCCeEEEeCCCC----CHH-HH---HHHHHHHh----cCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          330 NAIFDVLLSRASRTPRNFIIDQTNV----FKS-AR---KRKLRLFV----NFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       330 ~~~~~~ll~~al~~g~~vIlD~Tn~----~~~-~R---~~~~~~~~----~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      . .+.+.+.-++.+|..||.|--..    +.. .|   ..|++.+.    +..+=.+++++.| +++++|. +|.
T Consensus        94 ~-~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~rd  166 (223)
T 3ld9_A           94 E-HFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CKN  166 (223)
T ss_dssp             H-HHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC------------
T ss_pred             H-HHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-ccC
Confidence            2 23344556788999999996211    110 00   11233221    1124466788886 8888887 443

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.51  E-value=6.8e-05  Score=66.10  Aligned_cols=26  Identities=15%  Similarity=0.463  Sum_probs=23.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      .++++++|++||||||+++.+...++
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            47899999999999999999998765

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.38  E-value=0.00025  Score=65.28  Aligned_cols=27  Identities=30%  Similarity=0.345  Sum_probs=24.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      +.+|++.|++||||||+++.|++.+++
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~   28 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            578999999999999999999999853

>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}

Probab=97.18  E-value=0.0028  Score=55.55  Aligned_cols=135  Identities=11%  Similarity=0.089  Sum_probs=84.9

Q ss_pred             CCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCCCC-CC
Q 015668           50 DCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPV-GK  128 (403)
Q Consensus        50 d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s~~~~~~-~~  128 (403)
                      .+..++.|+.|+.+++...  .  .+-+=+.++.++..|.- |+|+|.+...        .-.|.++||+++.+ |. ..
T Consensus        14 ~~G~nI~L~~~~~~A~R~~--s--f~~givFS~RPl~~~E~-~~v~I~~~~~--------~wsG~l~~GvT~~d-P~~l~   79 (168)
T 2yue_A           14 VHGDNIRISRDGTLARRFE--S--FCRAITFSARPVRINER-ICVKFAEISN--------NWNGGIRFGFTSND-PVTLE   79 (168)
T ss_dssp             EECTTEEECCSSCCEEECS--C--SSCCEEEESSCCCSSCC-EEEEEEECCS--------SSSSCCEEEEESSC-GGGTT
T ss_pred             ccCCCeEECCCCcEEEecc--c--CCceEEEECCCCcCCCE-EEEEEEeecC--------CcceeEEEeeeecC-HHHcC
Confidence            5688999999999887642  2  33456788888887643 6778776421        13588999999865 31 11


Q ss_pred             CCCCCcceeEe----cCCceeeCCCcccCCCCCCCCCEEEEEEecCCCCCceEEEEeCcccccccccccCCCCCCccccc
Q 015668          129 LGETEQSFGFG----GTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDS  204 (403)
Q Consensus       129 lG~d~~Sygy~----~~G~~~~~~~~~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~lg~af~~~~~~~~l~~~~~  204 (403)
                      .  +--+|+..    ..+-+. .....+|+   ..||+|+..++-.    ++++|..||+..|.+++.   +        
T Consensus        80 ~--~lP~~a~~dL~~~~~~W~-~~l~~~~~---~~g~~l~f~v~~~----G~l~~~iNg~~~g~~~~~---V--------  138 (168)
T 2yue_A           80 G--TLPKYACPDLTNRPGFWA-KALHEQYC---EKDNILYYYVNGA----GDVIYGINNEEKGVILTG---I--------  138 (168)
T ss_dssp             T--CCCSSSSSHHHHSTTBCC-EECCSTTC---CSSCEEEEEECTT----SEEEEEESSCEEEEEEEC---C--------
T ss_pred             C--CCCCcCchHHhcCCCEEE-EEeccccc---cCCCEEEEEEcCC----CEEEEEECCCccEEEEcC---C--------
Confidence            1  11122210    111111 01122343   6799999999844    699999999999998751   1        


Q ss_pred             hhhcccCCCceEeEEEEeCe
Q 015668          205 AVKERQCESAVFPHILLKNV  224 (403)
Q Consensus       205 ~~~g~~~~~~~fP~v~l~~~  224 (403)
                      |     ...+||.-|-+++.
T Consensus       139 ~-----~~~pLwavvDvyG~  153 (168)
T 2yue_A          139 D-----TRSLLWTVIDIYGN  153 (168)
T ss_dssp             C-----CSSCCEEEEECCSS
T ss_pred             C-----CCCceEEEEEccCC
Confidence            1     14578888888743

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.14  E-value=0.00026  Score=64.06  Aligned_cols=37  Identities=22%  Similarity=0.326  Sum_probs=31.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE  305 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~  305 (403)
                      ..+|.++|+|||||||+++.++..+.   +.++++|.+..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g---~~~~d~g~i~~   41 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQ---WHLLDSGAIYR   41 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC---CCcccCcceee
Confidence            35799999999999999999998765   67788887654

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=97.11  E-value=0.00044  Score=63.23  Aligned_cols=117  Identities=15%  Similarity=0.089  Sum_probs=62.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEec-c--H-----HHHHHhhcCCCcccCCChHHHHH---HHHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG-T--N-----LILEQMKVPGLLRKHNYSERFQC---LMGRANAIFD  334 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls-~--D-----~ir~~l~~~g~~~~~~~~~~~~~---~~~~a~~~~~  334 (403)
                      ..+|++.|++||||||.++.+.+.+... ...+. .  +     .+++-+. ...   ....+.-..   ...++.  ..
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~~l~~~-~~~~~ep~~~t~~g~~ir~~l~-~~~---~~~~~~~~~llf~a~R~~--~~   77 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKLQPN-CKLLKFPERSTRIGGLINEYLT-DDS---FQLSDQAIHLLFSANRWE--IV   77 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHHCSS-EEEEESSCTTSHHHHHHHHHHH-CTT---SCCCHHHHHHHHHHHHHT--TH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhccc-ceEEEecCCCChHHHHHHHHHH-hcc---cCCCHHHHHHHHHHHHHH--HH
Confidence            5789999999999999999999988742 22221 1  1     1343332 111   011111111   112221  12


Q ss_pred             HHHHHHhcCCCeEEEeCCC----CCHHHH------HHHHHHHhcCC--cEEEEEE-CCh-HHHHHHHHH
Q 015668          335 VLLSRASRTPRNFIIDQTN----VFKSAR------KRKLRLFVNFR--KIAVVVF-PKP-EDLKIRSVK  389 (403)
Q Consensus       335 ~ll~~al~~g~~vIlD~Tn----~~~~~R------~~~~~~~~~~~--~~~vv~l-~~p-e~~~~R~~~  389 (403)
                      +.+.-++.+|..||.|--.    ++...+      -.|+..+....  +=.++++ +.| +++++|..+
T Consensus        78 ~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~  146 (216)
T 3tmk_A           78 DKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGF  146 (216)
T ss_dssp             HHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSS
T ss_pred             HHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhcc
Confidence            3455677899999999622    221111      12333332222  4467788 987 778777543

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=97.10  E-value=0.0028  Score=57.20  Aligned_cols=117  Identities=17%  Similarity=0.136  Sum_probs=62.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc-HHHHHHh-hcCCCcc-----cCCChHHHHHHHHHHHHHHHHH--
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQM-KVPGLLR-----KHNYSERFQCLMGRANAIFDVL--  336 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~-D~ir~~l-~~~g~~~-----~~~~~~~~~~~~~~a~~~~~~l--  336 (403)
                      ..+|+++|.|||||+|.|..+.+.+....+.+++. |.++++. ...|...     ...|...+...+....+.++..  
T Consensus        11 ~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d~   90 (202)
T 3ch4_B           11 RLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP   90 (202)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHCT
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcCc
Confidence            57999999999999999999987553222555555 5566433 2234321     1112222222222111111111  


Q ss_pred             ---HHHHhc--CCCeEEEeCCCCCHHHHHHHHHHHhc-CC-cEEEEEECCh-HHHHHHH
Q 015668          337 ---LSRASR--TPRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIRS  387 (403)
Q Consensus       337 ---l~~al~--~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~-~~~vv~l~~p-e~~~~R~  387 (403)
                         +..++.  ...++|||..=-     ..-++.|++ ++ .+.+|.+.++ +...+|.
T Consensus        91 ~~~~~~~~~~~~~~~vII~dvR~-----~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg  144 (202)
T 3ch4_B           91 GFFCRKIVEGISQPIWLVSDTRR-----VSDIQWFREAYGAVTQTVRVVALEQSRQQRG  144 (202)
T ss_dssp             TTTHHHHSBTCCCSEEEECCCCS-----HHHHHHHHHHHGGGEEEEEEEECHHHHHHTT
T ss_pred             hHHHHHHHHhcCCCcEEEeCCCC-----HHHHHHHHHhCCCcEEEEEEECCHHHHHHHh
Confidence               222222  234799998632     223555665 33 5778888886 6777774

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.07  E-value=0.00028  Score=62.79  Aligned_cols=37  Identities=22%  Similarity=0.280  Sum_probs=31.9

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      +|.++|.+||||||+++.|++.++   +.+++.|.+...+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg---~~~~d~d~~~~~~   40 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG---VPYLSSGLLYRAA   40 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC---CceeccchHHHhh
Confidence            789999999999999999999876   6788889876543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.05  E-value=0.00047  Score=61.72  Aligned_cols=38  Identities=24%  Similarity=0.340  Sum_probs=32.1

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i  303 (403)
                      ....+|.++|.|||||||+++.++..++.  +.+++.|.+
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~--~~~i~~D~~   56 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKHLPN--CSVISQDDF   56 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSTT--EEEEEGGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCC--cEEEeCCcc
Confidence            44689999999999999999999987732  778888865

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.05  E-value=0.0011  Score=57.81  Aligned_cols=94  Identities=15%  Similarity=0.132  Sum_probs=53.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR  342 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~  342 (403)
                      .+.++++|+||+||||+++.++..+.   +...+.++..++.+.+...  ......    .           .++ ..+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~----~-----------~~~-~~~~   99 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHL--MDEGKD----T-----------KFL-KTVL   99 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHH--HHHTCC----S-----------HHH-HHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH--hcCchH----H-----------HHH-HHhc
Confidence            57899999999999999999987653   2224455555555443210  000000    0           111 1124


Q ss_pred             CCCeEEEeCCC---CCHHHHHHHHHHHhcC--CcEEEEEE
Q 015668          343 TPRNFIIDQTN---VFKSARKRKLRLFVNF--RKIAVVVF  377 (403)
Q Consensus       343 ~g~~vIlD~Tn---~~~~~R~~~~~~~~~~--~~~~vv~l  377 (403)
                      +...+|+|...   ..+..+..+.+.+...  ....+++.
T Consensus       100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~t  139 (180)
T 3ec2_A          100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIIT  139 (180)
T ss_dssp             TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence            67899999853   5566666555555432  23444444

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.03  E-value=0.00038  Score=64.44  Aligned_cols=40  Identities=15%  Similarity=0.147  Sum_probs=33.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      .+.+|.+.|+|||||||+++.+++.+.   +.+++.|.+...+
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg---~~~~d~g~~~r~~   47 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALG---ARYLDTGAMYRIA   47 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC---CCcccCCcHHHHH
Confidence            357899999999999999999999876   7789888875443

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.02  E-value=0.00033  Score=67.91  Aligned_cols=35  Identities=23%  Similarity=0.317  Sum_probs=31.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i  303 (403)
                      +.+|+++|++||||||+|..|++.++   ..+|+.|.+
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~---~~iis~Ds~   39 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALP---CELISVDSA   39 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSC---EEEEEECTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC---CcEEeccch
Confidence            36899999999999999999999987   788888864

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.94  E-value=0.00097  Score=60.07  Aligned_cols=27  Identities=11%  Similarity=0.426  Sum_probs=24.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..++|+++|++||||||+++.|.+.++
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            468999999999999999999998875

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.92  E-value=0.0039  Score=53.62  Aligned_cols=25  Identities=24%  Similarity=0.322  Sum_probs=22.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ...++++|.||+||||+|+.+++.+
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4668899999999999999998875

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.80  E-value=0.00048  Score=62.88  Aligned_cols=26  Identities=27%  Similarity=0.336  Sum_probs=17.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHH-HhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWV-KDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~-~~~  290 (403)
                      ..+++.++|++||||||+++.++ ..+
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            35799999999999999999999 655

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.80  E-value=0.00072  Score=61.87  Aligned_cols=36  Identities=25%  Similarity=0.261  Sum_probs=27.5

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D  301 (403)
                      ....+|.+.|+.||||||+++.++.. . ..+.+...+
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~-g~v~~~~~~   53 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY-K-NDICLLTEP   53 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG-T-TTEEEECCT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc-c-CCeEEEecC
Confidence            45789999999999999999999876 2 224444443

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.80  E-value=0.0008  Score=65.68  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=31.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i  303 (403)
                      .+|+++|++||||||+|..|++.++   ..+|+.|.+
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~---~~iis~Ds~   41 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN---GEIISGDSM   41 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT---EEEEECCSS
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC---Cceeccccc
Confidence            5899999999999999999999987   688998875

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.79  E-value=0.00087  Score=61.46  Aligned_cols=40  Identities=25%  Similarity=0.284  Sum_probs=33.7

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~  306 (403)
                      ....+|.++|.|||||||+++.++..+.   +.+++.|.+...
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg---~~~~d~d~~~~~   53 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFG---FTYLDTGAMYRA   53 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHC---CEEEEHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcC---CceecCCCeeEc
Confidence            4467899999999999999999998775   678888887644

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.78  E-value=0.00087  Score=60.33  Aligned_cols=38  Identities=21%  Similarity=0.288  Sum_probs=32.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~  306 (403)
                      +.+|.++|.|||||||+++.+++.+.   +.+++.|.+...
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g---~~~~~~d~~~~~   40 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELS---MIYVDTGAMYRA   40 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT---CEEEEHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC---CceecCChHHHH
Confidence            35789999999999999999999886   678888887543

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.76  E-value=0.0011  Score=61.55  Aligned_cols=38  Identities=21%  Similarity=0.298  Sum_probs=32.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~  306 (403)
                      ..+|.++|++||||||+++.+++.+.   +..++++.+...
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg---~~~~d~g~i~r~   64 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLN---WRLLDSGAIYRV   64 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTT---CEEEEHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC---CCcCCCCceehH
Confidence            57899999999999999999999886   677888877633

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.70  E-value=0.0028  Score=60.32  Aligned_cols=40  Identities=15%  Similarity=0.068  Sum_probs=32.0

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir  304 (403)
                      +.+..+++.|+||+|||++|+.+++++.. .++.++...+.
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~-~~i~v~~~~l~   73 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKMGI-NPIMMSAGELE   73 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHHTC-CCEEEEHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCC-CEEEEeHHHhh
Confidence            44678899999999999999999998753 46777665544

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.70  E-value=0.0012  Score=63.55  Aligned_cols=35  Identities=29%  Similarity=0.294  Sum_probs=31.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      .+.+|+++|++||||||+|..+++.++   ..+||.|.
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~---~~iis~Ds   43 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILP---VELISVDS   43 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSC---EEEEECCT
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCC---CcEEeccc
Confidence            467999999999999999999999987   67888885

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.64  E-value=0.0038  Score=53.67  Aligned_cols=25  Identities=24%  Similarity=0.263  Sum_probs=22.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ...++++|.||+||||+|+.+++.+
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999998875

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.56  E-value=0.01  Score=56.37  Aligned_cols=42  Identities=19%  Similarity=0.295  Sum_probs=33.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      .+..|+++|+||+||||+|+.++.... ..++.++...+...+
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~~-~~~i~v~~~~l~~~~   89 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANECQ-ANFISIKGPELLTMW   89 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHTT-CEEEEECHHHHHHHH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHhC-CCEEEEEhHHHHhhh
Confidence            356789999999999999999999886 346777766665543

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.53  E-value=0.0015  Score=63.04  Aligned_cols=35  Identities=20%  Similarity=0.179  Sum_probs=31.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i  303 (403)
                      ..+|+++|++||||||+|..+++.++   ..+||.|.+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~---~~iis~Ds~   37 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLN---GEVISGDSM   37 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTT---EEEEECCGG
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCc---cceeecCcc
Confidence            46899999999999999999999987   688898863

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.51  E-value=0.0035  Score=60.22  Aligned_cols=39  Identities=31%  Similarity=0.337  Sum_probs=30.3

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL  302 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~  302 (403)
                      ..+++|+++|++||||||++..++..+.  .+...+++.|.
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~  142 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT  142 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence            4579999999999999999999986543  23466677664

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.46  E-value=0.0065  Score=57.37  Aligned_cols=38  Identities=24%  Similarity=0.161  Sum_probs=27.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC------CccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP------EKRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~------~~~~v~ls~D~  302 (403)
                      ...-++++|+||+||||+|+.+++.+.      ...++.++...
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  109 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD  109 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence            345689999999999999998877652      11366676554

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.41  E-value=0.0023  Score=57.16  Aligned_cols=40  Identities=23%  Similarity=0.152  Sum_probs=30.1

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI  303 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~i  303 (403)
                      ..+.+|.++|.+||||||+++.+...++  ...+++++.|.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~   61 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH   61 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence            3468999999999999999999987542  122566667753

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.37  E-value=0.0059  Score=58.41  Aligned_cols=40  Identities=15%  Similarity=0.158  Sum_probs=29.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILE  305 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir~  305 (403)
                      ...++++|+||+||||+|+.++..+.  ...++.++...+..
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~   78 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ   78 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
Confidence            45688999999999999999987652  22367777665443

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.25  E-value=0.02  Score=55.78  Aligned_cols=104  Identities=11%  Similarity=0.142  Sum_probs=55.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH----HHHHHhhc--CCCc----cc-CCChHHHHHHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN----LILEQMKV--PGLL----RK-HNYSERFQCLMGRANAI  332 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D----~ir~~l~~--~g~~----~~-~~~~~~~~~~~~~a~~~  332 (403)
                      ..++++.|.||+||||||..++....  ...+.++|.+    .+..++..  .+..    +. .-....|+.+...+   
T Consensus        46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~---  122 (338)
T 4a1f_A           46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCF---  122 (338)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHH---
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHH---
Confidence            58999999999999999988875421  2335667664    34444321  1110    00 00112233222111   


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEEC
Q 015668          333 FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFP  378 (403)
Q Consensus       333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~  378 (403)
                           .. +.....+|.|..+++...-+..++.++..+ .+.+|+++
T Consensus       123 -----~~-l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVID  163 (338)
T 4a1f_A          123 -----DH-LSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFID  163 (338)
T ss_dssp             -----HH-HHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             -----HH-HhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEe
Confidence                 11 133456777777777665555566565433 45555543

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.19  E-value=0.0044  Score=59.75  Aligned_cols=36  Identities=14%  Similarity=0.363  Sum_probs=29.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D  301 (403)
                      +.-|+|+|+||+|||++|+.++.++....++.++..
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~   80 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS   80 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECC
T ss_pred             CceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhH
Confidence            467899999999999999999998844446666554

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.13  E-value=0.0032  Score=56.46  Aligned_cols=28  Identities=21%  Similarity=0.369  Sum_probs=24.5

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ...++|.++|++||||||+++.++..++
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3578999999999999999999987664

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.12  E-value=0.015  Score=58.55  Aligned_cols=39  Identities=18%  Similarity=0.235  Sum_probs=29.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC----CCccEEEeccHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLIL  304 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~----~~~~~v~ls~D~ir  304 (403)
                      ..-++++|+||+||||+|+.++..+    +...++.++...+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~  172 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL  172 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence            5678899999999999999988754    23346677665543

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.10  E-value=0.003  Score=56.06  Aligned_cols=31  Identities=26%  Similarity=0.466  Sum_probs=24.9

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      +++++|.+||||||||.+++.. . ...+++.+
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~-~-~~~~yiaT   31 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD-A-PQVLYIAT   31 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS-C-SSEEEEEC
T ss_pred             CEEEECCCCCcHHHHHHHHHhc-C-CCeEEEec
Confidence            3788999999999999999876 3 33566665

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.08  E-value=0.0047  Score=59.80  Aligned_cols=41  Identities=17%  Similarity=0.033  Sum_probs=32.1

Q ss_pred             CCCceEEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHHH
Q 015668          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLI  303 (403)
Q Consensus       263 ~~~~~vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~i  303 (403)
                      ...+.+|.++|++||||||+++.+...+.    .....+++.|..
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f  133 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF  133 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence            34578999999999999999999987653    123677888863

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=96.02  E-value=0.0057  Score=59.49  Aligned_cols=27  Identities=15%  Similarity=0.106  Sum_probs=24.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      ..+|.+-|+-||||||.++.|++.+..
T Consensus         7 ~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            7 IVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            578889999999999999999988764

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.00  E-value=0.0089  Score=50.28  Aligned_cols=31  Identities=16%  Similarity=0.158  Sum_probs=24.6

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      -|++.|.||+|||++|+.++....  .++.++.
T Consensus        29 ~vll~G~~GtGKt~lA~~i~~~~~--~~~~~~~   59 (143)
T 3co5_A           29 PVFLTGEAGSPFETVARYFHKNGT--PWVSPAR   59 (143)
T ss_dssp             CEEEEEETTCCHHHHHGGGCCTTS--CEECCSS
T ss_pred             cEEEECCCCccHHHHHHHHHHhCC--CeEEech
Confidence            378899999999999999987654  3555544

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.93  E-value=0.0026  Score=60.63  Aligned_cols=39  Identities=21%  Similarity=0.091  Sum_probs=29.5

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCc----cEEEe-ccHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEK----RYILL-GTNL  302 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~----~~v~l-s~D~  302 (403)
                      ..+.+|.++|.+||||||+|+.+...+...    ..+.+ +.|.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~   72 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDD   72 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccc
Confidence            457899999999999999999998766421    13444 7775

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.90  E-value=0.0081  Score=57.65  Aligned_cols=38  Identities=13%  Similarity=0.326  Sum_probs=30.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir  304 (403)
                      +.-|+++|+||+|||++|+.+++++.. .++.++...+.
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~~-~~~~v~~~~l~   88 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEANS-TFFSVSSSDLV   88 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHTC-EEEEEEHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHCC-CEEEEchHHHh
Confidence            467899999999999999999988753 46667665544

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.89  E-value=0.003  Score=60.12  Aligned_cols=38  Identities=8%  Similarity=0.170  Sum_probs=27.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLI  303 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~i  303 (403)
                      ..+|.++|.+||||||+|+.|++.++.  ..+.+|+.|.+
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~   44 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   44 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence            568999999999999999999886531  12577888864

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.88  E-value=0.0046  Score=55.13  Aligned_cols=37  Identities=35%  Similarity=0.310  Sum_probs=28.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      ..++|.++|++||||||+++.++..++. .+.++..|.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~-~i~~v~~d~   41 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTLGE-RVALLPMDH   41 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHGG-GEEEEEGGG
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEecCc
Confidence            4689999999999999999999886531 245565564

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.88  E-value=0.0095  Score=55.61  Aligned_cols=35  Identities=20%  Similarity=0.319  Sum_probs=27.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D  301 (403)
                      +.-++++|+||+||||+|+.++..+.. .++.++..
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~~~~-~~~~v~~~   85 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATETNA-TFIRVVGS   85 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHHTTC-EEEEEEGG
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEehH
Confidence            456899999999999999999998864 35555443

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.87  E-value=0.0044  Score=61.75  Aligned_cols=33  Identities=12%  Similarity=0.274  Sum_probs=29.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      .+|+++|++||||||+|..|++.++   ..+||.|.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~---~~iis~Ds   35 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFN---GEVINSDS   35 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHT---EEEEECCT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCC---CeEeecCc
Confidence            5889999999999999999999987   57888886

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.80  E-value=0.0049  Score=63.37  Aligned_cols=28  Identities=0%  Similarity=-0.069  Sum_probs=25.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      ...+|+++|++||||||+|+.|++.+..
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999999863

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.79  E-value=0.0061  Score=60.74  Aligned_cols=37  Identities=19%  Similarity=0.274  Sum_probs=29.2

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      .+.=|+|.|+||+|||++|+.++.+... .++.++...
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e~~~-~f~~v~~s~  217 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHHTDC-KFIRVSGAE  217 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHHHTC-EEEEEEGGG
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHhhCC-CceEEEhHH
Confidence            3577899999999999999999998763 355565443

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=95.76  E-value=0.012  Score=59.22  Aligned_cols=40  Identities=13%  Similarity=0.334  Sum_probs=30.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE  305 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~  305 (403)
                      +.-|+|.|+||+|||++|+.++.++....++.++...+..
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~  206 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS  206 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence            4678999999999999999999988444577777665443

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.76  E-value=0.0059  Score=54.45  Aligned_cols=25  Identities=24%  Similarity=0.437  Sum_probs=21.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .++++++|++||||||+.+.+...+
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4678999999999999999998754

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=95.73  E-value=0.0077  Score=57.63  Aligned_cols=39  Identities=26%  Similarity=0.177  Sum_probs=29.6

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC---C-ccEEEeccHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---E-KRYILLGTNL  302 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~---~-~~~v~ls~D~  302 (403)
                      ...++|.++|++||||||+++.++..+.   . ....+|+.|.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~  120 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG  120 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence            3468999999999999999999987543   2 2355666664

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.72  E-value=0.0091  Score=56.14  Aligned_cols=35  Identities=17%  Similarity=0.387  Sum_probs=28.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D  301 (403)
                      +.-+++.|+||+||||+|+.++..... .++.++..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~~-~~~~i~~~   88 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECSA-TFLNISAA   88 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTC-EEEEEEST
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCC-CeEEeeHH
Confidence            567899999999999999999998853 35556543

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.69  E-value=0.007  Score=54.56  Aligned_cols=33  Identities=18%  Similarity=0.165  Sum_probs=27.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      ...|+++|++||||||+|..|++...    .+|+.|.
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g~----~iIsdDs   66 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRGH----RLIADDR   66 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTTC----EEEESSE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC----eEEecch
Confidence            57899999999999999999998764    5666664

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.66  E-value=0.014  Score=57.01  Aligned_cols=38  Identities=13%  Similarity=0.326  Sum_probs=29.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir  304 (403)
                      +.-|+|+|+||+|||++|+.++.++.. .++.++...+.
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~~-~~~~v~~~~l~  121 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEANS-TFFSVSSSDLV  121 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHTC-EEEEEEHHHHH
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCC-CEEEeeHHHHh
Confidence            355888999999999999999998753 46666655543

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.62  E-value=0.008  Score=53.16  Aligned_cols=41  Identities=10%  Similarity=0.137  Sum_probs=30.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQM  307 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l  307 (403)
                      ..++++|.||+||||+|+.++.....  ..++.++...+...+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~   97 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFREL   97 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHH
Confidence            67889999999999999999876532  235556666655544

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.62  E-value=0.0051  Score=54.86  Aligned_cols=35  Identities=29%  Similarity=0.154  Sum_probs=27.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D  301 (403)
                      .++++++|.|||||||++..++. ......+.++.+
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~   54 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTE   54 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECC
Confidence            57999999999999999999987 223346666654

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=95.54  E-value=0.011  Score=54.30  Aligned_cols=32  Identities=25%  Similarity=0.388  Sum_probs=26.3

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D  301 (403)
                      ++++|+||+||||+++.++..... .++.++..
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~~-~~i~~~~~   83 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEARV-PFITASGS   83 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTC-CEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC-CEEEeeHH
Confidence            889999999999999999988763 45666543

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.47  E-value=0.0071  Score=61.22  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=29.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      -++=|+|.|+||+|||++|+.++.++.. .++.++...
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e~~~-~fi~vs~s~  278 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANRTDA-TFIRVIGSE  278 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHHHTC-EEEEEEGGG
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccCC-CeEEEEhHH
Confidence            4678999999999999999999998763 356665544

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.45  E-value=0.0085  Score=60.39  Aligned_cols=37  Identities=19%  Similarity=0.233  Sum_probs=29.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      .+.=|+|.|+||+|||++|+.++.++.. .++.++...
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e~~~-~~~~v~~s~  250 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAATIGA-NFIFSPASG  250 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTC-EEEEEEGGG
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEehhh
Confidence            4678999999999999999999998763 355665443

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.42  E-value=0.0087  Score=60.17  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=29.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      .++=|+|.|+||+|||++|+.++.++.. .++.++...
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~~~~-~~~~v~~~~  241 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANSTKA-AFIRVNGSE  241 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHHHTC-EEEEEEGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCC-CeEEEecch
Confidence            4677999999999999999999998763 355565443

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.42  E-value=0.036  Score=53.67  Aligned_cols=26  Identities=19%  Similarity=0.174  Sum_probs=22.9

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .+..++++|+||+||||+|+.+++.+
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999998764

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.0075  Score=60.73  Aligned_cols=37  Identities=22%  Similarity=0.299  Sum_probs=29.9

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      .++=|+|.|+||+|||++|+.++.+... .++.++...
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e~~~-~f~~v~~s~  250 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQTNA-TFLKLAAPQ  250 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTC-EEEEEEGGG
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHHhCC-CEEEEehhh
Confidence            4678999999999999999999998763 356665544

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=95.40  E-value=0.075  Score=53.35  Aligned_cols=36  Identities=17%  Similarity=0.198  Sum_probs=27.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D  301 (403)
                      ..+++++|.||+||||||..++....   ....++++.+
T Consensus       200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE  238 (444)
T 2q6t_A          200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE  238 (444)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            57999999999999999988875432   2346667664

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.36  E-value=0.091  Score=50.74  Aligned_cols=33  Identities=24%  Similarity=0.396  Sum_probs=26.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCc---cEEEec
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEK---RYILLG  299 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~---~~v~ls  299 (403)
                      ..++++|+||+||||+++.++..+...   .++.++
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~   80 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN   80 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence            388999999999999999998876532   345555

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.34  E-value=0.055  Score=52.21  Aligned_cols=34  Identities=18%  Similarity=0.325  Sum_probs=26.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCc-cEEEec
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK-RYILLG  299 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~-~~v~ls  299 (403)
                      ...++++|+||+|||++|+.+++.+... .++.++
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~  104 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA  104 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence            4688999999999999999999887632 344444

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.34  E-value=0.0097  Score=59.73  Aligned_cols=37  Identities=16%  Similarity=0.269  Sum_probs=29.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      -+.=|+|.|+||+|||++|+.++.+... .++.++..+
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~-~fi~v~~s~  251 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQTSA-TFLRIVGSE  251 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHHHTC-EEEEEESGG
T ss_pred             CCCCCceECCCCchHHHHHHHHHHHhCC-CEEEEEHHH
Confidence            3678999999999999999999998763 356665543

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.31  E-value=0.018  Score=62.21  Aligned_cols=40  Identities=23%  Similarity=0.336  Sum_probs=31.7

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir  304 (403)
                      ..+.=|+|.|+||+|||++|+.++.++.. .++.++..++.
T Consensus       236 ~~p~GILL~GPPGTGKT~LAraiA~elg~-~~~~v~~~~l~  275 (806)
T 3cf2_A          236 KPPRGILLYGPPGTGKTLIARAVANETGA-FFFLINGPEIM  275 (806)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHTTTTC-EEEEEEHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhCC-eEEEEEhHHhh
Confidence            34788999999999999999999998864 35666555543

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.29  E-value=0.0092  Score=53.50  Aligned_cols=25  Identities=24%  Similarity=0.158  Sum_probs=22.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ..+++.++|+|||||||+++.++..
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3689999999999999999999863

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.28  E-value=0.015  Score=54.36  Aligned_cols=32  Identities=25%  Similarity=0.388  Sum_probs=26.3

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D  301 (403)
                      ++++|+||+||||+++.++..... .++.++..
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~~-~~i~~~~~  107 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEARV-PFITASGS  107 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTC-CEEEEEHH
T ss_pred             EEEECCCcChHHHHHHHHHHHcCC-CEEEecHH
Confidence            889999999999999999988763 46666543

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.27  E-value=0.06  Score=54.24  Aligned_cols=37  Identities=14%  Similarity=0.357  Sum_probs=27.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D  301 (403)
                      ...+++++|.||+|||||+..++....   ....++++.+
T Consensus       202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E  241 (454)
T 2r6a_A          202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE  241 (454)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            357999999999999999998876432   2236666654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=95.24  E-value=0.013  Score=55.04  Aligned_cols=30  Identities=23%  Similarity=0.420  Sum_probs=24.9

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls  299 (403)
                      ++|+|+||+||||+++.++..+.. ..+.++
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~-~~i~i~   76 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGL-NFISVK   76 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTC-EEEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCC-CEEEEE
Confidence            899999999999999999988764 345554

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=95.23  E-value=0.12  Score=51.01  Aligned_cols=32  Identities=19%  Similarity=0.094  Sum_probs=23.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEE
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYI  296 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v  296 (403)
                      ...+|.+-|.-||||||.++.|++.+....++
T Consensus        48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~~~gvv   79 (376)
T 1of1_A           48 TLLRVYIDGPHGMGKTTTTQLLVALGSRDDIV   79 (376)
T ss_dssp             EEEEEEECSSTTSSHHHHHHHHHC----CCEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhhhCCEE
Confidence            35678888999999999999999887644433

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.21  E-value=0.011  Score=52.74  Aligned_cols=28  Identities=25%  Similarity=0.265  Sum_probs=24.1

