Citrus Sinensis ID: 015680

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
Protein Sequence
MRPGPAVARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAENLLLLPLC
Secondary Structure (PSIPRED)
ccccHHHHHHHcHHHHHHHHHHHHccccccHHHHHcccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHHccccHHHcccccccccccHHccHHHHcccHHHEEccccccHHHHccccHHHHHccccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHccEEcccccHHHHHHHHHHHHHHHcccccEEEEEccccccEEEEEcccHHHHHHHccccHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHcccccccEEEEHccccccccccccHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mrpgpavaracgRKEEVRYLLWIRLYpvrkisqtlympyiekvslfkgcssEFINQIVIRLheefflpgeviMEQGNVIDQLYFVCHGVleevgvgedgseetvsqlqpnssfgevsilcnipqpytVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLegkesnlrlKQVESDITFHIGKHEAELALRFnsaayhgdlyQLKGLIragadlnktdydgrsplhlatsrgyeDITLFLIQKgvdinikdkfgntplleaikcghDGVTSLLVKEgaslnvddagSFLCIAVARGDSDLLKRVLsngvdpnsrdydhrtplhvAASEGLYLMAKLLLEAGAsvftkdrwgntpldegrmcgnKNLIKLLEDAkctqlsefhycsQGMIGIAENLLLLPLC
Flexible Loop (DISEMBL)
mrpgpavaracgrkeevrYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNgvdpnsrdydhrTPLHVAASEGLYLMAKLLLEAGASVFTKDRwgntpldegrmcGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAENLLLLPLC
Low Complexity Region (SEG)
MRPGPAVARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFvchgvleevgvgedgseetvSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAENLLLLPLC
Disordered region (IsUnstruct)
*********ACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVG****************FGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGV******YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAENLLLLP**
Disordered Region (DISOPRED)
*RPGPAVARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAENLLLLPLC
Disordered Region (DISEMBL)
**********CGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVG************PNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAENLLLLPLC
Disordered Region (DISPRO)
*****AV**ACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAENLLLLPLC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRPGPAVARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAENLLLLPLC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	403	2.2.26 [Sep-21-2011]
Q9M8S6	828	Potassium channel SKOR OS	yes	no	0.873	0.425	0.768	1e-165
Q94A76	820	Potassium channel GORK OS	no	no	0.873	0.429	0.724	1e-155
Q653P0	858	Potassium channel KOR1 OS	yes	no	0.873	0.410	0.686	1e-150
Q7XUW4	719	Potassium channel KOR2 OS	no	no	0.848	0.475	0.608	1e-129
Q0JKV1	935	Potassium channel AKT1 OS	no	no	0.880	0.379	0.325	1e-46
P0C550	935	Potassium channel AKT1 OS	N/A	no	0.880	0.379	0.325	1e-46
Q8GXE6	888	Potassium channel AKT6 OS	no	no	0.863	0.391	0.330	5e-45
Q38998	857	Potassium channel AKT1 OS	no	no	0.851	0.400	0.323	7e-45
Q9SCX5	880	Probable potassium channe	no	no	0.863	0.395	0.304	6e-44
Q8H569	907	Potassium channel AKT3 OS	no	no	0.841	0.373	0.317	1e-39

>sp|Q9M8S6|SKOR_ARATH Potassium channel SKOR OS=Arabidopsis thaliana GN=SKOR PE=1 SV=1

 Score =  582 bits (1500), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 272/354 (76%), Positives = 317/354 (89%)

Query: 30  KISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGV 89
           KI+QTLY+PYIEKV LF+GCSSEFINQIVIRLHEEFFLPGEVIMEQG+V+DQLYFVCHGV
Sbjct: 388 KIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEFFLPGEVIMEQGSVVDQLYFVCHGV 447

Query: 90  LEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
           LEE+G+ +DGSEE V+ LQP+ SFGE+SILCNIPQPYTVR+ EL R+LR+DKQSF +ILE
Sbjct: 448 LEEIGITKDGSEEIVAVLQPDHSFGEISILCNIPQPYTVRVAELCRILRLDKQSFMNILE 507

Query: 150 IYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGL 209
           I+F DGR++L NLLEGKESN+R+KQ+ESDITFHI K EAELAL+ NSAA++GDLYQLK L
Sbjct: 508 IFFHDGRRILNNLLEGKESNVRIKQLESDITFHISKQEAELALKLNSAAFYGDLYQLKSL 567

Query: 210 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 269
           IRAG D NKTDYDGRSPLHLA SRGYEDITL+LIQ+ VD+NIKDK G+TPLLEAIK G+D
Sbjct: 568 IRAGGDPNKTDYDGRSPLHLAASRGYEDITLYLIQESVDVNIKDKLGSTPLLEAIKNGND 627

Query: 270 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 329
            V +LLVKEGA+LN+++AG+FLC  VA+GDSD LKR+LSNG+DPNS+DYDHRTPLHVAAS
Sbjct: 628 RVAALLVKEGATLNIENAGTFLCTVVAKGDSDFLKRLLSNGIDPNSKDYDHRTPLHVAAS 687

Query: 330 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF 383
           EG Y++A  L+EA A+V  KDRWGNTPLDE   CGNK LIKLLEDAK +Q+S F
Sbjct: 688 EGFYVLAIQLVEASANVLAKDRWGNTPLDEALGCGNKMLIKLLEDAKNSQISSF 741

Highly selective outward-rectifying potassium channel. Involved in potassium release into the xylem sap toward the shoots. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by depolarization. The voltage-dependence of the channel is abolished by internal or external acidification. May interact with the cytoskeleton or with regulatory proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94A76|GORK_ARATH Potassium channel GORK OS=Arabidopsis thaliana GN=GORK PE=1 SV=2

 Score =  549 bits (1414), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 255/352 (72%), Positives = 305/352 (86%)

Query: 30  KISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGV 89
           KI+Q LY+PYI+KV LFKGCS+EFINQIVIRLHEE+FLPGEVI EQGNV+D LYFVC G+
Sbjct: 371 KIAQLLYLPYIKKVPLFKGCSTEFINQIVIRLHEEYFLPGEVITEQGNVVDHLYFVCEGL 430

Query: 90  LEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
           LE +    DGSEE+V+ L P++SFG++SI+CNI QP+TVR+CEL  LLR+DKQSF++ILE
Sbjct: 431 LEALVTKTDGSEESVTLLGPHTSFGDISIICNISQPFTVRVCELCHLLRLDKQSFSNILE 490

Query: 150 IYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGL 209
           IYF DGR +L N++E KESN R+K++ESDI  HIGK EAELAL+ NSAA+ GD YQLK L
Sbjct: 491 IYFHDGRTILNNIMEEKESNDRIKKLESDIVIHIGKQEAELALKVNSAAFQGDFYQLKSL 550

Query: 210 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 269
           IR+GAD NKTDYDGRSPLHLA  RGYEDITLFLIQ+GVD+N+KDKFG+TPL EA+K G +
Sbjct: 551 IRSGADPNKTDYDGRSPLHLAACRGYEDITLFLIQEGVDVNLKDKFGHTPLFEAVKAGQE 610

Query: 270 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 329
           GV  LLVKEGAS N++D+G+FLC  VA+GDSD LKR+LS+G++PNS DYDHRTPLHVAAS
Sbjct: 611 GVIGLLVKEGASFNLEDSGNFLCTTVAKGDSDFLKRLLSSGMNPNSEDYDHRTPLHVAAS 670

Query: 330 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS 381
           EGL+LMAK+L+EAGASV +KDRWGN+PLDE R+CGNK LIKLLED K  Q S
Sbjct: 671 EGLFLMAKMLVEAGASVISKDRWGNSPLDEARLCGNKKLIKLLEDVKNAQSS 722

Major selective outward-rectifying potassium channel of the guard cell membrane. Involved in regulation of stomatal movements according to the water status. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by depolarization. Conductance of the channel is modulated in a potassium-dependent fashion. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q653P0|KOR1_ORYSJ Potassium channel KOR1 OS=Oryza sativa subsp. japonica GN=Os06g0250600 PE=2 SV=1

 Score =  532 bits (1371), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 243/354 (68%), Positives = 299/354 (84%)

Query: 30  KISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGV 89
           KISQTLY PYIE + LFKGCS+EFI QIVIRL EEFFLPGEVI+EQG+ +DQLYFVCHG 
Sbjct: 404 KISQTLYKPYIESIPLFKGCSAEFIQQIVIRLQEEFFLPGEVILEQGSAVDQLYFVCHGA 463

Query: 90  LEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
           LE VG+GEDG EET+  L+P SSFGE+++LCNIPQP+TVR+CEL RLLR+DKQSFT+ILE
Sbjct: 464 LEGVGIGEDGQEETILMLEPESSFGEIAVLCNIPQPFTVRVCELCRLLRLDKQSFTNILE 523

Query: 150 IYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGL 209
           I+F DGR++L+NL E  E   R+KQ+ESDITFHIGK EAEL LR N+AA++GD++QLK L
Sbjct: 524 IFFVDGRRILSNLSESSEYGSRIKQLESDITFHIGKQEAELTLRVNNAAFYGDMHQLKSL 583

Query: 210 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 269
           IRAGAD   TDYDGRSPLHLA  +G+ED+  FL+ +GVDI++ DKFGNTPLLEA+K GHD
Sbjct: 584 IRAGADPKNTDYDGRSPLHLAACKGFEDVVQFLLHEGVDIDLSDKFGNTPLLEAVKQGHD 643

Query: 270 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 329
            V +LL  +GA L++++AGS LC AVARGD+D ++R L+ G DPN+RDYDHR PLH+AA+
Sbjct: 644 RVATLLFSKGAKLSLENAGSHLCTAVARGDTDFVRRALAYGGDPNARDYDHRAPLHIAAA 703

Query: 330 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF 383
           EGLYLMAKLL++AGASVF  DRWG TPLDEGR CG++ +++LLE AK  +LS +
Sbjct: 704 EGLYLMAKLLVDAGASVFATDRWGTTPLDEGRRCGSRTMVQLLEAAKSGELSRY 757

Probable outward-rectifying potassium channel.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XUW4|KOR2_ORYSJ Potassium channel KOR2 OS=Oryza sativa subsp. japonica GN=Os04g0445000 PE=2 SV=2

 Score =  462 bits (1189), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 211/347 (60%), Positives = 280/347 (80%)

Query: 30  KISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGV 89
           K+SQTLY+  + +V LF+GCS +F++QIV++LHEEFFLPGEVI+EQG V+DQ+Y V HG 
Sbjct: 368 KMSQTLYLDMVSRVGLFRGCSDDFLSQIVLKLHEEFFLPGEVILEQGTVVDQIYIVAHGC 427

Query: 90  LEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
           LEEV  GEDGSEE +S+L+P    G+V+++CNIPQPYTVR+CEL  LLRIDKQS TSIL+
Sbjct: 428 LEEVANGEDGSEEIISELRPYGIVGDVAVICNIPQPYTVRVCELCSLLRIDKQSLTSILQ 487

Query: 150 IYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGL 209
           IYF D  ++L+NLL+GKE+  + KQ+ESDIT+ + K E+EL L  N+AAYHGD+++LK L
Sbjct: 488 IYFKDNSQILSNLLKGKETESKRKQLESDITYLLAKQESELVLGVNNAAYHGDIFRLKSL 547

Query: 210 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 269
           I AGAD +K+DYDGR+ LH+A  RGYE+I  FLIQ+G ++N  D+FGN+PLL+A+K GHD
Sbjct: 548 ISAGADPSKSDYDGRTALHIAALRGYENIVRFLIQRGANVNSIDRFGNSPLLQAVKSGHD 607

Query: 270 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 329
            +TSLLV+ GA LN++DAG +LC  V  G  DLLK++L  G+ PN R+YD RTPLH+AA+
Sbjct: 608 RITSLLVEHGAILNLEDAGGYLCRVVRGGRIDLLKKLLRFGISPNCRNYDQRTPLHIAAA 667

Query: 330 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 376
           EGL+L+A  L+E+GA +  KDRWGNTPLDEGR C +K L+++LE A+
Sbjct: 668 EGLHLVASTLIESGADIQAKDRWGNTPLDEGRRCSSKPLVRILEQAR 714

Probable outward-rectifying potassium channel.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0JKV1|AKT1_ORYSJ Potassium channel AKT1 OS=Oryza sativa subsp. japonica GN=AKT1 PE=2 SV=1

 Score =  187 bits (475), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 184/359 (51%), Gaps = 4/359 (1%)

Query: 31  ISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
           ISQ L+   ++ V LF+G S++ I Q+V  +  E+F P E ++ Q       Y +  G +
Sbjct: 405 ISQYLFFHLVQNVYLFQGVSNDLIFQLVSEMKAEYFPPREDVILQNEAPTDFYILVSGSV 464

Query: 91  EEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEI 150
           E V   ++G+++ +         GE+ +LC  PQ +TVR   L +LLR+++ +F SI++ 
Sbjct: 465 ELVE-QQNGADQVIQVATSGEVVGEIGVLCYRPQLFTVRTRSLCQLLRLNRTAFLSIVQS 523

Query: 151 YFCDGRKVLTNL---LEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLK 207
              DG  ++ NL   L+ ++ N  +  V  +I   + +   +L +    A   GD + L 
Sbjct: 524 NVGDGTIIMNNLIQFLKEQKENSVMAGVVKEIESMLARGNLDLPITLCFAVTRGDDFLLH 583

Query: 208 GLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 267
            L++ G D N++D DG + LH+A S+G E     L++ G D N +D  G  PL EA+   
Sbjct: 584 QLLKRGMDPNESDNDGHTALHIAASKGNEQCVRLLLEYGADPNARDSEGKVPLWEALCEK 643

Query: 268 HDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVA 327
           H  V  LLV+ GA L+  D G + CIAV   D++LL  ++  G D N    D  T LH A
Sbjct: 644 HAAVVQLLVEGGADLSSGDTGLYACIAVEESDTELLNDIIHYGGDVNRARRDGTTALHRA 703

Query: 328 ASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYC 386
             +G   MA+LLLE GA +  +D  G TP       G+ ++  L    K    S  H+ 
Sbjct: 704 VCDGNVQMAELLLEHGADIDKQDGNGWTPRALAEQQGHDDIQLLFRSRKAATASGHHHV 762

Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May be a major salt-sensitive potassium channel in roots.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C550|AKT1_ORYSI Potassium channel AKT1 OS=Oryza sativa subsp. indica GN=AKT1 PE=2 SV=1

 Score =  187 bits (475), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 184/359 (51%), Gaps = 4/359 (1%)

Query: 31  ISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
           ISQ L+   ++ V LF+G S++ I Q+V  +  E+F P E ++ Q       Y +  G +
Sbjct: 405 ISQYLFFHLVQNVYLFQGVSNDLIFQLVSEMKAEYFPPREDVILQNEAPTDFYILVSGSV 464

Query: 91  EEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEI 150
           E V   ++G+++ +         GE+ +LC  PQ +TVR   L +LLR+++ +F SI++ 
Sbjct: 465 ELVE-QQNGADQVIQVATSGEVVGEIGVLCYRPQLFTVRTRSLCQLLRLNRTAFLSIVQS 523

Query: 151 YFCDGRKVLTNL---LEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLK 207
              DG  ++ NL   L+ ++ N  +  V  +I   + +   +L +    A   GD + L 
Sbjct: 524 NVGDGTIIMNNLIQFLKEQKENSVMAGVVKEIESMLARGNLDLPITLCFAVTRGDDFLLH 583

Query: 208 GLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 267
            L++ G D N++D DG + LH+A S+G E     L++ G D N +D  G  PL EA+   
Sbjct: 584 QLLKRGMDPNESDNDGHTALHIAASKGNEQCVRLLLEYGADPNARDSEGKVPLWEALCEK 643

Query: 268 HDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVA 327
           H  V  LLV+ GA L+  D G + CIAV   D++LL  ++  G D N    D  T LH A
Sbjct: 644 HAAVVQLLVEGGADLSSGDTGLYACIAVEESDTELLNDIIHYGGDVNRARRDGTTALHRA 703

Query: 328 ASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYC 386
             +G   MA+LLLE GA +  +D  G TP       G+ ++  L    K    S  H+ 
Sbjct: 704 VCDGNVQMAELLLEHGADIDKQDGNGWTPRALAEQQGHDDIQLLFRSRKAATASGHHHV 762

Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8GXE6|AKT6_ARATH Potassium channel AKT6 OS=Arabidopsis thaliana GN=AKT6 PE=1 SV=2

 Score =  182 bits (461), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 116/351 (33%), Positives = 184/351 (52%), Gaps = 3/351 (0%)

Query: 31  ISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
           IS  L+   ++K+ LF G S++ + Q+V  +  E+F P E ++ Q       Y +  G +
Sbjct: 384 ISHYLFYEVVDKIYLFHGISNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDFYILVTGAV 443

Query: 91  EEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEI 150
           + +    +G E+ VS+ Q    FGEV +LC  PQ +TVR   LS+LLR+++    ++++ 
Sbjct: 444 DIIA-RVNGVEQVVSEAQRGHVFGEVGVLCYRPQLFTVRTKRLSQLLRLNRTVLLNLVQA 502

Query: 151 YFCDGRKVLTNLLEG-KES-NLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKG 208
              DG  ++ NLL+  K+S +  +K V +D    + + + +L L    AA  GD   L  
Sbjct: 503 NVGDGAIIMNNLLQHLKDSEDPVMKGVLADTEHMLAQGKMDLPLSLCFAAARGDDLLLHQ 562

Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
           L+R G+  N+ D DGR+ LH+A S+G     + L++ G D NI+D  GN PL EAI   H
Sbjct: 563 LLRRGSSPNEMDKDGRTALHIAASKGSHYCVVLLLEHGADPNIRDSEGNVPLWEAIIGRH 622

Query: 269 DGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 328
             +  LL + GA L++D    F  +AV +   D LK ++  G D    D +  T LH A 
Sbjct: 623 REIAKLLAENGAKLSLDSVSYFSGLAVEKNCLDALKDIIKYGGDVTLPDGNGTTALHRAV 682

Query: 329 SEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ 379
           SEG   + K LL+ GA +   D +G TP       GN+ +  L  + +  +
Sbjct: 683 SEGHLEIVKFLLDQGADLDWPDSYGWTPRGLADHQGNEEIKTLFHNHRPVE 733

Highly selective inward-rectifying potassium channel that could mediate potassium uptake in the pollen membrane. Plays an important role in pollen tube development. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38998|AKT1_ARATH Potassium channel AKT1 OS=Arabidopsis thaliana GN=AKT1 PE=1 SV=2

 Score =  181 bits (460), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 186/346 (53%), Gaps = 3/346 (0%)

Query: 31  ISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
           IS  L+   ++KV LF+G S++ + Q+V  +  E+F P E ++ Q       Y + +G  
Sbjct: 358 ISHFLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVNGTA 417

Query: 91  EEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEI 150
           + V V + G+E  V +++     GE+ +LC  PQ +TVR   L +LLR+++ +F +I++ 
Sbjct: 418 DLVDV-DTGTESIVREVKAGDIIGEIGVLCYRPQLFTVRTKRLCQLLRMNRTTFLNIIQA 476

Query: 151 YFCDGRKVLTNLLEG-KESN-LRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKG 208
              DG  ++ NLL+  KE N   +  V  +I   + + + +L L    AA   D   L  
Sbjct: 477 NVGDGTIIMNNLLQHLKEMNDPVMTNVLLEIENMLARGKMDLPLNLCFAAIREDDLLLHQ 536

Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
           L++ G D N++D +GR+PLH+A S+G  +  L L++   D N +D  G+ PL EA+  GH
Sbjct: 537 LLKRGLDPNESDNNGRTPLHIAASKGTLNCVLLLLEYHADPNCRDAEGSVPLWEAMVEGH 596

Query: 269 DGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 328
           + V  +L++ G++++  D G F C A  +G+  LLK ++ +G D         + LH A 
Sbjct: 597 EKVVKVLLEHGSTIDAGDVGHFACTAAEQGNLKLLKEIVLHGGDVTRPRATGTSALHTAV 656

Query: 329 SEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 374
            E    M K LLE GA V  +D  G TP D     G++++  L  +
Sbjct: 657 CEENIEMVKYLLEQGADVNKQDMHGWTPRDLAEQQGHEDIKALFRE 702

Highly selective inward-rectifying potassium channel that mediate potassium uptake by plant roots in response to low K(+) conditions, by a calcium-, CBL-, and CIPK-dependent pathway. Involved in the stomatal regulation by monitoring the turgor pressure in guard cells. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCX5|AKT5_ARATH Probable potassium channel AKT5 OS=Arabidopsis thaliana GN=AKT5 PE=2 SV=2

 Score =  178 bits (452), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 107/351 (30%), Positives = 189/351 (53%), Gaps = 3/351 (0%)

Query: 31  ISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
           IS  L+   ++K  LF G S++ + Q+V  +  E+F P E ++ +       Y +  G +
Sbjct: 382 ISHYLFYEVVDKTYLFHGISNDLLFQLVSEMKAEYFPPKEDVILRNEAPSDFYIMVTGAV 441

Query: 91  EEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEI 150
           + +    +G ++ V + Q    FGEV +LC  PQ +TVR   LS+LLR+++ +F ++++ 
Sbjct: 442 DIIA-RVNGVDQVVGEAQTGHVFGEVGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNLVQA 500

Query: 151 YFCDGRKVLTNLLE--GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKG 208
              DG  ++ NLL+     ++  +K + ++    + + + +L L    AA  GD   L  
Sbjct: 501 NVGDGAIIMNNLLQHLKDSTDPVMKGILAETELMLAQGKMDLPLSLCFAAARGDDLLLHQ 560

Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
           L++ G++ N+TD +GR+ LH+A S+G +   + L++ G D NI+D  G+ PL EAI   H
Sbjct: 561 LLKRGSNPNETDKNGRTALHIAASKGSQYCVVLLLEHGADPNIRDSEGSVPLWEAIIGRH 620

Query: 269 DGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 328
           +    LL + GA+L+ D  G F C+AV + + + LK ++  G D +  D +  T LH A 
Sbjct: 621 EENAKLLSENGATLSFDTVGYFSCLAVGQNNLNALKDIVKYGGDISLSDVNGTTALHRAV 680

Query: 329 SEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ 379
           SEG   + + LLE GA +   D +G T        G++++  L  + +  +
Sbjct: 681 SEGNLEIVQFLLEKGADMDKPDVYGWTARALAEHQGHEDIKALFYNQRPVE 731

Probable potassium channel. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H569|AKT3_ORYSJ Potassium channel AKT3 OS=Oryza sativa subsp. japonica GN=Os07g0175400 PE=3 SV=1

 Score =  164 bits (415), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/347 (31%), Positives = 173/347 (49%), Gaps = 8/347 (2%)

Query: 30  KISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGV 89
            IS  L+   ++ V LF+G S++ I Q+V  ++ E+F P E I+ Q       Y +  G 
Sbjct: 373 SISHHLFFGLVQNVYLFEGVSNDLIFQLVSEMNAEYFAPREDIILQNEAPADFYIIVSGS 432

Query: 90  LEEVGVGEDGSEETVSQL----QPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFT 145
           +E + +     + +V  L    +     GE+ +LC  PQ +T R   L +LLR+D+ +F 
Sbjct: 433 MELIELHNGIEQASVLTLAGMAKSGDVVGEIGVLCYRPQLFTARTRSLCQLLRLDRAAFL 492

Query: 146 SILEIYFCDGRKVLTNL---LEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGD 202
            I++    DG  V+ NL   L  K+    +  V  +I   + + + +  +    AA  GD
Sbjct: 493 RIIQSNIADGTIVMNNLIQYLREKKEIASIVAVAKEIDDMLARGQMDFPITLCFAASKGD 552

Query: 203 LYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE 262
            + L  L++ G D N++D+ GR+ LH+A S G E     L++ G D N +D  G  PL E
Sbjct: 553 SFLLHQLLKRGLDPNESDHYGRTALHIAASNGNEQCVRLLLENGADSNSRDPEGRVPLWE 612

Query: 263 AIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR-DYDHR 321
           A+   H  V  LLV  GA L+  DA  +  +AV + D+ LL  ++ +G D +     D  
Sbjct: 613 ALCRRHQTVVQLLVDAGADLSGGDAAPYARVAVEQNDAALLGEIVRHGGDVSGACSGDGT 672

Query: 322 TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 368
           T LH A  +G   MA+LLLE GA    +D  G TP       G+ ++
Sbjct: 673 TALHRAVLDGNVQMARLLLEHGADADAEDVNGLTPRAVAEQGGHADM 719

Probable inward-rectifying potassium channel. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
224065090	841	predicted protein [Populus trichocarpa]	0.885	0.424	0.852	0.0
224079588	821	predicted protein [Populus trichocarpa]	0.885	0.434	0.841	1e-177
356552003	850	PREDICTED: potassium channel SKOR-like [	0.875	0.415	0.844	1e-176
356499077	849	PREDICTED: potassium channel SKOR-like [	0.875	0.415	0.838	1e-176
255585584	445	Potassium channel SKOR, putative [Ricinu	0.878	0.795	0.833	1e-174
147777957	559	hypothetical protein VITISV_022830 [Viti	0.890	0.642	0.807	1e-173
225451365	794	PREDICTED: potassium channel SKOR [Vitis	0.885	0.449	0.805	1e-172
449479935	828	PREDICTED: potassium channel SKOR-like [	0.890	0.433	0.796	1e-172
449445216	828	PREDICTED: potassium channel SKOR-like [	0.890	0.433	0.796	1e-172
15232991	828	Potassium channel SKOR [Arabidopsis thal	0.878	0.427	0.768	1e-163

>gi|224065090|ref|XP_002301665.1| predicted protein [Populus trichocarpa] gi|222843391|gb|EEE80938.1| predicted protein [Populus trichocarpa]

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/359 (85%), Positives = 329/359 (91%)

Query: 30  KISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGV 89
           K+SQTLY  YIEKV L KGCS+EFINQIVIRLHEEFFLPGEVIMEQGNV+DQLYFVCHGV
Sbjct: 397 KVSQTLYTEYIEKVPLLKGCSAEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGV 456

Query: 90  LEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
           LEEVG+G+DGSEETV  L PNSSFGE+SILCNIPQPYTVR+CEL RLLRIDKQSF++ILE
Sbjct: 457 LEEVGIGQDGSEETVKLLPPNSSFGEISILCNIPQPYTVRVCELCRLLRIDKQSFSNILE 516

Query: 150 IYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGL 209
           IYF DGRK+L NLLEGKESNLR KQ+ESDITFHIGK EAELALR NSAAYHGDLYQLKG 
Sbjct: 517 IYFYDGRKILDNLLEGKESNLRDKQLESDITFHIGKQEAELALRVNSAAYHGDLYQLKGF 576

Query: 210 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 269
           IRAGAD N+TDYDGRSPLHLA SRGYEDITLFLIQ+GVDINIKDKFGNTPLLEAIK GHD
Sbjct: 577 IRAGADPNRTDYDGRSPLHLAASRGYEDITLFLIQEGVDINIKDKFGNTPLLEAIKNGHD 636

Query: 270 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 329
            V SLL K+GA LN+DDAGS LC AVARGDSD LKR+LSNG+DPNS+DYDHRTPLHVAAS
Sbjct: 637 RVESLLFKQGAILNIDDAGSVLCRAVARGDSDFLKRILSNGIDPNSKDYDHRTPLHVAAS 696

Query: 330 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQ 388
           EGLYLMAKLL+EAGASVF+KDRWGNTPLDEGRMCGNK LIKLLE+AK +Q  EFHY + 
Sbjct: 697 EGLYLMAKLLIEAGASVFSKDRWGNTPLDEGRMCGNKKLIKLLEEAKSSQKLEFHYSTH 755

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079588|ref|XP_002305894.1| predicted protein [Populus trichocarpa] gi|222848858|gb|EEE86405.1| predicted protein [Populus trichocarpa]

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 302/359 (84%), Positives = 326/359 (90%)

Query: 30  KISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGV 89
           KISQTLY  YIEKV L K CS+EFINQIVIRLHEEFFLPGEVIMEQGNV+DQLYFVCHGV
Sbjct: 385 KISQTLYTEYIEKVPLVKDCSAEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGV 444

Query: 90  LEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
           LEEVG+G+DGSEETV  L PNSSFGE+SILCNIPQPYTVR+CEL RLLRIDKQS ++ILE
Sbjct: 445 LEEVGIGQDGSEETVKLLPPNSSFGEISILCNIPQPYTVRVCELCRLLRIDKQSLSNILE 504

Query: 150 IYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGL 209
           IYF DGR++L NLLEGKESNL+ KQ+ESDITFHIGK EAELALR NS AYHGDLYQLKGL
Sbjct: 505 IYFYDGRRILDNLLEGKESNLQYKQLESDITFHIGKQEAELALRVNSTAYHGDLYQLKGL 564

Query: 210 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 269
           IRAGAD N+TDYDGRSPLHLA SRGYED TLFLIQ+GVDINIKDKFGNTPLLEAIK GHD
Sbjct: 565 IRAGADPNRTDYDGRSPLHLAASRGYEDTTLFLIQEGVDINIKDKFGNTPLLEAIKNGHD 624

Query: 270 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 329
            V SLL ++GA LN+DDAGS LC AVARGDSD LKRVLSNG+DPNS+DYDHRTPLHVAAS
Sbjct: 625 RVASLLSEQGAILNIDDAGSVLCRAVARGDSDFLKRVLSNGIDPNSKDYDHRTPLHVAAS 684

Query: 330 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQ 388
           EGLYLMAKLL+EAGASVF+KDRWGNTPL EGR+CGNKNLIKLLE+AK +Q  EFHY S 
Sbjct: 685 EGLYLMAKLLIEAGASVFSKDRWGNTPLVEGRICGNKNLIKLLEEAKSSQKLEFHYASH 743

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552003|ref|XP_003544361.1| PREDICTED: potassium channel SKOR-like [Glycine max]

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 299/354 (84%), Positives = 327/354 (92%), Gaps = 1/354 (0%)

Query: 30  KISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGV 89
           KISQTLY+PYIEKVSLFKGCSSEFI QIVIRLHEEFFLPGEVIMEQGNV+DQLYFVCHGV
Sbjct: 412 KISQTLYLPYIEKVSLFKGCSSEFIRQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGV 471

Query: 90  LEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
           LEEVG  EDG+EETVS LQPNSSFGE+SILCNIPQPYTVR+CELSRLLR+DKQSFT+IL+
Sbjct: 472 LEEVGTAEDGTEETVSLLQPNSSFGEISILCNIPQPYTVRVCELSRLLRLDKQSFTNILD 531

Query: 150 IYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGL 209
           IYF DGRKVL NLLEGKES  R KQ+ESDITFHIGK EAELAL+ N+AA++GDLYQLKGL
Sbjct: 532 IYFYDGRKVLNNLLEGKES-FRDKQLESDITFHIGKQEAELALKVNNAAFNGDLYQLKGL 590

Query: 210 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 269
           IRAGAD NKTDYDGRSPLHLA SRGYEDITLFLIQ+ VD+NIKD FGNTPLLEA+K GHD
Sbjct: 591 IRAGADPNKTDYDGRSPLHLAASRGYEDITLFLIQERVDVNIKDNFGNTPLLEAVKNGHD 650

Query: 270 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 329
            V SLLV+EGAS+ +++AGSFLC AVARGDSD LKR+LSNG+DPN +DYD+R+PLH+AA+
Sbjct: 651 RVASLLVREGASMKIENAGSFLCTAVARGDSDYLKRLLSNGMDPNLKDYDYRSPLHIAAA 710

Query: 330 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF 383
           EGLY MAKLLLE GASVFTKDRWGNTPLDE RMCGNKNLIKLLEDAK  QLSEF
Sbjct: 711 EGLYFMAKLLLEGGASVFTKDRWGNTPLDEARMCGNKNLIKLLEDAKSAQLSEF 764

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499077|ref|XP_003518370.1| PREDICTED: potassium channel SKOR-like [Glycine max]

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 297/354 (83%), Positives = 328/354 (92%), Gaps = 1/354 (0%)

Query: 30  KISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGV 89
           KISQTLY+PYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNV+DQLYFVCHGV
Sbjct: 411 KISQTLYLPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGV 470

Query: 90  LEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
           LEEVG+ EDG+EETVS LQPNSSFGE+SILCNIPQPYTVR+CEL RLLR+DKQSFT+IL+
Sbjct: 471 LEEVGIAEDGTEETVSLLQPNSSFGEISILCNIPQPYTVRVCELGRLLRLDKQSFTNILD 530

Query: 150 IYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGL 209
           IYF DGRKVL NLLEGKES  R KQ+ESDITFH+GK EAELAL+ NSAA++GD+YQLKGL
Sbjct: 531 IYFYDGRKVLYNLLEGKES-FRDKQLESDITFHLGKQEAELALKVNSAAFNGDMYQLKGL 589

Query: 210 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 269
           IRAGAD NK DYDGRSPLHLA SRGYEDIT+FLIQ+ VD+NI D FGNTPLLEA+K GHD
Sbjct: 590 IRAGADPNKADYDGRSPLHLAASRGYEDITIFLIQERVDVNIIDNFGNTPLLEAVKNGHD 649

Query: 270 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 329
            V SLLVKEGAS+ +++AGSFLC AVARGDSD LKR+LSNG+DPN +DYD+R+PLHVAA+
Sbjct: 650 RVASLLVKEGASMKIENAGSFLCTAVARGDSDYLKRLLSNGMDPNLKDYDYRSPLHVAAA 709

Query: 330 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF 383
           EGLY MAKLLLEAGASVFT+DRWGNTPLDE RMCGNKNLIKLLEDAK +QLSEF
Sbjct: 710 EGLYFMAKLLLEAGASVFTRDRWGNTPLDEARMCGNKNLIKLLEDAKSSQLSEF 763

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585584|ref|XP_002533481.1| Potassium channel SKOR, putative [Ricinus communis] gi|223526674|gb|EEF28913.1| Potassium channel SKOR, putative [Ricinus communis]

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 295/354 (83%), Positives = 321/354 (90%)

Query: 30  KISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGV 89
           +ISQTLYMPYIEKV LFK CS+EFINQIVIRLHEEFFLPGEVIMEQGN +DQLYFVCHGV
Sbjct: 2   QISQTLYMPYIEKVPLFKECSAEFINQIVIRLHEEFFLPGEVIMEQGNAVDQLYFVCHGV 61

Query: 90  LEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
           LE V   EDGSEET S LQPNSSFGE+SILCNIPQPYT+R+CEL RLLRIDKQSF++ILE
Sbjct: 62  LEMVATSEDGSEETASLLQPNSSFGEISILCNIPQPYTIRVCELCRLLRIDKQSFSNILE 121

Query: 150 IYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGL 209
           IYF DGRK++ N+ EGKES+LR KQ+ESDITFHIGK EAELALR NSAAYHGDLYQLKG 
Sbjct: 122 IYFYDGRKIVNNIFEGKESSLRDKQLESDITFHIGKQEAELALRVNSAAYHGDLYQLKGF 181

Query: 210 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 269
           +RAGAD N+TDYDGRSPLHLA SRGYEDI  FLIQ+GVDINIKDKFGNTPLLEAIK GHD
Sbjct: 182 VRAGADPNRTDYDGRSPLHLAASRGYEDIACFLIQEGVDINIKDKFGNTPLLEAIKSGHD 241

Query: 270 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 329
            V SLLVKEGA L +DDAGSFLC  V +GDSDLL+R+LSNG++PNS+DYDHRTPLHVAAS
Sbjct: 242 HVASLLVKEGAELRMDDAGSFLCSTVLKGDSDLLRRILSNGINPNSKDYDHRTPLHVAAS 301

Query: 330 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF 383
           EGLY+MAKLLLEAGASV +KDRWG TPLDEGR+ GNKNLIKLLEDAK TQLSEF
Sbjct: 302 EGLYMMAKLLLEAGASVCSKDRWGKTPLDEGRISGNKNLIKLLEDAKSTQLSEF 355

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777957|emb|CAN64951.1| hypothetical protein VITISV_022830 [Vitis vinifera]

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 290/359 (80%), Positives = 321/359 (89%)

Query: 30  KISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGV 89
           KI+QTLY P +EKVSLF+GCS E INQIVIR+HEEFFLPGEVIMEQGNV+DQLYFVCHG+
Sbjct: 116 KIAQTLYKPLVEKVSLFRGCSLELINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGM 175

Query: 90  LEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
           LEE+G+G DGSEETV  LQPNSSFGE+SILCNIPQPYTVR+ EL RLLR+DKQSFT ILE
Sbjct: 176 LEEIGIGADGSEETVLPLQPNSSFGEISILCNIPQPYTVRVLELCRLLRLDKQSFTDILE 235

Query: 150 IYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGL 209
           IYF DGR++L NLLEGKESNLR+KQ+ESDITFHIG+ EAELALR NSA+YHGDLYQLK L
Sbjct: 236 IYFYDGRRILNNLLEGKESNLRVKQLESDITFHIGRQEAELALRVNSASYHGDLYQLKSL 295

Query: 210 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 269
           IRAGAD NKTDYDGRSPLHLA++RG+EDI  FLIQ+GVD+NI D FGNTPLLEAIK  HD
Sbjct: 296 IRAGADPNKTDYDGRSPLHLASARGFEDIVTFLIQEGVDVNISDNFGNTPLLEAIKNAHD 355

Query: 270 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 329
            V SLLV +GA L +DDAG FLC  +ARGDSD LKR+LSNG+DPNS+DYDHRTPLHVAAS
Sbjct: 356 RVASLLVNKGALLKIDDAGGFLCATIARGDSDFLKRILSNGIDPNSKDYDHRTPLHVAAS 415

Query: 330 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQ 388
           EGLY MAKLLLEAGASVF+KDRWGNTPLDEG  CGNKNL+KLLEDAK  QLSEF  CS+
Sbjct: 416 EGLYFMAKLLLEAGASVFSKDRWGNTPLDEGWKCGNKNLMKLLEDAKVAQLSEFPDCSR 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451365|ref|XP_002262949.1| PREDICTED: potassium channel SKOR [Vitis vinifera] gi|296087079|emb|CBI33453.3| unnamed protein product [Vitis vinifera]

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 289/359 (80%), Positives = 320/359 (89%)

Query: 30  KISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGV 89
           KI+QTLY P +EKVSLF+GCS E INQIVIR+HEEFFLPGEVIMEQGNV+DQLYFVCHG+
Sbjct: 351 KIAQTLYKPLVEKVSLFRGCSLELINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGM 410

Query: 90  LEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
           LEE+G+G DGSEETV  LQPNSSFGE+SILCNIPQPYTVR+ EL RLLR+DKQSFT ILE
Sbjct: 411 LEEIGIGADGSEETVLPLQPNSSFGEISILCNIPQPYTVRVLELCRLLRLDKQSFTDILE 470

Query: 150 IYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGL 209
           IYF DGR++L NLLEGKESNLR+KQ+ESDITFHIG+ EAELALR NSA+YHGDLYQLK L
Sbjct: 471 IYFYDGRRILNNLLEGKESNLRVKQLESDITFHIGRQEAELALRVNSASYHGDLYQLKSL 530

Query: 210 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 269
           IRAGAD NKTDYDGRSPLHLA++RG+EDI  FLIQ+GVD+NI D FGNTPLLEAIK  HD
Sbjct: 531 IRAGADPNKTDYDGRSPLHLASARGFEDIVTFLIQEGVDVNISDNFGNTPLLEAIKNAHD 590

Query: 270 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 329
            V SLLV +GA L +DDAG FLC  +ARGDSD LKR+LSNG+DPNS+DYDHRTPLHVAAS
Sbjct: 591 RVASLLVNKGALLKIDDAGGFLCATIARGDSDFLKRILSNGIDPNSKDYDHRTPLHVAAS 650

Query: 330 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQ 388
           EGLY MAKLLLEA ASVF+KDRWGNTPLDEG  CGNKNL+KLLEDAK  QLSEF  CS+
Sbjct: 651 EGLYFMAKLLLEARASVFSKDRWGNTPLDEGWKCGNKNLMKLLEDAKVAQLSEFPDCSR 709

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479935|ref|XP_004155751.1| PREDICTED: potassium channel SKOR-like [Cucumis sativus]

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 286/359 (79%), Positives = 328/359 (91%)

Query: 30  KISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGV 89
           KISQTLY+PY++ VSLF+GCS EFINQIVIRLHEEFFLPGEVIMEQGNV+DQLYFVCHGV
Sbjct: 387 KISQTLYLPYVQNVSLFRGCSPEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGV 446

Query: 90  LEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
           LEE+G+G+D SEET+  LQPNSSFGE+SILCNIPQPYTVR+CEL RLLRIDKQSFT+IL+
Sbjct: 447 LEELGIGQDSSEETIDLLQPNSSFGEISILCNIPQPYTVRVCELCRLLRIDKQSFTNILD 506

Query: 150 IYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGL 209
           IYF DGRK+L NLLEGKE+NLR+KQ+ESDITFHIGK EAELAL+ NSAAYHGDLYQLKGL
Sbjct: 507 IYFYDGRKILNNLLEGKETNLRVKQLESDITFHIGKQEAELALKVNSAAYHGDLYQLKGL 566

Query: 210 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 269
           +RAGAD NKTDYDGRSPLHLA SRG+EDI +FLIQ+GV+I++KD FGNTPL+EAIK G+D
Sbjct: 567 VRAGADPNKTDYDGRSPLHLAASRGFEDIVVFLIQEGVNIDLKDNFGNTPLMEAIKNGND 626

Query: 270 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 329
            V  LL KEGASL VD+ GSFLC AV+RGDSDL+KR+L  G+DPNS+DYD RTPLH+A S
Sbjct: 627 QVAVLLSKEGASLKVDNPGSFLCTAVSRGDSDLVKRLLCYGIDPNSKDYDSRTPLHIAVS 686

Query: 330 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQ 388
           EGL LMAKLLLE+GASVF+KDRWGNTPLDEGR+CGNKN++KLLE+AK +QLSE  Y S+
Sbjct: 687 EGLTLMAKLLLESGASVFSKDRWGNTPLDEGRICGNKNMLKLLEEAKASQLSESPYSSR 745

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445216|ref|XP_004140369.1| PREDICTED: potassium channel SKOR-like [Cucumis sativus]

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 286/359 (79%), Positives = 328/359 (91%)

Query: 30  KISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGV 89
           KISQTLY+PY++ VSLF+GCS EFINQIVIRLHEEFFLPGEVIMEQGNV+DQLYFVCHGV
Sbjct: 387 KISQTLYLPYVQNVSLFRGCSPEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGV 446

Query: 90  LEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
           LEE+G+G+D SEET+  LQPNSSFGE+SILCNIPQPYTVR+CEL RLLRIDKQSFT+IL+
Sbjct: 447 LEELGIGQDSSEETIDLLQPNSSFGEISILCNIPQPYTVRVCELCRLLRIDKQSFTNILD 506

Query: 150 IYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGL 209
           IYF DGRK+L NLLEGKE+NLR+KQ+ESDITFHIGK EAELAL+ NSAAYHGDLYQLKGL
Sbjct: 507 IYFYDGRKILNNLLEGKETNLRVKQLESDITFHIGKQEAELALKVNSAAYHGDLYQLKGL 566

Query: 210 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 269
           +RAGAD NKTDYDGRSPLHLA SRG+EDI +FLIQ+GV+I++KD FGNTPL+EAIK G+D
Sbjct: 567 VRAGADPNKTDYDGRSPLHLAASRGFEDIVVFLIQEGVNIDLKDNFGNTPLMEAIKNGND 626

Query: 270 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 329
            V  LL KEGASL VD+ GSFLC AV+RGDSDL+KR+L  G+DPNS+DYD RTPLH+A S
Sbjct: 627 QVAVLLSKEGASLKVDNPGSFLCTAVSRGDSDLVKRLLCYGIDPNSKDYDSRTPLHIAVS 686

Query: 330 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQ 388
           EGL LMAKLLLE+GASVF+KDRWGNTPLDEGR+CGNKN++KLLE+AK +QLSE  Y S+
Sbjct: 687 EGLTLMAKLLLESGASVFSKDRWGNTPLDEGRICGNKNMLKLLEEAKASQLSESPYSSR 745

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232991|ref|NP_186934.1| Potassium channel SKOR [Arabidopsis thaliana] gi|44888539|sp|Q9M8S6.1|SKOR_ARATH RecName: Full=Potassium channel SKOR; AltName: Full=Stelar K(+) outward rectifying channel gi|6728977|gb|AAF26975.1|AC018363_20 stelar K+ outward rectifying channel (SKOR) [Arabidopsis thaliana] gi|332640345|gb|AEE73866.1| Potassium channel SKOR [Arabidopsis thaliana]

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 272/354 (76%), Positives = 317/354 (89%)

Query: 30  KISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGV 89
           KI+QTLY+PYIEKV LF+GCSSEFINQIVIRLHEEFFLPGEVIMEQG+V+DQLYFVCHGV
Sbjct: 388 KIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEFFLPGEVIMEQGSVVDQLYFVCHGV 447

Query: 90  LEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
           LEE+G+ +DGSEE V+ LQP+ SFGE+SILCNIPQPYTVR+ EL R+LR+DKQSF +ILE
Sbjct: 448 LEEIGITKDGSEEIVAVLQPDHSFGEISILCNIPQPYTVRVAELCRILRLDKQSFMNILE 507

Query: 150 IYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGL 209
           I+F DGR++L NLLEGKESN+R+KQ+ESDITFHI K EAELAL+ NSAA++GDLYQLK L
Sbjct: 508 IFFHDGRRILNNLLEGKESNVRIKQLESDITFHISKQEAELALKLNSAAFYGDLYQLKSL 567

Query: 210 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 269
           IRAG D NKTDYDGRSPLHLA SRGYEDITL+LIQ+ VD+NIKDK G+TPLLEAIK G+D
Sbjct: 568 IRAGGDPNKTDYDGRSPLHLAASRGYEDITLYLIQESVDVNIKDKLGSTPLLEAIKNGND 627

Query: 270 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 329
            V +LLVKEGA+LN+++AG+FLC  VA+GDSD LKR+LSNG+DPNS+DYDHRTPLHVAAS
Sbjct: 628 RVAALLVKEGATLNIENAGTFLCTVVAKGDSDFLKRLLSNGIDPNSKDYDHRTPLHVAAS 687

Query: 330 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF 383
           EG Y++A  L+EA A+V  KDRWGNTPLDE   CGNK LIKLLEDAK +Q+S F
Sbjct: 688 EGFYVLAIQLVEASANVLAKDRWGNTPLDEALGCGNKMLIKLLEDAKNSQISSF 741

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
TAIR|locus:2075442	828	SKOR "STELAR K+ outward rectif	0.878	0.427	0.725	2.3e-144
TAIR|locus:2169866	820	GORK "gated outwardly-rectifyi	0.873	0.429	0.693	1e-139
TAIR|locus:2043839	857	KT1 "AT2G26650" [Arabidopsis t	0.851	0.400	0.306	1.2e-38
TAIR|locus:2127866	880	KT5 "K+ transporter 5" [Arabid	0.799	0.365	0.328	1.3e-38
TAIR|locus:2132065	802	KT2/3 "potassium transport 2/3	0.826	0.415	0.301	3.6e-31
ZFIN|ZDB-GENE-050112-1	226	psmd10 "proteasome (prosome, m	0.429	0.765	0.372	2.3e-21
UNIPROTKB|O75832	226	PSMD10 "26S proteasome non-ATP	0.426	0.761	0.368	1e-19
WB|WBGene00007756	715	C27A7.5 [Caenorhabditis elegan	0.473	0.267	0.348	1.6e-19
MGI|MGI:1858898	231	Psmd10 "proteasome (prosome, m	0.426	0.744	0.368	2.3e-19
ZFIN|ZDB-GENE-050522-247	1071	ankrd52a "ankyrin repeat domai	0.436	0.164	0.329	2.4e-19

TAIR|locus:2075442 SKOR "STELAR K+ outward rectifier" [Arabidopsis thaliana (taxid:3702)]

 Score = 1349 (479.9 bits), Expect = 2.3e-144, Sum P(2) = 2.3e-144
 Identities = 257/354 (72%), Positives = 299/354 (84%)

Query:    30 KISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXX 89
             KI+QTLY+PYIEKV LF+GCSSEFINQIVIRLHEEFFLPGEVIMEQG+V+DQLYF     
Sbjct:   388 KIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEFFLPGEVIMEQGSVVDQLYFVCHGV 447

Query:    90 XXXXXXXXXXXXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
                            + LQP+ SFGE+SILCNIPQPYTVR+ EL R+LR+DKQSF +ILE
Sbjct:   448 LEEIGITKDGSEEIVAVLQPDHSFGEISILCNIPQPYTVRVAELCRILRLDKQSFMNILE 507

Query:   150 IYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGL 209
             I+F DGR++L NLLEGKESN+R+KQ+ESDITFHI K EAELAL+ NSAA++GDLYQLK L
Sbjct:   508 IFFHDGRRILNNLLEGKESNVRIKQLESDITFHISKQEAELALKLNSAAFYGDLYQLKSL 567

Query:   210 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 269
             IRAG D NKTDYDGRSPLHLA SRGYEDITL+LIQ+ VD+NIKDK G+TPLLEAIK G+D
Sbjct:   568 IRAGGDPNKTDYDGRSPLHLAASRGYEDITLYLIQESVDVNIKDKLGSTPLLEAIKNGND 627

Query:   270 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 329
              V +LLVKEGA+LN+++AG+FLC  VA+GDSD LKR+LSNG+DPNS+DYDHRTPLHVAAS
Sbjct:   628 RVAALLVKEGATLNIENAGTFLCTVVAKGDSDFLKRLLSNGIDPNSKDYDHRTPLHVAAS 687

Query:   330 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF 383
             EG Y++A  L+EA A+V  KDRWGNTPLDE   CGNK LIKLLEDAK +Q+S F
Sbjct:   688 EGFYVLAIQLVEASANVLAKDRWGNTPLDEALGCGNKMLIKLLEDAKNSQISSF 741

GO:0005216 "ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA;IMP;IDA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010200 "response to chitin" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0005242 "inward rectifier potassium channel activity" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0015271 "outward rectifier potassium channel activity" evidence=IDA

TAIR|locus:2169866 GORK "gated outwardly-rectifying K+ channel" [Arabidopsis thaliana (taxid:3702)]

 Score = 1303 (463.7 bits), Expect = 1.0e-139, Sum P(2) = 1.0e-139
 Identities = 244/352 (69%), Positives = 291/352 (82%)

Query:    30 KISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXX 89
             KI+Q LY+PYI+KV LFKGCS+EFINQIVIRLHEE+FLPGEVI EQGNV+D LYF     
Sbjct:   371 KIAQLLYLPYIKKVPLFKGCSTEFINQIVIRLHEEYFLPGEVITEQGNVVDHLYFVCEGL 430

Query:    90 XXXXXXXXXXXXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
                            + L P++SFG++SI+CNI QP+TVR+CEL  LLR+DKQSF++ILE
Sbjct:   431 LEALVTKTDGSEESVTLLGPHTSFGDISIICNISQPFTVRVCELCHLLRLDKQSFSNILE 490

Query:   150 IYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGL 209
             IYF DGR +L N++E KESN R+K++ESDI  HIGK EAELAL+ NSAA+ GD YQLK L
Sbjct:   491 IYFHDGRTILNNIMEEKESNDRIKKLESDIVIHIGKQEAELALKVNSAAFQGDFYQLKSL 550

Query:   210 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 269
             IR+GAD NKTDYDGRSPLHLA  RGYEDITLFLIQ+GVD+N+KDKFG+TPL EA+K G +
Sbjct:   551 IRSGADPNKTDYDGRSPLHLAACRGYEDITLFLIQEGVDVNLKDKFGHTPLFEAVKAGQE 610

Query:   270 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 329
             GV  LLVKEGAS N++D+G+FLC  VA+GDSD LKR+LS+G++PNS DYDHRTPLHVAAS
Sbjct:   611 GVIGLLVKEGASFNLEDSGNFLCTTVAKGDSDFLKRLLSSGMNPNSEDYDHRTPLHVAAS 670

Query:   330 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS 381
             EGL+LMAK+L+EAGASV +KDRWGN+PLDE R+CGNK LIKLLED K  Q S
Sbjct:   671 EGLFLMAKMLVEAGASVISKDRWGNSPLDEARLCGNKKLIKLLEDVKNAQSS 722

GO:0005216 "ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=IMP;IDA

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2043839 KT1 "AT2G26650" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.2e-38, P = 1.2e-38
 Identities = 106/346 (30%), Positives = 175/346 (50%)

Query:    31 ISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXX 90
             IS  L+   ++KV LF+G S++ + Q+V  +  E+F P E ++ Q       Y       
Sbjct:   358 ISHFLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVNGTA 417

Query:    91 XXXXXXXXXXXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEI 150
                            +++     GE+ +LC  PQ +TVR   L +LLR+++ +F +I++ 
Sbjct:   418 DLVDVDTGTESIVR-EVKAGDIIGEIGVLCYRPQLFTVRTKRLCQLLRMNRTTFLNIIQA 476

Query:   151 YFCDGRKVLTNLLEG-KESNLR-LKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKG 208
                DG  ++ NLL+  KE N   +  V  +I   + + + +L L    AA   D   L  
Sbjct:   477 NVGDGTIIMNNLLQHLKEMNDPVMTNVLLEIENMLARGKMDLPLNLCFAAIREDDLLLHQ 536

Query:   209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
             L++ G D N++D +GR+PLH+A S+G  +  L L++   D N +D  G+ PL EA+  GH
Sbjct:   537 LLKRGLDPNESDNNGRTPLHIAASKGTLNCVLLLLEYHADPNCRDAEGSVPLWEAMVEGH 596

Query:   269 DGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 328
             + V  +L++ G++++  D G F C A  +G+  LLK ++ +G D         + LH A 
Sbjct:   597 EKVVKVLLEHGSTIDAGDVGHFACTAAEQGNLKLLKEIVLHGGDVTRPRATGTSALHTAV 656

Query:   329 SEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 374
              E    M K LLE GA V  +D  G TP D     G++++  L  +
Sbjct:   657 CEENIEMVKYLLEQGADVNKQDMHGWTPRDLAEQQGHEDIKALFRE 702

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=TAS

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IMP

GO:0006813 "potassium ion transport" evidence=IC;IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0090333 "regulation of stomatal closure" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0010107 "potassium ion import" evidence=IDA

TAIR|locus:2127866 KT5 "K+ transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 108/329 (32%), Positives = 175/329 (53%)

Query:    31 ISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXX 90
             IS  L+   ++K  LF G S++ + Q+V  +  E+F P E ++ +       Y       
Sbjct:   382 ISHYLFYEVVDKTYLFHGISNDLLFQLVSEMKAEYFPPKEDVILRNEAPSDFYIMVTGAV 441

Query:    91 XXXXXXXXXXXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEI 150
                            + Q    FGEV +LC  PQ +TVR   LS+LLR+++ +F ++++ 
Sbjct:   442 DIIARVNGVDQVV-GEAQTGHVFGEVGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNLVQA 500

Query:   151 YFCDGRKVLTNLLEG-KES-NLRLKQV--ESDITFHIGKHEAELALRFNSAAYHGDLYQL 206
                DG  ++ NLL+  K+S +  +K +  E+++    GK +  L+L F  AA  GD   L
Sbjct:   501 NVGDGAIIMNNLLQHLKDSTDPVMKGILAETELMLAQGKMDLPLSLCF--AAARGDDLLL 558

Query:   207 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC 266
               L++ G++ N+TD +GR+ LH+A S+G +   + L++ G D NI+D  G+ PL EAI  
Sbjct:   559 HQLLKRGSNPNETDKNGRTALHIAASKGSQYCVVLLLEHGADPNIRDSEGSVPLWEAIIG 618

Query:   267 GHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHV 326
              H+    LL + GA+L+ D  G F C+AV + + + LK ++  G D +  D +  T LH 
Sbjct:   619 RHEENAKLLSENGATLSFDTVGYFSCLAVGQNNLNALKDIVKYGGDISLSDVNGTTALHR 678

Query:   327 AASEGLYLMAKLLLEAGASVFTKDRWGNT 355
             A SEG   + + LLE GA +   D +G T
Sbjct:   679 AVSEGNLEIVQFLLEKGADMDKPDVYGWT 707

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2132065 KT2/3 "potassium transport 2/3" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.6e-31, P = 3.6e-31
 Identities = 102/338 (30%), Positives = 162/338 (47%)

Query:    29 RKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXX 88
             + I Q L++P +EKV LFKG S E +  +V ++  E+  P E ++ Q    D +Y     
Sbjct:   378 KSICQHLFLPSVEKVYLFKGVSREILLLLVSKMKAEYIPPREDVIMQNEAPDDVYIIVSG 437

Query:    89 XXXXXXXXXXXXXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSIL 148
                             + L+    FGEV  LC  PQ YT +   LS+LLR+        +
Sbjct:   438 EVEIIDSEMERESVLGT-LRCGDIFGEVGALCCRPQSYTFQTKSLSQLLRLKTSFLIETM 496

Query:   149 EIYFCDGRKVLTNLLEG--KESNLRLKQVESDITF-HIGKHEAELALRFNSAAYHGDLYQ 205
             +I   D   +L N L+   K SNL +  +++     +       +A    +    G+   
Sbjct:   497 QIKQQDNATMLKNFLQHHKKLSNLDIGDLKAQQNGENTDVVPPNIASNLIAVVTTGNAAL 556