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ...+++.++|++||||||+++.++.-++
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3468999999999999999999987764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=95.18  E-value=0.012  Score=54.14  Aligned_cols=27  Identities=30%  Similarity=0.162  Sum_probs=23.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ...+|.++|++||||||+++.++..+.
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~lG   50 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELLG   50 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            468999999999999999999987653

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.15  E-value=0.013  Score=50.69  Aligned_cols=34  Identities=15%  Similarity=0.147  Sum_probs=27.2

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEe
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL  298 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~l  298 (403)
                      ..+++.++|+.||||||+.+.++..++..+-+.+
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~   65 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKS   65 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEE
Confidence            4689999999999999999999987764433333

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.15  E-value=0.056  Score=54.53  Aligned_cols=33  Identities=27%  Similarity=0.311  Sum_probs=26.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls  299 (403)
                      ..-++++|+||+||||+|+.+++.... .++.++
T Consensus        50 ~~~vLL~GppGtGKTtlAr~ia~~~~~-~f~~l~   82 (447)
T 3pvs_A           50 LHSMILWGPPGTGKTTLAEVIARYANA-DVERIS   82 (447)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHhCC-CeEEEE
Confidence            356899999999999999999998763 345554

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.14  E-value=0.026  Score=54.96  Aligned_cols=36  Identities=14%  Similarity=0.282  Sum_probs=28.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D  301 (403)
                      .+.-|+++|+||+||||+|+.++..+.. .++.++..
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~~-~~~~i~~~  151 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSGA-TFFSISAS  151 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTTC-EEEEEEGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCC-eEEEEehH
Confidence            3567899999999999999999998753 35666554

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.13  E-value=0.0093  Score=52.27  Aligned_cols=26  Identities=46%  Similarity=0.620  Sum_probs=22.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +.+++++|.+||||||++.++.+.+.
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence            56899999999999999999987653

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.10  E-value=0.013  Score=56.30  Aligned_cols=39  Identities=23%  Similarity=0.047  Sum_probs=29.1

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCC----ccEEEeccHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE----KRYILLGTNL  302 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~----~~~v~ls~D~  302 (403)
                      ...++|.++|++||||||+++.++..++.    ....++..|.
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~  130 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG  130 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence            45799999999999999999999875431    2245555553

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.06  E-value=0.019  Score=55.21  Aligned_cols=35  Identities=17%  Similarity=0.326  Sum_probs=27.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls  299 (403)
                      ...+++++|..||||||+.+.+......+++.+|-
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~   37 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE   37 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE
Confidence            36799999999999999999999765433444443

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=95.06  E-value=0.012  Score=51.74  Aligned_cols=50  Identities=16%  Similarity=0.116  Sum_probs=31.2

Q ss_pred             hcCCCeEEEeC----CCCCHHHHHHHHHHHhcCCcEEEEEEC-C-hHHHHHHHHHh
Q 015668          341 SRTPRNFIIDQ----TNVFKSARKRKLRLFVNFRKIAVVVFP-K-PEDLKIRSVKR  390 (403)
Q Consensus       341 l~~g~~vIlD~----Tn~~~~~R~~~~~~~~~~~~~~vv~l~-~-pe~~~~R~~~R  390 (403)
                      +.+...+|+|-    +++....++.+++.+.+.+...++... + +....++...|
T Consensus        97 ~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r  152 (178)
T 1ye8_A           97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL  152 (178)
T ss_dssp             HCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred             ccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence            57788999999    456677777777667664333444443 2 34555566655

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.05  E-value=0.05  Score=52.11  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=27.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      ...+++++|.||+||||||..++....  ....++++.+
T Consensus        67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE  105 (315)
T 3bh0_A           67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  105 (315)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence            358999999999999999999875421  2346667654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.04  E-value=0.012  Score=52.77  Aligned_cols=39  Identities=15%  Similarity=0.193  Sum_probs=28.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLIL  304 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir  304 (403)
                      ...++++|+||+||||+|+.+++.+..  ..++.++.+.+.
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~   92 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA   92 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence            567899999999999999999876531  235666655443

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=95.03  E-value=0.011  Score=50.25  Aligned_cols=26  Identities=19%  Similarity=0.438  Sum_probs=22.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..+.++++|++|+||||+++.++...
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            35688899999999999999998765

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.02  E-value=0.011  Score=53.46  Aligned_cols=27  Identities=22%  Similarity=0.420  Sum_probs=24.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++.++|++||||||+++.++..++
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~p   48 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEFP   48 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            357899999999999999999998775

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.01  E-value=0.031  Score=55.00  Aligned_cols=36  Identities=17%  Similarity=0.340  Sum_probs=28.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      ..-|+|.|+||+|||++|+.++.++.. .++.++...
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~~-~~~~v~~~~  183 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESNA-TFFNISAAS  183 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTC-EEEEECSCC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcC-cEEEeeHHH
Confidence            467899999999999999999998753 456665543

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=94.97  E-value=0.035  Score=53.13  Aligned_cols=107  Identities=10%  Similarity=-0.034  Sum_probs=64.9

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP  344 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g  344 (403)
                      .+.+|++-|.-||||||.++.+.+.+...++.++.+..       .+.          ++..   ...++.....+-.+|
T Consensus        85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~-------Pt~----------eE~~---~~yl~R~~~~LP~~G  144 (304)
T 3czq_A           85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTK-------PTE----------TERG---QWYFQRYVATFPTAG  144 (304)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCS-------CCH----------HHHT---SCTTHHHHTTCCCTT
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCC-------cCh----------HHHh---chHHHHHHHhcccCC
Confidence            37899999999999999999999999876665543211       110          0000   001112232233789


Q ss_pred             CeEEEeCCCCCHH------------HHHHHHHHHhc-------CC-cEEEEEECCh-HHHHHHHHHhc
Q 015668          345 RNFIIDQTNVFKS------------ARKRKLRLFVN-------FR-KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       345 ~~vIlD~Tn~~~~------------~R~~~~~~~~~-------~~-~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      ..+|.|-...+.-            ...+.++.+..       .+ .+..++|+.+ ++.++|..+|.
T Consensus       145 ~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~  212 (304)
T 3czq_A          145 EFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRR  212 (304)
T ss_dssp             CEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHH
T ss_pred             eEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhh
Confidence            9999997543332            11122333222       23 4555788886 88999998875

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=94.96  E-value=0.035  Score=52.32  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=20.5

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      +++.|+||+||||+|+.+++.+
T Consensus        49 ~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           49 LLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            8999999999999999998875

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=94.93  E-value=0.014  Score=55.83  Aligned_cols=39  Identities=23%  Similarity=0.344  Sum_probs=29.4

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL  302 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~  302 (403)
                      ..+++++++|++||||||+++.++..+.  .+...+.+.|.
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~  138 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT  138 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence            4579999999999999999999976543  22355566553

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=94.92  E-value=0.015  Score=56.33  Aligned_cols=38  Identities=26%  Similarity=0.275  Sum_probs=28.5

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      ..+++++++|++||||||+++.++..+.  .+...+.+.|
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D  166 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD  166 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec
Confidence            4589999999999999999999876443  1235555555

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=94.92  E-value=0.012  Score=59.28  Aligned_cols=38  Identities=24%  Similarity=0.347  Sum_probs=29.9

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~  302 (403)
                      .+.+|+++|+||+||||.+.+|+..+..  +...+++.|.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~  138 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT  138 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4899999999999999999988764432  3467777774

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=94.89  E-value=0.015  Score=55.81  Aligned_cols=37  Identities=24%  Similarity=0.312  Sum_probs=28.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      .+++|+++|++||||||+++.++..+.  .+...+.+.|
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D  139 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD  139 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeec
Confidence            578999999999999999999985443  2235556655

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=94.88  E-value=0.013  Score=52.40  Aligned_cols=36  Identities=19%  Similarity=0.334  Sum_probs=26.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      .++++++|.|||||||+++.++....  ....++++.+
T Consensus        23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~   60 (235)
T 2w0m_A           23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE   60 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence            47899999999999999999884321  1235566554

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=94.87  E-value=0.013  Score=53.99  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=26.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      +.-++++|+||+||||+|+.++..+.. .++.++.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~-~~~~i~~   78 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKV-PFFTISG   78 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTC-CEEEECS
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCC-CEEEEeH
Confidence            345889999999999999999987642 2566654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=94.86  E-value=0.021  Score=58.24  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=27.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      +.-|+|+|+||+||||+|+.++.+... .++.++..+
T Consensus        49 p~gvLL~GppGtGKT~Laraia~~~~~-~f~~is~~~   84 (476)
T 2ce7_A           49 PKGILLVGPPGTGKTLLARAVAGEANV-PFFHISGSD   84 (476)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHHTC-CEEEEEGGG
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCC-CeeeCCHHH
Confidence            344889999999999999999987653 366665543

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=94.82  E-value=0.021  Score=52.35  Aligned_cols=34  Identities=18%  Similarity=0.324  Sum_probs=27.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      +.-++++|+||+||||+|+.++.++.. .++.++.
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~~~~-~~~~~~~   72 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATEAQV-PFLAMAG   72 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTC-CEEEEET
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCC-CEEEech
Confidence            466889999999999999999987753 3555544

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=94.80  E-value=0.23  Score=47.21  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=22.8

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHh
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ...-.|.++|.|++||||+.+++...
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            44678999999999999999999864

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=94.74  E-value=0.015  Score=48.91  Aligned_cols=24  Identities=21%  Similarity=0.242  Sum_probs=21.1

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      -|++.|.||+|||++|+.++....
T Consensus        26 ~vll~G~~GtGKt~lA~~i~~~~~   49 (145)
T 3n70_A           26 AVWLYGAPGTGRMTGARYLHQFGR   49 (145)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHSST
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCC
Confidence            378999999999999999988653

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=94.73  E-value=0.013  Score=59.04  Aligned_cols=37  Identities=30%  Similarity=0.231  Sum_probs=28.9

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      .+.+|+++|++||||||++.+|+..+.  .+...+++.|
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D  134 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD  134 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence            489999999999999999988875443  2346667766

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=94.64  E-value=0.014  Score=56.41  Aligned_cols=26  Identities=27%  Similarity=0.394  Sum_probs=23.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +..++++|+||+||||+|+.++..+.
T Consensus        51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~   76 (334)
T 1in4_A           51 LDHVLLAGPPGLGKTTLAHIIASELQ   76 (334)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            46788999999999999999998874

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=94.63  E-value=0.015  Score=52.49  Aligned_cols=37  Identities=22%  Similarity=0.278  Sum_probs=28.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHh--CC------CccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKD--HP------EKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~--~~------~~~~v~ls~D  301 (403)
                      ..++++++|.|||||||++..++..  .+      ....+.++.+
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~   67 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE   67 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence            3579999999999999999999874  31      2345666554

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=94.61  E-value=0.017  Score=51.23  Aligned_cols=26  Identities=23%  Similarity=0.244  Sum_probs=22.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +..++++|+||+||||+|+.+++.+.
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            35889999999999999999987653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=94.61  E-value=0.019  Score=56.41  Aligned_cols=39  Identities=23%  Similarity=0.344  Sum_probs=29.7

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL  302 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~  302 (403)
                      ..+++|+|+|++||||||+++.++..+.  .+...+.+.|.
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~  195 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT  195 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence            4579999999999999999999986543  23355666663

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=94.57  E-value=0.021  Score=54.42  Aligned_cols=38  Identities=21%  Similarity=0.279  Sum_probs=29.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D~  302 (403)
                      .+++|+++|++||||||++..++..+.   ++...+++.|.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~  144 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT  144 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence            468999999999999999999976543   23466676664

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=94.56  E-value=0.018  Score=52.05  Aligned_cols=36  Identities=19%  Similarity=0.385  Sum_probs=26.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC--CCccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~ls~D  301 (403)
                      .++++++|.|||||||++.+++...  .....+.++.+
T Consensus        23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e   60 (247)
T 2dr3_A           23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE   60 (247)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            5789999999999999998886532  12346667665

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=94.55  E-value=0.033  Score=51.71  Aligned_cols=35  Identities=26%  Similarity=0.340  Sum_probs=27.6

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls  299 (403)
                      ..+.-++++|+||+||||+|+.+++.... .++.++
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~-~~~~i~   96 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEESNF-PFIKIC   96 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHTC-SEEEEE
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhCC-CEEEEe
Confidence            34678999999999999999999987643 355553

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=94.52  E-value=0.021  Score=53.61  Aligned_cols=34  Identities=24%  Similarity=0.325  Sum_probs=26.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      +.-++++|+||+||||+|+.+++.+.. .++.++.
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~~-~~~~i~~   83 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLANA-PFIKVEA   83 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTC-CEEEEEG
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCC-CEEEEcc
Confidence            456789999999999999999988753 3566654

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=94.42  E-value=0.074  Score=53.58  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=28.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      ...++++.|.||+||||||..++....  +...+++|.+
T Consensus       196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE  234 (444)
T 3bgw_A          196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  234 (444)
T ss_dssp             SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence            358999999999999999988865432  3347778775

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=94.40  E-value=0.019  Score=54.17  Aligned_cols=36  Identities=22%  Similarity=0.184  Sum_probs=26.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEecc
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGT  300 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~  300 (403)
                      ..++++++|.|||||||+++.++....   ....++++.
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~   72 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML   72 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            358999999999999999998875442   113555554

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.37  E-value=0.023  Score=49.89  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=22.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++++|.+||||||+++++...+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            57899999999999999999987643

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.37  E-value=0.025  Score=58.56  Aligned_cols=37  Identities=19%  Similarity=0.358  Sum_probs=28.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      ....++++|+||+||||+|+.++..+.. .+..++...
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~i~~~~  143 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGR-KFVRISLGG  143 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTC-EEEEECCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCC-CeEEEEecc
Confidence            3568999999999999999999987753 355565443

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=94.34  E-value=0.033  Score=54.20  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=27.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      ..-|+++|+||+|||++|+.+++.+.. .++.++.
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~~~-~~~~~~~   84 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLLDV-PFTMADA   84 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTC-CEEEEEH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCC-CEEEech
Confidence            456889999999999999999998753 3666644

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=94.32  E-value=0.024  Score=50.80  Aligned_cols=25  Identities=28%  Similarity=0.423  Sum_probs=20.9

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .+.+++++|.||||||++|..+...
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence            3568899999999999999887544

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=94.32  E-value=0.017  Score=51.32  Aligned_cols=24  Identities=29%  Similarity=0.342  Sum_probs=21.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      +++.++|++||||||+.+.++..+
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhc
Confidence            468899999999999999998754

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=94.31  E-value=0.078  Score=54.03  Aligned_cols=37  Identities=16%  Similarity=0.057  Sum_probs=28.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D  301 (403)
                      ...++++.|.||+||||||.+++....   ....++++.+
T Consensus       241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E  280 (503)
T 1q57_A          241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE  280 (503)
T ss_dssp             TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred             CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence            368999999999999999999876543   2346777765

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.23  E-value=0.023  Score=49.81  Aligned_cols=22  Identities=32%  Similarity=0.512  Sum_probs=20.2

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      ++++|+||+||||+|+.+++.+
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999998764

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=94.23  E-value=0.023  Score=58.26  Aligned_cols=38  Identities=32%  Similarity=0.322  Sum_probs=28.0

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      ..+.+|+++|+||+||||++.+|+..+.  .+...+++.|
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D  138 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD  138 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence            4578999999999999999999985432  2236677666

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=94.22  E-value=0.032  Score=56.29  Aligned_cols=34  Identities=24%  Similarity=0.325  Sum_probs=27.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      +.-|+|+|+||+||||+|+.++..++. .++.++.
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~~-~~~~v~~   83 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLANA-PFIKVEA   83 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTC-CEEEEEG
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcCC-Cceeecc
Confidence            345889999999999999999998864 3555644

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=94.20  E-value=0.026  Score=54.47  Aligned_cols=39  Identities=21%  Similarity=0.330  Sum_probs=30.2

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL  302 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~  302 (403)
                      ..+++|+++|++|+||||++..++..+.  .+...+++.|.
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~  143 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT  143 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4579999999999999999998876443  23467777664

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.12  E-value=0.029  Score=49.43  Aligned_cols=33  Identities=12%  Similarity=0.145  Sum_probs=26.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      -.-|+++|.+|+||||+|..|.+.-    +..++-|.
T Consensus        16 G~gvli~G~SGaGKStlal~L~~rG----~~lvaDD~   48 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDRG----HQLVCDDV   48 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHTT----CEEEESSE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcC----CeEecCCE
Confidence            4678999999999999999998853    45565553

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=94.10  E-value=0.054  Score=50.09  Aligned_cols=37  Identities=19%  Similarity=0.256  Sum_probs=28.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEecc-HHHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQ  306 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~-D~ir~~  306 (403)
                      .+|.++|.+||||||.|+.+...+.   +.+++. +.++++
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g---~~~~~~~~~~~~~   39 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYS---AVKYQLAGPIKDA   39 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSC---EEECCTTHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC---CeEEecChHHHHH
Confidence            5789999999999999999988765   555654 334443

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.06  E-value=0.1  Score=56.77  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=20.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHhC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~  290 (403)
                      -++++|.||+||||+|+.++..+
T Consensus       193 ~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          193 NPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHH
T ss_pred             ceEEEcCCCCCHHHHHHHHHHHH
Confidence            36889999999999999998875

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=94.02  E-value=0.031  Score=56.19  Aligned_cols=38  Identities=29%  Similarity=0.382  Sum_probs=30.1

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN  301 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D  301 (403)
                      ..+.+|+++|++|+||||.+.+|+..+.   +++..+++.|
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D  138 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD  138 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence            4578999999999999999988875443   3347778777

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=94.01  E-value=0.024  Score=52.99  Aligned_cols=24  Identities=21%  Similarity=0.158  Sum_probs=21.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~  288 (403)
                      ..++++++|.|||||||++..++.
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            358999999999999999998875

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=94.01  E-value=0.066  Score=54.65  Aligned_cols=39  Identities=21%  Similarity=0.322  Sum_probs=31.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE  305 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~  305 (403)
                      +.-|++.|+||+|||++|+.++.+.. ..++.++...+..
T Consensus       238 ~~~vLL~GppGtGKT~lAraia~~~~-~~fv~vn~~~l~~  276 (489)
T 3hu3_A          238 PRGILLYGPPGTGKTLIARAVANETG-AFFFLINGPEIMS  276 (489)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHCS-SEEEEEEHHHHHT
T ss_pred             CCcEEEECcCCCCHHHHHHHHHHHhC-CCEEEEEchHhhh
Confidence            45689999999999999999999874 3577787666553

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=94.00  E-value=0.039  Score=50.90  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=27.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCC--ccEEEecc
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGT  300 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~  300 (403)
                      .-|+++|.||+|||++|+.++.....  ..++.++.
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~   65 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC   65 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEG
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEec
Confidence            45788999999999999999987653  24677764

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=93.97  E-value=0.038  Score=53.99  Aligned_cols=32  Identities=22%  Similarity=0.279  Sum_probs=25.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls  299 (403)
                      .-++++|+||+||||+|+.+++.+.. .++.++
T Consensus        73 ~~ill~Gp~GtGKT~la~~la~~l~~-~~~~~~  104 (376)
T 1um8_A           73 SNILLIGPTGSGKTLMAQTLAKHLDI-PIAISD  104 (376)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTC-CEEEEE
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCC-CEEEec
Confidence            45889999999999999999998853 355554

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=93.96  E-value=0.031  Score=52.19  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=22.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..++++++|++||||||+.+.+...+
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHhC
Confidence            35899999999999999999987654

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=93.95  E-value=0.022  Score=51.62  Aligned_cols=26  Identities=12%  Similarity=0.308  Sum_probs=23.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      ..+++.|+||+||||+|..+++.+..
T Consensus        59 n~ili~GPPGtGKTt~a~ala~~l~g   84 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIHFIQG   84 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            45899999999999999999988764

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=93.94  E-value=0.03  Score=57.21  Aligned_cols=39  Identities=31%  Similarity=0.354  Sum_probs=28.6

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL  302 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~  302 (403)
                      ...++|+|+|++||||||+++.|+..+.  .+...+.+.|.
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~  331 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT  331 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence            3579999999999999999999976542  22344445554

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=93.90  E-value=0.021  Score=57.44  Aligned_cols=39  Identities=31%  Similarity=0.424  Sum_probs=30.1

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNL  302 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~  302 (403)
                      ..+.+|+++|+||+||||++.+|+..+..  +...+++.|.
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~  137 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT  137 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence            34789999999999999999999875431  2367777773

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=93.86  E-value=0.037  Score=52.92  Aligned_cols=43  Identities=14%  Similarity=0.062  Sum_probs=31.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC-C--ccEEEeccHHHHHHhh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP-E--KRYILLGTNLILEQMK  308 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~-~--~~~v~ls~D~ir~~l~  308 (403)
                      ..-+++.|+||+|||++|..++..+. .  ..++.++...+...+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~  197 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVK  197 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHH
Confidence            46788999999999999999886543 2  2355677676666653

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=93.82  E-value=0.029  Score=51.50  Aligned_cols=35  Identities=17%  Similarity=0.168  Sum_probs=27.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++.-++. .+-+.++
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~   65 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID   65 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEEC
Confidence            3589999999999999999999876542 3345553

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=93.80  E-value=0.032  Score=55.05  Aligned_cols=28  Identities=25%  Similarity=0.157  Sum_probs=24.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      ..++++++|+|||||||+++.++.....
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g  195 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLELCGG  195 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence            3579999999999999999999987653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=93.69  E-value=0.046  Score=50.97  Aligned_cols=35  Identities=26%  Similarity=0.251  Sum_probs=27.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++.-++..+-+.++
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~   79 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIG   79 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEET
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEEC
Confidence            35789999999999999999998766544455554

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=93.68  E-value=0.048  Score=52.09  Aligned_cols=33  Identities=18%  Similarity=0.182  Sum_probs=26.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      .-|+++|+||+||||+|+.+++.+.. .++.++.
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~~~-~~~~~~~   88 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEMSA-NIKTTAA   88 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHTTC-CEEEEEG
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhCC-CeEEecc
Confidence            45789999999999999999988753 3555554

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=93.66  E-value=0.019  Score=50.26  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=21.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ++++.++|.+||||||+++.+...+.
T Consensus         2 ~~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            2 SLILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             -CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            46889999999999999999987654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=93.66  E-value=0.046  Score=53.24  Aligned_cols=37  Identities=22%  Similarity=0.285  Sum_probs=28.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      ...+|+++|.||+||||++.+++..+.  .+...++..|
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D  116 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD  116 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence            467899999999999999999976542  2345666666

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=93.65  E-value=0.037  Score=54.16  Aligned_cols=26  Identities=35%  Similarity=0.438  Sum_probs=22.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ...|+++|+|||||||+++.++..+.
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            45688999999999999998887653

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=93.65  E-value=0.018  Score=53.27  Aligned_cols=32  Identities=25%  Similarity=0.432  Sum_probs=24.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      -++++|+||+||||+|+.++.+... .++.++.
T Consensus        46 ~vll~G~~GtGKT~la~~la~~~~~-~~~~v~~   77 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGEAHV-PFFSMGG   77 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHHHTC-CCCCCCS
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCC-CEEEech
Confidence            3789999999999999999987642 2444443

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=93.61  E-value=0.039  Score=51.91  Aligned_cols=36  Identities=17%  Similarity=0.233  Sum_probs=27.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D  301 (403)
                      ...++++|+||+||||+|+.++..+..  ..++.++..
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~   84 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT   84 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence            357899999999999999999887632  235666543

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=93.61  E-value=0.036  Score=52.83  Aligned_cols=36  Identities=33%  Similarity=0.326  Sum_probs=28.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      +.+|+++|.+|+||||++..++..+.  .+...+++.|
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D  135 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD  135 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            78999999999999999998875543  2346777777

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=93.60  E-value=0.038  Score=48.67  Aligned_cols=24  Identities=29%  Similarity=0.244  Sum_probs=19.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ..+++++|.|||||||.+.+++..
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~   26 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEI   26 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            358899999999999999666544

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=93.60  E-value=0.033  Score=53.35  Aligned_cols=26  Identities=15%  Similarity=0.342  Sum_probs=23.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..+++.++|++||||||+++.++.-+
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            35789999999999999999998776

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=93.58  E-value=0.031  Score=50.89  Aligned_cols=35  Identities=20%  Similarity=0.197  Sum_probs=26.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++.-.+ ..+-+.++
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~   64 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLE   64 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEET
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence            357899999999999999999986554 23445553

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.56  E-value=0.034  Score=50.15  Aligned_cols=24  Identities=25%  Similarity=0.217  Sum_probs=21.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .+++.++|++||||||+.+.++.-
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            578899999999999999998754

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=93.55  E-value=0.081  Score=54.12  Aligned_cols=108  Identities=12%  Similarity=-0.049  Sum_probs=63.8

Q ss_pred             CCCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH--HHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHH
Q 015668          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN--LILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA  340 (403)
Q Consensus       263 ~~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D--~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~a  340 (403)
                      ...+.+|++-|.-||||+|.++.+.+.+...++.++...  .-.+.        .+.|              +.......
T Consensus        40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~--------~~~y--------------l~R~~~~l   97 (500)
T 3czp_A           40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEEL--------ERPP--------------QWRFWRRL   97 (500)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHH--------TSCT--------------THHHHHHC
T ss_pred             CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhc--------cCCh--------------hhhHHHhC
Confidence            345799999999999999999999999987665554321  10000        0011              11233334


Q ss_pred             hcCCCeEEEeCCCCCH------------HHHHHHHHHHhcC-------C-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          341 SRTPRNFIIDQTNVFK------------SARKRKLRLFVNF-------R-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       341 l~~g~~vIlD~Tn~~~------------~~R~~~~~~~~~~-------~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      -.+|..+|.|-...+.            ....+.++.+..|       + .+..++|+.+ ++.++|..+|..
T Consensus        98 P~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~  170 (500)
T 3czp_A           98 PPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEK  170 (500)
T ss_dssp             CCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-----
T ss_pred             CCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhc
Confidence            5789999999764333            2222233333222       3 4556788886 899999999864

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=93.55  E-value=0.049  Score=49.93  Aligned_cols=38  Identities=18%  Similarity=0.279  Sum_probs=29.0

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC-CccEEEeccH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTN  301 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls~D  301 (403)
                      ....+++++|.+|+||||++..++..+. .++..+++.|
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D   50 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD   50 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3468899999999999999999986543 2236677665

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=93.53  E-value=0.037  Score=51.01  Aligned_cols=33  Identities=15%  Similarity=0.263  Sum_probs=26.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls  299 (403)
                      +++.++|++||||||+.+.++.-.+ ..+-+.++
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~   58 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLN   58 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence            7899999999999999999987654 23445553

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=93.51  E-value=0.046  Score=48.66  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=22.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ....|+++|.+|+||||++.++...+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            35788999999999999999998764

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=93.50  E-value=0.029  Score=53.65  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=21.7

Q ss_pred             EEEEccCCCChhHHHHHHHHhCC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ++++|.||+|||++|+.+++.++
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCc
Confidence            88999999999999999999876

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=93.46  E-value=0.036  Score=50.91  Aligned_cols=27  Identities=15%  Similarity=0.302  Sum_probs=23.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++.++|++||||||+.+.++.-.+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            357899999999999999999987653

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=93.46  E-value=0.04  Score=49.77  Aligned_cols=36  Identities=17%  Similarity=0.309  Sum_probs=25.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC---CCccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~---~~~~~v~ls~D  301 (403)
                      ..+++++|.||+||||||.+++.+.   ..+..++++.+
T Consensus        30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E   68 (251)
T 2zts_A           30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE   68 (251)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence            5799999999999999998875321   12235566654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=93.41  E-value=0.039  Score=46.20  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=20.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      -=|+++|.+|+||||+.+++....
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcCC
Confidence            347889999999999999998643

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=93.38  E-value=0.04  Score=45.87  Aligned_cols=23  Identities=26%  Similarity=0.536  Sum_probs=20.3

Q ss_pred             EEEEEccCCCChhHHHHHHHHhC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~  290 (403)
                      -|+++|.+|+||||+.+++....
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=93.33  E-value=0.053  Score=55.52  Aligned_cols=32  Identities=25%  Similarity=0.344  Sum_probs=26.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      =|+|+|+||+||||+|+.++..... .++.++.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~~~~-~~i~i~g   97 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGEARV-PFITASG   97 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHTTC-CEEEEEG
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC-CEEEEeh
Confidence            3899999999999999999988753 4666654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=93.33  E-value=0.042  Score=45.67  Aligned_cols=23  Identities=22%  Similarity=0.489  Sum_probs=20.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHhC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~  290 (403)
                      -|+++|.+|+||||+.+++....
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            37889999999999999998653

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=93.27  E-value=0.043  Score=47.99  Aligned_cols=26  Identities=12%  Similarity=0.289  Sum_probs=22.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      .-.|+++|.+||||||+.+.+.....
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~~   54 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNEF   54 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence            45688999999999999999987643

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=93.25  E-value=0.043  Score=45.69  Aligned_cols=23  Identities=17%  Similarity=0.372  Sum_probs=20.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHhC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~  290 (403)
                      -|+++|.||+||||+..++....
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998643

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=93.25  E-value=0.037  Score=51.85  Aligned_cols=48  Identities=23%  Similarity=0.315  Sum_probs=32.8

Q ss_pred             CCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECChHHHHHHHHHh
Q 015668          343 TPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKPEDLKIRSVKR  390 (403)
Q Consensus       343 ~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~pe~~~~R~~~R  390 (403)
                      +.+.+|+|-  +++.+..++.+++.+++..   ...++++.-+.+...+...|
T Consensus       165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~  217 (266)
T 4g1u_C          165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADR  217 (266)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSE
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCE
Confidence            788899997  7788888888888877642   46776666553333444444

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.24  E-value=0.063  Score=55.02  Aligned_cols=35  Identities=23%  Similarity=0.184  Sum_probs=28.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      .+..++++|+||+||||+|+.+++++. ..++.++.
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~-~~~i~in~  110 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELG-YDILEQNA  110 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTT-CEEEEECT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC-CCEEEEeC
Confidence            357899999999999999999999885 23555543

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=93.18  E-value=0.071  Score=51.67  Aligned_cols=38  Identities=18%  Similarity=0.232  Sum_probs=29.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHh--CC------CccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKD--HP------EKRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~--~~------~~~~v~ls~D~  302 (403)
                      ...+++++|.|||||||++..++..  .+      ....+.|+++.
T Consensus       121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            4689999999999999999999875  21      23466676643

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=93.15  E-value=0.038  Score=52.12  Aligned_cols=35  Identities=23%  Similarity=0.218  Sum_probs=26.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++.-++. .+-+.++
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~   68 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFD   68 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEEC
Confidence            3588999999999999999999876542 3344443

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=93.14  E-value=0.046  Score=45.56  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=19.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      -=|+++|.+|+||||+.+++...
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            34788999999999999999864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=93.10  E-value=0.049  Score=50.16  Aligned_cols=27  Identities=15%  Similarity=0.137  Sum_probs=23.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++.++|++||||||+.+.++.-++
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            368999999999999999999987554

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=93.10  E-value=0.042  Score=52.95  Aligned_cols=26  Identities=23%  Similarity=0.291  Sum_probs=23.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .+..++++|+||+||||+|+.+++.+
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            45688999999999999999998766

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=93.10  E-value=0.044  Score=51.15  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=26.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEe
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILL  298 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~l  298 (403)
                      ..+++.++|++||||||+.+.++.-++ ..+-+.+
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~   65 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV   65 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence            358899999999999999999987654 2344444

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.04  E-value=0.049  Score=45.61  Aligned_cols=23  Identities=22%  Similarity=0.486  Sum_probs=19.8

Q ss_pred             EEEEEccCCCChhHHHHHHHHhC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~  290 (403)
                      =|+++|.+|+||||+.+++....
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37889999999999999998644

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=93.02  E-value=0.048  Score=50.51  Aligned_cols=35  Identities=31%  Similarity=0.376  Sum_probs=26.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHh--C-CCccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKD--H-PEKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~--~-~~~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++.-  . +..+-+.++
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~   65 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLD   65 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEEC
Confidence            3578999999999999999999874  2 233445553

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=93.02  E-value=0.046  Score=51.14  Aligned_cols=50  Identities=12%  Similarity=0.192  Sum_probs=33.1

Q ss_pred             hcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHh
Q 015668          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKR  390 (403)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~pe~~~~R~~~R  390 (403)
                      +.+-+.+|+|-  +++.+..|+.+++.+.+..  ...++++.-+.+...+...|
T Consensus       175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~  228 (263)
T 2olj_A          175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDR  228 (263)
T ss_dssp             TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred             HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCE
Confidence            56778999998  7788888888887776542  45666665543333444444

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=92.99  E-value=0.05  Score=45.63  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=20.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      -=|+++|.+|+||||+.+++....
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            347889999999999999998654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=92.98  E-value=0.044  Score=50.99  Aligned_cols=35  Identities=17%  Similarity=0.245  Sum_probs=26.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++.-++ ..+-+.++
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~   67 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE   67 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence            357899999999999999999987654 23445443

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=92.97  E-value=0.069  Score=51.25  Aligned_cols=37  Identities=19%  Similarity=0.219  Sum_probs=28.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC--C------CccEEEeccHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH--P------EKRYILLGTNL  302 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~--~------~~~~v~ls~D~  302 (403)
                      ..+++++|.|||||||++..++...  +      ....+.++++.
T Consensus       107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            5799999999999999999998753  2      23466676653

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=92.97  E-value=0.044  Score=50.40  Aligned_cols=35  Identities=20%  Similarity=0.256  Sum_probs=26.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++.-++ ..+-+.++
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~   66 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN   66 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence            357899999999999999999987654 23445443

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=92.96  E-value=0.041  Score=55.50  Aligned_cols=25  Identities=24%  Similarity=0.429  Sum_probs=22.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      .-++|.|+||+|||++|+.+++.+.
T Consensus        64 ~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           64 RAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHhC
Confidence            5588999999999999999998875

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=92.95  E-value=0.11  Score=49.22  Aligned_cols=108  Identities=10%  Similarity=0.123  Sum_probs=67.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP  344 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g  344 (403)
                      .+.+|++-|.-||||.+.++++.+.+...++.+++...          +   .  .  +   ++....+.+.....-..|
T Consensus        74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~----------P---t--~--e---E~~~~ylwR~~~~lP~~G  133 (289)
T 3rhf_A           74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKA----------P---T--D--E---EKSHDFLWRIEKQVPAAG  133 (289)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCS----------C---C--H--H---HHTSCTTHHHHTTCCCTT
T ss_pred             CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCC----------C---C--h--h---hhcCCHHHHHHHhCCCCC
Confidence            57899999999999999999999999876665553210          0   0  0  0   111111222343446789


Q ss_pred             CeEEEeCCCCCHHHH------------HHHHH---HHhcC---CcEEE--EEECCh-HHHHHHHHHhcc
Q 015668          345 RNFIIDQTNVFKSAR------------KRKLR---LFVNF---RKIAV--VVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       345 ~~vIlD~Tn~~~~~R------------~~~~~---~~~~~---~~~~v--v~l~~p-e~~~~R~~~R~~  392 (403)
                      +.+|+|-+...+-..            .+.++   .|...   ..+.+  ++|..+ ++.++|..+|..
T Consensus       134 ~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~  202 (289)
T 3rhf_A          134 MVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLD  202 (289)
T ss_dssp             CEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             eEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhc
Confidence            999999876544321            12222   33321   13333  688887 899999999864

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=92.95  E-value=0.037  Score=52.91  Aligned_cols=26  Identities=19%  Similarity=0.236  Sum_probs=22.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      .-+++.|+||+|||++|+.++..++.
T Consensus        47 ~~vll~G~pGtGKT~la~~la~~~~~   72 (331)
T 2r44_A           47 GHILLEGVPGLAKTLSVNTLAKTMDL   72 (331)
T ss_dssp             CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            35889999999999999999998764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=92.94  E-value=0.051  Score=46.15  Aligned_cols=25  Identities=24%  Similarity=0.460  Sum_probs=21.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .--|+++|.+|+||||+.+++....
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCc
Confidence            4557889999999999999998654

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=92.94  E-value=0.045  Score=50.65  Aligned_cols=35  Identities=26%  Similarity=0.276  Sum_probs=27.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++.-++. .+-+.++
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~   69 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID   69 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence            3578999999999999999999876542 3445553

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=92.93  E-value=0.051  Score=47.60  Aligned_cols=24  Identities=13%  Similarity=0.386  Sum_probs=20.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      --|+++|.+|+||||+.+.+....
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            457899999999999999998753

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=92.92  E-value=0.046  Score=49.94  Aligned_cols=27  Identities=15%  Similarity=0.233  Sum_probs=23.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++.++|++||||||+.+.++.-++
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            357899999999999999999987654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=92.90  E-value=0.052  Score=45.53  Aligned_cols=23  Identities=22%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             EEEEEccCCCChhHHHHHHHHhC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~  290 (403)
                      =|+++|.+|+||||+.+++....
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47889999999999999998543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=92.89  E-value=0.052  Score=46.01  Aligned_cols=24  Identities=17%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      -=|+++|.+|+||||+.+++....
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            457889999999999999998653

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=92.89  E-value=0.047  Score=52.49  Aligned_cols=26  Identities=19%  Similarity=0.264  Sum_probs=23.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .+..++++|+||+||||+++.++..+
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            46788999999999999999998765

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=92.88  E-value=0.062  Score=52.32  Aligned_cols=26  Identities=27%  Similarity=0.284  Sum_probs=22.8

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHh
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ....+|.++|.|||||||+.+.+...
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence            34789999999999999999999864

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=92.87  E-value=0.057  Score=51.31  Aligned_cols=37  Identities=35%  Similarity=0.443  Sum_probs=28.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      .+++++++|.+|+||||++..++..+.  .+...+++.|
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d  135 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD  135 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence            578999999999999999999876543  2346666665

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=92.87  E-value=0.055  Score=50.62  Aligned_cols=25  Identities=28%  Similarity=0.332  Sum_probs=22.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ..+++.++|++||||||+.+.++.-
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3578999999999999999999875

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=92.84  E-value=0.053  Score=45.56  Aligned_cols=23  Identities=17%  Similarity=0.356  Sum_probs=20.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      --|+++|.+|+||||+.+++...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            45788999999999999999864

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=92.84  E-value=0.053  Score=45.79  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      --|+++|.||+||||+.+++...
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCccHHHHHHHHhcC
Confidence            34789999999999999999754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=92.83  E-value=0.053  Score=45.46  Aligned_cols=23  Identities=22%  Similarity=0.344  Sum_probs=19.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      --|+++|.+|+||||+.+++...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            34788999999999999999864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=92.83  E-value=0.039  Score=49.98  Aligned_cols=35  Identities=23%  Similarity=0.120  Sum_probs=26.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC-CccEEEecc
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGT  300 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls~  300 (403)
                      .+++.++|++||||||+.+.++.-.+ ..+-+.++.
T Consensus        35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g   70 (214)
T 1sgw_A           35 GNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG   70 (214)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC
Confidence            57888999999999999999987654 234555543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=92.83  E-value=0.057  Score=45.14  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=19.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHh
Q 015668          268 VMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~  289 (403)
                      =|+++|.+|+||||+.+++...
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3788999999999999999864

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=92.82  E-value=0.067  Score=50.05  Aligned_cols=34  Identities=26%  Similarity=0.289  Sum_probs=27.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls  299 (403)
                      .+++.++|++||||||+.+.++.-.|..+-+.++
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~   63 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFIN   63 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEET
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEEC
Confidence            5789999999999999999998765544455554

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=92.82  E-value=0.06  Score=52.15  Aligned_cols=26  Identities=19%  Similarity=0.187  Sum_probs=22.8

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHh
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ....++.++|.|||||||+.+.+...
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~   78 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSL   78 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            35789999999999999999999754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=92.81  E-value=0.071  Score=47.58  Aligned_cols=26  Identities=27%  Similarity=0.323  Sum_probs=22.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ....|+++|.+|+||||++.+++...
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            35678888999999999999998764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=92.79  E-value=0.058  Score=45.75  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=19.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      --|+++|.||+||||+.+++...
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            45788999999999999999754

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=92.79  E-value=0.053  Score=52.15  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=20.8

Q ss_pred             EEEEccCCCChhHHHHHHHHhCC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ++++|+||+||||+|+.++..+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            78999999999999999998753

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=92.79  E-value=0.054  Score=45.90  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ..|+++|.||+||||+.+++...
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            45889999999999999999863

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=92.75  E-value=0.055  Score=46.80  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=21.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..-|+++|.+|+||||+..++....
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4568899999999999999998764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=92.73  E-value=0.056  Score=45.42  Aligned_cols=20  Identities=35%  Similarity=0.498  Sum_probs=18.3

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q 015668          269 MMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~  288 (403)
                      |+++|.||+||||+.+++..
T Consensus         5 i~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            5 VMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78899999999999999964

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=92.73  E-value=0.073  Score=57.56  Aligned_cols=40  Identities=20%  Similarity=0.327  Sum_probs=31.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~  306 (403)
                      +.=|+|.|+||+|||.+|+.++.+... .++.++..++..+
T Consensus       511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~-~f~~v~~~~l~s~  550 (806)
T 3cf2_A          511 SKGVLFYGPPGCGKTLLAKAIANECQA-NFISIKGPELLTM  550 (806)
T ss_dssp             CSCCEEESSTTSSHHHHHHHHHHTTTC-EEEECCHHHHHTT
T ss_pred             CceEEEecCCCCCchHHHHHHHHHhCC-ceEEeccchhhcc
Confidence            566899999999999999999998863 4666766665543

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=92.72  E-value=0.054  Score=50.86  Aligned_cols=35  Identities=29%  Similarity=0.226  Sum_probs=27.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++.-++ ..+-+.++
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~   79 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLD   79 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEEC
Confidence            357899999999999999999987654 23445553

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=92.72  E-value=0.054  Score=50.44  Aligned_cols=35  Identities=17%  Similarity=0.119  Sum_probs=26.9

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++.-++ ..+-+.++
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~   75 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF   75 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence            357899999999999999999987654 23445553

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=92.71  E-value=0.055  Score=51.71  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=20.2

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      +++.|+||+||||+|+.+++.+
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8899999999999999998774

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=92.71  E-value=0.058  Score=52.51  Aligned_cols=26  Identities=23%  Similarity=0.127  Sum_probs=23.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..+++.++|.|||||||++..++...
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            46899999999999999999998765

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=92.69  E-value=0.068  Score=52.54  Aligned_cols=27  Identities=19%  Similarity=0.260  Sum_probs=23.2

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ...+++++|++||||||+.+.++..++
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            457999999999999999999987543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=92.68  E-value=0.054  Score=45.36  Aligned_cols=20  Identities=25%  Similarity=0.544  Sum_probs=18.3

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q 015668          269 MMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~  288 (403)
                      |+++|.||+||||+.+++..
T Consensus         5 i~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            5 VLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHcC
Confidence            68899999999999999964

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=92.61  E-value=0.063  Score=44.91  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=20.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      --|+++|.+|+||||+.+++...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            45788999999999999999863

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=92.60  E-value=0.068  Score=51.66  Aligned_cols=23  Identities=22%  Similarity=0.292  Sum_probs=20.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .++++.|+||+||||+|.+++..
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh
Confidence            56789999999999999999875

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=92.60  E-value=0.061  Score=45.52  Aligned_cols=26  Identities=12%  Similarity=0.192  Sum_probs=21.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..--|+++|.+|+||||+.+++....
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCC
Confidence            34568889999999999999998654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=92.58  E-value=0.4  Score=50.19  Aligned_cols=51  Identities=6%  Similarity=0.018  Sum_probs=33.7

Q ss_pred             HhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHh
Q 015668          340 ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKR  390 (403)
Q Consensus       340 al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~pe~~~~R~~~R  390 (403)
                      .+.+-+.+|+|-  +++....+..+++.+.+..  ...++++.-.-....+...|
T Consensus       236 L~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~dr  290 (608)
T 3j16_B          236 CVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDF  290 (608)
T ss_dssp             HHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSE
T ss_pred             HHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence            357788999995  7888888888777777653  45676776553233333333

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=92.56  E-value=0.058  Score=50.42  Aligned_cols=35  Identities=20%  Similarity=0.217  Sum_probs=26.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++.-++ ..+-+.++
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~   67 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYD   67 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEC
Confidence            357899999999999999999987654 23344443

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=92.54  E-value=0.054  Score=50.21  Aligned_cols=35  Identities=23%  Similarity=0.299  Sum_probs=26.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++.-++..+-+.++
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~   59 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFA   59 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEET
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEEC
Confidence            35789999999999999999998765422445443

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=92.54  E-value=0.062  Score=45.56  Aligned_cols=24  Identities=17%  Similarity=0.376  Sum_probs=20.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ..-|+++|.+|+||||+.+++...
T Consensus         9 ~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            9 THKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            455788999999999999999865

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=92.53  E-value=0.054  Score=46.82  Aligned_cols=21  Identities=43%  Similarity=0.629  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.||+||||+.+++...
T Consensus         5 v~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            5 LMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999863

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=92.53  E-value=0.083  Score=51.14  Aligned_cols=38  Identities=16%  Similarity=0.232  Sum_probs=27.2

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      ....+|.++|.||+||||+++.++..+.  .....+++.|
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d   93 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD   93 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence            4578899999999999999999975431  1224455444

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=92.52  E-value=0.062  Score=46.34  Aligned_cols=25  Identities=20%  Similarity=0.375  Sum_probs=21.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .--|+++|.+|+||||++.++....
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcCC
Confidence            3457889999999999999998653

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=92.49  E-value=0.055  Score=51.06  Aligned_cols=34  Identities=24%  Similarity=0.284  Sum_probs=26.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEe
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILL  298 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~l  298 (403)
                      ..+++.++|++||||||+.+.++.-++ ..+-+.+
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~   80 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL   80 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEE
Confidence            357899999999999999999987654 2334444

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=92.48  E-value=0.061  Score=45.61  Aligned_cols=24  Identities=25%  Similarity=0.277  Sum_probs=20.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ..-|+++|.+|+||||+.+++...
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456889999999999999999753

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.47  E-value=0.062  Score=47.60  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=21.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..-|+++|.+|+||||+..++....
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4567899999999999999998764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=92.44  E-value=0.059  Score=50.53  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=20.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHhC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .++++|.+||||||+.+.++...
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47889999999999999998644

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=92.43  E-value=0.053  Score=53.03  Aligned_cols=128  Identities=18%  Similarity=0.118  Sum_probs=63.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccHHHHHHhhcCCCccc--CCC-hHHHHHHHHHHHHHHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPGLLRK--HNY-SERFQCLMGRANAIFDVLLSRAS  341 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D~ir~~l~~~g~~~~--~~~-~~~~~~~~~~a~~~~~~ll~~al  341 (403)
                      .++++++|++||||||+.+.+....+. .+.+.+.  ..+ ++......+.  ..+ +.......  ........+..++
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie--~~~-e~~~~~~~~~v~~v~~q~~~~~~~--~~~t~~~~i~~~l  249 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE--DVP-ELFLPDHPNHVHLFYPSEAKEEEN--APVTAATLLRSCL  249 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE--SSS-CCCCTTCSSEEEEECC------------CCHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC--Ccc-ccCccccCCEEEEeecCccccccc--cccCHHHHHHHHH
Confidence            478999999999999999999987763 3455553  111 1110000000  011 11000000  0111234555566


Q ss_pred             cCCC-eEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHhcccc--Cccccc
Q 015668          342 RTPR-NFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRFKEM--GKEQIM  400 (403)
Q Consensus       342 ~~g~-~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~pe~~~~R~~~R~~~~--g~~Vp~  400 (403)
                      +..- ..|++..-. ..... +++.+..-+  .+....-.++....+|........  ++.+|.
T Consensus       250 ~~~pd~~l~~e~r~-~~~~~-~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~~~~~~~~~  311 (361)
T 2gza_A          250 RMKPTRILLAELRG-GEAYD-FINVAASGHGGSITSCHAGSCELTFERLALMVLQNRQGRQLPY  311 (361)
T ss_dssp             TSCCSEEEESCCCS-THHHH-HHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTTSTTGGGSCH
T ss_pred             hcCCCEEEEcCchH-HHHHH-HHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhccccccCCCH
Confidence            5444 455555432 22222 455454433  344455555678888888776543  334443

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=92.40  E-value=0.068  Score=45.81  Aligned_cols=24  Identities=17%  Similarity=0.219  Sum_probs=20.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .-=|+++|.+|+||||+.+++...
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            445788999999999999999864

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=92.39  E-value=0.067  Score=44.93  Aligned_cols=24  Identities=25%  Similarity=0.309  Sum_probs=20.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .--|+++|.+|+||||+..++...
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            345889999999999999999754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=92.39  E-value=0.065  Score=45.56  Aligned_cols=24  Identities=25%  Similarity=0.486  Sum_probs=20.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .-=|+++|.+|+||||+.+++...
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            345788999999999999999864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=92.37  E-value=0.066  Score=46.14  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=20.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      --|+++|.+|+||||+.+++...
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            34788999999999999999875

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=92.37  E-value=0.067  Score=45.77  Aligned_cols=24  Identities=21%  Similarity=0.444  Sum_probs=20.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      -=|+++|.+|+||||+.+++....
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            347889999999999999998643

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=92.36  E-value=0.069  Score=52.09  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=23.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      .+.+.++|.+||||||+++.++..++
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            57889999999999999999988765

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=92.36  E-value=0.073  Score=44.44  Aligned_cols=22  Identities=45%  Similarity=0.527  Sum_probs=19.4

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |+++|.+|+||||+.+++....
T Consensus         3 i~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            6899999999999999997543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=92.36  E-value=0.061  Score=46.54  Aligned_cols=24  Identities=13%  Similarity=0.332  Sum_probs=20.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .--|+++|.+|+||||+.+++...
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456788999999999999999864

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=92.32  E-value=0.067  Score=45.95  Aligned_cols=24  Identities=21%  Similarity=0.338  Sum_probs=21.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ..-|+++|.+|+||||+.+++...
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            356889999999999999999864

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=92.31  E-value=0.06  Score=49.97  Aligned_cols=27  Identities=19%  Similarity=0.351  Sum_probs=23.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++.++|++||||||+.+.++.-++
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            357899999999999999999987654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=92.30  E-value=0.047  Score=48.02  Aligned_cols=25  Identities=12%  Similarity=0.165  Sum_probs=21.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ...|+++|.+||||||+.+.+....
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            5789999999999999999987543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=92.30  E-value=0.069  Score=45.50  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=20.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ..=|+++|.+|+||||+.+++...
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            345788999999999999999864

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=92.30  E-value=0.077  Score=51.95  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=27.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      ..++++.|+|||||||++..++....  ....+.|+.+
T Consensus        61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E   98 (356)
T 3hr8_A           61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE   98 (356)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence            58999999999999999999876532  2235566654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=92.29  E-value=0.081  Score=45.32  Aligned_cols=25  Identities=16%  Similarity=0.304  Sum_probs=21.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..-|+++|.||+||||+.+++....
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3568899999999999999998653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.26  E-value=0.071  Score=45.30  Aligned_cols=25  Identities=24%  Similarity=0.294  Sum_probs=21.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .--|+++|.+|+||||+.+++....
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCC
Confidence            3457889999999999999998643

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=92.24  E-value=0.07  Score=45.95  Aligned_cols=23  Identities=30%  Similarity=0.416  Sum_probs=20.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      --|+++|.+|+||||+.+++...
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            44778999999999999999865

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=92.18  E-value=0.072  Score=45.58  Aligned_cols=24  Identities=13%  Similarity=0.378  Sum_probs=20.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .-=|+++|.+|+||||+.+++...
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            345788999999999999999754

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=92.16  E-value=0.076  Score=53.22  Aligned_cols=37  Identities=35%  Similarity=0.443  Sum_probs=29.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D  301 (403)
                      .+.+|+++|++||||||++..++..+..  +...+++.|
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D  135 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD  135 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence            5789999999999999999998865432  346677766

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=92.12  E-value=0.075  Score=44.93  Aligned_cols=23  Identities=22%  Similarity=0.416  Sum_probs=19.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      --|+++|.+|+||||+.+++...
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45778899999999999999854

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=92.12  E-value=0.073  Score=45.64  Aligned_cols=21  Identities=19%  Similarity=0.338  Sum_probs=19.1

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.+|+||||+.+++...
T Consensus         4 i~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            4 IIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCc
Confidence            688999999999999999864

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=92.10  E-value=0.074  Score=46.02  Aligned_cols=25  Identities=16%  Similarity=0.400  Sum_probs=21.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .-=|+++|.+|+||||+.+++....
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            4557889999999999999998643

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=92.07  E-value=0.071  Score=45.16  Aligned_cols=24  Identities=13%  Similarity=0.332  Sum_probs=20.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .-=|+++|.+|+||||+.+++...
T Consensus         9 ~~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B            9 LFKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            345788999999999999999753

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=92.05  E-value=0.06  Score=50.88  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=26.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      ...++++|.||+||||+|+.+++.... .++.++.
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~~-~~~~~~~   71 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELGV-NLRVTSG   71 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHTC-CEEEECT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhCC-CEEEEec
Confidence            356889999999999999999887652 3555543

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=92.04  E-value=0.17  Score=51.74  Aligned_cols=107  Identities=14%  Similarity=0.089  Sum_probs=67.0

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH--HHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHh
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN--LILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS  341 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D--~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al  341 (403)
                      ..+.+|++-|.-||||+|.++.+.+.+...++.++...  .-.+.        .+.|              +.+.....-
T Consensus       298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~--------~~~y--------------l~R~~~~lP  355 (500)
T 3czp_A          298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEER--------AQPY--------------LWRFWRHIP  355 (500)
T ss_dssp             GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHH--------TSCT--------------THHHHTTCC
T ss_pred             CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhh--------cchH--------------HHHHHHhCC
Confidence            35899999999999999999999999886655444221  10000        0011              112333345


Q ss_pred             cCCCeEEEeCCCCCHH------------HHHHHHHH---Hh----cCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          342 RTPRNFIIDQTNVFKS------------ARKRKLRL---FV----NFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~------------~R~~~~~~---~~----~~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      .+|..+|.|-+...+-            ...+.++.   |.    +.+ .+..++|+.+ ++.++|..+|..
T Consensus       356 ~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~  427 (500)
T 3czp_A          356 ARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREK  427 (500)
T ss_dssp             CTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhc
Confidence            7899999998655432            22222333   32    223 4555788886 899999999965

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=92.02  E-value=0.062  Score=51.57  Aligned_cols=21  Identities=19%  Similarity=0.389  Sum_probs=19.7

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      ++++|+||+||||+++.++..
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999999885

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=92.02  E-value=0.076  Score=51.76  Aligned_cols=36  Identities=25%  Similarity=0.214  Sum_probs=26.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      ..++++.|.|||||||++..++....  ....+.++.+
T Consensus        61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E   98 (349)
T 2zr9_A           61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE   98 (349)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            57899999999999999998875421  2235666654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=92.02  E-value=0.071  Score=45.83  Aligned_cols=24  Identities=17%  Similarity=0.260  Sum_probs=20.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      --|+++|.+|+||||+.+++....
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCc
Confidence            457789999999999999998653

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=92.01  E-value=0.078  Score=45.30  Aligned_cols=24  Identities=17%  Similarity=0.297  Sum_probs=20.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .--|+++|.+|+||||+.+++...
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            345788999999999999999864

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=91.97  E-value=0.08  Score=45.14  Aligned_cols=23  Identities=26%  Similarity=0.254  Sum_probs=19.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      -=|+++|.+|+||||+.+++...
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            34788999999999999999854

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=91.95  E-value=0.085  Score=45.51  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=20.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHhC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~  290 (403)
                      +.+++|.+||||||+.+.+.--+
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHH
Confidence            88999999999999999986543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=91.93  E-value=0.096  Score=45.29  Aligned_cols=26  Identities=31%  Similarity=0.411  Sum_probs=21.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..--|+++|.+|+||||+.+++....
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcCC
Confidence            34557889999999999999998643

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=91.92  E-value=0.08  Score=46.11  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=20.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .--|+++|.+|+||||+.+++...
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            445788999999999999999754

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=91.91  E-value=0.061  Score=51.96  Aligned_cols=33  Identities=27%  Similarity=0.406  Sum_probs=26.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEe
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILL  298 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~l  298 (403)
                      .++++++|.+||||||+.+.+....+. .+.+.+
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i  204 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI  204 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEE
Confidence            468999999999999999999987653 344555

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=91.91  E-value=0.18  Score=53.91  Aligned_cols=25  Identities=28%  Similarity=0.210  Sum_probs=21.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..-++++|.||+||||+|+.++..+
T Consensus       207 ~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          207 KNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            3457899999999999999998765

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=91.89  E-value=0.088  Score=51.47  Aligned_cols=26  Identities=19%  Similarity=0.211  Sum_probs=22.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++++|++||||||+.+.++..++
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccc
Confidence            45999999999999999998876543

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=91.83  E-value=0.075  Score=52.83  Aligned_cols=22  Identities=14%  Similarity=0.207  Sum_probs=20.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWV  287 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~  287 (403)
                      .+++.++|.|||||||++..++
T Consensus       178 Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          178 GSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEEcCCCCChHHHHHHHH
Confidence            5799999999999999999875

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=91.82  E-value=0.083  Score=45.03  Aligned_cols=23  Identities=17%  Similarity=0.442  Sum_probs=20.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~  288 (403)
                      ..-|+++|.+|+||||+.+++..
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            34578999999999999999984

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=91.80  E-value=0.093  Score=49.82  Aligned_cols=34  Identities=21%  Similarity=0.284  Sum_probs=27.2

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls  299 (403)
                      .+.++++.|+||+||||+|+.+++.+.. .++.++
T Consensus        47 ~~~~~L~~G~~G~GKT~la~~la~~l~~-~~~~i~   80 (324)
T 3u61_B           47 IPHIILHSPSPGTGKTTVAKALCHDVNA-DMMFVN   80 (324)
T ss_dssp             CCSEEEECSSTTSSHHHHHHHHHHHTTE-EEEEEE
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhCC-CEEEEc
Confidence            3568889999999999999999998852 345554

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=91.75  E-value=0.086  Score=45.37  Aligned_cols=25  Identities=16%  Similarity=0.387  Sum_probs=21.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .--|+++|.+|+||||+.+++....
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            3568889999999999999998653

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=91.71  E-value=0.084  Score=52.80  Aligned_cols=27  Identities=19%  Similarity=0.243  Sum_probs=23.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ...+++++|++||||||+.+.+...++
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            357999999999999999999987654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=91.69  E-value=0.089  Score=45.43  Aligned_cols=25  Identities=20%  Similarity=0.445  Sum_probs=21.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .--|+++|.+|+||||+.+++....
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC
Confidence            4567889999999999999998653

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=91.66  E-value=0.089  Score=45.60  Aligned_cols=25  Identities=20%  Similarity=0.286  Sum_probs=20.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .-=|+++|.+|+||||+.+++....
T Consensus        20 ~~ki~ivG~~~vGKSsL~~~~~~~~   44 (184)
T 3ihw_A           20 ELKVGIVGNLSSGKSALVHRYLTGT   44 (184)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Confidence            3457789999999999999988653

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=91.62  E-value=0.14  Score=48.49  Aligned_cols=32  Identities=19%  Similarity=0.518  Sum_probs=26.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D  301 (403)
                      .+++++|++|+||||+++++.+..+   ++.++..
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~---~~~~~~~   63 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERP---GILIDCR   63 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSS---EEEEEHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcC---cEEEEee
Confidence            6899999999999999999998874   6666543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=91.61  E-value=0.091  Score=45.35  Aligned_cols=25  Identities=16%  Similarity=0.260  Sum_probs=21.2

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ...-|+++|.+|+||||+.+++...
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcC
Confidence            3456888999999999999999754

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=91.60  E-value=0.1  Score=49.74  Aligned_cols=24  Identities=25%  Similarity=0.231  Sum_probs=22.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ..+++++|.|||||||+|.+++..
T Consensus        98 g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           98 QSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            589999999999999999999864

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.60  E-value=0.097  Score=45.32  Aligned_cols=24  Identities=21%  Similarity=0.470  Sum_probs=20.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      -=|+++|.+++||||+.+++....
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhcCC
Confidence            447889999999999999998765

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=91.60  E-value=0.092  Score=45.32  Aligned_cols=25  Identities=16%  Similarity=0.325  Sum_probs=21.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .-=|+++|.+|+||||+.+++....
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            4458899999999999999998644

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=91.58  E-value=0.092  Score=50.54  Aligned_cols=26  Identities=23%  Similarity=0.244  Sum_probs=22.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +..++++|+||+||||+|+.+++.+.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45789999999999999999988764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=91.57  E-value=0.11  Score=44.76  Aligned_cols=25  Identities=28%  Similarity=0.161  Sum_probs=20.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      -=|+++|.||+||||+.+.+.....
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4478899999999999987765543

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.55  E-value=0.096  Score=45.31  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=20.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      --|+++|.+++||||+.+++...
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCcHHHHHHHHHcC
Confidence            45788999999999999999864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=91.54  E-value=0.093  Score=45.80  Aligned_cols=25  Identities=20%  Similarity=0.389  Sum_probs=21.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..-|+++|.+|+||||+.+++....
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            4567889999999999999998653

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=91.54  E-value=0.092  Score=45.59  Aligned_cols=25  Identities=24%  Similarity=0.401  Sum_probs=21.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .-=|+++|.+|+||||+.+++....
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            3457889999999999999998654

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=91.51  E-value=0.094  Score=49.14  Aligned_cols=22  Identities=32%  Similarity=0.512  Sum_probs=20.4

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      ++++|+||+||||+|+.+++.+
T Consensus        41 ~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHHHH
T ss_pred             EEEECcCCcCHHHHHHHHHHHh
Confidence            8899999999999999998874

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=91.48  E-value=0.099  Score=51.21  Aligned_cols=49  Identities=12%  Similarity=0.240  Sum_probs=32.8

Q ss_pred             hcCCCeEEEeC--CCCCHHHHHHHHHHHhcC---CcEEEEEECCh-HHHHHHHHHh
Q 015668          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNF---RKIAVVVFPKP-EDLKIRSVKR  390 (403)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~---~~~~vv~l~~p-e~~~~R~~~R  390 (403)
                      +.+-+.+|+|-  +++.+..|..+++.+.+.   ..+.++++.-+ +++ .+...|
T Consensus       154 ~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea-~~~aDr  208 (359)
T 3fvq_A          154 APDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEA-LQYADR  208 (359)
T ss_dssp             TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-HHHCSE
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HHHCCE
Confidence            56788999997  788888888776655543   25677777665 443 344444

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.46  E-value=0.096  Score=45.56  Aligned_cols=23  Identities=13%  Similarity=0.341  Sum_probs=20.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      -=|+++|.+|+||||+.+++...
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45788999999999999999865

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=91.46  E-value=0.095  Score=45.84  Aligned_cols=25  Identities=24%  Similarity=0.494  Sum_probs=21.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .-=|+++|.+|+||||+.+++....
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCC
Confidence            4557889999999999999998654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=91.44  E-value=0.095  Score=45.72  Aligned_cols=24  Identities=21%  Similarity=0.468  Sum_probs=20.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      -=|+++|.+|+||||+.+++....
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            457889999999999999998643

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=91.41  E-value=0.11  Score=44.65  Aligned_cols=25  Identities=28%  Similarity=0.412  Sum_probs=21.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .--|+++|.+|+||||+.+++....
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~~   45 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMNE   45 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Confidence            4567899999999999999998643

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=91.41  E-value=0.1  Score=45.42  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=19.8

Q ss_pred             EEEEEccCCCChhHHHHHHHHh
Q 015668          268 VMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~  289 (403)
                      -|+++|.||+||||+.+++...
T Consensus        25 ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           25 KLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999863

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=91.41  E-value=0.1  Score=44.41  Aligned_cols=24  Identities=25%  Similarity=0.209  Sum_probs=20.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      -=|+++|.+|+||||+.+++....
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            347789999999999999998653

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=91.39  E-value=0.12  Score=44.72  Aligned_cols=26  Identities=15%  Similarity=0.259  Sum_probs=21.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..-=|+++|.+|+||||+.+++....
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhCC
Confidence            34567899999999999999998643

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.38  E-value=0.073  Score=45.43  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~  288 (403)
                      .--|+++|.+|+||||+..++..
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            45678899999999999999974

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=91.36  E-value=0.083  Score=45.35  Aligned_cols=25  Identities=32%  Similarity=0.457  Sum_probs=21.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .--|+++|.+|+||||+.+++....
T Consensus        18 ~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           18 ELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Confidence            4567889999999999999998543

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.31  E-value=0.1  Score=44.98  Aligned_cols=24  Identities=29%  Similarity=0.423  Sum_probs=20.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .--|+++|.+|+||||+.+++...
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            456789999999999999999854

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=91.30  E-value=0.078  Score=45.08  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=20.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      -=|+++|.+|+||||+.+++...
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            34788999999999999999865

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=91.26  E-value=0.1  Score=45.13  Aligned_cols=25  Identities=12%  Similarity=0.213  Sum_probs=21.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .-=|+++|.+|+||||+.+++....
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            3457889999999999999998643

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=91.24  E-value=0.11  Score=48.64  Aligned_cols=25  Identities=28%  Similarity=0.442  Sum_probs=22.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..|++.|+||+|||++|..++....
T Consensus       105 n~~~l~GppgtGKt~~a~ala~~~~  129 (267)
T 1u0j_A          105 NTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhhc
Confidence            4689999999999999999998753

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=91.24  E-value=0.1  Score=49.58  Aligned_cols=27  Identities=15%  Similarity=0.233  Sum_probs=23.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++.++|++||||||+.+.++.-++
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            357999999999999999999987654

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=91.21  E-value=0.11  Score=51.02  Aligned_cols=35  Identities=14%  Similarity=0.160  Sum_probs=26.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++.-.+ ..+-+.++
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~   88 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVD   88 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEEC
Confidence            358999999999999999999987554 23445553

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=91.20  E-value=0.071  Score=51.04  Aligned_cols=35  Identities=17%  Similarity=0.173  Sum_probs=27.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++.-++. .+-+.++
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~  114 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRID  114 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEET
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEEC
Confidence            3588999999999999999999876542 3445553