Query:   206 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 265
             L  L++A    + TD  G++PLH+A SRGYED  L L++ G +I+I+D  GN+ L EAI 
Sbjct:   557 LDELLKAKLSPDITDSKGKTPLHVAASRGYEDCVLVLLKHGCNIHIRDVNGNSALWEAII 616

Query:   266 CGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLH 325
               H  +  +L    A  +   AG  LC A  + + +++K +L  G++ ++ D+   T L 
Sbjct:   617 SKHYEIFRILYHFAAISDPHIAGDLLCEAAKQNNVEVMKALLKQGLNVDTEDHHGVTALQ 676

Query:   326 VAASEGLYLMAKLLLEAGASVFTKDRWGN-TPLDEGRM 362
             VA +E    M  LL   GA V   +     TPL++ R+
Sbjct:   677 VAMAEDQMDMVNLLATNGADVVCVNTHNEFTPLEKLRV 714

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042391 "regulation of membrane potential" evidence=IMP

GO:0042802 "identical protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

ZFIN|ZDB-GENE-050112-1 psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Danio rerio (taxid:7955)]

 Score = 251 (93.4 bits), Expect = 2.3e-21, P = 2.3e-21
 Identities = 67/180 (37%), Positives = 99/180 (55%)

Query:   198 AYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
             AY G   +LK  + +   L  KTD D R+ LH A S G+ +I  FL+  GV++++KD   
Sbjct:    14 AYGGKFEELKKCVLSDNSLAAKTDQDSRTALHWACSAGHVNIAQFLLDLGVEVDLKDDAC 73

Query:   257 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSF-LCIAVARGDSDLLKRVLSNGVDPN 314
              TPL  A   G + +   L+ +GA LN V+  G   L  A ++   ++ + +L NG DPN
Sbjct:    74 WTPLHIAASAGREEIVRSLISKGAQLNSVNQNGCTPLHYAASKNLYEIAQILLENGADPN 133

Query:   315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRMCGNKNLIK 370
             + D    TPLH A+++G Y + +LLL+  AS   +D  GNTPL    DE R    K L++
Sbjct:   134 ATDKLQSTPLHRASAKGNYRLIQLLLKESASTNIQDSEGNTPLHLACDEERAEAAKLLVE 193

GO:0000502 "proteasome complex" evidence=IEA

GO:0055088 "lipid homeostasis" evidence=IMP

UNIPROTKB|O75832 PSMD10 "26S proteasome non-ATPase regulatory subunit 10" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 1.0e-19, P = 1.0e-19
 Identities = 66/179 (36%), Positives = 96/179 (53%)

Query:   198 AYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
             AY G L +LK  I A   L  +TD D R+ LH A S G+ +I  FL+Q GV +N KD  G
Sbjct:    14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73

Query:   257 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSF-LCIAVARGDSDLLKRVLSNGVDPN 314
              +PL  A   G D +   L+ +GA +N V+  G   L  A ++   ++   +L  G +P+
Sbjct:    74 WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133

Query:   315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRMCGNKNLI 369
             ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL    DE R+   K L+
Sbjct:   134 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV 192

GO:0005515 "protein binding" evidence=IPI

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA;TAS

GO:0030307 "positive regulation of cell growth" evidence=IDA

GO:0070682 "proteasome regulatory particle assembly" evidence=IMP

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IDA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IMP

GO:0043409 "negative regulation of MAPK cascade" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IDA;IMP

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IDA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IMP

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IDA

GO:0000502 "proteasome complex" evidence=TAS

GO:0005838 "proteasome regulatory particle" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

WB|WBGene00007756 C27A7.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 257 (95.5 bits), Expect = 1.6e-19, P = 1.6e-19
 Identities = 68/195 (34%), Positives = 105/195 (53%)

Query:   194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
             F +AA   D+  LK L  AG + + TDY+ R+ LH+A S G+ +   +L++ G +++IKD
Sbjct:   519 FCNAAKTNDVEILKSLKAAGVNFSATDYNLRTALHVAASNGHLESVNYLLKIGTNVHIKD 578

Query:   254 KFGNTPLLEAIKC-GHDGVTSLLVKEG-ASLNVDDAGSFLCIAVARGDSDLLKRVLSNGV 311
              FG   L+ A+K    D + ++    G    +    G  LC+AV + D +LLK   + G 
Sbjct:   579 MFGYNALVCAVKAKAMDCIIAIRDAGGFIDASAQKIGVELCLAVYQNDMELLKCNEAAGT 638

Query:   312 DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 371
                 +DYD+RT LHVAAS     +   LL+ G +   KD +G TP+DE +    +NL+ +
Sbjct:   639 HMGEKDYDNRTALHVAASLNKPEIVAYLLQCGLNPHEKDDFGITPMDEAKRRNLQNLMDM 698

Query:   372 L-EDAKCTQLSE-FH 384
             + E    T   E FH
Sbjct:   699 MAEHQALTNNDEVFH 713

GO:0004067 "asparaginase activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

MGI|MGI:1858898 Psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Mus musculus (taxid:10090)]

 Score = 234 (87.4 bits), Expect = 2.3e-19, P = 2.3e-19
 Identities = 66/179 (36%), Positives = 96/179 (53%)

Query:   198 AYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
             AY G L +LK  I A   L  +TD D R+ LH A S G+ +I  FL+Q GV +N KD  G
Sbjct:    14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73

Query:   257 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSF-LCIAVARGDSDLLKRVLSNGVDPN 314
              +PL  A   G D +   L+ +GA +N V+  G   L  A ++   ++   +L  G +P+
Sbjct:    74 WSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133

Query:   315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRMCGNKNLI 369
             ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL    DE R+   K L+
Sbjct:   134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000502 "proteasome complex" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0030307 "positive regulation of cell growth" evidence=ISO

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0043409 "negative regulation of MAPK cascade" evidence=ISO

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=ISO

GO:0070682 "proteasome regulatory particle assembly" evidence=ISO

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO

ZFIN|ZDB-GENE-050522-247 ankrd52a "ankyrin repeat domain 52a" [Danio rerio (taxid:7955)]

 Score = 258 (95.9 bits), Expect = 2.4e-19, P = 2.4e-19
 Identities = 59/179 (32%), Positives = 101/179 (56%)

Query:   197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
             AAY G L  +K L+  G+D +  D  G +PLH A + G+ D+  +L++ G +I+  + FG
Sbjct:   180 AAYLGHLEVVKLLVSQGSDKSCKDKRGYTPLHAAAASGHVDVVKYLLRNGAEIDEPNAFG 239

Query:   257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI---AVARGDSDLLKRVLSNGVDP 313
             NT L  A   G + V + LV  GA++N  +   +  +   AV+   +  L+ +++NG D 
Sbjct:   240 NTALHVACYTGQEAVANELVNRGANVNQPNHRGYTPLHLAAVSTNGALCLELLVNNGADV 299

Query:   314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
             N +  + ++PLH+AA  G +  +++L++ G  +   DR+GNTPL      G++ LI  L
Sbjct:   300 NMQSKEGKSPLHMAAIHGRFTRSQILIQNGGEIDCVDRYGNTPLHVAAKYGHELLISTL 358

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M8S6	SKOR_ARATH	No assigned EC number	0.7683	0.8734	0.4251	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_II001048 hypothetical protein (841 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	403
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	3e-50
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-35
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-28
cd00038	115	cd00038, CAP_ED, effector domain of the CAP family	5e-26
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-18
smart00100	120	smart00100, cNMP, Cyclic nucleotide-monophosphate	1e-17
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-17
pfam00027	91	pfam00027, cNMP_binding, Cyclic nucleotide-binding	8e-17
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	9e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-16
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-16
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-15
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-14
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-14
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-14
COG0664	214	COG0664, Crp, cAMP-binding proteins - catabolite g	5e-14
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-13
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	8e-13
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-10
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	6e-10
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-09
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-09
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-09
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-09
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-09
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	8e-09
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	9e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-08
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	2e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	9e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	6e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	9e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-06
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	1e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-05
PHA02917	661	PHA02917, PHA02917, ankyrin-like protein; Provisio	9e-05
smart00248	30	smart00248, ANK, ankyrin repeats	1e-04
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	2e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	2e-04
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	4e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-04
TIGR03896	317	TIGR03896, cyc_nuc_ocin, bacteriocin-type transpor	7e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	8e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.001
PHA02716	764	PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provi	0.002
PRK09392	236	PRK09392, ftrB, transcriptional activator FtrB; Pr	0.002
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	0.003
smart00248	30	smart00248, ANK, ankyrin repeats	0.003
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	0.003

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score =  180 bits (459), Expect = 3e-50
 Identities = 104/322 (32%), Positives = 159/322 (49%), Gaps = 9/322 (2%)

Query: 29  RKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
           + I Q L++P +EKV LFKG S E +  +V ++  E+  P E ++ Q    D +Y V  G
Sbjct: 365 KSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSG 424

Query: 89  VLEEVGV-GEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSI 147
            +E +   GE   E  V  L     FGEV  LC  PQ +T R   LS+LLR+   +    
Sbjct: 425 EVEIIDSEGEK--ERVVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRLKTSTLIEA 482

Query: 148 LEIYFCDGRKVLTNLLEGKESNLRLKQVE-SDITFHIGKHEAELALRFN--SAAYHGDLY 204
           ++    D   +L N L+    +  L  +   D+    G    +  +  N  + A  G+  
Sbjct: 483 MQTRQEDNVVILKNFLQ---HHKELHDLNVGDLLGDNGGEHDDPNMASNLLTVASTGNAA 539

Query: 205 QLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 264
            L+ L++A  D +  D  GR+PLH+A S+GYED  L L++   +++I+D  GNT L  AI
Sbjct: 540 LLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAI 599

Query: 265 KCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPL 324
              H  +  +L    +  +   AG  LC A  R D   +K +L  G++ +S D+   T L
Sbjct: 600 SAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATAL 659

Query: 325 HVAASEGLYLMAKLLLEAGASV 346
            VA +E    M +LL+  GA V
Sbjct: 660 QVAMAEDHVDMVRLLIMNGADV 681

Length = 823

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  124 bits (314), Expect = 8e-35
 Identities = 57/156 (36%), Positives = 77/156 (49%), Gaps = 31/156 (19%)

Query: 217 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 276
           N  D DGR+PLHLA S G+ ++   L++ G D+N KD  G TPL  A K GH        
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGH-------- 52

Query: 277 KEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMA 336
                                   +++K +L  G D N+RD D  TPLH+AA  G   + 
Sbjct: 53  -----------------------LEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVV 89

Query: 337 KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           KLLL+ GA V  +D+ G TPL      G+  ++KLL
Sbjct: 90  KLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  107 bits (269), Expect = 2e-28
 Identities = 56/144 (38%), Positives = 76/144 (52%), Gaps = 31/144 (21%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA +G L  +K L+  GAD+N  D DGR+PLHLA   G+ +I   L++KG D+N +DK G
Sbjct: 14  AASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDG 73

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 316
           NTP                               L +A   G+ D++K +L +G D N+R
Sbjct: 74  NTP-------------------------------LHLAARNGNLDVVKLLLKHGADVNAR 102

Query: 317 DYDHRTPLHVAASEGLYLMAKLLL 340
           D D RTPLH+AA  G   + KLLL
Sbjct: 103 DKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

 Score =  100 bits (252), Expect = 5e-26
 Identities = 43/115 (37%), Positives = 61/115 (53%)

Query: 45  LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETV 104
           LF G   E + ++   L E  F  GEVI+ QG+  D LY V  G +E   + EDG E+ V
Sbjct: 1   LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60

Query: 105 SQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVL 159
             L P   FGE+++L N P+  TVR    S LL + +  F  +L+ Y    R++L
Sbjct: 61  GFLGPGDLFGELALLGNGPRSATVRALTDSELLVLPRSDFRRLLQEYPELARRLL 115

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 92.2 bits (228), Expect = 2e-21
 Identities = 70/234 (29%), Positives = 91/234 (38%), Gaps = 34/234 (14%)

Query: 143 SFTSILEIYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGD 202
           S +++L I  C    +L  LL     +L              K    L L    AA    
Sbjct: 4   SLSALLLINKCFLDLLLVALLLLLSLDLSNPS--------DKKLNLYLELALLPAASL-- 53

Query: 203 LYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE 262
             +L   +     L   D DGR PLH A S+G + I   L+  G D+N KD  G+TPL  
Sbjct: 54  -SELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHL 112

Query: 263 AIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRT 322
           A   G+                 +    L  A A  D              N RD D  T
Sbjct: 113 AALNGNP-----------PEGNIEVAKLLLEAGADLD------------VNNLRDEDGNT 149

Query: 323 PLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 376
           PLH AA  G   + +LLLEAGA   +++ +G T LD     G   L+KLL D  
Sbjct: 150 PLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 81.9 bits (203), Expect = 2e-19
 Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 2/90 (2%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA +G+L  +K L+  GAD+N  D D  + LHLA   G  +I   L++ G D+N KDK G
Sbjct: 4   AAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKDKDG 61

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDD 286
           NT L  A + G+  +  LL++ GA +N+ D
Sbjct: 62  NTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 78.8 bits (195), Expect = 3e-18
 Identities = 35/91 (38%), Positives = 55/91 (60%)

Query: 260 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYD 319
           L  A K G+  +  LL+++GA +N+ D  + L +A   G+ +++K +L +G D N++D D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60

Query: 320 HRTPLHVAASEGLYLMAKLLLEAGASVFTKD 350
             T LH+AA  G   + KLLLE GA +  KD
Sbjct: 61  GNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain

 Score = 78.2 bits (193), Expect = 1e-17
 Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 2/107 (1%)

Query: 45  LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETV 104
           LFK   +E + ++   L    +  GEVI+ QG+V D  Y +  G +E   V EDG E+ V
Sbjct: 1   LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIIVSGEVEVYKVLEDGEEQIV 60

Query: 105 SQLQPNSSFGEVSILCNIPQPY--TVRICELSRLLRIDKQSFTSILE 149
             L P   FGE+++L N  +         EL+ LLRID + F  +L 
Sbjct: 61  GTLGPGDFFGELALLTNSRRAASAAAVALELATLLRIDFRDFLQLLP 107

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases. Length = 120

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 82.4 bits (204), Expect = 4e-17
 Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 41/207 (19%)

Query: 176 ESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG- 234
           E +    I   EA L   +   A +  + +++ L+ AGAD+N     G++PLHL      
Sbjct: 3   EDESVDII--MEAAL-YDYLLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSS 59

Query: 235 --YEDITLFLIQKGVDINIKDKFGNTPL---------LEAIKCGHDGVTSLLVKEGASLN 283
              +DI   L++ G D+N  ++ G TPL         L+ IK        LL+K GA +N
Sbjct: 60  EKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIK--------LLIKAGADVN 111

Query: 284 VDDAGSF----LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYL----- 334
             D        + ++    +  +++ +L  G D N+ D    TPL V       L     
Sbjct: 112 AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAV------LLKSRNA 165

Query: 335 ---MAKLLLEAGASVFTKDRWGNTPLD 358
              + +LL++AGA V+  D    + L 
Sbjct: 166 NVELLRLLIDAGADVYAVDDRFRSLLH 192

Length = 471

>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain

 Score = 74.6 bits (184), Expect = 8e-17
 Identities = 31/89 (34%), Positives = 46/89 (51%)

Query: 63  EEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNI 122
              F  GEVI  +G+  D LY V  G ++   + EDG E+ ++ L P   FGE+++L   
Sbjct: 1   LRSFKKGEVIFREGDPADSLYIVLSGKVKVYKLDEDGREQILAFLGPGDFFGELALLGGE 60

Query: 123 PQPYTVRICELSRLLRIDKQSFTSILEIY 151
           P+  TV     S LL I ++ F  +LE  
Sbjct: 61  PRSATVVALTDSELLVIPREDFLELLEQD 89

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 81.6 bits (202), Expect = 9e-17
 Identities = 54/182 (29%), Positives = 79/182 (43%), Gaps = 20/182 (10%)

Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGY-EDITLFLIQKGVDINIKDKFGNTPL---LEAI 264
           L+ AGAD+N  +  G +PLHL        D+   LI+ G D+N KDK G TPL   L + 
Sbjct: 69  LLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYL-SG 127

Query: 265 KCGHDGVTSLLVKEGASLNVDDAGSFLCIAV----ARGDSDLLKRVLSNGVDPNSRDYDH 320
              +  V  LL+++GA +N  D      +AV       + +LL+ ++  G D  + D   
Sbjct: 128 FNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRF 187

Query: 321 RTPLHVAASEGLYLMA-----KLLLEAGASVFTKDRWGNTPLDEGRM---CGNKNLIKLL 372
           R+ LH                + L+ AG      D  GNTPL        C    ++ LL
Sbjct: 188 RSLLHHHL---QSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLL 244

Query: 373 ED 374
             
Sbjct: 245 IA 246

Length = 471

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 73.1 bits (180), Expect = 3e-16
 Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 291 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 350
           L +A   G+ +L+K +L  G D N  D D  T LH+AA  G   + KLLLE GA V  KD
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 351 RWGNTPLDEGRMCGNKNLIKLL 372
           + GNT L      GN  ++KLL
Sbjct: 59  KDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 78.5 bits (194), Expect = 7e-16
 Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 14/164 (8%)

Query: 206 LKGLIRAGADLNKTDYDGRSPLH--LATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA 263
           +K LI+AGAD+N  D  GR+PLH  L+       +   L++KG D+N  D +G TPL   
Sbjct: 100 IKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVL 159

Query: 264 IKCGH--DGVTSLLVKEGASL-NVDDAG-----SFLCIAVARGDSDLLKRVLSNGVDPNS 315
           +K  +    +  LL+  GA +  VDD         L     +  + +++ ++  G DP +
Sbjct: 160 LKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHL--QSFKPRARIVRELIRAGCDPAA 217

Query: 316 RDYDHRTPLHVAASEGLYLMAKL--LLEAGASVFTKDRWGNTPL 357
            D    TPLH  A+      + +  LL AG S+  ++R+G TPL
Sbjct: 218 TDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPL 261

Length = 471

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 78.4 bits (193), Expect = 1e-15
 Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 7/157 (4%)

Query: 206 LKGLIRAGADLNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 264
            K L+  GAD+N  D   G + LH AT    + +T  L+  G ++NI DK  N+PL  A+
Sbjct: 150 TKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAV 209

Query: 265 KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVAR-GDSDLLKRVLSNGVDPNSRDY-DH 320
           K  +  +  +L++ GAS +  D    + L I+V    D D+LK +L +GVD N++ Y   
Sbjct: 210 KHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILG 269

Query: 321 RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 357
            T LH +      L  KLLLE GA + + + +  TPL
Sbjct: 270 LTALHSSIKSERKL--KLLLEYGADINSLNSYKLTPL 304

Length = 477

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 74.6 bits (183), Expect = 1e-14
 Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 21/243 (8%)

Query: 121 NIPQPY----TVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEGKESNLRLKQVE 176
            IP P      +   ++ +LL ID    TSIL I   +   + T L  G + N++     
Sbjct: 67  KIPHPLLTAIKIGAHDIIKLL-IDNGVDTSILPIPCIEKDMIKTILDCGIDVNIK----- 120

Query: 177 SDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYE 236
                     +AEL    + A   GDL  +K L   GAD+N  D +G  P+H+A    + 
Sbjct: 121 ----------DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFF 170

Query: 237 DITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVA 296
           DI   L++KG   N+KD  G +PL  A + G      LL+  G  +       F  +  A
Sbjct: 171 DIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNA 230

Query: 297 RGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYL-MAKLLLEAGASVFTKDRWGNT 355
              +     +L N    N +D D  TPLH A +    + +  +LL   A +  KD  G  
Sbjct: 231 IIHNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGEN 290

Query: 356 PLD 358
           P+D
Sbjct: 291 PID 293

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 74.6 bits (183), Expect = 1e-14
 Identities = 56/176 (31%), Positives = 79/176 (44%), Gaps = 12/176 (6%)

Query: 201 GDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 260
           GD   ++  I+ GAD+N  +     PL  A   G  DI   LI  GVD +I         
Sbjct: 46  GDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSIL-------- 97

Query: 261 LEAIKCGHDGVTSLLVKEGASLNVDDAGS--FLCIAVARGDSDLLKRVLSNGVDPNSRDY 318
              I C    +   ++  G  +N+ DA    FL  A+ +GD + +K +   G D N  D 
Sbjct: 98  --PIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD 155

Query: 319 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 374
           +   P+H+A     + + KLLLE GA    KD  G +PL      G+   IKLL D
Sbjct: 156 NGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLID 211

Length = 434

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 74.9 bits (184), Expect = 1e-14
 Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 291 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 350
           LC   A GD+   + +L+ G DPN RDYD RTPLH+A + G   + ++LLE GA     D
Sbjct: 86  LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD 145

Query: 351 RWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCS--QGMIGIAENLLLLPL 402
           + G TPL+     G + +++LL         E    +      G   +L   P+
Sbjct: 146 KDGKTPLELAEENGFREVVQLLS-RHSQCHFELGANAKPDSFTGKPPSLEDSPI 198

Length = 664

>gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

 Score = 70.2 bits (172), Expect = 5e-14
 Identities = 29/126 (23%), Positives = 53/126 (42%)

Query: 39  YIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGED 98
            +++  L     SE +  + ++L       GEV+  +G   D LY +  G+++     ED
Sbjct: 1   ALKENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTED 60

Query: 99  GSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKV 158
           G E  +  L P   FGE+++L   P+  +        +L I ++ F  +L         +
Sbjct: 61  GREIILGFLGPGDFFGELALLGGDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALAL 120

Query: 159 LTNLLE 164
           L  L  
Sbjct: 121 LRLLAR 126

Length = 214

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 70.3 bits (172), Expect = 4e-13
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 4/145 (2%)

Query: 185 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ 244
           +H+   AL + +      L +L  L+  GA++N  D    SPLH A     + I   L++
Sbjct: 165 RHKGNTALHYATENKDQRLTEL--LLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLE 222

Query: 245 KGVDINIKDKFGNTPLLEAI-KCGHDGVTSLLVKEGASLNVDDA-GSFLCIAVARGDSDL 302
            G   + +DK GNTPL  ++  C    +  LL++ G  +N          +  +      
Sbjct: 223 NGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERK 282

Query: 303 LKRVLSNGVDPNSRDYDHRTPLHVA 327
           LK +L  G D NS +    TPL  A
Sbjct: 283 LKLLLEYGADINSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 69.3 bits (170), Expect = 8e-13
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 19/168 (11%)

Query: 209 LIRAGADLNKTDYDGRSPLHLA--TSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC 266
           L+  GA++N  D +G +PL  A         I  +L+  G ++NIK+  G   L   ++ 
Sbjct: 92  LLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLES 151

Query: 267 GHD--GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPL 324
                 +  LL+ +G  +N  +                +  +LS GV  N +D    TPL
Sbjct: 152 NKIDLKILKLLIDKGVDINAKNR---------------VNYLLSYGVPINIKDVYGFTPL 196

Query: 325 HVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           H A         K LL+ GA+    +++G+TPL    +  NK + KLL
Sbjct: 197 HYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLL 244

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 8/162 (4%)

Query: 206 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITL--FLIQKGVDINIKDKFGNTPL--- 260
           ++ L+R GAD+N  D  G +PL +       ++ L   LI  G D+   D    + L   
Sbjct: 135 IRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHH 194

Query: 261 LEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSD---LLKRVLSNGVDPNSRD 317
           L++ K     V  L+         D  G+    ++A G S    L+  +L  G+  N+R+
Sbjct: 195 LQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARN 254

Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 359
              +TPLH AA        + L+  GA +      GNTPL  
Sbjct: 255 RYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSL 296

Length = 471

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 60.2 bits (146), Expect = 6e-10
 Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 195 NSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGY---EDITLFLIQKGVDINI 251
           N   Y   L  +K LI  GAD+NK + DG +PL+   S GY    +I LF+I+ G D  +
Sbjct: 81  NIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTL 140

Query: 252 KDKFGNTPLLEAIKCGHD---GVTSLLVKEGASLNV-------DDAGSFLCIAVARGDSD 301
            DK G T L   ++  H     +  LL+++G  +N        D    +    + R D+D
Sbjct: 141 LDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDAD 200

Query: 302 LLKRVLSNGVDPNSRDYDHRTPL 324
           +LK  + NG   N  +  H+   
Sbjct: 201 ILKLFVDNGFIINKENKSHKKKF 223

Length = 489

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 33/86 (38%), Positives = 45/86 (52%)

Query: 190 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 249
           L +     A  GD    + L+  GAD N  DYDGR+PLH+A + G+  +   L++ G D 
Sbjct: 82  LTVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP 141

Query: 250 NIKDKFGNTPLLEAIKCGHDGVTSLL 275
            + DK G TPL  A + G   V  LL
Sbjct: 142 TLLDKDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 59.7 bits (144), Expect = 1e-09
 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 14/176 (7%)

Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGY--EDITLFLIQKGVDINIKDKFGNTPLLEA--I 264
           L+  GAD+N  +  G +PL+L    GY  E+I   LI  G D+N  D+   TPL +A  +
Sbjct: 293 LLERGADVNAKNIKGETPLYLMAKNGYDTENIRT-LIMLGADVNAADRLYITPLHQASTL 351

Query: 265 KCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVDPNSRDYDHRT 322
               D V +LL + GA++N  D      I  A  R +  ++  +L  G D  +      T
Sbjct: 352 DRNKDIVITLL-ELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGT 410

Query: 323 PLHVA-ASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK---NLIKLLED 374
            LH A      Y+  K L++ GA+V +K++  +TPL     C      ++I++L D
Sbjct: 411 ALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYA--CKKNCKLDVIEMLLD 464

Length = 682

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 59.2 bits (143), Expect = 1e-09
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 10/155 (6%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDY-DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 255
           A   GD+  ++ L+  G   +   Y DG +PLHLAT     DI   LI +G D +I +  
Sbjct: 75  AVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTD 134

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 313
             +PL  A+  G      LL+   A L+++D      L IA+A+GD  + K +L +G + 
Sbjct: 135 KFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANI 194

Query: 314 NSRDYDHRTP----LHVAASEGLYLMAKLLLEAGA 344
           +   Y  +      L  A       + +L ++ GA
Sbjct: 195 D---YFGKNGCVAALCYAIENNKIDIVRLFIKRGA 226

Length = 413

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 56.4 bits (135), Expect = 3e-09
 Identities = 37/142 (26%), Positives = 55/142 (38%), Gaps = 20/142 (14%)

Query: 189 ELALRFNSAAYHGDLYQLKGLIRAGA---DLNKTDYDGRSPLHLATSRGYEDITLFLIQK 245
            LA    +    G++   K L+ AGA     N  D DG +PLH A   G  DI   L++ 
Sbjct: 111 HLAALNGNP-PEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA 169

Query: 246 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKR 305
           G D N ++ +G T L  A K G   +  LL+ +G  L                       
Sbjct: 170 GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHL----------------SLLKFNL 213

Query: 306 VLSNGVDPNSRDYDHRTPLHVA 327
                 + + R+  + T L +A
Sbjct: 214 EGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 206 LKGLIRAGADLNKTDYDGRSPLH-LAT-SRGYEDITLFLIQKGVDINIKDKFGNTPLLEA 263
           ++ LIRAG D   TD  G +PLH +AT S     + L L+  G+ IN ++++G TPL  A
Sbjct: 205 VRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYA 264

Query: 264 IKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLS 308
               +      L+  GA +N   +     +   V   +   ++  L+
Sbjct: 265 AVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALA 311

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 23/76 (30%), Positives = 38/76 (50%)

Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
           L+  G  +N  D  G +PLH A      +   +L+  G + N+ +K+G+TPL  AI   +
Sbjct: 178 LLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNN 237

Query: 269 DGVTSLLVKEGASLNV 284
             +  LL+  G S+  
Sbjct: 238 KEIFKLLLNNGPSIKT 253

Length = 422

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 58.0 bits (140), Expect = 4e-09
 Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 37/203 (18%)

Query: 206 LKGLIRAGADLNKTDYDGRSPLHLATSR------------------GYEDITL------- 240
           +K L+  G ++N+ D+   +PLH+                       Y  + +       
Sbjct: 53  VKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNR 112

Query: 241 -FLIQKGVDINIKDKFGNTPLLEAIKCGHDG-----VTSLLVKEGASLNVDD---AGSFL 291
              I K +  N         L+   K   D      +T LL+  GA +N+ D     + L
Sbjct: 113 NVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTAL 172

Query: 292 CIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR 351
             A    D  L + +LS G + N  D  + +PLH A       +  +LLE GAS   +D+
Sbjct: 173 HYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDK 232

Query: 352 WGNTPL--DEGRMCGNKNLIKLL 372
            GNTPL    G  C + +++KLL
Sbjct: 233 CGNTPLHISVGY-CKDYDILKLL 254

Length = 477

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 55.6 bits (133), Expect = 6e-09
 Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 9/147 (6%)

Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-LCIAVARGDSDLLKRV 306
           + + K       L          +   L+ +      D  G   L  A ++GD  ++K +
Sbjct: 33  NPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLL 92

Query: 307 LSNGVDPNSRDYDHRTPLHVAA-----SEGLYLMAKLLLEAGAS---VFTKDRWGNTPLD 358
           L++G D N++D D  TPLH+AA      EG   +AKLLLEAGA       +D  GNTPL 
Sbjct: 93  LASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLH 152

Query: 359 EGRMCGNKNLIKLLEDAKCTQLSEFHY 385
              + G+ ++++LL +A     S   Y
Sbjct: 153 WAALNGDADIVELLLEAGADPNSRNSY 179

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 56.9 bits (137), Expect = 8e-09
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 3/112 (2%)

Query: 206 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 265
           +K LI  GAD +  + D  SPLHLA   G       LI     ++I+D  G TPL+ A+ 
Sbjct: 118 MKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMA 177

Query: 266 CGHDGVTSLLVKEGASLN-VDDAG--SFLCIAVARGDSDLLKRVLSNGVDPN 314
            G   +  +L+  GA+++     G  + LC A+     D+++  +  G D N
Sbjct: 178 KGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCN 229

Length = 413

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 56.5 bits (136), Expect = 9e-09
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 5/179 (2%)

Query: 201 GDLYQLKGLIRAGADLNKTDYDGRSPLHLATS-RGYEDITLFLIQKGVDINIKDKFGNTP 259
           G+L   + L+  G + N   YDG SP+ LA   R  E I L L++ G   ++K     + 
Sbjct: 13  GELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKL-LMKHGAIPDVKYPDIESE 71

Query: 260 LLEAIKCGHDGVTSLLVKEGASLN---VDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 316
           L +A++ G       L+  G   +     D  + L +A      D++K +++ G DP+  
Sbjct: 72  LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP 131

Query: 317 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 375
           + D  +PLH+A   G     +LL++  A +  +D  G TPL      G+  + K+L D+
Sbjct: 132 NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS 190

Length = 413

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 46/197 (23%), Positives = 76/197 (38%), Gaps = 27/197 (13%)

Query: 203 LYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL-- 260
           +  +K +I      + +      PL+LA      D+   L+  G DIN   K  +TPL  
Sbjct: 15  VKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHY 74

Query: 261 --LEAIKCGHD-GVTSLLVKEGASLNV-DDAGS---FLCIAVARGDSDLLKRVLSNGVDP 313
                        +  LL++ GA++N  D+ G       I+       +++ +L NG + 
Sbjct: 75  LSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV 134

Query: 314 NSRDYDHRTPLHVAAS--------------EGLYLMAK----LLLEAGASVFTKDRWGNT 355
           N ++ D    LH+                 +G+ + AK     LL  G  +  KD +G T
Sbjct: 135 NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFT 194

Query: 356 PLDEGRMCGNKNLIKLL 372
           PL       N   +K L
Sbjct: 195 PLHYAVYNNNPEFVKYL 211

Length = 422

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 57.0 bits (137), Expect = 1e-08
 Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 7/152 (4%)

Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
           L+  GAD+N  D    +P+H A  RG   +   L+  G D+NI      + L  A+   +
Sbjct: 164 LLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKN 223

Query: 269 DGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL--SNGVDPNSRDYDHRTPLHV 326
                 ++   +++N +D    L +  A  + DL   +L    G   NS D    TPLH 
Sbjct: 224 IDTIKAIIDNRSNINKND----LSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHH 279

Query: 327 AA-SEGLYLMAKLLLEAGASVFTKDRWGNTPL 357
           A+ +  L  +   LLE GA V  K+  G TPL
Sbjct: 280 ASQAPSLSRLVPKLLERGADVNAKNIKGETPL 311

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 56.6 bits (136), Expect = 1e-08
 Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 5/150 (3%)

Query: 202 DLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPL 260
           D   ++ LI  GAD+N  D    +PLH A++    +DI + L++ G ++N +D    TP+
Sbjct: 320 DTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPI 379

Query: 261 LEAIKCGHDGVTSLLVKEGASLNV--DDAGSFLCIAVARGDSDL-LKRVLSNGVDPNSRD 317
             A    +  + + L+  GA +       G+ L  A+   +  + +K ++  G + NS++
Sbjct: 380 HYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKN 439

Query: 318 YDHRTPLHVAASEGLYL-MAKLLLEAGASV 346
            D  TPLH A  +   L + ++LL+ GA V
Sbjct: 440 KDLSTPLHYACKKNCKLDVIEMLLDNGADV 469

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 209 LIRAGADLNKTDYDGRSPLHLAT-SRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 267
           L  AG  +N  D    +PLH A+ +     +   L+++G D+N K+  G TPL    K G
Sbjct: 259 LYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNG 318

Query: 268 HDGVT-SLLVKEGASLNVDDAGSFLCIAVARG---DSDLLKRVLSNGVDPNSRDYDHRTP 323
           +D      L+  GA +N  D      +  A     + D++  +L  G + N+RDY  +TP
Sbjct: 319 YDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTP 378

Query: 324 LHVAASEGLYLMAKLLLEAGASV 346
           +H AA     ++   LL+ GA +
Sbjct: 379 IHYAAVRNNVVIINTLLDYGADI 401

Length = 682

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 12/158 (7%)

Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
           L+  G   N+TD DG  PLH+A+      I   L+  G D N  DK   TPL        
Sbjct: 58  LLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDD 117

Query: 269 DGV--TSLLVKEGASLN--VDDAGSFLCIAVARGDSDLLKRVLSNG-----VDPNSRDYD 319
           + +   +LLV+ GA +N  VD+ G    +A       + K+++S G     VD   +++ 
Sbjct: 118 EVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHI 177

Query: 320 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 357
           HR   H+ +          +++ G S    D  GNTPL
Sbjct: 178 HR---HLMSDNPKASTISWMMKLGISPSKPDHDGNTPL 212

Length = 446

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 23/54 (42%), Positives = 33/54 (61%)

Query: 223 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 276
           GR+ LH A   G  ++  +L++KGVDIN  D+ GNT L  A + G+  V  LL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.0 bits (115), Expect = 9e-08
 Identities = 22/52 (42%), Positives = 28/52 (53%)

Query: 289 SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL 340
           + L  A   G  +L+K +L  GVD N  D D  T LH+AA  G   + KLLL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 222 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 254
           DG +PLHLA   G+ ++   L++ G D+N +DK
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 209 LIRAG-ADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 260
           L+  G  DLN TD +G +PLHLA   G  ++  +L++ GVD+N++D  G T L
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTAL 53

Length = 56

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 25/153 (16%)

Query: 245 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN--------------------- 283
           KG  INI      TPL++AI+ G   +  L +K GA +N                     
Sbjct: 24  KGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDI 83

Query: 284 ----VDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 339
               +D+      + +   + D++K +L  G+D N +D + +T LH A  +G     K+L
Sbjct: 84  IKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKML 143

Query: 340 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
            E GA V  +D  G  P+         ++IKLL
Sbjct: 144 FEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLL 176

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI 243
           AA  G L  +K L+  G D+N+TD DG + LH+A   G  ++   L+
Sbjct: 8   AAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.8 bits (112), Expect = 3e-07
 Identities = 22/53 (41%), Positives = 26/53 (49%)

Query: 320 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
            RT LH AA  G   + K LLE G  +   D  GNT L      GN  ++KLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 51.2 bits (122), Expect = 6e-07
 Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 6/122 (4%)

Query: 238 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD--DAGSFLCIAV 295
           I   L++ G D+N KD +  TP+  A + G+  + +LL+  GA +N+   D  S L  AV
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAV 219

Query: 296 ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 355
              + D +K ++ N  + N  D    + L    +E L   + LL +AG SV + D   NT
Sbjct: 220 DSKNIDTIKAIIDNRSNINKNDL---SLLKAIRNEDLE-TSLLLYDAGFSVNSIDDCKNT 275

Query: 356 PL 357
           PL
Sbjct: 276 PL 277

Length = 682

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 50.4 bits (120), Expect = 9e-07
 Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 9/172 (5%)

Query: 178 DITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYED 237
           +   + G    +LA++F       D   +K L++ GA  +    D  S LH A   G   
Sbjct: 29  NFEIYDGISPIKLAMKFR------DSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK 82

Query: 238 ITLFLIQKGVDIN-IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD--DAGSFLCIA 294
               L+  G   + +  K G TPL  A       +  LL+  GA  ++   D  S L +A
Sbjct: 83  AVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLA 142

Query: 295 VARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 346
           V  GD   ++ ++ +    +  D    TPL +A ++G   + K+LL++GA++
Sbjct: 143 VMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANI 194

Length = 413

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 8/171 (4%)

Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG- 288
           A   G  DI   L+  G++ N +   G +P+  A+K        LL+K GA  +V     
Sbjct: 9   AILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDI 68

Query: 289 -SFLCIAVARGDSDLLKRVLSNGVDPNSRDY-DHRTPLHVAASEGLYLMAKLLLEAGA-- 344
            S L  AV  GD   ++ +L  G   +   Y D  TPLH+A       + KLL+  GA  
Sbjct: 69  ESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP 128

Query: 345 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK-CTQLSEFHYCSQGMIGIA 394
            +   D++  +PL    M G+   I+LL D K C  + +   C+  +I +A
Sbjct: 129 DIPNTDKF--SPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMA 177

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 307 LSNG-VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 358
           L +G +D N+ D +  TPLH+AA  G   + + LL+ G  +  +D  G T LD
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 279 GASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKL 338
           G   + + A + L +A + G++ LL+ +L   +DP+  D   RTPLH+AAS+G      +
Sbjct: 518 GEHDDPNMASNLLTVA-STGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLV 576

Query: 339 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           LL+   +V  +D  GNT L       +  + ++L
Sbjct: 577 LLKHACNVHIRDANGNTALWNAISAKHHKIFRIL 610

Length = 823

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 48.5 bits (115), Expect = 4e-06
 Identities = 60/184 (32%), Positives = 86/184 (46%), Gaps = 12/184 (6%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA  G+   +  L+  GAD+N    D  S L  A      D    +I    +IN  D   
Sbjct: 185 AAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKND--- 241

Query: 257 NTPLLEAIKCGHDGVTSLLVKE-GASLN-VDD-AGSFLCIAV-ARGDSDLLKRVLSNGVD 312
              LL+AI+   D  TSLL+ + G S+N +DD   + L  A  A   S L+ ++L  G D
Sbjct: 242 -LSLLKAIR-NEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGAD 299

Query: 313 PNSRDYDHRTPLHVAASEGLYLM-AKLLLEAGASVFTKDRWGNTPLDEGRMCG-NKN-LI 369
            N+++    TPL++ A  G      + L+  GA V   DR   TPL +      NK+ +I
Sbjct: 300 VNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVI 359

Query: 370 KLLE 373
            LLE
Sbjct: 360 TLLE 363

Length = 682

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.5 bits (101), Expect = 5e-06
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 319 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR 351
           D  TPLH+AA  G   + KLLLEAGA V  +D+
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 13/122 (10%)

Query: 206 LKGLIRAGADLNKTDYDGRSPLH--LATSRGYE---DITLFLIQKGVDINIKDKFGNTPL 260
           +K  I  GA++N  D +  +PL   L+  + Y+   DI   LI+ G DIN K+  G TPL
Sbjct: 54  VKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPL 113

Query: 261 LEAIKCGHDG---VTSLLVKEGASLNVDDAGSF--LCIAVARG---DSDLLKRVLSNGVD 312
              +  G+     +   +++ GA   + D   F  L + +      D +++K +L  GVD
Sbjct: 114 YCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVD 173

Query: 313 PN 314
            N
Sbjct: 174 IN 175

Length = 489

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 274 LLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVA 327
           LL      LN  D      L +A   G  +L++ +L  GVD N RD D  T L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional

 Score = 44.2 bits (104), Expect = 9e-05
 Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 54/217 (24%)

Query: 130 ICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEGKESNLRLKQVE----SDITFHIGK 185
           +C +  L R DK++ + IL+    D   VL ++L           +E     DI   + +
Sbjct: 305 MCSIVPLWRNDKETISLILKTMNSD---VLQHIL-----------IEYMTFGDIDIPLVE 350

Query: 186 HEAELALRFNSAAYHG-------DLYQLKGLIR--AGADLNKTDYDGRSPL-HLATSR-G 234
              E     N  A HG       D Y +K L++   G  +N  D DG  P+ HL  S  G
Sbjct: 351 CMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLD-DGEIPIGHLCKSNYG 409

Query: 235 YEDITLFLIQKGV---------------------DINIKDKFGNTPLLEAIKCGHDGVTS 273
             +   +  +KG+                     DIN+ DK G T L +A++     + S
Sbjct: 410 CYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVS 469

Query: 274 LLVKEGASLNVDDAGSFLCIAVARGDS---DLLKRVL 307
           LL++ G+ +N+     + CIA+A  +S   +LLK +L
Sbjct: 470 LLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLL 506

Length = 661

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 222 DGRSPLHLATSRGYEDITLFLIQKGVDINI 251
           DGR+PLHLA   G  ++   L+ KG DIN 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLF-LIQKGVDINIKDKFGNTPLLEAIK 265
           +++ G   +K D+DG +PLH+  S+  +++ +  L+    D+N ++KFG++PL   IK
Sbjct: 194 MMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTLLIK 251

Length = 446

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 222 DGRSPLHLATSRGYEDITLFLIQKGVDINI 251
           DG +PLHLA   G  ++   L++ G DIN 
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 205 QLKGLIRAGADLN-KTDYDGRSPLHLAT-SRGYEDITLFLIQKGVDINIKDKFGNTPLLE 262
           +LK L+  GAD+N K    G +PLH+A  ++ YE  T    Q GV++ I +    TP   
Sbjct: 73  KLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYV 132

Query: 263 AIKCGHDGVTSLLVKEGASLNV 284
           A +     + ++L  +GA   V
Sbjct: 133 ACERHDAKMMNILRAKGAQCKV 154

Length = 154

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 286
           GNTPL  A + GH  V  LL++ GA +N  D
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|234384 TIGR03896, cyc_nuc_ocin, bacteriocin-type transport-associated protein

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 69  GEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSIL-CNIPQPYT 127
           G +++ +G  +D LY + +G    + +  DG    V   +     GE   L  ++P   T
Sbjct: 169 GTILIHEGGTVDALYILLYGEAS-LSISPDGPGREVGSSRRGEILGETPFLNGSLPGTAT 227

Query: 128 VRICELSRLLRIDKQSFTSILE 149
           V+  E S LL IDKQ   + L+
Sbjct: 228 VKAIENSVLLAIDKQQLAAKLQ 249

Members of this protein family are uncharacterized and contain two copies of the cyclic nucleotide-binding domain pfam00027. Members are restricted to select cyanobacteria but are found regularly in association with a transport operon that, in turn, is associated with the production of putative bacteriocins. The models describing the transport operon are TIGR03794, TIGR03796, and TIGR03797. Length = 317

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 38/179 (21%), Positives = 59/179 (32%), Gaps = 37/179 (20%)

Query: 197 AAYHGDLYQLKGLIRAGADLN---------KTD-----YDGRSPLHLATSRGYEDITLFL 242
           AA+  +   +K L+  GA +          K+      Y G SPL+ A   G   I   L
Sbjct: 135 AAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALL 194

Query: 243 IQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDL 302
            +   DI   D  GNT LL            ++  E  +             ++    + 
Sbjct: 195 SEDPADILTADSLGNT-LLHL---------LVMENEFKAEY---------EELSCQMYNF 235

Query: 303 LKRVLSNGVDPNS----RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 357
              +L    D        ++   TPL +AA EG  ++ +L L           W N   
Sbjct: 236 ALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVAWPNGQQ 294

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 45/183 (24%), Positives = 66/183 (36%), Gaps = 38/183 (20%)

Query: 226 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH---------------DG 270
           PLH A      D+   L+ +G ++N  D    TPL   I C                   
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPL--HIICKEPNKLGMKEMIRSINKCS 97

Query: 271 VTSLLVKEGASLNVDDAGSFLCIAVARG--------------------DSDLLKRVLSNG 310
           V   LV    + N  +   F  I   R                     ++++ K +LS G
Sbjct: 98  VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYG 157

Query: 311 VDPNSRDYDH-RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 369
            D N +D     T LH A       + +LLL  GA+V   D+  N+PL       NK ++
Sbjct: 158 ADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIV 217

Query: 370 KLL 372
            +L
Sbjct: 218 HIL 220

Length = 477

>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 32/183 (17%)

Query: 198 AYHGDLYQ----LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQK----GVDI 249
           AY G++Y     L+ L   G ++N  +    +PLH     G  ++   +I+K    G D+
Sbjct: 183 AYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITG--NVCASVIKKIIELGGDM 240

Query: 250 NIKDKFGNTPLLEAIKCGHDGVTSLLVK-EGASLNVDDAGS-----FLCIAVARG-DSDL 302
           ++K   G +P++  I    D +   +      SL+ +   +        I +AR  D  +
Sbjct: 241 DMKCVNGMSPIMTYI-INIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISV 299

Query: 303 LKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLM--------AKLLLEAGASVFTKDRWGN 354
           +   L  GV  + +D   RT LH       Y++         KLL E G  +   D  GN
Sbjct: 300 VYSFLQPGVKLHYKDSAGRTCLHQ------YILRHNISTDIIKLLHEYGNDLNEPDNIGN 353

Query: 355 TPL 357
           T L
Sbjct: 354 TVL 356

Length = 764

>gnl|CDD|181817 PRK09392, ftrB, transcriptional activator FtrB; Provisional

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 1/105 (0%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDG 99
           +  + LF   +     +++     + F PG +++ +G   D L+ V  G L E+      
Sbjct: 9   LRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDG-LVELSASSQD 67

Query: 100 SEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSF 144
            E T++ L+P S+F   +++ + P   + R    SR+L I  +  
Sbjct: 68  RETTLAILRPVSTFILAAVVLDAPYLMSARTLTRSRVLMIPAELV 112

Length = 236

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 265
            I +  D+N+ D  G +PL+ + S     I  +L+Q G DINI  + GNT L  A +
Sbjct: 244 FIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFE 300

Length = 489

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 319 DHRTPLHVAASEGLYLMAKLLLEAGASV 346
           D RTPLH+AA  G   + KLLL+ GA +
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADI 28

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 37/179 (20%)

Query: 206 LKGLIRAGADLNKTDYDGRSPLHLATSRGY--EDITLFLIQKGVDINIKDKFGNTPLLEA 263
           L+ L+R G D+N+  Y G S L L   R      I   LI  G D+N K  +  TPL   
Sbjct: 19  LEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAV 76

Query: 264 IK------CGHDGVTSLLVKEGASLN---VDDAGSFLCIAVAR--GDSDLLKRVLSNGVD 312
           ++           +  LL+K GA +N    +     +C        + D+L+ +LS G++
Sbjct: 77  LRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGIN 136

Query: 313 ----PNSRDYDHRTPLHVAASEGLYL--------MAKLLLEAGASVF-TKDRWGNTPLD 358
                NSR Y+    LH      +YL        + K+LL  G ++F     +G TP++
Sbjct: 137 VNDVKNSRGYN---LLH------MYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMN 186

Length = 494

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	403
PLN03192	823	Voltage-dependent potassium channel; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA03095	471	ankyrin-like protein; Provisional	99.98
PHA02878	477	ankyrin repeat protein; Provisional	99.98
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.98
PHA02989	494	ankyrin repeat protein; Provisional	99.98
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02730	672	ankyrin-like protein; Provisional	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.94
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.94
PHA02730	672	ankyrin-like protein; Provisional	99.94
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
PHA02792	631	ankyrin-like protein; Provisional	99.93
PHA02792	631	ankyrin-like protein; Provisional	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
PHA02741	169	hypothetical protein; Provisional	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.89
PHA02884	300	ankyrin repeat protein; Provisional	99.88
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.87
PHA02884	300	ankyrin repeat protein; Provisional	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.86
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.86
PHA02741	169	hypothetical protein; Provisional	99.85
KOG0514	452	consensus Ankyrin repeat protein [General function	99.85
PHA02736	154	Viral ankyrin protein; Provisional	99.84
KOG0498	727	consensus K+-channel ERG and related proteins, con	99.83
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.82
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.79
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.78
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.77
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.77
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.76
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.75
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.75
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.74
PRK09392	236	ftrB transcriptional activator FtrB; Provisional	99.7
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.68
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.63
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.62
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	99.62
cd00038	115	CAP_ED effector domain of the CAP family of transc	99.61
PRK11161	235	fumarate/nitrate reduction transcriptional regulat	99.58
PRK10402	226	DNA-binding transcriptional activator YeiL; Provis	99.55
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.55
KOG0500	536	consensus Cyclic nucleotide-gated cation channel C	99.55
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	99.55
smart00100	120	cNMP Cyclic nucleotide-monophosphate binding domai	99.55
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.53
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.53
COG0664	214	Crp cAMP-binding proteins - catabolite gene activa	99.52
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.52
KOG1113	368	consensus cAMP-dependent protein kinase types I an	99.5
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.45
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.45
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.44
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.43
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.43
PLN02868	413	acyl-CoA thioesterase family protein	99.42
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.42
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.39
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.39
TIGR03697	193	NtcA_cyano global nitrogen regulator NtcA, cyanoba	99.38
PRK09391	230	fixK transcriptional regulator FixK; Provisional	99.38
COG2905	610	Predicted signal-transduction protein containing c	99.36
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.35
PRK13918	202	CRP/FNR family transcriptional regulator; Provisio	99.33
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.28
KOG0499	815	consensus Cyclic nucleotide-gated cation channel C	99.23
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.0
KOG1113	368	consensus cAMP-dependent protein kinase types I an	99.0
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.9
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.89
PF13606	30	Ank_3: Ankyrin repeat	98.88
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.88
KOG0501	971	consensus K+-channel KCNQ [Inorganic ion transport	98.82
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.81
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.75
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.75
PF13606	30	Ank_3: Ankyrin repeat	98.73
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.72
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.71
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.7
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.66
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.65
KOG0522	560	consensus Ankyrin repeat protein [General function	98.64
KOG2968	1158	consensus Predicted esterase of the alpha-beta hyd	98.62
KOG0522	560	consensus Ankyrin repeat protein [General function	98.54
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.53
KOG2384	223	consensus Major histocompatibility complex protein	98.5
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.48
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.44
KOG0511	516	consensus Ankyrin repeat protein [General function	98.16
KOG0511	516	consensus Ankyrin repeat protein [General function	98.13
KOG2384	223	consensus Major histocompatibility complex protein	98.11
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.05
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.02
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.01
PF04831	153	Popeye: Popeye protein conserved region; InterPro:	97.87
KOG2968	1158	consensus Predicted esterase of the alpha-beta hyd	97.55
KOG2505	591	consensus Ankyrin repeat protein [General function	97.5
PRK11832	207	putative DNA-binding transcriptional regulator; Pr	97.35
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.01
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.77
KOG2505	591	consensus Ankyrin repeat protein [General function	96.65
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.02
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.93
KOG3542	1283	consensus cAMP-regulated guanine nucleotide exchan	95.87
KOG3542	1283	consensus cAMP-regulated guanine nucleotide exchan	95.03
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.92
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.75
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	91.06
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	87.28

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=100.00  E-value=2.4e-50  Score=414.04  Aligned_cols=349  Identities=29%  Similarity=0.450  Sum_probs=317.2

Q ss_pred             ccceeeeeeeecChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEE
Q 015680           14 KEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEV   93 (403)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~   93 (403)
                      .++.++++.||..++.+++++++.+.++++++|++++++++.++...++.+.|+|||.|+.+||.++.+|||++|.|+++
T Consensus       350 ~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~  429 (823)
T PLN03192        350 LNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEII  429 (823)
T ss_pred             ccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eecCCCCeeEeeeecCCCcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhcccc----c
Q 015680           94 GVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEGKES----N  169 (403)
Q Consensus        94 ~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~~~~----~  169 (403)
                      . ..+|++.++..+.+|++||+.+++.+.+++++++|.++|++++++++.|.++++.+++....++..+++....    .
T Consensus       430 ~-~~~~~e~~l~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~~l~~l~  508 (823)
T PLN03192        430 D-SEGEKERVVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHKELHDLN  508 (823)
T ss_pred             E-ecCCcceeeEEccCCCEecchHHhcCCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhhhhcccc
Confidence            5 5567888999999999999999999999999999999999999999999999999999999999988875321    1


Q ss_pred             hhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCC
Q 015680          170 LRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI  249 (403)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  249 (403)
                      +.....+...    ...+.+..++|+.||..|+.++++.|++.|+++|..|..|+||||+|+..|+.+++++|+++|+++
T Consensus       509 v~~ll~~~~~----~~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi  584 (823)
T PLN03192        509 VGDLLGDNGG----EHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV  584 (823)
T ss_pred             HHHHHhhccc----ccCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC
Confidence            1111111111    122334568899999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 015680          250 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS  329 (403)
Q Consensus       250 ~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~  329 (403)
                      |.+|..|+||||+|+..|+.+++++|++.++..+..++.++||+|+..|+.++++.|+++|++++.+|.+|+||||+|+.
T Consensus       585 n~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~  664 (823)
T PLN03192        585 HIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMA  664 (823)
T ss_pred             CCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            99999999999999999999999999999888887888899999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHcCCCcccCCCCC-CCHHHHHHHcCCHH
Q 015680          330 EGLYLMAKLLLEAGASVFTKDRWG-NTPLDEGRMCGNKN  367 (403)
Q Consensus       330 ~~~~~~~~~Ll~~g~d~~~~~~~g-~t~l~~A~~~~~~~  367 (403)
                      .|+.+++++|+++|+|++..|..| .||++++......+
T Consensus       665 ~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~~~~  703 (823)
T PLN03192        665 EDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQKRE  703 (823)
T ss_pred             CCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHHHhh
Confidence            999999999999999999999988 89999887655444

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.4e-37  Score=274.15  Aligned_cols=210  Identities=21%  Similarity=0.134  Sum_probs=188.7

Q ss_pred             chhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHH
Q 015680          186 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  265 (403)
Q Consensus       186 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~  265 (403)
                      .+.+|.||||+|+..|+.++++.|++.|++++..+  ++||||+|+..|+.+++++|++.|++++.+|..|+||||+|+.
T Consensus        26 ~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~  103 (284)
T PHA02791         26 ADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVD  103 (284)
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            56778999999999999999999999999988664  6899999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHcCCCccccC--C-CchHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHcCcHHHHHHHHH
Q 015680          266 CGHDGVTSLLVKEGASLNVDD--A-GSFLCIAVARGDSDLLKRVLSNGVDPNSRD-YDHRTPLHVAASEGLYLMAKLLLE  341 (403)
Q Consensus       266 ~~~~~~v~~L~~~~~~~~~~~--~-~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~~~~Ll~  341 (403)
                      .|+.+++++|+++|++++..+  | .||||+|+..|+.+++++|++++.+.  .| ..|.||||+|+..|+.+++++|++
T Consensus       104 ~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~  181 (284)
T PHA02791        104 SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLD  181 (284)
T ss_pred             cCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999998765  3 48999999999999999999987543  23 258999999999999999999999


Q ss_pred             cCCCcccCCCCCCCH-HHHHHHcCCHHHHHHHHHccccccccccc-cccchhhhhhhhcc
Q 015680          342 AGASVFTKDRWGNTP-LDEGRMCGNKNLIKLLEDAKCTQLSEFHY-CSQGMIGIAENLLL  399 (403)
Q Consensus       342 ~g~d~~~~~~~g~t~-l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~~~~~~~~~~~l~~  399 (403)
                      +|++++.+|..|.|| ||+|+.+|+.++|++|+++|++.-.+..- ..-++.++++.||.
T Consensus       182 ~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~~~l~~~e~~~~ll~  241 (284)
T PHA02791        182 YMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLENVLLDDAEIAKMIIE  241 (284)
T ss_pred             CCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccCccCCCHHHHHHHHH
Confidence            999999999999987 99999999999999999999987655432 22467788888874

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.2e-37  Score=241.78  Aligned_cols=192  Identities=31%  Similarity=0.418  Sum_probs=125.7