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=91.20  E-value=0.08  Score=54.19  Aligned_cols=25  Identities=20%  Similarity=0.299  Sum_probs=22.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      .=|+|+|+||+|||++|+.++....
T Consensus        42 ~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           42 ESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             CeeEeecCchHHHHHHHHHHHHHHh
Confidence            3578999999999999999998774

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=91.18  E-value=0.11  Score=45.48  Aligned_cols=26  Identities=19%  Similarity=0.372  Sum_probs=21.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..--|+++|.+|+||||+.+++....
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence            35668889999999999999998654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=91.17  E-value=0.1  Score=45.63  Aligned_cols=24  Identities=17%  Similarity=0.342  Sum_probs=20.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .--|+++|.+|+||||+..++...
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            345788999999999999999754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=91.15  E-value=0.1  Score=44.98  Aligned_cols=25  Identities=24%  Similarity=0.427  Sum_probs=21.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .--|+++|.+|+||||+.+++....
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~~   40 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASED   40 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC
Confidence            4567899999999999999998653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=91.13  E-value=0.11  Score=45.05  Aligned_cols=25  Identities=28%  Similarity=0.275  Sum_probs=21.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .-=|+++|.+|+||||+.+++....
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCC
Confidence            4567889999999999999998653

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=91.09  E-value=0.11  Score=50.81  Aligned_cols=35  Identities=20%  Similarity=0.267  Sum_probs=26.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC--CCccEEEecc
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGT  300 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~ls~  300 (403)
                      ..++++.|.||+||||+|..++...  .....+.++.
T Consensus        63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~   99 (356)
T 1u94_A           63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   99 (356)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            5789999999999999999887542  1224677776

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=91.07  E-value=0.11  Score=46.03  Aligned_cols=24  Identities=29%  Similarity=0.360  Sum_probs=20.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .-=|+++|.+|+||||+.+++...
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            445788999999999999999875

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=91.06  E-value=0.13  Score=46.81  Aligned_cols=33  Identities=15%  Similarity=0.236  Sum_probs=24.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEe
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILL  298 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~l  298 (403)
                      ..+++++|.|||||||.+.+++..+.  ....+++
T Consensus        12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~   46 (223)
T 2b8t_A           12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF   46 (223)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence            57999999999999999887766543  2234555

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=91.02  E-value=0.1  Score=53.51  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=19.9

Q ss_pred             CceEEEEEccCCCChhHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKW  286 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l  286 (403)
                      ..++++++|.|||||||+++.+
T Consensus        38 ~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           38 IGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHH
Confidence            4689999999999999999994

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.01  E-value=0.12  Score=45.77  Aligned_cols=24  Identities=17%  Similarity=0.360  Sum_probs=20.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .--|+++|.+|+||||+.+++...
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            445788999999999999999854

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=91.01  E-value=0.13  Score=44.48  Aligned_cols=26  Identities=35%  Similarity=0.320  Sum_probs=21.5

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHh
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ....-|+++|.+|+||||+.+++...
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            34567889999999999999999754

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=91.01  E-value=0.076  Score=51.16  Aligned_cols=26  Identities=8%  Similarity=0.097  Sum_probs=23.2

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .+..+++.|+||+|||+.++.+++++
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            46778999999999999999998876

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=90.96  E-value=0.09  Score=46.09  Aligned_cols=22  Identities=32%  Similarity=0.368  Sum_probs=19.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWV  287 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~  287 (403)
                      .--|+++|.||+||||+.+++.
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHH
Confidence            4568899999999999999995

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=90.95  E-value=0.12  Score=51.04  Aligned_cols=49  Identities=10%  Similarity=0.186  Sum_probs=34.5

Q ss_pred             hcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 015668          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR  390 (403)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~p-e~~~~R~~~R  390 (403)
                      +.+-+.+|+|-  +++....|..+++.+++..   .+.++++.-+ +++ .+...|
T Consensus       149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea-~~~aDr  203 (381)
T 3rlf_A          149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA-MTLADK  203 (381)
T ss_dssp             HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-HHHCSE
T ss_pred             HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH-HHhCCE
Confidence            56888999998  8888888888877777642   4677777665 443 344444

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=90.91  E-value=0.1  Score=45.79  Aligned_cols=21  Identities=29%  Similarity=0.427  Sum_probs=18.9

Q ss_pred             EEEEEccCCCChhHHHHHHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~  288 (403)
                      -|+++|.||+||||+.+++..
T Consensus        27 ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           27 KLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEEETTSSHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999974

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=90.89  E-value=0.12  Score=49.07  Aligned_cols=25  Identities=12%  Similarity=0.240  Sum_probs=22.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      .+++.++|.+||||||+.+.+. .+.
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            4688999999999999999999 654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=90.87  E-value=0.12  Score=45.36  Aligned_cols=24  Identities=21%  Similarity=0.439  Sum_probs=20.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .--|+++|.+|+||||+..++...
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456789999999999999999854

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=90.87  E-value=0.12  Score=45.44  Aligned_cols=25  Identities=20%  Similarity=0.288  Sum_probs=21.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .--|+++|.+|+||||+.+++....
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhCC
Confidence            4557889999999999999997643

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=90.84  E-value=0.14  Score=50.35  Aligned_cols=36  Identities=19%  Similarity=0.215  Sum_probs=27.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      ..++++.|.||+||||+|..++....  ....+.++++
T Consensus        74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E  111 (366)
T 1xp8_A           74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE  111 (366)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence            46888899999999999998875431  2246777765

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=90.84  E-value=0.12  Score=50.48  Aligned_cols=35  Identities=23%  Similarity=0.166  Sum_probs=26.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++--.+ ..+-+.++
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~   63 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD   63 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEEC
Confidence            357899999999999999999986554 23445553

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=90.80  E-value=0.12  Score=46.92  Aligned_cols=25  Identities=16%  Similarity=0.247  Sum_probs=21.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..-|+++|.+|+||||+.+.+....
T Consensus        29 ~~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           29 QLRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHcCCC
Confidence            4568899999999999999998654

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=90.80  E-value=0.12  Score=48.44  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=20.4

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      ++++|+||+||||+|+.+++.+
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            8899999999999999998875

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=90.76  E-value=0.12  Score=50.57  Aligned_cols=49  Identities=12%  Similarity=0.274  Sum_probs=33.3

Q ss_pred             hcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 015668          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR  390 (403)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~p-e~~~~R~~~R  390 (403)
                      +.+-+.+|+|-  +++....|+.+++.+++..   ...++++.-+ +++ .+...|
T Consensus       161 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adr  215 (355)
T 1z47_A          161 APRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEA-LEVADR  215 (355)
T ss_dssp             TTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH-HHHCSE
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH-HHhCCE
Confidence            56788999998  7788888888877776642   4566666555 443 344444

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=90.74  E-value=0.077  Score=45.35  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=9.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .--|+++|.+|+||||+.+++...
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEEECCCCC------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            345788999999999999998754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=90.72  E-value=0.12  Score=45.44  Aligned_cols=25  Identities=28%  Similarity=0.377  Sum_probs=20.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..-|+++|.+|+||||+..++....
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3457889999999999999998643

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.71  E-value=0.13  Score=45.30  Aligned_cols=24  Identities=33%  Similarity=0.401  Sum_probs=20.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .=|+++|.+|+||||+..++....
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             cEEEEECcCCCCHHHHHHHHhcCC
Confidence            457889999999999999998643

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=90.70  E-value=0.12  Score=44.88  Aligned_cols=24  Identities=25%  Similarity=0.300  Sum_probs=19.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .--|+++|.+|+||||+.+++...
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            455788999999999999999743

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=90.69  E-value=0.12  Score=45.20  Aligned_cols=24  Identities=13%  Similarity=0.414  Sum_probs=19.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .-=|+++|.+|+||||+.+++...
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            445788999999999999999743

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=90.65  E-value=0.12  Score=45.55  Aligned_cols=25  Identities=20%  Similarity=0.373  Sum_probs=20.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .-=|+++|.+|+||||+.+++....
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCC
Confidence            3457889999999999999998643

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=90.64  E-value=0.13  Score=50.34  Aligned_cols=35  Identities=26%  Similarity=0.239  Sum_probs=26.9

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++--.+ ..+-+.++
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~   63 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFD   63 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEEC
Confidence            358899999999999999999987554 23445553

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=90.58  E-value=0.12  Score=50.57  Aligned_cols=26  Identities=12%  Similarity=0.219  Sum_probs=22.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      .+++.++|.||+||||+.+.|.....
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CCEEEEECCCCccHHHHHHHHhcccc
Confidence            46889999999999999999987553

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=90.54  E-value=0.14  Score=50.68  Aligned_cols=35  Identities=17%  Similarity=0.217  Sum_probs=27.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++.-++..+-+.++
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~   80 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQID   80 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEES
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEEC
Confidence            46899999999999999999998655433345554

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=90.53  E-value=0.12  Score=44.78  Aligned_cols=23  Identities=26%  Similarity=0.523  Sum_probs=19.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      -=|+++|.+|+||||+.+++...
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC-
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            44778999999999999999754

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=90.53  E-value=0.13  Score=45.22  Aligned_cols=24  Identities=25%  Similarity=0.250  Sum_probs=20.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .--|+++|.+|+||||+..++...
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            456788999999999999999854

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=90.52  E-value=0.3  Score=52.35  Aligned_cols=37  Identities=19%  Similarity=0.255  Sum_probs=28.6

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLIL  304 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~ir  304 (403)
                      .++++|+||+|||++|+.+++.+.  ...++.++...+.
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~  561 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM  561 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence            689999999999999999998752  2347777655443

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=90.51  E-value=0.28  Score=43.47  Aligned_cols=34  Identities=18%  Similarity=0.204  Sum_probs=25.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC--CCccEEEe
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILL  298 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~l  298 (403)
                      ...+++.+|.+||||||.+-+++...  ......++
T Consensus         7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~   42 (191)
T 1xx6_A            7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF   42 (191)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence            35799999999999999988877654  23335555

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=90.51  E-value=0.13  Score=52.12  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHhC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~  290 (403)
                      -++++|+||+|||++|+.++..+
T Consensus       203 ~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          203 NPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             EEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHHH
Confidence            35889999999999999999875

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=90.44  E-value=0.14  Score=44.33  Aligned_cols=24  Identities=29%  Similarity=0.285  Sum_probs=20.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .--|+++|.+|+||||+.+++...
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            346788999999999999999865

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=90.43  E-value=0.12  Score=53.14  Aligned_cols=33  Identities=27%  Similarity=0.224  Sum_probs=26.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEe
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILL  298 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~l  298 (403)
                      ...++++|++||||||+.+.+....+. .+.+.+
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giiti  293 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSI  293 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEE
Confidence            456899999999999999999987764 234443

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=90.40  E-value=0.13  Score=51.44  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=21.2

Q ss_pred             ceE--EEEEccCCCChhHHHHHHHHh
Q 015668          266 CEV--MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~v--ill~GlPGSGKST~A~~l~~~  289 (403)
                      .++  ++++|.+||||||+.+.++..
T Consensus        40 Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           40 GFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            466  899999999999999999754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=90.37  E-value=0.13  Score=44.79  Aligned_cols=23  Identities=43%  Similarity=0.440  Sum_probs=20.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      --|+++|.+|+||||+.+++...
T Consensus        30 ~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           30 MRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhC
Confidence            45889999999999999999743

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=90.36  E-value=0.15  Score=48.51  Aligned_cols=33  Identities=15%  Similarity=0.207  Sum_probs=25.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCC--ccEEEec
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLG  299 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls  299 (403)
                      .-|+++|.||+|||++|+.++...+.  ..++.++
T Consensus        26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~   60 (304)
T 1ojl_A           26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLN   60 (304)
T ss_dssp             SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred             CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEe
Confidence            45788999999999999999986542  2356665

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=90.34  E-value=0.14  Score=44.81  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=20.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .=|+++|.+|+||||+.+++....
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            347889999999999999998643

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=90.33  E-value=0.15  Score=50.23  Aligned_cols=49  Identities=12%  Similarity=0.187  Sum_probs=32.8

Q ss_pred             hcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 015668          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR  390 (403)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~p-e~~~~R~~~R  390 (403)
                      +.+-+.+++|-  +++.+..|+.+++.+++..   ...++++.-+ +++ .+...|
T Consensus       157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adr  211 (372)
T 1v43_A          157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA-MTMGDR  211 (372)
T ss_dssp             TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSE
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HHhCCE
Confidence            57788999998  7888888988887777642   3556555444 443 334444

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=90.26  E-value=0.49  Score=54.06  Aligned_cols=110  Identities=11%  Similarity=0.191  Sum_probs=59.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEecc--------HHHHHHhhc--------CCCcccC-CCh---HHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGT--------NLILEQMKV--------PGLLRKH-NYS---ERFQC  324 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~--------D~ir~~l~~--------~g~~~~~-~~~---~~~~~  324 (403)
                      .+.+.++|..||||||+++.+...+.. .+-+.++.        +.+|+.+..        .|..+++ .++   ...++
T Consensus       444 G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~  523 (1321)
T 4f4c_A          444 GQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREE  523 (1321)
T ss_dssp             TCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHH
T ss_pred             CcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHH
Confidence            578999999999999999999987753 34455532        345555431        0111100 000   11133


Q ss_pred             HHHHHHHH-HHHHHHHHhcCCCeEEEeC--CCCCHHHHHHHHHHHhcC-CcEEEEEE
Q 015668          325 LMGRANAI-FDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNF-RKIAVVVF  377 (403)
Q Consensus       325 ~~~~a~~~-~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~-~~~~vv~l  377 (403)
                      +.+.++.+ +.+.++ .+.+|...++-.  .+++--+|+| +..++.. .+-.++.+
T Consensus       524 v~~a~~~a~l~~~i~-~lp~G~~T~vGe~G~~LSGGQkQR-iaiARAl~~~~~IliL  578 (1321)
T 4f4c_A          524 MVAACKMANAEKFIK-TLPNGYNTLVGDRGTQLSGGQKQR-IAIARALVRNPKILLL  578 (1321)
T ss_dssp             HHHHHHHTTCHHHHH-HSTTTTSSEESSSSCCCCHHHHHH-HHHHHHHTTCCSEEEE
T ss_pred             HHHHHHHccchhHHH-cCCCCCccEecCCCCCCCHHHHHH-HHHHHHHccCCCEEEE
Confidence            33333221 223332 245666555533  7888888876 6666653 33334444

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=90.23  E-value=0.14  Score=44.94  Aligned_cols=24  Identities=25%  Similarity=0.177  Sum_probs=20.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      --|+++|.+|+||||+.+++....
T Consensus        10 ~ki~i~G~~~~GKTsli~~l~~~~   33 (212)
T 2j0v_A           10 IKCVTVGDGAVGKTCMLICYTSNK   33 (212)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            457889999999999999998643

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=90.21  E-value=0.14  Score=53.44  Aligned_cols=26  Identities=19%  Similarity=0.460  Sum_probs=23.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      ..++++|+||+||||+|+.++..++.
T Consensus        61 ~~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           61 RHVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence            57899999999999999999988763

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=90.21  E-value=0.13  Score=50.45  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=19.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~  288 (403)
                      ..=|++.|.+||||||+++++.-
T Consensus        33 ~~killlG~~~SGKST~~kq~~i   55 (362)
T 1zcb_A           33 LVKILLLGAGESGKSTFLKQMRI   55 (362)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCcHHHHHHHHHH
Confidence            45578899999999999999853

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=90.19  E-value=0.15  Score=44.57  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=19.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      --|+|+|.||+||||+..++...
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            34789999999999999999853

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=90.18  E-value=0.14  Score=50.33  Aligned_cols=49  Identities=16%  Similarity=0.293  Sum_probs=32.5

Q ss_pred             hcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 015668          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR  390 (403)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~p-e~~~~R~~~R  390 (403)
                      +.+-+.+++|-  +++.+..|+.+++.+++..   ...++++.-+ +++ .+...|
T Consensus       155 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adr  209 (372)
T 1g29_1          155 VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA-MTMGDR  209 (372)
T ss_dssp             HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSE
T ss_pred             hcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH-HHhCCE
Confidence            57788999998  7888888888877776542   3555555444 443 334444

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=90.16  E-value=0.14  Score=45.32  Aligned_cols=24  Identities=21%  Similarity=0.279  Sum_probs=20.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .--|+++|.+|+||||+.+++...
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            345788999999999999999753

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=90.15  E-value=0.13  Score=46.19  Aligned_cols=24  Identities=17%  Similarity=0.421  Sum_probs=21.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ..-|+++|.+|+||||+..++...
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456889999999999999999764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=89.99  E-value=0.14  Score=48.66  Aligned_cols=26  Identities=19%  Similarity=0.253  Sum_probs=22.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      .+++.++|++||||||+.+.+.....
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             CCeEEEECCCCCcHHHHHHHhccccc
Confidence            46889999999999999999986543

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=89.89  E-value=0.13  Score=44.42  Aligned_cols=25  Identities=32%  Similarity=0.337  Sum_probs=21.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .--|+++|.+|+||||+.+++....
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            4557899999999999999997554

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=89.85  E-value=0.12  Score=50.45  Aligned_cols=35  Identities=29%  Similarity=0.367  Sum_probs=27.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++--.+ ..+-+.++
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~   60 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD   60 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEET
T ss_pred             CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Confidence            357899999999999999999986554 33455554

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=89.82  E-value=0.17  Score=49.36  Aligned_cols=26  Identities=35%  Similarity=0.250  Sum_probs=22.4

Q ss_pred             CceEEEE--EccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMM--VGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill--~GlPGSGKST~A~~l~~~~  290 (403)
                      .+..+++  +|+||+||||+++.+++.+
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            3567888  9999999999999998765

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=89.77  E-value=0.13  Score=52.06  Aligned_cols=26  Identities=19%  Similarity=0.280  Sum_probs=22.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..++++++|++||||||+.+.++.-.
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            45789999999999999999998654

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=89.73  E-value=0.16  Score=46.59  Aligned_cols=25  Identities=16%  Similarity=0.324  Sum_probs=21.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..-|+++|.||+||||+..++....
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCC
Confidence            4568889999999999999998543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=89.63  E-value=0.54  Score=47.14  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=20.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ...|+++|.||+||||+.+++...
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            457899999999999999999753

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=89.61  E-value=0.17  Score=44.92  Aligned_cols=23  Identities=30%  Similarity=0.358  Sum_probs=20.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      -=|+++|.+++||||+.+++...
T Consensus        28 ~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           28 CKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            44778999999999999999865

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=89.58  E-value=0.16  Score=47.04  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=20.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .-|+++|.||+||||+.+++...
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            45789999999999999999864

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=89.56  E-value=0.19  Score=47.63  Aligned_cols=25  Identities=32%  Similarity=0.578  Sum_probs=21.9

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .+..|.++|.||+||||+.+++...
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3567999999999999999999864

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=89.56  E-value=0.27  Score=49.14  Aligned_cols=22  Identities=32%  Similarity=0.518  Sum_probs=19.8

Q ss_pred             EEEEEccCCCChhHHHHHHHHh
Q 015668          268 VMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~  289 (403)
                      .|+++|.|++||||+.+++...
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~   26 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGE   26 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999754

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=89.55  E-value=0.17  Score=48.55  Aligned_cols=33  Identities=15%  Similarity=0.312  Sum_probs=25.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      ..-|+++|.+|+||||+|..+.+.-    +..++-|.
T Consensus       147 g~gvli~G~sG~GKStlal~l~~~G----~~lv~DD~  179 (312)
T 1knx_A          147 GVGVLLTGRSGIGKSECALDLINKN----HLFVGDDA  179 (312)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTTT----CEEEEEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcC----CEEEeCCE
Confidence            4679999999999999999997642    45555553

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=89.46  E-value=0.19  Score=47.52  Aligned_cols=32  Identities=22%  Similarity=0.422  Sum_probs=25.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls  299 (403)
                      .++++.|++|+||||+++++.+..... ++.++
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~-~~~~~   62 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLP-YIYLD   62 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCC-EEEEE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCC-EEEEE
Confidence            489999999999999999998876432 45554

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=89.34  E-value=0.62  Score=44.15  Aligned_cols=24  Identities=13%  Similarity=0.332  Sum_probs=20.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      .+.|+|+|+   ||+|+.++|.+++|+
T Consensus       100 ~RpvVl~Gp---~K~tl~~~Ll~~~p~  123 (292)
T 3tvt_A          100 TRPVIILGP---LKDRINDDLISEYPD  123 (292)
T ss_dssp             CCCEEEEST---THHHHHHHHHHHCTT
T ss_pred             CCeEEEeCC---CHHHHHHHHHHhChh
Confidence            467888887   599999999999885

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=89.33  E-value=0.14  Score=44.08  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=19.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~  288 (403)
                      .--|+++|.+++||||+..++..
T Consensus        22 ~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           22 KIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            34588899999999999999964

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=89.21  E-value=0.19  Score=44.79  Aligned_cols=25  Identities=16%  Similarity=0.369  Sum_probs=21.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .-=|+++|.+|+||||+.+++....
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCC
Confidence            3457889999999999999998643

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=89.15  E-value=0.18  Score=43.87  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=19.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      -=|+++|.+|+||||+.+.+....
T Consensus        21 ~ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           21 PRILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            447789999999999999877643

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=89.14  E-value=0.18  Score=46.96  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=18.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~  288 (403)
                      --|+++|.+|+||||+...|..
T Consensus         9 ~~I~vvG~~g~GKSTLin~L~~   30 (274)
T 3t5d_A            9 FTLMVVGESGLGKSTLINSLFL   30 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhC
Confidence            3478999999999999999753

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=89.14  E-value=0.19  Score=48.21  Aligned_cols=27  Identities=11%  Similarity=0.177  Sum_probs=23.6

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      -+..+++.|+||+||||+|+.+++.+.
T Consensus        23 ~~~a~L~~G~~G~GKt~~a~~la~~l~   49 (334)
T 1a5t_A           23 GHHALLIQALPGMGDDALIYALSRYLL   49 (334)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cceeEEEECCCCchHHHHHHHHHHHHh
Confidence            356899999999999999999998764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=89.08  E-value=0.12  Score=50.58  Aligned_cols=34  Identities=18%  Similarity=0.195  Sum_probs=25.9

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEe
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILL  298 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~l  298 (403)
                      ..+++.++|++||||||+.+.++--.+ ..+-+.+
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i   64 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF   64 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence            357899999999999999999986544 2334444

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=89.03  E-value=0.18  Score=47.92  Aligned_cols=20  Identities=30%  Similarity=0.423  Sum_probs=17.9

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q 015668          269 MMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~  288 (403)
                      |+++|.+|+||||+.+.+..
T Consensus        21 I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           21 LMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             EEEEEETTSSHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            48899999999999999764

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=89.02  E-value=0.2  Score=51.57  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=21.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~  288 (403)
                      ...+|.++|++|.||||+|.+++.
T Consensus       146 ~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          146 EPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Confidence            468999999999999999998853

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=88.90  E-value=0.27  Score=41.54  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=19.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~  288 (403)
                      +.+.+++|+.||||||+...+.-
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45889999999999999888753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=88.79  E-value=0.24  Score=51.11  Aligned_cols=41  Identities=17%  Similarity=0.165  Sum_probs=30.1

Q ss_pred             HhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC-cEEEEEECCh
Q 015668          340 ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR-KIAVVVFPKP  380 (403)
Q Consensus       340 al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p  380 (403)
                      .+.+-+.+|+|-  +++....+..+++.+.++. ...++++.-.
T Consensus       153 L~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHd  196 (538)
T 3ozx_A          153 LLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHD  196 (538)
T ss_dssp             HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence            357888999996  7888888888777776653 4666666554

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=88.77  E-value=0.27  Score=47.13  Aligned_cols=33  Identities=18%  Similarity=0.151  Sum_probs=26.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      ..-|+++|.+|+||||+|..+...-    +..++-|.
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~g----~~lv~dD~  176 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKRG----HRLVADDN  176 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTT----CEEEESSE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhcC----CceecCCe
Confidence            4789999999999999999998753    34454443

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=88.74  E-value=0.2  Score=51.34  Aligned_cols=26  Identities=19%  Similarity=0.457  Sum_probs=22.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..++++++|.|||||||+++.++...
T Consensus       280 ~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          280 KDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            36899999999999999999987543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=88.55  E-value=0.1  Score=45.33  Aligned_cols=23  Identities=17%  Similarity=0.267  Sum_probs=4.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      --|+++|.+|+||||+..++...
T Consensus        21 ~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEC-----------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45788999999999999999765

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=88.53  E-value=0.23  Score=44.55  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=19.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~  288 (403)
                      -=|+|+|.||+||||+..++..
T Consensus        38 ~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           38 YRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4488999999999999999974

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=88.51  E-value=0.29  Score=50.38  Aligned_cols=24  Identities=25%  Similarity=0.356  Sum_probs=22.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~  288 (403)
                      ...+|.++|++|.||||+|+++++
T Consensus       151 ~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          151 DSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999999999985

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=88.48  E-value=0.094  Score=50.24  Aligned_cols=25  Identities=12%  Similarity=0.194  Sum_probs=21.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .++++++|.||+||||+.+.+....
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CCEEEEECCCCCCHHHHHHHhcccc
Confidence            4689999999999999999997544

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=88.45  E-value=0.26  Score=49.19  Aligned_cols=25  Identities=16%  Similarity=0.158  Sum_probs=21.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..++.++|.+||||||+.+.+..-.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCC
Confidence            4489999999999999999998743

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=88.44  E-value=0.27  Score=46.63  Aligned_cols=25  Identities=24%  Similarity=0.334  Sum_probs=21.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .+-.|+++|.|++||||+.+++...
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3557999999999999999999864

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=88.26  E-value=0.22  Score=53.34  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=20.4

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      ++++|+||+|||++|+.+++.+
T Consensus       204 vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          204 PVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             EEEESCTTTTTHHHHHHHHHHH
T ss_pred             eEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=88.24  E-value=0.24  Score=51.12  Aligned_cols=41  Identities=15%  Similarity=0.158  Sum_probs=29.7

Q ss_pred             HhcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEECCh
Q 015668          340 ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP  380 (403)
Q Consensus       340 al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p  380 (403)
                      .+.+-+.+|+|-  +++....++.+++.++++.  ...++++.-+
T Consensus       173 L~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd  217 (538)
T 1yqt_A          173 LLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD  217 (538)
T ss_dssp             HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            357888999996  7888888888777776542  4666666554

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=88.05  E-value=0.14  Score=45.40  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=18.0

Q ss_pred             eEEEEEccCCCChhHHHHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWV  287 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~  287 (403)
                      -=|+++|.+|+||||+.+++.
T Consensus        16 ~ki~v~G~~~~GKSsli~~~~   36 (221)
T 3gj0_A           16 FKLVLVGDGGTGKTTFVKRHL   36 (221)
T ss_dssp             EEEEEEECTTSSHHHHHTTBH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            457889999999999999944

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=88.03  E-value=0.28  Score=48.50  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=21.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~  288 (403)
                      ....+.++|+||+||||+.+.+..
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC
Confidence            457899999999999999999987

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=88.01  E-value=0.25  Score=45.73  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=19.8

Q ss_pred             EEEEEccCCCChhHHHHHHHHh
Q 015668          268 VMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~  289 (403)
                      -|+++|.|++||||+.+++...
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4789999999999999999765

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=87.82  E-value=0.14  Score=53.40  Aligned_cols=25  Identities=16%  Similarity=0.357  Sum_probs=22.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      =|+|+|.||+|||++|+.+++..+.
T Consensus       329 ~vLL~GppGtGKT~LAr~la~~~~r  353 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISRVAPR  353 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSSTTCSC
T ss_pred             ceEEECCCchHHHHHHHHHHHhCCC
Confidence            4789999999999999999988763

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=87.82  E-value=0.28  Score=52.44  Aligned_cols=36  Identities=14%  Similarity=0.127  Sum_probs=28.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i  303 (403)
                      --++++|+||+|||++|+.+++.+. ..++.++...+
T Consensus       489 ~~~ll~G~~GtGKT~la~~la~~l~-~~~~~i~~s~~  524 (758)
T 1r6b_X          489 GSFLFAGPTGVGKTEVTVQLSKALG-IELLRFDMSEY  524 (758)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT-CEEEEEEGGGC
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhc-CCEEEEechhh
Confidence            3689999999999999999998874 34666755443

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=87.82  E-value=0.12  Score=45.87  Aligned_cols=25  Identities=16%  Similarity=0.195  Sum_probs=21.2

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ..-|+++|.+|+||||+..++....
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            4557789999999999999998653

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=87.74  E-value=0.26  Score=45.56  Aligned_cols=24  Identities=21%  Similarity=0.282  Sum_probs=20.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .--|+++|.|++||||+..++...
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            345889999999999999999864

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=87.69  E-value=0.26  Score=46.05  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=20.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .-|+|+|.||+||||+.+++...
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            45889999999999999999864

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=87.66  E-value=0.56  Score=47.14  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=22.8

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHh
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ....+.++.|.|||||||+..+++..
T Consensus       159 ~~~~v~~I~G~aGsGKTt~I~~~~~~  184 (446)
T 3vkw_A          159 SSAKVVLVDGVPGCGKTKEILSRVNF  184 (446)
T ss_dssp             CCSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred             ccccEEEEEcCCCCCHHHHHHHHhcc
Confidence            45799999999999999999988753

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=87.54  E-value=0.32  Score=46.93  Aligned_cols=34  Identities=15%  Similarity=0.329  Sum_probs=24.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHhC----CCccEEEeccH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTN  301 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~----~~~~~v~ls~D  301 (403)
                      ++++.|.||+||||++-+++...    +....+.|++.
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E   67 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE   67 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence            68999999999999987775433    12345667654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=87.44  E-value=0.25  Score=51.01  Aligned_cols=50  Identities=12%  Similarity=0.156  Sum_probs=34.4

Q ss_pred             hcCCCeEEEeC--CCCCHHHHHHHHHHHhcC---CcEEEEEECChHHHHHHHHHh
Q 015668          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNF---RKIAVVVFPKPEDLKIRSVKR  390 (403)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~---~~~~vv~l~~pe~~~~R~~~R  390 (403)
                      +.+-+.+|+|-  +++....|..+++.+.+.   ....++++..+-....+...|
T Consensus       401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDr  455 (538)
T 3ozx_A          401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADR  455 (538)
T ss_dssp             HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred             HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence            57888999998  778888888877777654   246666666653344555555

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=87.44  E-value=0.29  Score=48.00  Aligned_cols=21  Identities=33%  Similarity=0.539  Sum_probs=18.8

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |.++|+||+||||+.+.+...
T Consensus         4 v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            4 VGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             EEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            678999999999999998764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=87.36  E-value=0.29  Score=50.89  Aligned_cols=35  Identities=26%  Similarity=0.298  Sum_probs=27.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls  299 (403)
                      ..+++.++|++||||||+.+.++.-.+ ..+-+.++
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~  403 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMD  403 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEET
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEEC
Confidence            357899999999999999999987664 23445553

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=87.21  E-value=0.26  Score=49.47  Aligned_cols=23  Identities=17%  Similarity=0.222  Sum_probs=20.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHhC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .+++.|.||+||||++..+...+
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            88999999999999998887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	403
d2fnja1	217	b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophi	2e-18
d2afja1	213	b.29.1.22 (A:12-224) SPRY domain-containing SOCS b	1e-15
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	3e-06
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	2e-05
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	0.002

>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: LD34464p
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 81.0 bits (199), Expect = 2e-18
 Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 13/151 (8%)

Query: 46  LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP---- 101
            N  D  L+  ++++   +   H+   A      R  VG+  G + +     + Q     
Sbjct: 26  WNSEDRSLNIFVKEDDKLT--FHRHPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHA 83

Query: 102 ---VDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFG 158
              V   D P        +  S  +   G      + +              L   E F 
Sbjct: 84  VVGVCTADAPLHSVGYQSLVGST-EQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFL 142

Query: 159 VGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
           V D  + A+D++     T+ F  + ++LG A
Sbjct: 143 VPDKFLVALDMDEG---TLSFIVDQQYLGIA 170

>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 213

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: SPRY domain-containing SOCS box protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.0 bits (178), Expect = 1e-15
 Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 15/165 (9%)

Query: 32  SSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYC 91
           S+       ++    NP DC  + D+++ GL      +   A    G R   G + G + 
Sbjct: 23  SAPPPDLVAQRHHGWNPKDCSENIDVKEGGLC---FERRPVAQSTDGVRGKRGYSRGLHA 79

Query: 92  FGCKIVSTQP-------VDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKF 144
           +       Q        V     P    H   +  S  +                  G  
Sbjct: 80  WEISWPLEQRGTHAVVGVATALAPLQADHYAALLGSNSESWGWD--IGRGKLYHQSKGLE 137

Query: 145 SHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
           +        GE+  V + ++  +D+E     T+G++  G +LG A
Sbjct: 138 APQYPAGPQGEQLVVPERLLVVLDMEEG---TLGYSIGGTYLGPA 179

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 44.7 bits (104), Expect = 3e-06
 Identities = 22/130 (16%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERF 322
           MK  ++++ +G P SGK+TWA +++  +P   +  +  +   + +       ++ Y+++ 
Sbjct: 1   MK--KIILTIGCPGSGKSTWAREFIAKNP--GFYNINRDDYRQSIMAHEERDEYKYTKKK 56

Query: 323 QCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARK--RKLRLFVNFRKIAVVVFPKP 380
           + ++          +     + +  II  TN+    R           ++    V     
Sbjct: 57  EGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPW 116

Query: 381 EDLKIRSVKR 390
            +L  R+ KR
Sbjct: 117 TELVKRNSKR 126

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 29/128 (22%)

Query: 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQC 324
           + EV++ VG P +GK+T+ ++ +                           +       +C
Sbjct: 13  NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV------------------NRDTLGSWQRC 54

Query: 325 LMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLF--VNFRKIAVVVFPKPED 382
           +     A+         R  +  +ID TN    +R R ++                  E 
Sbjct: 55  VSSCQAAL---------RQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQ 105

Query: 383 LKIRSVKR 390
            +  +  R
Sbjct: 106 ARHNNRFR 113

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 268 VMMMVGLPASGKTTWAEKWVK 288
           +++MVGLPA GKT  ++K  +
Sbjct: 4   LIVMVGLPARGKTYISKKLTR 24

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	403
d2fnja1	217	LD34464p {Fruit fly (Drosophila melanogaster) [Tax	99.95
d2afja1	213	SPRY domain-containing SOCS box protein 2 {Mouse (	99.94
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.78
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.7
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.45
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.36
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.25
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.24
d2fbea1	188	Similar to Ret finger protein-like 1 {Human (Homo	99.2
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.18
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.18
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.12
d2iwgb1	179	52 kDa Ro protein {Human (Homo sapiens) [TaxId: 96	99.06
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	99.04
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.81
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.78
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.75
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	98.73
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.72
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.7
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.67
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.63
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	98.63
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.6
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	98.59
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.53
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.52
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.45
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.43
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.42
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.34
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.32
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	98.26
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.24
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.18
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.08
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.07
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.98
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.92
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.9
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.89
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.77
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.75
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.59
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.46
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	97.45
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.41
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.34
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.31
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.28
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.26
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.18
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.12
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.08
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	96.99
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.98
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.94
d1okkd2	207	GTPase domain of the signal recognition particle r	96.92
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.91
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.89
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.84
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.82
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.8
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.7
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.6
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.52
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.51
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.49
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.46
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.32
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.31
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.31
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.26
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.25
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.25
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.18
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.07
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.97
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.93
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.92
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.84
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	95.81
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.81
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.78
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.73
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.71
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.56
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	95.5
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.27
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.23
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.21
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.16
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.09
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.06
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.02
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	94.96
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.65
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.63
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.55
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.54
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.51
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.46
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.34
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	94.21
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.19
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.13
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.11
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.09
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.08
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.04
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	94.02
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.94
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.91
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.89
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.83
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	93.79
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.75
d1nrjb_	209	Signal recognition particle receptor beta-subunit	93.75
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.72
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.68
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	93.5
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	93.48
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.46
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.39
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.37
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	93.33
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	93.32
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	93.31
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	93.3
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	93.25
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	93.2
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	93.09
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	93.09
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.08
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.08
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.06
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.03
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	93.03
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	93.01
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.99
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.99
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.99
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	92.98
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	92.97
d1g2912	240	Maltose transport protein MalK, N-terminal domain	92.96
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	92.95
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	92.95
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	92.95
d2fh5b1	207	Signal recognition particle receptor beta-subunit	92.9
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	92.87
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	92.83
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	92.82
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	92.77
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	92.77
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	92.76
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	92.74
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	92.68
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	92.66
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	92.65
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	92.61
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	92.61
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	92.57
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	92.51
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	92.5
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	92.5
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	92.45
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	92.42
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	92.32
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	92.29
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	92.25
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	92.14
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	92.11
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	92.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	91.89
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.88
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	91.85
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	91.79
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	91.73
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	91.65
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	91.63
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.6
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	91.58
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	91.44
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	91.41
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	91.4
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	91.34
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	91.33
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	91.25
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	91.12
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	91.11
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	91.06
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	91.04
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	91.01
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	90.99
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	90.92
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	90.85
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	90.82
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	90.75
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	90.72
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	90.7
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	90.62
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	90.52
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	90.49
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	90.46
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	90.2
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	90.19
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	90.15
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	90.13
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	90.01
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	89.85
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	89.78
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	89.61
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	89.26
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	88.62
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	88.59
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	88.2
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	88.04
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	88.03
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	87.56
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	87.1
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	87.05
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	86.9
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	86.53
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	86.35
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	86.03
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	85.21
d1tuea_	205	Replication protein E1 helicase domain {Human papi	84.48
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	84.47
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	84.41
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	83.88
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	83.66
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	83.63
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	82.81
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	82.79
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	82.79
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	82.39
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	81.97
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	80.76
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	80.68
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	80.63

>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: LD34464p
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=2.2e-28  Score=224.70  Aligned_cols=162  Identities=22%  Similarity=0.294  Sum_probs=133.0

Q ss_pred             CCcEEeCcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEe
Q 015668           41 KQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS  120 (403)
Q Consensus        41 ~~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s  120 (403)
                      +..++||+.|++.++.|++|++.+...  +....+|++||++.|+.+|+|||||+|....          ....+.|||+
T Consensus        21 ~~~~~wn~~~~~~~~~ls~~~~~~~~~--~~~~~~~~~vrgt~g~ssGk~YWEV~v~~~~----------~~~~~~IGV~   88 (217)
T d2fnja1          21 QLKHSWNSEDRSLNIFVKEDDKLTFHR--HPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQ----------RGTHAVVGVC   88 (217)
T ss_dssp             HHHTSEEEEEECTTEEEETTEEEEEEE--CCCTTEEEEEEESCCBCSSEEEEEEECCGGG----------CTTCCEEEEE
T ss_pred             cccccCChhcCCCCEEEeCCCceEEEe--CCccccCCeEEEcccccCCcEEEEEEEecCC----------CCCeeEEEEE
Confidence            345689999999999999999776432  2345789999999999999999999998642          2356889999


Q ss_pred             cCCCC------CCCCCCCCcceeEec-CCceeeCCCc---------ccCCCCCCCCCEEEEEEecCCCCCceEEEEeCcc
Q 015668          121 RGDDP------VGKLGETEQSFGFGG-TGKFSHGGNF---------LNFGEKFGVGDTIICAIDLESKPLATIGFAKNGK  184 (403)
Q Consensus       121 ~~~~~------~~~lG~d~~Sygy~~-~G~~~~~~~~---------~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~  184 (403)
                      +...+      ...+|.+.+||+|.. +|.++|++..         ..||++|..||||||+||++.   ++|+|+|||+
T Consensus        89 ~~~~~~~~~~~~~~~G~~~~s~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~gDvIGV~LD~d~---gtLsF~kNG~  165 (217)
T d2fnja1          89 TADAPLHSVGYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDE---GTLSFIVDQQ  165 (217)
T ss_dssp             CTTSCSEEESSCCCTTSSTTEEEEETTTTEEEESTTTSCCEESSTTCCTTCCCCCCSEEEEEEETTT---TEEEEEETTE
T ss_pred             ecccCcccCCccccccCCCCcceEecCCCEEEecCCCccccccCcccccCCccCCCCEEEEEEeCCC---CEEEEEECCE
Confidence            97653      346899999999974 6788887643         358899999999999999999   8999999999


Q ss_pred             cccccccccCCCCCCccccchhhcccCCCceEeEEEEe--CeEEEEEccCCC
Q 015668          185 WLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQFSVEQ  234 (403)
Q Consensus       185 ~lg~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~--~~~v~~nFG~~~  234 (403)
                      +||+||+.   +              ....|||+|+..  +++|+++|....
T Consensus       166 ~lGvAf~~---l--------------~~~~lyP~vs~~~~~~~v~~~~~~~~  200 (217)
T d2fnja1         166 YLGIAFRG---L--------------RGKKLYPIVSAVWGHCEITMRYIGGL  200 (217)
T ss_dssp             EEEEEECC---C--------------TTCCBEEEEEECCTTCEEEEEEEEEE
T ss_pred             EeeEEEeC---C--------------CCCeEEEEEEeccCCcEEEEEEcCCc
Confidence            99999972   1              145899999975  789999986553

>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: SPRY domain-containing SOCS box protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=8.3e-28  Score=220.18  Aligned_cols=160  Identities=24%  Similarity=0.389  Sum_probs=128.7

Q ss_pred             CCcEEeCcCCCCCCeEEcCCCceEEecCCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEe
Q 015668           41 KQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS  120 (403)
Q Consensus        41 ~~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rVG~s  120 (403)
                      ...+.|||.|++.++.|++++|+++..   +...+|.++|++.++.+|||||||+|....          ....++|||+
T Consensus        32 ~~~~~wnp~~~~~~i~ls~g~l~~~~~---~~~~~~~~v~gt~~~ssGk~YwEv~i~~~~----------~~~~~~iGv~   98 (213)
T d2afja1          32 QRHHGWNPKDCSENIDVKEGGLCFERR---PVAQSTDGVRGKRGYSRGLHAWEISWPLEQ----------RGTHAVVGVA   98 (213)
T ss_dssp             HHHHSSCCSSSCCSSEEETTTTEEECS---SCTTTSSSEEECCCCCCSEEEEEEECCCCS----------SSCCCEEEEE
T ss_pred             cccccCChhhcCCCeEEeCCCeEEEeC---CccCccccEEECccccCCcEEEEEEEeccC----------CcceEEEeEe
Confidence            445669999999999999999998753   335789999999999999999999997542          3457899999


Q ss_pred             cCCCC------CCCCCCCCcceeEe-cCCceeeCC--------CcccCCCCCCCCCEEEEEEecCCCCCceEEEEeCccc
Q 015668          121 RGDDP------VGKLGETEQSFGFG-GTGKFSHGG--------NFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKW  185 (403)
Q Consensus       121 ~~~~~------~~~lG~d~~Sygy~-~~G~~~~~~--------~~~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftkNG~~  185 (403)
                      +.+.+      ...+|.+.+||+|. ..|.+++.+        ....||.+|..||||||+||++.   ++|+|+|||++
T Consensus        99 ~~~~~~~~~~~~~~~G~~~~s~g~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~gDvIGvaLD~d~---g~i~F~kNG~~  175 (213)
T d2afja1          99 TALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEE---GTLGYSIGGTY  175 (213)
T ss_dssp             ESSCCCSSCSSSCCCCCSCEEEEEEGGGTSTTSSSSCCSCSSSSCCSGGGGSCCSSCEEEEEETTT---TEEEEESTTCS
T ss_pred             ecccCccccCcccccccccCCcccccccceEeecccccccCCcCcCccCcccCCCCEEEEEEeCCC---CEEEEEECCEE
Confidence            86543      23589999999996 345555433        23578899999999999999999   89999999999


Q ss_pred             ccccccccCCCCCCccccchhhcccCCCceEeEEEEe--CeEEEEEccCC
Q 015668          186 LGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQFSVE  233 (403)
Q Consensus       186 lg~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~--~~~v~~nFG~~  233 (403)
                      ||+||+.-                 ....|||+|+..  +++|.++|=++
T Consensus       176 lG~af~~l-----------------~~~~lyP~vs~~~g~~~~~~~~~~~  208 (213)
T d2afja1         176 LGPAFRGL-----------------KGRTLYPSVSAVWGQCQVRIRYMGE  208 (213)
T ss_dssp             CSTTHHHH-----------------HHHCCEEEEEECCTTSCCEEEEESC
T ss_pred             eeeeEECC-----------------CCCeEEEEEEEecCCcEEEEEECcc
Confidence            99999721                 135899999974  88888887443

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=2.8e-19  Score=157.49  Aligned_cols=110  Identities=19%  Similarity=0.187  Sum_probs=88.3

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT  343 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~  343 (403)
                      +.|.+|||||+|||||||||++|+..+.   +.+||.|.++..                ..+.        ..+..++++
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~~---~~~i~~D~~~~~----------------~~~~--------~~~~~~l~~   64 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSAG---YVHVNRDTLGSW----------------QRCV--------SSCQAALRQ   64 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGGT---CEEEEHHHHCSH----------------HHHH--------HHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcC---CEEEchHHHHHH----------------HHHH--------HHHHHHHHC
Confidence            4689999999999999999999988876   889999975321                1121        233445689


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhccc--cCccccc
Q 015668          344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKE--MGKEQIM  400 (403)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~~--~g~~Vp~  400 (403)
                      |.+||+|+||.+++.|+.+++.+++++ ++.+|+|++| ++|++||.+|...  .+..||+
T Consensus        65 g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R~~~~~~~~~v~~  125 (172)
T d1yj5a2          65 GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSD  125 (172)
T ss_dssp             TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCH
T ss_pred             CCCceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHhcccCcccCccHH
Confidence            999999999999999999999888877 8889999998 8999999999743  2334554

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.70  E-value=4.9e-17  Score=138.23  Aligned_cols=121  Identities=20%  Similarity=0.318  Sum_probs=86.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhc---C
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR---T  343 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~---~  343 (403)
                      ++|+|+|+|||||||+|++|.++...  +.+++.|+++..+..........+.....   ..+......++..+++   .
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~   77 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYRQSIMAHEERDEYKYTKKKE---GIVTGMQFDTAKSILYGGDS   77 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHHHHHHTTSCCGGGCCCCHHHH---HHHHHHHHHHHHHHHTSCSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCC--CEEechHHHHHHHhcccchhhhhhhhhhh---HHHHHHHHHHHHHHHHhhcc
Confidence            68999999999999999999887764  88999999988764322211112222111   1122222233333434   4


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      +.++|+|++|..+..|..+.+.+..++ ++.+|++++| +++++|+.+|..
T Consensus        78 ~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~  128 (152)
T d1ly1a_          78 VKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT  128 (152)
T ss_dssp             CCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG
T ss_pred             CCCcccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHccCC
Confidence            568999999999999998888777776 8888999998 899999999963

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=1.1e-12  Score=116.52  Aligned_cols=126  Identities=16%  Similarity=0.023  Sum_probs=82.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHHhhcCCCc-cc-CCChH-HHHHHHHHHHHHHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLL-RK-HNYSE-RFQCLMGRANAIFDVLLSRA  340 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~l~~~g~~-~~-~~~~~-~~~~~~~~a~~~~~~ll~~a  340 (403)
                      |.+|+|+|+|||||||+|++|++.+..  ....+++.|.+|..+...... .. ..... ......+.+...+..++..+
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFL   81 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhhccccccccccccccccchhhHHHHHHHHHHHHHHHH
Confidence            689999999999999999999976642  236789999998876421110 00 11111 11222222223334444333


Q ss_pred             -hcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668          341 -SRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       341 -l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                       ...+..+|+|++|.++..|+.+.+.+.... .+.++.+.++ +++++++..+.
T Consensus        82 ~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (213)
T d1bifa1          82 SEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQV  135 (213)
T ss_dssp             HTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHH
T ss_pred             HhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHHHHHHHhHHHH
Confidence             456889999999999999998777776665 5666777775 67777766543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.36  E-value=2.5e-12  Score=109.79  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=79.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN  346 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~  346 (403)
                      .+|+++|+|||||||+|++|++.++.  ..+++.|.+++.+. .+.......    +.......+.+..++..++..+.+
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~--~~~~~~d~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~   75 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDN--SAYIEGDIINHMVV-GGYRPPWES----DELLALTWKNITDLTVNFLLAQND   75 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSS--EEEEEHHHHHTTCC-TTCCCGGGC----HHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCC--CEEEehHHHHHHHh-ccccchhHH----HHHHHHHHHHHHHHHHHHHhcCCC
Confidence            68999999999999999999999874  56788898887643 121111111    111112222334455566789999


Q ss_pred             EEEeCCCCCHHHHHHHHHHHh-cCC--cEEEEEECCh-HHHHHHHHHhcc
Q 015668          347 FIIDQTNVFKSARKRKLRLFV-NFR--KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       347 vIlD~Tn~~~~~R~~~~~~~~-~~~--~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      +|+|.+......+. +...+. ...  .+.++++.++ +++.+|+.+|..
T Consensus        76 ~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~  124 (176)
T d2bdta1          76 VVLDYIAFPDEAEA-LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKK  124 (176)
T ss_dssp             EEEESCCCHHHHHH-HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC
T ss_pred             cccccccccHHHHH-HHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCC
Confidence            99999877766654 333333 233  4566788876 899999999864

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.25  E-value=1.5e-11  Score=110.61  Aligned_cols=119  Identities=18%  Similarity=0.119  Sum_probs=83.1

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC---CccEEEeccHHHHHHhhcCCCcccCCChH-HHHHHHHHHHHHHHHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSR  339 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~---~~~~v~ls~D~ir~~l~~~g~~~~~~~~~-~~~~~~~~a~~~~~~ll~~  339 (403)
                      +...+|+|+|+|||||||+|+.|.+.+.   ....++++.|.+|+.+..     +..|+. .......++    ..+...
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~~-----~l~ys~~~r~~~~~r~----~~~a~~   92 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNK-----DLGFSEADRNENIRRI----AEVAKL   92 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTT-----TCCSSHHHHHHHHHHH----HHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhcC-----CCCCChhHHHHHHHHH----HHHHHH
Confidence            4578999999999999999999986542   123788999999986531     112332 122222222    234444


Q ss_pred             HhcCCCeEEEeCCCCCHHHHHHHHHHHh------cCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668          340 ASRTPRNFIIDQTNVFKSARKRKLRLFV------NFR-KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~------~~~-~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      +...|..+|++.+......|...-+.+.      +.. .+..||+.+| ++|.+|+.++.
T Consensus        93 ~~~~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~  152 (208)
T d1m7ga_          93 FADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGL  152 (208)
T ss_dssp             HHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCH
T ss_pred             HhccCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhcccc
Confidence            5689999999999999999975433332      122 6778999998 89999987764

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.24  E-value=2.9e-11  Score=103.48  Aligned_cols=126  Identities=15%  Similarity=0.129  Sum_probs=81.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcC--CCc-c-cCCCh-HHH-HHHHHHHHHHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVP--GLL-R-KHNYS-ERF-QCLMGRANAIFDVLLSR  339 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~--g~~-~-~~~~~-~~~-~~~~~~a~~~~~~ll~~  339 (403)
                      .++|+|+|+|||||||+|+.|++.++. .+++++.|.++..+...  ... . ..... ... ......+.+.+...+..
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPE-PWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA   81 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSS-CEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCC-CeEEeecchhhccccccccchhHHhhhhcccchhHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999999874 36778888776654210  100 0 00000 000 00111222233344455


Q ss_pred             HhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668          340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      .+..+.++|+|.+..........+..+.....+.+|++.++ +++.+|+..|..
T Consensus        82 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~R~~  135 (178)
T d1qhxa_          82 MARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGD  135 (178)
T ss_dssp             HHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSS
T ss_pred             HHhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHHHhcCC
Confidence            56889999999988777665555555554347788889887 899999998853

>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: Similar to Ret finger protein-like 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.5e-10  Score=102.24  Aligned_cols=145  Identities=12%  Similarity=0.054  Sum_probs=99.7

Q ss_pred             cEEeCcCCCCCCeEEcCCCceEEec--------CCCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCc
Q 015668           43 RVVLNPADCDLDFDIEDNGLKSSGL--------HQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHV  114 (403)
Q Consensus        43 ~v~l~~~d~~~~l~is~d~l~~~~~--------~~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~  114 (403)
                      .++||+...+..|.||+|+.+++..        +.+.|. .+..|.++.++.+|++||||.|.+             ...
T Consensus        11 dvtLDp~TAh~~L~lS~d~~~V~~~~~~~~~p~~p~rF~-~~~~VLg~~~fssGrHYWEV~V~~-------------~~~   76 (188)
T d2fbea1          11 DMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFD-TALCVLGTPRFTSGRHYWEVDVGT-------------SQV   76 (188)
T ss_dssp             CCCEETTTCCTTEEECTTSSEEEECSSCCCCCCCTTSCS-SSCEEEESCCBSSSEEEEEEECTT-------------CSE
T ss_pred             eeEcCCCCCCCCEEEccCCcEEEECCcCCCCCCCccccc-ceeeccccccccCCCEEEEEEeee-------------CCe
Confidence            4789999999999999999887532        233443 367899999999999999999863             357


Q ss_pred             EEEEEecCCCC---CCCCCCCCcceeEe-cCCcee--eCCCcccCCCCCCCCCEEEEEEecCCCCCceEEEEe--Ccccc
Q 015668          115 CRVGTSRGDDP---VGKLGETEQSFGFG-GTGKFS--HGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAK--NGKWL  186 (403)
Q Consensus       115 ~rVG~s~~~~~---~~~lG~d~~Sygy~-~~G~~~--~~~~~~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftk--NG~~l  186 (403)
                      +.||++.....   ...++.+..+|.+. .+|..+  |++....--. -..-..||++||++.   ++|+|+-  +++.|
T Consensus        77 w~vGV~~~sv~Rk~~~~~~~~~~~w~l~~~~~~~~~~~~~~~~~l~~-~~~~~rVGV~LDye~---G~lSFyn~~~~~~L  152 (188)
T d2fbea1          77 WDVGVCKESVNRQGKIELSSEHGFLTVGCREGKVFAASTVPMTPLWV-SPQLHRVGIFLDVGM---RSIAFYNVSDGCHI  152 (188)
T ss_dssp             EEEEEEETTSCCSSCCCCCTTTTEEEEEEETTTEEEECSSSCEEECC-CTTCCEEEEEEETTT---TEEEEEETTTTEEE
T ss_pred             EEEEEEeCCcCcCcccccCCCCCCEEEEecCCcEEEecCCCceeecc-CCCCCEEEEEEEcCC---CEEEEEeCCCCcEE
Confidence            99999986543   23455666788875 455443  3433322111 134579999999998   8999873  33333


Q ss_pred             cccccccCCCCCCccccchhhcccCCCceEeEEEEe
Q 015668          187 GTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK  222 (403)
Q Consensus       187 g~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~  222 (403)
                      -+ |. ..+               ..+++||++++.
T Consensus       153 ~t-F~-~~~---------------F~~pl~P~F~~~  171 (188)
T d2fbea1         153 YT-FI-EIP---------------VCEPWRPFFAHK  171 (188)
T ss_dssp             EE-EC-SCC---------------CSSCEEEEEEEE
T ss_pred             EE-EC-CCC---------------CCCCEeCeEECc
Confidence            22 21 111               156899999985

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.18  E-value=8.7e-11  Score=100.64  Aligned_cols=118  Identities=14%  Similarity=0.092  Sum_probs=76.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~  345 (403)
                      .++|+|+|+|||||||+|+.|++.++. .++.++.|.++..+...... ..  ..................+...+..+.
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~lg~-~~~~~~~d~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLPGV-PKVHFHSDDLWGYIKHGRID-PW--LPQSHQQNRMIMQIAADVAGRYAKEGY   79 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCSSS-CEEEECTTHHHHTCCSSCCC-TT--SSSHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC-CEEEecHHHHHHHHhcCCcc-cc--cchhhhHHHHHHHHHHHHHHHHHhcCC
Confidence            589999999999999999999988753 47889999988765422211 11  111111111222223344555568899


Q ss_pred             eEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          346 NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       346 ~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      ++|+|.+.. +..+.    .+.... ...++++.++ +++.+|+.+|..
T Consensus        80 ~vi~~~~~~-~~~~~----~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~  123 (176)
T d1zp6a1          80 FVILDGVVR-PDWLP----AFTALARPLHYIVLRTTAAEAIERCLDRGG  123 (176)
T ss_dssp             EEEECSCCC-TTTTH----HHHTTCSCEEEEEEECCHHHHHHHHHTTCT
T ss_pred             CeEeccccc-HHHHH----HHHhcccccccccCCCCHHHHHHHHHhCCC
Confidence            999998643 33222    233333 5666778775 899999999964

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=3.4e-11  Score=103.05  Aligned_cols=117  Identities=12%  Similarity=0.151  Sum_probs=76.2

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCCh-HHHHHHHHHHHHHHHHHHHHHhc
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYS-ERFQCLMGRANAIFDVLLSRASR  342 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~-~~~~~~~~~a~~~~~~ll~~al~  342 (403)
                      ++..+++|+|+|||||||+|+.|++.+.   +..++.|.++.............+. .......    ..+...+...+.
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~   76 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLH---AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWL----QALNDAAFAMQR   76 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT---CEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHH----HHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeechhhhhHHHHhhhhccCcceehhhhHHHH----HHHHHHHHHHHh
Confidence            4679999999999999999999999986   5677778754332110000001111 1111111    122233444557


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhc
Q 015668          343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      .+..++++........|..    +.... .+.+|+|++| +++++|+.+|.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~l~~~~e~~~~Rl~~R~  123 (171)
T d1knqa_          77 TNKVSLIVCSALKKHYRDL----LREGNPNLSFIYLKGDFDVIESRLKARK  123 (171)
T ss_dssp             HCSEEEEECCCCSHHHHHH----HHTTCTTEEEEEEECCHHHHHHHHHTST
T ss_pred             ccCceEeeccchHHHHHHH----HHHhCCCceEEeecCCHHHHHHHHHhCc
Confidence            7888999988887765542    44444 7888899987 89999999985

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.12  E-value=5.9e-10  Score=97.81  Aligned_cols=122  Identities=20%  Similarity=0.265  Sum_probs=75.5

Q ss_pred             CCCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHHHH-----HHHHHHH
Q 015668          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGRA-----NAIFDVL  336 (403)
Q Consensus       263 ~~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~~a-----~~~~~~l  336 (403)
                      .+.|.+|+++|+|||||||+|+.|++.+.   +.+|+++++ |+.+. .+.    ..........+.-     ......+
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~g---~~~i~~g~~~r~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~   74 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDFG---WVHLSAGDLLRQEQQ-SGS----KDGEMIATMIKNGEIVPSIVTVKLL   74 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHH-TTC----TTHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHC---CceEchhhHHHHHhh-hhh----hhhhhhhhHhhhccccchHHHHHHH
Confidence            34689999999999999999999999886   788999765 44432 221    0111111111100     0001111


Q ss_pred             HHH-HhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          337 LSR-ASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       337 l~~-al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      ... .....+.+|+|....+...+..+.+...... ...+++++++ +++.+|+.+|..
T Consensus        75 ~~~~~~~~~~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~  133 (194)
T d1qf9a_          75 KNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE  133 (194)
T ss_dssp             HHHHHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT
T ss_pred             HHHhhhhhcCCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhcc
Confidence            111 2345568999998888876664433333333 4567889987 899999988764

>d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: 52 kDa Ro protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.9e-09  Score=94.28  Aligned_cols=146  Identities=10%  Similarity=0.038  Sum_probs=100.2

Q ss_pred             cEEeCcCCCCCCeEEcCCCceEEecC--------CCCcccceeeEEecceecCCEEEEEEEEEeecCCCCCCCCCCCCCc
Q 015668           43 RVVLNPADCDLDFDIEDNGLKSSGLH--------QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHV  114 (403)
Q Consensus        43 ~v~l~~~d~~~~l~is~d~l~~~~~~--------~~~~~~~~~~~Ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~  114 (403)
                      .++|||.....+|.||+|+.+++...        ++.|. .|..|.++-++.+|++||||.+.+             ...
T Consensus         2 ~lTLDp~TAh~~L~lS~d~~~V~~~~~~~~~p~~p~RF~-~~~~VLg~~~f~sG~HYWEVeV~~-------------~~~   67 (179)
T d2iwgb1           2 HITLDPDTANPWLILSEDRRQVRLGDTQQSIPGNEERFD-SYPMVLGAQHFHSGKHYWEVDVTG-------------KEA   67 (179)
T ss_dssp             CCCBCTTTCCTTEEECTTSCEEEECSSCCCCCCCTTSCC-SSSCEEBSCCBSSSEEEEEEECTT-------------CSC
T ss_pred             eeEECCCcCCCCEEEcCCCCEEEECCcCcCCCCCccccc-ccccccccccccCCCEEEEEEEee-------------CCe
Confidence            47899999999999999998886432        22332 477899999999999999999853             357


Q ss_pred             EEEEEecCCCC---CCCCCCCCcceeEe-cCCcee--eCCCcccCCCCCCCCCEEEEEEecCCCCCceEEEEe--Ccccc
Q 015668          115 CRVGTSRGDDP---VGKLGETEQSFGFG-GTGKFS--HGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAK--NGKWL  186 (403)
Q Consensus       115 ~rVG~s~~~~~---~~~lG~d~~Sygy~-~~G~~~--~~~~~~~yG~~f~~gDVIGc~ldl~~~p~~~i~ftk--NG~~l  186 (403)
                      ++||++.....   ...++.+..+|+.. .++..+  |.......... ..-..||++||++.   +.|+|+-  +...+
T Consensus        68 w~vGV~~~s~~Rk~~~~~~~~~~~W~l~~~~~~~~~~~~~~~~~l~~~-~~~~riGV~LD~e~---G~lsFy~v~~~~~l  143 (179)
T d2iwgb1          68 WDLGVCRDSVRRKGHFLLSSKSGFWTIWLWNKQKYEAGTYPQTPLHLQ-VPPCQVGIFLDYEA---GMVSFYNITDHGSL  143 (179)
T ss_dssp             EEEEEEETTCCCSSCCCCCTTTTEEEEEEETTTEEEECCSSCEEECCS-SCCSEEEEEEETTT---TEEEEEETTTTTEE
T ss_pred             EEEEEEcCccCcCcccccCCCCCEEEEEEeCCceEEEecCCCEeEccc-cCccEEEEEEecCC---CEEEEEeCCCCCeE
Confidence            99999986543   34577888899874 344433  33333222211 22358999999999   8999883  22233


Q ss_pred             cccccccCCCCCCccccchhhcccCCCceEeEEEEe
Q 015668          187 GTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK  222 (403)
Q Consensus       187 g~af~~~~~~~~l~~~~~~~~g~~~~~~~fP~v~l~  222 (403)
                      --.|. ...               ..+++||+.++.
T Consensus       144 i~tf~-~~~---------------F~~pl~P~F~~~  163 (179)
T d2iwgb1         144 IYSFS-ECA---------------FTGPLRPFFSPG  163 (179)
T ss_dssp             EEEEC-CCC---------------CCSCEEEEEECC
T ss_pred             EEEeC-CcC---------------CCCCeECeEECc
Confidence            33342 111               257899998864

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.04  E-value=4.1e-10  Score=103.24  Aligned_cols=127  Identities=15%  Similarity=0.236  Sum_probs=87.1

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCC-CcccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPG-LLRKHNYSERFQCLMGRANAIFDVLLSRASR  342 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g-~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~  342 (403)
                      ..|..|+|.|+||+||||+|+.++.++.. .++.||.|.+++.+.... ..... .....+.....+.......+..++.
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~~~~~-~~~~i~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  107 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFEETQG-NVIVIDNDTFKQQHPNFDELVKLY-EKDVVKHVTPYSNRMTEAIISRLSD  107 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTT-CCEEECTHHHHTTSTTHHHHHHHH-GGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhc-ceEEEecHHHHHHhccCcccchhh-hHHHHHHHHhhccchHHHHHHHHHh
Confidence            45889999999999999999999998853 488999999886542100 00000 0001122222223334444556677


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      .+.+.++|.|+........++..+...+ .+.+.++.++ +.+..|+..|..
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~R~~  159 (273)
T d1gvnb_         108 QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYE  159 (273)
T ss_dssp             HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHH
T ss_pred             hCCCCcccccccchHHHHHHHHHHHHcCCeEEEEecCCCchhhhhHHhcCCc
Confidence            8889999999988888877888888766 6666777776 788888888753

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=4.1e-08  Score=85.90  Aligned_cols=120  Identities=21%  Similarity=0.253  Sum_probs=70.9

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH-HHHHhhcCCCcccCCChHHHHHHH--------HHHHH-HH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYSERFQCLM--------GRANA-IF  333 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~-ir~~l~~~g~~~~~~~~~~~~~~~--------~~a~~-~~  333 (403)
                      ....+|+++|+|||||||.|+.|++.+.   +.+|++++ +|++....+.    ..........        ..... ..
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~g---~~~is~gdl~R~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~   78 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDYS---FVHLSAGDLLRAEQGRAGS----QYGELIKNCIKEGQIVPQEITLALLR   78 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSS---CEEEEHHHHHHHHHHSTTC----SCHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC---CeEEehhHHHHHHhhhccc----HHHHHHHHhhhccccccchhHHHHHH
Confidence            3478899999999999999999999996   88999855 4555432221    0011110000        01111 11


Q ss_pred             HHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668          334 DVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       334 ~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      ..+..........+|+|..-.+......+.+.+  ...-.+++++++ +++++|...|.+
T Consensus        79 ~~~~~~~~~~~~~~vl~g~p~~~~q~~~~~~~~--~~~~~~i~l~~~~e~~~~R~~~~~~  136 (196)
T d1ukza_          79 NAISDNVKANKHKFLIDGFPRKMDQAISFERDI--VESKFILFFDCPEDIMLERLLERGK  136 (196)
T ss_dssp             HHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHT--CCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             HHHHhhhccCCCceeeeccchhHHHHHHHHHhc--cccceeeccCCCHHHHHHHHHhccc
Confidence            222223345667899998766655433222111  124456677776 789999887754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.78  E-value=1.4e-08  Score=86.36  Aligned_cols=113  Identities=19%  Similarity=0.108  Sum_probs=67.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcc-cCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLR-KHNYSERFQCLMGRANAIFDVLLSRASRT  343 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~-~~~~~~~~~~~~~~a~~~~~~ll~~al~~  343 (403)
                      .+..|+++|+|||||||+|+.|++.++.  +.+++.|.++.......... ...............    ...+......
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~   77 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAELDG--FQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRL----LDFMEPIMVS   77 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHSTT--EEEEEHHHHHHHTTCSCC------CCCCCHHHHHHH----HHHHHHHHTS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHhCC--CcEEeHHHHHHHHhhhhhHHHhhcccchHHHHHHHH----HHHHHhhhhh
Confidence            3566888899999999999999999864  56677777766543222111 000000011122221    1233344577