Q ss_pred             hhHHHhhccCCHHHHHHHHHcCC-CccccCC-CCCcHHHHHHHcCcHHHHHHHH-hcCCCCCcCCCCCCcHHHHHHHcCC
Q 015680          192 LRFNSAAYHGDLYQLKGLIRAGA-DLNKTDY-DGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKFGNTPLLEAIKCGH  268 (403)
Q Consensus       192 ~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll-~~~~~~~~~~~~g~t~l~~A~~~~~  268 (403)
                      ++.+.+|+......++-++...+ .++.++. .|+||||+||+.|+.+++.+|+ +.+..+|.+|..||||||.||..|+
T Consensus         5 ~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~   84 (226)
T KOG4412|consen    5 SLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGN   84 (226)
T ss_pred             chHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCc
Confidence            34455555555566666665554 4555443 6667777777777777777666 3455666666667777777777776


Q ss_pred             hHHHHHHHHc-CCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCC
Q 015680          269 DGVTSLLVKE-GASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  345 (403)
Q Consensus       269 ~~~v~~L~~~-~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d  345 (403)
                      .++|+.|+.+ |+++|..+  |.|+||+|+..|+.+|+++|+++|+.++..|..|.||||.|+..|+.+++++|+..|+.
T Consensus        85 ~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~  164 (226)
T KOG4412|consen   85 DEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAP  164 (226)
T ss_pred             HHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCC
Confidence            6777666666 66666544  45667777777777777777777766666666677777777777777777777776666


Q ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccccc
Q 015680          346 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF  383 (403)
Q Consensus       346 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~  383 (403)
                      +|.+|+.|+||||.|...|+.+...+|+++|++...+.
T Consensus       165 ~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~ed  202 (226)
T KOG4412|consen  165 LNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDRED  202 (226)
T ss_pred             CCcccccCccHHHHHHhccCchHHHHHHHhccceeecc
Confidence            66677777777777766666676667777766655444

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.2e-37  Score=240.16  Aligned_cols=176  Identities=28%  Similarity=0.356  Sum_probs=166.2

Q ss_pred             chhhHhhhHHHhhccCCHHHHHHHHH-cCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhc-CCCCCcCCCCCCcHHHHH
Q 015680          186 HEAELALRFNSAAYHGDLYQLKGLIR-AGADLNKTDYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEA  263 (403)
Q Consensus       186 ~~~~~~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~A  263 (403)
                      .+-++++|||+||+.|+.+++.+|++ .+..+|..|..||||||+|++.|+.++|+.|+.. |+|+|..+..|.|+||||
T Consensus        34 ~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyA  113 (226)
T KOG4412|consen   34 DDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYA  113 (226)
T ss_pred             ccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhh
Confidence            34578999999999999999999996 4677888999999999999999999999999998 999999999999999999


Q ss_pred             HHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHH
Q 015680          264 IKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE  341 (403)
Q Consensus       264 ~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~  341 (403)
                      +..|+.+++++|+++|+.++.+|  +.||||.|+..|+.+++++|+..|+.+|.+|..|+||||.|...|+.++..+|++
T Consensus       114 agK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~  193 (226)
T KOG4412|consen  114 AGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVR  193 (226)
T ss_pred             hcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHH
Confidence            99999999999999999999988  6799999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccCCCCCCCHHHHHHH
Q 015680          342 AGASVFTKDRWGNTPLDEGRM  362 (403)
Q Consensus       342 ~g~d~~~~~~~g~t~l~~A~~  362 (403)
                      .|+|....|+.| ||+..|..
T Consensus       194 ~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  194 AGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             hccceeeccccC-chHHHHHH
Confidence            999999999988 99776653

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.5e-34  Score=256.99  Aligned_cols=182  Identities=18%  Similarity=0.193  Sum_probs=169.7

Q ss_pred             HhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCC-cHHHHHHHcCC
Q 015680          190 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGN-TPLLEAIKCGH  268 (403)
Q Consensus       190 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~-t~l~~A~~~~~  268 (403)
                      +.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|+ ||||+|+..|+
T Consensus        61 ~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~  140 (284)
T PHA02791         61 NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND  140 (284)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCC
Confidence            47999999999999999999999999999999999999999999999999999999999999998885 89999999999


Q ss_pred             hHHHHHHHHcCCCcc-ccCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChH-HHHHHHcCcHHHHHHHHHcCCCc
Q 015680          269 DGVTSLLVKEGASLN-VDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP-LHVAASEGLYLMAKLLLEAGASV  346 (403)
Q Consensus       269 ~~~v~~L~~~~~~~~-~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~-Lh~A~~~~~~~~~~~Ll~~g~d~  346 (403)
                      .+++++|++++++.. ...|.||||+|+..|+.+++++|+++|++++..|..|.|| ||+|+..|+.+++++|+++|+++
T Consensus       141 ~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~i  220 (284)
T PHA02791        141 VSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINI  220 (284)
T ss_pred             HHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            999999999976543 2357899999999999999999999999999999999987 99999999999999999999999


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcccc
Q 015680          347 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT  378 (403)
Q Consensus       347 ~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  378 (403)
                      +.+|..| |||      ++.|++++|+++.++
T Consensus       221 n~~~~~~-~~l------~~~e~~~~ll~~~~~  245 (284)
T PHA02791        221 YSVNLEN-VLL------DDAEIAKMIIEKHVE  245 (284)
T ss_pred             ccCcccC-ccC------CCHHHHHHHHHhhhh
Confidence            9999854 665      899999999999885

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.4e-34  Score=272.54  Aligned_cols=237  Identities=20%  Similarity=0.137  Sum_probs=205.2

Q ss_pred             HHHHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcH
Q 015680          157 KVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYE  236 (403)
Q Consensus       157 ~ll~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~  236 (403)
                      ..+..+...+..++...+++.+.+.+  .....|.||||+|+..|+.+++++|++.|++++..+..+.||||.|+..|+.
T Consensus         4 ~~L~~A~~~g~~~iv~~Ll~~g~~~n--~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~   81 (413)
T PHA02875          4 VALCDAILFGELDIARRLLDIGINPN--FEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDV   81 (413)
T ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCC--ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence            44566677777777777776655444  3445689999999999999999999999999988888899999999999999


Q ss_pred             HHHHHHHhcCCCCC-cCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCC
Q 015680          237 DITLFLIQKGVDIN-IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDP  313 (403)
Q Consensus       237 ~~~~~Ll~~~~~~~-~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~  313 (403)
                      +++++|++.|.+++ ..+..|+||||+|+..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|+++|+++
T Consensus        82 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~  161 (413)
T PHA02875         82 KAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL  161 (413)
T ss_pred             HHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Confidence            99999999998764 456779999999999999999999999999988765  779999999999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCC-CHHHHHHHcCCHHHHHHHHHccccccccc--cccccch
Q 015680          314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN-TPLDEGRMCGNKNLIKLLEDAKCTQLSEF--HYCSQGM  390 (403)
Q Consensus       314 ~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~-t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~~~~  390 (403)
                      +.+|..|.||||+|+..|+.+++++|+++|++++..+..|. ||+|+|+.+|+.+++++|+++|++.-...  .-...++
T Consensus       162 ~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~  241 (413)
T PHA02875        162 DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTI  241 (413)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHH
Confidence            99999999999999999999999999999999999988875 88999999999999999999999865432  2234556


Q ss_pred             hhhhh
Q 015680          391 IGIAE  395 (403)
Q Consensus       391 ~~~~~  395 (403)
                      ++++.
T Consensus       242 l~~~~  246 (413)
T PHA02875        242 LDMIC  246 (413)
T ss_pred             HHHHH
Confidence            66654

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-33  Score=271.61  Aligned_cols=210  Identities=23%  Similarity=0.251  Sum_probs=193.7

Q ss_pred             hhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChH
Q 015680          191 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG  270 (403)
Q Consensus       191 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~  270 (403)
                      .++|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..+.||||+|+..|+.+
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~   82 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK   82 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence            46799999999999999999999999999999999999999999999999999999999999899999999999999999


Q ss_pred             HHHHHHHcCCCccc---cCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcc
Q 015680          271 VTSLLVKEGASLNV---DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF  347 (403)
Q Consensus       271 ~v~~L~~~~~~~~~---~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~  347 (403)
                      ++++|++.|...+.   .+|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus        83 ~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~  162 (413)
T PHA02875         83 AVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD  162 (413)
T ss_pred             HHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence            99999999976543   468899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccc---------ccccchhhhhhhhccc
Q 015680          348 TKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFH---------YCSQGMIGIAENLLLL  400 (403)
Q Consensus       348 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~---------~~~~~~~~~~~~l~~~  400 (403)
                      .+|..|.||||+|+..|+.+++++|+++|++.-....         ....+..++++.|+.-
T Consensus       163 ~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~  224 (413)
T PHA02875        163 IEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR  224 (413)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHC
Confidence            9999999999999999999999999999998653322         2445667888888754

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.1e-34  Score=278.25  Aligned_cols=197  Identities=30%  Similarity=0.388  Sum_probs=187.0

Q ss_pred             CcchhhHhhhHHHhh--ccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcC--cHHHHHHHHhcCCCCCcCCCCCCcH
Q 015680          184 GKHEAELALRFNSAA--YHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG--YEDITLFLIQKGVDINIKDKFGNTP  259 (403)
Q Consensus       184 ~~~~~~~~~~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~~~g~t~  259 (403)
                      ...+..|.||||+|+  ..|+.+++++|++.|++++..+..|.||||+|+..|  +.+++++|+++|++++.++..|.||
T Consensus       100 ~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tp  179 (480)
T PHA03100        100 NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTP  179 (480)
T ss_pred             CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCH
Confidence            445677899999999  999999999999999999999999999999999999  9999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHcCCCccccC--C------CchHHHHHHcCC--HHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 015680          260 LLEAIKCGHDGVTSLLVKEGASLNVDD--A------GSFLCIAVARGD--SDLLKRVLSNGVDPNSRDYDHRTPLHVAAS  329 (403)
Q Consensus       260 l~~A~~~~~~~~v~~L~~~~~~~~~~~--~------~~~l~~a~~~~~--~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~  329 (403)
                      ||+|+..|+.+++++|+++|++++..+  +      .+|+|+|+..|+  .+++++|++.|++++.+|..|.||||+|+.
T Consensus       180 L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~  259 (480)
T PHA03100        180 LHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVY  259 (480)
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            999999999999999999999998765  4      689999999999  999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcccccc
Q 015680          330 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQL  380 (403)
Q Consensus       330 ~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~  380 (403)
                      .|+.+++++|+++|+|++.+|..|.||+|+|+.+++.+++++|+++|++.-
T Consensus       260 ~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        260 NNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHH
Confidence            999999999999999999999999999999999999999999999999644

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.9e-33  Score=269.24  Aligned_cols=205  Identities=20%  Similarity=0.256  Sum_probs=181.1

Q ss_pred             hhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcC--cHHHHHHHHhcCC
Q 015680          170 LRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG--YEDITLFLIQKGV  247 (403)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~  247 (403)
                      +...++....  ..+..+.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+  ..+++++|+++|+
T Consensus        54 iv~~Ll~~Ga--dvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Ga  131 (446)
T PHA02946         54 FVEELLHRGY--SPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGA  131 (446)
T ss_pred             HHHHHHHCcC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC
Confidence            3444444433  34566788999999999999999999999999999999999999999998866  4799999999999


Q ss_pred             CCCc-CCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCC--HHHHHHHHHCCCCCCCCCCCCCh
Q 015680          248 DINI-KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGD--SDLLKRVLSNGVDPNSRDYDHRT  322 (403)
Q Consensus       248 ~~~~-~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~--~~~v~~Ll~~~~~~~~~~~~g~t  322 (403)
                      +++. .|..|.|||| |+..|+.+++++|+++|++++..+  |.||||+|+..++  .+++++|++.|++++..|.+|+|
T Consensus       132 din~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~T  210 (446)
T PHA02946        132 KINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNT  210 (446)
T ss_pred             CcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCC
Confidence            9995 6889999997 667789999999999999988765  7799999887665  68999999999999999999999


Q ss_pred             HHHHHHHcC--cHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCC-HHHHHHHHHcccc
Q 015680          323 PLHVAASEG--LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN-KNLIKLLEDAKCT  378 (403)
Q Consensus       323 ~Lh~A~~~~--~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~-~~~v~~Ll~~~~~  378 (403)
                      |||+|+..+  +.+++++|+. |++++.+|..|.||||+|+.+++ .+++++|+++|++
T Consensus       211 pLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~  268 (446)
T PHA02946        211 PLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNV  268 (446)
T ss_pred             HHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCC
Confidence            999999986  8899999985 89999999999999999999998 4899999998864

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.9e-33  Score=273.94  Aligned_cols=243  Identities=25%  Similarity=0.300  Sum_probs=210.2

Q ss_pred             chHHHHHhhhccccchhhhhcccceeeecCcchhhHhhhHHH-----hhccCCHHHHHHHHHcCCCccccCCCCCcHHHH
Q 015680          155 GRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNS-----AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHL  229 (403)
Q Consensus       155 ~~~ll~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~  229 (403)
                      +...++.+.+.+..++...+++.+.+.  ...+..+.+|||.     |+..|+.+++++|++.|++++..+..|.||||+
T Consensus        35 ~~t~L~~A~~~~~~~ivk~Ll~~g~~~--~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~  112 (480)
T PHA03100         35 PVLPLYLAKEARNIDVVKILLDNGADI--NSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLY  112 (480)
T ss_pred             cchhhhhhhccCCHHHHHHHHHcCCCC--CCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhH
Confidence            344555555555555555555544333  3445567899999     999999999999999999999999999999999


Q ss_pred             HH--HcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcC--ChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHH
Q 015680          230 AT--SRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG--HDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLL  303 (403)
Q Consensus       230 A~--~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~--~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v  303 (403)
                      |+  ..|+.+++++|++.|++++..+..|.||||+|+..|  +.+++++|+++|++++..+  |.||||+|+..|+.+++
T Consensus       113 A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv  192 (480)
T PHA03100        113 AISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVI  192 (480)
T ss_pred             HHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHH
Confidence            99  999999999999999999999999999999999999  9999999999999998755  77999999999999999


Q ss_pred             HHHHHCCCCCCCCCCCC------ChHHHHHHHcCc--HHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 015680          304 KRVLSNGVDPNSRDYDH------RTPLHVAASEGL--YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA  375 (403)
Q Consensus       304 ~~Ll~~~~~~~~~~~~g------~t~Lh~A~~~~~--~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  375 (403)
                      ++|++.|++++..+..|      .||||.|+..|+  .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus       193 ~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  272 (480)
T PHA03100        193 KFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDL  272 (480)
T ss_pred             HHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            99999999999999988      999999999999  9999999999999999999999999999999999999999999


Q ss_pred             cccccccccc--------cccchhhhhhhhcc
Q 015680          376 KCTQLSEFHY--------CSQGMIGIAENLLL  399 (403)
Q Consensus       376 ~~~~~~~~~~--------~~~~~~~~~~~l~~  399 (403)
                      |++.-.....        ...+..++++.|+.
T Consensus       273 gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~  304 (480)
T PHA03100        273 GANPNLVNKYGDTPLHIAILNNNKEIFKLLLN  304 (480)
T ss_pred             CCCCCccCCCCCcHHHHHHHhCCHHHHHHHHh
Confidence            9965543322        23345566666654

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.9e-33  Score=270.13  Aligned_cols=203  Identities=30%  Similarity=0.363  Sum_probs=175.4

Q ss_pred             hhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcH-------------------------------
Q 015680          188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYE-------------------------------  236 (403)
Q Consensus       188 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~-------------------------------  236 (403)
                      ..+.+|||.|+..|+.+++++|+++|++++..+..|+||||+||..|+.                               
T Consensus        35 ~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~  114 (477)
T PHA02878         35 LIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNV  114 (477)
T ss_pred             ccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCH
Confidence            3456899999999999999999999999999999999999999876543                               


Q ss_pred             ---------------------------------HHHHHHHhcCCCCCcCCCC-CCcHHHHHHHcCChHHHHHHHHcCCCc
Q 015680          237 ---------------------------------DITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSLLVKEGASL  282 (403)
Q Consensus       237 ---------------------------------~~~~~Ll~~~~~~~~~~~~-g~t~l~~A~~~~~~~~v~~L~~~~~~~  282 (403)
                                                       +++++|+++|++++.++.. |.||||+|+..|+.+++++|+++|+++
T Consensus       115 ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~  194 (477)
T PHA02878        115 EIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV  194 (477)
T ss_pred             HHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC
Confidence                                             2667777788899999888 999999999999999999999999998


Q ss_pred             cccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc-CcHHHHHHHHHcCCCcccCCC-CCCCHHH
Q 015680          283 NVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASE-GLYLMAKLLLEAGASVFTKDR-WGNTPLD  358 (403)
Q Consensus       283 ~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~-~~~~~~~~Ll~~g~d~~~~~~-~g~t~l~  358 (403)
                      +..+  |.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.. ++.+++++|+++|++++.++. .|.||||
T Consensus       195 n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh  274 (477)
T PHA02878        195 NIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALH  274 (477)
T ss_pred             CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHH
Confidence            8765  77999999999999999999999999999999999999999976 689999999999999998886 7999999


Q ss_pred             HHHHcCCHHHHHHHHHccccccccccccccchhhh
Q 015680          359 EGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGI  393 (403)
Q Consensus       359 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  393 (403)
                      +|  .++.+++++|+++|++.-... ..+.+++.+
T Consensus       275 ~A--~~~~~~v~~Ll~~gadin~~d-~~g~TpL~~  306 (477)
T PHA02878        275 SS--IKSERKLKLLLEYGADINSLN-SYKLTPLSS  306 (477)
T ss_pred             HH--ccCHHHHHHHHHCCCCCCCcC-CCCCCHHHH
Confidence            99  577899999999999865543 233444433

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=265.29  Aligned_cols=233  Identities=25%  Similarity=0.270  Sum_probs=124.8

Q ss_pred             HHHHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCC----------------------
Q 015680          157 KVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGA----------------------  214 (403)
Q Consensus       157 ~ll~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~----------------------  214 (403)
                      ..++.+...+..++...+++.+.+.+  ..+..+.+|||.|+..|+.+++++|++.|+                      
T Consensus        37 tpL~~A~~~g~~~iv~~Ll~~Ga~~n--~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g  114 (434)
T PHA02874         37 TPLIDAIRSGDAKIVELFIKHGADIN--HINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCG  114 (434)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCc
Confidence            33444444444444444443333222  223334455555555555555555554432                      


Q ss_pred             -CccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchH
Q 015680          215 -DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFL  291 (403)
Q Consensus       215 -~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l  291 (403)
                       +++.++..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+  |.|||
T Consensus       115 ~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL  194 (434)
T PHA02874        115 IDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPL  194 (434)
T ss_pred             CCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence             233344455555555555555555555555555555555555555555555555555555555555444332  44555


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcC-CHHHHH
Q 015680          292 CIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG-NKNLIK  370 (403)
Q Consensus       292 ~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~-~~~~v~  370 (403)
                      |+|+..|+.+++++|++.|++++..+..|.||||.|+..+. +++++|+ .|++++.+|..|.||||+|+..+ +.++++
T Consensus       195 ~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~  272 (434)
T PHA02874        195 HNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIID  272 (434)
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHH
Confidence            55555555555555555555555555555555555554433 2333333 35566677778888888888865 788999


Q ss_pred             HHHHccccccccccccccchhhhh
Q 015680          371 LLEDAKCTQLSEFHYCSQGMIGIA  394 (403)
Q Consensus       371 ~Ll~~~~~~~~~~~~~~~~~~~~~  394 (403)
                      +|+++|++.-.... .+.+++.++
T Consensus       273 ~Ll~~gad~n~~d~-~g~TpL~~A  295 (434)
T PHA02874        273 ILLYHKADISIKDN-KGENPIDTA  295 (434)
T ss_pred             HHHHCcCCCCCCCC-CCCCHHHHH
Confidence            99999887654432 334444443

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.8e-32  Score=264.76  Aligned_cols=193  Identities=29%  Similarity=0.391  Sum_probs=112.9

Q ss_pred             hhhHhhhHHHhhccC-CHHHHHHHHHcCCCccccCCCCCcHHHHHH--HcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHH
Q 015680          187 EAELALRFNSAAYHG-DLYQLKGLIRAGADLNKTDYDGRSPLHLAT--SRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  263 (403)
Q Consensus       187 ~~~~~~~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A  263 (403)
                      +..|.||||+|+..| ..+++++|+++|++++..+..|.||||+|+  ..++.+++++|++.|++++..|..|.||||+|
T Consensus        80 ~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a  159 (471)
T PHA03095         80 ERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVL  159 (471)
T ss_pred             CCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            335666677777776 466777777777776666666677777766  33456666777666666666666666666666


Q ss_pred             HHcC--ChHHHHHHHHcCCCccccC--CCchHHHHHHc--CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcH--HH
Q 015680          264 IKCG--HDGVTSLLVKEGASLNVDD--AGSFLCIAVAR--GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLY--LM  335 (403)
Q Consensus       264 ~~~~--~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~--~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~--~~  335 (403)
                      +..+  +.+++++|+++|++++..+  |.||+|+++..  ++.++++.|++.|++++.+|..|+||||+|+..|+.  .+
T Consensus       160 ~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~  239 (471)
T PHA03095        160 LKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSL  239 (471)
T ss_pred             HHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHH
Confidence            6554  3556666666666555433  44555555543  344555555555555555555555555555555432  34


Q ss_pred             HHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccc
Q 015680          336 AKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ  379 (403)
Q Consensus       336 ~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  379 (403)
                      ++.|+..|++++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       240 v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~  283 (471)
T PHA03095        240 VLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADI  283 (471)
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            44555555555555555555555555555555555555555543

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.4e-32  Score=264.96  Aligned_cols=210  Identities=25%  Similarity=0.276  Sum_probs=182.4

Q ss_pred             chhhhhcccceeeecCcchhhHhhhHHHhhcc-----CCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcC---cHHHHH
Q 015680          169 NLRLKQVESDITFHIGKHEAELALRFNSAAYH-----GDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG---YEDITL  240 (403)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~-----~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~---~~~~~~  240 (403)
                      ++...+++.+.  .++..+..|.||||.|+.+     +..+++++|+++|+++|..+..|+||||+|+..+   +.++++
T Consensus        52 ~iv~~Ll~~Ga--dvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~  129 (489)
T PHA02798         52 DIVKLFINLGA--NVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILL  129 (489)
T ss_pred             HHHHHHHHCCC--CCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHH
Confidence            33444444433  3445567789999998865     6799999999999999999999999999999875   789999


Q ss_pred             HHHhcCCCCCcCCCCCCcHHHHHHHcCC---hHHHHHHHHcCCCccccC---CCchHHHHHHcC----CHHHHHHHHHCC
Q 015680          241 FLIQKGVDINIKDKFGNTPLLEAIKCGH---DGVTSLLVKEGASLNVDD---AGSFLCIAVARG----DSDLLKRVLSNG  310 (403)
Q Consensus       241 ~Ll~~~~~~~~~~~~g~t~l~~A~~~~~---~~~v~~L~~~~~~~~~~~---~~~~l~~a~~~~----~~~~v~~Ll~~~  310 (403)
                      +|+++|++++.+|..|.||||+|+..++   .+++++|+++|++++..+   +.||+|.+...+    +.+++++|+++|
T Consensus       130 ~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~G  209 (489)
T PHA02798        130 FMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNG  209 (489)
T ss_pred             HHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCC
Confidence            9999999999999999999999999987   899999999999998764   568999887643    788888888877


Q ss_pred             CC---------------------------------------CCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCC
Q 015680          311 VD---------------------------------------PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR  351 (403)
Q Consensus       311 ~~---------------------------------------~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~  351 (403)
                      ++                                       +|.+|..|.||||+|+..|+.+++++|+++|+|++.+|.
T Consensus       210 a~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~  289 (489)
T PHA02798        210 FIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITE  289 (489)
T ss_pred             CCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCC
Confidence            64                                       445677899999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcccccc
Q 015680          352 WGNTPLDEGRMCGNKNLIKLLEDAKCTQL  380 (403)
Q Consensus       352 ~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~  380 (403)
                      .|.||||+|+.+++.++++.|++++++..
T Consensus       290 ~G~TpL~~A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        290 LGNTCLFTAFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             CCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence            99999999999999999999999998764

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-31  Score=257.60  Aligned_cols=195  Identities=28%  Similarity=0.363  Sum_probs=179.5

Q ss_pred             cCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHH
Q 015680          183 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE  262 (403)
Q Consensus       183 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~  262 (403)
                      ....+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+
T Consensus       117 ~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~  196 (434)
T PHA02874        117 VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHN  196 (434)
T ss_pred             CCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            34456778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC-cHHHHHHH
Q 015680          263 AIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEG-LYLMAKLL  339 (403)
Q Consensus       263 A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~-~~~~~~~L  339 (403)
                      |+..|+.+++++|+++|++++..+  |.||||+|+..++ +.+++|+ .|++++.+|..|+||||+|+..+ +.+++++|
T Consensus       197 A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~L  274 (434)
T PHA02874        197 AAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDIL  274 (434)
T ss_pred             HHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHH
Confidence            999999999999999999887654  7899999999876 5666666 68999999999999999999876 89999999


Q ss_pred             HHcCCCcccCCCCCCCHHHHHHHcC-CHHHHHHHHHccccc
Q 015680          340 LEAGASVFTKDRWGNTPLDEGRMCG-NKNLIKLLEDAKCTQ  379 (403)
Q Consensus       340 l~~g~d~~~~~~~g~t~l~~A~~~~-~~~~v~~Ll~~~~~~  379 (403)
                      +++|+|++.+|..|.||||+|+..+ ..++++.|++++...
T Consensus       275 l~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~  315 (434)
T PHA02874        275 LYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLI  315 (434)
T ss_pred             HHCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCch
Confidence            9999999999999999999999987 778999999988643

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.5e-31  Score=256.05  Aligned_cols=239  Identities=17%  Similarity=0.205  Sum_probs=185.6

Q ss_pred             HHHHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccC--CHHHHHHHHHcCCCccc-cCCCCCcHHHHHHHc
Q 015680          157 KVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHG--DLYQLKGLIRAGADLNK-TDYDGRSPLHLATSR  233 (403)
Q Consensus       157 ~ll~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~-~~~~g~t~L~~A~~~  233 (403)
                      ..++.+...+..++...++..+.+  .+..+.+|.||||+|+..+  ..+++++|+++|++++. .+..|.|||| |+..
T Consensus        74 TpLh~Aa~~g~~eiv~lLL~~GAd--in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~  150 (446)
T PHA02946         74 YPLHIASKINNNRIVAMLLTHGAD--PNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTD  150 (446)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCcCC--CCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHC
Confidence            334444444444444444443322  3345677889999988765  48899999999999985 5788999997 6677


Q ss_pred             CcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCC--hHHHHHHHHcCCCccccC--CCchHHHHHHcC--CHHHHHHHH
Q 015680          234 GYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH--DGVTSLLVKEGASLNVDD--AGSFLCIAVARG--DSDLLKRVL  307 (403)
Q Consensus       234 ~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~--~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~--~~~~v~~Ll  307 (403)
                      ++.+++++|++.|++++.+|..|+||||+|+..++  .+++++|+++|++++..|  |.||||+|+..+  +.+++++|+
T Consensus       151 ~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl  230 (446)
T PHA02946        151 PSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLL  230 (446)
T ss_pred             CChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHH
Confidence            88999999999999999999999999999887654  588999999999988755  779999999886  788999888


Q ss_pred             HCCCCCCCCCCCCChHHHHHHHcCc-HHHHHHHHHcCCCcc--------------------cC-CCCCCCHHHHHHHcCC
Q 015680          308 SNGVDPNSRDYDHRTPLHVAASEGL-YLMAKLLLEAGASVF--------------------TK-DRWGNTPLDEGRMCGN  365 (403)
Q Consensus       308 ~~~~~~~~~~~~g~t~Lh~A~~~~~-~~~~~~Ll~~g~d~~--------------------~~-~~~g~t~l~~A~~~~~  365 (403)
                      . |++++.+|..|.||||+|+..++ .+++++|+.+|++.+                    .. +..|.||||+|+.+|+
T Consensus       231 ~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~  309 (446)
T PHA02946        231 P-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGS  309 (446)
T ss_pred             c-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCC
Confidence            4 89999999999999999999887 488999998886531                    11 1357799999999999


Q ss_pred             HHHHHHHHHccccccccccc-cccchhhhhhhhcc
Q 015680          366 KNLIKLLEDAKCTQLSEFHY-CSQGMIGIAENLLL  399 (403)
Q Consensus       366 ~~~v~~Ll~~~~~~~~~~~~-~~~~~~~~~~~l~~  399 (403)
                      .++|++|+++|++...+..+ ..++..++++.|+.
T Consensus       310 ~eivk~Ll~~~~~~~t~L~~A~~~~~~~~v~~Ll~  344 (446)
T PHA02946        310 IRCVKYLLDNDIICEDAMYYAVLSEYETMVDYLLF  344 (446)
T ss_pred             HHHHHHHHHCCCccccHHHHHHHhCHHHHHHHHHH
Confidence            99999999998875544444 44567777777764

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=4.8e-32  Score=252.46  Aligned_cols=200  Identities=31%  Similarity=0.375  Sum_probs=113.1

Q ss_pred             hhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccC-CCCCcHHHHHHHcCcHHHHHH
Q 015680          163 LEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTD-YDGRSPLHLATSRGYEDITLF  241 (403)
Q Consensus       163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~  241 (403)
                      .+.+..+....+.+.+ ....+..|.+|.++||+|+.+++++++++|+++|+++|..+ ..+.||||+|+.+|++.+|.+
T Consensus        52 ~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~l  130 (600)
T KOG0509|consen   52 TQYGELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDL  130 (600)
T ss_pred             hhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHH
Confidence            3333333333334443 34444445555566666666666666666666666665554 445566666666666666666


Q ss_pred             HHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCC-C
Q 015680          242 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRD-Y  318 (403)
Q Consensus       242 Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~-~  318 (403)
                      |+++|+|++.+|..|.+|+|+|+..|+..+|-+|+.++++++..|  |+||||||+..|....+..|++.|+.+...| .
T Consensus       131 LlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~  210 (600)
T KOG0509|consen  131 LLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDN  210 (600)
T ss_pred             HHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccc
Confidence            666666666666666666666666666666666666555555544  4456666666665555555666665555555 4


Q ss_pred             CCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHc
Q 015680          319 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC  363 (403)
Q Consensus       319 ~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~  363 (403)
                      .|+||||+|+..|+..++.++++.|++.+.+|.+|.||+++|..+
T Consensus       211 ~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  211 HGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            566666666666666555544455555555555566666666555

>PHA03095 ankyrin-like protein; Provisional

Probab=99.98  E-value=2.9e-31  Score=259.30  Aligned_cols=196  Identities=20%  Similarity=0.229  Sum_probs=182.6

Q ss_pred             CcchhhHhhhHHHhh--ccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcC--cHHHHHHHHhcCCCCCcCCCCCCcH
Q 015680          184 GKHEAELALRFNSAA--YHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG--YEDITLFLIQKGVDINIKDKFGNTP  259 (403)
Q Consensus       184 ~~~~~~~~~~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~~~g~t~  259 (403)
                      +..+..|.||||+|+  ..++.+++++|++.|++++..+..|.||||+|+..+  +.+++++|++.|++++..|..|+||
T Consensus       111 n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~  190 (471)
T PHA03095        111 NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSL  190 (471)
T ss_pred             CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence            445667899999999  667899999999999999999999999999999876  6899999999999999889999999


Q ss_pred             HHHHHHc--CChHHHHHHHHcCCCccccC--CCchHHHHHHcCCH--HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcH
Q 015680          260 LLEAIKC--GHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDS--DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLY  333 (403)
Q Consensus       260 l~~A~~~--~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~--~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~  333 (403)
                      ||+|+..  ++.++++.|+++|++++..+  |.||||+|+..|+.  .+++.|++.|++++.+|..|+||||+|+..|+.
T Consensus       191 Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~  270 (471)
T PHA03095        191 LHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNP  270 (471)
T ss_pred             HHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            9999975  67889999999999999876  78999999999975  688999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccc
Q 015680          334 LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ  379 (403)
Q Consensus       334 ~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  379 (403)
                      +++++|+++|+|++.+|.+|.||||+|+.+|+.+++++|++++++.
T Consensus       271 ~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~  316 (471)
T PHA03095        271 RACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSA  316 (471)
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCH
Confidence            9999999999999999999999999999999999999999999875

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.98  E-value=3e-31  Score=258.68  Aligned_cols=171  Identities=34%  Similarity=0.441  Sum_probs=157.2

Q ss_pred             HHHHHHHcCCCccccCCC-CCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCcc
Q 015680          205 QLKGLIRAGADLNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN  283 (403)
Q Consensus       205 ~~~~ll~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~  283 (403)
                      ++++|++.|++++..+.. |.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus       149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in  228 (477)
T PHA02878        149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD  228 (477)
T ss_pred             HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            667777788889988888 9999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccC--CCchHHHHHHc-CCHHHHHHHHHCCCCCCCCCC-CCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHH
Q 015680          284 VDD--AGSFLCIAVAR-GDSDLLKRVLSNGVDPNSRDY-DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE  359 (403)
Q Consensus       284 ~~~--~~~~l~~a~~~-~~~~~v~~Ll~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~  359 (403)
                      ..+  |.||||+|+.. ++.+++++|+++|++++..+. .|.||||+|  .++.+++++|+++|+|++..|..|.||||+
T Consensus       229 ~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~  306 (477)
T PHA02878        229 ARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSS  306 (477)
T ss_pred             CCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            766  77999999976 789999999999999999886 799999999  577899999999999999999999999999


Q ss_pred             HHHcC-CHHHHHHHHHccc
Q 015680          360 GRMCG-NKNLIKLLEDAKC  377 (403)
Q Consensus       360 A~~~~-~~~~v~~Ll~~~~  377 (403)
                      |+..+ ..+++++|+.+..
T Consensus       307 A~~~~~~~~~~~~li~~~~  325 (477)
T PHA02878        307 AVKQYLCINIGRILISNIC  325 (477)
T ss_pred             HHHHcCccchHHHHHHHHH
Confidence            99864 5688888887653

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.98  E-value=4.7e-32  Score=252.56  Aligned_cols=204  Identities=33%  Similarity=0.458  Sum_probs=186.1

Q ss_pred             hhhHHHhhccCCHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCC-CCCCcHHHHHHHcCC
Q 015680          191 ALRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIKCGH  268 (403)
Q Consensus       191 ~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~A~~~~~  268 (403)
                      ...++.|++.|+++.++.+++. |.+++..|..|.|+||+|+.+++++++++|+++|+++|..+ .-+.||||+|+++|+
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence            4568899999999999999998 89999999999999999999999999999999999999988 668999999999999


Q ss_pred             hHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCc
Q 015680          269 DGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV  346 (403)
Q Consensus       269 ~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~  346 (403)
                      ..+|.+|+++|+++..+|  |.+|+|+|+..|++-++-+|+.+|++++.+|.+|+||||+|+..|....+..|++.|+++
T Consensus       125 ~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~  204 (600)
T KOG0509|consen  125 ISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASL  204 (600)
T ss_pred             HHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccc
Confidence            999999999999999988  569999999999999999999999999999999999999999999888899999999999


Q ss_pred             ccCC-CCCCCHHHHHHHcCCHHHHHHHHHccccccccccccccchhhhhh
Q 015680          347 FTKD-RWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAE  395 (403)
Q Consensus       347 ~~~~-~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  395 (403)
                      ..+| ..|+||||.|+..|+..++++|++.|++ .......+.+++++++
T Consensus       205 ~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~-~d~~~~~g~tp~~LA~  253 (600)
T KOG0509|consen  205 LLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD-LDKTNTNGKTPFDLAQ  253 (600)
T ss_pred             cccccccCCchHHHHHhcCCcceEehhhhcCCc-ccccccCCCCHHHHHH
Confidence            9888 8999999999999999999955555554 4433444677777774

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.98  E-value=6.7e-31  Score=256.99  Aligned_cols=190  Identities=21%  Similarity=0.293  Sum_probs=144.6

Q ss_pred             HhhhHHHhhccC------CHHHHHHHHHcCCCccccCCCCCcHHHHHHHc---CcHHHHHHHHhcCCCC-CcCCCCCCcH
Q 015680          190 LALRFNSAAYHG------DLYQLKGLIRAGADLNKTDYDGRSPLHLATSR---GYEDITLFLIQKGVDI-NIKDKFGNTP  259 (403)
Q Consensus       190 ~~~~l~~a~~~~------~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~-~~~~~~g~t~  259 (403)
                      +.||||.|+.++      ..+++++|+++|++++.++..|.||||.|+..   ++.+++++|+++|+++ +.+|..|+||
T Consensus        69 ~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tp  148 (494)
T PHA02989         69 IETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNL  148 (494)
T ss_pred             CCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCH
Confidence            356777666543      35677777777777777777777777766543   4667777777777777 6677777777


Q ss_pred             HHHHHHc--CChHHHHHHHHcCCCcccc---CCCchHHHHHHcC----CHHHHHHHHHCCCCC-----------------
Q 015680          260 LLEAIKC--GHDGVTSLLVKEGASLNVD---DAGSFLCIAVARG----DSDLLKRVLSNGVDP-----------------  313 (403)
Q Consensus       260 l~~A~~~--~~~~~v~~L~~~~~~~~~~---~~~~~l~~a~~~~----~~~~v~~Ll~~~~~~-----------------  313 (403)
                      ||+|+..  ++.+++++|+++|++++..   .|.||+|+|+..+    +.+++++|+++|+++                 
T Consensus       149 Lh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~  228 (494)
T PHA02989        149 LHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDN  228 (494)
T ss_pred             HHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHh
Confidence            7776643  4567777777777776652   3567777766554    667777777766654                 


Q ss_pred             ---------------------CCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHH
Q 015680          314 ---------------------NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL  372 (403)
Q Consensus       314 ---------------------~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~L  372 (403)
                                           +.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+.+|+.+++++|
T Consensus       229 ~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~L  308 (494)
T PHA02989        229 NKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRI  308 (494)
T ss_pred             chhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence                                 44566799999999999999999999999999999999999999999999999999999


Q ss_pred             HHccccc
Q 015680          373 EDAKCTQ  379 (403)
Q Consensus       373 l~~~~~~  379 (403)
                      ++.++..
T Consensus       309 L~~~p~~  315 (494)
T PHA02989        309 LQLKPGK  315 (494)
T ss_pred             HhcCCCh
Confidence            9988753

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=7.2e-31  Score=259.25  Aligned_cols=192  Identities=21%  Similarity=0.200  Sum_probs=165.0

Q ss_pred             hhhHhhhHHHhhcc--CCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCc--HHHHHHHHhcCCCCCcCCCCCCcHHHH
Q 015680          187 EAELALRFNSAAYH--GDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGY--EDITLFLIQKGVDINIKDKFGNTPLLE  262 (403)
Q Consensus       187 ~~~~~~~l~~a~~~--~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~--~~~~~~Ll~~~~~~~~~~~~g~t~l~~  262 (403)
                      +..|.||||+|+.+  ++.+++++|+++|++++..|..|.||||+|+..|+  .+++++|+++|+++|.+|..|+||||+
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~  253 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMT  253 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            56688999988644  67899999999999999999999999999999985  489999999999999999999999997


Q ss_pred             H-------------------------------------HHcCChHHHHHHHHcCCCccccC--CCchHHHHHH--cCCHH
Q 015680          263 A-------------------------------------IKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVA--RGDSD  301 (403)
Q Consensus       263 A-------------------------------------~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~--~~~~~  301 (403)
                      |                                     +..|+.+++++|+++|++++.++  |+||||+|+.  .++.+
T Consensus       254 Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~e  333 (764)
T PHA02716        254 YIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTD  333 (764)
T ss_pred             HHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCch
Confidence            5                                     34577888999999999888765  6799998765  45789


Q ss_pred             HHHHHHHCCCCCCCCCCCCChHHHHHHH--------------cCcHHHHHHHHHcCCCcccCCCCCCCHHHH----HHHc
Q 015680          302 LLKRVLSNGVDPNSRDYDHRTPLHVAAS--------------EGLYLMAKLLLEAGASVFTKDRWGNTPLDE----GRMC  363 (403)
Q Consensus       302 ~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~--------------~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~----A~~~  363 (403)
                      ++++|++.|++++.+|..|+||||+|+.              .++.+++++|+++|+|++.+|..|.||||.    |...
T Consensus       334 IVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~  413 (764)
T PHA02716        334 IIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNY  413 (764)
T ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhc
Confidence            9999999999999999999999998875              367899999999999999999999999983    3345


Q ss_pred             CCHHHHHHHHHcccc
Q 015680          364 GNKNLIKLLEDAKCT  378 (403)
Q Consensus       364 ~~~~~v~~Ll~~~~~  378 (403)
                      ++.+++++|++.|+.
T Consensus       414 ~~~dIvklLis~~~~  428 (764)
T PHA02716        414 MYYDIIDCLISDKVL  428 (764)
T ss_pred             ChHHHHHHHHhCcch
Confidence            788999999998764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=4e-30  Score=238.34  Aligned_cols=183  Identities=19%  Similarity=0.050  Sum_probs=168.8

Q ss_pred             HhhccCCHHHHHHHHHcCCCcc------ccCCCCCcHHHHHHH--cCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcC
Q 015680          196 SAAYHGDLYQLKGLIRAGADLN------KTDYDGRSPLHLATS--RGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  267 (403)
Q Consensus       196 ~a~~~~~~~~~~~ll~~~~~~~------~~~~~g~t~L~~A~~--~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~  267 (403)
                      +|+..+..++++.|+++|++++      ..+..++|+||.|+.  .|+.+++++|+++|++++..  .+.||+|.|+..|
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~  160 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKK  160 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcC
Confidence            7999999999999999999988      677889999999999  89999999999999999975  4589999999999


Q ss_pred             ChHHHHHHHHcCCCcc-cc-------CCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHH
Q 015680          268 HDGVTSLLVKEGASLN-VD-------DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL  339 (403)
Q Consensus       268 ~~~~v~~L~~~~~~~~-~~-------~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~L  339 (403)
                      +.+++++|+++|++.. ..       .+.+++|.|+..++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus       161 ~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelL  240 (437)
T PHA02795        161 ESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWL  240 (437)
T ss_pred             cHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999997432 21       255789999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCcccCCCCCCCHHHHHHHcCC--------HHHHHHHHHcccccc
Q 015680          340 LEAGASVFTKDRWGNTPLDEGRMCGN--------KNLIKLLEDAKCTQL  380 (403)
Q Consensus       340 l~~g~d~~~~~~~g~t~l~~A~~~~~--------~~~v~~Ll~~~~~~~  380 (403)
                      +++|++++.+|..|.||||+|+.+|+        .+++++|+++|++.-
T Consensus       241 L~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~  289 (437)
T PHA02795        241 LENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID  289 (437)
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999984        699999999999644

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.4e-30  Score=223.43  Aligned_cols=175  Identities=17%  Similarity=0.213  Sum_probs=157.0

Q ss_pred             hhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcC--cHHHHHHHHhcCCCCCcCC-CCCCcHHHHH
Q 015680          187 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG--YEDITLFLIQKGVDINIKD-KFGNTPLLEA  263 (403)
Q Consensus       187 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~A  263 (403)
                      ...+.+||+.|+..|+++.++.|++.   ++..+..|.||||+|+..+  +.+++++|++.|++++.++ ..|.||||+|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            34457899999999999999999975   4567888999999999854  8999999999999999997 4899999998


Q ss_pred             HHc---CChHHHHHHHHcCCCccccC--CCchHHHHHH--cCCHHHHHHHHHCCCCCCCCCCCCChHHHH-HHHcCcHHH
Q 015680          264 IKC---GHDGVTSLLVKEGASLNVDD--AGSFLCIAVA--RGDSDLLKRVLSNGVDPNSRDYDHRTPLHV-AASEGLYLM  335 (403)
Q Consensus       264 ~~~---~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~--~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~-A~~~~~~~~  335 (403)
                      +..   ++.+++++|+++|++++..+  |.||||+|+.  .++.+++++|++.|++++.+|..|.||||. |+..++.++
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~i  174 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKI  174 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHH
Confidence            864   46899999999999999876  7799999876  468999999999999999999999999996 566789999


Q ss_pred             HHHHHHcCCCcccCCCCCCCHHHHHHHcC
Q 015680          336 AKLLLEAGASVFTKDRWGNTPLDEGRMCG  364 (403)
Q Consensus       336 ~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~  364 (403)
                      +++|+++|++++.+|..|.||||+|+.++
T Consensus       175 v~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        175 FDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            99999999999999999999999999865

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=6.6e-30  Score=259.68  Aligned_cols=217  Identities=24%  Similarity=0.262  Sum_probs=183.0

Q ss_pred             hhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHH
Q 015680          163 LEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFL  242 (403)
Q Consensus       163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  242 (403)
                      ...+...+...+++.+.+.+  ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.+++++|
T Consensus       153 i~~~~~~i~k~Ll~~Gadvn--~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~L  230 (682)
T PHA02876        153 IQQDELLIAEMLLEGGADVN--AKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAI  230 (682)
T ss_pred             HHCCcHHHHHHHHhCCCCCC--CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            34444445555554444433  4466789999999999999999999999999999999999999999998888777665


Q ss_pred             Hh-----------------------------cCCCCCcCCCCCCcHHHHHHHcCCh-HHHHHHHHcCCCccccC--CCch
Q 015680          243 IQ-----------------------------KGVDINIKDKFGNTPLLEAIKCGHD-GVTSLLVKEGASLNVDD--AGSF  290 (403)
Q Consensus       243 l~-----------------------------~~~~~~~~~~~g~t~l~~A~~~~~~-~~v~~L~~~~~~~~~~~--~~~~  290 (403)
                      ++                             .|++++..|..|+||||+|+..|+. +++++|+++|++++..+  |.||
T Consensus       231 l~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~Tp  310 (682)
T PHA02876        231 IDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETP  310 (682)
T ss_pred             HhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            54                             4566777888899999999999885 58999999999888765  7799


Q ss_pred             HHHHHHcC-CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc-CcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHH
Q 015680          291 LCIAVARG-DSDLLKRVLSNGVDPNSRDYDHRTPLHVAASE-GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL  368 (403)
Q Consensus       291 l~~a~~~~-~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~-~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~  368 (403)
                      ||+|+..| +.++++.|+..|++++..|..|.||||+|+.. ++.+++++|++.|++++.+|..|.||||+|+.+|+.++
T Consensus       311 Lh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~i  390 (682)
T PHA02876        311 LYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVI  390 (682)
T ss_pred             HHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHH
Confidence            99999999 58999999999999999999999999999985 47889999999999999999999999999999999999


Q ss_pred             HHHHHHccccccc
Q 015680          369 IKLLEDAKCTQLS  381 (403)
Q Consensus       369 v~~Ll~~~~~~~~  381 (403)
                      +++|+++|++...
T Consensus       391 v~~Ll~~gad~~~  403 (682)
T PHA02876        391 INTLLDYGADIEA  403 (682)
T ss_pred             HHHHHHCCCCccc
Confidence            9999999987554

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=6.3e-30  Score=252.62  Aligned_cols=201  Identities=22%  Similarity=0.181  Sum_probs=174.6

Q ss_pred             ccCCHHHHHHHHHcC-CCcccc-CCCCCcHHHHHHHc--CcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCC--hHHH
Q 015680          199 YHGDLYQLKGLIRAG-ADLNKT-DYDGRSPLHLATSR--GYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH--DGVT  272 (403)
Q Consensus       199 ~~~~~~~~~~ll~~~-~~~~~~-~~~g~t~L~~A~~~--~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~--~~~v  272 (403)
                      ..++.+++++|+++| ++++.. +..|.||||.|+..  ++.+++++|+++|++++.+|..|.||||+|+..|+  .++|
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIV  230 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVI  230 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHH
Confidence            468999999999999 999988 88999999998754  67899999999999999999999999999999996  4899


Q ss_pred             HHHHHcCCCccccC--CCchHHHH-------------------------------------HHcCCHHHHHHHHHCCCCC
Q 015680          273 SLLVKEGASLNVDD--AGSFLCIA-------------------------------------VARGDSDLLKRVLSNGVDP  313 (403)
Q Consensus       273 ~~L~~~~~~~~~~~--~~~~l~~a-------------------------------------~~~~~~~~v~~Ll~~~~~~  313 (403)
                      ++|+++|++++.++  |.||||+|                                     +..|+.++++.|++.|+++
T Consensus       231 klLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI  310 (764)
T PHA02716        231 KKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL  310 (764)
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce
Confidence            99999999999865  77999865                                     4457889999999999999


Q ss_pred             CCCCCCCChHHHHHHHc--CcHHHHHHHHHcCCCcccCCCCCCCHHHHHHH--------------cCCHHHHHHHHHccc
Q 015680          314 NSRDYDHRTPLHVAASE--GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRM--------------CGNKNLIKLLEDAKC  377 (403)
Q Consensus       314 ~~~~~~g~t~Lh~A~~~--~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~--------------~~~~~~v~~Ll~~~~  377 (403)
                      +.+|..|+||||+|+..  ++.+++++|+++|++++.+|..|.||||+|+.              +++.+++++|+++|+
T Consensus       311 N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GA  390 (764)
T PHA02716        311 HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGA  390 (764)
T ss_pred             eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCC
Confidence            99999999999998754  57899999999999999999999999999875              378999999999999


Q ss_pred             ccccccccc------------ccchhhhhhhhcc
Q 015680          378 TQLSEFHYC------------SQGMIGIAENLLL  399 (403)
Q Consensus       378 ~~~~~~~~~------------~~~~~~~~~~l~~  399 (403)
                      +.-......            ..+..++++.|+.
T Consensus       391 DIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis  424 (764)
T PHA02716        391 DITAVNCLGYTPLTSYICTAQNYMYYDIIDCLIS  424 (764)
T ss_pred             CCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHh
Confidence            865433221            1234567777765

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1e-29  Score=258.22  Aligned_cols=200  Identities=25%  Similarity=0.314  Sum_probs=179.4

Q ss_pred             cCcchhhHhhhHHHhhccCCH-HHHHHHHHcCCCccccCCCCCcHHHHHHHcC-cHHHHHHHHhcCCCCCcCCCCCCcHH
Q 015680          183 IGKHEAELALRFNSAAYHGDL-YQLKGLIRAGADLNKTDYDGRSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPL  260 (403)
Q Consensus       183 ~~~~~~~~~~~l~~a~~~~~~-~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~g~t~l  260 (403)
                      .+..+..|.||||+|+..++. +++++|++.|++++..+..|.||||+|+..| ..+++++|++.|++++..|..|.|||
T Consensus       266 vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpL  345 (682)
T PHA02876        266 VNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPL  345 (682)
T ss_pred             CCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHH
Confidence            344556788999999999987 5889999999999999999999999999998 68999999999999999999999999


Q ss_pred             HHHHHcC-ChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCc-HHHH
Q 015680          261 LEAIKCG-HDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL-YLMA  336 (403)
Q Consensus       261 ~~A~~~~-~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~-~~~~  336 (403)
                      |+|+..+ +.++++.|+++|++++..+  |.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++ ..++
T Consensus       346 h~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~v  425 (682)
T PHA02876        346 HQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSV  425 (682)
T ss_pred             HHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHH
Confidence            9999854 6889999999999998766  7799999999999999999999999999999999999999998765 5678


Q ss_pred             HHHHHcCCCcccCCCCCCCHHHHHHHcC-CHHHHHHHHHcccccccc
Q 015680          337 KLLLEAGASVFTKDRWGNTPLDEGRMCG-NKNLIKLLEDAKCTQLSE  382 (403)
Q Consensus       337 ~~Ll~~g~d~~~~~~~g~t~l~~A~~~~-~~~~v~~Ll~~~~~~~~~  382 (403)
                      ++|+++|++++.+|..|.||||+|+..+ +.+++++|+++|++.-..
T Consensus       426 k~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~  472 (682)
T PHA02876        426 KTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAI  472 (682)
T ss_pred             HHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCC
Confidence            9999999999999999999999999876 689999999999986544

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=8.6e-30  Score=249.19  Aligned_cols=210  Identities=21%  Similarity=0.224  Sum_probs=175.1

Q ss_pred             hHhhhHHHhhcc--CCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcC------cHHHHHHHHhcCCCCCcCCCCCCcHH
Q 015680          189 ELALRFNSAAYH--GDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG------YEDITLFLIQKGVDINIKDKFGNTPL  260 (403)
Q Consensus       189 ~~~~~l~~a~~~--~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~------~~~~~~~Ll~~~~~~~~~~~~g~t~l  260 (403)
                      .+.++|+.++..  ++.+++++|+++|+++|.++ .+.||||.|+..+      +.+++++|+++|+++|.+|..|.|||
T Consensus        34 ~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL  112 (494)
T PHA02989         34 RGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPI  112 (494)
T ss_pred             CCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            355666554433  47999999999999999876 5799999998754      57899999999999999999999999


Q ss_pred             HHHHHc---CChHHHHHHHHcCCCc-ccc--CCCchHHHHHHc--CCHHHHHHHHHCCCCCCC-CCCCCChHHHHHHHcC
Q 015680          261 LEAIKC---GHDGVTSLLVKEGASL-NVD--DAGSFLCIAVAR--GDSDLLKRVLSNGVDPNS-RDYDHRTPLHVAASEG  331 (403)
Q Consensus       261 ~~A~~~---~~~~~v~~L~~~~~~~-~~~--~~~~~l~~a~~~--~~~~~v~~Ll~~~~~~~~-~~~~g~t~Lh~A~~~~  331 (403)
                      |.|+..   |+.+++++|+++|+++ +..  .|.||||+|+..  ++.+++++|+++|++++. .+..|.||||+|+..+
T Consensus       113 ~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~  192 (494)
T PHA02989        113 VCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRND  192 (494)
T ss_pred             HHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcc
Confidence            988765   5789999999999999 554  478999998765  589999999999999988 6789999999998765


Q ss_pred             ----cHHHHHHHHHcCCCccc--------------------------------------CCCCCCCHHHHHHHcCCHHHH
Q 015680          332 ----LYLMAKLLLEAGASVFT--------------------------------------KDRWGNTPLDEGRMCGNKNLI  369 (403)
Q Consensus       332 ----~~~~~~~Ll~~g~d~~~--------------------------------------~~~~g~t~l~~A~~~~~~~~v  369 (403)
                          +.+++++|+++|++++.                                      +|..|.||||+|+..|+.+++
T Consensus       193 ~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v  272 (494)
T PHA02989        193 IDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAF  272 (494)
T ss_pred             cccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHH
Confidence                89999999999887654                                      445699999999999999999


Q ss_pred             HHHHHccccccccccc--------cccchhhhhhhhcc
Q 015680          370 KLLEDAKCTQLSEFHY--------CSQGMIGIAENLLL  399 (403)
Q Consensus       370 ~~Ll~~~~~~~~~~~~--------~~~~~~~~~~~l~~  399 (403)
                      ++|+++|++.-.....        +..+..++++.||.
T Consensus       273 ~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~  310 (494)
T PHA02989        273 NYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQ  310 (494)
T ss_pred             HHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999986554332        34456667777664

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.2e-29  Score=245.96  Aligned_cols=205  Identities=22%  Similarity=0.231  Sum_probs=174.6

Q ss_pred             HHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHc-----CcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcC--
Q 015680          195 NSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSR-----GYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG--  267 (403)
Q Consensus       195 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~-----~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~--  267 (403)
                      +.+...++.+++++|+++|++++..+..|.||||.|+..     +..+++++|+++|+++|.+|..|+||||+|+.++  
T Consensus        43 yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~  122 (489)
T PHA02798         43 YLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYI  122 (489)
T ss_pred             HHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCc
Confidence            344555689999999999999999999999999999864     6789999999999999999999999999999986  


Q ss_pred             -ChHHHHHHHHcCCCccccC--CCchHHHHHHcCC---HHHHHHHHHCCCCCCCCC-CCCChHHHHHHHc----CcHHHH
Q 015680          268 -HDGVTSLLVKEGASLNVDD--AGSFLCIAVARGD---SDLLKRVLSNGVDPNSRD-YDHRTPLHVAASE----GLYLMA  336 (403)
Q Consensus       268 -~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~---~~~v~~Ll~~~~~~~~~~-~~g~t~Lh~A~~~----~~~~~~  336 (403)
                       +.+++++|+++|++++..+  |.||||+|+..++   .+++++|++.|++++..+ ..|.||||.++..    ++.+++
T Consensus       123 ~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~iv  202 (489)
T PHA02798        123 NNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADIL  202 (489)
T ss_pred             ChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHH
Confidence             6899999999999999876  6799999999998   999999999999999885 5789999998764    378899


Q ss_pred             HHHHHcCCCc---------------------------------------ccCCCCCCCHHHHHHHcCCHHHHHHHHHccc
Q 015680          337 KLLLEAGASV---------------------------------------FTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC  377 (403)
Q Consensus       337 ~~Ll~~g~d~---------------------------------------~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  377 (403)
                      ++|+++|+++                                       +.+|..|.||||+|+..|+.+++++|+++|+
T Consensus       203 k~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GA  282 (489)
T PHA02798        203 KLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGG  282 (489)
T ss_pred             HHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCC
Confidence            9998887644                                       4466789999999999999999999999999


Q ss_pred             cccccccc--------cccchhhhhhhhcc
Q 015680          378 TQLSEFHY--------CSQGMIGIAENLLL  399 (403)
Q Consensus       378 ~~~~~~~~--------~~~~~~~~~~~l~~  399 (403)
                      +.-.....        ...+..++++.||.
T Consensus       283 din~~d~~G~TpL~~A~~~~~~~iv~~lL~  312 (489)
T PHA02798        283 DINIITELGNTCLFTAFENESKFIFNSILN  312 (489)
T ss_pred             cccccCCCCCcHHHHHHHcCcHHHHHHHHc
Confidence            86544332        23334455555554

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=7.4e-30  Score=242.47  Aligned_cols=220  Identities=25%  Similarity=0.286  Sum_probs=186.8

Q ss_pred             HHHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHH-----cCCCccccCCCCCcHHHHHHH
Q 015680          158 VLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIR-----AGADLNKTDYDGRSPLHLATS  232 (403)
Q Consensus       158 ll~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-----~~~~~~~~~~~g~t~L~~A~~  232 (403)
                      .++.++..+..+.+..+++.+  ......+.++..|+|.|+..|..++.+.++.     .+..+|.-+..+.||||.|+.
T Consensus       157 pLh~A~~~~~~E~~k~Li~~~--a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve  234 (929)
T KOG0510|consen  157 PLHLAARKNKVEAKKELINKG--ADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVE  234 (929)
T ss_pred             hhhHHHhcChHHHHHHHHhcC--CCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhh
Confidence            344444444444333433333  2334556677888999999999999999998     456788889999999999999


Q ss_pred             cCcHHHHHHHHhcCCC---------------CCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHH
Q 015680          233 RGYEDITLFLIQKGVD---------------INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAV  295 (403)
Q Consensus       233 ~~~~~~~~~Ll~~~~~---------------~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~  295 (403)
                      .|++++++.+++.|..               +|..|++|.||||+||+.|+.+.++.|+..|++++.++  +.||||.|+
T Consensus       235 ~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA  314 (929)
T KOG0510|consen  235 GGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAA  314 (929)
T ss_pred             cCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHH
Confidence            9999999999997642               45568899999999999999999999999999998865  569999999


Q ss_pred             HcCCHHHHHHHHH-CCC-CCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcc---cCCCCCCCHHHHHHHcCCHHHHH
Q 015680          296 ARGDSDLLKRVLS-NGV-DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF---TKDRWGNTPLDEGRMCGNKNLIK  370 (403)
Q Consensus       296 ~~~~~~~v~~Ll~-~~~-~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~---~~~~~g~t~l~~A~~~~~~~~v~  370 (403)
                      ..|+.++++.|++ .|. ..+..|..|.||||+|+.+|+..+++.|+++|++..   ..|.+|+||||.|+..|+..+|+
T Consensus       315 ~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~  394 (929)
T KOG0510|consen  315 IYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQ  394 (929)
T ss_pred             HcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHH
Confidence            9999999999998 543 458889999999999999999999999999999986   45999999999999999999999


Q ss_pred             HHHHccccc
Q 015680          371 LLEDAKCTQ  379 (403)
Q Consensus       371 ~Ll~~~~~~  379 (403)
                      +|+.+|++.
T Consensus       395 ~Li~~Ga~I  403 (929)
T KOG0510|consen  395 KLISHGADI  403 (929)
T ss_pred             HHHHcCCce
Confidence            999999986

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=3.9e-29  Score=237.57  Aligned_cols=212  Identities=32%  Similarity=0.382  Sum_probs=161.6

Q ss_pred             hHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCC
Q 015680          189 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  268 (403)
Q Consensus       189 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~  268 (403)
                      ...+|+|+|+..|+.+.++.|++.|+|+|..|..+.||||.||..++.|..+.|++.|+++-..|.+|++|+|.|+++|.
T Consensus       120 ~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s  199 (929)
T KOG0510|consen  120 NKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGS  199 (929)
T ss_pred             hccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcc
Confidence            44667888888888888888888888888888888888888888888887788888888888888888888888888888


Q ss_pred             hHHHHHHHH-----cCCCcccc--CCCchHHHHHHcCCHHHHHHHHHCCCC---------------CCCCCCCCChHHHH
Q 015680          269 DGVTSLLVK-----EGASLNVD--DAGSFLCIAVARGDSDLLKRVLSNGVD---------------PNSRDYDHRTPLHV  326 (403)
Q Consensus       269 ~~~v~~L~~-----~~~~~~~~--~~~~~l~~a~~~~~~~~v~~Ll~~~~~---------------~~~~~~~g~t~Lh~  326 (403)
                      .++.+..+.     ++.+++..  .+.+|||.|+..|+.++++.+++.|..               ++..|.+|.||||+
T Consensus       200 ~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~  279 (929)
T KOG0510|consen  200 KECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHY  279 (929)
T ss_pred             hhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHH
Confidence            888887776     44555543  356888888888888888888877643               35567778888888


Q ss_pred             HHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-cccccccccc---------ccccchhhhhhh
Q 015680          327 AASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED-AKCTQLSEFH---------YCSQGMIGIAEN  396 (403)
Q Consensus       327 A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~~---------~~~~~~~~~~~~  396 (403)
                      |+..|++++++.|+..|++++.+++++.||||.|+..|+++.|+-|++ .+........         ..++|+..+++.
T Consensus       280 a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~ql  359 (929)
T KOG0510|consen  280 AARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQL  359 (929)
T ss_pred             HHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHH
Confidence            888888888888888888888888888888888888888888888877 3332222111         146777777777


Q ss_pred             hccc
Q 015680          397 LLLL  400 (403)
Q Consensus       397 l~~~  400 (403)
                      ||+-
T Consensus       360 Ll~~  363 (929)
T KOG0510|consen  360 LLNK  363 (929)
T ss_pred             HHhc
Confidence            7754

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=1.4e-29  Score=226.96  Aligned_cols=190  Identities=26%  Similarity=0.382  Sum_probs=173.0

Q ss_pred             hhhHhhhHHHhhccCCHHHHHHHHHc-CCCcccc--------CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCC
Q 015680          187 EAELALRFNSAAYHGDLYQLKGLIRA-GADLNKT--------DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGN  257 (403)
Q Consensus       187 ~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~--------~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~  257 (403)
                      ..+|.|||..|+.+|+.+++++|+++ ++++...        .-+|-+||-.|+..|++++|+.|++.|+++|.......
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNS  118 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNS  118 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCC
Confidence            44567999999999999999999994 4554322        34577899889999999999999999999999888889


Q ss_pred             cHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHH
Q 015680          258 TPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLM  335 (403)
Q Consensus       258 t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~  335 (403)
                      |||-.||.-|+.++||+|+++|+|++..+  |.|-||+||..|+.+|+++|++.|+++|..+..|+|+||.|++.|++++
T Consensus       119 tPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdi  198 (615)
T KOG0508|consen  119 TPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDI  198 (615)
T ss_pred             ccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHH
Confidence            99999999999999999999999999876  6788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccc
Q 015680          336 AKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC  377 (403)
Q Consensus       336 ~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  377 (403)
                      +++|+++|+.+. +|..|.|||..|+..|+.++|++|++...
T Consensus       199 vq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~~~~~  239 (615)
T KOG0508|consen  199 VQLLLKHGAKID-VDGHGMTPLLLAAVTGHTDIVERLLQCET  239 (615)
T ss_pred             HHHHHhCCceee-ecCCCCchHHHHhhhcchHHHHHHhcCCc
Confidence            999999999884 66779999999999999999999997444

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=5.3e-28  Score=240.35  Aligned_cols=192  Identities=18%  Similarity=0.117  Sum_probs=163.4

Q ss_pred             cchhhHhhhHHHhhcc---CCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHH----HHHHHHhcCCCCCcCCCCCC
Q 015680          185 KHEAELALRFNSAAYH---GDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYED----ITLFLIQKGVDINIKDKFGN  257 (403)
Q Consensus       185 ~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~  257 (403)
                      ..+..|.||||+|+..   |+.+++++|++.|++++..+..|+||||.|+..|+.+    +++.|++.+...+..+  ..
T Consensus        27 ~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~--~~  104 (661)
T PHA02917         27 TRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIND--FN  104 (661)
T ss_pred             ccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCC--cc
Confidence            4467789999997555   8899999999999999999999999999999999854    5678887654444433  34


Q ss_pred             cHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHH--HcCCHHHHHHHHHCCCCCCCCCC---CC----------
Q 015680          258 TPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAV--ARGDSDLLKRVLSNGVDPNSRDY---DH----------  320 (403)
Q Consensus       258 t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~--~~~~~~~v~~Ll~~~~~~~~~~~---~g----------  320 (403)
                      +++++|+.+|+.++|++|+++|++++.++  |.||||+++  ..|+.+++++|+++|++++..|.   .|          
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~  184 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRN  184 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccc
Confidence            77888999999999999999999999865  789999654  57899999999999999986553   23          


Q ss_pred             -ChHHHHHHH-----------cCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCH--HHHHHHHHccccc
Q 015680          321 -RTPLHVAAS-----------EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK--NLIKLLEDAKCTQ  379 (403)
Q Consensus       321 -~t~Lh~A~~-----------~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~--~~v~~Ll~~~~~~  379 (403)
                       .||||+|+.           .++.+++++|+++|+|++.+|.+|.||||+|+.+|+.  ++|++|++ |++.
T Consensus       185 ~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~  256 (661)
T PHA02917        185 CGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDN  256 (661)
T ss_pred             cccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcc
Confidence             599999986           4589999999999999999999999999999999985  79999985 6643

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=1.5e-28  Score=220.23  Aligned_cols=204  Identities=28%  Similarity=0.359  Sum_probs=172.9

Q ss_pred             HhhccCCHHHHHHHHHcCCC-----ccccCCCCCcHHHHHHHcCcHHHHHHHHh-cCCCCCcC--------CCCCCcHHH
Q 015680          196 SAAYHGDLYQLKGLIRAGAD-----LNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIK--------DKFGNTPLL  261 (403)
Q Consensus       196 ~a~~~~~~~~~~~ll~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~--------~~~g~t~l~  261 (403)
                      .|+..|....+..|+...-+     +-.....|.|||-+|+++|+.++|+||++ .++++...        ...|-+||+
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLW   89 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLW   89 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhh
Confidence            56777777777777754322     11234678899999999999999999999 45554332        346889999


Q ss_pred             HHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHH
Q 015680          262 EAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL  339 (403)
Q Consensus       262 ~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~L  339 (403)
                      .|+..|+.++|+.|+++|+++|...  +.|||.-||.-|+.+++++|+++|+|++..|..|+|.||+||..|+.+|+++|
T Consensus        90 aAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyL  169 (615)
T KOG0508|consen   90 AASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYL  169 (615)
T ss_pred             HHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHH
Confidence            9999999999999999999998754  56999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccc-------cccccccchhhhhhhhcc
Q 015680          340 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS-------EFHYCSQGMIGIAENLLL  399 (403)
Q Consensus       340 l~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~-------~~~~~~~~~~~~~~~l~~  399 (403)
                      ++.|+|+|.++.+|+|+||.|+..|+.|++++|+.+|+.-..       .......|+.++++.|+.
T Consensus       170 le~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  170 LEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhc
Confidence            999999999999999999999999999999999999884221       112256778888888875

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.4e-27  Score=204.72  Aligned_cols=173  Identities=18%  Similarity=0.184  Sum_probs=151.9

Q ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcC--ChHHHHHHHHcCCCccccC---CCchHHH
Q 015680          219 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG--HDGVTSLLVKEGASLNVDD---AGSFLCI  293 (403)
Q Consensus       219 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~--~~~~v~~L~~~~~~~~~~~---~~~~l~~  293 (403)
                      ....+.||||.|++.|+.++|+.|++.   ++..|..|.||||+|+..+  +.+++++|+++|++++..+   |.||||+
T Consensus        17 ~~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~   93 (209)
T PHA02859         17 LFYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHH   93 (209)
T ss_pred             HhhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHH
Confidence            346678999999999999999999975   5667889999999999865  7999999999999999763   6799999


Q ss_pred             HHHc---CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH--cCcHHHHHHHHHcCCCcccCCCCCCCHHHH-HHHcCCHH
Q 015680          294 AVAR---GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS--EGLYLMAKLLLEAGASVFTKDRWGNTPLDE-GRMCGNKN  367 (403)
Q Consensus       294 a~~~---~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~--~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~-A~~~~~~~  367 (403)
                      |+..   ++.+++++|+++|++++.+|..|.||||+|+.  .++.+++++|+++|++++.+|..|.||||. |+..++.+
T Consensus        94 a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~  173 (209)
T PHA02859         94 YLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKK  173 (209)
T ss_pred             HHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHH
Confidence            8864   47999999999999999999999999999986  468999999999999999999999999996 56788999


Q ss_pred             HHHHHHHccccccccccccccchhhhhh
Q 015680          368 LIKLLEDAKCTQLSEFHYCSQGMIGIAE  395 (403)
Q Consensus       368 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  395 (403)
                      ++++|+++|++.-... ..+.++++++.
T Consensus       174 iv~~Ll~~Gadi~~~d-~~g~tpl~la~  200 (209)
T PHA02859        174 IFDFLTSLGIDINETN-KSGYNCYDLIK  200 (209)
T ss_pred             HHHHHHHcCCCCCCCC-CCCCCHHHHHh
Confidence            9999999999876554 45677777664

>PHA02730 ankyrin-like protein; Provisional

Probab=99.95  E-value=1e-26  Score=225.65  Aligned_cols=190  Identities=14%  Similarity=0.135  Sum_probs=163.0

Q ss_pred             cchhhHhhhHHHhhccC---CHHHHHHHHHcCCCccccCCCCCcHHHHHHHcC--cHHHHHHHHhcCC--CCCcCCCCCC
Q 015680          185 KHEAELALRFNSAAYHG---DLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG--YEDITLFLIQKGV--DINIKDKFGN  257 (403)
Q Consensus       185 ~~~~~~~~~l~~a~~~~---~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~--~~~~~~~~g~  257 (403)
                      ..+..|.||||+|+..|   +.+++++|+++|++++.+|..|+||||+|+..+  +.+++++|++.|+  +++..+.-+.
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d  115 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIND  115 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCC
Confidence            44667899999999997   599999999999999999999999999999977  7999999999965  5577888899


Q ss_pred             cHHHHHHH--cCChHHHHHHHH-cCCCcccc-------CCCchHHHHHHcCCHHHHHHHHHCCCCCC-------CCCCCC
Q 015680          258 TPLLEAIK--CGHDGVTSLLVK-EGASLNVD-------DAGSFLCIAVARGDSDLLKRVLSNGVDPN-------SRDYDH  320 (403)
Q Consensus       258 t~l~~A~~--~~~~~~v~~L~~-~~~~~~~~-------~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~-------~~~~~g  320 (403)
                      +|||.++.  +++.+++++|++ .+.+++..       .+-+|++++...++.++|++|+++|++++       ..+..+
T Consensus       116 ~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~  195 (672)
T PHA02730        116 FDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDR  195 (672)
T ss_pred             chHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCc
Confidence            99999998  888999999997 56776654       35689999999999999999999999995       133334


Q ss_pred             C-hHHHHHH------HcCcHHHHHHHHHcCCCcccCCCCCCCHHHH--HHHcCCHHHHHHHHH
Q 015680          321 R-TPLHVAA------SEGLYLMAKLLLEAGASVFTKDRWGNTPLDE--GRMCGNKNLIKLLED  374 (403)
Q Consensus       321 ~-t~Lh~A~------~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~--A~~~~~~~~v~~Ll~  374 (403)
                      . |.||+++      .+++.+++++|+++|+|++.+|..|.||||+  |...++.|+|++|++
T Consensus       196 c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        196 CKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             cchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            4 5566444      4568999999999999999999999999995  555677999999999

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.5e-26  Score=228.36  Aligned_cols=197  Identities=21%  Similarity=0.216  Sum_probs=165.4

Q ss_pred             HHHHHHHHHcCCCccccCCCCCcHHHHHHHc---CcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChH----HHHHH
Q 015680          203 LYQLKGLIRAGADLNKTDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG----VTSLL  275 (403)
Q Consensus       203 ~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~----~v~~L  275 (403)
                      ++.++.|+.++..++..|..|+||||+|+..   |+.+++++|++.|++++..+..|+||||+|+..|+.+    +++.|
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~L   91 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMAL   91 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHH
Confidence            5778999998888888899999999998665   7899999999999999999999999999999999854    56788


Q ss_pred             HHcCCCccccCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHH--HcCcHHHHHHHHHcCCCcccCCCC-
Q 015680          276 VKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA--SEGLYLMAKLLLEAGASVFTKDRW-  352 (403)
Q Consensus       276 ~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~--~~~~~~~~~~Ll~~g~d~~~~~~~-  352 (403)
                      ++++...+..+...++++|+..++.+++++|+++|++++..|.+|.||||.|+  ..|+.+++++|+++|++++..|.+ 
T Consensus        92 l~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~  171 (661)
T PHA02917         92 LEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDD  171 (661)
T ss_pred             HhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccc
Confidence            88755456666667789999999999999999999999999999999999654  568999999999999999866543 


Q ss_pred             --C-----------CCHHHHHHH-----------cCCHHHHHHHHHccccccccccc--------cccch--hhhhhhhc
Q 015680          353 --G-----------NTPLDEGRM-----------CGNKNLIKLLEDAKCTQLSEFHY--------CSQGM--IGIAENLL  398 (403)
Q Consensus       353 --g-----------~t~l~~A~~-----------~~~~~~v~~Ll~~~~~~~~~~~~--------~~~~~--~~~~~~l~  398 (403)
                        |           .||||+|+.           +++.+++++|+++|++.-.....        +..+.  .++++.|+
T Consensus       172 ~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li  251 (661)
T PHA02917        172 EYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLM  251 (661)
T ss_pred             ccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHH
Confidence              3           599999986           56899999999999976544322        33344  36888875


Q ss_pred             c
Q 015680          399 L  399 (403)
Q Consensus       399 ~  399 (403)
                      .
T Consensus       252 ~  252 (661)
T PHA02917        252 K  252 (661)
T ss_pred             h
Confidence            4

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.94  E-value=4.8e-27  Score=236.54  Aligned_cols=211  Identities=33%  Similarity=0.371  Sum_probs=143.7

Q ss_pred             hhhHhhhHHHhhccC-CHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHH
Q 015680          187 EAELALRFNSAAYHG-DLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  265 (403)
Q Consensus       187 ~~~~~~~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~  265 (403)
                      +..|.|++|.|+..| ..+....++..+.+++....+|.||||+|++.|+.++++.|++.++..+...+.+.+++|.|+.
T Consensus       437 ~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~  516 (1143)
T KOG4177|consen  437 AKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAAD  516 (1143)
T ss_pred             hhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhh
Confidence            333455555555555 4455555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcC
Q 015680          266 CGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG  343 (403)
Q Consensus       266 ~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g  343 (403)
                      .+...+++.++++|++++..+  +.||||.|+..|+..+|++|+++|++++.++..|+||||.||..|+.+|+.+|+++|
T Consensus       517 ~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~G  596 (1143)
T KOG4177|consen  517 EDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHG  596 (1143)
T ss_pred             hhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcC
Confidence            555555666666666666554  458888888888888888888888888888888888888888888888888888888


Q ss_pred             CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccc----cccccccccchhhhhhhh
Q 015680          344 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ----LSEFHYCSQGMIGIAENL  397 (403)
Q Consensus       344 ~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~----~~~~~~~~~~~~~~~~~l  397 (403)
                      +++|..|.+|.|||++|+..|+.++++.|+..+.++    .....+....+.++.+.+
T Consensus       597 A~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e~~  654 (1143)
T KOG4177|consen  597 ASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVAEEL  654 (1143)
T ss_pred             CCCCcccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhhHHHHh
Confidence            888888888888888888888888888888888873    112234445555555443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.94  E-value=2.4e-26  Score=231.49  Aligned_cols=237  Identities=29%  Similarity=0.328  Sum_probs=205.1

Q ss_pred             HHHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcC-cH
Q 015680          158 VLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG-YE  236 (403)
Q Consensus       158 ll~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~-~~  236 (403)
                      .++.+...+........+.....  .+.....+.||||.|+..++..+++.+++.|++++..+..|+||+|+|+..| ..
T Consensus       377 pl~la~~~g~~~~v~Lll~~ga~--~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~  454 (1143)
T KOG4177|consen  377 PLHLAVKSGRVSVVELLLEAGAD--PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYL  454 (1143)
T ss_pred             chhhhcccCchhHHHhhhhccCC--cccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHh
Confidence            34444444444444444444444  5566778899999999999999999999999999999999999999999999 88


Q ss_pred             HHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCcc--ccCCCchHHHHHHcCCHHHHHHHHHCCCCCC
Q 015680          237 DITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN--VDDAGSFLCIAVARGDSDLLKRVLSNGVDPN  314 (403)
Q Consensus       237 ~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~--~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~  314 (403)
                      ++...+++.|.++|.....|.||||+|+..|+.+++..+++.++..+  ...+-+++|++...+...++..++++|++++
T Consensus       455 ~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~  534 (1143)
T KOG4177|consen  455 QIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVD  534 (1143)
T ss_pred             hhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCcee
Confidence            99999999999999999999999999999999999999999985444  3456799999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccccccccccchhhhh
Q 015680          315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIA  394 (403)
Q Consensus       315 ~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  394 (403)
                      .++..|.||||.||..|+.++|++|+++|+|++.+++.|+||||.|+..|+.+|+.+|+++|+++-... ....+++-++
T Consensus       535 ~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d-~~g~TpL~iA  613 (1143)
T KOG4177|consen  535 LRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAAD-LDGFTPLHIA  613 (1143)
T ss_pred             hhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCccc-ccCcchhHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999766554 4445544444


Q ss_pred             hhh
Q 015680          395 ENL  397 (403)
Q Consensus       395 ~~l  397 (403)
                      -.+
T Consensus       614 ~~l  616 (1143)
T KOG4177|consen  614 VRL  616 (1143)
T ss_pred             HHh
Confidence            433

>PHA02730 ankyrin-like protein; Provisional

Probab=99.94  E-value=5.2e-25  Score=213.90  Aligned_cols=186  Identities=16%  Similarity=0.111  Sum_probs=139.2

Q ss_pred             hccCCHHHHHHHHHcCCCccccCCCCCcHHHH--HHHcCcHHHHHHHHh-------------------------------
Q 015680          198 AYHGDLYQLKGLIRAGADLNKTDYDGRSPLHL--ATSRGYEDITLFLIQ-------------------------------  244 (403)
Q Consensus       198 ~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~--A~~~~~~~~~~~Ll~-------------------------------  244 (403)
                      ..+++.++++.|+++|+++|.+|..|+||||+  |...|+.|++++|++                               
T Consensus       210 ~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (672)
T PHA02730        210 SESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVT  289 (672)
T ss_pred             hhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcc
Confidence            56678889999999999999888899999985  445567888888888                               


Q ss_pred             -cCCCCCc--------------------CCCCCCc---------------------HHHHHHHcC---ChHHHHHHHHcC
Q 015680          245 -KGVDINI--------------------KDKFGNT---------------------PLLEAIKCG---HDGVTSLLVKEG  279 (403)
Q Consensus       245 -~~~~~~~--------------------~~~~g~t---------------------~l~~A~~~~---~~~~v~~L~~~~  279 (403)
                       +|+|...                    .+..|.+                     .||.=..++   +.+++++|+++|
T Consensus       290 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~G  369 (672)
T PHA02730        290 PYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNG  369 (672)
T ss_pred             cCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCC
Confidence             5666544                    3444533                     444444444   578888888888


Q ss_pred             CCccccC-CCchHHHHHHcCC----HHHHHHHHHCCC--CCCCCCCCCChHHHH---HHHcC---------cHHHHHHHH
Q 015680          280 ASLNVDD-AGSFLCIAVARGD----SDLLKRVLSNGV--DPNSRDYDHRTPLHV---AASEG---------LYLMAKLLL  340 (403)
Q Consensus       280 ~~~~~~~-~~~~l~~a~~~~~----~~~v~~Ll~~~~--~~~~~~~~g~t~Lh~---A~~~~---------~~~~~~~Ll  340 (403)
                      ++++..+ |.||||+|+..++    .+++++|+++|+  +++..|..|.||||.   |...+         ..+++++|+
T Consensus       370 AdIN~k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LI  449 (672)
T PHA02730        370 ATMDKTTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILS  449 (672)
T ss_pred             CCCCcCCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHH
Confidence            8887643 6688888887774    788888888887  577788888888883   33222         235688888


Q ss_pred             HcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccccc
Q 015680          341 EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF  383 (403)
Q Consensus       341 ~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~  383 (403)
                      .+|+|++.+|..|.||||+|+..++.+++++|+++|++.-...
T Consensus       450 s~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d  492 (672)
T PHA02730        450 KYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTS  492 (672)
T ss_pred             hcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCC
Confidence            8888888888888888888888888888888888888755444

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=4.1e-26  Score=185.36  Aligned_cols=221  Identities=25%  Similarity=0.291  Sum_probs=188.1

Q ss_pred             hHHHHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCc
Q 015680          156 RKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGY  235 (403)
Q Consensus       156 ~~ll~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~  235 (403)
                      ........+....++......-+++-.. .++.+|...++.++-+++.+.+...+..|...|..+-.+++|+.+++-+-+
T Consensus        63 e~~~~~~~~s~nsd~~v~s~~~~~~~~~-~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~  141 (296)
T KOG0502|consen   63 ESLLTVAVRSGNSDVAVQSAQLDPDAID-ETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLH  141 (296)
T ss_pred             CcccchhhhcCCcHHHHHhhccCCCCCC-CCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHH
Confidence            3333333444444444433333333333 344558889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCC
Q 015680          236 EDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDP  313 (403)
Q Consensus       236 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~  313 (403)
                      ++.+..+.++  -+|..|+.|.|||.||+..|+.++|++|++.|++++...  ..++|++|+..|.+++|++|+..+.++
T Consensus       142 L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdV  219 (296)
T KOG0502|consen  142 LDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDV  219 (296)
T ss_pred             HHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCc
Confidence            8888777665  588999999999999999999999999999999999755  458999999999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcccccc
Q 015680          314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQL  380 (403)
Q Consensus       314 ~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~  380 (403)
                      |..|.+|.|||-+|+..|+.+|++.|+..|+|++.-+..|+++++.|+..|+. +|+..+++.+...
T Consensus       220 NvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl  285 (296)
T KOG0502|consen  220 NVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKL  285 (296)
T ss_pred             ceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998 8888877766533

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=2.1e-25  Score=207.02  Aligned_cols=192  Identities=16%  Similarity=0.113  Sum_probs=167.2

Q ss_pred             HHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCC------cCCCCCCcHHHHHHH--cCChHHHHHHH
Q 015680          205 QLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN------IKDKFGNTPLLEAIK--CGHDGVTSLLV  276 (403)
Q Consensus       205 ~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~------~~~~~g~t~l~~A~~--~~~~~~v~~L~  276 (403)
                      ..++++++|+++|.....+     +|+..+.-+++++|+++|++++      .++..++|+||+|+.  .|+.++|++|+
T Consensus        64 ~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI  138 (437)
T PHA02795         64 LYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV  138 (437)
T ss_pred             HHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH
Confidence            3578999999998776665     9999999999999999999988      788899999999999  88999999999


Q ss_pred             HcCCCccccCCCchHHHHHHcCCHHHHHHHHHCCCCC-CCC-----CCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCC
Q 015680          277 KEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDP-NSR-----DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD  350 (403)
Q Consensus       277 ~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~-~~~-----~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~  350 (403)
                      ++|++++..++.||+|+|+..++.+++++|+.+|++. +..     +..|.||+|.|...++.+++++|+++|+|++.+|
T Consensus       139 ~~GADIn~~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD  218 (437)
T PHA02795        139 DHGAVIYKIECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLD  218 (437)
T ss_pred             HCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCC
Confidence            9999999988899999999999999999999999853 222     1347899999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHccccccccccc--------ccc--------chhhhhhhhcccc
Q 015680          351 RWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHY--------CSQ--------GMIGIAENLLLLP  401 (403)
Q Consensus       351 ~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~--------~~~--------~~~~~~~~l~~~~  401 (403)
                      ..|.||||+|+.+|+.+++++|+++|++.-.....        ...        ++.++++.|+.-+
T Consensus       219 ~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~g  285 (437)
T PHA02795        219 AGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREP  285 (437)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCC
Confidence            99999999999999999999999999975543322        111        2457888777543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=5.1e-25  Score=227.03  Aligned_cols=193  Identities=21%  Similarity=0.170  Sum_probs=165.9

Q ss_pred             CCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCC
Q 015680          201 GDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGA  280 (403)
Q Consensus       201 ~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~  280 (403)
                      .+.++-..+.+.+...  .+..+.++||.|+..|+.++++.|++.|+++|..|..|+||||+|+..|+.+++++|+++|+
T Consensus       505 ~~l~v~~ll~~~~~~~--~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga  582 (823)
T PLN03192        505 HDLNVGDLLGDNGGEH--DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHAC  582 (823)
T ss_pred             ccccHHHHHhhccccc--CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCC
Confidence            4444445454444332  34456799999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHH
Q 015680          281 SLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD  358 (403)
Q Consensus       281 ~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~  358 (403)
                      +++..|  |.||||+|+..|+.+++++|++.++..+.  ..|.++||.|+..|+.+++++|+++|+|++.+|.+|.||||
T Consensus       583 din~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh  660 (823)
T PLN03192        583 NVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQ  660 (823)
T ss_pred             CCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            998865  78999999999999999999988765543  45789999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHccccccccccccccchhhhhhhh
Q 015680          359 EGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAENL  397 (403)
Q Consensus       359 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~l  397 (403)
                      +|+.+|+.+++++|+++|++.-........++.++.+.+
T Consensus       661 ~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        661 VAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             HHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHH
Confidence            999999999999999999987766555545566655543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.93  E-value=2e-24  Score=207.68  Aligned_cols=212  Identities=14%  Similarity=0.063  Sum_probs=170.1

Q ss_pred             chhhhhcccceeeecCcchhhHhhhHHHhhc-cCCHHHHHHHHHcCCCc-------------------------------
Q 015680          169 NLRLKQVESDITFHIGKHEAELALRFNSAAY-HGDLYQLKGLIRAGADL-------------------------------  216 (403)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~-~~~~~~~~~ll~~~~~~-------------------------------  216 (403)
                      ++...++....+.+  ..+..+.+++++|+. .++.|++++|+++|+++                               
T Consensus        86 Elvk~LI~~GAdvN--~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  163 (631)
T PHA02792         86 ELLKLLISKGLEIN--SIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYD  163 (631)
T ss_pred             HHHHHHHHcCCCcc--cccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccc
Confidence            44444554444333  344457789999965 69999999999999763                               


Q ss_pred             -----cccCCCCCcHHHHHHHcC-------cHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcC--ChHHHHHHHHcCC--
Q 015680          217 -----NKTDYDGRSPLHLATSRG-------YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG--HDGVTSLLVKEGA--  280 (403)
Q Consensus       217 -----~~~~~~g~t~L~~A~~~~-------~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~--~~~~v~~L~~~~~--  280 (403)
                           |..+..|.||||+|+..+       +.++++.|+++|++++..|..|.||||+|+.+.  +.++++.|++...  
T Consensus       164 ~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~  243 (631)
T PHA02792        164 YDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSG  243 (631)
T ss_pred             cccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccc
Confidence                 133556899999999999       899999999999999999999999999999988  6778887765211  


Q ss_pred             --------------------Ccc---------------------------------------------------------
Q 015680          281 --------------------SLN---------------------------------------------------------  283 (403)
Q Consensus       281 --------------------~~~---------------------------------------------------------  283 (403)
                                          +++                                                         
T Consensus       244 ~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~iei  323 (631)
T PHA02792        244 NELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINV  323 (631)
T ss_pred             cchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHH
Confidence                                000                                                         


Q ss_pred             ------------ccCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC--ChHHHHHHHcCcH---HHHHHHHHcCCCc
Q 015680          284 ------------VDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDH--RTPLHVAASEGLY---LMAKLLLEAGASV  346 (403)
Q Consensus       284 ------------~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g--~t~Lh~A~~~~~~---~~~~~Ll~~g~d~  346 (403)
                                  .......++.|+..|+.+++++|+++|++++..|.+|  .||||+|+..+..   +++++|+++|+|+
T Consensus       324 IK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADI  403 (631)
T PHA02792        324 IKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDI  403 (631)
T ss_pred             HHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcc
Confidence                        0001124777899999999999999999999988775  6999998877664   4688899999999


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcccccccc
Q 015680          347 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE  382 (403)
Q Consensus       347 ~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~  382 (403)
                      +.+|..|.||||+|+.+++.+++++|+++|++.-..
T Consensus       404 N~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~k  439 (631)
T PHA02792        404 NKIDKHGRSILYYCIESHSVSLVEWLIDNGADINIT  439 (631)
T ss_pred             ccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            999999999999999999999999999999986544

>PHA02792 ankyrin-like protein; Provisional

Probab=99.92  E-value=2.9e-24  Score=206.55  Aligned_cols=203  Identities=14%  Similarity=0.096  Sum_probs=168.8

Q ss_pred             ccceeeecCcchhhHhhhHHHhhccC-------CHHHHHHHHHcCCCccccCCCCCcHHHHHHHcC--cHHHHHHHHhc-
Q 015680          176 ESDITFHIGKHEAELALRFNSAAYHG-------DLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG--YEDITLFLIQK-  245 (403)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~l~~a~~~~-------~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~-  245 (403)
                      +-+++...+-.+..|.||||+|+.++       +.++++.|+++|++++..|..|.||||+|+...  ..|++++|++. 
T Consensus       161 ~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~  240 (631)
T PHA02792        161 DYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSN  240 (631)
T ss_pred             ccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhcc
Confidence            34455555556677899999999999       899999999999999999999999999999888  66677766642 


Q ss_pred             --------------------------------------------------------------------------------
Q 015680          246 --------------------------------------------------------------------------------  245 (403)
Q Consensus       246 --------------------------------------------------------------------------------  245 (403)
                                                                                                      
T Consensus       241 ~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~  320 (631)
T PHA02792        241 YSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVY  320 (631)
T ss_pred             ccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCcc
Confidence                                                                                            


Q ss_pred             ----------CCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccCC----CchHHHHHHcCCH---HHHHHHHH
Q 015680          246 ----------GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA----GSFLCIAVARGDS---DLLKRVLS  308 (403)
Q Consensus       246 ----------~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~----~~~l~~a~~~~~~---~~v~~Ll~  308 (403)
                                |++..  ...+..+++.||..|+.++|++|+++|++++.++.    .||||+|+..+..   +++++|++
T Consensus       321 ieiIK~LId~Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs  398 (631)
T PHA02792        321 INVIKCMIDEGATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKP  398 (631)
T ss_pred             HHHHHHHHHCCCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh
Confidence                      22221  11245568899999999999999999999998763    3889998777765   46888999


Q ss_pred             CCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHH----------cCCHHHHHHHHHcccc
Q 015680          309 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRM----------CGNKNLIKLLEDAKCT  378 (403)
Q Consensus       309 ~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~----------~~~~~~v~~Ll~~~~~  378 (403)
                      +|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+.          ....++++.|+++|++
T Consensus       399 ~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~  478 (631)
T PHA02792        399 YIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPT  478 (631)
T ss_pred             cCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999999999999986          2235779999999987


Q ss_pred             cc
Q 015680          379 QL  380 (403)
Q Consensus       379 ~~  380 (403)
                      ..
T Consensus       479 i~  480 (631)
T PHA02792        479 IE  480 (631)
T ss_pred             hh
Confidence            53

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=1.4e-24  Score=222.63  Aligned_cols=193  Identities=21%  Similarity=0.134  Sum_probs=157.7

Q ss_pred             eeecCcchhhHhhhHH-HhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcC---cHHHHHHHHhcCCC------C
Q 015680          180 TFHIGKHEAELALRFN-SAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG---YEDITLFLIQKGVD------I  249 (403)
Q Consensus       180 ~~~~~~~~~~~~~~l~-~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~---~~~~~~~Ll~~~~~------~  249 (403)
                      ..+.+..+..|.|||| .|+.+++.++++.|++.|.    .+..|.||||.|+..+   ...++.++...+.+      .
T Consensus        42 ~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~  117 (743)
T TIGR00870        42 KLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELA  117 (743)
T ss_pred             ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhh
Confidence            4445566788999999 9999999999999999886    5778999999999722   22344555444422      1


Q ss_pred             C----cCCCCCCcHHHHHHHcCChHHHHHHHHcCCCcccc----------------CCCchHHHHHHcCCHHHHHHHHHC
Q 015680          250 N----IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD----------------DAGSFLCIAVARGDSDLLKRVLSN  309 (403)
Q Consensus       250 ~----~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~----------------~~~~~l~~a~~~~~~~~v~~Ll~~  309 (403)
                      +    ..+..|.||||+||..|+.++|++|+++|++++..                .|.+|||+|+..|+.+++++|++.
T Consensus       118 ~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~  197 (743)
T TIGR00870       118 NDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSED  197 (743)
T ss_pred             ccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcC
Confidence            1    12346999999999999999999999999999854                367899999999999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHHcC---------cHHHHHHHHHcCCCc-------ccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 015680          310 GVDPNSRDYDHRTPLHVAASEG---------LYLMAKLLLEAGASV-------FTKDRWGNTPLDEGRMCGNKNLIKLLE  373 (403)
Q Consensus       310 ~~~~~~~~~~g~t~Lh~A~~~~---------~~~~~~~Ll~~g~d~-------~~~~~~g~t~l~~A~~~~~~~~v~~Ll  373 (403)
                      |++++..|..|+||||+|+..+         ...+.++++..++..       +..|.+|.||||+|+..|+.+++++|+
T Consensus       198 gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL  277 (743)
T TIGR00870       198 PADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKL  277 (743)
T ss_pred             CcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHH
Confidence            9999999999999999999987         234566666654443       667999999999999999999999999


Q ss_pred             Hcc
Q 015680          374 DAK  376 (403)
Q Consensus       374 ~~~  376 (403)
                      +.+
T Consensus       278 ~~~  280 (743)
T TIGR00870       278 AIK  280 (743)
T ss_pred             HHH
Confidence            954

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=2.5e-24  Score=203.56  Aligned_cols=211  Identities=25%  Similarity=0.272  Sum_probs=186.2

Q ss_pred             ecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHH
Q 015680          182 HIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL  261 (403)
Q Consensus       182 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~  261 (403)
                      ..+-.+..+.|.||+|+.+|+.++++.|++..+-++..+..|.+|||+|++.|+.+++++++.++..+|..+..|.||||
T Consensus        41 s~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplh  120 (854)
T KOG0507|consen   41 SHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLH  120 (854)
T ss_pred             cccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccc
Confidence            34445668999999999999999999999999888889999999999999999999999999999889999999999999


Q ss_pred             HHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCC--------CCCCCCCChHHHHHHHcC
Q 015680          262 EAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDP--------NSRDYDHRTPLHVAASEG  331 (403)
Q Consensus       262 ~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~--------~~~~~~g~t~Lh~A~~~~  331 (403)
                      .|+.+|+.+++.+|+++|+++-..+  +.|++-+|+..|+.++++.|+.....+        ..++..+.+|||+|+.+|
T Consensus       121 laaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakng  200 (854)
T KOG0507|consen  121 LAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNG  200 (854)
T ss_pred             hhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcc
Confidence            9999999999999999999988776  459999999999999999999774322        334566899999999999


Q ss_pred             cHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccccccccccchhhhh
Q 015680          332 LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIA  394 (403)
Q Consensus       332 ~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  394 (403)
                      ++++++.|++.|.|+|....+| |+||.|+..|..++|.+|++.|...-....++ ++.++++
T Consensus       201 h~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~-qtaldil  261 (854)
T KOG0507|consen  201 HVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHG-QTALDII  261 (854)
T ss_pred             hHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccc-hHHHHHH
Confidence            9999999999999998776655 79999999999999999999999877766555 4444443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=9.8e-24  Score=216.30  Aligned_cols=208  Identities=23%  Similarity=0.200  Sum_probs=168.2

Q ss_pred             hhHhhhHHHhhccCCHHHHHHHHHc--CCCccccCCCCCcHHH-HHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHH
Q 015680          188 AELALRFNSAAYHGDLYQLKGLIRA--GADLNKTDYDGRSPLH-LATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  264 (403)
Q Consensus       188 ~~~~~~l~~a~~~~~~~~~~~ll~~--~~~~~~~~~~g~t~L~-~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~  264 (403)
                      .+....|+.|+..|+.+.++.+++.  +.++|..|..|+|||| .|+..++.+++++|++.|+    .+..|.||||.|+
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~   90 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAIS   90 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHH
Confidence            3556789999999999999999998  8899999999999999 8888899999999999987    6778999999999


Q ss_pred             HcCC---hHHHHHHHHcCCC------cc------ccCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCC------------
Q 015680          265 KCGH---DGVTSLLVKEGAS------LN------VDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRD------------  317 (403)
Q Consensus       265 ~~~~---~~~v~~L~~~~~~------~~------~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~------------  317 (403)
                      ..+.   ..++..+...+.+      .+      ...|.||||+|+..|+.++++.|+++|++++..+            
T Consensus        91 ~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~  170 (743)
T TIGR00870        91 LEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVD  170 (743)
T ss_pred             hccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCC
Confidence            7332   2344444444322      11      1347899999999999999999999999998653            


Q ss_pred             --CCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcC---------CHHHHHHHHHcccccccc----
Q 015680          318 --YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG---------NKNLIKLLEDAKCTQLSE----  382 (403)
Q Consensus       318 --~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~---------~~~~v~~Ll~~~~~~~~~----  382 (403)
                        ..|.||||.|+..|+.+++++|+++|+|++.+|..|+||||+|+..+         ...+.+++++.++..-..    
T Consensus       171 ~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~  250 (743)
T TIGR00870       171 SFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELE  250 (743)
T ss_pred             cccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhh
Confidence              35899999999999999999999999999999999999999999997         345667777765542111    


Q ss_pred             -----------ccccccchhhhhhhhcc
Q 015680          383 -----------FHYCSQGMIGIAENLLL  399 (403)
Q Consensus       383 -----------~~~~~~~~~~~~~~l~~  399 (403)
                                 ...+..+..++++.|+.
T Consensus       251 ~i~N~~g~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       251 VILNHQGLTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             hhcCCCCCCchhhhhhcCCccHHHHHHH
Confidence                       12245667777777775

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=6.5e-24  Score=194.26  Aligned_cols=202  Identities=31%  Similarity=0.424  Sum_probs=171.2

Q ss_pred             hHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHH
Q 015680          193 RFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT  272 (403)
Q Consensus       193 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v  272 (403)
                      .+.-||..|+.+-+..|+..|++++..+.+|.|+||-+|...+.+||++|+++|+++|..|..|+||+|.|+..|+..++
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~  122 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIV  122 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCccccC--CCchHHHH------------HHc-C--------C------HHHHHHHHHCCCCCCCCCCCCChH
Q 015680          273 SLLVKEGASLNVDD--AGSFLCIA------------VAR-G--------D------SDLLKRVLSNGVDPNSRDYDHRTP  323 (403)
Q Consensus       273 ~~L~~~~~~~~~~~--~~~~l~~a------------~~~-~--------~------~~~v~~Ll~~~~~~~~~~~~g~t~  323 (403)
                      ++|+.+|+++...+  ++.|+.++            ... |        .      -++-.+| ..|...+..+..|.|.
T Consensus       123 ~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l-~~G~~~d~~~~rG~T~  201 (527)
T KOG0505|consen  123 EYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWL-NAGAELDARHARGATA  201 (527)
T ss_pred             HHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHH-hccccccccccccchH
Confidence            99999999877654  33331111            111 1        0      0222333 3677788888779999


Q ss_pred             HHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccccccccccchhhhhhh
Q 015680          324 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAEN  396 (403)
Q Consensus       324 Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~  396 (403)
                      ||+|+.+|+.++.++|+..|.+++.+|.+|.||||.|+.+|+.++++.|+++|++--... ..++++++++..
T Consensus       202 lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t-~~g~~p~dv~de  273 (527)
T KOG0505|consen  202 LHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKT-KMGETPLDVADE  273 (527)
T ss_pred             HHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhh-hcCCCCccchhh
Confidence            999999999999999999999999999999999999999999999999999999755543 555677666544

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=2.3e-23  Score=173.25  Aligned_cols=142  Identities=20%  Similarity=0.235  Sum_probs=91.9

Q ss_pred             cCCCccccCCCCCcHHHHHHHcCcH----HHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHH---HHHHHHcCCCccc
Q 015680          212 AGADLNKTDYDGRSPLHLATSRGYE----DITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV---TSLLVKEGASLNV  284 (403)
Q Consensus       212 ~~~~~~~~~~~g~t~L~~A~~~~~~----~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~---v~~L~~~~~~~~~  284 (403)
                      ++++++..+..+.++||.||+.|++    +++++|.+.|++++.+|..|+||||+|+..|+.+.   +++|+++|++++.
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            3456666777788888888888887    56667777888888888888888888888877544   5566666655554


Q ss_pred             cC---CCchHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCC
Q 015680          285 DD---AGSFLCIAVARGDSDLLKRVLS-NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWG  353 (403)
Q Consensus       285 ~~---~~~~l~~a~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g  353 (403)
                      .+   |.||||+|+..++.+++++|+. .|++++.+|..|.||||+|+..++.+++++|+++|++++.++..|
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  161 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIG  161 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCC
Confidence            32   3455555555555555555553 455555555555555555555555555555555555555555444

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=8.4e-24  Score=184.23  Aligned_cols=174  Identities=28%  Similarity=0.392  Sum_probs=152.7

Q ss_pred             CHHHHHHHHHc----CCC-----ccccCCCCCcHHHHHHHcCcHHHHHHHHhcC-CCCCcCCCCCCcHHHHHHHcC----
Q 015680          202 DLYQLKGLIRA----GAD-----LNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKFGNTPLLEAIKCG----  267 (403)
Q Consensus       202 ~~~~~~~ll~~----~~~-----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~A~~~~----  267 (403)
                      +.+.|+..+..    ++.     +|..|..|.|+||||+..+++++|+.||+.| ++++.++..|.||+++|+...    
T Consensus       238 ~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~  317 (452)
T KOG0514|consen  238 DPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQP  317 (452)
T ss_pred             CHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcch
Confidence            66666665542    233     6778999999999999999999999999988 789999999999999998643    


Q ss_pred             -ChHHHHHHHHcCCCcccc---CCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHH-c
Q 015680          268 -HDGVTSLLVKEGASLNVD---DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE-A  342 (403)
Q Consensus       268 -~~~~v~~L~~~~~~~~~~---~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~-~  342 (403)
                       +..+|..|.+.| ++|.+   -|.|+|++|+.+|+.++|+.|+..|+|+|.+|.+|-|+|++||..|+.+++++|+. .
T Consensus       318 ~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p  396 (452)
T KOG0514|consen  318 ADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVP  396 (452)
T ss_pred             hhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccC
Confidence             466888887774 45543   38899999999999999999999999999999999999999999999999999987 5


Q ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcc
Q 015680          343 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK  376 (403)
Q Consensus       343 g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  376 (403)
                      ++|...+|.+|.|+|.+|-..||.||..+|-.+.
T Consensus       397 ~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~  430 (452)
T KOG0514|consen  397 SCDISLTDVDGSTALSIALEAGHREIAVMLYAHM  430 (452)
T ss_pred             cccceeecCCCchhhhhHHhcCchHHHHHHHHHH
Confidence            8999999999999999999999999999887663

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=4e-24  Score=173.88  Aligned_cols=197  Identities=21%  Similarity=0.184  Sum_probs=175.3

Q ss_pred             HhhccCCHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHH
Q 015680          196 SAAYHGDLYQLKGLIRAGAD-LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSL  274 (403)
Q Consensus       196 ~a~~~~~~~~~~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~  274 (403)
                      .+...|+.+++...+.-.++ ++-.+..|++++|.|+-.++...++.++.+|+..|..+-.+++|+.+++...+.+++..
T Consensus        68 ~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~  147 (296)
T KOG0502|consen   68 VAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDL  147 (296)
T ss_pred             hhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHH
Confidence            46677888887776665544 44567789999999999999999999999999999999999999999999999999988


Q ss_pred             HHHcCCCccccCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCC
Q 015680          275 LVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN  354 (403)
Q Consensus       275 L~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~  354 (403)
                      +.+...+--...|.|||.||+.+|++.+|++|++.|++++...+...|+|.+|+..|++++|++|+.++.|+|..|-+|-
T Consensus       148 ~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGg  227 (296)
T KOG0502|consen  148 LVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGG  227 (296)
T ss_pred             HhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCC
Confidence            88876666666788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHcCCHHHHHHHHHccccccccccccccchhhh
Q 015680          355 TPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGI  393 (403)
Q Consensus       355 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  393 (403)
                      |||-+|++-|+.+||+.|+..|++...+.... +.+++.
T Consensus       228 TpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsG-y~~mdl  265 (296)
T KOG0502|consen  228 TPLLYAVRGNHVKCVESLLNSGADVTQEDDSG-YWIMDL  265 (296)
T ss_pred             ceeeeeecCChHHHHHHHHhcCCCcccccccC-CcHHHH
Confidence            99999999999999999999999988776543 444443

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=1.4e-22  Score=169.34  Aligned_cols=134  Identities=18%  Similarity=0.249  Sum_probs=103.9

Q ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHh------cCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccCCCchH
Q 015680          218 KTDYDGRSPLHLATSRGYEDITLFLIQ------KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFL  291 (403)
Q Consensus       218 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~------~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~l  291 (403)
                      ..+..|.||||+|+..|+.++++.|+.      .|++++.+|..|+||||+|+..|+.+++                   
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~-------------------   76 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLA-------------------   76 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHH-------------------
Confidence            456778888888888888888887753      2466777777788888888777764332                   


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCC-CCChHHHHHHHcCcHHHHHHHHH-cCCCcccCCCCCCCHHHHHHHcCCHHHH
Q 015680          292 CIAVARGDSDLLKRVLSNGVDPNSRDY-DHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKNLI  369 (403)
Q Consensus       292 ~~a~~~~~~~~v~~Ll~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~~~~Ll~-~g~d~~~~~~~g~t~l~~A~~~~~~~~v  369 (403)
                              .+++++|++.|++++.++. .|+||||+|+..++.+++++|+. .|++++.+|..|.||||+|+..++.+++
T Consensus        77 --------~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv  148 (169)
T PHA02741         77 --------AEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMM  148 (169)
T ss_pred             --------HHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHH
Confidence                    3566677777778877774 78888888888888888888887 5888888888888888888888888888


Q ss_pred             HHHHHcccc
Q 015680          370 KLLEDAKCT  378 (403)
Q Consensus       370 ~~Ll~~~~~  378 (403)
                      ++|++.++.
T Consensus       149 ~~L~~~~~~  157 (169)
T PHA02741        149 QILREIVAT  157 (169)
T ss_pred             HHHHHHHHH
Confidence            888887765

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.89  E-value=1.4e-22  Score=168.56  Aligned_cols=140  Identities=16%  Similarity=0.187  Sum_probs=124.5

Q ss_pred             cCCCCCcCCCCCCcHHHHHHHcCCh----HHHHHHHHcCCCccccC--CCchHHHHHHcCCHH---HHHHHHHCCCCCCC
Q 015680          245 KGVDINIKDKFGNTPLLEAIKCGHD----GVTSLLVKEGASLNVDD--AGSFLCIAVARGDSD---LLKRVLSNGVDPNS  315 (403)
Q Consensus       245 ~~~~~~~~~~~g~t~l~~A~~~~~~----~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~---~v~~Ll~~~~~~~~  315 (403)
                      ++++++..+..+.+++|.||+.|+.    +++++|.+.+..++..+  |.||||+|+..|+.+   ++++|++.|++++.
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            4667777888899999999999997    56778888888877654  789999999999865   48999999999999


Q ss_pred             CC-CCCChHHHHHHHcCcHHHHHHHHH-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccc
Q 015680          316 RD-YDHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFH  384 (403)
Q Consensus       316 ~~-~~g~t~Lh~A~~~~~~~~~~~Ll~-~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~  384 (403)
                      +| ..|+||||+|+..|+.+++++|+. .|++++.+|..|.||||+|+..++.+++++|+++|++.-.+..
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~  159 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLS  159 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccc
Confidence            98 589999999999999999999995 8999999999999999999999999999999999998665543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.8e-21  Score=174.19  Aligned_cols=153  Identities=24%  Similarity=0.235  Sum_probs=130.0

Q ss_pred             ccCCCCCc-HHHHHHHcCcHHHHHHHHhcCCCCCcCC----CCCCcHHHHHHHcCChHHHHHHHHcCCCcccc---CCCc
Q 015680          218 KTDYDGRS-PLHLATSRGYEDITLFLIQKGVDINIKD----KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD---DAGS  289 (403)
Q Consensus       218 ~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~~~~~~~~~----~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~---~~~~  289 (403)
                      ..|..+.| +||.|+..|+.+++++|+++|++++.++    ..|.||||+|+..|+.+++++|+++|++++..   .|.|
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T  106 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT  106 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence            35666665 5677777789999999999999999874    58999999999999999999999999999974   3679


Q ss_pred             hHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHH
Q 015680          290 FLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI  369 (403)
Q Consensus       290 ~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v  369 (403)
                      |||+|+..|+.+++++|+..|++++.+|..|.||||+|+..++.+++..+.  |.   ..+..+.+|++++   ++.+++
T Consensus       107 pLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~---~n~ei~  178 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DN---EISNFYKHPKKIL---INFDIL  178 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CC---cccccccChhhhh---ccHHHH
Confidence            999999999999999999999999999999999999999988888876554  32   2456777888875   478999


Q ss_pred             HHHHHcccc
Q 015680          370 KLLEDAKCT  378 (403)
Q Consensus       370 ~~Ll~~~~~  378 (403)
                      ++|++|+.-
T Consensus       179 ~~Lish~vl  187 (300)
T PHA02884        179 KILVSHFIL  187 (300)
T ss_pred             HHHHHHHHH
Confidence            999999883

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.87  E-value=3.2e-22  Score=183.19  Aligned_cols=189  Identities=31%  Similarity=0.390  Sum_probs=157.6

Q ss_pred             CcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHH
Q 015680          184 GKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  263 (403)
Q Consensus       184 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A  263 (403)
                      ...+.+|.|+||.+|...+.+||+++++.|+++|..|..++||||.|+..|+..++.+|+++|+++...+..|+.|+.++
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~  146 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLA  146 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccc
Confidence            34567889999999999999999999999999999999999999999999999999999999998877777777775443


Q ss_pred             HHcCChH--------------------------HHHHHHHcCCCccc--cCCCchHHHHHHcCCHHHHHHHHHCCCCCCC
Q 015680          264 IKCGHDG--------------------------VTSLLVKEGASLNV--DDAGSFLCIAVARGDSDLLKRVLSNGVDPNS  315 (403)
Q Consensus       264 ~~~~~~~--------------------------~v~~L~~~~~~~~~--~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~  315 (403)
                      ...-...                          -+...+..|...+.  ..|.|.+|+|+..|..++.++|++.|.+++.
T Consensus       147 e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~  226 (527)
T KOG0505|consen  147 EDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNI  226 (527)
T ss_pred             cCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccc
Confidence            2211111                          12233335554443  2378999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 015680          316 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE  373 (403)
Q Consensus       316 ~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  373 (403)
                      .|.+||||||.|+..|..+++++|+.+|++.+..+..|.||+++|..--- ..+++..
T Consensus       227 ~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee~~-~l~eLe~  283 (527)
T KOG0505|consen  227 KDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEEEL-YLLELEL  283 (527)
T ss_pred             ccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhhhH-HHHHHHH
Confidence            99999999999999999999999999999999999999999999876433 3333333

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=2.8e-21  Score=172.89  Aligned_cols=148  Identities=21%  Similarity=0.192  Sum_probs=124.4

Q ss_pred             cCCCCCCc-HHHHHHHcCChHHHHHHHHcCCCcccc------CCCchHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCh
Q 015680          251 IKDKFGNT-PLLEAIKCGHDGVTSLLVKEGASLNVD------DAGSFLCIAVARGDSDLLKRVLSNGVDPNSR-DYDHRT  322 (403)
Q Consensus       251 ~~~~~g~t-~l~~A~~~~~~~~v~~L~~~~~~~~~~------~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~-~~~g~t  322 (403)
                      .+|..++| +||.|+..|+.+++++|+++|++++..      .|.||||+|+..++.+++++|+++|++++.. +..|.|
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T  106 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT  106 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence            45666664 667777889999999999999999975      5789999999999999999999999999986 467999


Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccccccccccchhhhhhhhc
Q 015680          323 PLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAENLL  398 (403)
Q Consensus       323 ~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~  398 (403)
                      |||+|+..|+.+++++|+.+|++++.+|..|.||||+|+..++.+++..+...+.++....+....+..++++.|+
T Consensus       107 pLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ei~~~Li  182 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDNEISNFYKHPKKILINFDILKILV  182 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCcccccccChhhhhccHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999887776555444433333233456666554

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=1.9e-21  Score=160.22  Aligned_cols=94  Identities=19%  Similarity=0.215  Sum_probs=77.2