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhcc
Q 015668          344 PRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      +..+++|.....         .+.......+|+|.++ +++.+|+.+|..
T Consensus        78 ~~~~~~~~~~~~---------~~~~~~~~~vI~L~~~~e~l~~Rl~~R~~  118 (174)
T d1y63a_          78 RGNHVVDYHSSE---------LFPERWFHMVVVLHTSTEVLFERLTKRQY  118 (174)
T ss_dssp             SSEEEEECSCCT---------TSCGGGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred             cccccccHHHHH---------HHHHhcCceEEEEECCHHHHHHHHHhCCC
Confidence            888999875432         1222123456788887 899999999863

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=3.4e-08  Score=85.46  Aligned_cols=119  Identities=13%  Similarity=0.057  Sum_probs=66.8

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHh
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS  341 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al  341 (403)
                      ....+|+|+|+|||||||+|+.|++.+...  ....+..|.++..+..     ...+..  ........ .....+....
T Consensus        17 ~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~-----~~~~~~--~~~~~~~~-~~~~~~~~~~   88 (195)
T d1x6va3          17 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNK-----NLGFSP--EDREENVR-RIAEVAKLFA   88 (195)
T ss_dssp             CCCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTT-----TCCSSH--HHHHHHHH-HHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhccccc-----ccchhh--hHHHHHHH-HHHHHHHHHH
Confidence            346899999999999999999999876321  2455666665543221     111111  11111111 1223444556


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHh
Q 015668          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKR  390 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R  390 (403)
                      ..+..++.+.++.....+..+...+.... .+..+.+..+ .+..+++.+|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  139 (195)
T d1x6va3          89 DAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG  139 (195)
T ss_dssp             HTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEECC------------
T ss_pred             hcCCccccccccchHHHHHHHHHHHhccccccccccchhheeeehhhccch
Confidence            89999999999999998886555555443 4555566665 5555665554

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.73  E-value=2.7e-08  Score=86.14  Aligned_cols=115  Identities=19%  Similarity=0.162  Sum_probs=68.6

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHH--------H-HHHHHHHHHH
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR--------A-NAIFDVLLSR  339 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~--------a-~~~~~~ll~~  339 (403)
                      |++.|+|||||||.|+.|++.+.   +.+|+.++++.+....+.    ..+...+...+.        . .....++. .
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~g---~~~i~~~d~~~~~~~~~~----~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~-~   76 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERFH---AAHLATGDMLRSQIAKGT----QLGLEAKKIMDQGGLVSDDIMVNMIKDELT-N   76 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTTC----HHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-H
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CceEeccccceeccccCC----hHHHHHHHHHhhhcccccchhHHHHHHHHh-c
Confidence            55679999999999999999986   789999776544321111    001111111100        0 00111111 1


Q ss_pred             HhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668          340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      .......+|+|..-.+..+...+.+.+....  +..+++++++ +++.+|...|.
T Consensus        77 ~~~~~~g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~~  131 (180)
T d1akya1          77 NPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNAD  131 (180)
T ss_dssp             CGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSHH
T ss_pred             CccccCCEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhcccccc
Confidence            1124557999998777776665555555443  4567889887 78999976553

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.4e-07  Score=81.98  Aligned_cols=122  Identities=20%  Similarity=0.256  Sum_probs=69.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH-HHhhcCCCcccCCChHHHHHHHHH--------HHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-EQMKVPGLLRKHNYSERFQCLMGR--------ANAIFDVL  336 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir-~~l~~~g~~~~~~~~~~~~~~~~~--------a~~~~~~l  336 (403)
                      |.+|++.|+|||||||.|+.|++.+.   +.+|++.++. +.......    .........++.        ....+...
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g---~~~i~~g~llR~~~~~~~~----~~~~~~~~~~~~~~~v~d~~~~~~~~~~   73 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYG---YTHLSAGELLRDERKNPDS----QYGELIEKYIKEGKIVPVEITISLLKRE   73 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHCTTS----TTHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC---CceEcHHHHHHHHHHhhhh----hHHHHHHHHHhcCCccccchhhHHHHHh
Confidence            56899999999999999999999886   7888887654 44321111    111111111110        00111111


Q ss_pred             HHH---HhcCCCeEEEeCCCCCHHHHHHHHHHHhc-CCcE-EEEEECCh-HHHHHHHHHhccccC
Q 015668          337 LSR---ASRTPRNFIIDQTNVFKSARKRKLRLFVN-FRKI-AVVVFPKP-EDLKIRSVKRFKEMG  395 (403)
Q Consensus       337 l~~---al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~~~-~vv~l~~p-e~~~~R~~~R~~~~g  395 (403)
                      +..   .......+|+|..-.+...-.. +..+.. ...+ .+++++.+ +++.+|..+|....+
T Consensus        74 ~~~~~~~~~~~~~~~~~g~pr~~~~~~~-l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~  137 (194)
T d1teva_          74 MDQTMAANAQKNKFLIDGFPRNQDNLQG-WNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSG  137 (194)
T ss_dssp             HHHHHHHCTTCCEEEEESCCCSHHHHHH-HHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSS
T ss_pred             hcccchhhhcccceeeccchhhHHHHHH-HhhhhhccccccEEEeecCcchhheeecccCCCccc
Confidence            111   1234678899987666654433 333333 3344 34567776 788999998864433

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.70  E-value=2.2e-08  Score=87.26  Aligned_cols=116  Identities=19%  Similarity=0.153  Sum_probs=67.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHH--------HHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR--------ANAIFDVL  336 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~--------a~~~~~~l  336 (403)
                      +|..|++.|+|||||||.|+.|++.++   +.+|+.+.++++.......    .........+.        ....+...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~---~~~is~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~   74 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQ---LAHISAGDLLRAEIAAGSE----NGKRAKEFMEKGQLVPDEIVVNMVKER   74 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC---CEECCHHHHHHHHHHHTCH----HHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHC---CcEEehhHHHHHhhhcccH----HHHHHHHHHhcCCcccceeehhhhhhH
Confidence            466789999999999999999999987   8899987765443211100    00000000000        00011111


Q ss_pred             HHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668          337 LSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       337 l~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      +.........+|+|....+....    ..|....  +-.+++++.+ +++++|...|.
T Consensus        75 ~~~~~~~~~~~vid~~~~~~~q~----~~l~~~~~~p~~~i~L~~~~e~l~~R~~~~~  128 (189)
T d1zaka1          75 LRQPDAQENGWLLDGYPRSYSQA----MALETLEIRPDTFILLDVPDELLVERVVFDD  128 (189)
T ss_dssp             HHSHHHHHTCEEEESCCCSHHHH----HHHHTTTCCCSEEEEEECCHHHHHHHHTTTC
T ss_pred             hhhcccccCcEEeeccchhhHHH----hhhhhcccccchheeechhhhhhhhhccccc
Confidence            11112334568999976655433    2344433  3457788887 88999986553

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.67  E-value=5.9e-08  Score=83.09  Aligned_cols=112  Identities=19%  Similarity=0.256  Sum_probs=62.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCc-ccCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-RKHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~-~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~  345 (403)
                      +.|+|+|+|||||||+|+.+++.+.   +.+++.|.+.++..  |.. .+-.....++...    +.....+......+.
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg---~~~id~D~~ie~~~--g~~i~ei~~~~g~~~~~----~~~~~~l~~~~~~~~   73 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALG---YEFVDTDIFMQHTS--GMTVADVVAAEGWPGFR----RRESEALQAVATPNR   73 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHH--CSCHHHHHHHHHHHHHH----HHHHHHHHHHCCSSE
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhC---CCEEehhhhhhhhh--hhhhhhhhcccchHHHH----HHHHHHHHhhccccc
Confidence            3467889999999999999999987   78889998776542  321 0000000111111    112233333334444


Q ss_pred             eEEEeCCCC-CHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhccc
Q 015668          346 NFIIDQTNV-FKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKE  393 (403)
Q Consensus       346 ~vIlD~Tn~-~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~~~  393 (403)
                      .+++....+ ....|    +.+...  -.+||+.++ +++.+|...|...
T Consensus        74 ~~~~~~~~~~~~~~~----~~l~~~--~~~v~L~~~~e~l~~Rl~~~~~~  117 (170)
T d1e6ca_          74 VVATGGGMVLLEQNR----QFMRAH--GTVVYLFAPAEELALRLQASLQA  117 (170)
T ss_dssp             EEECCTTGGGSHHHH----HHHHHH--SEEEEEECCHHHHHHHHHHHHCS
T ss_pred             eecccccchhhhHHH----Hhhhcc--ceeEEEecCchhHHHHHhhcccc
Confidence            333333322 22222    223332  246788886 8999998877553

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.63  E-value=1.2e-07  Score=82.47  Aligned_cols=119  Identities=18%  Similarity=0.212  Sum_probs=68.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHHH----HHHHHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSR  339 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~~----a~~~~~~ll~~  339 (403)
                      ..++| |+|+|||||||.|+.|++.+.   +.+|+++++ |+... .+..    .+.....+...    -......++..
T Consensus         3 ~~rii-l~G~pGSGKsT~a~~La~~~g---~~~i~~gdllr~~~~-~~~~----~g~~~~~~~~~g~~~~~~~v~~~~~~   73 (190)
T d1ak2a1           3 GVRAV-LLGPPGAGKGTQAPKLAKNFC---VCHLATGDMLRAMVA-SGSE----LGKKLKATMDAGKLVSDEMVLELIEK   73 (190)
T ss_dssp             CCEEE-EECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHHH-HTCH----HHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             ccEEE-EECCCCCCHHHHHHHHHHHhC---CeEEeHHHHHHHHHh-ccCc----ccchhhhhhccCCccccceeeeeehh
Confidence            35666 579999999999999999986   889998554 54322 1110    00111111100    00011111211


Q ss_pred             H---hcCCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhcc
Q 015668          340 A---SRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       340 a---l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      .   ......+|+|.-.........+.+.+....  ...+++++++ +.+.+|...|..
T Consensus        74 ~l~~~~~~~g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~  132 (190)
T d1ak2a1          74 NLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLI  132 (190)
T ss_dssp             HHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEE
T ss_pred             hhccccccCceeecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCCC
Confidence            1   133557899986666665555444544433  4566788887 789999998864

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.63  E-value=1.7e-07  Score=80.72  Aligned_cols=116  Identities=17%  Similarity=0.151  Sum_probs=69.7

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH-HHhhcCCCcccCCChHHHHHHHHHHH----HHHHHHHHHHh--
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-EQMKVPGLLRKHNYSERFQCLMGRAN----AIFDVLLSRAS--  341 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir-~~l~~~g~~~~~~~~~~~~~~~~~a~----~~~~~ll~~al--  341 (403)
                      |++.|+|||||||.|+.|++.+.   +.+|+.++++ +++.....     ........++...    .....++...+  
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~g---~~~i~~~~l~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~   74 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKLG---IPQISTGELFRRNIEEGTK-----LGVEAKRYLDAGDLVPSDLTNELVDDRLNN   74 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHHHTTCH-----HHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC---CceEchHHHHHHHHhhhhh-----hHHHHHHHHHhhhhhhhHHHHHHHHHHhhC
Confidence            67779999999999999999986   7888886654 43321100     0011111111100    11222332222  


Q ss_pred             -cCCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhcc
Q 015668          342 -RTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       342 -~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                       .....+|+|..-........+...+...+  ...+++++++ +++.+|...|.+
T Consensus        75 ~~~~~~~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~r  129 (181)
T d2cdna1          75 PDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGR  129 (181)
T ss_dssp             GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCC
T ss_pred             ccccccEEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhccccc
Confidence             34568999997777666655444444443  3356788887 899999998864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.60  E-value=2.4e-07  Score=80.95  Aligned_cols=114  Identities=17%  Similarity=0.115  Sum_probs=65.9

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHH--------HHHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMG--------RANAIFD  334 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~--------~a~~~~~  334 (403)
                      +.+.+ +++|+|||||||.|+.|++.+.   +.+|+++++ |+++.....     ........++        ....++.
T Consensus         5 r~mrI-iliG~PGSGKtT~a~~La~~~g---~~~is~gdllr~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~l~~   75 (189)
T d2ak3a1           5 RLLRA-AIMGAPGSGKGTVSSRITKHFE---LKHLSSGDLLRDNMLRGTE-----IGVLAKTFIDQGKLIPDDVMTRLVL   75 (189)
T ss_dssp             CCCEE-EEECCTTSSHHHHHHHHHHHBC---CEEEEHHHHHHHHHHTTCH-----HHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             cceeE-EEECCCCCCHHHHHHHHHHHHC---CeEEcHHHHHHHHHHhhhh-----hhHHHHHHhhhhhhccchhhhhhhh
Confidence            33444 4569999999999999999986   889999665 554431110     0011111110        1111122


Q ss_pred             HHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhcc
Q 015668          335 VLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       335 ~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      ..+..  .....+|+|..--+.... ..   +.... ...+++++++ +.+.+|...|..
T Consensus        76 ~~~~~--~~~~~~ildGfPr~~~q~-~~---l~~~~~~~~vi~L~v~~~~l~~R~~~r~e  129 (189)
T d2ak3a1          76 HELKN--LTQYNWLLDGFPRTLPQA-EA---LDRAYQIDTVINLNVPFEVIKQRLTDRPE  129 (189)
T ss_dssp             HHHHH--HTTSCEEEESCCCSHHHH-HH---HHTTCCCCEEEEEECCHHHHHHHHTGSHH
T ss_pred             hhhhh--hhhcCcccccccchhhHH-HH---hhhcCcceEEEEEeccchhhhhhcccchH
Confidence            22222  345679999865555432 22   33322 4466889998 789999887753

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=4e-08  Score=84.66  Aligned_cols=111  Identities=18%  Similarity=0.157  Sum_probs=64.1

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHH--------HHHHHHHHHHHH
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR--------ANAIFDVLLSRA  340 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~--------a~~~~~~ll~~a  340 (403)
                      |+++|+|||||||.|+.|++.+.   +.+|++++++.+....+..    ........++.        +..++...+. .
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~~---~~~i~~~~llr~~~~~~~~----~~~~i~~~~~~g~~~~d~~v~~~~~~~~~-~   74 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKYG---IPQISTGDMLRAAVKSGSE----LGKQAKDIMDAGKLVTDELVIALVKERIA-Q   74 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHHTCT----TTGGGHHHHHHTCCCCHHHHHHHHHHHHT-S
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CceechhhHhHHhhccCCh----HHHHHHHHHHcCCCCcchhHHHHHHHhhc-c
Confidence            66789999999999999999886   7888887665433211110    01111111111        1111111110 1


Q ss_pred             hcCCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668          341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      ......+|+|...-+...    ...+.+.+  .-.++++++| +++.+|..+|.
T Consensus        75 ~~~~~g~i~~g~pr~~~~----~~~~~~~~~~~~~vi~L~~~~~~l~~R~~~~~  124 (179)
T d1e4va1          75 EDCRNGFLLDGFPRTIPQ----ADAMKEAGINVDYVLEFDVPDELIVDRIVKDD  124 (179)
T ss_dssp             GGGGGCEEEESCCCSHHH----HHHHHHTTCCCSEEEEEECCHHHHHHHHHTTC
T ss_pred             cccccceeecccccchHH----hhhhhhccCCceEEEEeccchhhhhhhhcccc
Confidence            123457999987665542    23344443  4457789987 78999988764

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.53  E-value=8.1e-07  Score=74.95  Aligned_cols=117  Identities=15%  Similarity=0.131  Sum_probs=59.8

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCc---cEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEK---RYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA  340 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~---~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~a  340 (403)
                      ....+|+|+|+|||||||+|+.|++.+...   ....+..|..+....  ...  ......+......+.    ......
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~----~~~~~~   75 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELS--SEL--GFTREDRHTNIQRIA----FVATEL   75 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTC--TTC--CCSHHHHHHHHHHHH----HHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhhhhhHHhhhccc--ccc--chhHHHHHHHHHHHH----HHhhhh
Confidence            457899999999999999999999887421   134455565554432  111  111111111111111    111122


Q ss_pred             hcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHH
Q 015668          341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVK  389 (403)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~p-e~~~~R~~~  389 (403)
                      ......++........ .+........... .+..+++..+ ....+|...
T Consensus        76 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (183)
T d1m8pa3          76 TRAGAAVIAAPIAPYE-ESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKR  125 (183)
T ss_dssp             HHTTCEEEEECCCCCH-HHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSS
T ss_pred             hcccceeecccchhhh-HHHHHHHHhhcccchhhhhhHHHHHHHHHhhhhh
Confidence            2344444444444444 3433344444444 4555677776 555555443

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.52  E-value=3.3e-07  Score=79.88  Aligned_cols=119  Identities=21%  Similarity=0.238  Sum_probs=66.4

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHH--------HHHHHHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMG--------RANAIFDV  335 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~--------~a~~~~~~  335 (403)
                      +.+.+|++.|+|||||||.|+.|++.+.   +.+|+++++.......+..    .+........        .+...+..
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g---~~~is~g~llr~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKYG---YTHLSTGDLLRAEVSSGSA----RGKMLSEIMEKGQLVPLETVLDMLRD   78 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHTC---CEEEEHHHHHHHHHHHTCH----HHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHhC---CeeEeccHHHHHHHHHhHh----hhhhhHHHHhhccCCchheeeeehhh
Confidence            3578999999999999999999999986   8899987765443211110    0011111100        01111111


Q ss_pred             HHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          336 LLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       336 ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      .+.......+.+|+|.---+..+-.. +..... ....++++..+ +++.+|...|.
T Consensus        79 ~l~~~~~~~~g~ildg~pr~~~qa~~-~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~  133 (194)
T d3adka_          79 AMVAKVDTSKGFLIDGYPREVKQGEE-FERKIG-QPTLLLYVDAGPETMTKRLLKRG  133 (194)
T ss_dssp             HHHTTTTTCSCEEEESCCSSHHHHHH-HHHHTC-CCSEEEEEECCHHHHHHHHHHHH
T ss_pred             hhhhcccccccceeeeccchhHHHHH-HHHHhC-CccchhccccchhhhHhHhhhhc
Confidence            12112235667999986555443332 222111 13455566665 78888877665

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.45  E-value=1.1e-07  Score=80.90  Aligned_cols=36  Identities=31%  Similarity=0.587  Sum_probs=31.3

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      |+|+|+|||||||+++.|++.+.   +..+++|.+.++.
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~---~~~~d~d~~ie~~   38 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLD---LVFLDSDFLIEQK   38 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT---CEEEEHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CCEEecCchhhhH
Confidence            67889999999999999999996   7888889876654

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.43  E-value=9.3e-07  Score=76.06  Aligned_cols=114  Identities=18%  Similarity=0.255  Sum_probs=63.9

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH-HHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHH-HHH--
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLL-SRA--  340 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i-r~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll-~~a--  340 (403)
                      |+++|+|||||||.|+.|++.+.   +.+|+++++ |+... .+.    ..+.......++-    ......++ +..  
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g---~~~is~gdllr~~~~-~~~----~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~   74 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYG---TPHISTGDMFRAAIQ-EGT----ELGVKAKSFMDQGALVPDEVTIGIVRERLSK   74 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHH-HTC----HHHHHHHHHHHHTCCCCHHHHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC---CceeeHHHHHHHhhh-cCC----chHHHHHHHHHcCCcccCcchhHHHHHhhcc
Confidence            67899999999999999999986   788888665 44322 111    0011111111110    00111112 111  


Q ss_pred             hcCCCeEEEeCCCCCHHHHHHHHHHHhcCC-c-EEEEEECCh-HHHHHHHHHh
Q 015668          341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFR-K-IAVVVFPKP-EDLKIRSVKR  390 (403)
Q Consensus       341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~-~~vv~l~~p-e~~~~R~~~R  390 (403)
                      ......+|+|.--.+...-..+.+.+.... . ..++.++.+ +.+.+|...+
T Consensus        75 ~~~~~~~vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~  127 (182)
T d1s3ga1          75 SDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTAD  127 (182)
T ss_dssp             STTSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT
T ss_pred             cccccceeeeccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhcc
Confidence            123557999997666665554444455544 3 344566665 7787876554

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=5.7e-07  Score=74.50  Aligned_cols=38  Identities=16%  Similarity=0.267  Sum_probs=31.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      +.|+|+|+|||||||+|+.|++.+.   +.+++.|.+....
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~---~~~id~~~~~~~~   40 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQEIEKR   40 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT---CEEEEHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC---CCeEeechhHHhh
Confidence            4588999999999999999999997   5667777766554

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.34  E-value=1.8e-07  Score=78.85  Aligned_cols=35  Identities=17%  Similarity=0.353  Sum_probs=29.4

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~  306 (403)
                      |+++|+|||||||+|+.|++.+.   +.+++.|.+.++
T Consensus         7 I~i~G~pGsGKTTia~~La~~l~---~~~i~~~~~~~~   41 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKSG---LKYINVGDLARE   41 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC---CcEEechHHHHH
Confidence            67899999999999999999886   667777776554

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.32  E-value=1.6e-06  Score=73.96  Aligned_cols=116  Identities=17%  Similarity=0.164  Sum_probs=62.4

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHH----HHHHHHHH-HHH--h
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRA----NAIFDVLL-SRA--S  341 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a----~~~~~~ll-~~a--l  341 (403)
                      |+++|+|||||||.|+.|++.++   +.+|+.++++.+-.....    ..+.........-    ......++ +..  .
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~---~~~i~~~~ll~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYG---IPHISTGDMFRAAMKEGT----PLGLQAKQYMDRGDLVPDEVTIGIVRERLSKD   75 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHHTC----HHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSG
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC---CceechhHHHHHhhccCC----hhhHHHHHHHHcCCeeccchHHHHHHHHhhch
Confidence            77899999999999999999986   788888876543211110    0001101110000    00011111 111  2


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668          342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      .....+|+|..-.................  ...+++++.+ +.+.+|...|.
T Consensus        76 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~~  128 (182)
T d1zina1          76 DCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTADD  128 (182)
T ss_dssp             GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTC
T ss_pred             hhhcCcccccccchhHHHHHHHHhhhccCCceeeeeccccccchhhhcccccc
Confidence            23457889986655544332222222222  3355677776 88888877654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=4.2e-06  Score=73.53  Aligned_cols=125  Identities=14%  Similarity=0.044  Sum_probs=66.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCcc--EEEec--------cHHHHHHhhcCCCc-ccCCChHHHHHHHHHH--HHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLG--------TNLILEQMKVPGLL-RKHNYSERFQCLMGRA--NAIF  333 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~--~v~ls--------~D~ir~~l~~~g~~-~~~~~~~~~~~~~~~a--~~~~  333 (403)
                      .+|++-|++||||||.++.|.+.+...+  .+++.        .+.+++.+. .+.. .............-.+  ....
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~~~~g~~i~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLL-DIKSVGDEVITDKAEVLMFYAARVQLV   81 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHH-STTTTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCCccchhhhHHHHh-ccccccccccchHHHHHHHHHHHHHHH
Confidence            5789999999999999999987654221  22321        123444432 1111 1111111111111111  1223


Q ss_pred             HHHHHHHhcCCCeEEEeCC------------CCCHHHHHHHHHHHhcC-CcEEEEEECCh-HHHHHHHHHhcc
Q 015668          334 DVLLSRASRTPRNFIIDQT------------NVFKSARKRKLRLFVNF-RKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       334 ~~ll~~al~~g~~vIlD~T------------n~~~~~R~~~~~~~~~~-~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      ...+..++.+|..||.|--            ......-..+...+... .+-.++++++| +++.+|..+|..
T Consensus        82 ~~~i~~~l~~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~~R~~  154 (210)
T d4tmka_          82 ETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGE  154 (210)
T ss_dssp             HHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHcCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhhhccc
Confidence            3445667889999999842            12222222112222222 24567789886 899999999975

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.24  E-value=9.3e-07  Score=74.98  Aligned_cols=38  Identities=37%  Similarity=0.500  Sum_probs=30.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      |.+| ++|+|||||||+++.+++.+.   +-.++.|.+.++.
T Consensus         2 p~Iv-liG~~G~GKSTig~~La~~l~---~~fiD~D~~ie~~   39 (165)
T d2iyva1           2 PKAV-LVGLPGSGKSTIGRRLAKALG---VGLLDTDVAIEQR   39 (165)
T ss_dssp             CSEE-EECSTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHH
T ss_pred             CcEE-EECCCCCCHHHHHHHHHHHhC---CCeEeeccchhhh
Confidence            3444 559999999999999999986   5667788766553

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.18  E-value=5.4e-07  Score=76.57  Aligned_cols=123  Identities=11%  Similarity=0.189  Sum_probs=59.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHH-HHHHhhcCCCcc--cCCChHHHHHHHHHHHHHHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNL-ILEQMKVPGLLR--KHNYSERFQCLMGRANAIFDVLLSRAS  341 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~-ir~~l~~~g~~~--~~~~~~~~~~~~~~a~~~~~~ll~~al  341 (403)
                      ++|++.|+|||||||++++|++.+...  ....++.++ .+..........  ......... ............+. .+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~   79 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPE-TQKRIQKMAGRKIA-EM   79 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHH-HHHHHHHHHHHHHH-HH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhhhhhhhhhhch-hhHHHHHHHHHHHH-HH
Confidence            689999999999999999998865432  244455444 333332111110  000000001 11111111111222 24


Q ss_pred             cCCCeEEEeCCCCCHHHHH----HHHHHHhcCCcEEEEEECCh-HHHHHHHHHhc
Q 015668          342 RTPRNFIIDQTNVFKSARK----RKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       342 ~~g~~vIlD~Tn~~~~~R~----~~~~~~~~~~~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      ..++++|+|....+.....    .............+++++++ +++.+|..+|.
T Consensus        80 ~~~~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~~~  134 (190)
T d1khta_          80 AKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDE  134 (190)
T ss_dssp             HTTSCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSS
T ss_pred             hCCCeEEECCcccchHHHHHHHhhhhhhhhhccccceeeecCCHHHHHHHHHHhc
Confidence            6778899986433211000    00001111124456777775 88888877664

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.08  E-value=3.4e-06  Score=73.01  Aligned_cols=106  Identities=18%  Similarity=0.286  Sum_probs=62.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCc--------------------cEEEeccHHHHHHhhcCCCcc------cCCChH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEK--------------------RYILLGTNLILEQMKVPGLLR------KHNYSE  320 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~--------------------~~v~ls~D~ir~~l~~~g~~~------~~~~~~  320 (403)
                      +.|+++|++||||||++++|+++++..                    .+..++.+.+.+... .|..-      ...|+-
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~-~g~f~e~~~~~g~~Yg~   80 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIK-NNEFIEWAQFSGNYYGS   80 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHH-TTCEEEEEEETTEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHh-cccceeeeEEccceeec
Confidence            348899999999999999999987632                    234444444433322 22110      001111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcC---CcEEEEEECCh-HHHHHHHHHhcc
Q 015668          321 RFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNF---RKIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       321 ~~~~~~~~a~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~---~~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                      ..+            .+...+..|+.+|+|.. .  .    .++.++.+   ..+.+++++.+ +++.+|+.+|..
T Consensus        81 ~~~------------~i~~~~~~g~~~i~~~~-~--~----~~~~lk~~~~~~~~~i~~~~~~~e~l~~RL~~Rg~  137 (186)
T d1gkya_          81 TVA------------SVKQVSKSGKTCILDID-M--Q----GVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT  137 (186)
T ss_dssp             EHH------------HHHHHHHHTSEEEEECC-H--H----HHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHSC
T ss_pred             chh------------hHHHHhcCCCeEEecch-H--H----HHHHHHHhhcccceEEEecCCcHHHHHHHHHhhcc
Confidence            111            22233467889999953 2  1    23334432   25566667775 899999999964

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.07  E-value=3e-06  Score=72.14  Aligned_cols=42  Identities=17%  Similarity=0.299  Sum_probs=30.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEecc-HHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGT-NLILEQM  307 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~-D~ir~~l  307 (403)
                      +++|+++|+|||||||.++.|++.++..  .+..++. |..+...
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~   45 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATA   45 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHH
Confidence            4789999999999999999999877543  2455554 4444443

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.98  E-value=1.6e-05  Score=68.11  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=23.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      ++|+|+|++||||||+++.|.++++.
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~~   28 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIPN   28 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            68999999999999999999988763

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.92  E-value=1.7e-05  Score=68.92  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=21.3

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +|.+.|+.||||||+++.|.+.+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            688899999999999999988664

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=2.9e-05  Score=68.33  Aligned_cols=27  Identities=15%  Similarity=0.319  Sum_probs=24.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      ..+|+++|++||||||+.+.|.+..|.
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p~   28 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQPL   28 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCc
Confidence            478999999999999999999988763

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.89  E-value=1.7e-05  Score=68.48  Aligned_cols=31  Identities=23%  Similarity=0.258  Sum_probs=27.4

Q ss_pred             CCCCceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      ....+.+|++.|..||||||+++.|++.++.
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~   35 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKYKND   35 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3456889999999999999999999999875

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=2.7e-05  Score=67.40  Aligned_cols=105  Identities=17%  Similarity=0.256  Sum_probs=59.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCc--------------------cEEEeccHHHHHHhhcCCCcc------cCCChHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEK--------------------RYILLGTNLILEQMKVPGLLR------KHNYSER  321 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~--------------------~~v~ls~D~ir~~l~~~g~~~------~~~~~~~  321 (403)
                      .|+++|++||||||++++|++.++..                    .+..++.+.+.+.. ..|..-      ...|+-.
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~-~~g~~~e~~~~~~~~Yg~~   80 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDI-AAGDFIEHAEFSGNLYGTS   80 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHH-HHTCEEEEEEETTEEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccCceeEEeehhHHHHHh-hhhhheeeeEEcCcceecc
Confidence            47899999999999999998876532                    12233333322221 112110      0011111


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhcc
Q 015668          322 FQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRFK  392 (403)
Q Consensus       322 ~~~~~~~a~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~~  392 (403)
                                  ..-+...+..|..+|++...   .    .+..++...  .+.+++++.+ +++.+|+.+|..
T Consensus        81 ------------~~~v~~~~~~g~~~~~~~~~---~----~~~~l~~~~~~~~~I~i~~~~~e~l~~RL~~R~~  135 (190)
T d1lvga_          81 ------------KEAVRAVQAMNRICVLDVDL---Q----GVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNT  135 (190)
T ss_dssp             ------------HHHHHHHHHTTCEEEEECCH---H----HHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTC
T ss_pred             ------------cchhhhhhcCCCceeecchH---h----hhhhhhhccccceEEEEecchHHHHHHHHhhccc
Confidence                        11233345789999998742   1    233344433  5555566665 899999999863

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=3.4e-05  Score=67.97  Aligned_cols=121  Identities=14%  Similarity=0.043  Sum_probs=59.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCcc--EEEe-----ccH---HHHHHhhcCCCcccCCChHHH-HHHHHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILL-----GTN---LILEQMKVPGLLRKHNYSERF-QCLMGRANAIFD  334 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~--~v~l-----s~D---~ir~~l~~~g~~~~~~~~~~~-~~~~~~a~~~~~  334 (403)
                      ..+|++.|+.||||||.++.|.+.+...+  ++.+     ++.   .+++-+.  +..   ...... ............
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p~~~~~~~~~i~~~l~--~~~---~~~~~~~~~l~~~~r~~~~   77 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQ--KKS---DVEDHSVHLLFSANRWEQV   77 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHT--TSS---CCCHHHHHHHHHHHHHTTH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCcccchhhhhhhh--ccc---ccchhhhhhHHHHHHHHHH
Confidence            46899999999999999999987654322  3333     111   1222221  211   111111 111111111112


Q ss_pred             HHHHHHhcCCCeEEEeCCCCCHHHH--------HHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668          335 VLLSRASRTPRNFIIDQTNVFKSAR--------KRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       335 ~ll~~al~~g~~vIlD~Tn~~~~~R--------~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      ..+..++.+|.+||+|--..+.-..        ..+++.+...-  +=.+++++.| +++++|..+|.
T Consensus        78 ~~i~~~l~~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~~  145 (209)
T d1nn5a_          78 PLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGH  145 (209)
T ss_dssp             HHHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----
T ss_pred             HhHHHHhhcccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHHhhhhcccc
Confidence            3456677899999999632111111        12233232221  3356788886 88888866543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.59  E-value=1.7e-05  Score=66.53  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=25.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      -++.|+++|+|||||||+|+.|++.++
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            478899999999999999999999987

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=3.3e-05  Score=67.31  Aligned_cols=34  Identities=24%  Similarity=0.350  Sum_probs=29.9