Q ss_pred             CCCchHHHHHHcCCH---HHHHHHHHCCCCCCCCC-CCCChHHHHHHHcCcHHHHHHHHH-cCCCcccCCCCCCCHHHHH
Q 015680          286 DAGSFLCIAVARGDS---DLLKRVLSNGVDPNSRD-YDHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEG  360 (403)
Q Consensus       286 ~~~~~l~~a~~~~~~---~~v~~Ll~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~~~~Ll~-~g~d~~~~~~~g~t~l~~A  360 (403)
                      +|.||||+|+..|+.   +++++|++.|++++.++ ..|+||||+|+..|+.+++++|+. .|++++.+|..|.||||+|
T Consensus        54 ~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A  133 (154)
T PHA02736         54 HGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVA  133 (154)
T ss_pred             CCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHH
Confidence            355666666666655   45778888888888887 489999999999999999999987 4889988999999999999


Q ss_pred             HHcCCHHHHHHHHHccccc
Q 015680          361 RMCGNKNLIKLLEDAKCTQ  379 (403)
Q Consensus       361 ~~~~~~~~v~~Ll~~~~~~  379 (403)
                      +..|+.+++++|+++|++.
T Consensus       134 ~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736        134 CERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             HHcCCHHHHHHHHHcCCCC
Confidence            9999999999999888763

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.86  E-value=1.2e-21  Score=185.72  Aligned_cols=215  Identities=23%  Similarity=0.298  Sum_probs=177.6

Q ss_pred             hHHHHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCc
Q 015680          156 RKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGY  235 (403)
Q Consensus       156 ~~ll~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~  235 (403)
                      ...++.+.-++...+...+++.+..+.+..  ..+.+|||+|+.+|+.++++.++.++..+|..+..|.||||.|++.|+
T Consensus        50 fTalhha~Lng~~~is~llle~ea~ldl~d--~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh  127 (854)
T KOG0507|consen   50 FTLLHHAVLNGQNQISKLLLDYEALLDLCD--TKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGH  127 (854)
T ss_pred             hhHHHHHHhcCchHHHHHHhcchhhhhhhh--ccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcc
Confidence            334444444444444444444444444433  678899999999999999999999998899999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCcccc----------CCCchHHHHHHcCCHHHHHH
Q 015680          236 EDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD----------DAGSFLCIAVARGDSDLLKR  305 (403)
Q Consensus       236 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~----------~~~~~l~~a~~~~~~~~v~~  305 (403)
                      .+++.+|+++|+++-.+|+.+.|++-+|++.|+.++++.|++....+...          .+-+|+|+|+.+|+.++++.
T Consensus       128 ~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~  207 (854)
T KOG0507|consen  128 LEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQA  207 (854)
T ss_pred             hHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHH
Confidence            99999999999999999999999999999999999999999874332221          12367999999999999999


Q ss_pred             HHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcC---CHHHHHHHH
Q 015680          306 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG---NKNLIKLLE  373 (403)
Q Consensus       306 Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~---~~~~v~~Ll  373 (403)
                      |++.|.++|.....| |+||-|+..|..++|.+|++.|.+...+|.+|+|+|++-....   ..+++-++.
T Consensus       208 ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~~~~ei~ga~~  277 (854)
T KOG0507|consen  208 LLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQENRRYEIAGAVK  277 (854)
T ss_pred             HHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcchhhhhhhhhhhh
Confidence            999999999987664 8999999999999999999999999999999999999877644   334444444

>PHA02741 hypothetical protein; Provisional

Probab=99.85  E-value=1.3e-20  Score=157.40  Aligned_cols=131  Identities=26%  Similarity=0.308  Sum_probs=104.8

Q ss_pred             cchhhHhhhHHHhhccCCHHHHHHHHH------cCCCccccCCCCCcHHHHHHHcCc----HHHHHHHHhcCCCCCcCCC
Q 015680          185 KHEAELALRFNSAAYHGDLYQLKGLIR------AGADLNKTDYDGRSPLHLATSRGY----EDITLFLIQKGVDINIKDK  254 (403)
Q Consensus       185 ~~~~~~~~~l~~a~~~~~~~~~~~ll~------~~~~~~~~~~~g~t~L~~A~~~~~----~~~~~~Ll~~~~~~~~~~~  254 (403)
                      ..+..+.++||+|+..|+.++++.|+.      .|++++.+|..|+||||+|+..|+    .+++++|++.|++++.++.
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~   95 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEM   95 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCc
Confidence            345678899999999999999999864      357899999999999999999998    5889999999999999885


Q ss_pred             -CCCcHHHHHHHcCChHHHHHHHHcCCCccccCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcH
Q 015680          255 -FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLY  333 (403)
Q Consensus       255 -~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~  333 (403)
                       .|+||||+|+..++.+++++|++.                              .|++++..|.+|+||||+|+..++.
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~------------------------------~g~~~~~~n~~g~tpL~~A~~~~~~  145 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQ------------------------------PGIDLHFCNADNKSPFELAIDNEDV  145 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhC------------------------------CCCCCCcCCCCCCCHHHHHHHCCCH
Confidence             899999999998888888777653                              2344555566677777777777777


Q ss_pred             HHHHHHHHcCCC
Q 015680          334 LMAKLLLEAGAS  345 (403)
Q Consensus       334 ~~~~~Ll~~g~d  345 (403)
                      +++++|+++++.
T Consensus       146 ~iv~~L~~~~~~  157 (169)
T PHA02741        146 AMMQILREIVAT  157 (169)
T ss_pred             HHHHHHHHHHHH
Confidence            777777665543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=4.6e-21  Score=167.24  Aligned_cols=159  Identities=24%  Similarity=0.364  Sum_probs=141.4

Q ss_pred             cCcchhhHhhhHHHhhccCCHHHHHHHHHcC-CCccccCCCCCcHHHHHHHc-----CcHHHHHHHHhcCCCCCcCC-CC
Q 015680          183 IGKHEAELALRFNSAAYHGDLYQLKGLIRAG-ADLNKTDYDGRSPLHLATSR-----GYEDITLFLIQKGVDINIKD-KF  255 (403)
Q Consensus       183 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~g~t~L~~A~~~-----~~~~~~~~Ll~~~~~~~~~~-~~  255 (403)
                      ++--|..|.|+|||++.++|+++|+.||+.| .++|.++.-|+||+++|+..     .+.++|..|.+.| |+|.+- ..
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence            4455778899999999999999999999998 67999999999999998863     4667888888765 787664 46


Q ss_pred             CCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCc
Q 015680          256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSN-GVDPNSRDYDHRTPLHVAASEGL  332 (403)
Q Consensus       256 g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~Lh~A~~~~~  332 (403)
                      |+|+|++|+.+|+.++|+.|+..|+++|..|  |.|+|+.|+.+||.|++++|+.. +++....|.+|-|+|.+|-..|+
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence            9999999999999999999999999999865  78999999999999999999965 68899999999999999999999


Q ss_pred             HHHHHHHHHc
Q 015680          333 YLMAKLLLEA  342 (403)
Q Consensus       333 ~~~~~~Ll~~  342 (403)
                      .+|.-+|..+
T Consensus       420 ~eIa~mlYa~  429 (452)
T KOG0514|consen  420 REIAVMLYAH  429 (452)
T ss_pred             hHHHHHHHHH
Confidence            9999888754

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=1.1e-20  Score=155.76  Aligned_cols=129  Identities=24%  Similarity=0.243  Sum_probs=105.4

Q ss_pred             cccCCCCCcHHHHHHHcCcHHHHHHHHhcCC--C-----CCcCCCCCCcHHHHHHHcCCh---HHHHHHHHcCCCcccc-
Q 015680          217 NKTDYDGRSPLHLATSRGYEDITLFLIQKGV--D-----INIKDKFGNTPLLEAIKCGHD---GVTSLLVKEGASLNVD-  285 (403)
Q Consensus       217 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~--~-----~~~~~~~g~t~l~~A~~~~~~---~~v~~L~~~~~~~~~~-  285 (403)
                      +..|..|.||||+|+..|+.  +.++...+.  +     ++.+|..|.||||+|+..|+.   +++++|+++|++++.. 
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~   88 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKE   88 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccC
Confidence            45677899999999999873  333332221  1     334678899999999998876   4688899999988875 


Q ss_pred             --CCCchHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcc
Q 015680          286 --DAGSFLCIAVARGDSDLLKRVLS-NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF  347 (403)
Q Consensus       286 --~~~~~l~~a~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~  347 (403)
                        +|.||||+|+..|+.+++++|+. .|++++.+|..|.||||+|+..|+.+++++|+++|++.+
T Consensus        89 ~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         89 RVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence              36799999999999999999997 589999999999999999999999999999999998764

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.83  E-value=6.5e-21  Score=185.93  Aligned_cols=244  Identities=31%  Similarity=0.471  Sum_probs=176.5

Q ss_pred             ccccceeeeeeeecChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEE
Q 015680           12 GRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLE   91 (403)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~   91 (403)
                      .-.||+++|+.||..++.+|+++++.++++++|+|++++++.+++++.+++...|+|||+|++|||+++.+|||.+|.++
T Consensus       393 ~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le  472 (727)
T KOG0498|consen  393 RGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLE  472 (727)
T ss_pred             cCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEE
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCeeEeeeecCCCccc-ccccccC-CCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHH---hhhcc
Q 015680           92 EVGVGEDGSEETVSQLQPNSSFG-EVSILCN-IPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTN---LLEGK  166 (403)
Q Consensus        92 ~~~~~~~g~~~~~~~~~~G~~~g-~~~ll~~-~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~---ll~~~  166 (403)
                      +...+ +|.+.....+++||+|| |+..... .|...+++|.+.|+++++..+++..+++.++..+..+++.   +...+
T Consensus       473 ~~~~~-~g~~~~~~~L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~  551 (727)
T KOG0498|consen  473 SITTD-GGGFFVVAILGPGDFFGEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHL  551 (727)
T ss_pred             EEEcc-CCceEEEEEecCCCccchHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhh
Confidence            98744 55778899999999999 7776655 7889999999999999999999999999999999888884   33332


Q ss_pred             ccchhhhhcccceeeecCcc-hhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhc
Q 015680          167 ESNLRLKQVESDITFHIGKH-EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQK  245 (403)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  245 (403)
                      -..-....+.....-+...+ ..+.....-.+...++..-....+..+...+..+..|.+++|.++..|...+...+++.
T Consensus       552 ~r~~aa~~iq~a~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  631 (727)
T KOG0498|consen  552 WRTWAACFIQAAWRRHIKRKGEEELALEEEESAIRGDDRGSKSLLRAGILASRFAANGRPPLHTAASRGSSDCALLLLQK  631 (727)
T ss_pred             hhhhhhhhHHHHHHHHHHhhccchhhhhcchhhhccccccchhhhhcccccccccccCCCccccccccCccccccccCCC
Confidence            22211111111100000000 00000000011111111112223334444555566677777777777777777777777


Q ss_pred             CCCCCcCCCCC
Q 015680          246 GVDINIKDKFG  256 (403)
Q Consensus       246 ~~~~~~~~~~g  256 (403)
                      .++++..+..+
T Consensus       632 ~~~p~f~~~~~  642 (727)
T KOG0498|consen  632 PADPDFSDAEG  642 (727)
T ss_pred             CCCCCcccccc
Confidence            77777665444

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.83  E-value=1.5e-20  Score=159.26  Aligned_cols=118  Identities=33%  Similarity=0.482  Sum_probs=102.4

Q ss_pred             hcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Q 015680          244 QKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHR  321 (403)
Q Consensus       244 ~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~  321 (403)
                      +...|.|..|..|.+|||+||+.|+..+++.|+.+|+.+|..+  ..||||+|+.+|+.++|+.|++..+++|..+..|+
T Consensus        22 ~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgn  101 (448)
T KOG0195|consen   22 DTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGN  101 (448)
T ss_pred             CcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCC
Confidence            3456788888888888888888888888888888888888766  34888888888888999999988899999999999


Q ss_pred             hHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHH
Q 015680          322 TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR  361 (403)
Q Consensus       322 t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~  361 (403)
                      |||||||..|+..+++-|+.+|+-++.-|++|.|||+-|.
T Consensus       102 tplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  102 TPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             CchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            9999999999999999999999999999999999998764

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.82  E-value=2.6e-19  Score=140.60  Aligned_cols=143  Identities=29%  Similarity=0.300  Sum_probs=91.6

Q ss_pred             hHHHhhccCCHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHH
Q 015680          193 RFNSAAYHGDLYQLKGLIRAGAD-LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  271 (403)
Q Consensus       193 ~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~  271 (403)
                      .+.+|+..+.+..|+.||+..++ +|.+|..|+||||-|+.+|++++++.|+..|++++.+...|+||||-||..++   
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN---  142 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNN---  142 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccc---
Confidence            35566666666666666666555 56666666666666666666666666666666666666666666666655554   


Q ss_pred             HHHHHHcCCCccccCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCc-HHHHHHHHH-cCCCcccC
Q 015680          272 TSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL-YLMAKLLLE-AGASVFTK  349 (403)
Q Consensus       272 v~~L~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~-~~~~~~Ll~-~g~d~~~~  349 (403)
                                                  .+++..|+++|+++|.......||||+||...+ ...+.+|+. .+.++-.+
T Consensus       143 ----------------------------~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~  194 (228)
T KOG0512|consen  143 ----------------------------FEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLK  194 (228)
T ss_pred             ----------------------------hhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhh
Confidence                                        555555555555666666666777777776654 345555544 56777777


Q ss_pred             CCCCCCHHHHHHHcCCH
Q 015680          350 DRWGNTPLDEGRMCGNK  366 (403)
Q Consensus       350 ~~~g~t~l~~A~~~~~~  366 (403)
                      +..+.||+++|.+.+-.
T Consensus       195 nn~eeta~~iARRT~~s  211 (228)
T KOG0512|consen  195 NNLEETAFDIARRTSMS  211 (228)
T ss_pred             cCccchHHHHHHHhhhh
Confidence            77788888888776544

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=3.7e-19  Score=139.73  Aligned_cols=121  Identities=23%  Similarity=0.268  Sum_probs=97.4

Q ss_pred             chHHHHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcC
Q 015680          155 GRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG  234 (403)
Q Consensus       155 ~~~ll~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~  234 (403)
                      ..+++..+...+....+..++. +..-+++..+.++.||||.|+++|+.++++.|+..|++++.+...|+||||-||.=.
T Consensus        63 p~rl~lwaae~nrl~eV~~lL~-e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWn  141 (228)
T KOG0512|consen   63 PIRLLLWAAEKNRLTEVQRLLS-EKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWN  141 (228)
T ss_pred             HHHHHHHHHhhccHHHHHHHHH-hccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhccc
Confidence            3444555555544433333333 344566788999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCC-hHHHHHHH
Q 015680          235 YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH-DGVTSLLV  276 (403)
Q Consensus       235 ~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~-~~~v~~L~  276 (403)
                      +.+++.+|+++|+|+|.......||||+||-..+ ...+++|+
T Consensus       142 N~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll  184 (228)
T KOG0512|consen  142 NFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLL  184 (228)
T ss_pred             chhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHh
Confidence            9999999999999999999999999999997654 33444443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.79  E-value=2.3e-18  Score=165.56  Aligned_cols=184  Identities=26%  Similarity=0.345  Sum_probs=158.9

Q ss_pred             hhHHHhhccCCHHHHHHHHHcC---------CCccccCCCCCcHHHHHHHc---CcHHHHHHHHhcCCC----CCcC-CC
Q 015680          192 LRFNSAAYHGDLYQLKGLIRAG---------ADLNKTDYDGRSPLHLATSR---GYEDITLFLIQKGVD----INIK-DK  254 (403)
Q Consensus       192 ~~l~~a~~~~~~~~~~~ll~~~---------~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~----~~~~-~~  254 (403)
                      .++..|...+..+.+..++..+         .+++.+...|.|+||.|...   ++.++++.|++.-+.    +..- ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            4577788888888888777654         45777788999999999973   455899999986432    2222 23


Q ss_pred             CCCcHHHHHHHcCChHHHHHHHHcCCCcccc---------C----------------CCchHHHHHHcCCHHHHHHHHHC
Q 015680          255 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVD---------D----------------AGSFLCIAVARGDSDLLKRVLSN  309 (403)
Q Consensus       255 ~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~---------~----------------~~~~l~~a~~~~~~~~v~~Ll~~  309 (403)
                      .|.||||.|+.+.+.++|++|++.|+|++..         |                |..||.+|+--++.+|+++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            5999999999999999999999999998851         1                23689999999999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCC--cccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 015680          310 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS--VFTKDRWGNTPLDEGRMCGNKNLIKLLEDA  375 (403)
Q Consensus       310 ~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d--~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  375 (403)
                      |+|++.+|.+|+|.||..+..-..++-.++++.|++  ...+|+.|-|||-+|++-|+.+|.+.+++.
T Consensus       263 gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  263 GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999999999999999999999999999999999  889999999999999999999999999988

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.78  E-value=2e-18  Score=128.13  Aligned_cols=87  Identities=36%  Similarity=0.500  Sum_probs=40.8

Q ss_pred             HHHHHcCChHHHHHHHHcCCCccccCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHH
Q 015680          261 LEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL  340 (403)
Q Consensus       261 ~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll  340 (403)
                      |+|+..|+.+++++|++.+.+++.  +++|+|+|+..|+.+++++|++.|++++.+|.+|+||||+|+..|+.+++++|+
T Consensus         2 ~~A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll   79 (89)
T PF12796_consen    2 HIAAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLL   79 (89)
T ss_dssp             HHHHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            444444444444444444444443  344444444444444444444444444444445555555555555555555555


Q ss_pred             HcCCCcccC
Q 015680          341 EAGASVFTK  349 (403)
Q Consensus       341 ~~g~d~~~~  349 (403)
                      ++|++++.+
T Consensus        80 ~~g~~~~~~   88 (89)
T PF12796_consen   80 EHGADVNIR   88 (89)
T ss_dssp             HTTT-TTSS
T ss_pred             HcCCCCCCc
Confidence            555554443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.77  E-value=3.3e-18  Score=127.05  Aligned_cols=89  Identities=39%  Similarity=0.586  Sum_probs=76.4

Q ss_pred             HHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHH
Q 015680          194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTS  273 (403)
Q Consensus       194 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~  273 (403)
                      ||+|++.|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            6889999999999999998877765    788999999999999999999999999999989999999999999999999


Q ss_pred             HHHHcCCCccccC
Q 015680          274 LLVKEGASLNVDD  286 (403)
Q Consensus       274 ~L~~~~~~~~~~~  286 (403)
                      +|+++|++++.+|
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            9999988887654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.77  E-value=1.6e-18  Score=146.95  Aligned_cols=131  Identities=27%  Similarity=0.363  Sum_probs=104.5

Q ss_pred             hccCCHHHHHHHHH-cCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHH
Q 015680          198 AYHGDLYQLKGLIR-AGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV  276 (403)
Q Consensus       198 ~~~~~~~~~~~ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~  276 (403)
                      |..|+.-.|+..|+ ..-|+|.-|..|.+|||+||..|+..+++.|++.|+.+|..+....||||+|+.+|+.++|+.|+
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll   87 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLL   87 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHH
Confidence            33444433443333 34567777888888888888888888888888888888888877888888888888888888888


Q ss_pred             HcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q 015680          277 KEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA  328 (403)
Q Consensus       277 ~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~  328 (403)
                      +..+++|..+  |+||||+||-+|.-.+.+-|+..|+.++..+++|.|||..|-
T Consensus        88 ~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   88 SRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             HHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            8888888766  778888888888888888888888888888888888888773

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.76  E-value=2.5e-17  Score=130.25  Aligned_cols=120  Identities=40%  Similarity=0.566  Sum_probs=80.7

Q ss_pred             CCCCcHHHHHHHcCChHHHHHHHHcCCCccc--cCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 015680          254 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNV--DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEG  331 (403)
Q Consensus       254 ~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~--~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~  331 (403)
                      ..|.||||+|+..++.+++++|++++.+.+.  ..|.+|+|.|+..++.+++++|++.|++++..+..|.||+|+|+..+
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~   84 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNG   84 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence            4455555555555555555555555544222  22445555555555556666666666666666777888888888888


Q ss_pred             cHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 015680          332 LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE  373 (403)
Q Consensus       332 ~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  373 (403)
                      +.+++++|+++|.+.+..+..|.||+++|...++.+++++|+
T Consensus        85 ~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          85 NLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            888888888888777778888888888888888888888764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.75  E-value=1e-18  Score=171.00  Aligned_cols=210  Identities=25%  Similarity=0.260  Sum_probs=131.0

Q ss_pred             HhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCC--------------------
Q 015680          190 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI--------------------  249 (403)
Q Consensus       190 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~--------------------  249 (403)
                      ..|+|..||..|+.|.+++++.+|+++.-+|..|.+||.+|+..|+..+|+.|+++.+++                    
T Consensus       757 ~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr  836 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGR  836 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCc
Confidence            345555555555555555555555555555555555555555555555555555544444                    


Q ss_pred             --------------CcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccCC----CchHHHHHHcCCHHHHHHHHHCCC
Q 015680          250 --------------NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA----GSFLCIAVARGDSDLLKRVLSNGV  311 (403)
Q Consensus       250 --------------~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~----~~~l~~a~~~~~~~~v~~Ll~~~~  311 (403)
                                    ..++-...|||.+|...|..+++..|+.+|+.++...|    -+||++|.++|+...+..|++.|.
T Consensus       837 ~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gs  916 (2131)
T KOG4369|consen  837 TRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGS  916 (2131)
T ss_pred             chHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccc
Confidence                          44444444555555555555555555555555554332    256666666666666666666666


Q ss_pred             CCCCCC-CCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcccccc-ccc------
Q 015680          312 DPNSRD-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQL-SEF------  383 (403)
Q Consensus       312 ~~~~~~-~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~-~~~------  383 (403)
                      ++|..- .+-+|+|-+|+..|+.+++.+|+.+.+++..+.+.|-|||+.++..|.+|+=++|+.+|+|.- .+.      
T Consensus       917 diNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dt  996 (2131)
T KOG4369|consen  917 DINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDT  996 (2131)
T ss_pred             hhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCc
Confidence            665432 345677777777777777777777777777777888999999999999999999999988732 221      


Q ss_pred             ---cccccchhhhhhhhcc
Q 015680          384 ---HYCSQGMIGIAENLLL  399 (403)
Q Consensus       384 ---~~~~~~~~~~~~~l~~  399 (403)
                         ....-|+-.+++.||+
T Consensus       997 alti~a~kGh~kfv~~lln 1015 (2131)
T KOG4369|consen  997 ALTIPANKGHTKFVPKLLN 1015 (2131)
T ss_pred             cceeecCCCchhhhHHhhC
Confidence               1245566777777776

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.75  E-value=1.6e-18  Score=169.70  Aligned_cols=197  Identities=25%  Similarity=0.334  Sum_probs=171.4

Q ss_pred             chhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcC--CCCCCcHHHHH
Q 015680          186 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK--DKFGNTPLLEA  263 (403)
Q Consensus       186 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~--~~~g~t~l~~A  263 (403)
                      ++..+.|+|.+||..|+.++++.||..|++--.++-..+|||.+|...|..++++.|+..|..+|.+  ...|.+||++|
T Consensus       820 sdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmla  899 (2131)
T KOG4369|consen  820 SDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLA  899 (2131)
T ss_pred             cccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhh
Confidence            4556678899999999999999999999987778888899999999999999999999999888866  45689999999


Q ss_pred             HHcCChHHHHHHHHcCCCccc---cCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHH
Q 015680          264 IKCGHDGVTSLLVKEGASLNV---DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL  340 (403)
Q Consensus       264 ~~~~~~~~v~~L~~~~~~~~~---~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll  340 (403)
                      +.+|+.+.++.|++.|.++|.   .+.+|+|.+|+-.|+.+++.+||...+++..+-..|-|||+-++..|++++=.+|+
T Consensus       900 tmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li  979 (2131)
T KOG4369|consen  900 TMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLI  979 (2131)
T ss_pred             hhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhh
Confidence            999999999999999999886   34568899999999999999999998888888888999999998888888888888


Q ss_pred             HcCCCc-----------------------------------ccCCCCCCCHHHHHHHcCCHHHHHHHHHcccccccc
Q 015680          341 EAGASV-----------------------------------FTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE  382 (403)
Q Consensus       341 ~~g~d~-----------------------------------~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~  382 (403)
                      ..|+|.                                   ..+|++|+|+|-+|+.-|+.-.+..|+++++|.-..
T Consensus       980 ~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~q 1056 (2131)
T KOG4369|consen  980 AAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQ 1056 (2131)
T ss_pred             hcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccChhhh
Confidence            888774                                   366778888988898888888888888888875543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.74  E-value=9.4e-17  Score=126.97  Aligned_cols=122  Identities=45%  Similarity=0.690  Sum_probs=108.1

Q ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHH
Q 015680          219 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVA  296 (403)
Q Consensus       219 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~  296 (403)
                      .+..|.||||.|+..++.+++++|++.+.+.+..+..|.||+|+|+..++.+++++|++.+++++..+  +.+|+|+|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            45678899999999999999999999998888888899999999999999999999999986665543  6689999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHH
Q 015680          297 RGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL  340 (403)
Q Consensus       297 ~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll  340 (403)
                      .++.+++++|+.++.+++..+..|.||+++|...++.+++++|+
T Consensus        83 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999889999999999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PRK09392 ftrB transcriptional activator FtrB; Provisional

Probab=99.70  E-value=1.4e-16  Score=140.91  Aligned_cols=130  Identities=20%  Similarity=0.260  Sum_probs=120.2

Q ss_pred             HhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCccc
Q 015680           35 LYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG  114 (403)
Q Consensus        35 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g  114 (403)
                      ...+.++..++|..|++++++.+.+....++|++|++|+++|++.+.+|+|++|.|+++... +|++.++.++.+|++||
T Consensus         4 ~~~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~-~~~~~~i~~~~~g~~~g   82 (236)
T PRK09392          4 EDLIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASS-QDRETTLAILRPVSTFI   82 (236)
T ss_pred             hHHHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcC-CCceEEEEEeCCCchhh
Confidence            34568899999999999999999999999999999999999999999999999999999865 66788899999999999


Q ss_pred             ccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          115 EVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       115 ~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      +.+++.+.++.++++|.++|+++.++.+.|..++..++.....++..+...
T Consensus        83 ~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~  133 (236)
T PRK09392         83 LAAVVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGC  133 (236)
T ss_pred             hHHHhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888887777653

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.68  E-value=6.3e-16  Score=148.97  Aligned_cols=183  Identities=23%  Similarity=0.294  Sum_probs=150.4

Q ss_pred             eecCcchhhHhhhHHHhhc---cCCHHHHHHHHHcCCC-cc----ccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcC
Q 015680          181 FHIGKHEAELALRFNSAAY---HGDLYQLKGLIRAGAD-LN----KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK  252 (403)
Q Consensus       181 ~~~~~~~~~~~~~l~~a~~---~~~~~~~~~ll~~~~~-~~----~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  252 (403)
                      +.++.....|.|.||.|.-   .+..++++.|++.-+. +|    .-...|.||||+|+.+.+.++|++|++.|+|++.+
T Consensus       134 w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aR  213 (782)
T KOG3676|consen  134 WKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHAR  213 (782)
T ss_pred             hccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhH
Confidence            3444446678899998886   4566889999986543 22    12367999999999999999999999999997753


Q ss_pred             --------C---------------CCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHH
Q 015680          253 --------D---------------KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVL  307 (403)
Q Consensus       253 --------~---------------~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll  307 (403)
                              +               ..|..||.+||..++.+++++|+++|+|++..|  |+|-||..+.+-..+|..+++
T Consensus       214 a~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L  293 (782)
T KOG3676|consen  214 ACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLAL  293 (782)
T ss_pred             hhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHH
Confidence                    1               247789999999999999999999999999877  789999999999999999999


Q ss_pred             HCCCC--CCCCCCCCChHHHHHHHcCcHHHHHHHHHc--------------CCCcccCCC--CCCCHHHHHHHc
Q 015680          308 SNGVD--PNSRDYDHRTPLHVAASEGLYLMAKLLLEA--------------GASVFTKDR--WGNTPLDEGRMC  363 (403)
Q Consensus       308 ~~~~~--~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~--------------g~d~~~~~~--~g~t~l~~A~~~  363 (403)
                      +.|++  ...+|..|-|||.+|+..|+.++.+++++.              ..+++..|.  +.+++|.+.+..
T Consensus       294 ~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg  367 (782)
T KOG3676|consen  294 ELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYG  367 (782)
T ss_pred             hcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcC
Confidence            99999  889999999999999999999999999987              133344443  345677776665

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.63  E-value=1.9e-15  Score=106.15  Aligned_cols=103  Identities=25%  Similarity=0.229  Sum_probs=89.2

Q ss_pred             cHHHHHHHcCChHHHHHHHHcCCCcccc-CCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHH
Q 015680          258 TPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMA  336 (403)
Q Consensus       258 t~l~~A~~~~~~~~v~~L~~~~~~~~~~-~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~  336 (403)
                      --+.|++.+|..+-|+..+..|.++|.. .+++|||+|+..|+.+++++|+..|++++..|++|-|||-.|+..|+.++|
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            3466888888888888888888777764 467999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCcccCCCCCCCHHHHH
Q 015680          337 KLLLEAGASVFTKDRWGNTPLDEG  360 (403)
Q Consensus       337 ~~Ll~~g~d~~~~~~~g~t~l~~A  360 (403)
                      ++|+++|+|...+.-+|.+.+..+
T Consensus        84 klLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   84 KLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHcCcccceeCCCchhHHhhc
Confidence            999999999988888888776644

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.62  E-value=6.7e-15  Score=129.20  Aligned_cols=133  Identities=41%  Similarity=0.567  Sum_probs=101.9

Q ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccCCCchHHHHHHc
Q 015680          218 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVAR  297 (403)
Q Consensus       218 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~l~~a~~~  297 (403)
                      ..+..+.+++|.++..+..+++++++..|++++.++..|.||+|+|+..++.                          ..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~--------------------------~~  121 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNP--------------------------PE  121 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCc--------------------------cc
Confidence            3445566777777777777777777777777777777777777777777663                          23


Q ss_pred             CCHHHHHHHHHCCC---CCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 015680          298 GDSDLLKRVLSNGV---DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  374 (403)
Q Consensus       298 ~~~~~v~~Ll~~~~---~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  374 (403)
                      ++.++++.|++.|+   ..+.+|..|+||||+|+..|+.+++++|++.|++++..+..|.|+++.|+..++.++++++++
T Consensus       122 ~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         122 GNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLD  201 (235)
T ss_pred             chHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHh
Confidence            33666677777776   455668888999999999888889999998888888888889999999999999999998888


Q ss_pred             cc
Q 015680          375 AK  376 (403)
Q Consensus       375 ~~  376 (403)
                      .+
T Consensus       202 ~~  203 (235)
T COG0666         202 KG  203 (235)
T ss_pred             cC
Confidence            75

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=99.62  E-value=7.4e-15  Score=127.66  Aligned_cols=119  Identities=14%  Similarity=0.206  Sum_probs=110.2

Q ss_pred             CCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccCC-Ccc
Q 015680           47 KGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNI-PQP  125 (403)
Q Consensus        47 ~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~-~~~  125 (403)
                      +.+++++++++...+..++|++|++|+.+|++.+++|+|++|.++++..+.+|++.++.++.+|++||+..++.+. ++.
T Consensus         6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~   85 (211)
T PRK11753          6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS   85 (211)
T ss_pred             CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCce
Confidence            5689999999999999999999999999999999999999999999998899999999999999999999988764 678


Q ss_pred             eeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          126 YTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       126 ~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      .+++|.++|+++.++.+.|.+++..++.....++..+.+.
T Consensus        86 ~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~  125 (211)
T PRK11753         86 AWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARR  125 (211)
T ss_pred             EEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999888777766654

>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

Probab=99.61  E-value=6.6e-15  Score=114.42  Aligned_cols=113  Identities=37%  Similarity=0.548  Sum_probs=106.0

Q ss_pred             CCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccCCCc
Q 015680           45 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQ  124 (403)
Q Consensus        45 ~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~~  124 (403)
                      +|..++++++..+...++.+.|++|++|+.+|++.+++|+|.+|.++++..+.+|++..+..+.+|+++|...++.+.++
T Consensus         1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~   80 (115)
T cd00038           1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPR   80 (115)
T ss_pred             CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999998888889


Q ss_pred             ceeEEEeccceeeeechHhHHHHHHHHhhcchH
Q 015680          125 PYTVRICELSRLLRIDKQSFTSILEIYFCDGRK  157 (403)
Q Consensus       125 ~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~  157 (403)
                      ..++.|.++|+++.++.+.+.+++..++.....
T Consensus        81 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~  113 (115)
T cd00038          81 SATVRALTDSELLVLPRSDFRRLLQEYPELARR  113 (115)
T ss_pred             CceEEEcCceEEEEEeHHHHHHHHHHCcHhHHh
Confidence            999999999999999999999999988765543

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of

>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional

Probab=99.58  E-value=2.5e-14  Score=126.49  Aligned_cols=125  Identities=13%  Similarity=0.151  Sum_probs=111.7

Q ss_pred             hhccCCCCCCCHHHHHHHHHHhh-eeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCccccccc
Q 015680           40 IEKVSLFKGCSSEFINQIVIRLH-EEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSI  118 (403)
Q Consensus        40 l~~~~~f~~l~~~~~~~l~~~~~-~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~l  118 (403)
                      +++.+.|..+++++++.+..... .+.|+||++|+.+||+.+++|+|.+|.|++++.+.+|++.++.++.+|++||...+
T Consensus        15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~   94 (235)
T PRK11161         15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI   94 (235)
T ss_pred             ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence            56677777899999999998875 57899999999999999999999999999999999999999999999999998766


Q ss_pred             ccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          119 LCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       119 l~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      +. ..++.+++|.++++++.++.+.|.+++..+|.....++..+...
T Consensus        95 ~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~  140 (235)
T PRK11161         95 GS-GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGE  140 (235)
T ss_pred             cC-CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHH
Confidence            44 45567899999999999999999999999999988887777664

>PRK10402 DNA-binding transcriptional activator YeiL; Provisional

Probab=99.55  E-value=2.1e-14  Score=125.91  Aligned_cols=110  Identities=15%  Similarity=0.147  Sum_probs=102.5

Q ss_pred             HHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccCCCcceeEEEeccce
Q 015680           56 QIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSR  135 (403)
Q Consensus        56 ~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~  135 (403)
                      .+.+....+.|++|++|+.+|++.+.+|+|++|.|+++..+.+|++.++.++.+|++||+.+++.+.+++.+++|.++|+
T Consensus        26 ~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~~  105 (226)
T PRK10402         26 DVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEECW  105 (226)
T ss_pred             HHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEeccEE
Confidence            36677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          136 LLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       136 ~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      ++.++.+.|..++..++.....++..+...
T Consensus       106 i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~  135 (226)
T PRK10402        106 CLALPMKDCRPLLLNDALFLRKLCKFLSHK  135 (226)
T ss_pred             EEEEEHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            999999999999999998888877777654

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.55  E-value=1.6e-14  Score=101.59  Aligned_cols=93  Identities=30%  Similarity=0.463  Sum_probs=86.0

Q ss_pred             hHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHH
Q 015680          290 FLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI  369 (403)
Q Consensus       290 ~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v  369 (403)
                      -+.|+..+|.++-|+-.+..|.++|.. ..|+||||+|+..|+.+++++|+..|++++.+|+.|-|||.-|+-.||.++|
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            467999999999999999999877765 4799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccccccccc
Q 015680          370 KLLEDAKCTQLSEF  383 (403)
Q Consensus       370 ~~Ll~~~~~~~~~~  383 (403)
                      ++|+++|++.....
T Consensus        84 klLL~~GAdrt~~~   97 (117)
T KOG4214|consen   84 KLLLQNGADRTIHA   97 (117)
T ss_pred             HHHHHcCcccceeC
Confidence            99999999876554

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.55  E-value=2.2e-14  Score=130.84  Aligned_cols=145  Identities=26%  Similarity=0.410  Sum_probs=132.4

Q ss_pred             ccccceeeeeeeecChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEE
Q 015680           12 GRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLE   91 (403)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~   91 (403)
                      +.-+|++++..||+.++.++.-+.+.+.|+++++|..+.+..+.++..++++.-|+|||+|++.||.+..+|||.+|++.
T Consensus       281 ~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~  360 (536)
T KOG0500|consen  281 KIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLA  360 (536)
T ss_pred             ccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEE
Confidence            45589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCeeEeeeecCCCcccccccc------cCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHH
Q 015680           92 EVGVGEDGSEETVSQLQPNSSFGEVSIL------CNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVL  159 (403)
Q Consensus        92 ~~~~~~~g~~~~~~~~~~G~~~g~~~ll------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll  159 (403)
                      +.  +++|.. ....+.+|++|||++++      .+..+.++++....+.+++++++++.+.++.+|+....+.
T Consensus       361 Vv--~dDg~t-~~~~L~~G~~FGEisIlni~g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~  431 (536)
T KOG0500|consen  361 VV--ADDGVT-VFVTLKAGSVFGEISILNIKGNKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLE  431 (536)
T ss_pred             EE--ecCCcE-EEEEecCCceeeeeEEEEEcCcccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHH
Confidence            97  455554 46788999999999975      3456789999999999999999999999999998877766

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=99.55  E-value=2.5e-14  Score=106.44  Aligned_cols=91  Identities=33%  Similarity=0.561  Sum_probs=86.4

Q ss_pred             eeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccCCCcceeEEEeccceeeeechH
Q 015680           63 EEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQ  142 (403)
Q Consensus        63 ~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~  142 (403)
                      +++|++|++|+++|++.+.+|+|++|.++++..+.+|+..++..+.+|++||..+++.+.++..+++|.++|+++.++++
T Consensus         1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~   80 (91)
T PF00027_consen    1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPRE   80 (91)
T ss_dssp             -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHH
T ss_pred             CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHH
Confidence            36899999999999999999999999999999999999899999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhh
Q 015680          143 SFTSILEIYFC  153 (403)
Q Consensus       143 ~~~~l~~~~~~  153 (403)
                      .|..++.++|+
T Consensus        81 ~~~~~~~~~p~   91 (91)
T PF00027_consen   81 DFLQLLQQDPE   91 (91)
T ss_dssp             HHHHHHHHSHH
T ss_pred             HHHHHHHhCcC
Confidence            99999998764

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain

Probab=99.55  E-value=1.2e-13  Score=107.99  Aligned_cols=115  Identities=32%  Similarity=0.431  Sum_probs=104.7

Q ss_pred             CCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccc--cCC
Q 015680           45 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSIL--CNI  122 (403)
Q Consensus        45 ~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll--~~~  122 (403)
                      +|..++++++..+......+.|++|++|+.+|++.+.+|+|.+|.++++..+.+|++..+..+.+|++||+..++  ...
T Consensus         1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~   80 (120)
T smart00100        1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRR   80 (120)
T ss_pred             CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCc
Confidence            578899999999999999999999999999999999999999999999998889999999999999999999987  345


Q ss_pred             CcceeEEEeccceeeeechHhHHHHHHHHhhcchHHH
Q 015680          123 PQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVL  159 (403)
Q Consensus       123 ~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll  159 (403)
                      +...++.+.+++.++.++...+...+...+......+
T Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  117 (120)
T smart00100       81 AASATAVALELATLLRIDFRDFLQLLQENPQLLLELL  117 (120)
T ss_pred             ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHH
Confidence            7788999999999999999999999988876655443

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.53  E-value=9.8e-15  Score=97.32  Aligned_cols=55  Identities=42%  Similarity=0.542  Sum_probs=33.4

Q ss_pred             HHHCC-CCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHH
Q 015680          306 VLSNG-VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG  360 (403)
Q Consensus       306 Ll~~~-~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A  360 (403)
                      |++.| ++++..|..|.||||+||..|+.+++++|++.|+|++.+|..|.||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 88999999999999999999999999999999999999999999999997

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.53  E-value=2.4e-14  Score=94.99  Aligned_cols=54  Identities=44%  Similarity=0.597  Sum_probs=41.3

Q ss_pred             CChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 015680          320 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE  373 (403)
Q Consensus       320 g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  373 (403)
                      |+||||+|+..|+.+++++|+++|+|++.+|.+|.||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            678888888888888888888888888888888888888888888888888875

...

>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

Probab=99.52  E-value=1.1e-13  Score=120.32  Aligned_cols=125  Identities=23%  Similarity=0.341  Sum_probs=110.0

Q ss_pred             hccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCccccccccc
Q 015680           41 EKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILC  120 (403)
Q Consensus        41 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~  120 (403)
                      ...+.|..++.+....+......+.+++|++|+.+|++.+.+|+|.+|.+++++...+|++.++.++.+|++||+.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~   82 (214)
T COG0664           3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG   82 (214)
T ss_pred             ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence            34566777788887777788899999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          121 NIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       121 ~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      +.++.++++|.++++++.++++.|..++...|.....++..+..+
T Consensus        83 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~  127 (214)
T COG0664          83 GDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARR  127 (214)
T ss_pred             CCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence            889999999999999999999999998888455555555555553

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.52  E-value=9.5e-14  Score=121.82  Aligned_cols=125  Identities=35%  Similarity=0.487  Sum_probs=108.8

Q ss_pred             chhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCc-----HHHHHHHHhcCC---CCCcCCCCCC
Q 015680          186 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGY-----EDITLFLIQKGV---DINIKDKFGN  257 (403)
Q Consensus       186 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~~~---~~~~~~~~g~  257 (403)
                      .+..+.++++.++..++.+.+++++..+++++..+..|.||||+|+..++     .+++++|++.|+   ..+.+|..|+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~  148 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN  148 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCC
Confidence            34446789999999999999999999999999999999999999999999     999999999999   5666799999


Q ss_pred             cHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCC
Q 015680          258 TPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNG  310 (403)
Q Consensus       258 t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~  310 (403)
                      ||||+|+..|+.++++.|++.+++++..+  +.|++++|+..++.+++..+++.+
T Consensus       149 tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         149 TPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             chhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999888777643  567777777777777777777754

>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]

Probab=99.50  E-value=3.7e-14  Score=124.54  Aligned_cols=136  Identities=25%  Similarity=0.375  Sum_probs=119.2

Q ss_pred             cChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEe
Q 015680           25 LYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETV  104 (403)
Q Consensus        25 ~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~  104 (403)
                      ..||++-......+.++..-+|+.|+++++..+...+.++.+++|+.|+.+|+.+++||+|-+|.+.+++.     ..-+
T Consensus       109 ~~pKd~e~~~~L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~-----~~~v  183 (368)
T KOG1113|consen  109 YIPKDDETRRRLEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN-----GTYV  183 (368)
T ss_pred             CCCCCHHHHHHHHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC-----CeEE
Confidence            45665544445567888899999999999999999999999999999999999999999999999999983     3457


Q ss_pred             eeecCCCcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          105 SQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       105 ~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      ..+.+|+.|||.+++++.|+.+++.|.+++.+|.+++..|+.++..+....+.+....+++
T Consensus       184 ~~~~~g~sFGElALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s  244 (368)
T KOG1113|consen  184 TTYSPGGSFGELALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLES  244 (368)
T ss_pred             eeeCCCCchhhhHhhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhc
Confidence            8999999999999999999999999999999999999999998877766666666666654

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.45  E-value=2e-13  Score=90.52  Aligned_cols=54  Identities=41%  Similarity=0.656  Sum_probs=40.8

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHH
Q 015680          223 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV  276 (403)
Q Consensus       223 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~  276 (403)
                      |+||||+|+..|+.+++++|++.|.+++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            578888888888888888888888888888888888888888888888888875

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.45  E-value=8.3e-14  Score=92.83  Aligned_cols=55  Identities=45%  Similarity=0.664  Sum_probs=33.2

Q ss_pred             HHHcC-CCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHH
Q 015680          209 LIRAG-ADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  263 (403)
Q Consensus       209 ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A  263 (403)
                      ||++| .+++..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 88999999999999999999999999999999999999999999999997

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.44  E-value=6.5e-13  Score=133.68  Aligned_cols=99  Identities=29%  Similarity=0.389  Sum_probs=48.6

Q ss_pred             HHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHH
Q 015680          260 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAK  337 (403)
Q Consensus       260 l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~  337 (403)
                      |+.|+..|+.+.++.|+++|++++..+  |.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.++++
T Consensus        86 L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~  165 (664)
T PTZ00322         86 LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQ  165 (664)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHH
Confidence            444444455555555555444444332  344455555555555555555555555555555555555555555555555


Q ss_pred             HHHHc-------CCCcccCCCCCCCHHH
Q 015680          338 LLLEA-------GASVFTKDRWGNTPLD  358 (403)
Q Consensus       338 ~Ll~~-------g~d~~~~~~~g~t~l~  358 (403)
                      +|+++       |++++..+..|.+|+.
T Consensus       166 ~Ll~~~~~~~~~ga~~~~~~~~g~~~~~  193 (664)
T PTZ00322        166 LLSRHSQCHFELGANAKPDSFTGKPPSL  193 (664)
T ss_pred             HHHhCCCcccccCCCCCccccCCCCccc
Confidence            55544       4444444444444433

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.43  E-value=6.4e-13  Score=133.74  Aligned_cols=87  Identities=39%  Similarity=0.609  Sum_probs=84.9

Q ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHH
Q 015680          289 SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL  368 (403)
Q Consensus       289 ~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~  368 (403)
                      ..|+.|+..|+.++++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+.+|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHc
Q 015680          369 IKLLEDA  375 (403)
Q Consensus       369 v~~Ll~~  375 (403)
                      +++|+++
T Consensus       164 v~~Ll~~  170 (664)
T PTZ00322        164 VQLLSRH  170 (664)
T ss_pred             HHHHHhC
Confidence            9999999

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.43  E-value=2.2e-13  Score=125.32  Aligned_cols=135  Identities=21%  Similarity=0.290  Sum_probs=119.8

Q ss_pred             eecChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCee
Q 015680           23 IRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEE  102 (403)
Q Consensus        23 ~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~  102 (403)
                      |+...|+.-.+.++.+.+..-.++++|+.+++.++...+...+|++|++|+++||++..+|++.+|.+.+.+     ..+
T Consensus       139 l~~~~Kd~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~-----~g~  213 (732)
T KOG0614|consen  139 LPRYNKDVGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR-----EGK  213 (732)
T ss_pred             cccccCCccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee-----CCe
Confidence            345556666777889999999999999999999999999999999999999999999999999999999998     456


Q ss_pred             EeeeecCCCcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHh
Q 015680          103 TVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNL  162 (403)
Q Consensus       103 ~~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~l  162 (403)
                      .+..+.+|.+||+.+++++.++.++++|.+++.+|.|+++.|+.+|.......+.-....
T Consensus       214 ll~~m~~gtvFGELAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~f  273 (732)
T KOG0614|consen  214 LLGKMGAGTVFGELAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNF  273 (732)
T ss_pred             eeeccCCchhhhHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999987655544433333

>PLN02868 acyl-CoA thioesterase family protein

Probab=99.42  E-value=1.7e-12  Score=123.82  Aligned_cols=114  Identities=18%  Similarity=0.217  Sum_probs=103.5

Q ss_pred             hHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccc
Q 015680           36 YMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE  115 (403)
Q Consensus        36 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~  115 (403)
                      ..+++++.++|+.|++++++++....+.++|++|++|+++|+..+.+|+|++|.|++++.+.+| +.++..+.+|++||+
T Consensus         6 ~~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~g-e~~l~~l~~Gd~fG~   84 (413)
T PLN02868          6 VVEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEE-SRPEFLLKRYDYFGY   84 (413)
T ss_pred             HHHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCC-cEEEEEeCCCCEeeh
Confidence            4567889999999999999999999999999999999999999999999999999999988887 678999999999997


Q ss_pred             cccccCCCcceeEEEeccceeeeechHhHHHHHHHHh
Q 015680          116 VSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYF  152 (403)
Q Consensus       116 ~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~  152 (403)
                      .  +.+.++..+++|.++++++.++.+.|.-+.....
T Consensus        85 ~--l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~  119 (413)
T PLN02868         85 G--LSGSVHSADVVAVSELTCLVLPHEHCHLLSPKSI  119 (413)
T ss_pred             h--hCCCCcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence            5  6778899999999999999999999876655443

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.42  E-value=1.6e-12  Score=110.83  Aligned_cols=118  Identities=22%  Similarity=0.231  Sum_probs=107.5

Q ss_pred             HhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCc-CCCCCCcHHHHHHHcCC
Q 015680          190 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI-KDKFGNTPLLEAIKCGH  268 (403)
Q Consensus       190 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~g~t~l~~A~~~~~  268 (403)
                      -..+|.-++..|+.+-+..||+.--++|.+|..|+|+|..|+..|++++++.|++.|+|+|. ++..+.||||+||.+|+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            34678999999999999999998667899999999999999999999999999999999984 56779999999999999


Q ss_pred             hHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHH
Q 015680          269 DGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVL  307 (403)
Q Consensus       269 ~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll  307 (403)
                      .++++.|++.|+.+...+  |+|+-..|+-.|+-++|..+-
T Consensus        92 ~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   92 QDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             chHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            999999999999998877  679999999999998888764

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=1.3e-12  Score=119.81  Aligned_cols=115  Identities=26%  Similarity=0.330  Sum_probs=84.2

Q ss_pred             hHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHH
Q 015680          193 RFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT  272 (403)
Q Consensus       193 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v  272 (403)
                      .|.-|+..|.+++|+.++.+--|+...+..|-|+||-|+-.|+++||++|++.|+++|..|.+||||||+||..++..+|
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence            45677888888888888887777777788888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCCCccc---cCCCchHHH--HHHcCCHHHHHHHH
Q 015680          273 SLLVKEGASLNV---DDAGSFLCI--AVARGDSDLLKRVL  307 (403)
Q Consensus       273 ~~L~~~~~~~~~---~~~~~~l~~--a~~~~~~~~v~~Ll  307 (403)
                      +.|+++|+-+-.   .|+.|+...  -..-|..+|.++|.
T Consensus       633 kqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  633 KQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            888888765432   344444222  12233445556554

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.39  E-value=6.8e-13  Score=122.10  Aligned_cols=124  Identities=22%  Similarity=0.356  Sum_probs=112.9

Q ss_pred             HHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCC-CCeeEeeeecCC
Q 015680           32 SQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGED-GSEETVSQLQPN  110 (403)
Q Consensus        32 ~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~-g~~~~~~~~~~G  110 (403)
                      .++.+..+|+.+|+|.+++++.+.++.+.++...|.+|++|+++|+.++.||+|.+|.|++.+.++. ++++.++.+..|
T Consensus       266 r~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kG  345 (732)
T KOG0614|consen  266 RHEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKG  345 (732)
T ss_pred             HHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhcccc
Confidence            3457888999999999999999999999999999999999999999999999999999999987754 788889999999


Q ss_pred             CcccccccccCCCcceeEEEecc-ceeeeechHhHHHHHHHHhhcc
Q 015680          111 SSFGEVSILCNIPQPYTVRICEL-SRLLRIDKQSFTSILEIYFCDG  155 (403)
Q Consensus       111 ~~~g~~~ll~~~~~~~~~~a~~~-~~~~~i~~~~~~~l~~~~~~~~  155 (403)
                      ++||+-+++...-+.+++.|..+ ++++.++++.|..++-...+..
T Consensus       346 d~FGE~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~  391 (732)
T KOG0614|consen  346 DYFGERALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELK  391 (732)
T ss_pred             chhhHHHhhccCccchhhhccCCCceEEEecHHHHHHhcccHHHhh
Confidence            99999999999889999999997 8999999999998876655443

>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial

Probab=99.38  E-value=2.1e-12  Score=110.51  Aligned_cols=97  Identities=25%  Similarity=0.298  Sum_probs=89.5

Q ss_pred             CCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccCCCc--ceeEEEeccceeeeechHhHHH
Q 015680           69 GEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQ--PYTVRICELSRLLRIDKQSFTS  146 (403)
Q Consensus        69 ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~~--~~~~~a~~~~~~~~i~~~~~~~  146 (403)
                      |+.|+.+|++.+++|+|.+|.|++++.+++|++.++.++.+|++||+.+++.+.++  ..+++|.++|+++.++.+.|.+
T Consensus         1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~   80 (193)
T TIGR03697         1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEK   80 (193)
T ss_pred             CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHH
Confidence            78999999999999999999999999999999999999999999999998887654  4779999999999999999999


Q ss_pred             HHHHHhhcchHHHHHhhhc
Q 015680          147 ILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       147 l~~~~~~~~~~ll~~ll~~  165 (403)
                      ++..+|.....++..+...
T Consensus        81 l~~~~p~l~~~~~~~l~~~   99 (193)
T TIGR03697        81 AIEEDPDLSMLLLQGLSSR   99 (193)
T ss_pred             HHHHChHHHHHHHHHHHHH
Confidence            9999999998888877653

Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.

>PRK09391 fixK transcriptional regulator FixK; Provisional

Probab=99.38  E-value=3.3e-12  Score=112.25  Aligned_cols=104  Identities=19%  Similarity=0.207  Sum_probs=94.5

Q ss_pred             HHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccCCCcceeEEEeccceeee
Q 015680           59 IRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLR  138 (403)
Q Consensus        59 ~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~  138 (403)
                      .....++|++|++|+.+||+++++|+|++|.|++++.+.+|++.++.++.+|++||..   .+.++.++++|.++|+++.
T Consensus        36 ~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~v~~  112 (230)
T PRK09391         36 LVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTTVRL  112 (230)
T ss_pred             ceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCceEEEE
Confidence            4457899999999999999999999999999999999999999999999999999964   3556789999999999999


Q ss_pred             echHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          139 IDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       139 i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      ++.+.|.+++..++.....++..+...
T Consensus       113 i~~~~f~~l~~~~p~l~~~l~~~l~~~  139 (230)
T PRK09391        113 IKRRSLEQAAATDVDVARALLSLTAGG  139 (230)
T ss_pred             EEHHHHHHHHhhChHHHHHHHHHHHHH
Confidence            999999999999999988888777653

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.36  E-value=5.2e-12  Score=117.81  Aligned_cols=126  Identities=20%  Similarity=0.287  Sum_probs=114.3

Q ss_pred             hHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccc
Q 015680           36 YMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE  115 (403)
Q Consensus        36 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~  115 (403)
                      ..+++.++|+|+.|+++++.++.+.+....|.+||+|+..|.+.+++|+|.+|.|.++.  .+|+  .+..+..|++||.
T Consensus         5 ~~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~--~~g~--v~~~~~~gdlFg~   80 (610)
T COG2905           5 PDQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRS--DGGE--VLDRLAAGDLFGF   80 (610)
T ss_pred             HHHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEc--CCCe--eeeeeccCccccc
Confidence            35688999999999999999999999999999999999999999999999999999974  3443  7899999999999


Q ss_pred             cccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          116 VSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       116 ~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      .++++..+...+..|.+++-++.++++.|.+++..++.....+...+..+
T Consensus        81 ~~l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR  130 (610)
T COG2905          81 SSLFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKR  130 (610)
T ss_pred             hhhcccCCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            99999998888999999999999999999999999999887776565554

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.35  E-value=7.8e-12  Score=106.63  Aligned_cols=116  Identities=24%  Similarity=0.251  Sum_probs=101.0

Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC---CCchHHHHHHcCCH
Q 015680          224 RSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---AGSFLCIAVARGDS  300 (403)
Q Consensus       224 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~---~~~~l~~a~~~~~~  300 (403)
                      .+||.-++..++.+.+..|++.-.++|.+|+.|.|+|..|+-.|+.+.|+.|++.|+|+|...   +.||||.|+.+|+.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~   92 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQ   92 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCc
Confidence            478999999999999999998766699999999999999999999999999999999998754   45888888888888


Q ss_pred             HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHH
Q 015680          301 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL  339 (403)
Q Consensus       301 ~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~L  339 (403)
                      ++.++|++.|+.....+.-|+|+-..|+.-|+-++|..+
T Consensus        93 dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   93 DVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             hHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHH
Confidence            888888888888888888888888888888887777554

>PRK13918 CRP/FNR family transcriptional regulator; Provisional

Probab=99.33  E-value=6.8e-12  Score=108.23  Aligned_cols=83  Identities=24%  Similarity=0.380  Sum_probs=76.3

Q ss_pred             hheeeeCCCCeEEecCC--ccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccCCCcceeEEEeccceeee
Q 015680           61 LHEEFFLPGEVIMEQGN--VIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLR  138 (403)
Q Consensus        61 ~~~~~~~~ge~i~~~g~--~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~  138 (403)
                      .+.+.|++|++|+.+||  +.+++|+|++|.|++++.+.+|++.++..+.+|++||+..++ +.+++++++|.++++++.
T Consensus         6 ~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~~   84 (202)
T PRK13918          6 VDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRIDV   84 (202)
T ss_pred             cceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCceEEEE
Confidence            46789999999999999  779999999999999999999999999999999999997654 567889999999999999


Q ss_pred             echHhH
Q 015680          139 IDKQSF  144 (403)
Q Consensus       139 i~~~~~  144 (403)
                      ++...+
T Consensus        85 i~~~~~   90 (202)
T PRK13918         85 LNPALM   90 (202)
T ss_pred             EEHHHc
Confidence            998876

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.28  E-value=1e-11  Score=114.08  Aligned_cols=91  Identities=32%  Similarity=0.445  Sum_probs=80.3

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHH
Q 015680          291 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK  370 (403)
Q Consensus       291 l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~  370 (403)
                      |.=|+.-|-.++|+..+..--|+...+..|-|+||.|+..|+++||++|+..|+++|..|.+|.||||+|+..++..+|+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            44488888999999988777778888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccccccc
Q 015680          371 LLEDAKCTQLS  381 (403)
Q Consensus       371 ~Ll~~~~~~~~  381 (403)
                      .|.++|+-.+.
T Consensus       634 qLVe~GaavfA  644 (752)
T KOG0515|consen  634 QLVESGAAVFA  644 (752)
T ss_pred             HHHhccceEEe
Confidence            99999986554

>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.23  E-value=9.5e-12  Score=115.89  Aligned_cols=144  Identities=24%  Similarity=0.452  Sum_probs=128.1

Q ss_pred             cccceeeeeeeecChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEE
Q 015680           13 RKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEE   92 (403)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~   92 (403)
                      --||.++|..||..++.++.-..++..+.++.+|++++...+..+.-++..+.|=|||+|+..||.+.-+|||.-|.|.+
T Consensus       502 ~LDEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQV  581 (815)
T KOG0499|consen  502 MLDESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQV  581 (815)
T ss_pred             cccHHHHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEE
Confidence            34788899999999999888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCeeEeeeecCCCcccccccc---cCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHH
Q 015680           93 VGVGEDGSEETVSQLQPNSSFGEVSIL---CNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKV  158 (403)
Q Consensus        93 ~~~~~~g~~~~~~~~~~G~~~g~~~ll---~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~l  158 (403)
                      .-  .+..+.++..++.|++|||++++   .+..+.++++|...|.++.+++.++.+++..+|+....+
T Consensus       582 lG--Gp~~~~Vl~tL~~GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iL  648 (815)
T KOG0499|consen  582 LG--GPDGTKVLVTLKAGSVFGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRIL  648 (815)
T ss_pred             ec--CCCCCEEEEEecccceeeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHH
Confidence            63  33456778999999999999976   445678999999999999999999999999998764433

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.00  E-value=6.4e-10  Score=101.19  Aligned_cols=102  Identities=34%  Similarity=0.508  Sum_probs=91.4

Q ss_pred             ceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhc-CCCCCcCCCCC
Q 015680          178 DITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFG  256 (403)
Q Consensus       178 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g  256 (403)
                      |+.-..+..+.++...+++|+..|++..++-+.=.|.|+...|...+|+||+|+..|+++++++|++. +.+++.+|.||
T Consensus       494 DPRR~~~~~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~  573 (622)
T KOG0506|consen  494 DPRREGGPRENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWG  573 (622)
T ss_pred             CcccccCcccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccC
Confidence            33334445566677789999999999999999999999999999999999999999999999999994 78999999999


Q ss_pred             CcHHHHHHHcCChHHHHHHHHcC
Q 015680          257 NTPLLEAIKCGHDGVTSLLVKEG  279 (403)
Q Consensus       257 ~t~l~~A~~~~~~~~v~~L~~~~  279 (403)
                      +|||--|...++.+++++|-+.-
T Consensus       574 rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  574 RTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             CCcchHhHhcCcHHHHHHHHHHh
Confidence            99999999999999999998763

>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]

Probab=99.00  E-value=7.3e-10  Score=97.85  Aligned_cols=120  Identities=23%  Similarity=0.370  Sum_probs=108.4

Q ss_pred             HHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCC
Q 015680           31 ISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPN  110 (403)
Q Consensus        31 ~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G  110 (403)
                      ..+.+|.+.|++.|++..|...+..++.+.+....|++|+.|+.+|++++.+|+|.+|.|.+.... +|  ..+ .+..|
T Consensus       233 kkrkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~-~~--v~v-kl~~~  308 (368)
T KOG1113|consen  233 KKRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKR-DG--VEV-KLKKG  308 (368)
T ss_pred             hhhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhcc-CC--eEE-Eechh
Confidence            355688899999999999999999999999999999999999999999999999999999998744 33  445 99999


Q ss_pred             CcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhc
Q 015680          111 SSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCD  154 (403)
Q Consensus       111 ~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~  154 (403)
                      ++||+.+++.+.|+.+++.|.....|..+++..|+.++.-..+.
T Consensus       309 dyfge~al~~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc~di  352 (368)
T KOG1113|consen  309 DYFGELALLKNLPRAATVVAKGRLKCAKLDKPRFERLLGPCQDI  352 (368)
T ss_pred             hhcchHHHHhhchhhceeeccCCceeeeeChHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999988665433

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.90  E-value=2.1e-09  Score=97.95  Aligned_cols=89  Identities=42%  Similarity=0.658  Sum_probs=84.6

Q ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHH-cCCCcccCCCCCCCHHHHHHHcCCHH
Q 015680          289 SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKN  367 (403)
Q Consensus       289 ~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~-~g~d~~~~~~~g~t~l~~A~~~~~~~  367 (403)
                      .++.+|+..|+...++.+.-.|.+++..|++.+|+||+|+..|+++++++|++ .+.+++.+|..|+|||+-|...+|.+
T Consensus       508 i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~  587 (622)
T KOG0506|consen  508 INVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKE  587 (622)
T ss_pred             hhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHH
Confidence            46999999999999999999999999999999999999999999999999998 58999999999999999999999999


Q ss_pred             HHHHHHHccc
Q 015680          368 LIKLLEDAKC  377 (403)
Q Consensus       368 ~v~~Ll~~~~  377 (403)
                      ++++|.++..
T Consensus       588 v~k~L~~~~~  597 (622)
T KOG0506|consen  588 VVKLLEEAQY  597 (622)
T ss_pred             HHHHHHHHhc
Confidence            9999998754

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.89  E-value=9.5e-09  Score=94.13  Aligned_cols=90  Identities=29%  Similarity=0.355  Sum_probs=82.3

Q ss_pred             hhHhhhHHHhhccCCHHHHHHHHHcCCCccccC-CCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHc
Q 015680          188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  266 (403)
Q Consensus       188 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~  266 (403)
                      .+....||..+..|+.+..--||..|+++|+.+ ..|.||||+|+..|+.--+++|+-+|+|++.+|.+|.||+.+|-..
T Consensus       131 ~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~  210 (669)
T KOG0818|consen  131 KDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQG  210 (669)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhc
Confidence            344557999999999999999999999999876 6799999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHH
Q 015680          267 GHDGVTSLLVK  277 (403)
Q Consensus       267 ~~~~~v~~L~~  277 (403)
                      |+-++.+.|++
T Consensus       211 gH~~laeRl~e  221 (669)
T KOG0818|consen  211 GHHELAERLVE  221 (669)
T ss_pred             CchHHHHHHHH
Confidence            99888777765

>PF13606 Ank_3: Ankyrin repeat

Probab=98.88  E-value=2.5e-09  Score=60.70  Aligned_cols=29  Identities=52%  Similarity=0.660  Sum_probs=21.3

Q ss_pred             CCChHHHHHHHcCcHHHHHHHHHcCCCcc
Q 015680          319 DHRTPLHVAASEGLYLMAKLLLEAGASVF  347 (403)
Q Consensus       319 ~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~  347 (403)
                      +|+||||+||+.|+.+++++|+++|+|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            46777777777777777777777777765

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.88  E-value=9.3e-09  Score=94.17  Aligned_cols=85  Identities=36%  Similarity=0.413  Sum_probs=68.9

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHH
Q 015680          291 LCIAVARGDSDLLKRVLSNGVDPNSRDY-DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI  369 (403)
Q Consensus       291 l~~a~~~~~~~~v~~Ll~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v  369 (403)
                      ||-.+..|+.+..-.|+..|+++|..+. .|.||||.|+..|+..=+++|.-+|||+...|.+|+||+.+|...||-++.
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~la  216 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELA  216 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHH
Confidence            6777777777777777777888877764 488888888888888888888888888888888888888888888888877


Q ss_pred             HHHHHc
Q 015680          370 KLLEDA  375 (403)
Q Consensus       370 ~~Ll~~  375 (403)
                      +-|++.
T Consensus       217 eRl~e~  222 (669)
T KOG0818|consen  217 ERLVEI  222 (669)
T ss_pred             HHHHHH
Confidence            776665

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]

Probab=98.82  E-value=3.1e-09  Score=99.28  Aligned_cols=145  Identities=20%  Similarity=0.284  Sum_probs=122.7

Q ss_pred             ccceeeeeeeecChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEE
Q 015680           14 KEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEV   93 (403)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~   93 (403)
                      .|++-+|+.-|..-|.+++-.+..+...+.|-|+-.++.-+..+.-..+..++.||+.|++.||..+.+.||++|.+++.
T Consensus       524 iDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVI  603 (971)
T KOG0501|consen  524 IDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVI  603 (971)
T ss_pred             cCHHHHhhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEe
Confidence            45566677666666668998999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCeeEeeeecCCCcccccccccC--CCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhh
Q 015680           94 GVGEDGSEETVSQLQPNSSFGEVSILCN--IPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLL  163 (403)
Q Consensus        94 ~~~~~g~~~~~~~~~~G~~~g~~~ll~~--~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll  163 (403)
                      +     +...+.++.+||+||....-..  ..+.++++|++.|.+..|.++.+.+.+.-+..+...+.+.+.
T Consensus       604 Q-----DDEVVAILGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl~  670 (971)
T KOG0501|consen  604 Q-----DDEVVAILGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNLT  670 (971)
T ss_pred             e-----cCcEEEEeecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhcee
Confidence            7     3457899999999998765322  235689999999999999999999998877666665555443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.81  E-value=7e-09  Score=60.68  Aligned_cols=33  Identities=45%  Similarity=0.623  Sum_probs=26.0

Q ss_pred             CCChHHHHHHHcCcHHHHHHHHHcCCCcccCCC
Q 015680          319 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR  351 (403)
Q Consensus       319 ~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~  351 (403)
                      +|+||||+|+..|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            477888888888888888888888888877653

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.75  E-value=2.7e-08  Score=92.62  Aligned_cols=97  Identities=19%  Similarity=0.210  Sum_probs=55.1

Q ss_pred             cCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCC----ccccCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q 015680          245 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS----LNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDH  320 (403)
Q Consensus       245 ~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~----~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g  320 (403)
                      +|.++..++....|.||+|+..|+-++|+|++.+|+.    .....|.|.||.|+..++..+.++|++.|+.+...|..|
T Consensus       888 ~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg  967 (1004)
T KOG0782|consen  888 NGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKG  967 (1004)
T ss_pred             cCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCC
Confidence            3445555555555555555555555555555555431    222334455555555555555555566666666666667


Q ss_pred             ChHHHHHHHcCcHHHHHHHHH
Q 015680          321 RTPLHVAASEGLYLMAKLLLE  341 (403)
Q Consensus       321 ~t~Lh~A~~~~~~~~~~~Ll~  341 (403)
                      .||-..|-+.|.++++.||-.
T Consensus       968 ~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  968 KTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             CChHHHHHhcCCchHHHHHhh
Confidence            777777766677776666644

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.75  E-value=2.8e-08  Score=92.74  Aligned_cols=88  Identities=33%  Similarity=0.431  Sum_probs=80.2

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCC----CCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCH
Q 015680          291 LCIAVARGDSDLLKRVLSNGVDP----NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK  366 (403)
Q Consensus       291 l~~a~~~~~~~~v~~Ll~~~~~~----~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~  366 (403)
                      |-.|+...+...+-+|+.+|...    ...+.+|.|+||+||..|++.+.++|+=+|+|+..+|..|+|+|.||...|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            66688888888999999998653    45567789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcccc
Q 015680          367 NLIKLLEDAKCT  378 (403)
Q Consensus       367 ~~v~~Ll~~~~~  378 (403)
                      +++..|+++|+.
T Consensus       708 ec~d~llq~gcp  719 (749)
T KOG0705|consen  708 ECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHcCCC
Confidence            999999999984

>PF13606 Ank_3: Ankyrin repeat

Probab=98.73  E-value=1.7e-08  Score=57.25  Aligned_cols=28  Identities=46%  Similarity=0.894  Sum_probs=17.6

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCC
Q 015680          223 GRSPLHLATSRGYEDITLFLIQKGVDIN  250 (403)
Q Consensus       223 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  250 (403)
                      |+||||+||..|+.+++++|+++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5566666666666666666666666554

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.72  E-value=3.8e-08  Score=91.65  Aligned_cols=89  Identities=22%  Similarity=0.333  Sum_probs=48.6

Q ss_pred             hhHhhhHHHhhccCCHHHHHHHHHcCCC--ccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHH
Q 015680          188 AELALRFNSAAYHGDLYQLKGLIRAGAD--LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  265 (403)
Q Consensus       188 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~  265 (403)
                      .+..+.||+|+..|+.++|+|+|++|+.  ++..+..|.|+||-|+..++..++++|++.|+.+...|..|.||-.-|-.
T Consensus       897 ~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqq  976 (1004)
T KOG0782|consen  897 PDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQ  976 (1004)
T ss_pred             cchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHh
Confidence            3444555555555555555555555533  34444555555555555555555555555555555555555555555555


Q ss_pred             cCChHHHHHHH
Q 015680          266 CGHDGVTSLLV  276 (403)
Q Consensus       266 ~~~~~~v~~L~  276 (403)
                      .|..+...||-
T Consensus       977 a~d~dlaayle  987 (1004)
T KOG0782|consen  977 AGDPDLAAYLE  987 (1004)
T ss_pred             cCCchHHHHHh
Confidence            55555555543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.71  E-value=9.9e-09  Score=99.57  Aligned_cols=127  Identities=22%  Similarity=0.255  Sum_probs=92.2

Q ss_pred             CCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC---CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHH
Q 015680          249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLH  325 (403)
Q Consensus       249 ~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~---~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh  325 (403)
                      .|.+|..|+|+||+|+..|..++++||+.+|+++...|   |.||||.|...|+++++..|+.+|+.+...|.+|.+||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            67889999999999999999999999999999988876   678999999999999999999999888889999999988


Q ss_pred             HHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcC--CHHHHHHHHHcc
Q 015680          326 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG--NKNLIKLLEDAK  376 (403)
Q Consensus       326 ~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~--~~~~v~~Ll~~~  376 (403)
                      .-+.-.-..+. ....-.-|+-....+-+.-|.++-.+.  +++.|.++-..|
T Consensus       125 ~~~r~~~~~i~-~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg  176 (1267)
T KOG0783|consen  125 FLSRVLSSTIH-PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSG  176 (1267)
T ss_pred             HHhhccccccc-cccCCccceeEecccccccccccCCCCCCChHHhHHHHhcc
Confidence            77653322222 112222333333334444555554433  567777766444

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.70  E-value=4.7e-08  Score=91.30  Aligned_cols=92  Identities=29%  Similarity=0.394  Sum_probs=81.7

Q ss_pred             hhHHHhhccCCHHHHHHHHHcCCC--cc--ccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcC
Q 015680          192 LRFNSAAYHGDLYQLKGLIRAGAD--LN--KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  267 (403)
Q Consensus       192 ~~l~~a~~~~~~~~~~~ll~~~~~--~~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~  267 (403)
                      ..|..|+...++..+-.||.+|-.  +|  +.+..|+|+||+||..|++.+.++|+=+|+|+..+|..|+|+|.||-+.|
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence            357889999999999999999833  44  34577899999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHcCCCcc
Q 015680          268 HDGVTSLLVKEGASLN  283 (403)
Q Consensus       268 ~~~~v~~L~~~~~~~~  283 (403)
                      ..+++..|+.+|+...
T Consensus       706 sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPDE  721 (749)
T ss_pred             cHHHHHHHHHcCCCcc
Confidence            9999999999987543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.66  E-value=2e-08  Score=97.55  Aligned_cols=84  Identities=26%  Similarity=0.264  Sum_probs=77.8

Q ss_pred             cCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccC-CCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHH
Q 015680          183 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL  261 (403)
Q Consensus       183 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~  261 (403)
                      .+..|..|+++||.|+..+..++++|||.+|++++.+| ..|+||||-|+..|+++++-.|+.+|..+..+|+.|.+||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            34567889999999999999999999999999999988 66999999999999999999999999999999999999999


Q ss_pred             HHHHc
Q 015680          262 EAIKC  266 (403)
Q Consensus       262 ~A~~~  266 (403)
                      +-++-
T Consensus       125 ~~~r~  129 (1267)
T KOG0783|consen  125 FLSRV  129 (1267)
T ss_pred             HHhhc
Confidence            88773

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.65  E-value=4.3e-08  Score=57.27  Aligned_cols=31  Identities=48%  Similarity=0.872  Sum_probs=21.9

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCCcCC
Q 015680          223 GRSPLHLATSRGYEDITLFLIQKGVDINIKD  253 (403)
Q Consensus       223 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  253 (403)
                      |.||||+|+..|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5677777777777777777777777776655

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.64  E-value=8.2e-08  Score=89.19  Aligned_cols=87  Identities=37%  Similarity=0.405  Sum_probs=66.4

Q ss_pred             hHHHHHHcCCHHHHHHHH--HCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHH
Q 015680          290 FLCIAVARGDSDLLKRVL--SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN  367 (403)
Q Consensus       290 ~l~~a~~~~~~~~v~~Ll--~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~  367 (403)
                      |+|+++.....+-.+.++  +....++..|..|+||||+|+..|+.+.++.|+.+|+|+..+|+.|.+|||.|+..|+.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            477777777766554433  233456777888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHcc
Q 015680          368 LIKLLEDAK  376 (403)
Q Consensus       368 ~v~~Ll~~~  376 (403)
                      ++.-++.+.
T Consensus       103 ~i~~vlr~~  111 (560)
T KOG0522|consen  103 IITEVLRHL  111 (560)
T ss_pred             HHHHHHHHh
Confidence            887776654

>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]

Probab=98.62  E-value=2.9e-08  Score=97.29  Aligned_cols=134  Identities=25%  Similarity=0.307  Sum_probs=112.0

Q ss_pred             HHHHhHHhhhccCCC---------CCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCee
Q 015680           32 SQTLYMPYIEKVSLF---------KGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEE  102 (403)
Q Consensus        32 ~~~~~~~~l~~~~~f---------~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~  102 (403)
                      .+.-+++++.+-|+.         ..+ +..+..+--.+....+.+|+.+|++||.++++|+|++|+++......+|+..
T Consensus       471 srs~l~~~~~~~p~I~L~ia~svl~~l-sp~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~  549 (1158)
T KOG2968|consen  471 SRSDLERFLDAEPLIYLRIAHSVLRRL-SPFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKE  549 (1158)
T ss_pred             eHHHHHHHHHhCceEEEehhhHHHHhc-CHHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccch
Confidence            444555566655521         122 3344555566788999999999999999999999999999999877777777


Q ss_pred             EeeeecCCCcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhcc
Q 015680          103 TVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEGK  166 (403)
Q Consensus       103 ~~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~~  166 (403)
                      ++..+..|+++|++.+++..++..++.|+.++++.+||...|.-+-.++|+...++.+.+.+..
T Consensus       550 i~~EygrGd~iG~~E~lt~~~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~  613 (1158)
T KOG2968|consen  550 IVGEYGRGDLIGEVEMLTKQPRATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI  613 (1158)
T ss_pred             hhhhccCcceeehhHHhhcCCccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999888877777654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.54  E-value=2.2e-07  Score=86.37  Aligned_cols=87  Identities=28%  Similarity=0.433  Sum_probs=77.4

Q ss_pred             hhHHHhhccCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCCh
Q 015680          192 LRFNSAAYHGDLYQLKGLIRA--GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  269 (403)
Q Consensus       192 ~~l~~a~~~~~~~~~~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  269 (403)
                      .|+|+++...+.+.+...+..  ...++..|..|+||||+|+..|+.+.++.|+.+|+++..+|+.|++|||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            569999999998888876543  355788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc
Q 015680          270 GVTSLLVKE  278 (403)
Q Consensus       270 ~~v~~L~~~  278 (403)
                      +++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            888777765

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.53  E-value=4.3e-07  Score=89.30  Aligned_cols=119  Identities=20%  Similarity=0.186  Sum_probs=88.6

Q ss_pred             hhhHHHhhccCCHHHHHHHHHcC----CCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHc
Q 015680          191 ALRFNSAAYHGDLYQLKGLIRAG----ADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  266 (403)
Q Consensus       191 ~~~l~~a~~~~~~~~~~~ll~~~----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~  266 (403)
                      ...+..|+..|++..|+.+++..    .++|+.|.-|+++|++|+.+.+.+++++|++.+...       ..+|.+|++.
T Consensus        26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~   98 (822)
T KOG3609|consen   26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAV   98 (822)
T ss_pred             hHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHH
Confidence            34467899999999999999753    457888999999999999999999999999986544       3488899999


Q ss_pred             CChHHHHHHHHcCCCccc------------cCCCchHHHHHHcCCHHHHHHHHHCCCCCCCC
Q 015680          267 GHDGVTSLLVKEGASLNV------------DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR  316 (403)
Q Consensus       267 ~~~~~v~~L~~~~~~~~~------------~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~  316 (403)
                      |..+.|+.++.+......            .-+-||+.+||..++.||++.|+++|+.+...
T Consensus        99 ~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   99 GSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            999999999987443211            11225666666666666666666666655433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.50  E-value=3.7e-07  Score=73.75  Aligned_cols=76  Identities=22%  Similarity=0.122  Sum_probs=69.0

Q ss_pred             CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcC-CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccccccc
Q 015680          310 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG-ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHY  385 (403)
Q Consensus       310 ~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g-~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  385 (403)
                      +.++|.+|..|+||++.|+..|+.+.+.||+.+| +++-..|..|.+++.+|-+.|+.+.|+.|.++..+...+.+-
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~ns   78 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNS   78 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcccC
Confidence            4578999999999999999999999999999999 999999999999999999999999999999997765555444

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.48  E-value=7.9e-07  Score=87.49  Aligned_cols=121  Identities=25%  Similarity=0.304  Sum_probs=85.1

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhcC----CCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccCCCchHHHHHH
Q 015680          221 YDGRSPLHLATSRGYEDITLFLIQKG----VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVA  296 (403)
Q Consensus       221 ~~g~t~L~~A~~~~~~~~~~~Ll~~~----~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~l~~a~~  296 (403)
                      ..+.--...|+..|+...|+..++..    .++|..|.-|+++++.|+.+-+.++.++|++++...     ..+|-+|+.
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-----gdALL~aI~   97 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-----GDALLLAIA   97 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-----chHHHHHHH
Confidence            33445677899999999999888743    468889999999999999999999999999886554     457888888


Q ss_pred             cCCHHHHHHHHHCCCCCC----------CCCCCCChHHHHHHHcCcHHHHHHHHHcCCCc
Q 015680          297 RGDSDLLKRVLSNGVDPN----------SRDYDHRTPLHVAASEGLYLMAKLLLEAGASV  346 (403)
Q Consensus       297 ~~~~~~v~~Ll~~~~~~~----------~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~  346 (403)
                      .|..+.|+.++.+.....          ..-..+-||+.+||..++.||+++|+++|+++
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence            888888888886532221          11122445555555555555555555555554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.44  E-value=1.5e-07  Score=94.96  Aligned_cols=90  Identities=39%  Similarity=0.463  Sum_probs=85.0

Q ss_pred             CCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCC
Q 015680          286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN  365 (403)
Q Consensus       286 ~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~  365 (403)
                      .+.+++|.|+..+..-+.+.|+++|+++|..|..|+||+|.+...|+...+..|+++|++++..+.+|.+|+++|....+
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHc
Q 015680          366 KNLIKLLEDA  375 (403)
Q Consensus       366 ~~~v~~Ll~~  375 (403)
                      .+++-++...
T Consensus       735 ~d~~~l~~l~  744 (785)
T KOG0521|consen  735 ADIVLLLRLA  744 (785)
T ss_pred             ccHHHHHhhh
Confidence            8888877655

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.16  E-value=1e-05  Score=72.42  Aligned_cols=56  Identities=38%  Similarity=0.490  Sum_probs=30.8

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCc
Q 015680          291 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV  346 (403)
Q Consensus       291 l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~  346 (403)
                      |+.||+.|+.+.++.|++.|.++|.+|..-.+||.+|+..|+.++|++|+++||--
T Consensus        40 lceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC   95 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC   95 (516)
T ss_pred             HHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            55555555555555555555555555555555555555555555555555555433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.13  E-value=6.7e-06  Score=73.50  Aligned_cols=74  Identities=24%  Similarity=0.276  Sum_probs=61.7

Q ss_pred             hhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHc
Q 015680          192 LRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  266 (403)
Q Consensus       192 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~  266 (403)
                      ..|..||+.|+.+.+++|++.|.++|..|....+||.+|+..||.++|++|+++|+-...-...|.. .|+++.+
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~R-C~YgaLn  111 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDR-CHYGALN  111 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcch-hhhhhhh
Confidence            3488999999999999999999999999999999999999999999999999999865433333443 3455544

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.11  E-value=9e-06  Score=65.90  Aligned_cols=67  Identities=19%  Similarity=0.256  Sum_probs=58.7

Q ss_pred             CCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcC-CCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcC
Q 015680          213 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG  279 (403)
Q Consensus       213 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~  279 (403)
                      +.++|.+|..|+|||+.|+..|+.+.+.||+..| +.+...|..|.+++.+|-+.|..+++..|-+..
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            4578888999999999999999999999999998 788888999999999999999999988888763

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.05  E-value=7.1e-06  Score=83.04  Aligned_cols=84  Identities=32%  Similarity=0.432  Sum_probs=45.4

Q ss_pred             CCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcH
Q 015680          256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLY  333 (403)
Q Consensus       256 g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~  333 (403)
                      |.|+||.|+..|...++++|+.+|+++|..+  |++|+|.+...|+...+..|+++|++.+..+..|.+||++|....+.
T Consensus       656 ~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~  735 (785)
T KOG0521|consen  656 GCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAANA  735 (785)
T ss_pred             ccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhccc
Confidence            4455555555555555555555555554443  44555555555555555555555566666666666666666555544


Q ss_pred             HHHHHH
Q 015680          334 LMAKLL  339 (403)
Q Consensus       334 ~~~~~L  339 (403)
                      +++-++
T Consensus       736 d~~~l~  741 (785)
T KOG0521|consen  736 DIVLLL  741 (785)
T ss_pred             cHHHHH
Confidence            444333

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.02  E-value=1.6e-05  Score=80.19  Aligned_cols=123  Identities=20%  Similarity=0.201  Sum_probs=70.0

Q ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHhc-CCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccc--cCCCchHHHHH
Q 015680          219 TDYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV--DDAGSFLCIAV  295 (403)
Q Consensus       219 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~--~~~~~~l~~a~  295 (403)
                      ....|+|-+|+++..+..-.++.+++. |......|..|...+|+++..|....+....-.|..++.  ..|+||||||+
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa  649 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAA  649 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHh
Confidence            344566677777766666666666664 444444555566666664444433333222223333333  33666777777


Q ss_pred             HcCCHHHHHHHHHCCCCC------CCCCCCCChHHHHHHHcCcHHHHHHHHH
Q 015680          296 ARGDSDLLKRVLSNGVDP------NSRDYDHRTPLHVAASEGLYLMAKLLLE  341 (403)
Q Consensus       296 ~~~~~~~v~~Ll~~~~~~------~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~  341 (403)
                      .+|+..++..|++.|++.      +..+..|.|+-.+|-.+|+.++..+|-+
T Consensus       650 ~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  650 FRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             hcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            777777777776665542      2233456777777777777666666654

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.01  E-value=6.7e-06  Score=82.87  Aligned_cols=126  Identities=21%  Similarity=0.122  Sum_probs=102.5

Q ss_pred             CCcCCCCCCcHHHHHHHcCChHHHHHHHHc-C--CCccccCCCchHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCChHH
Q 015680          249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKE-G--ASLNVDDAGSFLCIAVARGDSDLLKRVL-SNGVDPNSRDYDHRTPL  324 (403)
Q Consensus       249 ~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~-~--~~~~~~~~~~~l~~a~~~~~~~~v~~Ll-~~~~~~~~~~~~g~t~L  324 (403)
                      .......|++-+|+++..+....++.+++- +  ......++.+-+|. |..++.+++-+|+ -.|..++.+|.+|+|||
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPL  645 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCccc
Confidence            444556799999999999999999998884 3  33444667788888 7777777766665 46788999999999999


Q ss_pred             HHHHHcCcHHHHHHHHHcCCCcc------cCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 015680          325 HVAASEGLYLMAKLLLEAGASVF------TKDRWGNTPLDEGRMCGNKNLIKLLEDA  375 (403)
Q Consensus       325 h~A~~~~~~~~~~~Ll~~g~d~~------~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  375 (403)
                      |+|+..|+..++..|++.|++..      ..+-.|.|+-.+|..+|+..+.-+|-+.
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999999998776543      3334699999999999999999988877

>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle

Probab=97.87  E-value=0.00039  Score=54.79  Aligned_cols=111  Identities=16%  Similarity=0.091  Sum_probs=89.0

Q ss_pred             CCCHHHHHHHHHH-hheeeeCCCCeEEecCCcc-CeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccC----
Q 015680           48 GCSSEFINQIVIR-LHEEFFLPGEVIMEQGNVI-DQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCN----  121 (403)
Q Consensus        48 ~l~~~~~~~l~~~-~~~~~~~~ge~i~~~g~~~-~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~----  121 (403)
                      ..+..+++++... .......+|+.-..||... +.+.+++||++++..     +.+.+..+.|..+.....+...    
T Consensus        14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~-----~g~fLH~I~p~qFlDSPEW~s~~~s~   88 (153)
T PF04831_consen   14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC-----DGRFLHYIYPYQFLDSPEWESLRPSE   88 (153)
T ss_pred             CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE-----CCEeeEeecccccccChhhhccccCC
Confidence            5788999999977 6899999999998888766 799999999999987     3457888888888876665433    


Q ss_pred             -CCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhh
Q 015680          122 -IPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLE  164 (403)
Q Consensus       122 -~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~  164 (403)
                       .....+++|.++|..+.++++.+.-++...+.... ++..++-
T Consensus        89 ~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~-vF~~liG  131 (153)
T PF04831_consen   89 DDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAA-VFSNLIG  131 (153)
T ss_pred             CCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHH-HHHHHHH
Confidence             34578999999999999999999999888765533 3344433

It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane

>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]

Probab=97.55  E-value=0.00013  Score=72.45  Aligned_cols=107  Identities=21%  Similarity=0.277  Sum_probs=90.7

Q ss_pred             HHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCccccc-cc---ccCCC---cceeEEE
Q 015680           58 VIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV-SI---LCNIP---QPYTVRI  130 (403)
Q Consensus        58 ~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~-~l---l~~~~---~~~~~~a  130 (403)
                      ..+++...+..|++|+.+|++.+.+|++.+|.++++....+|++..+....+|+.|-.. ++   +.+.|   ....+.|
T Consensus       112 ~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd~l~~~ps~~~~i~akA  191 (1158)
T KOG2968|consen  112 DRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILDSLPGFPSLSRTIAAKA  191 (1158)
T ss_pred             chhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHHhccCCCcccceeeeee
Confidence            37788899999999999999999999999999999999999999999999999755332 22   23333   3467899


Q ss_pred             eccceeeeechHhHHHHHHHHhhcchHHHHHhhh
Q 015680          131 CELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLE  164 (403)
Q Consensus       131 ~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~  164 (403)
                      .++|++..++...|....+.+|....++++..+.
T Consensus       192 ~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmT  225 (1158)
T KOG2968|consen  192 ATDCTVARIPYTSFRESFHKNPESSIRIIQVVMT  225 (1158)
T ss_pred             ecCceEEEeccchhhhhhccChHHHHHHHHHHHH
Confidence            9999999999999999999999988777766654

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.50  E-value=0.00019  Score=66.71  Aligned_cols=63  Identities=33%  Similarity=0.394  Sum_probs=55.2

Q ss_pred             CHHHHHHHHHCCCCCC------CCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHH
Q 015680          299 DSDLLKRVLSNGVDPN------SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR  361 (403)
Q Consensus       299 ~~~~v~~Ll~~~~~~~------~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~  361 (403)
                      -...|++|.+++.+.|      ..++.--|+||+|+..|.-++|.+|+++|+|+..+|..|.||+++++
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            3678899988877654      33455789999999999999999999999999999999999999998

>PRK11832 putative DNA-binding transcriptional regulator; Provisional

Probab=97.35  E-value=0.0032  Score=53.20  Aligned_cols=103  Identities=11%  Similarity=0.005  Sum_probs=77.7

Q ss_pred             HHHHHHHhheeeeCCCCeE-EecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccCCCcceeEEEec
Q 015680           54 INQIVIRLHEEFFLPGEVI-MEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICE  132 (403)
Q Consensus        54 ~~~l~~~~~~~~~~~ge~i-~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~~~~~~~a~~  132 (403)
                      ++.+...++.+.+++|..+ +.+......+|++++|.|.+.+  .+|  ..+....+..+||-..........+...|.+
T Consensus        15 ~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr--~d~--ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~   90 (207)
T PRK11832         15 DKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR--EEN--VLIGITQAPYIMGLADGLMKNDIPYKLISEG   90 (207)
T ss_pred             HHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe--cCC--eEEEeccCCeEeecccccCCCCceEEEEEcC
Confidence            4556677789999999997 5444444789999999999942  333  5677778888999877666555557899999


Q ss_pred             cceeeeechHhHHHHHHHHhhcchHHHHH
Q 015680          133 LSRLLRIDKQSFTSILEIYFCDGRKVLTN  161 (403)
Q Consensus       133 ~~~~~~i~~~~~~~l~~~~~~~~~~ll~~  161 (403)
                      +|+...++.+.|.+++.+. .....+...
T Consensus        91 ~c~~~~i~~~~~~~iie~~-~LW~~~~~~  118 (207)
T PRK11832         91 NCTGYHLPAKQTITLIEQN-QLWRDAFYW  118 (207)
T ss_pred             ccEEEEeeHHHHHHHHHHh-chHHHHHHH
Confidence            9999999999999999875 344444333

>smart00248 ANK ankyrin repeats

Probab=97.01  E-value=0.0012  Score=36.10  Aligned_cols=27  Identities=52%  Similarity=0.786  Sum_probs=14.2

Q ss_pred             CChHHHHHHHcCcHHHHHHHHHcCCCc
Q 015680          320 HRTPLHVAASEGLYLMAKLLLEAGASV  346 (403)
Q Consensus       320 g~t~Lh~A~~~~~~~~~~~Ll~~g~d~  346 (403)
                      |.||+|+|+..++.+++++|++.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            445555555555555555555554433

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.77  E-value=0.0027  Score=34.56  Aligned_cols=27  Identities=48%  Similarity=0.892  Sum_probs=15.0

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCC
Q 015680          223 GRSPLHLATSRGYEDITLFLIQKGVDI  249 (403)
Q Consensus       223 g~t~L~~A~~~~~~~~~~~Ll~~~~~~  249 (403)
                      |.||+|+|+..++.+++++|++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            445555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.65  E-value=0.0025  Score=59.63  Aligned_cols=62  Identities=24%  Similarity=0.291  Sum_probs=47.6

Q ss_pred             HHHHHHHHHcCCCcccc------CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHH
Q 015680          203 LYQLKGLIRAGADLNKT------DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  264 (403)
Q Consensus       203 ~~~~~~ll~~~~~~~~~------~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~  264 (403)
                      ...+.+|.+.+++.|..      +..--|+||+|+.+|.-++|.+||+.|+|+-.+|..|.||..+++
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            45566677766554322      233457899999999999999999999999999999999998876

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.02  E-value=0.059  Score=45.55  Aligned_cols=89  Identities=19%  Similarity=0.246  Sum_probs=58.1

Q ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCCCCCCC----CChHHHHHHHc--CcHHHHHHHHHcC-CCcc---cCCCCCCCHHH
Q 015680          289 SFLCIAVARGDSDLLKRVLSNGVDPNSRDYD----HRTPLHVAASE--GLYLMAKLLLEAG-ASVF---TKDRWGNTPLD  358 (403)
Q Consensus       289 ~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~----g~t~Lh~A~~~--~~~~~~~~Ll~~g-~d~~---~~~~~g~t~l~  358 (403)
                      +++-++..++.-+++-+|+.+ ++...+|.-    +.--+-++.+.  .+..++++++.+| +++|   .+-+.|.|-|+
T Consensus       181 ~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLD  259 (284)
T PF06128_consen  181 QAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLD  259 (284)
T ss_pred             HHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHH
Confidence            445566666666666666643 222222211    11123344333  3678899999988 4554   44567999999


Q ss_pred             HHHHcCCHHHHHHHHHcccc
Q 015680          359 EGRMCGNKNLIKLLEDAKCT  378 (403)
Q Consensus       359 ~A~~~~~~~~v~~Ll~~~~~  378 (403)
                      -|.+.++.+++.+|+++||-
T Consensus       260 NA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  260 NAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             hHHhcCcHHHHHHHHHcCcc
Confidence            99999999999999999983

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.93  E-value=0.071  Score=43.71  Aligned_cols=44  Identities=20%  Similarity=0.258  Sum_probs=32.1

Q ss_pred             HHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 015680          324 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE  373 (403)
Q Consensus       324 Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  373 (403)
                      |..|+..|....+.-.+++|.+++.      ++|-.|+..++.+|+.+++
T Consensus       147 l~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhh
Confidence            5677777777777777777766632      5777788888877777765

These proteins may be involved in promoting survival of infected macrophages [].

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=95.87  E-value=0.044  Score=53.42  Aligned_cols=116  Identities=16%  Similarity=0.256  Sum_probs=89.8

Q ss_pred             HHhHHhhhccCCCCCCCHHHHHHHHHHhh-eeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCc
Q 015680           34 TLYMPYIEKVSLFKGCSSEFINQIVIRLH-EEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSS  112 (403)
Q Consensus        34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~-~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~  112 (403)
                      +..+++.-+.|-|.+++-....+++..+. ...=.+|.+|...|+.-+.-++|+.|.|.+.+  ++|+..   .+.-|+.
T Consensus       277 eqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~--PdGk~e---~l~mGnS  351 (1283)
T KOG3542|consen  277 EQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVK--PDGKRE---ELKMGNS  351 (1283)
T ss_pred             HHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEec--CCCceE---Eeecccc
Confidence            35678889999999999999888887663 34446899999999999999999999999986  556544   5567889


Q ss_pred             ccccccccCCCcceeE-EEeccceeeeechHhHHHHHHHHhhc
Q 015680          113 FGEVSILCNIPQPYTV-RICELSRLLRIDKQSFTSILEIYFCD  154 (403)
Q Consensus       113 ~g~~~ll~~~~~~~~~-~a~~~~~~~~i~~~~~~~l~~~~~~~  154 (403)
                      ||.......+.-.... +-+.+|++.+|..+++-.++......
T Consensus       352 FG~~PT~dkqym~G~mRTkVDDCqFVciaqqDycrIln~vekn  394 (1283)
T KOG3542|consen  352 FGAEPTPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILNTVEKN  394 (1283)
T ss_pred             cCCCCCcchhhhhhhhheecccceEEEeehhhHHHHHHHHHhh
Confidence            9987765544333333 34568999999999999988765443

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=95.03  E-value=0.046  Score=53.34  Aligned_cols=105  Identities=12%  Similarity=0.106  Sum_probs=79.7

Q ss_pred             ecChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeE
Q 015680           24 RLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEET  103 (403)
Q Consensus        24 ~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~  103 (403)
                      ++.++...-..-.+..|.+...|.+|-...++.+........++...++|+.|+...+-|++++|.|-+.-         
T Consensus        23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g---------   93 (1283)
T KOG3542|consen   23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG---------   93 (1283)
T ss_pred             CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec---------
Confidence            44444443333445688899999999999999999999999999999999999999999999999997642         


Q ss_pred             eeeecCCCcccccccccCCCcceeEEEeccceeeeech
Q 015680          104 VSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDK  141 (403)
Q Consensus       104 ~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~  141 (403)
                       ..+-|-..||..   .+..+..++..+++++..+++.
T Consensus        94 -qi~mp~~~fgkr---~g~~r~~nclllq~semivid~  127 (1283)
T KOG3542|consen   94 -QIYMPYGCFGKR---TGQNRTHNCLLLQESEMIVIDY  127 (1283)
T ss_pred             -ceecCccccccc---cccccccceeeecccceeeeec
Confidence             223344456543   2455778888888888887743

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.92  E-value=0.22  Score=42.25  Aligned_cols=111  Identities=16%  Similarity=0.259  Sum_probs=62.3

Q ss_pred             HHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCC----CCCCcHHHHHHHcC--
Q 015680          194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD----KFGNTPLLEAIKCG--  267 (403)
Q Consensus       194 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~----~~g~t~l~~A~~~~--  267 (403)
                      |--|+...+.+.+..+....       ..-.+++-+|+..+..+++-+|+.+ .+...+|    +.+.--+.++.+..  
T Consensus       157 ledAV~AsN~~~i~~~VtdK-------kdA~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~LS~h~a  228 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDK-------KDAHQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLLSEHSA  228 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcch-------HHHHHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHHhhcCC
Confidence            44566666666655444321       1123566666666666777777663 1111111    11222344444322  


Q ss_pred             ChHHHHHHHHcC-CCccc-----cCCCchHHHHHHcCCHHHHHHHHHCCCC
Q 015680          268 HDGVTSLLVKEG-ASLNV-----DDAGSFLCIAVARGDSDLLKRVLSNGVD  312 (403)
Q Consensus       268 ~~~~v~~L~~~~-~~~~~-----~~~~~~l~~a~~~~~~~~v~~Ll~~~~~  312 (403)
                      +..++++.+++| .++|.     ..|.|.|--|...++.+|+..|+++|+-
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            456777777776 45553     2366777788888888888888887763

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.75  E-value=0.65  Score=38.25  Aligned_cols=136  Identities=17%  Similarity=0.069  Sum_probs=91.0

Q ss_pred             hhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHH
Q 015680          192 LRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  271 (403)
Q Consensus       192 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~  271 (403)
                      -.+..|+..+-..++++.-+...+-   -..+++-+-.||...++++|+|+-+   ++...  +-.+-+-.|....+.+.
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~q---nL~i~--~~~~iFdIA~~~kDlsL  119 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQ---NLHIY--NPEDIFDIAFAKKDLSL  119 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhh---ccCCC--CchhhhhhhhhccchhH
Confidence            3577888888888888776543111   1244567788999999999999833   33322  23456777888777664


Q ss_pred             H----HHHHHcCCCccccCCC----chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHH
Q 015680          272 T----SLLVKEGASLNVDDAG----SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE  341 (403)
Q Consensus       272 v----~~L~~~~~~~~~~~~~----~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~  341 (403)
                      .    +.+.++..+-...|-.    .-|.+|+..|-..-+-..+++|-+++.      +.|..|+..++-.++.+++.
T Consensus       120 yslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  120 YSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            2    3333332221111111    238889999999988888898876643      78999999999999988875

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=91.06  E-value=0.38  Score=33.81  Aligned_cols=46  Identities=17%  Similarity=0.163  Sum_probs=20.7

Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 015680          323 PLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA  375 (403)
Q Consensus       323 ~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  375 (403)
                      .+..|+..|+.++++.+++.+ .++      ...+..|+...+-++++||+++
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            344455555555555444432 110      1234555555555555555444

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=87.28  E-value=1.3  Score=31.15  Aligned_cols=15  Identities=20%  Similarity=0.031  Sum_probs=5.5

Q ss_pred             HHHHHcCcHHHHHHH
Q 015680          325 HVAASEGLYLMAKLL  339 (403)
Q Consensus       325 h~A~~~~~~~~~~~L  339 (403)
                      ..|+...+.+++++|
T Consensus        37 ~~AI~~H~n~i~~~l   51 (76)
T PF11929_consen   37 EYAIKSHNNEIADWL   51 (76)
T ss_pred             HHHHHHhhHHHHHHH
Confidence            333333333333333

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	403
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-29
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-28
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-28
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-26
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-24
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-21
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-21
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		4e-21
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-11
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-20
1uoh_A	226	Human Gankyrin Length = 226		3e-19
1uoh_A	226	Human Gankyrin Length = 226		7e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		4e-19
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		6e-19
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		9e-19
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-18
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-18
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		8e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		6e-18
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-17
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-16
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-07
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-17
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-17
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		5e-17
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		7e-17
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-16
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-16
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-16
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-07
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-16
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		5e-16
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		6e-16
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-05
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		7e-16
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		8e-16
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		8e-16
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-05
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-15
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-15
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-14
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		8e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-14
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		5e-11
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-14
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		4e-14
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		3e-11
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-14
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		6e-11
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-10
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-13
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-13
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		3e-12
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		5e-12
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-09
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		5e-12
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		1e-11
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		2e-11
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-11
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		2e-11
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		4e-11
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		4e-11
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		7e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		4e-11
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		1e-10
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		1e-10
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-10
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-10
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-10
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-09
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		4e-10
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		5e-10
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		5e-10
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		6e-10
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		9e-10
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-09
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		9e-05
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		2e-09
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		6e-07
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-09
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-09
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		7e-09
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		3e-08
3so8_A	162	Crystal Structure Of Ankra Length = 162		8e-09
3so8_A	162	Crystal Structure Of Ankra Length = 162		3e-08
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		8e-09
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		3e-08
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		9e-09
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		5e-06
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		9e-09
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		1e-08
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		2e-08
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		7e-06
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-08
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-08
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		2e-08
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		4e-06
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		2e-08
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		1e-07
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		3e-08
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		9e-08
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		3e-08
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		5e-08
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		4e-06
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-07
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-07
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		3e-07
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		8e-07
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		9e-07
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		9e-07
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		9e-07
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		1e-06
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		3e-06
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		1e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		6e-06
1ycs_B	239	P53-53bp2 Complex Length = 239		9e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		6e-06
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		1e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		1e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		1e-05
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		2e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		3e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		5e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		7e-05
3etq_A	204	X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2		8e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		1e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		4e-04
3otf_A	220	Structural Basis For The Camp-Dependent Gating In H		1e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		2e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		5e-04
1d9s_A	136	Tumor Suppressor P15(Ink4b) Structure By Comparativ		2e-04
3ljn_A	364	Ankyrin Repeat Protein From Leishmania Major Length		3e-04
1bi7_B	156	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		4e-04
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		4e-04

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 96/186 (51%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
           +EL  R   AA +G+  ++K LI  GAD+N +D DGR+PLH A   G++++   LI KG 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
           D+N KD  G TPL  A + GH  V  LL+                               
Sbjct: 62  DVNAKDSDGRTPLHHAAENGHKEVVKLLI------------------------------- 90
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
           S G D N++D D RTPLH AA  G   + KLL+  GA V T D  G TPLD  R  GN+ 
Sbjct: 91  SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEE 150
Query: 368 LIKLLE 373
           ++KLLE
Sbjct: 151 VVKLLE 156

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 97/186 (52%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
           +EL  R   AA +G+  ++K L+  GAD+N +D DG++PLHLA   G++++   L+ +G 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
           D N KD  G TPL  A + GH  V  LL                               L
Sbjct: 62  DPNAKDSDGKTPLHLAAENGHKEVVKLL-------------------------------L 90
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
           S G DPN++D D +TPLH+AA  G   + KLLL  GA   T D  G TPLD  R  GN+ 
Sbjct: 91  SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEE 150
Query: 368 LIKLLE 373
           ++KLLE
Sbjct: 151 VVKLLE 156

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score =  122 bits (306), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 94/186 (50%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
           +EL  R   AA +G+  ++K L+  GAD N +D DGR+PLH A   G+++I   L+ KG 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
           D N KD  G TPL  A + GH  +  LL                               L
Sbjct: 62  DPNAKDSDGRTPLHYAAENGHKEIVKLL-------------------------------L 90
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
           S G DPN++D D RTPLH AA  G   + KLLL  GA   T D  G TPLD  R  GN+ 
Sbjct: 91  SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEE 150
Query: 368 LIKLLE 373
           ++KLLE
Sbjct: 151 IVKLLE 156

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score =  115 bits (288), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 92/159 (57%), Gaps = 2/159 (1%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
           +EL  R   AA +G+  ++K LI  GAD+N +D DGR+PLH A   G+++I   LI KG 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKR 305
           D+N KD  G TPL  A K GH  +  LL+ +GA +N  D+   + L  A   G  +++K 
Sbjct: 62  DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 306 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 344
           ++S G D N+ D D RTPL +A   G   + KLL + G 
Sbjct: 122 LISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG- 288
           A   G +D    LI+ G D+N  D  G TPL  A K GH  +  LL+ +GA +N  D+  
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 289 -SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 347
            + L  A   G  +++K ++S G D N++D D RTPLH AA EG   + KLL+  GA V 
Sbjct: 71  RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Query: 348 TKDRWGNTPLDEGRMCGNKNLIKLLE 373
           T D  G TPLD  R  GN+ ++KLLE
Sbjct: 131 TSDSDGRTPLDLAREHGNEEIVKLLE 156

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 31/187 (16%)
Query: 189 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 248
           +L  +   AA  G   +++ L+  GAD+N  D DG +PLHLA   G+ +I   L++ G D
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS 308
           +N KDK G TPL  A + GH  +  +L+K GA                            
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA---------------------------- 92
Query: 309 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 368
              D N++D D  TPLH+AA EG   + ++LL+AGA V  +D++G TP D     GN+++
Sbjct: 93  ---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDI 149
Query: 369 IKLLEDA 375
            ++L+ A
Sbjct: 150 AEVLQKA 156

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 97/187 (51%), Gaps = 31/187 (16%)
Query: 189 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 248
           +L  +   AA  G   +++ L+  GAD+N  D DG +PLHLA   G+ +I   L++ G D
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS 308
           +N KDK G TPL  A + GH  +  +L+K GA                            
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA---------------------------- 92
Query: 309 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 368
              D N++D D  TPLH+AA EG   + ++LL+AGA V  +D++G TP D     G++++
Sbjct: 93  ---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDI 149
Query: 369 IKLLEDA 375
            ++L+ A
Sbjct: 150 AEVLQKA 156

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 222 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 281
           +GR+PLHLA   G+ ++   L++ G D+N KDK G TPL  A + GH  V  LL++ GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 282 LNVDDAG--SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 339
           +N  D    + L +A   G  +++K +L  G D N++D + RTPLH+AA  G   + KLL
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 340 LEAGA 344
           LEAGA
Sbjct: 121 LEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 291 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 350
           L +A   G  +++K +L  G D N++D + RTPLH+AA  G   + KLLLEAGA V  KD
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 351 RWGNTPLDEGRMCGNKNLIKLLEDA 375
           + G TPL      G+  ++KLL +A
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEA 90

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 96/186 (51%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
           ++L  +   AA  G   +++ L+  GAD+N  D DG +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
           D+N KDK G TPL  A + GH  +  +L+K GA                           
Sbjct: 72  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--------------------------- 104
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
               D N++D D  TPLH+AA EG   + ++LL+AGA V  +D++G T  D     GN++
Sbjct: 105 ----DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNED 160
Query: 368 LIKLLE 373
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 94/172 (54%), Gaps = 7/172 (4%)
Query: 198 AYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AY G L +LK  I A   L  +TD D R+ LH A S G+ +I  FL+Q GV +N KD  G
Sbjct: 14  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPN 314
            +PL  A   G D +   L+ +GA +N V+  G + L  A ++   ++   +L  G +P+
Sbjct: 74  WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRM 362
           ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL    DE R+
Sbjct: 134 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERV 185

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 273 SLLVKEGASLNVD-DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEG 331
           S+L  +  +   D D+ + L  A + G +++++ +L  GV  N +D    +PLH+AAS G
Sbjct: 25  SILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84
Query: 332 LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGM 390
              + K LL  GA V   ++ G TPL          +  +L +      ++ HY +  M
Sbjct: 85  RDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAM 143

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 94/172 (54%), Gaps = 7/172 (4%)
Query: 198 AYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AY G L +LK  I A   L  +TD D R+ LH A S G+ +I  FL+Q GV +N KD  G
Sbjct: 15  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 74
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPN 314
            +PL  A   G D +   L+ +GA +N V+  G + L  A ++   ++   +L  G +P+
Sbjct: 75  WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 134
Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRM 362
           ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL    DE R+
Sbjct: 135 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERV 186

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 95/186 (51%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
           ++L  +   AA  G   +++ L+  GAD+N TD+ G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
           D+N  D +G TPL  A   GH  +  +L+K GA                           
Sbjct: 72  DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGA--------------------------- 104
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
               D N++DY+  TPLH+AA +G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 105 ----DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 368 LIKLLE 373
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/179 (36%), Positives = 97/179 (54%), Gaps = 7/179 (3%)
Query: 198 AYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AY G L +LK  I A   L  +TD D R+ LH A S G+ +I  FL+Q GV +N KD  G
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPN 314
            +PL  A   G D +   L+ +GA +N V+  G + L  A ++   ++   +L  G +P+
Sbjct: 74  WSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRMCGNKNLI 369
           ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL    DE R+   K L+
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
           ++L  +   AA  G   +++ L+  GAD+N TD DG +PLHLA S G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
           D+N  D  G TPL  A   GH  +  +L+K GA                           
Sbjct: 72  DVNASDLTGITPLHLAAATGHLEIVEVLLKHGA--------------------------- 104
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
               D N+ D D  TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 105 ----DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 368 LIKLLE 373
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/179 (36%), Positives = 97/179 (54%), Gaps = 7/179 (3%)
Query: 198 AYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AY G L +LK  I A   L  +TD D R+ LH A S G+ +I  FL+Q GV +N KD  G
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPN 314
            +PL  A   G D +   L+ +GA +N V+  G + L  A ++   ++   +L  G +P+
Sbjct: 74  WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRMCGNKNLI 369
           ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL    DE R+   K L+
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
           D+ + L  A + G +++++ +L  GV  N +D    +PLH+AAS G   + K LL  GA 
Sbjct: 39  DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH 98
Query: 346 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGM 390
           V   ++ G TPL          +  +L +      ++ HY +  M
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAM 143

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
           ++L  +   AA  G   +++ L+  GAD+N  D  G++PLHLA  +G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
           D+N  DK G+TPL  A   GH  +  +L+K GA +N  D   F                 
Sbjct: 72  DVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGF----------------- 114
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
                         TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 115 --------------TPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 368 LIKLLE 373
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 87/154 (56%), Gaps = 2/154 (1%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
           ++L  +   AA  G   +++ L+  GAD+N  D+ G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKR 305
           D+N KD  G TPL  A + GH  +  +L+K GA +N  D+  F  L +A  RG  ++++ 
Sbjct: 72  DVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEV 131
Query: 306 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 339
           +L NG D N++D   +T   ++   G   +A++L
Sbjct: 132 LLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 289
           A   G +D    L+  G D+N +D  G TPL  A   GH  +  +L+K GA +N  D+  
Sbjct: 21  AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 290 F--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 347
              L +A  RG  ++++ +L NG D N+ D    TPLH+AA  G   + ++LL+ GA V 
Sbjct: 81  VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 348 TKDRWGNTPLDEGRMCGNKNLIKLLE 373
            +D++G T  D     GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
           D G  L  A   G  D ++ +++NG D N+RD+   TPLH+AA  G   + ++LL+ GA 
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 346 VFTKDRWGNTPLDEGRMCGNKNLIK-LLEDAKCTQLSEFH 384
           V  KD  G TPL      G+  +++ LL++      S+ H
Sbjct: 73  VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSH 112

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 289
           A   G +D    L+  G D+N  D  G TPL  A   GH  +  +L+K GA +N DD+  
Sbjct: 21  AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 290 F--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 347
              L +A  RG  ++++ +L NG D N+ D++  TPLH+AA+ G   + ++LL+ GA V 
Sbjct: 81  VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 348 TKDRWGNTPLDEGRMCGNKNLIKLLE 373
            +D++G T  D     GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
           ++L  +   AA  G   +++ L+  GAD+N  D  G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
           D++  D FG TPL  A   GH  +  +L+K                              
Sbjct: 72  DVDASDVFGYTPLHLAAYWGHLEIVEVLLK------------------------------ 101
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
            NG D N+ D D  TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 102 -NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 368 LIKLLE 373
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 289
           A   G +D    L+  G D+N  D FG TPL   +  GH  +  +L+K  A +N  D   
Sbjct: 21  AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 290 F--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 347
           +  L +A  RG  ++++ +L  G D N+ DY   TPLH+AA +G   + ++LL+ GA V 
Sbjct: 81  WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 348 TKDRWGNTPLDEGRMCGNKNLIKLLE 373
            +D++G T  D     GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG 288
           A   G +D    L+  G D+N +D +G+TPL  A + GH  +  +L+K GA +N +D +G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 289 SF-LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 347
           S  L +A  RG  ++++ +L  G D N+ D    TPLH+AA  G   + ++LL+ GA V 
Sbjct: 81  STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 348 TKDRWGNTPLDEGRMCGNKNLIKLLE 373
            +D++G T  D     GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
           ++L  +   AA  G   +++ L+  GAD+N  D  G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
           D+N  D  G+TPL  A   GH  +  +L+K                              
Sbjct: 72  DVNAYDTLGSTPLHLAAHFGHLEIVEVLLK------------------------------ 101
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
            NG D N++D +  TPLH+AA+ G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 102 -NGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNED 160
Query: 368 LIKLLE 373
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKF 255
           AA +  L  +K LI+AGA ++  D +G + LHLA  +G+ ++  +L+  G +D+N +D  
Sbjct: 51  AAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110
Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVDP 313
           G TP++ A +  H  +  LL+ +G+ +N+ D    +C+  A   G  D+ + +L+   D 
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 357
           ++ +    +PLH+AA E  Y    L L   + V  K++ G TPL
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 31/183 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
           ++L  +   AA  G   +++ LI  GAD+N  D  G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
           D++  D +G TPL  A   GH  +  +L+K GA                           
Sbjct: 72  DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGA--------------------------- 104
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
               D N+ D    TPLH+AA EG   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 105 ----DVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 368 LIK 370
           L K
Sbjct: 161 LAK 163