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir  304 (403)
                      +|.+-|+|||||||.|+.|++.+.   +.+||+-+++
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g---l~~iStGdLl   38 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ---WHLLDSGAIY   38 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CcEECHHHHH
Confidence            777889999999999999999997   8999986553

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=8e-05  Score=66.09  Aligned_cols=28  Identities=29%  Similarity=0.291  Sum_probs=25.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCc
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK  293 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~  293 (403)
                      |++|++-|+-||||||+++.|++.+...
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~   29 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEW   29 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence            6899999999999999999999998753

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=0.00066  Score=59.66  Aligned_cols=41  Identities=29%  Similarity=0.317  Sum_probs=32.2

Q ss_pred             CCCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHH
Q 015668          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI  303 (403)
Q Consensus       263 ~~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~i  303 (403)
                      ...|.+|+|+|++|+||||-+.+|+..+.  .+...+++.|..
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~   48 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF   48 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccc
Confidence            34589999999999999999888875432  235788999864

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.34  E-value=6.6e-05  Score=64.39  Aligned_cols=39  Identities=21%  Similarity=0.198  Sum_probs=31.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      +|-+|-++|.+||||||+|+.|. ++.   +.+++.|.+...+
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~-~~g---~~~~~~D~~~~~~   40 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLR-SWG---YPVLDLDALAARA   40 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH-HTT---CCEEEHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH-HCC---CeEEEccHHHHHh
Confidence            57888999999999999999885 454   6778888875554

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.31  E-value=6.4e-05  Score=65.76  Aligned_cols=36  Identities=28%  Similarity=0.353  Sum_probs=30.3

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ  306 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~  306 (403)
                      +|.+-|+|||||||.|+.|++.+.   +.+||+-++...
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg---~~~istGdl~R~   40 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG---FTYLDTGAMYRA   40 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC---CEEEEHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC---CcEECHHHHHHH
Confidence            455669999999999999999997   899998766444

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.28  E-value=0.0012  Score=57.83  Aligned_cols=39  Identities=36%  Similarity=0.437  Sum_probs=30.3

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL  302 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~  302 (403)
                      .+..+|+|+|++|+||||.+.+|+..+.  .+...+++.|.
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt   48 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT   48 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccc
Confidence            4568999999999999998888865433  23477888884

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.26  E-value=0.00023  Score=62.83  Aligned_cols=40  Identities=30%  Similarity=0.337  Sum_probs=30.5

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI  303 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~i  303 (403)
                      ..|.+|+|+|++|+||||-+.+|+..+.  .+...+++.|..
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~   50 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF   50 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeeccc
Confidence            4589999999999999998777764332  234777888853

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=6.9e-05  Score=62.20  Aligned_cols=25  Identities=20%  Similarity=0.283  Sum_probs=22.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      -+|+++|+|||||||+++++++++.
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3789999999999999999997654

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00017  Score=62.78  Aligned_cols=38  Identities=21%  Similarity=0.237  Sum_probs=30.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCc-------cEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK-------RYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~-------~~v~ls~D~  302 (403)
                      +|-+|.++|.+||||||+|+.|++.+...       ...+|+.|.
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~   45 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS   45 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccc
Confidence            47789999999999999999999887531       256777775

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.08  E-value=0.00013  Score=61.98  Aligned_cols=39  Identities=26%  Similarity=0.272  Sum_probs=28.8

Q ss_pred             CCCceEEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccH
Q 015668          263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTN  301 (403)
Q Consensus       263 ~~~~~vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D  301 (403)
                      +..+.+|.++|++||||||+|++|.+.+...  ....++.|
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~   59 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD   59 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhccccccceecccc
Confidence            3457888899999999999999998765422  23445444

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=96.99  E-value=0.0015  Score=61.16  Aligned_cols=33  Identities=18%  Similarity=0.109  Sum_probs=23.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEe
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL  298 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~l  298 (403)
                      ...|.+-|.=||||||+++.|++.+..+..+.+
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~l~~~~v~~~   36 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYV   36 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC----CCEEEE
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHHhCCCCeEEe
Confidence            345778899999999999999987765444444

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00032  Score=61.69  Aligned_cols=27  Identities=19%  Similarity=0.211  Sum_probs=24.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      .++|++-|+-||||||+++.|++.+..
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            578999999999999999999999875

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.94  E-value=0.0004  Score=61.45  Aligned_cols=39  Identities=18%  Similarity=0.275  Sum_probs=33.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEec-cHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG-TNLILEQM  307 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls-~D~ir~~l  307 (403)
                      +.+|.++|..||||||.|+.|.+.+.   +.+++ .|.+.+.+
T Consensus         1 M~iIgiTG~igSGKsTva~~l~e~~g---~~~i~~aD~i~~~l   40 (241)
T d1deka_           1 MKLIFLSGVKRSGKDTTADFIMSNYS---AVKYQLAGPIKDAL   40 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSC---EEECCTTHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC---CeEEcccHHHHHHH
Confidence            46899999999999999999988876   88998 68776665

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.92  E-value=0.00014  Score=63.99  Aligned_cols=39  Identities=23%  Similarity=0.280  Sum_probs=30.6

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL  302 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~  302 (403)
                      .++.+|+|+|++|+||||-+.+|+..+.  .+...+|+.|.
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt   44 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT   44 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecc
Confidence            3578999999999999998887765433  24578888885

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00035  Score=60.91  Aligned_cols=37  Identities=24%  Similarity=0.368  Sum_probs=30.3

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhh
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK  308 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~  308 (403)
                      +|.++|.+||||||+|+.+. ++.   +.+++.|.+..++.
T Consensus         5 iIgitG~igSGKStv~~~l~-~~G---~~vidaD~i~~~l~   41 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA-DLG---INVIDADIIARQVV   41 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH-HTT---CEEEEHHHHHHHTT
T ss_pred             EEEEECCCcCCHHHHHHHHH-HCC---CcEEEchHHHHHHH
Confidence            77899999999999998775 554   78899998766553

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.0037  Score=54.48  Aligned_cols=28  Identities=25%  Similarity=0.349  Sum_probs=25.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCc
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK  293 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~  293 (403)
                      ..+|++-|+-||||||.++.|++.+..+
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~~L~~~   30 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYKKLQPN   30 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHTTTS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHhC
Confidence            4789999999999999999999998654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.84  E-value=0.00086  Score=60.25  Aligned_cols=38  Identities=21%  Similarity=0.271  Sum_probs=30.6

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir  304 (403)
                      +.-|+|.|+||+|||++|+.+++++.. .++.++...+.
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~~~-~~~~i~~~~l~   79 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEARV-PFITASGSDFV   79 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTTC-CEEEEEHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHHHcCC-CEEEEEhHHhh
Confidence            567899999999999999999999863 36667655544

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.82  E-value=0.00021  Score=62.95  Aligned_cols=39  Identities=31%  Similarity=0.296  Sum_probs=26.5

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL  302 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D~  302 (403)
                      +.|.+|+|+|++|+||||.+.+|+..+.  .+...+++.|.
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt   50 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADV   50 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeec
Confidence            4689999999999999998777765433  23577888884

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00039  Score=64.72  Aligned_cols=42  Identities=21%  Similarity=0.143  Sum_probs=33.8

Q ss_pred             CCCCceEEEEEccCCCChhHHHHHHHHhCC----CccEEEeccHHH
Q 015668          262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLI  303 (403)
Q Consensus       262 ~~~~~~vill~GlPGSGKST~A~~l~~~~~----~~~~v~ls~D~i  303 (403)
                      +.+.|-+|.++|.+||||||+|+.|...+.    .....+|+.|.+
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F  121 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee
Confidence            346689999999999999999999987653    234788999975

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.70  E-value=0.00019  Score=59.93  Aligned_cols=27  Identities=44%  Similarity=0.602  Sum_probs=23.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      +++|.++|.+||||||++.++.+++..
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            368889999999999999999887653

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00032  Score=58.27  Aligned_cols=24  Identities=29%  Similarity=0.342  Sum_probs=21.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      +.|+++|+||+||||+++++++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            458899999999999999998765

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.52  E-value=0.00069  Score=62.26  Aligned_cols=40  Identities=18%  Similarity=0.039  Sum_probs=30.8

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC-----CccEEEeccHHH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP-----EKRYILLGTNLI  303 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~-----~~~~v~ls~D~i  303 (403)
                      ..|-+|-+.|.+||||||++..+...+.     ....++||.|++
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf   69 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   69 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence            4578999999999999999988765431     123677899985

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.51  E-value=0.0023  Score=57.28  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=26.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls  299 (403)
                      +.-|+|.|+||+|||++|+.++.++.. .++.++
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~-~~~~i~   72 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNF-PFIKIC   72 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTC-SEEEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhcccc-cccccc
Confidence            567899999999999999999988763 345553

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.49  E-value=0.00045  Score=57.69  Aligned_cols=24  Identities=33%  Similarity=0.518  Sum_probs=21.6

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      |+++|+|||||||+++.++..++.
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCC
Confidence            789999999999999999987763

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.46  E-value=0.00094  Score=57.87  Aligned_cols=37  Identities=24%  Similarity=0.317  Sum_probs=29.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM  307 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l  307 (403)
                      -+|-++|.+||||||+|+.+. ++.   +.+++.|.+..++
T Consensus         3 ~iIgITG~igSGKStv~~~l~-~~G---~~vidaD~i~~~l   39 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT-DLG---VPLVDADVVAREV   39 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH-TTT---CCEEEHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCC---CeEEEchHHHHHH
Confidence            467799999999999999886 444   6788999875554

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.00068  Score=61.32  Aligned_cols=37  Identities=22%  Similarity=0.272  Sum_probs=29.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      .+.-++|.|+||+|||++|+.+++++.. .++.++...
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~~~-~~~~i~~~~   80 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEAKV-PFFTISGSD   80 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTC-CEEEECSCS
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHcCC-CEEEEEhHH
Confidence            3678999999999999999999998763 356665544

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.31  E-value=0.001  Score=58.19  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=26.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCC-ccEEEeccH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTN  301 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls~D  301 (403)
                      ||+++|.+||||||+.+++.+.+.. +...+|+.|
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d   36 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD   36 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecC
Confidence            7889999999999999999865543 235566543

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.31  E-value=0.0021  Score=58.10  Aligned_cols=39  Identities=21%  Similarity=0.339  Sum_probs=31.5

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL  304 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir  304 (403)
                      .+.-|+|.|+||+|||++|+.++.++.. .++.++...+.
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~~~-~~~~~~~~~l~   78 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANECQA-NFISIKGPELL   78 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHTTC-EEEEECHHHHH
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHhCC-cEEEEEHHHhh
Confidence            3567999999999999999999999864 46777665544

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.26  E-value=0.0012  Score=58.05  Aligned_cols=31  Identities=23%  Similarity=0.304  Sum_probs=24.8

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~ls  299 (403)
                      -+++.|+||+||||+|+.+++++... +..+|
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~-~~~~~   67 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTN-IHVTS   67 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCC-EEEEE
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCC-ccccc
Confidence            47899999999999999999988743 34443

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.0059  Score=52.63  Aligned_cols=102  Identities=17%  Similarity=0.261  Sum_probs=55.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHhC---------CCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDH---------PEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLS  338 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~---------~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~  338 (403)
                      =++|+|.||.|||++++.+++..         ..+..+.++...+.     .|    ..|...|++....       +++
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~Li-----Ag----~~~rG~~E~rl~~-------il~  108 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV-----AG----AKYRGEFEERLKG-------VLN  108 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHH-----TT----TCSHHHHHHHHHH-------HHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHh-----cc----CCccHHHHHHHHH-------HHH
Confidence            36899999999999998888632         23334445443332     23    2345555543322       333


Q ss_pred             HHh-cCCC-eEEEeCCCCCHHH--------HHHHHHHHhcCCcEEEEEECChHHHHH
Q 015668          339 RAS-RTPR-NFIIDQTNVFKSA--------RKRKLRLFVNFRKIAVVVFPKPEDLKI  385 (403)
Q Consensus       339 ~al-~~g~-~vIlD~Tn~~~~~--------R~~~~~~~~~~~~~~vv~l~~pe~~~~  385 (403)
                      .+. ..+. ...||.-+..-..        -..+++.+-..+.+.++---+|+++.+
T Consensus       109 e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~eey~~  165 (195)
T d1jbka_         109 DLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQ  165 (195)
T ss_dssp             HHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHH
T ss_pred             HHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCCHHHHHH
Confidence            322 3444 4567763332110        113444444445777777777766654

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.0026  Score=57.19  Aligned_cols=36  Identities=19%  Similarity=0.288  Sum_probs=28.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      +.-|+|.|+||+|||++|+.++.+... .++.++...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~~~-~~~~i~~~~   73 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANETGA-FFFLINGPE   73 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTTC-EEEEECHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHHhCC-eEEEEEchh
Confidence            466899999999999999999998863 345554443

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0056  Score=55.43  Aligned_cols=23  Identities=30%  Similarity=0.300  Sum_probs=19.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .=++|+|.||.|||++++.+++.
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHH
Confidence            34679999999999999888864

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.07  E-value=0.0019  Score=56.55  Aligned_cols=38  Identities=16%  Similarity=0.194  Sum_probs=27.5

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCC--ccEEEeccHHHHHH
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQ  306 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~--~~~v~ls~D~ir~~  306 (403)
                      +++.|.||+|||++++.++.+...  ...+.++...+...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~   78 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA   78 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHH
Confidence            789999999999999888776432  23566666555443

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.97  E-value=0.015  Score=54.25  Aligned_cols=33  Identities=12%  Similarity=0.096  Sum_probs=25.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCc-cEEEe
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEK-RYILL  298 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~-~~v~l  298 (403)
                      ...|.+-|.-|+||||+++.|++.+..+ .++++
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~   39 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYF   39 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence            4567778999999999999999887543 24444

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.93  E-value=0.0018  Score=57.13  Aligned_cols=35  Identities=23%  Similarity=0.186  Sum_probs=28.2

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      .+..+++.|+||+||||+|+.+++++... +..++.
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~~~~-~~~~~~   85 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQELGYD-ILEQNA   85 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCE-EEEECT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHhh-hhcccc
Confidence            45678999999999999999999998642 445544

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.002  Score=54.63  Aligned_cols=26  Identities=15%  Similarity=0.525  Sum_probs=23.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      ++|+++|++||||||++++|+++.+.
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~~   29 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHPD   29 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCCc
Confidence            67999999999999999999988764

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.84  E-value=0.0094  Score=55.55  Aligned_cols=27  Identities=26%  Similarity=0.258  Sum_probs=22.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCc
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEK  293 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~  293 (403)
                      ..|.+-|.-||||||+++.+++.+...
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~~   32 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAIT   32 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            347778999999999999999987643

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.81  E-value=0.002  Score=56.36  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHhC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~  290 (403)
                      -++++|+||+||||+|+.+++++
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            47899999999999999998865

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.81  E-value=0.002  Score=56.69  Aligned_cols=32  Identities=25%  Similarity=0.325  Sum_probs=25.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEec
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG  299 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls  299 (403)
                      .-++|.|+||+||||+|+.+++++... +..++
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~~~-~~~~~   67 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTS   67 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCC-EEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCC-eEecc
Confidence            347899999999999999999887632 44444

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.0033  Score=55.23  Aligned_cols=36  Identities=17%  Similarity=0.337  Sum_probs=28.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D  301 (403)
                      .-+++++|..||||||+.+++.+....+++.+|-.|
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~~~~~riaVI~Ne   38 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE   38 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhcCCCCcEEEEEec
Confidence            457899999999999999999987655556555433

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.73  E-value=0.015  Score=51.78  Aligned_cols=36  Identities=22%  Similarity=0.184  Sum_probs=27.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh---CCCccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD---HPEKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~---~~~~~~v~ls~D  301 (403)
                      .+++++.|.||+|||||+..++..   .....+.+++.+
T Consensus        35 G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E   73 (277)
T d1cr2a_          35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (277)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeec
Confidence            589999999999999999888743   223346677654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.71  E-value=0.0027  Score=58.68  Aligned_cols=36  Identities=22%  Similarity=0.292  Sum_probs=28.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      +.-++|+|+||+|||++|+.+++.+.. .++.++.-.
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~~-~~~~i~~s~   84 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLANA-PFIKVEATK   84 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTC-CEEEEEGGG
T ss_pred             CceEEEECCCCCCHHHHHHHHhhcccc-chhcccccc
Confidence            467789999999999999999988753 366665443

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.56  E-value=0.0018  Score=59.46  Aligned_cols=36  Identities=8%  Similarity=0.223  Sum_probs=25.9

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCc--cEEEeccHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLI  303 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~--~~v~ls~D~i  303 (403)
                      +|-++|.+||||||+++.+.+.+...  ..++|+.|..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf   43 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   43 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence            89999999999999999887655422  2678888965

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.50  E-value=0.067  Score=47.70  Aligned_cols=51  Identities=12%  Similarity=0.169  Sum_probs=36.8

Q ss_pred             hcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHhc
Q 015668          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRF  391 (403)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~pe~~~~R~~~R~  391 (403)
                      +.+-+.+|+|-  +++.+..++.+++.+.+.+  ...++++..+-+...+...|-
T Consensus       165 ~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri  219 (258)
T d1b0ua_         165 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHV  219 (258)
T ss_dssp             HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEE
T ss_pred             hcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEE
Confidence            46788999998  7888888888888777643  467777766644445666664

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.27  E-value=0.085  Score=46.47  Aligned_cols=50  Identities=12%  Similarity=0.157  Sum_probs=34.4

Q ss_pred             hcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECChHHHHHHHHHh
Q 015668          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKPEDLKIRSVKR  390 (403)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~pe~~~~R~~~R  390 (403)
                      +.+-+.+|+|-  +++.+..|+.+++.+.+..   .+.++++.-+-+...+...|
T Consensus       152 ~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dr  206 (239)
T d1v43a3         152 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDR  206 (239)
T ss_dssp             TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSE
T ss_pred             ccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCE
Confidence            56788999997  7888888988888887752   56776665543333444555

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.23  E-value=0.0035  Score=54.52  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             EEEEccCCCChhHHHHHHHHhCC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +++.|+||+||||+|+.+++++.
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHHh
Confidence            67899999999999999988754

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0047  Score=51.87  Aligned_cols=25  Identities=20%  Similarity=0.161  Sum_probs=22.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .+++++.|+|||||||++.+++...
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            5799999999999999999998653

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.16  E-value=0.005  Score=54.13  Aligned_cols=27  Identities=22%  Similarity=0.212  Sum_probs=23.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      .+..+++.|+||+||||+|+.+++.+.
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            467789999999999999999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.09  E-value=0.0053  Score=49.46  Aligned_cols=22  Identities=45%  Similarity=0.527  Sum_probs=19.5

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |+++|.|++||||+.+++...-
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6799999999999999997653

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.06  E-value=0.0051  Score=53.34  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=20.6

Q ss_pred             EEEEccCCCChhHHHHHHHHhCC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +++.|+||+||||+|+.+++++.
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHhh
Confidence            67899999999999999998753

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.02  E-value=0.0053  Score=53.32  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=20.1

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      +++.|+||+||||+|+.+++++
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999999874

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.96  E-value=0.0047  Score=54.21  Aligned_cols=23  Identities=17%  Similarity=0.294  Sum_probs=20.8

Q ss_pred             EEEEEccCCCChhHHHHHHHHhC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~  290 (403)
                      -+++.|+||+||||+|+.+++++
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhh
Confidence            47899999999999999999875

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.65  E-value=0.0048  Score=54.60  Aligned_cols=25  Identities=32%  Similarity=0.215  Sum_probs=20.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      .+++++|+||+||||+++.+++++.
T Consensus        47 ~~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          47 MIYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             eEEEeECCCCCCHHHHHHHHHHHHH
Confidence            3556679999999999999998753

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.63  E-value=0.0093  Score=51.97  Aligned_cols=26  Identities=23%  Similarity=0.127  Sum_probs=22.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .-.++++.|.|||||||+|-+++...
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            36899999999999999999997654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.55  E-value=0.0083  Score=48.11  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=19.8

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |+|+|.|++||||+..++....
T Consensus         3 I~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6799999999999999998753

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=94.54  E-value=0.0081  Score=49.51  Aligned_cols=24  Identities=29%  Similarity=0.519  Sum_probs=20.2

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      +.+ |+++|.||+||||+..++...
T Consensus        15 ~~k-I~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          15 EHK-VIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             CEE-EEEEESTTSSHHHHHHHHHTT
T ss_pred             eEE-EEEECCCCCCHHHHHHHHhcC
Confidence            344 668899999999999999865

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.51  E-value=0.0068  Score=56.11  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=21.1

Q ss_pred             EEEEccCCCChhHHHHHHHHhCC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~  291 (403)
                      |+|+|.||+||||+|+.++.-+|
T Consensus        31 vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCC
Confidence            78999999999999999988775

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.46  E-value=0.0089  Score=57.98  Aligned_cols=34  Identities=24%  Similarity=0.325  Sum_probs=26.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      +.=|+|+|++|+|||.+|+.|++.+.- .++.++.
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~V-PFv~~da   82 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLANA-PFIKVEA   82 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTC-CEEEEEG
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhCC-CEEEeec
Confidence            445889999999999999999997642 2666633

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.34  E-value=0.0083  Score=51.80  Aligned_cols=25  Identities=12%  Similarity=0.159  Sum_probs=21.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ...++++.|.|||||||++-+++..
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3579999999999999999998643

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.21  E-value=0.014  Score=49.22  Aligned_cols=21  Identities=14%  Similarity=0.416  Sum_probs=19.0

Q ss_pred             EEEEEccCCCChhHHHHHHHH
Q 015668          268 VMMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~  288 (403)
                      .|+++|.|+|||||+.+.|..
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHhcC
Confidence            488899999999999999974

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.19  E-value=0.013  Score=51.22  Aligned_cols=27  Identities=15%  Similarity=0.317  Sum_probs=23.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      ..+|++.|++|+||||++++++++.+.
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~~~   55 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINELNL   55 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHCCC
Confidence            467889999999999999999887764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.13  E-value=0.0093  Score=48.79  Aligned_cols=21  Identities=38%  Similarity=0.661  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.||+||||+.+++...
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            679999999999999999764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.11  E-value=0.016  Score=52.29  Aligned_cols=27  Identities=22%  Similarity=0.294  Sum_probs=23.2

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .+..+|.++|++|.||||+|+++.+..
T Consensus        42 ~~~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          42 LDSFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhh
Confidence            357899999999999999999987653

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.09  E-value=0.012  Score=47.56  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.7

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |+++|.|++||||+.+++....
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7799999999999999997654

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.08  E-value=0.021  Score=47.39  Aligned_cols=28  Identities=18%  Similarity=0.202  Sum_probs=25.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      ...+|+|.|.-|||||||++.+++.+.-
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            3679999999999999999999998863

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.04  E-value=0.015  Score=54.74  Aligned_cols=34  Identities=21%  Similarity=0.136  Sum_probs=28.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      ...++++|+||+|||++|+.++..+.. .++.+|.
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~~~~~-~~i~in~  187 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLELCGG-KALNVNL  187 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCC-EEECCSS
T ss_pred             cCeEEEECCCCCCHHHHHHHHHHHcCC-CEEEEEC
Confidence            468999999999999999999999874 3555653

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.02  E-value=0.013  Score=48.24  Aligned_cols=22  Identities=41%  Similarity=0.641  Sum_probs=19.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHh
Q 015668          268 VMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~  289 (403)
                      .|+++|.|++||||+.++|...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999743

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.94  E-value=0.013  Score=49.55  Aligned_cols=33  Identities=15%  Similarity=0.312  Sum_probs=25.9

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      -.-|+++|.+|+||||+|-.+.+.-    +..++-|.
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~G----~~lvaDD~   47 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINKN----HLFVGDDA   47 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTTT----CEEEEEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcC----CceecCCe
Confidence            4678999999999999999998653    45565553

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.91  E-value=0.017  Score=45.60  Aligned_cols=28  Identities=4%  Similarity=-0.051  Sum_probs=23.6

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ++.-.|+|.|++||||||+|+.|...+.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~   31 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFL   31 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3467899999999999999999976553

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.89  E-value=0.015  Score=49.21  Aligned_cols=32  Identities=19%  Similarity=0.181  Sum_probs=25.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D  301 (403)
                      -.-|+++|.+|+||||+|-.+.+.-    +..|+-|
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~g----~~lv~DD   45 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQRG----HRLIADD   45 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHTT----CEEEEEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcC----CeEEecC
Confidence            4678999999999999999998753    4555555

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.017  Score=50.13  Aligned_cols=25  Identities=16%  Similarity=0.151  Sum_probs=22.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .-.++++.|.||+|||++|.+++..
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999999999853

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.79  E-value=0.012  Score=48.23  Aligned_cols=24  Identities=29%  Similarity=0.451  Sum_probs=20.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ..+ |+|+|.||+||||+..++...
T Consensus        13 ~~k-I~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          13 TGK-LVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             CEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred             CCE-EEEECCCCCCHHHHHHHHhCC
Confidence            344 669999999999999999754

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.75  E-value=0.018  Score=49.43  Aligned_cols=26  Identities=23%  Similarity=0.196  Sum_probs=22.8

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ...++++.|.||+||||++.+++...
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            35899999999999999999998644

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.75  E-value=0.016  Score=49.04  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=20.1

Q ss_pred             EEEEEccCCCChhHHHHHHHHhC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .|+++|.|++||||+..+|..+-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46889999999999999998653

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.72  E-value=0.016  Score=50.32  Aligned_cols=37  Identities=22%  Similarity=0.424  Sum_probs=27.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      ...++++.|.||||||+++.+++...-  ....+.++.+
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e   63 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE   63 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeecc
Confidence            357999999999999999999876631  2234556544

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.68  E-value=0.015  Score=47.58  Aligned_cols=22  Identities=23%  Similarity=0.560  Sum_probs=19.6

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |+|+|.|++||||+.+++....
T Consensus         5 i~vvG~~~vGKTSli~~l~~~~   26 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVEDK   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6799999999999999998654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.50  E-value=0.017  Score=47.84  Aligned_cols=22  Identities=18%  Similarity=0.323  Sum_probs=19.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHh
Q 015668          268 VMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~  289 (403)
                      -|+++|.|++||||+.+++..+
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999753

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.48  E-value=0.017  Score=47.62  Aligned_cols=21  Identities=14%  Similarity=0.544  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+|+|.||+||||+++++...
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999754

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.46  E-value=0.021  Score=47.91  Aligned_cols=33  Identities=18%  Similarity=0.151  Sum_probs=26.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL  302 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~  302 (403)
                      -.-|+++|.+|+||||+|-.+.+.-    +..|+-|.
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g----~~li~DD~   47 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRG----HRLVADDN   47 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTT----CEEEESSE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcC----CeEEeCCe
Confidence            4678999999999999999988763    45665554

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.39  E-value=0.019  Score=49.47  Aligned_cols=27  Identities=11%  Similarity=0.239  Sum_probs=23.1

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      +-+..+++.|+||+||||+|+.+++.+
T Consensus        22 ~l~h~lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2          22 RGHHALLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             CCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcCeEEEEECCCCCcHHHHHHHHHHhc
Confidence            345678999999999999999998865

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.37  E-value=0.082  Score=47.25  Aligned_cols=36  Identities=19%  Similarity=0.268  Sum_probs=26.8

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC--CCccEEEeccH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~ls~D  301 (403)
                      ..++.+.|.|||||||++-+++...  ++...+.|+++
T Consensus        54 g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE   91 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE   91 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence            5799999999999999987775432  22346777665

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.33  E-value=0.019  Score=46.92  Aligned_cols=21  Identities=33%  Similarity=0.589  Sum_probs=18.8

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+|+|.||+||||+..++...
T Consensus         5 v~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999999853

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.32  E-value=0.017  Score=51.66  Aligned_cols=33  Identities=27%  Similarity=0.318  Sum_probs=26.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC-CccEEEe
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILL  298 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~l  298 (403)
                      .+.+.++|++||||||+++.+..-+. ..+-+.+
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i   74 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITRFYDIDEGHILM   74 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEE
T ss_pred             CCEEEEECCCCChHHHHHHHHhcccCCCccEEEE
Confidence            57899999999999999999987554 3345555

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.31  E-value=0.019  Score=47.39  Aligned_cols=21  Identities=14%  Similarity=0.355  Sum_probs=18.7

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.||+||||++.++...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            678999999999999998754

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=93.30  E-value=0.018  Score=51.16  Aligned_cols=34  Identities=26%  Similarity=0.275  Sum_probs=27.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEec
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG  299 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls  299 (403)
                      .+.|.++|.+||||||+++.+..-++. .+-+.++
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~   63 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID   63 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEEC
Confidence            588999999999999999999886653 3455554

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.25  E-value=0.02  Score=47.09  Aligned_cols=21  Identities=24%  Similarity=0.626  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.+|+||||+..++...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999999754

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=93.20  E-value=0.024  Score=52.62  Aligned_cols=28  Identities=21%  Similarity=0.252  Sum_probs=23.7

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ....+|-++|+|||||||+..++...+.
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999876543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.09  E-value=0.021  Score=47.61  Aligned_cols=21  Identities=24%  Similarity=0.528  Sum_probs=18.7

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+|+|.||+||||+++++...
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            678999999999999999853

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=93.09  E-value=0.028  Score=52.02  Aligned_cols=108  Identities=16%  Similarity=0.147  Sum_probs=58.2

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCc-cEEEeccHHHHHHhhcCCCcc--cCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEK-RYILLGTNLILEQMKVPGLLR--KHNYSERFQCLMGRANAIFDVLLSRASRTPR  345 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~-~~v~ls~D~ir~~l~~~g~~~--~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~  345 (403)
                      |+++|.+||||||+.+.++...+.. +.+.|  .+-. ++.+....+  .......    +     .+..++..+++..-
T Consensus       169 ili~G~tgSGKTT~l~al~~~i~~~~rivti--Ed~~-El~l~~~~~~~~~~~~~~----~-----~~~~ll~~~lR~~p  236 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIKSIMEFIPKEERIISI--EDTE-EIVFKHHKNYTQLFFGGN----I-----TSADCLKSCLRMRP  236 (323)
T ss_dssp             EEEEESTTSSHHHHHHHHGGGSCTTCCEEEE--ESSC-CCCCSSCSSEEEEECBTT----B-----CHHHHHHHHTTSCC
T ss_pred             EEEEeeccccchHHHHHHhhhcccccceeec--cchh-hhhcccccccceeccccc----h-----hHHHHHHHHhccCC
Confidence            7889999999999999999988753 34444  2111 121111100  0000100    0     12235555666555


Q ss_pred             eE-EEeCCCCCHHHHHHHHHHHhcCCc--EEEEEECChHHHHHHHHHh
Q 015668          346 NF-IIDQTNVFKSARKRKLRLFVNFRK--IAVVVFPKPEDLKIRSVKR  390 (403)
Q Consensus       346 ~v-IlD~Tn~~~~~R~~~~~~~~~~~~--~~vv~l~~pe~~~~R~~~R  390 (403)
                      +. |+.-.- .++.-. +++.+..-|.  +.-+.-+++....+|...-
T Consensus       237 d~iivgEiR-~~ea~~-~l~a~~tGh~g~~tT~Ha~s~~~a~~Rl~~l  282 (323)
T d1g6oa_         237 DRIILGELR-SSEAYD-FYNVLCSGHKGTLTTLHAGSSEEAFIRLANM  282 (323)
T ss_dssp             SEEEESCCC-STHHHH-HHHHHHTTCSCEEEEECCSSHHHHHHHHHHH
T ss_pred             CcccCCccC-chhHHH-HHHHHHhcCCcEEEEECCCCHHHHHHHHHHh
Confidence            44 444443 445443 4555544333  4445666677888888753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=93.08  E-value=0.015  Score=48.05  Aligned_cols=26  Identities=38%  Similarity=0.505  Sum_probs=21.1

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ++.+ |+++|.|++||||+.+++....
T Consensus        11 k~~k-IvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          11 KEMR-ILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             CCEE-EEEEEETTSSHHHHHHHTTCCC
T ss_pred             CeEE-EEEECCCCCCHHHHHHHHhcCC
Confidence            3455 6688999999999999997544

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.08  E-value=0.02  Score=47.06  Aligned_cols=26  Identities=23%  Similarity=0.557  Sum_probs=20.9

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ++.+ |+++|.|++||||+.+++....
T Consensus        15 ~~~k-I~vvG~~~vGKSsLi~~l~~~~   40 (176)
T d1fzqa_          15 QEVR-ILLLGLDNAGKTTLLKQLASED   40 (176)
T ss_dssp             SCEE-EEEEESTTSSHHHHHHHHCCSC
T ss_pred             CEEE-EEEECCCCCCHHHHHHHHhcCC
Confidence            3344 6799999999999999996543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.06  E-value=0.027  Score=51.83  Aligned_cols=34  Identities=15%  Similarity=0.163  Sum_probs=27.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccH
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN  301 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D  301 (403)
                      -.++++|+||+|||.+|+.+++.+.. .++.++.-
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~~-~~i~~d~s   86 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALGI-ELLRFDMS   86 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTC-EEEEEEGG
T ss_pred             eEEEEECCCcchhHHHHHHHHhhccC-CeeEeccc
Confidence            47889999999999999999998864 46666443

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.03  E-value=0.025  Score=49.91  Aligned_cols=50  Identities=10%  Similarity=0.156  Sum_probs=33.8