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 48/87 (55%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
           D G  L  A   G  D ++ +++NG D N+ D    TPLH+AA  G   + ++LL+ GA 
Sbjct: 13  DLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 346 VFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           V   D +G TPL    M G+  ++++L
Sbjct: 73  VDAADVYGFTPLHLAAMTGHLEIVEVL 99

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
           ++L  +   AA  G   +++ L+  GAD+N TD  G +PLHLA + G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
           D+N  D  G+TPL  A   GH  +  +L+K GA                           
Sbjct: 72  DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGA--------------------------- 104
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
               D N+ D    TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 105 ----DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 368 LIKLLE 373
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 82/178 (46%), Gaps = 34/178 (19%)
Query: 183 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR--SPLHLATSRGYEDITL 240
           +G   +E   +   AA  GD+  +K L    + +N  D +GR  +PLH A       +  
Sbjct: 3   MGSGNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 61
Query: 241 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS 300
           +L+Q G D++ KDK G  PL  A   GH  V  LLVK GA +NV D   F          
Sbjct: 62  YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 111
Query: 301 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 358
                                TPLH AA++G Y + KLLL+ GA    K+R GNTPLD
Sbjct: 112 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 148

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 302 LLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR 361
           +++ +L +G D +++D     PLH A S G Y +A+LL++ GA V   D W  TPL E  
Sbjct: 59  VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 118
Query: 362 MCGNKNLIKLL 372
             G   + KLL
Sbjct: 119 AKGKYEICKLL 129

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 83/178 (46%), Gaps = 36/178 (20%)
Query: 183 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR--SPLHLATSRGYEDITL 240
           +G  EA+  L    AA  GD+  +K L    + +N  D +GR  +PLH A       +  
Sbjct: 3   MGNSEADRQLL--EAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 59
Query: 241 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS 300
           +L+Q G D++ KDK G  PL  A   GH  V  LLVK GA +NV D   F          
Sbjct: 60  YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 109
Query: 301 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 358
                                TPLH AA++G Y + KLLL+ GA    K+R GNTPLD
Sbjct: 110 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 146

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 302 LLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR 361
           +++ +L +G D +++D     PLH A S G Y +A+LL++ GA V   D W  TPL E  
Sbjct: 57  VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116
Query: 362 MCGNKNLIKLL 372
             G   + KLL
Sbjct: 117 AKGKYEICKLL 127

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
           ++L  +   AA  G   +++ L+  GAD+N TD  G +PLHLA + G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
           D+N  D  G+TPL  A   GH  +  +L+K GA                           
Sbjct: 72  DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGA--------------------------- 104
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
               D N+ D    TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 105 ----DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 368 LIKLLE 373
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
           ++L  +   AA  G   +++ L+  GAD+N  D  G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
           D+N  D  G TPL  A   GH  +  +L+K                              
Sbjct: 72  DVNAVDHAGMTPLRLAALFGHLEIVEVLLK------------------------------ 101
Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
            NG D N+ D +  TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 102 -NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED 160
Query: 368 LIKLLE 373
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 83/178 (46%), Gaps = 36/178 (20%)
Query: 183 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR--SPLHLATSRGYEDITL 240
           +G  EA+  L    AA  GD+  +K L    + +N  D +GR  +PLH A       +  
Sbjct: 7   LGNSEADRQLL--EAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 63
Query: 241 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS 300
           +L+Q G D++ KDK G  PL  A   GH  V  LLVK GA +NV D   F          
Sbjct: 64  YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 113
Query: 301 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 358
                                TPLH AA++G Y + KLLL+ GA    K+R GNTPLD
Sbjct: 114 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 150

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 302 LLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR 361
           +++ +L +G D +++D     PLH A S G Y +A+LL++ GA V   D W  TPL E  
Sbjct: 61  VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 120
Query: 362 MCGNKNLIKLL 372
             G   + KLL
Sbjct: 121 AKGKYEICKLL 131

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 31/185 (16%)
Query: 189 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 248
           +L  +   AA  G   +++ L+  GAD N  D+ GR+PLH+A + G+ +I   L++ G D
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS 308
           +N  D  G TPL  A   GH  +  +L+K GA                            
Sbjct: 61  VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGA---------------------------- 92
Query: 309 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 368
              D N++D    TPL++AA  G   + ++LL+ GA V  +D++G T  D     GN++L
Sbjct: 93  ---DVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDL 149
Query: 369 IKLLE 373
            ++L+
Sbjct: 150 AEILQ 154

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 2/146 (1%)
Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 289
           A   G +D    L+  G D+N  D  G+TPL  A   GH  +  +L+K GA +N  D   
Sbjct: 21  AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 290 F--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 347
           +  L +A   G  ++++ +L  G D N++D    TPLH+AA  G   + ++LL+ GA V 
Sbjct: 81  WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 348 TKDRWGNTPLDEGRMCGNKNLIKLLE 373
            +D++G T  D     GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA  G    +K L+   A+ N     G +PLH+A   G+ +  L L++K        K G
Sbjct: 87  AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 314
            TPL  A K G   V  LL++  A  N         L +AV   + D++K +L  G  P+
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 206
Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 374
           S  ++  TPLH+AA +    +A+ LL+ G S   +   G TPL      G+  ++ LL  
Sbjct: 207 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS 266
Query: 375 AKC-------TQLSEFHYCSQ-GMIGIAENLL 398
            +        + L+  H  +Q G + +A+ L+
Sbjct: 267 KQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Query: 258 TPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRVLSNGVDPNS 315
           TPL  A   GH  +   L++ GAS NV +    + L +A   G +++ K +L N    N+
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 316 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 375
           +  D +TPLH AA  G   M KLLLE  A+       G+TPL      G+   +  L + 
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Query: 376 KCTQ-------LSEFHYCSQ-GMIGIAENLL 398
           + +Q        +  H  ++ G + +AE LL
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLL 166

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 31/123 (25%)
Query: 222 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 281
           +GR+PLHLA   G+ ++   L++ G D+N KDK G TPL  A + GH  V  LL++ GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA- 59
Query: 282 LNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 341
                                         D N++D + RTPLH+AA  G   + KLLLE
Sbjct: 60  ------------------------------DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 342 AGA 344
           AGA
Sbjct: 90  AGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 291 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 350
           L +A   G  +++K +L  G D N++D + RTPLH+AA  G   + KLLLEAGA V  KD
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 351 RWGNTPLDEGRMCGNKNLIKLLEDA 375
           + G TPL      G+  ++KLL +A
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEA 90

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 260 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRD 317
           LLEA + G D    +L+  GA +N +DDAG + L +A  RG  ++++ +L +G D N+RD
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
              RTPLH+AA+ G   + ++LLE GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 189 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 248
           +L  +   AA  G   +++ L+  GAD+N TD +G +PLHLA + G  +I   L++ G D
Sbjct: 5   DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRV 306
           +N  D  G TPL  A   GH  +  +L+K GA +N  D   +  L +A   G  ++++ +
Sbjct: 65  VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
Query: 307 LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 339
           L +G D N++D    T   ++ ++G   +A++L
Sbjct: 125 LKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 260 LLEAIKCGHDGVTSLLVKEGASLNV-DDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRD 317
           LLEA   G D    +L+  GA +N  DD G + L +A A G  ++++ +L NG D N+ D
Sbjct: 10  LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
               TPLH+AA +G   + ++LL+ GA V   DR G TPL    + G   ++++L
Sbjct: 70  SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 55/96 (57%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
            ++AA +G   ++K L+  GAD+N    DG +PLHLA   G+ +I   L+ KG D+N + 
Sbjct: 13  LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 254 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 289
           K GNTP   A K GH  +  LL  +GA +N    GS
Sbjct: 73  KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGS 108

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 32/134 (23%)
Query: 222 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 281
           DG +PLH A   G+ +    L+ KG D+N + K GNTPL  A K GH             
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGH------------- 54
Query: 282 LNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 341
                             ++++K +L+ G D N+R  D  TP H+A   G + + KLL  
Sbjct: 55  ------------------AEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Query: 342 AGASVFTKDRWGNT 355
            GA V  +  WG++
Sbjct: 97  KGADVNARS-WGSS 109

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
           D  + L  A   G ++ +K++LS G D N+R  D  TPLH+AA  G   + KLLL  GA 
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 346 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 376
           V  + + GNTP    +  G+  ++KLL DAK
Sbjct: 68  VNARSKDGNTPEHLAKKNGHHEIVKLL-DAK 97

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
Query: 260 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRD 317
           LLEA + G D    +L+  GA +N +DDAG + L +A  RG  ++++ +L +G D N+ D
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
              RTPLH+AA+ G   + ++LLE GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
Query: 260 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRD 317
           LLEA + G D    +L+  GA +N +DDAG + L +A  RG  ++++ +L +G D N+ D
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
              RTPLH+AA+ G   + ++LLE GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 3/181 (1%)
Query: 207 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 265
           K L+ A AD N  D  GR+PLH A S   + +   LI+ +  D++ +   G TPL+ A +
Sbjct: 42  KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 101
Query: 266 CGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 323
              +G+   L+   A +N VDD G S L  A A  + D    +L NG + + ++    TP
Sbjct: 102 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161
Query: 324 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF 383
           L +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL++    +  + 
Sbjct: 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 221
Query: 384 H 384
           H
Sbjct: 222 H 222

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
           ++L  +   AA  G   +++ L+  GAD+N  D DG +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 302
           D+N +D FG TPL  A   GH  +  +L+K GA +N  D    +   I++  G+ DL
Sbjct: 72  DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 260 LLEAIKCGHDGVTSLLVKEGASLNV--DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRD 317
           LLEA + G D    +L+  GA +N   +D  + L +A   G  ++++ +L  G D N+ D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
               TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 3/181 (1%)
Query: 207 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 265
           K L+ A AD N  D  GR+PLH A S   + +   LI+ +  D++ +   G TPL+ A +
Sbjct: 75  KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 134
Query: 266 CGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 323
              +G+   L+   A +N VDD G S L  A A  + D    +L NG + + ++    TP
Sbjct: 135 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 194
Query: 324 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF 383
           L +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL++    +  + 
Sbjct: 195 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 254
Query: 384 H 384
           H
Sbjct: 255 H 255

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/91 (42%), Positives = 50/91 (54%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
           F  A  +GDL ++K  +  G D+N+T   GR PLH A   G  +I  FL+ KG DIN  D
Sbjct: 6   FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 254 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 284
           K   TPLL A+  GH     LL+ +GA   V
Sbjct: 66  KHHITPLLSAVYEGHVSCVKLLLSKGADKTV 96

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 3/170 (1%)
Query: 207 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 265
           K L+ A AD N  D  GR+PLH A S   + +   LI+ +  D++ +   G TPL+ A +
Sbjct: 74  KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133
Query: 266 CGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 323
              +G+   L+   A +N VDD G S L  A A  + D    +L NG + + ++    TP
Sbjct: 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193
Query: 324 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
           L +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL+
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 260 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRD 317
           LLEA + G D    +L+  GA +N  D      L +A A G  ++++ +L NG D N+ D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
               TPLH+AA  G   +A++LL+ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 3/170 (1%)
Query: 207 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 265
           K L+ A AD N  D  GR+PLH A S   + +   LI+ +  D++ +   G TPL+ A +
Sbjct: 74  KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133
Query: 266 CGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 323
              +G+   L+   A +N VDD G S L  A A  + D    +L NG + + ++    TP
Sbjct: 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193
Query: 324 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
           L +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL+
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 50/92 (54%)
Query: 193 RFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 252
            F  A  +GDL ++K  +  G D+N+T   GR PLH A   G  +I  FL+ KG DIN  
Sbjct: 10  EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69
Query: 253 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 284
           DK   TPLL A+  GH     LL+ +GA   V
Sbjct: 70  DKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 95/216 (43%), Gaps = 35/216 (16%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
           F +A   GD  ++  L+  GAD+N  + DG + LH A      D+  FL++ G +IN  D
Sbjct: 44  FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Query: 254 KFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSF---------------------- 290
             G  PL  A  CG+  +   L+ +GA +  V+  G                        
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163
Query: 291 LCIAVARGDSDLL-----KRVLSNGVDPNSRDYDHR----TPLHVAASEGLYLMAKLLLE 341
           + I  AR + + +     ++ L++G   +  D  H     T LHVAA++G   + KLL++
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSG---HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ 220
Query: 342 AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC 377
           A   V  KD  G TPL      G +   ++L +  C
Sbjct: 221 ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
           D G+    A + GD++ + R+L  G D N  + D  T LH A  +    M K L+E GA+
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 346 VFTKDRWGNTPLDEGRMCG 364
           +   D  G  PL     CG
Sbjct: 99  INQPDNEGWIPLHAAASCG 117

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 55/90 (61%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
           D G  L  A   G  D ++ +++NG D N++D D  TPLH+AA EG   + ++LL+AGA 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 346 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 375
           V  +D++G T  D     GN++L ++L+ A
Sbjct: 61  VNAQDKFGKTAFDISIDNGNEDLAEILQKA 90

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 217 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 276
           N  D   R+PL +A   G E+    L++    +  KD  G+T L+ A+K    G+   L+
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 277 KEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYL 334
            +G+++N  D    + L  ++  G S++   +L +G + N R+ +  TPL VA+  G   
Sbjct: 89  SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 335 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 376
           + K LLE GA +  +D  G T     R+ G + +IK+  + +
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 3/171 (1%)
Query: 207 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDI-TLFLIQKGVDINIKDKFGNTPLLEAIK 265
           K L+ A AD    D  GR+PLH A S   + +  + L  +  D++ +   G TPL+ A +
Sbjct: 39  KRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAAR 98
Query: 266 CGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 323
              +G+   L+   A +N VDD G S L  A A  + D    +L NG + + ++    TP
Sbjct: 99  LALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETP 158
Query: 324 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 374
           L +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL++
Sbjct: 159 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 209

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 275 LVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYL 334
           LV  G+ +   D G  L  A   G  D ++ +++NG D  ++D +  TPLH+AA  G   
Sbjct: 13  LVPRGSHMG-SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE 71
Query: 335 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
           + KLLLEAGA V  +D++G T  D     GN++L ++L+
Sbjct: 72  VVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 260 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRD 317
           LLEA + G D    +L+  GA +N +D    + L +A      ++++ +L +G D N+ D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
            D  TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
           ++L  +   AA  G   +++ L   GAD+N  DY G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA 71
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 302
           D+N     G TPL  A    H  +  +L+K GA +N  D    +   I++  G+ DL
Sbjct: 72  DVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 260 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRD 317
           LLEA + G D    +L   GA +N +D    + L +A   G  ++++ +L NG D N+  
Sbjct: 18  LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
              RTPLH+AA      + ++LL+ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 2/182 (1%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
            + AA HG    L+ LI  G  +N    D  SPLH A   G+      L++ G  +N   
Sbjct: 7   MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 66
Query: 254 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCIAVARGDSDLLKRVLSNGVD 312
              +TPL  A   G     +LL++ GAS+  + D  S +  A  RG  + +  +++ G +
Sbjct: 67  ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 126
Query: 313 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
            + +     TPL++A         K LLE+GA V  + +  ++PL       ++ L  LL
Sbjct: 127 IDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVARTASEELACLL 185
Query: 373 ED 374
            D
Sbjct: 186 MD 187

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 3/169 (1%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDI-TLFLIQKGVDINIKDKFGNTPLLEAIKCG 267
           L+ AGAD N  D  GR+PLH A +     +  + L  +  ++N +   G TPL+ A +  
Sbjct: 70  LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 268 HDGVTSLLVKEGASLNV-DDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLH 325
            +G+   L+   A +N  D++G + L  A A  +++ +  +L +  + +++D    TPL 
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 189
Query: 326 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 374
           +AA EG Y  +K LL+  A+    D     P D      + ++++LL++
Sbjct: 190 LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 238

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 52/88 (59%)
Query: 286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
           D G  L  A   G  D ++ +++NG D  ++D +  TPLH+AA  G   + KLLLEAGA 
Sbjct: 5   DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 346 VFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
           V  +D++G T  D     GN++L ++L+
Sbjct: 65  VNAQDKFGKTAFDISIDNGNEDLAEILQ 92

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 16/197 (8%)
Query: 186 HEAELALRFNSAAYHGDLYQLKGLI--RAGADLNKTDYDGRSPLHLATSRGYEDITLFLI 243
           H A +  R +   Y    Y  KG I  + G DLN T      PLH AT +G+  + + L+
Sbjct: 47  HWAAINNRIDLVKY----YISKGAIVDQLGGDLNST------PLHWATRQGHLSMVVQLM 96
Query: 244 QKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDS- 300
           + G D ++ D  G + +  A + GH  + + L+ +G  +++ D      L  A  R  S 
Sbjct: 97  KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV 156
Query: 301 DLLKRVLSNGVDPNSRDYDHR-TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 359
           D  + +L+  V  N  D  H+ T LH A   G   +  LLLEAGA+V  ++  G + LD 
Sbjct: 157 DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL 216
Query: 360 GRMCGNKNLIKLLEDAK 376
            +   N  +I  L++A+
Sbjct: 217 AKQRKNVWMINHLQEAR 233

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 4/164 (2%)
Query: 212 AGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV 271
           +G  +N T  DG SPLH+A   G  D+   L++ G +   ++     PL  A + GH  V
Sbjct: 75  SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQV 134
Query: 272 TSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 329
              L+   A  N  D    + L  A + G  +L+  +L +G   N+ +    T LH A  
Sbjct: 135 VKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVI 194
Query: 330 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
           E    + +LLL  GASV   ++   T +D      N  +++LL+
Sbjct: 195 EKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ--NSKIMELLQ 236

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
Query: 189 ELALRFNSAAYHGDLYQLKGLI-RAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 247
           E AL    A+ H    Q+  L+ R GA++N+ + D  +PLH+A  R + D+   L + G 
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
            +N  D  G T L  A   GH     LL+  G+  ++     F     A+  ++ ++++L
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGF---TAAQMGNEAVQQIL 328
Query: 308 SNGVDPNSRDYDHR 321
           S      + D D+R
Sbjct: 329 SESTPMRTSDVDYR 342

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 254 KFGNTPLLEAIKCGHD-GVTSLLVKEGASLNVDDA--GSFLCIAVARGDSDLLKRVLSNG 310
           ++    LLEA + G++  + +LL     + +  D    + L +A       +++ +L +G
Sbjct: 22  EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG 81
Query: 311 VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 370
            D +++D     PLH A S G Y + +LLL+ GA V   D W  TPL E     +KN ++
Sbjct: 82  ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEA---ASKNRVE 138
Query: 371 L 371
           +
Sbjct: 139 V 139

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 90/181 (49%), Gaps = 11/181 (6%)
Query: 171 RLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLA 230
           ++K++  D T+ + + + E     N A ++ D+   K LI  GAD+N  +    SP   A
Sbjct: 20  KVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA 79
Query: 231 TSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 289
            ++G  +I  ++++    D+N  +++G   L+ A + GH     LL+++G   ++D    
Sbjct: 80  GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE-DIDFQND 138
Query: 290 F------LCIAVARGDS---DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL 340
           F        + +  G+    D++K ++ NG D + +D   RT +  A  +G   ++K+L 
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Query: 341 E 341
           +
Sbjct: 199 Q 199

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 216 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 275
           +++ D +G +PL++A      +I   LI +G DIN+++   ++P L A   G   + + +
Sbjct: 32  VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91
Query: 276 VKEGA-SLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA---- 328
           +K     LN  +   G+ L  A  +G  D +K +L +G      D D +      A    
Sbjct: 92  LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG----REDIDFQNDFGYTALIEA 147
Query: 329 ---SEGLYL---MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
               EG  L   + KLL+E GA    KD  G T +D     G   + K+L
Sbjct: 148 VGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 260 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRD 317
           LLEA + G D    +L+  GA +N +D      L +A      ++++ +L NG D N+ D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
               TPLH+ A  G   + ++LL+ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 80/185 (43%), Gaps = 32/185 (17%)
Query: 189 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 248
           +L  +   AA  G   +++ L+  GA    TD+ G SPLHLA   G+   T  L++ GV 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS 308
            + + K   TPL  A   GH  +  +L+K                               
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLK------------------------------- 88
Query: 309 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 368
           +G D N++D    T LH A       + +LL++ GA V T+ ++  T  D     GN++L
Sbjct: 89  HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL 148
Query: 369 IKLLE 373
            ++L+
Sbjct: 149 AEILQ 153

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 191 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 250
           +L  +  A  G++  L   I     +N TD +G +PL  A + G   +  FL+Q G D  
Sbjct: 20  SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 79
Query: 251 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLS 308
           +  K   + L  A   G+  +  +L+  G  +N  D   G+ L  AV       +K +L 
Sbjct: 80  LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 139
Query: 309 NGVDP 313
           +G DP
Sbjct: 140 SGADP 144

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRV 306
           IN  D+ G TPL+ A   G   V   L++ GA   +   G  S L +A ++G +D++K +
Sbjct: 45  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 307 LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 366
           L  GVD N  D++  TPL  A         K+LLE+GA    +   G   +D     G +
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 164
Query: 367 NLIKLLE 373
           ++ +++E
Sbjct: 165 SVQQVIE 171

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA HG +  ++ L++ GAD         S L LA S+GY DI   L+  GVD+N  D  G
Sbjct: 41  AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 100
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGA--SLNVDDAGSFLCIAVARG 298
            TPLL A+   H     +L++ GA  ++  D   + + +AVA G
Sbjct: 101 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 144

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRV 306
           IN  D+ G TPL+ A   G   V   L++ GA   +   G  S L +A ++G +D++K +
Sbjct: 27  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 307 LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 366
           L  GVD N  D++  TPL  A         K+LLE+GA    +   G   +D     G +
Sbjct: 87  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 146
Query: 367 NLIKLLE 373
           ++ +++E
Sbjct: 147 SVQQVIE 153

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA HG +  ++ L++ GAD         S L LA S+GY DI   L+  GVD+N  D  G
Sbjct: 43  AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 102
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGA--SLNVDDAGSFLCIAVARG 298
            TPLL A+   H     +L++ GA  ++  D   + + +AVA G
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRV 306
           IN  D+ G TPL+ A   G   V   L++ GA   +   G  S L +A ++G +D++K +
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 307 LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 366
           L  GVD N  D++  TPL  A         K+LLE+GA    +   G   +D     G +
Sbjct: 89  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Query: 367 NLIKLLE 373
           ++ +++E
Sbjct: 149 SVQQVIE 155

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
           L++ GA  N  D  G SP+H A   G+ D    L++ G D+N+ D  G  P+  A++ GH
Sbjct: 60  LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
Query: 269 DGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 313
             V S L  E + L+  DA     L +A+ RG  DL+  +  + V P
Sbjct: 120 TAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAP 165

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 230 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD-A 287
           A +RG  +++   L ++ V  +  ++FG T L + +  G   +   L+K+GAS NV D +
Sbjct: 15  AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTS 73
Query: 288 GSFLCIAVAR-GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 346
           G+      AR G  D LK ++ +G D N  D     P+H+A  EG +      L A + +
Sbjct: 74  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG-HTAVVSFLAAESDL 132
Query: 347 FTKDRWGNTPLDEGRMCGNKNLIKLLE 373
             +D  G TPL+     G ++L+ +L+
Sbjct: 133 HRRDARGLTPLELALQRGAQDLVDILQ 159

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 2/182 (1%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
            + AA HG    L+ LI  G  +N    D  SPLH A   G+      L++ G  +N   
Sbjct: 63  MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122
Query: 254 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCIAVARGDSDLLKRVLSNGVD 312
              +TPL  A   G     +LL++ GAS+  + D  S +  A  RG  + +  +++ G +
Sbjct: 123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 182
Query: 313 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
            + +     TPL++A         K LLE+GA V  + +  ++PL       ++ L  LL
Sbjct: 183 IDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVVRTASEELACLL 241
Query: 373 ED 374
            D
Sbjct: 242 MD 243

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 206 LKGLIRAGA----DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPL 260
           L+ L+ + A    DL   +YDG + LH+A +   ++    L+++G DI+  D K G +PL
Sbjct: 95  LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL 154
Query: 261 LEAIKCGHDGVTSLLVKEGASLNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDY 318
           + A++     +  LL++ GA++N       S L  A  RG   L++ ++ +G D + ++ 
Sbjct: 155 IHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC 214
Query: 319 DHRTPLHVAASE 330
            + TPL VA S 
Sbjct: 215 HNDTPLMVARSR 226

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
           L++ GA  N  D  G SP+H A   G+ D    L++ G D+N+ D  G  P+  A++ GH
Sbjct: 54  LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
Query: 269 DGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLL 303
             V S L  E + L+  DA     L +A+ RG  DL+
Sbjct: 114 TAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLV 149

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 230 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD-A 287
           A +RG  +++   L ++ V  +  ++FG T L + +  G   +   L+K+GAS NV D +
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTS 67
Query: 288 GSFLCIAVAR-GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 346
           G+      AR G  D LK ++ +G D N  D     P+H+A  EG +      L A + +
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG-HTAVVSFLAAESDL 126
Query: 347 FTKDRWGNTPLDEGRMCGNKNLIKLLE 373
             +D  G TPL+     G ++L+ +L+
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDILQ 153

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 238 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAV 295
           + L+L     D+N  D  G +PL  A + G   V  +L+  GA +NV + G  + L +A 
Sbjct: 21  VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 80
Query: 296 ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 355
           + G  D+++++L    D N+ +     PLH A   G   +A+ L+  GA V   +++G  
Sbjct: 81  SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEM 140
Query: 356 PLDEGR 361
           P+D+ +
Sbjct: 141 PVDKAK 146

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 238 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAV 295
           + L+L     D+N  D  G +PL  A + G   V  +L+  GA +NV + G  + L +A 
Sbjct: 16  VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 75
Query: 296 ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 355
           + G  D+++++L    D N+ +     PLH A   G   +A+ L+  GA V   +++G  
Sbjct: 76  SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEM 135
Query: 356 PLDEGR 361
           P+D+ +
Sbjct: 136 PVDKAK 141

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           A+  G++  ++ L+  GAD +    +  S L LA++ GY DI   L+++ VDINI D  G
Sbjct: 43  ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAG-SFLCIAVARG 298
            TPLL A++  H      L+  GA L  + D+G + + +AVA G
Sbjct: 103 GTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 32/185 (17%)
Query: 191 ALRFNSAAYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 249
           +L  +  A  G+L QLK  +R G +L NK D  G +PL  A++ G  +   FL++ G D 
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 250 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSN 309
           +I                       L KE  S         L +A   G +D++  +L  
Sbjct: 63  HI-----------------------LAKERESA--------LSLASTGGYTDIVGLLLER 91
Query: 310 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 369
            VD N  D++  TPL  A         + LL  GA + T+   G TP+D     G + + 
Sbjct: 92  DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQ 151
Query: 370 KLLED 374
           +++E+
Sbjct: 152 QVIEN 156

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
           L++ GA  N  D  G SP+H A   G+ D    L++ G D+N  D  G+ P+  AI+ GH
Sbjct: 62  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 269 DGVTSLLVKEGASLNVDDAGSFLCIAVAR 297
             V S L  E + L+  DA     + +AR
Sbjct: 122 SSVVSFLAPE-SDLHHRDASGLTPLELAR 149

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 5/147 (3%)
Query: 230 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 288
           A +RG  +++   L ++ V  +  ++FG T L + +  G   V   L+K+GAS NV DA 
Sbjct: 17  AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDAS 75
Query: 289 SFLCI--AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 346
               +  A   G  D LK ++ +G D N+ D     P+H+A  EG   +   L    + +
Sbjct: 76  GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 134
Query: 347 FTKDRWGNTPLDEGRMCGNKNLIKLLE 373
             +D  G TPL+  R  G +NL+ +L+
Sbjct: 135 HHRDASGLTPLELARQRGAQNLMDILQ 161

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
           L++ GA  N  D  G SP+H A   G+ D    L++ G D+N  D  G+ P+  AI+ GH
Sbjct: 60  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 269 DGVTSLLVKEGASLNVDDAGSFLCIAVAR 297
             V S L  E + L+  DA     + +AR
Sbjct: 120 SSVVSFLAPE-SDLHHRDASGLTPLELAR 147

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 5/147 (3%)
Query: 230 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 288
           A +RG  +++   L ++ V  +  ++FG T L + +  G   V   L+K+GAS NV DA 
Sbjct: 15  AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDAS 73
Query: 289 SFLCI--AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 346
               +  A   G  D LK ++ +G D N+ D     P+H+A  EG   +   L    + +
Sbjct: 74  GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 132
Query: 347 FTKDRWGNTPLDEGRMCGNKNLIKLLE 373
             +D  G TPL+  R  G +NL+ +L+
Sbjct: 133 HHRDASGLTPLELARQRGAQNLMDILQ 159

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 71/163 (43%), Gaps = 31/163 (19%)
Query: 219 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKE 278
           T++ G + LH+A+ +G      +L+Q G D N+KD  G TPL EA   GH  V  LL++ 
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 279 GASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKL 338
            A +                               N+  Y + +PLH AA  G   + KL
Sbjct: 66  KALV-------------------------------NTTGYQNDSPLHDAAKNGHVDIVKL 94
Query: 339 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS 381
           LL  GAS    + +G  P+D       K+L+ L E  + +  S
Sbjct: 95  LLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           A+  G++  ++ L+  GAD +    +  S L LA++ GY DI   L+++ VDINI D  G
Sbjct: 43  ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAG-SFLCIAVARG 298
            TPLL A+   H      L+  GA L  + D+G + + +AVA G
Sbjct: 103 GTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 32/185 (17%)
Query: 191 ALRFNSAAYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 249
           +L  +  A  G+L QLK  +R G +L NK D  G +PL  A++ G  +   FL++ G D 
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 250 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSN 309
           +I                       L KE  S         L +A   G +D++  +L  
Sbjct: 63  HI-----------------------LAKERESA--------LSLASTGGYTDIVGLLLER 91
Query: 310 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 369
            VD N  D++  TPL  A         + LL  GA + T+   G TP+D     G + + 
Sbjct: 92  DVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQ 151
Query: 370 KLLED 374
           +++E+
Sbjct: 152 QVIEN 156

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 33/183 (18%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 252
            + A    + ++++ L+ +   L  + D DGR PLH + S    +IT FL+ K  ++N+ 
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 253 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-SFLCIAVARGDSDLLKRVLSNGV 311
           D                               DD+G +   IA + G+ +++K +    +
Sbjct: 66  DY-----------------------------PDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Query: 312 DPNSRDYDHR--TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 369
            P+     ++  T LH+A  +  + +++ L+E GASV  KD++   PL      G+  LI
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 370 KLL 372
           +LL
Sbjct: 157 ELL 159

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 33/183 (18%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 252
            + A    + ++++ L+ +   L  + D DGR PLH + S    +IT FL+ K  ++N+ 
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 253 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-SFLCIAVARGDSDLLKRVLSNGV 311
           D                               DD+G +   IA + G+ +++K +    +
Sbjct: 66  DY-----------------------------PDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Query: 312 DPNSRDYDHR--TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 369
            P+     ++  T LH+A  +  + +++ L+E GASV  KD++   PL      G+  LI
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 370 KLL 372
           +LL
Sbjct: 157 ELL 159

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 33/183 (18%)
Query: 194 FNSAAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 252
            + A    + ++++ L+ +   L  + D DGR PLH + S    +IT FL+ K  ++N+ 
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 253 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-SFLCIAVARGDSDLLKRVLSNGV 311
           D                               DD+G +   IA + G+ +++K +    +
Sbjct: 66  DY-----------------------------PDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Query: 312 DPNSRDYDHR--TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 369
            P+     ++  T LH+A  +  + +++ L+E GASV  KD++   PL      G+  LI
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 370 KLL 372
           +LL
Sbjct: 157 ELL 159

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 25/205 (12%)
Query: 178 DITFHIGKHEAELALR-------FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLA 230
           DI   + +H A+  LR       F  AA  G +  LK  +  GAD+N+ D+ G +    A
Sbjct: 53  DIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA 112
Query: 231 TSRGYEDITLFLIQKGVDINIKDKF----------GNTPLLEAIKCGHDGVTSLLVKE-G 279
              G      FL ++G ++N++ K           G T L++A + GH  V  +L+ E G
Sbjct: 113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 172
Query: 280 ASLNV-DDAG--SFLCIAVARGDSD---LLKRVLSNGVDPNSRDYDHRTPLHVAASEG-L 332
           A +N  D+ G  + +   ++  DSD   +   +L +G D N R    +TPL +A  +  L
Sbjct: 173 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232
Query: 333 YLMAKLLLEAGASVFTKDRWGNTPL 357
            L+ +LL +    +   D  G T L
Sbjct: 233 GLVQRLLEQEHIEINDTDSDGKTAL 257

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 191 ALRFNSAAYHGDLYQLKGLIRAGADLNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVD 248
           AL F ++ +   L  +   +  GAD+N  +   D  +PL  AT+        FL+Q G +
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLL 303
           +N  D  G  PL  A   GH G+  L +K GA L   D+     L IA+   ++D++
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 191 ALRFNSAAYHGDLYQLKGLIRAGADLNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVD 248
           AL F ++ +   L  +   +  GAD+N  +   D  +PL  AT+        FL+Q G +
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLL 303
           +N  D  G  PL  A   GH G+  L +K GA L   D+     L IA+   ++D++
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 191 ALRFNSAAYHGDLYQLKGLIRAGADLNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVD 248
           AL F ++ +   L  +   +  GAD+N  +   D  +PL  AT+        FL+Q G +
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLL 303
           +N  D  G  PL  A   GH G+  L +K GA L   D+     L IA+   ++D++
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 25/205 (12%)
Query: 178 DITFHIGKHEAELALR-------FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLA 230
           DI   + +H A+  LR       F  AA  G +  LK  +  GAD+N+ D+ G +    A
Sbjct: 73  DIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA 132
Query: 231 TSRGYEDITLFLIQKGVDINIKDKF----------GNTPLLEAIKCGHDGVTSLLVKE-G 279
              G      FL ++G ++N++ K           G T L++A + GH  V  +L+ E G
Sbjct: 133 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 192
Query: 280 ASLNV-DDAG--SFLCIAVARGDSD---LLKRVLSNGVDPNSRDYDHRTPLHVAASEG-L 332
           A +N  D+ G  + +   ++  DSD   +   +L +G D N R    +TPL +A  +  L
Sbjct: 193 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 252
Query: 333 YLMAKLLLEAGASVFTKDRWGNTPL 357
            L+ +LL +    +   D  G T L
Sbjct: 253 GLVQRLLEQEHIEINDTDSDGKTAL 277

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 160 TNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKT 219
            +L  GK +NLR K     I   +      LAL  +S+   G+   ++ +I    D +  
Sbjct: 9   VSLPPGKRTNLR-KTGSERIAHGMRVKFNPLALLLDSS-LEGEFDLVQRIIYEVDDPSLP 66
Query: 220 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG 279
           + +G + LH A   G+ +I  FL+Q GV++N  D  G TPL  A  C +  V   LV+ G
Sbjct: 67  NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 280 ASL 282
           A++
Sbjct: 127 AAV 129

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 17/121 (14%)
Query: 281 SLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL 340
           SL  D+  + L  AV  G ++++K ++  GV+ N+ D D  TPLH AAS     + K L+
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 341 EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE-FHYCSQGMIGIAENLLL 399
           E+GA+VF                   + ++   D KC ++ E +  CSQ + G+ E + +
Sbjct: 124 ESGAAVFAM---------------TYSDMQTAAD-KCEEMEEGYTQCSQFLYGVQEKMGI 167
Query: 400 L 400
           +
Sbjct: 168 M 168

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 160 TNLLEGKESNLRLKQVESDITFH---IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADL 216
            +L  GK +NLR  +  S+   H   +  +   LAL  +S+   G+   ++ +I    D 
Sbjct: 7   VSLPPGKRTNLR--KTGSERIAHGMRVKFNPLPLALLLDSS-LEGEFDLVQRIIYEVDDP 63
Query: 217 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 276
           +  + +G + LH A   G+ +I  FL+Q GV++N  D  G TPL  A  C +  V   LV
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 277 KEGASL 282
           + GA++
Sbjct: 124 ESGAAV 129

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 22/156 (14%)
Query: 251 IKDKFGNTPLLEAIKCGHDGVTSLLVK-----EGASLNVDDAGSFLCIAVARGDSDLLKR 305
           ++ KF   PL   +    +G   L+ +     +  SL  D+  + L  AV  G ++++K 
Sbjct: 29  MRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKF 88
Query: 306 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 365
           ++  GV+ N+ D D  TPLH AAS     + K L+E+GA+VF                  
Sbjct: 89  LVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM---------------T 133
Query: 366 KNLIKLLEDAKCTQLSE-FHYCSQGMIGIAENLLLL 400
            + ++   D KC ++ E +  CSQ + G+ E + ++
Sbjct: 134 YSDMQTAAD-KCEEMEEGYTQCSQFLYGVQEKMGIM 168

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 255 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVD 312
           FG T L + +K G+  +   L+  GA+ ++ D   F  I  A   G  D L+ +L N  D
Sbjct: 37  FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQAD 95
Query: 313 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 371
            N  D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 372 LE 373
           ++
Sbjct: 156 MQ 157

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Query: 242 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGD 299
           L  +  D++ +   G TPL+ A +   +G+   L+   A +N VDD G S L  A A  +
Sbjct: 1   LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 300 SDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 359
            D    +L NG + + ++    TPL +AA EG Y  AK+LL+  A+    D     P D 
Sbjct: 61  VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 120
Query: 360 GRMCGNKNLIKLLED 374
            +   + ++++LL++
Sbjct: 121 AQERMHHDIVRLLDE 135

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 33/179 (18%)
Query: 196 SAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 255
           SAA  GDL QL  L++   ++N  +  GR+ L +    G  +I   L+ +G + ++KD+ 
Sbjct: 11  SAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRT 69
Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 315
           GN  + +A + G                      FL         D L+ +L    D N 
Sbjct: 70  GNAVIHDAARAG----------------------FL---------DTLQTLLEFQADVNI 98
Query: 316 RDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
            D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L++
Sbjct: 99  EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDIT-LFLIQKGVDINIKDKF 255
           A  HG +  +K L+   AD+N  D DG + L  A   G+++I  L L     DI++ D+ 
Sbjct: 190 AVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRD 249
Query: 256 GNTPLLEAIKCGHDGVTSLL 275
           G+T L+ A+  G   + S+L
Sbjct: 250 GSTALMVALDAGQSEIASML 269

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 88/221 (39%), Gaps = 50/221 (22%)
Query: 203 LYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE 262
           +++ K  I AGAD+N  D D  +PL LA       +  +L + G D  I +K   + L +
Sbjct: 146 VHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQ 205
Query: 263 AIKC-------------------------------------GHDGVTS--LLVKEGASLN 283
           A                                        G D V S  LLV++GA ++
Sbjct: 206 AAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVD 265
Query: 284 VDDAG----------SFLCIAVARGDSDLLKRVL-SNGVDPNSRDYDHRTPLHVAASEGL 332
            D A           + L  A    +  ++K ++   G + + +D D +TP+ +AA EG 
Sbjct: 266 YDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGR 325
Query: 333 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
             +   L++ GASV   D   +T     +   + N++ + +
Sbjct: 326 IEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 366

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 255 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVD 312
           FG T L + +K G+  +   L+  GA+ ++ D   F  I  A   G  D L+ +L    D
Sbjct: 37  FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQAD 95
Query: 313 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 371
            N  D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 372 LE 373
           ++
Sbjct: 156 MQ 157

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 255 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVD 312
           FG T L + +K G+  +   L+  GA+ ++ D   F  I  A   G  D L+ +L    D
Sbjct: 37  FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 313 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 371
            N  D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 372 LE 373
           ++
Sbjct: 156 MQ 157

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 255 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVD 312
           FG T L + +K G+  +   L+  GA+ ++ D   F  I  A   G  D L+ +L    D
Sbjct: 37  FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 313 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 371
            N  D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 372 LE 373
           ++
Sbjct: 156 MQ 157

>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFXXXXXXXXXXXXXXX 99
           +  + LF      F+  ++ +L  E F PG+ I+ +G +  ++YF               
Sbjct: 76  VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 135
Query: 100 XXXXXSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIY 151
                 +L   S FGE+S+L    +  +VR    SRL  +   +F  +LE Y
Sbjct: 136 M-----KLSDGSYFGEISLLTRGRRTASVRADTYSRLYSLSVDNFNEVLEEY 182

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 216 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSL 274
           L  T+Y+G + LHLA+  GY  I   L+  G D+N ++   G T L  A+   +  + SL
Sbjct: 107 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 166
Query: 275 LVKEGASLN 283
           L+K GA +N
Sbjct: 167 LLKCGADVN 175

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 12/161 (7%)
Query: 205 QLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 264
           Q+KG +   A LN  +   ++PLHLA      +I   L+  G D  ++D  GNTPL  A 
Sbjct: 27  QVKGDL---AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC 83
Query: 265 KCGHDGVTSLLVKEGAS------LNVDDAGSFLCIAVA--RGDSDLLKRVLSNGVDPNSR 316
           + G      +L +   +      L   +     C+ +A   G   +++ ++S G D N++
Sbjct: 84  EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 143
Query: 317 D-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP 356
           +  + RT LH+A       +  LLL+ GA V      G +P
Sbjct: 144 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 216 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSL 274
           L  T+Y+G + LHLA+  GY  I   L+  G D+N ++   G T L  A+   +  + SL
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169
Query: 275 LVKEGASLN 283
           L+K GA +N
Sbjct: 170 LLKCGADVN 178

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 12/161 (7%)
Query: 205 QLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 264
           Q+KG +   A LN  +   ++PLHLA      +I   L+  G D  ++D  GNTPL  A 
Sbjct: 30  QVKGDL---AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC 86
Query: 265 KCGHDGVTSLLVKEGAS------LNVDDAGSFLCIAVA--RGDSDLLKRVLSNGVDPNSR 316
           + G      +L +   +      L   +     C+ +A   G   +++ ++S G D N++
Sbjct: 87  EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 146
Query: 317 D-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP 356
           +  + RT LH+A       +  LLL+ GA V      G +P
Sbjct: 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187

>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative Modeling And Nmr Data Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 31/149 (20%)
Query: 227 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 286
           L  A +RG  +    L++ G D N  ++FG  P+ + +  G   V  LL+  GA  N  D
Sbjct: 16  LATAAARGQVETVRQLLEAGADPNALNRFGRRPI-QVMMMGSAQVAELLLLHGAEPNCAD 74
Query: 287 AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 346
             +                                 P+H AA EG      +L  AGA +
Sbjct: 75  PATLT------------------------------RPVHDAAREGFLDTLVVLHRAGARL 104
Query: 347 FTKDRWGNTPLDEGRMCGNKNLIKLLEDA 375
              D WG  P+D     G++++ + L  A
Sbjct: 105 DVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major Length = 364

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Query: 223 GRSPLHLATSRG--YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSL---LVK 277
           G++ LH     G  Y +    L+Q G     KDK   TPL  A +  +     L    V 
Sbjct: 138 GQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVP 197
Query: 278 EGASLNVDDAG----SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLY 333
             +SL +D A     S L  A+     D+  R +  G+D N  D +H  PL+++      
Sbjct: 198 SKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAXV 257
Query: 334 LMAKLLLE 341
           L+ K LL+
Sbjct: 258 LLTKELLQ 265

>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structure Of The Cdk6-P16ink4a Tumor Suppressor Complex Length = 156

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 58/158 (36%), Gaps = 31/158 (19%)
Query: 227 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 286
           L  A +RG  +    L++ G + N  + +G  P+ + +  G   V  LL+  GA  N  D
Sbjct: 16  LATAAARGRVEEVRALLEAGANPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCAD 74
Query: 287 AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 346
             +                                 P+H AA EG      +L  AGA +
Sbjct: 75  PATLT------------------------------RPVHDAAREGFLDTLVVLHRAGARL 104
Query: 347 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFH 384
             +D WG  P+D     G++++ + L  A        H
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNH 142

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA  G+L  ++  ++   D ++ + +G + LH A       I  FLI  G ++N  D  G
Sbjct: 28  AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASL 282
            TPL  A  C    +   LV+ GA++
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGAAI 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	403
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-48
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-37
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-37
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-26
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-48
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-47
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-46
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-45
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-43
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-41
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-48
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-44
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-35
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-35
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-46
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-36
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-45
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-43
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-37
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-44
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-40
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-31
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-25
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-44
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-42
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-36
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-35
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-43
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-40
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-29
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-24
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-43
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-39
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-37
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-29
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-42
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-35
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-25
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-42
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-31
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-14
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-42
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-39
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-28
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-42
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-37
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-36
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-33
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-33
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-27
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-41
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-38
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-33
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-27
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-41
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-36
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-27
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-26
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-41
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-38
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-34
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-41
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-32
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-40
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-28
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-40
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-39
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-36
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-33
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-26
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-40
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-32
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-39
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-35
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-26
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-22
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-39
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-39
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-32
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-38
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-35
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-33
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-38
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-35
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-33
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-17
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-38
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-38
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-33
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-37
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-36
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-28
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-21
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-36
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-29
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-21
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-13
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	1e-35
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-35
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-29
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-23
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-20
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-35
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-30
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-30
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-19
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-35
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-32
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-20
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-35
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-24
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-15
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-35
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-29
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-29
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-35
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-33
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-32
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-08
2rfa_A	232	Transient receptor potential cation channel subfa	7e-35
2rfa_A	232	Transient receptor potential cation channel subfa	1e-30
2rfa_A	232	Transient receptor potential cation channel subfa	4e-27
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-32
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-15
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	2e-33
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	2e-32
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-31
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-26
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-31
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-14
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-31
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-30
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	1e-30
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-30
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-27
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-30
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-26
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-13
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	6e-29
2pnn_A	273	Transient receptor potential cation channel subfa	1e-27
2pnn_A	273	Transient receptor potential cation channel subfa	1e-20
2pnn_A	273	Transient receptor potential cation channel subfa	2e-10
2pnn_A	273	Transient receptor potential cation channel subfa	3e-04
2etb_A	256	Transient receptor potential cation channel subfam	2e-26
2etb_A	256	Transient receptor potential cation channel subfam	6e-26
2etb_A	256	Transient receptor potential cation channel subfam	6e-24
2etb_A	256	Transient receptor potential cation channel subfam	3e-15
2etb_A	256	Transient receptor potential cation channel subfam	1e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-25
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-24
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-24
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-23
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-17
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-06
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	1e-23
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-23
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-23
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	5e-20
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	9e-20
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	1e-19
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	5e-16
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	1e-19
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	2e-19
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	3e-19
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	6e-19
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	3e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-08
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	1e-18
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	2e-14
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	1e-18
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	3e-18
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	4e-16
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	7e-18
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	1e-17
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	2e-14
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	4e-17
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-16
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-14
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	9e-16
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	2e-15
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	2e-15
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	6e-13
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	3e-15
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	5e-15
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-15
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-13
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	2e-14
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	3e-14
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	3e-14
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	3e-14
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	6e-14
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	1e-13
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-13
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	9e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-12
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-12
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	3e-12
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	6e-12
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	2e-11
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	6e-11
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	2e-10
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	5e-10
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	9e-10
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	1e-09
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	5e-09
1ft9_A	222	Carbon monoxide oxidation system transcription reg	3e-08
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	4e-08
2zcw_A	202	TTHA1359, transcriptional regulator, FNR/CRP famil	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2byv_E	999	RAP guanine nucleotide exchange factor 4; EPAC2, C	3e-07
3b02_A	195	Transcriptional regulator, CRP family; structural	3e-06
3uo9_A	534	Glutaminase kidney isoform, mitochondrial; hydrola	5e-06
3uo9_A	534	Glutaminase kidney isoform, mitochondrial; hydrola	6e-04

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  164 bits (418), Expect = 4e-48
 Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 2/177 (1%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA HG    L+ LI  G  +N    D  SPLH A   G+      L++ G  +N      
Sbjct: 66  AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 125

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-LCIAVARGDSDLLKRVLSNGVDPNS 315
           +TPL  A   G     +LL++ GAS+  +   +  +  A  RG  + +  +++ G + + 
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDH 185

Query: 316 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           +     TPL++A         K LLE+GA V  + +  ++PL       ++ L  LL
Sbjct: 186 KISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVVRTASEELACLL 241

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  136 bits (346), Expect = 1e-37
 Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 3/151 (1%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           A   G    +  L++ GA +     D  SP+H A  RG+ +    LI  G +I+ K    
Sbjct: 132 ACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHL 190

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNS 315
            TPL  A +         L++ GA +N      S L   V     +L   ++  G D  +
Sbjct: 191 GTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQA 250

Query: 316 RDYDHRTPLHVAASEGLYLMAKLLLEAGASV 346
           ++ + + P+ +   E   L    L   GAS+
Sbjct: 251 KNAEGKRPVELVPPES-PLAQLFLEREGASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  136 bits (345), Expect = 1e-37
 Identities = 47/209 (22%), Positives = 71/209 (33%), Gaps = 34/209 (16%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTD-------------------------------YDGRS 225
            + H   +   GL+  G+ +   D                                   S
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61

Query: 226 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD 285
           P+H A   G++     LI +G  +NI      +PL EA   GH     +L+K GA +N  
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121

Query: 286 DAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG 343
            A     L  A   G  D +  +L +G        D  +P+H AA  G       L+  G
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYG 180

Query: 344 ASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
            ++  K     TPL        +  +K L
Sbjct: 181 GNIDHKISHLGTPLYLACENQQRACVKKL 209

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  104 bits (263), Expect = 6e-26
 Identities = 38/185 (20%), Positives = 66/185 (35%), Gaps = 23/185 (12%)

Query: 229 LATSRGYEDITLFLIQKGVDINIKDKF-----GNTPLLEAIKCGHDGVTSLLVKEGASLN 283
           + +S  +   +  L+ +G  +   D       G+ P       G       L+      +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGD 55

Query: 284 VDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG 343
                S +  A   G    L+ ++S G   N    DH +PLH A   G     K+LL+ G
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 115

Query: 344 ASVFTKDRWGNTPLDEGRMCGNKNLIKLL---------EDAKCTQLSEFHY-CSQGMIGI 393
           A V       +TPL    + G+ + + LL         E    + +   H    +G +  
Sbjct: 116 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPI---HEAARRGHVEC 172

Query: 394 AENLL 398
             +L+
Sbjct: 173 VNSLI 177

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 89.1 bits (222), Expect = 3e-20
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           A  +     +K L+ +GAD+N+      SPLH       E++   L+  G D   K+  G
Sbjct: 197 ACENQQRACVKKLLESGADVNQGK-GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEG 255

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLN 283
             P+              L +EGASL 
Sbjct: 256 KRPVELVPPESPL-AQLFLEREGASLP 281

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  168 bits (428), Expect = 4e-48
 Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 2/179 (1%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA    +   + L++ G   N     G +PLHLA   G+ ++   L+ K  + N+ +K G
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 314
            TPL    + GH  V  +L+K G  ++      +  L +A   G+  L+K +L +  D N
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 338

Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
           ++     +PLH AA +G   +  LLL+ GAS       G TPL   +  G  ++  +L+
Sbjct: 339 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 397

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  166 bits (422), Expect = 3e-47
 Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 2/178 (1%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           A++ G L  +K L++ GA  N ++    +PLH+A   G+ ++  +L+Q    +N K K  
Sbjct: 21  ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 314
            TPL  A + GH  +  LL++  A+ N+        L IA   G  + +  +L       
Sbjct: 81  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 140

Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
                  TPLHVAA  G   +A+LLLE  A      + G TPL       N +++KLL
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  164 bits (418), Expect = 1e-46
 Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 2/178 (1%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA +G +   + L+   A  N    +G +PLH+A      DI   L+ +G   +     G
Sbjct: 153 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 212

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 314
            TPL  A K     V   L++ G S N +       L +A   G ++++  +LS   + N
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN 272

Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
             +    TPLH+ A EG   +A +L++ G  V    R G TPL      GN  L+K L
Sbjct: 273 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  159 bits (406), Expect = 6e-45
 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 2/178 (1%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA  G +  +  L+   A        G +PLH+A   G   +   L+++    N   K G
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 314
            TPL  A+   +  +  LL+  G S +      +  L IA  +   ++ + +L  G   N
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239

Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           +      TPLH+AA EG   M  LLL   A+    ++ G TPL      G+  +  +L
Sbjct: 240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  154 bits (393), Expect = 4e-43
 Identities = 50/162 (30%), Positives = 72/162 (44%), Gaps = 2/162 (1%)

Query: 213 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 272
           G         G +PLH+A+  G+  I   L+Q+G   N+ +    TPL  A + GH  V 
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63

Query: 273 SLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASE 330
             L++  A +N         L  A   G ++++K +L N  +PN       TPLH+AA E
Sbjct: 64  KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123

Query: 331 GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           G       LLE  AS     + G TPL      G   + +LL
Sbjct: 124 GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  150 bits (381), Expect = 2e-41
 Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 5/167 (2%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA  G    +  L+   A+ N  +  G +PLHL    G+  +   LI+ GV ++   + G
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG 311

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSF-LCIAVARGDSDLLKRVLSNGVDPN 314
            TPL  A   G+  +   L++  A +N     G   L  A  +G +D++  +L NG  PN
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371

Query: 315 SRDYDHRTPLHVAASEGLYLMAKLL---LEAGASVFTKDRWGNTPLD 358
               D  TPL +A   G   +  +L    +  + V   D+   +  +
Sbjct: 372 EVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE 418

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  114 bits (288), Expect = 2e-28
 Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 2/130 (1%)

Query: 245 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDL 302
            G+      + G TPL  A   GH  +   L++ GAS NV +      L +A   G +++
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62

Query: 303 LKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRM 362
            K +L N    N++  D +TPLH AA  G   M KLLLE  A+       G+TPL     
Sbjct: 63  AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122

Query: 363 CGNKNLIKLL 372
            G+   +  L
Sbjct: 123 EGHVETVLAL 132

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 68.3 bits (168), Expect = 1e-12
 Identities = 21/65 (32%), Positives = 28/65 (43%)

Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
           S G+          TPLHVA+  G   + K LL+ GAS    +    TPL      G+  
Sbjct: 2   SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61

Query: 368 LIKLL 372
           + K L
Sbjct: 62  VAKYL 66

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  154 bits (392), Expect = 7e-46
 Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 3/163 (1%)

Query: 197 AAYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 255
            A  G+L QLK  +R G +L NK D  G +PL  A++ G  +   FL++ G D +I  K 
Sbjct: 9   LAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE 68

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 313
             + L  A   G+  +  LL++    +N+ D      L  AV       ++ +L+ G D 
Sbjct: 69  RESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128

Query: 314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP 356
            +      TP+ +A + G   + +++      +F  +     P
Sbjct: 129 TTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  129 bits (328), Expect = 2e-36
 Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 3/156 (1%)

Query: 223 GRSPLHLATSRGYEDITLFLIQKGVD-INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 281
               +H   ++G  D     ++KG + +N  D+ G TPL+ A   G       L++ GA 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 282 LNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 339
            ++        L +A   G +D++  +L   VD N  D++  TPL  A         + L
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121

Query: 340 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 375
           L  GA + T+   G TP+D     G + + +++E+ 
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  154 bits (392), Expect = 7e-45
 Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 5/185 (2%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 255
           AA +  +  +K  I  GA +++   D   +PLH AT +G+  + + L++ G D ++ D  
Sbjct: 49  AAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE 108

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDS-DLLKRVLSNGVD 312
           G + +  A + GH  + + L+ +G  +++ D      L  A  R  S D  + +L+  V 
Sbjct: 109 GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS 168

Query: 313 PNSRD-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 371
            N  D Y   T LH A   G   +  LLLEAGA+V  ++  G + LD  +   N  +I  
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINH 228

Query: 372 LEDAK 376
           L++A+
Sbjct: 229 LQEAR 233

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  150 bits (382), Expect = 2e-43
 Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 5/181 (2%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK-F 255
           A  +G   + + L+ AG D+ + D +  + LH A      D+  + I KG  ++      
Sbjct: 16  ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 313
            +TPL  A + GH  +   L+K GA  ++ D      + +A   G + ++  +++ G D 
Sbjct: 76  NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135

Query: 314 NSRDYDHRTPLHVAASEGLYL-MAKLLLEAGASVFTKDRW-GNTPLDEGRMCGNKNLIKL 371
           +  D +  TPL  AA     +   +LLL    SV   D++  NT L    + GN  +I L
Sbjct: 136 DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL 195

Query: 372 L 372
           L
Sbjct: 196 L 196

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  134 bits (341), Expect = 2e-37
 Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 3/145 (2%)

Query: 216 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 275
           +   D      +  AT  G  +    L++ G D+   DK   T L  A       +    
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 276 VKEGASLNV--DDAGSF-LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL 332
           + +GA ++    D  S  L  A  +G   ++ +++  G DP+  D +  + +H+AA  G 
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121