Q ss_pred             hcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECChHHHHHHHHHh
Q 015668          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKPEDLKIRSVKR  390 (403)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~pe~~~~R~~~R  390 (403)
                      +.+-..+|+|-  +++.+..++.+++.+.+..   .+.++++.-+.+...+...|
T Consensus       146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dr  200 (232)
T d2awna2         146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK  200 (232)
T ss_dssp             HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSE
T ss_pred             hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            56788999997  7888888888877777642   56666665553333444555

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.03  E-value=0.026  Score=52.24  Aligned_cols=26  Identities=19%  Similarity=0.187  Sum_probs=23.0

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHh
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      ....+|-++|.|||||||+..++...
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHH
Confidence            45789999999999999999999864

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.023  Score=46.77  Aligned_cols=21  Identities=19%  Similarity=0.523  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.+|+||||+.+++...
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999999863

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.99  E-value=0.024  Score=48.38  Aligned_cols=23  Identities=17%  Similarity=0.349  Sum_probs=20.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWV  287 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~  287 (403)
                      ...++++.|.||+|||++|.+++
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            36899999999999999998765

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=92.99  E-value=0.023  Score=46.37  Aligned_cols=22  Identities=36%  Similarity=0.549  Sum_probs=18.7

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |+|+|.+++||||+..++....
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~~   26 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASGQ   26 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            4567999999999999997654

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.99  E-value=0.068  Score=50.52  Aligned_cols=19  Identities=32%  Similarity=0.580  Sum_probs=16.3

Q ss_pred             EEEccCCCChhHHHHHHHH
Q 015668          270 MMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       270 ll~GlPGSGKST~A~~l~~  288 (403)
                      +|+|.||.|||+++..|+.
T Consensus        47 llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          47 VLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             EEEECTTSCHHHHHHHHHH
T ss_pred             eEECCCCCCHHHHHHHHHH
Confidence            6789999999998877664

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=92.98  E-value=0.023  Score=50.43  Aligned_cols=34  Identities=15%  Similarity=0.122  Sum_probs=26.2

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEe
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILL  298 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~l  298 (403)
                      ..+.+.++|++||||||+++.+..-+. ..+-+.+
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i   61 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI   61 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEE
Confidence            358999999999999999999987653 2233444

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.97  E-value=0.023  Score=46.72  Aligned_cols=20  Identities=25%  Similarity=0.579  Sum_probs=18.4

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q 015668          269 MMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~  288 (403)
                      |+++|.|++||||+..++..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            67999999999999999875

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=92.96  E-value=0.023  Score=50.31  Aligned_cols=50  Identities=16%  Similarity=0.261  Sum_probs=35.7

Q ss_pred             hcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECChHHHHHHHHHh
Q 015668          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKPEDLKIRSVKR  390 (403)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~pe~~~~R~~~R  390 (403)
                      +.+-+.+|+|-  +++.+..|..+++.+.+..   .+.++++.-+-+...+...|
T Consensus       155 ~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~dr  209 (240)
T d1g2912         155 VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDR  209 (240)
T ss_dssp             HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSE
T ss_pred             hcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCE
Confidence            57888999997  8889999998888887652   56777776653333445555

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=92.95  E-value=0.023  Score=50.34  Aligned_cols=51  Identities=12%  Similarity=0.288  Sum_probs=37.8

Q ss_pred             hcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECChHHHHHHHHHhc
Q 015668          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKPEDLKIRSVKRF  391 (403)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~pe~~~~R~~~R~  391 (403)
                      +.+-+.+|+|-  +++.+..++.+++.+.+.+   .+.++++.-+-....+...|-
T Consensus       156 ~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri  211 (240)
T d3dhwc1         156 ASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCV  211 (240)
T ss_dssp             HTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEE
T ss_pred             ccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEE
Confidence            56788999998  8889999999888888753   577877777644445566663

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=92.95  E-value=0.022  Score=46.04  Aligned_cols=21  Identities=19%  Similarity=0.446  Sum_probs=18.8

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.|++||||+.+++...
T Consensus         4 I~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            679999999999999999754

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.95  E-value=0.024  Score=46.93  Aligned_cols=21  Identities=14%  Similarity=0.523  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.|++||||+++++...
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999999764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.90  E-value=0.024  Score=48.19  Aligned_cols=23  Identities=30%  Similarity=0.439  Sum_probs=20.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHhC
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~  290 (403)
                      -|+++|.|++||||+.+++....
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            48999999999999999998643

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=92.87  E-value=0.018  Score=47.94  Aligned_cols=26  Identities=27%  Similarity=0.413  Sum_probs=20.3

Q ss_pred             CCCCceEEEEEccCCCChhHHHHHHHH
Q 015668          262 NMKDCEVMMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       262 ~~~~~~vill~GlPGSGKST~A~~l~~  288 (403)
                      +.++.+ |+++|.||+||||+.+++..
T Consensus        14 ~~k~~K-I~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          14 SNKELR-ILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             CSSCEE-EEEEEETTSSHHHHHHHTCC
T ss_pred             CCceEE-EEEECCCCCCHHHHHHHHhc
Confidence            334455 55899999999999999864

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.025  Score=46.45  Aligned_cols=21  Identities=29%  Similarity=0.588  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+|+|.+|+||||+++++...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            688999999999999999853

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=92.82  E-value=0.031  Score=49.11  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=29.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEecc
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT  300 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~  300 (403)
                      ..+++.++|+.||||||+.+.++.-.+.++-+.++.
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g   59 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAG   59 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCceEEEECC
Confidence            468999999999999999999987666555565543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.77  E-value=0.026  Score=47.05  Aligned_cols=21  Identities=24%  Similarity=0.548  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.|++||||++.++...
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999999853

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.77  E-value=0.023  Score=50.69  Aligned_cols=35  Identities=31%  Similarity=0.246  Sum_probs=27.0

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEec
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG  299 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~ls  299 (403)
                      ..+++.++|.+||||||+++.+..-+.. .+-+.++
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~   74 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLD   74 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEEC
Confidence            3589999999999999999999876642 2344443

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.76  E-value=0.026  Score=45.89  Aligned_cols=21  Identities=19%  Similarity=0.420  Sum_probs=19.2

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+|+|.+|+||||+.+++...
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999999864

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.026  Score=46.52  Aligned_cols=21  Identities=19%  Similarity=0.540  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.|++||||+..++...
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999764

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.68  E-value=0.027  Score=49.62  Aligned_cols=49  Identities=18%  Similarity=0.243  Sum_probs=34.4

Q ss_pred             hcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHhc
Q 015668          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      +.+-+.+|+|-  +++.+..|+.+++.+.+..   ...++++.-+ +++  +...|-
T Consensus       161 ~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a--~~~drv  215 (230)
T d1l2ta_         161 ANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA--RFGERI  215 (230)
T ss_dssp             TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH--TTSSEE
T ss_pred             hcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH--HhCCEE
Confidence            45678999997  7888999999888888642   5677666554 543  345553

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.66  E-value=0.027  Score=46.01  Aligned_cols=21  Identities=14%  Similarity=0.377  Sum_probs=18.8

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.||+||||+++++...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999999864

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.65  E-value=0.03  Score=46.03  Aligned_cols=24  Identities=33%  Similarity=0.641  Sum_probs=21.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      |-.|+++|.|++||||+.++|...
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            567899999999999999999753

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.61  E-value=0.028  Score=49.19  Aligned_cols=26  Identities=23%  Similarity=0.244  Sum_probs=22.4

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      +..+++.|+||+||||+|+.+++.+.
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            56789999999999999999887653

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=92.61  E-value=0.12  Score=40.51  Aligned_cols=39  Identities=18%  Similarity=0.059  Sum_probs=27.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI  303 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~i  303 (403)
                      +-++.+++++.|||||+.+-.+..+...+..++.-+..+
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~~~~~vli~~P~~~l   45 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAA   45 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHTTTCCEEEEESCHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHcCCcEEEEcChHHH
Confidence            347889999999999999987776665433344444433

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=92.57  E-value=0.021  Score=50.27  Aligned_cols=127  Identities=17%  Similarity=0.234  Sum_probs=68.1

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEeccH------HHHHHhhc----CCCcccCC------ChH------H
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTN------LILEQMKV----PGLLRKHN------YSE------R  321 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls~D------~ir~~l~~----~g~~~~~~------~~~------~  321 (403)
                      ..+++.++|++||||||+.+.++.-+. ..+-+.++..      ..++.+..    ........      +..      .
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~  104 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD  104 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhccccH
Confidence            468999999999999999999987653 3334455321      22322221    01100000      000      0


Q ss_pred             HHHHHHHHHH------------------HHHHHHHHH-hcCCCeEEEeC--CCCCHHHHHHHHHHHhcC---CcEEEEEE
Q 015668          322 FQCLMGRANA------------------IFDVLLSRA-SRTPRNFIIDQ--TNVFKSARKRKLRLFVNF---RKIAVVVF  377 (403)
Q Consensus       322 ~~~~~~~a~~------------------~~~~ll~~a-l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~---~~~~vv~l  377 (403)
                      .+.+.+.++.                  ..+-.+.+| +.+-+.+|+|-  +++.+..+..+++.+.+.   ..+.++++
T Consensus       105 ~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~v  184 (229)
T d3d31a2         105 PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI  184 (229)
T ss_dssp             HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence            0111111110                  011223334 56788999997  778888888777777653   25677766


Q ss_pred             CChHHHHHHHHHhc
Q 015668          378 PKPEDLKIRSVKRF  391 (403)
Q Consensus       378 ~~pe~~~~R~~~R~  391 (403)
                      .-+.+...+...|-
T Consensus       185 tHd~~~~~~~~drv  198 (229)
T d3d31a2         185 THDQTEARIMADRI  198 (229)
T ss_dssp             ESCHHHHHHHCSEE
T ss_pred             cCCHHHHHHhCCEE
Confidence            65533334455553

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.51  E-value=0.03  Score=46.37  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      -.|+++|.|++||||+.+++...
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999999864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.50  E-value=0.029  Score=45.90  Aligned_cols=21  Identities=19%  Similarity=0.479  Sum_probs=18.8

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.+|+||||+.+++...
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            578999999999999999753

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.50  E-value=0.022  Score=48.90  Aligned_cols=36  Identities=22%  Similarity=0.122  Sum_probs=27.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC-CccEEEecc
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGT  300 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~-~~~~v~ls~  300 (403)
                      ..+++.++|+.||||||+.+.++.-++ .++-+.++.
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g   62 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG   62 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECC
Confidence            357889999999999999999987664 334455543

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.45  E-value=0.029  Score=49.67  Aligned_cols=49  Identities=8%  Similarity=0.118  Sum_probs=33.4

Q ss_pred             hcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 015668          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR  390 (403)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~p-e~~~~R~~~R  390 (403)
                      +.+-..+|+|-  +++.+..|..+++.+++..   .+.++++..+ +++ .+...|
T Consensus       142 ~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~-~~~adr  196 (240)
T d2onka1         142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEA-AMLADE  196 (240)
T ss_dssp             TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHH-HHHCSE
T ss_pred             hccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH-HHhCCE
Confidence            56888999998  6778888888887776642   4566666554 444 344444

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.42  E-value=0.03  Score=50.72  Aligned_cols=27  Identities=22%  Similarity=0.281  Sum_probs=23.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~  291 (403)
                      ..+++.++|++||||||+.+.++..+.
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCc
Confidence            358899999999999999999987664

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.32  E-value=0.032  Score=46.17  Aligned_cols=21  Identities=19%  Similarity=0.544  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+|+|.+++||||+.+++...
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999753

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.29  E-value=0.033  Score=45.72  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=19.1

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.+++||||+++++...
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.25  E-value=0.014  Score=47.26  Aligned_cols=21  Identities=33%  Similarity=0.678  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.|++||||+.+++..+
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999754

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.14  E-value=0.034  Score=45.82  Aligned_cols=21  Identities=19%  Similarity=0.458  Sum_probs=18.8

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.+|+||||+.+++...
T Consensus         9 v~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            668999999999999999864

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.11  E-value=0.035  Score=45.08  Aligned_cols=20  Identities=20%  Similarity=0.493  Sum_probs=18.3

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q 015668          269 MMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~  288 (403)
                      |+++|.+|+||||+.+++..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67889999999999999975

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.00  E-value=0.036  Score=46.69  Aligned_cols=21  Identities=19%  Similarity=0.503  Sum_probs=18.7

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.+++||||+..++...
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            678899999999999999864

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.89  E-value=0.039  Score=45.09  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=18.4

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.+|+||||+.+++...
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            567899999999999999853

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.039  Score=45.30  Aligned_cols=21  Identities=19%  Similarity=0.458  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.||+||||+.+++...
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            778999999999999999764

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=91.85  E-value=0.93  Score=34.42  Aligned_cols=101  Identities=24%  Similarity=0.282  Sum_probs=58.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCCCccEEEeccHHHHHHhhcCCCcccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN  346 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~~~~~v~ls~D~ir~~l~~~g~~~~~~~~~~~~~~~~~a~~~~~~ll~~al~~g~~  346 (403)
                      ++|++-|+-.+=|||.|.++.+++.   +-+|....+  ++..+|          .+.+.+..    ++     +....|
T Consensus         1 tliilegpdccfkstvaaklskelk---ypiikgssf--elaksg----------neklfehf----nk-----ladedn   56 (164)
T d2axpa1           1 TLIILEGPDCCFKSTVAAKLSKELK---YPIIKGSSF--ELAKSG----------NEKLFEHF----NK-----LADEDN   56 (164)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHHHT---CCEEECCCH--HHHHHC----------HHHHHHHH----HH-----HTTCCS
T ss_pred             CeEEEeCCchhhHHHHHHHHHhhhc---CceecCchh--hhhhcc----------CHHHHHHH----Hh-----hccccc
Confidence            4789999999999999999999986   433311110  011011          12233222    12     367889


Q ss_pred             EEEeCCCCCHHHH------------HHHHHHHhcC--CcEEEEEECC-hHHHHHHHHHhcc
Q 015668          347 FIIDQTNVFKSAR------------KRKLRLFVNF--RKIAVVVFPK-PEDLKIRSVKRFK  392 (403)
Q Consensus       347 vIlD~Tn~~~~~R------------~~~~~~~~~~--~~~~vv~l~~-pe~~~~R~~~R~~  392 (403)
                      ||+|. +++...-            .+.++.+.+.  .+..+||+.. |..+++|+.-|..
T Consensus        57 viidr-fvysnlvyakkfkdysilterqlrfiedkikakakvvylhadpsvikkrlrvrgd  116 (164)
T d2axpa1          57 VIIDR-FVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGD  116 (164)
T ss_dssp             EEEES-CHHHHHHHTTTBSSCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHTC
T ss_pred             eeeeh-hhhhhhHHHhhcccceehhHHHHHHHHHHhhhheeEEEEecChHHHHHHhccccc
Confidence            99985 2221100            0112222221  2567888877 5899999998864

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=91.79  E-value=0.036  Score=49.02  Aligned_cols=50  Identities=4%  Similarity=0.113  Sum_probs=34.9

Q ss_pred             hcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhc
Q 015668          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF  391 (403)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~p-e~~~~R~~~R~  391 (403)
                      +.+-+.+|+|-  +.+.+..|+.+++.+.+..  ...++++... +++ .+...|-
T Consensus       155 ~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~-~~~~drv  209 (240)
T d1ji0a_         155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGA-LKVAHYG  209 (240)
T ss_dssp             TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHH-HHHCSEE
T ss_pred             HhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HHhCCEE
Confidence            56788999997  7888889988888777643  4666666554 444 3555553

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.73  E-value=0.042  Score=44.84  Aligned_cols=21  Identities=19%  Similarity=0.439  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|-+|+||||+..++...
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999999864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.65  E-value=0.038  Score=49.28  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=26.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEe
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILL  298 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~l  298 (403)
                      ..+++.++|+.||||||+.+.+.--++. .+-+.+
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~   63 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF   63 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEE
Confidence            3689999999999999999999876653 234444

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.63  E-value=0.043  Score=44.78  Aligned_cols=21  Identities=19%  Similarity=0.468  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+|+|.+++||||+..++...
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            788999999999999999864

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.60  E-value=0.043  Score=44.87  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=18.5

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.+|+||||+.+++...
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            578899999999999998753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=91.58  E-value=0.044  Score=44.95  Aligned_cols=21  Identities=29%  Similarity=0.517  Sum_probs=18.6

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+|+|.+++||||+.+++...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999998753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.44  E-value=0.046  Score=44.75  Aligned_cols=21  Identities=14%  Similarity=0.430  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+|+|.+|+|||++.+++...
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            578999999999999999864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.41  E-value=0.027  Score=49.96  Aligned_cols=49  Identities=16%  Similarity=0.338  Sum_probs=33.4

Q ss_pred             hcCCCeEEEeC--CCCCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 015668          341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR  390 (403)
Q Consensus       341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~p-e~~~~R~~~R  390 (403)
                      +.+-..+|+|-  +++.+..+..+++.+.+.+   .+.++++.-+ +++ .+...|
T Consensus       156 ~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~-~~~~dr  210 (242)
T d1oxxk2         156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADI-FAIADR  210 (242)
T ss_dssp             TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHH-HHHCSE
T ss_pred             hhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHH-HHhCCE
Confidence            46788899997  7788888888888777642   5677666554 444 344444

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=91.40  E-value=0.049  Score=50.21  Aligned_cols=33  Identities=21%  Similarity=0.271  Sum_probs=24.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCc-cEEEecc
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEK-RYILLGT  300 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~-~~v~ls~  300 (403)
                      ++++.|+||.|||.+|+.++.+...+ .++.|+.
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~  158 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRF  158 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEB
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEh
Confidence            45568999999999999999885421 2455543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.34  E-value=0.047  Score=44.69  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=18.7

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.+|+||||+++++...
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            678999999999999999754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.33  E-value=0.029  Score=46.22  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=8.1

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+|+|.|++||||+.+++...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999988753

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.25  E-value=0.045  Score=45.62  Aligned_cols=19  Identities=26%  Similarity=0.559  Sum_probs=17.4

Q ss_pred             EEEEccCCCChhHHHHHHH
Q 015668          269 MMMVGLPASGKTTWAEKWV  287 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~  287 (403)
                      |+|+|.+|+||||+..++.
T Consensus         5 ivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            6789999999999999994

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=91.12  E-value=0.048  Score=48.09  Aligned_cols=23  Identities=22%  Similarity=0.211  Sum_probs=20.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .+++++|.||+||||++..++..
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            68889999999999999888754

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.11  E-value=0.027  Score=50.31  Aligned_cols=33  Identities=24%  Similarity=0.277  Sum_probs=25.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEe
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILL  298 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~l  298 (403)
                      .+.+.++|.+||||||+++.+..-+.. .+-+.+
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i   77 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI   77 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhcCCcccccccc
Confidence            578999999999999999988765553 234544

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.06  E-value=0.038  Score=45.83  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=18.5

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |.++|.|++||||+.++|...
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            678999999999999999643

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.04  E-value=0.054  Score=44.26  Aligned_cols=22  Identities=23%  Similarity=0.534  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |+++|.+|+||||+..++....
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~~   27 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5678999999999999998643

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.01  E-value=0.038  Score=45.71  Aligned_cols=21  Identities=24%  Similarity=0.496  Sum_probs=18.6

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |.++|.|++||||+.++|...
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            678999999999999999643

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.99  E-value=0.052  Score=46.88  Aligned_cols=21  Identities=24%  Similarity=0.349  Sum_probs=18.7

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+|+|++|+||||+.+++...
T Consensus         9 illlG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           9 LLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            588999999999999999654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.92  E-value=0.056  Score=44.08  Aligned_cols=22  Identities=18%  Similarity=0.425  Sum_probs=19.2

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |+++|-+|+|||++.+++....
T Consensus         6 ivvvG~~~vGKTsli~r~~~~~   27 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            5789999999999999997653

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.85  E-value=0.057  Score=44.81  Aligned_cols=22  Identities=27%  Similarity=0.320  Sum_probs=19.5

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |+++|-+|+||||+.+++....
T Consensus         8 ivviG~~~vGKTsli~~~~~~~   29 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTTNA   29 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            7889999999999999998653

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.82  E-value=0.057  Score=44.46  Aligned_cols=22  Identities=36%  Similarity=0.362  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |+++|.+|+||||+..++....
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~~   26 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKDQ   26 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5678999999999999998653

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=90.75  E-value=0.057  Score=47.58  Aligned_cols=34  Identities=18%  Similarity=0.167  Sum_probs=26.7

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhCCC-ccEEEe
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILL  298 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~~~-~~~v~l  298 (403)
                      ..+++-++|++||||||+.+.++..... .+-+.+
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i   61 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV   61 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence            4689999999999999999999876653 334444

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.72  E-value=0.079  Score=47.01  Aligned_cols=38  Identities=21%  Similarity=0.201  Sum_probs=29.4

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      +.+++|+++|.=|.||||.|..++..+.  +++..+|+.|
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            4578999999999999997766655442  3457888888

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.70  E-value=0.06  Score=44.12  Aligned_cols=21  Identities=19%  Similarity=0.417  Sum_probs=18.4

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.+|+||||+..++...
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            567899999999999999863

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.62  E-value=0.061  Score=44.81  Aligned_cols=21  Identities=33%  Similarity=0.411  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.+|+||||+.+++...
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            788999999999999998864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.52  E-value=0.064  Score=43.63  Aligned_cols=21  Identities=19%  Similarity=0.504  Sum_probs=18.3

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.+|+||||+.+++...
T Consensus         7 v~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           7 IAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            567899999999999998753

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.49  E-value=0.036  Score=45.59  Aligned_cols=21  Identities=29%  Similarity=0.591  Sum_probs=17.4

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.+|+||||+..++...
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            677899999999999998654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=90.46  E-value=0.064  Score=44.30  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=19.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHh
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~  289 (403)
                      -=|.++|.|++||||+..++...
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            34678899999999999999754

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.20  E-value=0.19  Score=44.91  Aligned_cols=37  Identities=24%  Similarity=0.214  Sum_probs=26.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC--CCccEEEeccH
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN  301 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~--~~~~~v~ls~D  301 (403)
                      ...++.+.|.|||||||+|-+++...  .+...+.|+++
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE   97 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAE   97 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence            35789999999999999987775422  12235667664

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=90.19  E-value=0.061  Score=51.06  Aligned_cols=27  Identities=19%  Similarity=0.254  Sum_probs=23.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      .=+|+++|+.||||||....+.+.++.
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~~~~~  184 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQELNS  184 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             hceEEEEcCCCCCccHHHHHHhhhhcC
Confidence            478999999999999999988887653

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.15  E-value=0.062  Score=47.65  Aligned_cols=25  Identities=12%  Similarity=0.318  Sum_probs=21.4

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHh
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      +..-|+++|.||+||||+...+..+
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC
Confidence            4566888999999999999999854

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=90.13  E-value=0.038  Score=45.24  Aligned_cols=24  Identities=13%  Similarity=0.163  Sum_probs=19.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHh
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~  289 (403)
                      .--|.++|.|++||||+.+++...
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            344778999999999999988643

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.01  E-value=0.073  Score=43.70  Aligned_cols=21  Identities=24%  Similarity=0.417  Sum_probs=18.7

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+++|.+|+||||+.+++...
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999999754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.85  E-value=0.082  Score=43.72  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.2

Q ss_pred             EEEEccCCCChhHHHHHHHHhCC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHP  291 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~  291 (403)
                      |+|+|..|+||||+..++.....
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~~   27 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIHG   27 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            67899999999999999977654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=89.78  E-value=0.086  Score=48.30  Aligned_cols=33  Identities=21%  Similarity=0.275  Sum_probs=25.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhCC--CccEEEec
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLG  299 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls  299 (403)
                      -+++++|++|+|||.+|+.+++.+.  ...++.++
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~   88 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID   88 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred             eEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEe
Confidence            3788999999999999999998762  22356564

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.61  E-value=0.083  Score=43.77  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=18.7

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+|+|.+|+|||++.+++...
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            568999999999999999874

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.26  E-value=0.09  Score=43.86  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=19.1

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |+++|.+|+|||++..++....
T Consensus         6 vvllG~~~vGKTSli~r~~~~~   27 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTNK   27 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6788999999999999997643

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.62  E-value=0.78  Score=38.63  Aligned_cols=20  Identities=25%  Similarity=0.243  Sum_probs=18.0

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q 015668          269 MMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~  288 (403)
                      |.++|=+++||||++.+|..
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            77889999999999999964

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=88.59  E-value=0.11  Score=48.61  Aligned_cols=32  Identities=22%  Similarity=0.249  Sum_probs=25.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCCccEEEe
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL  298 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~~~~v~l  298 (403)
                      +.-++|+|++|.|||.+|++|++.+.. .++.+
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~~~-~~ir~   99 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHLDI-PIAIS   99 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTC-CEEEE
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhccc-ceeeh
Confidence            455899999999999999999987642 24444

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.20  E-value=0.14  Score=43.01  Aligned_cols=29  Identities=28%  Similarity=0.544  Sum_probs=22.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHhCCCccEEEe
Q 015668          268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILL  298 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~~~~~~~v~l  298 (403)
                      +|+++|...||||.||.+++...+  ..+.|
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~--~~~Yi   29 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAP--QVLYI   29 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCS--SEEEE
T ss_pred             CEEEECCCCccHHHHHHHHHhcCC--CcEEE
Confidence            478899999999999999986544  24444

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.04  E-value=0.13  Score=42.17  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=18.6

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |+|+|..|+||||+.+++...
T Consensus         5 ivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            678999999999999999654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=88.03  E-value=0.09  Score=46.71  Aligned_cols=15  Identities=27%  Similarity=0.293  Sum_probs=12.4

Q ss_pred             EEEEccCCCChhHHH
Q 015668          269 MMMVGLPASGKTTWA  283 (403)
Q Consensus       269 ill~GlPGSGKST~A  283 (403)
                      +++.|+|||||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            456799999999874

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.56  E-value=0.14  Score=42.34  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=19.1

Q ss_pred             EEEEccCCCChhHHHHHHHHhC
Q 015668          269 MMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~  290 (403)
                      |+++|.+++||||+..++....
T Consensus         8 i~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           8 LGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            5678999999999999997643

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.05  E-value=0.13  Score=44.78  Aligned_cols=25  Identities=20%  Similarity=0.271  Sum_probs=21.5

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      .+..+++|.+|.||||+.+.|..+.
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchh
Confidence            3577899999999999999997654

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=86.90  E-value=0.17  Score=44.56  Aligned_cols=38  Identities=21%  Similarity=0.220  Sum_probs=28.2

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhCC--CccEEEeccH
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN  301 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~~--~~~~v~ls~D  301 (403)
                      ..-+||+++|.=|.||||.|..|+..+.  +++.++|+.|
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3469999999999999998655544332  2357888887

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=86.53  E-value=0.14  Score=45.98  Aligned_cols=15  Identities=27%  Similarity=0.381  Sum_probs=12.4

Q ss_pred             EEEEccCCCChhHHH
Q 015668          269 MMMVGLPASGKTTWA  283 (403)
Q Consensus       269 ill~GlPGSGKST~A  283 (403)
                      +++.|+|||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            556699999999865

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=86.35  E-value=0.15  Score=47.49  Aligned_cols=21  Identities=33%  Similarity=0.457  Sum_probs=17.6

Q ss_pred             ceEEEEEccCCCChhHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKW  286 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l  286 (403)
                      ..+.++.|.||+||||.+.++
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            468899999999999987554

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=86.03  E-value=0.18  Score=41.51  Aligned_cols=21  Identities=24%  Similarity=0.238  Sum_probs=19.1

Q ss_pred             EEEEccCCCChhHHHHHHHHh
Q 015668          269 MMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~  289 (403)
                      |.++|-|.+||||+.++|...
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            789999999999999999854

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=85.21  E-value=0.34  Score=43.06  Aligned_cols=27  Identities=26%  Similarity=0.335  Sum_probs=24.0

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      ...+++.|+|++||||++..+.+-++.
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            467888999999999999999998864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=84.48  E-value=0.21  Score=42.72  Aligned_cols=27  Identities=11%  Similarity=0.262  Sum_probs=23.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      ...+++.|+|.+|||++|..+.+-+.+
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~~l~G   79 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIHFIQG   79 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHhCC
Confidence            367888999999999999999988764

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.41  E-value=2  Score=35.82  Aligned_cols=24  Identities=13%  Similarity=0.390  Sum_probs=19.1

Q ss_pred             ceEEEEEccCCCChhHHHHHHHHhCCC
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVKDHPE  292 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~~~~~  292 (403)
                      .+.|+++|+   ||+|+.++|.+++|.
T Consensus         9 ~Rpivi~Gp---~K~ti~~~L~~~~p~   32 (199)
T d1kjwa2           9 ARPIIILGP---TKDRANDDLLSEFPD   32 (199)
T ss_dssp             CCCEEEEST---THHHHHHHHHHHCTT
T ss_pred             CCCEEEECc---CHHHHHHHHHHhCcc
Confidence            455666774   699999999998875

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=83.66  E-value=0.26  Score=43.21  Aligned_cols=31  Identities=19%  Similarity=0.259  Sum_probs=22.9

Q ss_pred             EEEEccCCCChhHHHHHHHHhCCCc--cEEEec
Q 015668          269 MMMVGLPASGKTTWAEKWVKDHPEK--RYILLG  299 (403)
Q Consensus       269 ill~GlPGSGKST~A~~l~~~~~~~--~~v~ls  299 (403)
                      |++.|.+|+||+++|+.+...-+..  .++.++
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~   58 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALN   58 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEE
T ss_pred             EEEECCCCcCHHHHHHHHHHhcCCcccccccch
Confidence            5778999999999999997654432  244443

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.63  E-value=0.32  Score=42.31  Aligned_cols=22  Identities=18%  Similarity=0.401  Sum_probs=19.7

Q ss_pred             ceEEEEEccCCCChhHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWV  287 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~  287 (403)
                      ..+++++|+++|||||+.+.+.
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHH
Confidence            4789999999999999998875

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=82.81  E-value=0.33  Score=41.94  Aligned_cols=21  Identities=24%  Similarity=0.490  Sum_probs=18.7

Q ss_pred             eEEEEEccCCCChhHHHHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKWV  287 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~  287 (403)
                      .+++++|+++|||||+.+.+.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhH
Confidence            488999999999999988765

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=82.79  E-value=0.27  Score=43.58  Aligned_cols=26  Identities=23%  Similarity=0.502  Sum_probs=22.3

Q ss_pred             CceEEEEEccCCCChhHHHHHHHHhC
Q 015668          265 DCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       265 ~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ...-|+++|.|.+||||++..|....
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEEecCccchhhhhhhhhccc
Confidence            35668999999999999999998754

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.79  E-value=0.31  Score=41.22  Aligned_cols=27  Identities=7%  Similarity=-0.087  Sum_probs=23.1

Q ss_pred             CCceEEEEEccCCCChhHHHHHHHHhC
Q 015668          264 KDCEVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       264 ~~~~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      +.+.-+++.|.||+||||+|..+++..
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            357789999999999999999988644

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.39  E-value=0.37  Score=41.30  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.3

Q ss_pred             EEEEEccCCCChhHHHHHHHHh
Q 015668          268 VMMMVGLPASGKTTWAEKWVKD  289 (403)
Q Consensus       268 vill~GlPGSGKST~A~~l~~~  289 (403)
                      +|.++|-|.+||||+..+|...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            3788999999999999999754

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=81.97  E-value=0.21  Score=38.30  Aligned_cols=19  Identities=21%  Similarity=0.080  Sum_probs=15.6

Q ss_pred             ceEEEEEccCCCChhHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAE  284 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~  284 (403)
                      .+.+++++.||||||+.|-
T Consensus         7 ~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             TCEEEECCCTTSSTTTTHH
T ss_pred             CCcEEEEcCCCCChhHHHH
Confidence            4677899999999997663

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=80.76  E-value=0.097  Score=42.74  Aligned_cols=23  Identities=26%  Similarity=0.254  Sum_probs=19.3

Q ss_pred             ceEEEEEccCCCChhHHHHHHHH
Q 015668          266 CEVMMMVGLPASGKTTWAEKWVK  288 (403)
Q Consensus       266 ~~vill~GlPGSGKST~A~~l~~  288 (403)
                      ..+.+++|..||||||+...+.-
T Consensus        24 ~~~tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          24 ELVTTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHHHHHSCCSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34677899999999999988864

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.68  E-value=0.4  Score=42.41  Aligned_cols=20  Identities=30%  Similarity=0.405  Sum_probs=17.7

Q ss_pred             eEEEEEccCCCChhHHHHHH
Q 015668          267 EVMMMVGLPASGKTTWAEKW  286 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l  286 (403)
                      .+-+++|..||||||+...+
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHH
Confidence            47889999999999997766

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=80.63  E-value=0.13  Score=44.90  Aligned_cols=24  Identities=13%  Similarity=0.246  Sum_probs=19.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHhC
Q 015668          267 EVMMMVGLPASGKTTWAEKWVKDH  290 (403)
Q Consensus       267 ~vill~GlPGSGKST~A~~l~~~~  290 (403)
                      ...+|+|.+|.||||+.+.|..+.
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ceEEEECCCCccHHHHHHhhccHh
Confidence            456789999999999999997653