Query: 333 YLMAKLLLEAGASVFTKDRWGNTPL 357
             +   L+  G  V   D+ G TPL
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPL 146

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  153 bits (389), Expect = 1e-44
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 3/179 (1%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKF 255
           AA +      K L+ A AD N  D  GR+PLH A S   + +   LI+    D++ +   
Sbjct: 32  AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 91

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAG-SFLCIAVARGDSDLLKRVLSNGVDP 313
           G TPL+ A +   +G+   L+   A +N  DD G S L  A A  + D    +L NG + 
Sbjct: 92  GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 151

Query: 314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           + ++    TPL +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL
Sbjct: 152 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  142 bits (361), Expect = 1e-40
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 6/169 (3%)

Query: 209 LIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 267
            I  GA L N+TD  G + LHLA      D    L++   D NI+D  G TPL  A+   
Sbjct: 10  FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 69

Query: 268 HDGVTSLLVKEGASLNVDDAGSF----LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 323
             GV  +L++  A+ ++D         L +A       +L+ ++++  D N+ D   ++ 
Sbjct: 70  AQGVFQILIRNRAT-DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 128

Query: 324 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           LH AA+      A +LL+ GA+   ++    TPL      G+    K+L
Sbjct: 129 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  117 bits (295), Expect = 5e-31
 Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 31/154 (20%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA       L+ LI + AD+N  D  G+S LH A +    D  + L++ G + ++++   
Sbjct: 99  AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 158

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 316
            TPL  A + G      +L                               L +  + +  
Sbjct: 159 ETPLFLAAREGSYETAKVL-------------------------------LDHFANRDIT 187

Query: 317 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 350
           D+  R P  +A     + + +LL E       + 
Sbjct: 188 DHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 221

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  100 bits (253), Expect = 4e-25
 Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 4/143 (2%)

Query: 234 GYEDITLFLIQKGVDI-NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-- 290
               +    I +G  + N  D+ G T L  A +         L++  A  N+ D      
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 291 LCIAVARGDSDLLKRVLSNG-VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 349
           L  AV+     + + ++ N   D ++R +D  TPL +AA   +  M + L+ + A V   
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 121

Query: 350 DRWGNTPLDEGRMCGNKNLIKLL 372
           D  G + L       N +   +L
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVL 144

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 89.4 bits (223), Expect = 7e-21
 Identities = 19/92 (20%), Positives = 35/92 (38%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA   ++     L++ GA+ +  +    +PL LA   G  +    L+    + +I D   
Sbjct: 132 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD 191

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 288
             P   A +  H  +  LL +     +    G
Sbjct: 192 RLPRDIAQERMHHDIVRLLDEYNLVRSPQLHG 223

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  152 bits (386), Expect = 4e-44
 Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 7/183 (3%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG----VDINIK 252
           A        ++ L+ AGA     D  G++  HLA           L+       +D+  +
Sbjct: 53  AVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR 112

Query: 253 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF---LCIAVARGDSDLLKRVLSN 309
           +  G T L  A+         LL++ GA ++  D  S    L  AV      +++ +L +
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172

Query: 310 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 369
           G + N++ Y   + LH A+  GL  + + L+ +GA    K+   +TPL   R     +++
Sbjct: 173 GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 232

Query: 370 KLL 372
           +  
Sbjct: 233 RGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  148 bits (376), Expect = 2e-42
 Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 11/187 (5%)

Query: 197 AAYHGDL----YQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 252
           A   G+L      +    + G +L+  +   ++PLHLA       +   L+  G      
Sbjct: 16  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL 75

Query: 253 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSF-----LCIAVARGDSDLLKRV 306
           D+ G T    A +         L+   A   +D +A ++     L +AV     + ++ +
Sbjct: 76  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135

Query: 307 LSNGVDPNSRDYDH-RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 365
           L  G D ++ D    R+PL  A       M +LLL+ GA+V  +   G++ L      G 
Sbjct: 136 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL 195

Query: 366 KNLIKLL 372
             L++ L
Sbjct: 196 LPLVRTL 202

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  132 bits (334), Expect = 2e-36
 Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 7/156 (4%)

Query: 197 AAYHGDLYQLKGLIRAGA----DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 252
           A  H     L+ L+ + A    DL   +YDG + LH+A +   ++    L+++G DI+  
Sbjct: 86  ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV 145

Query: 253 D-KFGNTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAG-SFLCIAVARGDSDLLKRVLSN 309
           D K G +PL+ A++     +  LL++ GA++N    +G S L  A  RG   L++ ++ +
Sbjct: 146 DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS 205

Query: 310 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
           G D + ++  + TPL VA S  +  + +      AS
Sbjct: 206 GADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  130 bits (329), Expect = 1e-35
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 11/168 (6%)

Query: 216 LNKTDYDGRSPLHLATSRGYEDITLFLI----QKGVDINIKDKFGNTPLLEAIKCGHDGV 271
             + D DG +PLH+A  +G       L+    Q G +++I +    TPL  A+      V
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 272 TSLLVKEGASLNV-DDAG-SFLCIAVARGDSDLLKRVLSNG----VDPNSRDYDHRTPLH 325
             LLV  GAS    D  G +   +A        L+ +L +     +D  +R+YD  T LH
Sbjct: 62  VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121

Query: 326 VAASEGLYLMAKLLLEAGASVFTKDR-WGNTPLDEGRMCGNKNLIKLL 372
           VA +       +LLLE GA +   D   G +PL       + ++++LL
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  151 bits (385), Expect = 1e-43
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 3/179 (1%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKF 255
           AA +      K L+ A AD N  D  GR+PLH A S   + +   LI+    D++ +   
Sbjct: 64  AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSF-LCIAVARGDSDLLKRVLSNGVDP 313
           G TPL+ A +   +G+   L+   A +N VDD G   L  A A  + D    +L NG + 
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 183

Query: 314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           + ++    TPL +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL
Sbjct: 184 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  142 bits (362), Expect = 2e-40
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 6/169 (3%)

Query: 209 LIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 267
            I  GA L N+TD  G + LHLA      D    L++   D NI+D  G TPL  A+   
Sbjct: 42  FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 101

Query: 268 HDGVTSLLVKEGASLNVDDAGSF----LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 323
             GV  +L++  A+ ++D         L +A       +L+ ++++  D N+ D   ++ 
Sbjct: 102 AQGVFQILIRNRAT-DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 160

Query: 324 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           LH AA+      A +LL+ GA+   ++    TPL      G+    K+L
Sbjct: 161 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  114 bits (288), Expect = 1e-29
 Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 31/148 (20%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA       L+ LI + AD+N  D  G+S LH A +    D  + L++ G + ++++   
Sbjct: 131 AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 190

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 316
            TPL  A + G      +L                               L +  + +  
Sbjct: 191 ETPLFLAAREGSYETAKVL-------------------------------LDHFANRDIT 219

Query: 317 DYDHRTPLHVAASEGLYLMAKLLLEAGA 344
           D+  R P  +A     + + +LL     
Sbjct: 220 DHMDRLPRDIAQERMHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 99.5 bits (249), Expect = 3e-24
 Identities = 35/173 (20%), Positives = 56/173 (32%), Gaps = 46/173 (26%)

Query: 215 DLNKTDYDGRSPLHLATSRG-------------YEDITLFLIQKGVDI-NIKDKFGNTPL 260
           D+N    DG +PL +A+  G                +    I +G  + N  D+ G T L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 261 LEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDH 320
             A +         L                               L    D N +D   
Sbjct: 62  HLAARYSRSDAAKRL-------------------------------LEASADANIQDNMG 90

Query: 321 RTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           RTPLH A S     + ++L+   A+ +  +   G TPL        + +++ L
Sbjct: 91  RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 143

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 61.7 bits (151), Expect = 5e-11
 Identities = 15/56 (26%), Positives = 23/56 (41%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 252
           AA  G     K L+   A+ + TD+  R P  +A  R + DI   L  +    +  
Sbjct: 197 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  150 bits (382), Expect = 2e-43
 Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 5/180 (2%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA  G +     L++AGA+++    D R+PL  A    + +   +LI+ G  ++ KD  G
Sbjct: 18  AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG 77

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF----LCIAVARGDSDLLKRVLSNGVD 312
           +T L  A K GH  V   L+  G   +V+         +  A      DL+K +LS G D
Sbjct: 78  STCLHLAAKKGHYEVVQYLLSNGQM-DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136

Query: 313 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
            N RD +    LH AA  G   +A++LL A   +   +  G++PL         + + L 
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF 196

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  139 bits (354), Expect = 2e-39
 Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 214 ADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTS 273
            +      + RSPLH A   G+ DI   L+Q G +I+   +   TPL+EA +  H     
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 274 LLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNG-VDPNSRDYDHRTPLHVAASE 330
            L+K GA ++  DA     L +A  +G  ++++ +LSNG +D N +D    TP+  A   
Sbjct: 62  YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121

Query: 331 GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
               + KLLL  G+ +  +D   N  L      G  ++ ++L
Sbjct: 122 KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  132 bits (336), Expect = 8e-37
 Identities = 43/177 (24%), Positives = 66/177 (37%), Gaps = 32/177 (18%)

Query: 197 AAYHGDLYQLKGLIRAGA-DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 255
           AA  G    ++ L+  G  D+N  D  G +P+  AT   + D+   L+ KG DINI+D  
Sbjct: 84  AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE 143

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 315
            N  L  A   G   +  +L                               L+   D ++
Sbjct: 144 ENICLHWAAFSGCVDIAEIL-------------------------------LAAKCDLHA 172

Query: 316 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
            +    +PLH+AA E  Y    L L   + V  K++ G TPL    +         +
Sbjct: 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  113 bits (286), Expect = 2e-29
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 31/148 (20%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           A  +  +  +K L+  G+D+N  D +    LH A   G  DI   L+    D++  +  G
Sbjct: 118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG 177

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 316
           ++PL  A +        L                                LS   D   +
Sbjct: 178 DSPLHIAARENRYDCVVLF-------------------------------LSRDSDVTLK 206

Query: 317 DYDHRTPLHVAASEGLYLMAKLLLEAGA 344
           + +  TPL  A+       A  + +A  
Sbjct: 207 NKEGETPLQCASLNSQVWSALQMSKALQ 234

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  147 bits (374), Expect = 1e-42
 Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 11/186 (5%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           A         + L      +++ D +G +PL++A      +I   LI +G DIN+++   
Sbjct: 13  ANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSIS 72

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF----LCIAVARGDSDLLKRVLSNG-V 311
           ++P L A   G   + + ++K     +++    +    L  A  +G  D +K +L +G  
Sbjct: 73  DSPYLYAGAQGRTEILAYMLKHATP-DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE 131

Query: 312 DPNSRDYDHRTPLHVAASEGLYL-----MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 366
           D + ++    T L  A            + KLL+E GA    KD  G T +D     G  
Sbjct: 132 DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT 191

Query: 367 NLIKLL 372
            + K+L
Sbjct: 192 EISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  126 bits (320), Expect = 6e-35
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 4/142 (2%)

Query: 220 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG 279
            Y+  + L  A  R  + +   L      ++  D  GNTPL  A+      +   L+  G
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 280 ASLNVDDAGSF--LCIAVARGDSDLLKRVLSNG-VDPNSRDYDHRTPLHVAASEGLYLMA 336
           A +N+ ++ S      A A+G +++L  +L +   D N  +      L  AA +G     
Sbjct: 63  ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNV 122

Query: 337 KLLLEAG-ASVFTKDRWGNTPL 357
           KLLLE G   +  ++ +G T L
Sbjct: 123 KLLLEDGREDIDFQNDFGYTAL 144

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  100 bits (253), Expect = 3e-25
 Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 38/152 (25%)

Query: 197 AAYHGDLYQLKGLIRAGA-DLNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDK 254
           A   G    L  +++    DLNK +  G + L  A  +G+ D    L++ G  DI+ ++ 
Sbjct: 79  AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND 138

Query: 255 FGNTPLLEAIKC-----GHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSN 309
           FG T L+EA+        +  +  LL                               + N
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLL-------------------------------MEN 167

Query: 310 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 341
           G D + +D   RT +  A  +G   ++K+L +
Sbjct: 168 GADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 89.4 bits (223), Expect = 5e-21
 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 3/125 (2%)

Query: 251 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLS 308
           +K       L  A +     V  +L      ++  D      L IAV   D ++ K ++ 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 309 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKN 367
            G D N ++    +P   A ++G   +   +L+     +   +R+G   L      G+ +
Sbjct: 61  RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120

Query: 368 LIKLL 372
            +KLL
Sbjct: 121 NVKLL 125

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  148 bits (376), Expect = 1e-42
 Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 11/192 (5%)

Query: 190 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 249
           LA+     A   ++ +   +    A LN  +   ++PLHLA      +I   L+  G D 
Sbjct: 14  LAIIHEEKALTMEVIRQ--VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 71

Query: 250 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGA------SLNVDDAGSF--LCIAVARGDSD 301
            ++D  GNTPL  A + G      +L +          L   +      L +A   G   
Sbjct: 72  ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG 131

Query: 302 LLKRVLSNGVDPNSRD-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG 360
           +++ ++S G D N+++  + RT LH+A       +  LLL+ GA V      G +P    
Sbjct: 132 IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 191

Query: 361 RMCGNKNLIKLL 372
               +  + + L
Sbjct: 192 WGRPSTRIQQQL 203

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  117 bits (295), Expect = 6e-31
 Identities = 33/169 (19%), Positives = 52/169 (30%), Gaps = 38/169 (22%)

Query: 197 AAYHGDLYQLKGLIRAGAD------LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 250
           A   G L  +  L ++         L  T+Y+G + LHLA+  GY  I   L+  G D+N
Sbjct: 85  ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144

Query: 251 IKDKF-GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSN 309
            ++   G T L  A+   +  + SLL                               L  
Sbjct: 145 AQEPCNGRTALHLAVDLQNPDLVSLL-------------------------------LKC 173

Query: 310 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 358
           G D N   Y   +P  +        + + L +                 
Sbjct: 174 GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 222

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 85.3 bits (212), Expect = 3e-19
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 12/133 (9%)

Query: 252 KDKFGNTPLLEAIKCGHDGVTS----LLVKEGASLNV-DDAGSF-LCIAVARGDSDLLKR 305
             + G++ L  AI      +T      +  + A LN  ++     L +AV     ++ + 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 306 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT------KDRWGNTPLDE 359
           +L  G DP  RD+   TPLH+A  +G      +L ++  +          +  G+T L  
Sbjct: 64  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123

Query: 360 GRMCGNKNLIKLL 372
             + G   +++LL
Sbjct: 124 ASIHGYLGIVELL 136

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.0 bits (175), Expect = 3e-14
 Identities = 16/76 (21%), Positives = 25/76 (32%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           A    +   +  L++ GAD+N+  Y G SP  L   R    I   L Q  ++        
Sbjct: 158 AVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 217

Query: 257 NTPLLEAIKCGHDGVT 272
                   +      T
Sbjct: 218 EDEESYDTESEFTEFT 233

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  145 bits (369), Expect = 2e-42
 Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 2/157 (1%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
            A  G++  L   I     +N TD +G +PL  A + G   +  FL+Q G D  +  K  
Sbjct: 10  LAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR 69

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 314
            + L  A   G+  +  +L+  G  +N  D      L  AV       +K +L +G DP 
Sbjct: 70  ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 129

Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR 351
                    + +A + G   + +++      +    +
Sbjct: 130 IETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  137 bits (347), Expect = 3e-39
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 2/156 (1%)

Query: 222 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 281
                +H   ++G        I++   IN  D+ G TPL+ A   G   V   L++ GA 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 282 LNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 339
             +   G    L +A ++G +D++K +L  GVD N  D++  TPL  A         K+L
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121

Query: 340 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 375
           LE+GA    +   G   +D     G +++ +++E  
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  109 bits (274), Expect = 1e-28
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 2/125 (1%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA HG +  ++ L++ GAD         S L LA S+GY DI   L+  GVD+N  D  G
Sbjct: 43  AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 102

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 314
            TPLL A+   H     +L++ GA   ++    +  + +AVA G   + + + S+ +   
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162

Query: 315 SRDYD 319
               +
Sbjct: 163 QNIKE 167

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  148 bits (376), Expect = 6e-42
 Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 4/176 (2%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           A    ++  +K L+  GA++N+ D +G  PLH A S GY DI  +LI +G  +   +  G
Sbjct: 80  ACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 316
           +TPL  A +   + +    V     ++++ A             D  + + S  ++    
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQG-VDIEAA---RKEEERIMLRDARQWLNSGHINDVRH 195

Query: 317 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
                T LHVAA++G   + KLL++A   V  KD  G TPL      G +   ++L
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  135 bits (342), Expect = 6e-37
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 8/178 (4%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           A   GD  ++  L+  GAD+N  + DG + LH A      D+  FL++ G +IN  D  G
Sbjct: 47  ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 314
             PL  A  CG+  +   L+ +GA +   ++     L IA      +LL+  ++      
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ---- 162

Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
               D            L    + L     +     + G T L      G   ++KLL
Sbjct: 163 --GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  131 bits (333), Expect = 9e-36
 Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 10/181 (5%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKF 255
           AA  G L   + LI  GA +   + +G +PL +A     E++    + ++GVDI    K 
Sbjct: 113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKE 172

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 313
                              L     +           L +A A+G +++LK ++    D 
Sbjct: 173 EERI-------MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV 225

Query: 314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
           N +DYD  TPLH AA  G     ++L+E    +   ++ G T  D         L +L +
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQK 285

Query: 374 D 374
            
Sbjct: 286 K 286

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  126 bits (319), Expect = 1e-33
 Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 3/159 (1%)

Query: 216 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 275
           +   D   +    L    G E      + K     +K   G    L A   G       L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59

Query: 276 VKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLY 333
           ++ GA +N  +      L  A    + D++K ++ NG + N  D +   PLH AAS G  
Sbjct: 60  LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL 119

Query: 334 LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
            +A+ L+  GA V   +  G+TPLD       + L++  
Sbjct: 120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  126 bits (318), Expect = 2e-33
 Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 9/178 (5%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
             + G    L+  +           DG      A S G  +  L L+++G DIN  +  G
Sbjct: 15  KRWIGSETDLEPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLERGADINYANVDG 73

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 314
            T L +A    +  +   LV+ GA++N  D   +  L  A + G  D+ + ++S G    
Sbjct: 74  LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133

Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           + + +  TPL +A  E +  + +  +         D        E      ++  + L
Sbjct: 134 AVNSEGDTPLDIAEEEAMEELLQNEVNRQG----VD--IEAARKEEERIMLRDARQWL 185

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  115 bits (290), Expect = 1e-29
 Identities = 33/174 (18%), Positives = 58/174 (33%), Gaps = 35/174 (20%)

Query: 179 ITFHIGKHEAEL--ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYE 236
           +   + +   ++  A +        D  Q   L     +  +    G + LH+A ++GY 
Sbjct: 155 LQNEVNRQGVDIEAARKEEERIMLRDARQW--LNSGHINDVRHAKSGGTALHVAAAKGYT 212

Query: 237 DITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVA 296
           ++   LIQ   D+NIKD  G TPL  A   G +    +L                     
Sbjct: 213 EVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL--------------------- 251

Query: 297 RGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 350
                     + N  D  + +   +T   VA  + L  + +L  +       K 
Sbjct: 252 ----------VENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  109 bits (276), Expect = 1e-27
 Identities = 37/162 (22%), Positives = 59/162 (36%), Gaps = 15/162 (9%)

Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSFLCIAVARGDSDLLKRVL 307
           + + D             G +      V +     V  D G+    A + GD++ + R+L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60

Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
             G D N  + D  T LH A  +    M K L+E GA++   D  G  PL     CG  +
Sbjct: 61  ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLD 120

Query: 368 LIKLL------EDAK----CTQLSEFHYCSQ-GMIGIAENLL 398
           + + L        A      T L       +  M  + +N +
Sbjct: 121 IAEYLISQGAHVGAVNSEGDTPL---DIAEEEAMEELLQNEV 159

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  146 bits (372), Expect = 2e-41
 Identities = 51/193 (26%), Positives = 76/193 (39%), Gaps = 17/193 (8%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           A        ++ L+R GAD      +G +P  LA   G   +    + KG D+N  D +G
Sbjct: 46  AVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG 105

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF------------LCIAVARGDSDLLK 304
            T  +EA   G       L K GA++N+                  L  A  +G  ++LK
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165

Query: 305 RVLSN-GVDPNSRDYDHRTPLHVAASEG----LYLMAKLLLEAGASVFTKDRWGNTPLDE 359
            +L   G D N+ D   R  L  A        +  +  LLL+ GA V  +   G TPL  
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225

Query: 360 GRMCGNKNLIKLL 372
                +  L++ L
Sbjct: 226 AVEKKHLGLVQRL 238

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  139 bits (352), Expect = 1e-38
 Identities = 54/197 (27%), Positives = 79/197 (40%), Gaps = 18/197 (9%)

Query: 194 FNSAAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 252
              A  + D+  ++ L+  GA++N + +  G +PLH A     EDI   L++ G D  ++
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68

Query: 253 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNG 310
            K G TP L A   G   +  L + +GA +N  D   F     A   G    LK +   G
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128

Query: 311 VDPNSRDYDH----------RTPLHVAASEGLYLMAKLLL-EAGASVFTKDRWGNTPL-- 357
            + N R               T L  AA +G   + K+LL E GA V   D  G   L  
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188

Query: 358 --DEGRMCGNKNLIKLL 372
                     + +  LL
Sbjct: 189 ALLSSDDSDVEAITHLL 205

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  124 bits (314), Expect = 4e-33
 Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 13/166 (7%)

Query: 220 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK-FGNTPLLEAIKCGHDGVTSLLVKE 278
             +    L  A      D+   L++ G ++N +++  G TPL  A++   + +  LL++ 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 279 GASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMA 336
           GA   +          +A   G   LLK  LS G D N  D+   T    AA  G     
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 337 KLLLEAGASVFTKD----------RWGNTPLDEGRMCGNKNLIKLL 372
           K L + GA+V  +           + G T L +    G+  ++K+L
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  109 bits (276), Expect = 1e-27
 Identities = 44/159 (27%), Positives = 65/159 (40%), Gaps = 35/159 (22%)

Query: 197 AAYHGDLYQLKGLI-RAGADLNKTDYDGRSPLHLATSRG----YEDITLFLIQKGVDINI 251
           AA  G +  LK L+   GAD+N  D  GR+ L  A         E IT  L+  G D+N+
Sbjct: 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 214

Query: 252 KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGV 311
           + + G TPL+ A++  H G+   L+                                  +
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLL------------------------------EQEHI 244

Query: 312 DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 350
           + N  D D +T L +A    L  +A+LL + GAS    D
Sbjct: 245 EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  146 bits (371), Expect = 2e-41
 Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 20/196 (10%)

Query: 197 AAYHGDLYQLKGLIRAGAD---LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
           A  H     L  L+   A    L+  +  G++ LHLA   G       L   G  + + +
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75

Query: 254 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF----------------LCIAVAR 297
           + G+T L  A +        +L++   S   D + ++                   +   
Sbjct: 76  RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN 135

Query: 298 GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR-WGNTP 356
            +++   R     +   + +YD  TPLHVA       M +LL +AGA +   +   G TP
Sbjct: 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195

Query: 357 LDEGRMCGNKNLIKLL 372
           L         ++++LL
Sbjct: 196 LHLAVEAQAASVLELL 211

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  132 bits (335), Expect = 4e-36
 Identities = 35/179 (19%), Positives = 58/179 (32%), Gaps = 17/179 (9%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSP--------------LHLATSRGYEDITLFL 242
           A           L++      +   D                     +      +     
Sbjct: 85  ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144

Query: 243 IQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF---LCIAVARGD 299
               + +  ++  G+TPL  A+      +  LL   GA LN  +       L +AV    
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA 204

Query: 300 SDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 358
           + +L+ +L  G DP +R Y  RTPL  A      ++A+LL   GA          +P  
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCS 263

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  108 bits (272), Expect = 4e-27
 Identities = 33/146 (22%), Positives = 49/146 (33%), Gaps = 32/146 (21%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 255
           A  H D   ++ L  AGADLNK +   GR+PLHLA       +   L++ G D   +   
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 315
           G TPL  A+   +  +  LL                                ++G     
Sbjct: 225 GRTPLGSALLRPNPILARLL-------------------------------RAHGAPEPE 253

Query: 316 RDYDHRTPLHVAASEGLYLMAKLLLE 341
              D  +P   + S+          E
Sbjct: 254 DGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  106 bits (266), Expect = 2e-26
 Identities = 24/164 (14%), Positives = 42/164 (25%), Gaps = 34/164 (20%)

Query: 216 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD---INIKDKFGNTPLLEAIKCGHDGVT 272
                 DG + LHLA    +E    FL+        +++++  G T L  A   G     
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 273 SLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL 332
             L                                + G      +    T LH+A     
Sbjct: 62  EKL-------------------------------YAAGAGVLVAERGGHTALHLACRVRA 90

Query: 333 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 376
           +  A +LL+   S             +       +    ++   
Sbjct: 91  HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP 134

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  147 bits (374), Expect = 4e-41
 Identities = 43/194 (22%), Positives = 70/194 (36%), Gaps = 7/194 (3%)

Query: 209 LIRAGADLNKTDYDGRSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 267
           L    A    T    +  L  A   G  E +   L    V+ +  D   +TPL  A    
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN 69

Query: 268 HDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLH 325
              +  LL++ GA ++  D G    L  A + G  ++ + +L +G   N+ D    TPLH
Sbjct: 70  RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLH 129

Query: 326 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHY 385
            AAS+    +  LLL  GA     +  G + +D       +  +           S    
Sbjct: 130 EAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH----SLLQA 185

Query: 386 CSQGMIGIAENLLL 399
             +  +   +  L 
Sbjct: 186 AREADLAKVKKTLA 199

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  140 bits (356), Expect = 1e-38
 Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 29/204 (14%)

Query: 197 AAYHGDLYQL-KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 255
           AA  G+  +L   L     + + +D    +PLHLA       I   L+Q G D++ KDK 
Sbjct: 31  AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG 90

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 313
           G  PL  A   GH  VT LL+K GA +N  D   F  L  A ++   ++   +LS+G DP
Sbjct: 91  GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150

Query: 314 NSRDYDHRTPLHVAASEGL-----YL----------------MAKLLLEAGASVFTKDRW 352
              +   ++ + +A +  L     Y                   K  L      F + + 
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS 210

Query: 353 GNTPL----DEGRMCGNKNLIKLL 372
             T L            K + +LL
Sbjct: 211 HETALHCAVASLH-PKRKQVAELL 233

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  127 bits (323), Expect = 8e-34
 Identities = 40/180 (22%), Positives = 64/180 (35%), Gaps = 38/180 (21%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYE---DITLFLIQKGVDINIKD 253
           AA   DL ++K  +       K      + LH A +  +     +   L++KG ++N K+
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN 244

Query: 254 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDP 313
           K   TPL  A +  H+ V  +L                                 +G   
Sbjct: 245 KDFMTPLHVAAERAHNDVMEVL-------------------------------HKHGAKM 273

Query: 314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
           N+ D   +T LH AA  G     +LLL  G+        G T        GN+ + ++L 
Sbjct: 274 NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAA----QMGNEAVQQILS 329

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  120 bits (304), Expect = 4e-31
 Identities = 37/172 (21%), Positives = 57/172 (33%), Gaps = 41/172 (23%)

Query: 197 AAYHGDLYQL---KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
           A       +    + L+R GA++N+ + D  +PLH+A  R + D+   L + G  +N  D
Sbjct: 218 AVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD 277

Query: 254 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDP 313
             G T L  A   GH     LL                               LS G DP
Sbjct: 278 SLGQTALHRAALAGHLQTCRLL-------------------------------LSYGSDP 306

Query: 314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 365
           +       T   +          + +L     + T D   +  L E    G+
Sbjct: 307 SIISLQGFTAAQMGN-----EAVQQILSESTPMRTSD--VDYRLLEASKAGD 351

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  113 bits (286), Expect = 1e-28
 Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 16/154 (10%)

Query: 222 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH-DGVTSLLVKEGA 280
            G+S L L                     +  ++    LLEA + G+ + + +LL     
Sbjct: 3   FGKSALDL-------------ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNV 49

Query: 281 SLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKL 338
           + +  D      L +A       +++ +L +G D +++D     PLH A S G Y + +L
Sbjct: 50  NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTEL 109

Query: 339 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           LL+ GA V   D W  TPL E        +  LL
Sbjct: 110 LLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  143 bits (363), Expect = 6e-41
 Identities = 60/211 (28%), Positives = 98/211 (46%), Gaps = 9/211 (4%)

Query: 197 AAYHGDLYQL-KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 255
            AY G L +L + ++   +   +TD D R+ LH A S G+ +I  FL+Q GV +N KD  
Sbjct: 13  LAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 313
           G +PL  A   G D +   L+ +GA +N  +      L  A ++   ++   +L  G +P
Sbjct: 73  GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132

Query: 314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL- 372
           +++D+   T +H AA++G   M  +LL   AS   +D  GNTPL            K L 
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192

Query: 373 -----EDAKCTQLSEFHYCSQGMIGIAENLL 398
                   +  +       ++G +G+    L
Sbjct: 193 TQGASIYIENKEEKTPLQVAKGGLGLILKRL 223

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  119 bits (301), Expect = 6e-32
 Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 2/153 (1%)

Query: 222 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 281
                 +LA S   +++   ++         D+   T L  A   GH  +   L++ G  
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 282 LNV-DDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 339
           +N  DDAG S L IA + G  +++K +L  G   N+ + +  TPLH AAS+  + +A +L
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

Query: 340 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           LE GA+   KD +  T +      GN  ++ +L
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  110 bits (277), Expect = 2e-28
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 4/152 (2%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA  G    +K L+  GA +N  + +G +PLH A S+   +I + L++ G + + KD + 
Sbjct: 80  AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 314
            T +  A   G+  +  +L+   AS N+ D      L +A      +  K +++ G    
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY 199

Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 346
             + + +TPL VA   G   +    L  G   
Sbjct: 200 IENKEEKTPLQVAK--GGLGLILKRLAEGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 88.4 bits (219), Expect = 2e-20
 Identities = 30/121 (24%), Positives = 54/121 (44%)

Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
            + AA          L+  GA+ +  D+   + +H A ++G   +   L+      NI+D
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169

Query: 254 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDP 313
             GNTPL  A           LV +GAS+ +++      + VA+G   L+ + L+ G + 
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA 229

Query: 314 N 314
           +
Sbjct: 230 S 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 70.7 bits (173), Expect = 3e-14
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
            + AA  G+L  +  L+   A  N  D +G +PLHLA      +   FL+ +G  I I++
Sbjct: 143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202

Query: 254 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 284
           K   TPL  A   G  G+    + EG   ++
Sbjct: 203 KEEKTPLQVA--KGGLGLILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 52.2 bits (125), Expect = 5e-08
 Identities = 17/112 (15%), Positives = 44/112 (39%), Gaps = 16/112 (14%)

Query: 140 DKQSFTSILEIYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAY 199
           D    T+ +      G   + ++L   +++  ++  E +   H+             A  
Sbjct: 136 DHYDATA-MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL-------------ACD 181

Query: 200 HGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI 251
              + + K L+  GA +   + + ++PL +A   G   + L  + +G + ++
Sbjct: 182 EERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  140 bits (355), Expect = 5e-40
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 4/174 (2%)

Query: 207 KGLIRAGADL--NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 264
           +  I    D   N  D   R+PL +A   G E+    L++    +  KD  G+T L+ A+
Sbjct: 17  EKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAV 76

Query: 265 KCGHDGVTSLLVKEGASLNV-DDAGSF-LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRT 322
           K    G+   L+ +G+++N  D +G   L  ++  G S++   +L +G + N R+ +  T
Sbjct: 77  KNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGET 136

Query: 323 PLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 376
           PL VA+  G   + K LLE GA +  +D  G T     R+ G + +IK+  + +
Sbjct: 137 PLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  109 bits (276), Expect = 1e-28
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 11/162 (6%)

Query: 213 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 272
           G+ ++K   +G     +   +       FL       N +D +  TPL+ A   G +   
Sbjct: 1   GSHMDK---NGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAI 51

Query: 273 SLLVKEGASLNV-DDAGSF-LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASE 330
             LV+    L   D  GS  L  AV      + +++LS G + N++D+  +TPL  +   
Sbjct: 52  DKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIF 111

Query: 331 GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           G   M+  LLE GA+V  ++  G TPL      G   ++K L
Sbjct: 112 GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  142 bits (361), Expect = 7e-40
 Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 10/179 (5%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA   D   +K L+ +G D ++ D  G + L+ A   G        ++K   +    K G
Sbjct: 69  AATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG 128

Query: 257 -NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-LCIAVARGDSDLLKRVLSNGVDPN 314
             T    A+      + S  + E  S          + I +  G  D++  +L      N
Sbjct: 129 WKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTN 188

Query: 315 SRDYDHRTP-LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           + +     P + +A       M + L +   ++        +   E  +  +  + K++
Sbjct: 189 TNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI-------YSANLENVLLDDAEIAKMI 240

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  140 bits (356), Expect = 3e-39
 Identities = 41/180 (22%), Positives = 65/180 (36%), Gaps = 7/180 (3%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           A    ++  +  L+ AGA  N    +   PLH A +     I   L+  G+D +  D  G
Sbjct: 38  AIADNNVRLVCTLLNAGALKNL--LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG 95

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSF--LCIAVARGDSDLLKRVLSNGVDP 313
           NT L  A+  G+     L VK+   L      G       AV   D  ++   LS     
Sbjct: 96  NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS- 154

Query: 314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP-LDEGRMCGNKNLIKLL 372
                   + +H+    G   M  LLL+   S  T +     P +       +  +++ L
Sbjct: 155 TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQAL 214

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  133 bits (338), Expect = 1e-36
 Identities = 31/180 (17%), Positives = 55/180 (30%), Gaps = 7/180 (3%)

Query: 196 SAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 255
           S        QLK  +    D  K D  G S  + A +     +   L+  G   N+ +  
Sbjct: 5   SRINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE-- 61

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 313
              PL +A       +  +L+  G   +  D      L  AV  G+   +K  +      
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 121

Query: 314 NSRD-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
                   +T  + A       +    L    S         + +      G+ +++ LL
Sbjct: 122 MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-FDLAILLSCIHITIKNGHVDMMILL 180

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  125 bits (316), Expect = 2e-33
 Identities = 22/165 (13%), Positives = 57/165 (34%), Gaps = 12/165 (7%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDG-RSPLHLATSRGYEDITLFLIQKGVDINIKDKF 255
           A   G++  +K  ++    L      G ++  + A       I  + + +          
Sbjct: 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI-PSTFDLAI 160

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF---LCIAVARGDSDLLKRVLSNGVD 312
             + +   IK GH  +  LL+    S N +++  F   + +A+   D ++L+ +    ++
Sbjct: 161 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN 220

Query: 313 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 357
                    +            +AK+++E      +     +  +
Sbjct: 221 IY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  106 bits (267), Expect = 2e-26
 Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 7/133 (5%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           A    D+  +   +              S +H+    G+ D+ + L+      N  +   
Sbjct: 136 AVMLNDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLL 194

Query: 257 NTPLL-EAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 315
             P +  AI      +   L K     N+  A       V   D+++ K ++   V+  S
Sbjct: 195 FIPDIKLAIDNKDIEMLQALFKYDI--NIYSA---NLENVLLDDAEIAKMIIEKHVEYKS 249

Query: 316 RDYDHRTPLHVAA 328
             Y     +    
Sbjct: 250 DSYTKDLDIVKNN 262

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 76.8 bits (190), Expect = 5e-16
 Identities = 17/125 (13%), Positives = 39/125 (31%), Gaps = 14/125 (11%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSP-LHLATSRGYEDITLFLIQKGVDINIKDKF 255
              +G +  +  L+      N  +     P + LA      ++   L +  ++I      
Sbjct: 168 TIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY----- 222

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARG------DSDLLKRVLSN 309
             +  LE +      +  +++++      D     L I            +  L+ +  N
Sbjct: 223 --SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVN 280

Query: 310 GVDPN 314
            V  N
Sbjct: 281 CVKKN 285

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  139 bits (352), Expect = 8e-40
 Identities = 41/177 (23%), Positives = 66/177 (37%), Gaps = 32/177 (18%)

Query: 197 AAYHGDLYQLKGLIRAGA-DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 255
               G+   ++  +     DLN+ D  G SPLH A   G   +   LI +G  IN+ ++ 
Sbjct: 12  QCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG 71

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 315
            +TPL  A   GH  +   L                               L    D N+
Sbjct: 72  DDTPLHLAASHGHRDIVQKL-------------------------------LQYKADINA 100

Query: 316 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
            +     PLH A   G   +A+ L+  GA V   +++G  P+D+ +    + L +  
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  120 bits (303), Expect = 1e-32
 Identities = 36/150 (24%), Positives = 56/150 (37%), Gaps = 31/150 (20%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           A   G    ++ LI  GA +N  +    +PLHLA S G+ DI   L+Q   DIN  ++ G
Sbjct: 46  ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG 105

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 316
           N PL  A   G D V   L                               ++NG   +  
Sbjct: 106 NVPLHYACFWGQDQVAEDL-------------------------------VANGALVSIC 134

Query: 317 DYDHRTPLHVAASEGLYLMAKLLLEAGASV 346
           +     P+  A +    L+ +   + G ++
Sbjct: 135 NKYGEMPVDKAKAPLRELLRERAEKMGQNL 164

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  143 bits (364), Expect = 2e-39
 Identities = 44/193 (22%), Positives = 81/193 (41%), Gaps = 17/193 (8%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQK---GVDINIKD 253
           A        +  L++AGAD    +   RS LH A +     + ++++       DI   D
Sbjct: 173 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD 232

Query: 254 KFGNTPLLEAIKCGHDGVTS---LLVKEGASLNVDDAGSF----------LCIAVARGDS 300
           + G T L+           +   LLV++GA ++ D A             L  A    + 
Sbjct: 233 RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNM 292

Query: 301 DLLKRVLS-NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 359
            ++K ++   G + + +D D +TP+ +AA EG   +   L++ GASV   D   +T    
Sbjct: 293 PIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL 352

Query: 360 GRMCGNKNLIKLL 372
            +   + N++ + 
Sbjct: 353 AQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  133 bits (337), Expect = 1e-35
 Identities = 46/201 (22%), Positives = 73/201 (36%), Gaps = 25/201 (12%)

Query: 197 AAYHGDL--------YQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 248
            A +           ++ K  I AGAD+N  D D  +PL LA       +  +L++ G D
Sbjct: 132 IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD 191

Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLV---KEGASLNVDDAGSF--LCIAVARGDSDLL 303
             I +K   + L +A      G+   ++   K    +   D      L I       D +
Sbjct: 192 PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV 251

Query: 304 KRV---LSNGVDPN--------SRDYDHRTPLHVAASEGLYLMAKLLL-EAGASVFTKDR 351
                 +  G   +        S  Y  RT LH AA      + K L+ E G++   +D 
Sbjct: 252 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE 311

Query: 352 WGNTPLDEGRMCGNKNLIKLL 372
            G TP+      G   ++  L
Sbjct: 312 DGKTPIMLAAQEGRIEVVMYL 332

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  129 bits (326), Expect = 4e-34
 Identities = 25/179 (13%), Positives = 52/179 (29%), Gaps = 10/179 (5%)

Query: 203 LYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE 262
           L +           N+  +    P       G + +  F           +      L  
Sbjct: 41  LLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHT 100

Query: 263 AIKCGHDGVTSLLVKEGASLNVDDAGS-FLCIAVARGD--------SDLLKRVLSNGVDP 313
               G   +T  + +E  ++         L    +               K  ++ G D 
Sbjct: 101 EAA-GSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV 159

Query: 314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           N+ D D  TPL +A       +   L++AGA     ++   + L +     +  ++  +
Sbjct: 160 NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM 218

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  128 bits (324), Expect = 9e-34
 Identities = 45/200 (22%), Positives = 73/200 (36%), Gaps = 25/200 (12%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI--------QKGVD 248
               G     + + R   ++    +  R+ LH   S    + +  LI          G D
Sbjct: 100 TEAAGSYAITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 158

Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRV 306
           +N  D   NTPL+ A+      + + L+K GA   + +      L  A A  D  ++  +
Sbjct: 159 VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM 218

Query: 307 LSN---GVDPNSRDYDHRTPLHVAASEG---LYLMAKLLLEAGASV--------FTKDRW 352
           L++     D    D +  T L + A          AKLL+E GA V         ++   
Sbjct: 219 LNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK 278

Query: 353 GNTPLDEGRMCGNKNLIKLL 372
           G T L       N  ++K L
Sbjct: 279 GRTALHYAAQVSNMPIVKYL 298

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  106 bits (266), Expect = 9e-26
 Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 43/160 (26%)

Query: 197 AAYHGDLYQL---KGLIRAGADLNKT--------DYDGRSPLHLATSRGYEDITLFLI-Q 244
            A++    Q+   K L+  GA ++           Y GR+ LH A       I  +L+ +
Sbjct: 242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE 301

Query: 245 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLK 304
           KG + + +D+ G TP++ A + G   V   L                             
Sbjct: 302 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL----------------------------- 332

Query: 305 RVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 344
             +  G    + D    T   +A +   + +  +      
Sbjct: 333 --IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 95.8 bits (239), Expect = 5e-22
 Identities = 32/170 (18%), Positives = 53/170 (31%), Gaps = 21/170 (12%)

Query: 213 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 272
               +++    +  L  A+  GY              N    +   P  +    G+D + 
Sbjct: 27  NRKNHQSITSSQHSLLEASYDGYIKR---------QRNELQHYSLYPNPQGYGNGNDFLG 77

Query: 273 SLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASE 330
                        +  S   L    A G   + + +    V+     ++ RT LH  AS 
Sbjct: 78  DFNHTNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRESVNIIDPRHN-RTVLHWIASN 135

Query: 331 G--------LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
                    +   AK  + AGA V   D   NTPL    +   + L+  L
Sbjct: 136 SSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 185

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 19/129 (14%), Positives = 37/129 (28%), Gaps = 9/129 (6%)

Query: 244 QKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLL 303
           +K    +         LLEA   G+       ++  +                 G+  L 
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYP-------NPQGYGNGNDFLG 77

Query: 304 KRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC 363
               +N   P   + +    LH  A+ G Y + + +     ++    R   T L      
Sbjct: 78  DFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNI-IDPRHNRTVLHWIASN 135

Query: 364 GNKNLIKLL 372
            +    + L
Sbjct: 136 SSAEKSEDL 144

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.8 bits (143), Expect = 9e-10
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 249
           AA  G +  +  LI+ GA +   D    +   LA +  + +I     +   + 
Sbjct: 320 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  135 bits (342), Expect = 7e-39
 Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 4/136 (2%)

Query: 212 AGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV 271
               ++       + L  A +RG  +    L++ G D N  ++FG  P+   +  G   V
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQV 59

Query: 272 TSLLVKEGASLNV-DDAG--SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 328
             LL+  GA  N  D A     +  A   G  D L  +   G   +  D   R P+ +A 
Sbjct: 60  AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE 119

Query: 329 SEGLYLMAKLLLEAGA 344
            +G   +A+ L  A  
Sbjct: 120 EQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 78.3 bits (194), Expect = 9e-18
 Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 33/128 (25%)

Query: 246 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKR 305
              I++     +  L  A   G       L                              
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQL------------------------------ 31

Query: 306 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT-PLDEGRMCG 364
            L  G DPN+ +   R P+ V    G   +A+LLL  GA     D    T P+ +    G
Sbjct: 32  -LEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREG 89

Query: 365 NKNLIKLL 372
             + + +L
Sbjct: 90  FLDTLVVL 97

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 60.1 bits (147), Expect = 2e-11
 Identities = 22/52 (42%), Positives = 27/52 (51%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 248
           AA  G L  L  L RAGA L+  D  GR P+ LA  +G+ DI  +L     D
Sbjct: 85  AAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  134 bits (341), Expect = 8e-39
 Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 32/161 (19%)

Query: 213 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 272
           G D    ++ G + LH+A+ +G      +L+Q G D N+KD  G TPL EA   GH  V 
Sbjct: 1   GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 273 SLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL 332
            LL++  A                                 N+  Y + +PLH AA  G 
Sbjct: 60  ELLLQHKA-------------------------------LVNTTGYQNDSPLHDAAKNGH 88

Query: 333 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
             + KLLL  GAS    + +G  P+D       K+L+ L E
Sbjct: 89  VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE 129

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  118 bits (298), Expect = 2e-32
 Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 31/149 (20%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           A+  GD+  ++ L++ G+D N  D+ G +PLH A + G+  +   L+Q    +N      
Sbjct: 17  ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 316
           ++PL +A K GH  +  LL                               LS G   N+ 
Sbjct: 77  DSPLHDAAKNGHVDIVKLL-------------------------------LSYGASRNAV 105

Query: 317 DYDHRTPLHVAASEGLYLMAKLLLEAGAS 345
           +     P+     E +  +  L  +  +S
Sbjct: 106 NIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  137 bits (348), Expect = 1e-38
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 9/185 (4%)

Query: 197 AAYHGDLYQL-KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI---K 252
           A    + +++ + L    + L + D DGR PLH + S    +IT FL+ K  ++N+    
Sbjct: 9   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68

Query: 253 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF----LCIAVARGDSDLLKRVLS 308
           D  G TP   A   G+  V   L       +++   +     L +AV +   ++ + ++ 
Sbjct: 69  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128

Query: 309 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKN 367
           NG     +D  ++ PLH AAS G   + +LL   G S V  +D+ G TPL      G+ +
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188

Query: 368 LIKLL 372
              LL
Sbjct: 189 AAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  129 bits (326), Expect = 2e-35
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 223 GRSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 281
              PLH A     +  +   L  K   +  KD+ G  PL  ++      +TS L+ +  +
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 282 LNVDDAGSF-----LCIAVARGDSDLLKRVLSN--GVDPNSRDYDHRTPLHVAASEGLYL 334
           +N+DD           IA + G+ +++K +       D N       T LH+A  +  + 
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121

Query: 335 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           +++ L+E GASV  KD++   PL      G+  LI+LL
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  124 bits (313), Expect = 1e-33
 Identities = 50/179 (27%), Positives = 67/179 (37%), Gaps = 36/179 (20%)

Query: 197 AAYHGDLYQLKGLI--RAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 254
           A   G+L  +K L       DLNK    G + LHLA  + + +++ FLI+ G  + IKDK
Sbjct: 79  ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138

Query: 255 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPN 314
           F   PL  A   G   +  LL   G S                                N
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKS------------------------------AVN 168

Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEA-GASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
            +D    TPL  A +EG    A LL+E  GA     D  G    D   +  N+ + K  
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED---VALNEQVKKFF 224

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  136 bits (346), Expect = 2e-38
 Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 8/164 (4%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
               G        +     + +      +PLH A  RG        +   V +N  DK G
Sbjct: 52  GTSKGRT-----GLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAG 106

Query: 257 NTPLLEAIKCGHDGVTSLLVKE-GASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 313
           +T L  A   GH  +  +L  +    LN  +      L  A  +G +D+++ +L+ G   
Sbjct: 107 STALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART 166

Query: 314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 357
           + R+ + +    +A +     + K      A     +       
Sbjct: 167 DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDD 210

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  127 bits (321), Expect = 9e-35
 Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 4/158 (2%)

Query: 216 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 275
             K    G+  +  A           L  +  DI       +T   +    G  G+    
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64

Query: 276 VKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLM 335
                + ++D+    L  A  RG+   L+  L N V  N  D    T L+ A   G   +
Sbjct: 65  YVAEQAESIDNP---LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDI 121

Query: 336 AKLLL-EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
            ++L  +    +  +++ G+T L      G  ++++LL
Sbjct: 122 VEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  121 bits (307), Expect = 7e-33
 Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 3/138 (2%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKF 255
           AA  G+L  L+  +     +N  D  G + L+ A   G++DI   L  Q  +++N ++K 
Sbjct: 80  AAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKL 139

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 313
           G+T L  A   G+  +  LL+ +GA  ++ +        +A     + LLK+        
Sbjct: 140 GDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199

Query: 314 NSRDYDHRTPLHVAASEG 331
              + +       +  E 
Sbjct: 200 TLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 78.8 bits (195), Expect = 4e-17
 Identities = 9/72 (12%), Positives = 24/72 (33%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA+ G    ++ L+  GA  +  + + +    +AT+     +            + +   
Sbjct: 147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206

Query: 257 NTPLLEAIKCGH 268
                ++    H
Sbjct: 207 YLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 12/89 (13%), Positives = 22/89 (24%), Gaps = 3/89 (3%)

Query: 313 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           P       +  +  A           L      +       +T   +G   G   LI   
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64

Query: 373 EDAKCTQ--LSEFHY-CSQGMIGIAENLL 398
             A+  +   +  H    +G +      L
Sbjct: 65  YVAEQAESIDNPLHEAAKRGNLSWLRECL 93

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  134 bits (341), Expect = 3e-38
 Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 3/163 (1%)

Query: 213 GAD-LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV 271
           G+   +    D    L  A   G +D    L+  G D+N +D  G TPL  A   GH  +
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI 62

Query: 272 TSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 329
             +L+K GA +N  D      L +A   G  ++++ +L NG D N+ D +  TPLH+AA 
Sbjct: 63  VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM 122

Query: 330 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
            G   + ++LL+ GA V  +D++G T  D     GN++L ++L
Sbjct: 123 FGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 51.6 bits (125), Expect = 4e-08
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQK 245
           AA  G L  ++ L++ GAD+N  D  G++   ++   G ED+   L + 
Sbjct: 120 AAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  135 bits (343), Expect = 6e-38
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 11/193 (5%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA  G+L  ++  ++   D ++ + +G + LH A       I  FLI  G ++N  D  G
Sbjct: 28  AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS-----FLCIAVARGDSDLLKRVLSNGV 311
            TPL  A  C    +   LV+ GA++              C     G +D    +     
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQ 147

Query: 312 DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK----- 366
                +      L   ++E    +         +V  +D    T      + G +     
Sbjct: 148 SMGLMNSGAVYALWDYSAEFGDEL-SFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR 206

Query: 367 NLIKLLEDAKCTQ 379
           N   L    K  +
Sbjct: 207 NYFGLFPRVKPQR 219

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  123 bits (312), Expect = 2e-33
 Identities = 28/159 (17%), Positives = 57/159 (35%), Gaps = 8/159 (5%)

Query: 207 KGLIRAGADLNKTD---YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA 263
           + ++R      K      +    L  A   G  ++    +++  D +  ++ G T L  A
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61

Query: 264 IKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRD-YDH 320
           I   +  +   L+  GA++N  D+  +  L  A +  D+ +   ++ +G    +    D 
Sbjct: 62  ICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDG 121

Query: 321 RTPLHVAAS--EGLYLMAKLLLEAGASVFTKDRWGNTPL 357
            T         EG    A  L +   S+   +      L
Sbjct: 122 ATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL 160

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 13/81 (16%), Positives = 20/81 (24%), Gaps = 1/81 (1%)

Query: 191 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 250
           A         G       L      +   +      L    S  + D   F   + V + 
Sbjct: 124 AFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY-SAEFGDELSFREGESVTVL 182

Query: 251 IKDKFGNTPLLEAIKCGHDGV 271
            +D    T    A   G +G 
Sbjct: 183 RRDGPEETDWWWAALHGQEGY 203

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  132 bits (335), Expect = 1e-37
 Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 32/177 (18%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA  G   +++ L+  GA     D+ G SPLHLA   G+   T  L++ GV  + + K  
Sbjct: 9   AARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 316
            TPL  A   GH  +  +L                               L +G D N++
Sbjct: 68  RTPLHMAASEGHANIVEVL-------------------------------LKHGADVNAK 96

Query: 317 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
           D    T LH A       + +LL++ GA V T+ ++  T  D     GN++L ++L+
Sbjct: 97  DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  129 bits (328), Expect = 1e-36
 Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 34/177 (19%)

Query: 197 AAYHGDLYQLKGLI-RAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 255
           AA  GD+ +++ L+ R     +  +  G++ L +    G   I L L+++G   N++D  
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPNVQDTS 67

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 315
           G +P+ +A + G      +LV+ GA                               D N 
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGA-------------------------------DVNV 96

Query: 316 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
            D     P+H+A  EG   +   L    + +  +D  G TPL+     G ++L+ +L
Sbjct: 97  PDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  107 bits (270), Expect = 3e-28
 Identities = 34/133 (25%), Positives = 49/133 (36%), Gaps = 32/133 (24%)

Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
           L++ GA  N  D  G SP+H A   G+ D    L++ G D+N+ D  G  P+  A++ GH
Sbjct: 54  LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113

Query: 269 DGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 328
             V S L                                    D + RD    TPL +A 
Sbjct: 114 TAVVSFLAA--------------------------------ESDLHRRDARGLTPLELAL 141

Query: 329 SEGLYLMAKLLLE 341
             G   +  +L  
Sbjct: 142 QRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 88.2 bits (220), Expect = 4e-21
 Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 4/120 (3%)

Query: 256 GNTPLLEAIKCGH-DGVTSLLVKEGASLN-VDDAGSF-LCIAVARGDSDLLKRVLSNGVD 312
               L  A   G    V  LL +E    + ++  G   L +    G + +   +L  G  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGAS 60

Query: 313 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           PN +D    +P+H AA  G     K+L+E GA V   D  G  P+      G+  ++  L
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 85.5 bits (213), Expect = 3e-20
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA  G L  LK L+  GAD+N  D  G  P+HLA   G+  +  FL     D++ +D  G
Sbjct: 75  AARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARG 133

Query: 257 NTPLLEAIKCGHDGVTSLLVK 277
            TPL  A++ G   +  +L  
Sbjct: 134 LTPLELALQRGAQDLVDILQG 154

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  129 bits (328), Expect = 2e-36
 Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 33/177 (18%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA  GDL QL  L++   ++N  +  GR+ L +    G  +I   L+ +G + ++KD+ G
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTG 70

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 316
              + +A + G       L                               L    D N  
Sbjct: 71  FAVIHDAARAGFLDTLQTL-------------------------------LEFQADVNIE 99

Query: 317 DYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L+
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  109 bits (276), Expect = 5e-29
 Identities = 35/136 (25%), Positives = 51/136 (37%), Gaps = 30/136 (22%)

Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
           L+  GA+ +  D  G + +H A   G+ D    L++   D+NI+D  GN PL  A K GH
Sbjct: 56  LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115

Query: 269 DGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 328
             V   LVK  AS                              +   R++   T   +A 
Sbjct: 116 LRVVEFLVKHTAS------------------------------NVGHRNHKGDTACDLAR 145

Query: 329 SEGLYLMAKLLLEAGA 344
             G   +  L+   GA
Sbjct: 146 LYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 88.6 bits (221), Expect = 3e-21
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKF 255
           AA  G L  L+ L+   AD+N  D +G  PLHLA   G+  +  FL++    ++  ++  
Sbjct: 77  AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGA 280
           G+T    A   G + V SL+   GA
Sbjct: 137 GDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 65.9 bits (162), Expect = 3e-13
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 285 DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 344
           +  G+ L  A ARGD + L  +L N V+ N+++   RT L      G   +A+ LL  GA
Sbjct: 3   EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGA 61

Query: 345 SVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           +   KDR G   + +    G  + ++ L
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTL 89

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160

 Score =  127 bits (322), Expect = 1e-35
 Identities = 33/145 (22%), Positives = 50/145 (34%), Gaps = 9/145 (6%)

Query: 29  RKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
             I   L     ++   F+  S   +  + +        PG++I   G  +D L FV  G
Sbjct: 18  ADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSG 77

Query: 89  VLEEVGVGEDGSEETVSQLQPNSSFGEVSILC--NIPQPYTVRICELSRLLRIDKQSFTS 146
            LE +       +E V+ L     FG+V             VR      L  I + +   
Sbjct: 78  SLEVI-----QDDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQK 132

Query: 147 ILEIYFCDGRKVLTNLLEGKESNLR 171
           +LE Y         NL+     NLR
Sbjct: 133 VLEFYTAFSHSFSRNLIL--TYNLR 155

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  128 bits (323), Expect = 1e-35
 Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 37/191 (19%)

Query: 196 SAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLA----TSRGYEDITLFLIQKGVDINI 251
           +AA  G       L   G +  +      + L+             I++FLI KG DI  
Sbjct: 12  AAAMLGTYEDFLELFEKGYEDKE-SVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS 70

Query: 252 KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGV 311
           + K G T      + G + +T                         G ++L K  L  G 
Sbjct: 71  RTKEGTTLFFPLFQGGGNDIT-------------------------GTTELCKIFLEKGA 105

Query: 312 DPNSRDYDHRTPLHVAASEGLYLMAK-------LLLEAGASVFTKDRWGNTPLDEGRMCG 364
           D  +    ++  +            +       +  ++G  +  KD+WG T L+  + C 
Sbjct: 106 DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165

Query: 365 NKNLIKLLEDA 375
               +K++ED 
Sbjct: 166 KPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  111 bits (279), Expect = 3e-29
 Identities = 26/144 (18%), Positives = 41/144 (28%), Gaps = 17/144 (11%)

Query: 191 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITL------FLIQ 244
            LR N+      +     LI  GAD+     +G +        G  DIT         ++
Sbjct: 45  VLRNNNDEARYKISMF--LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLE 102

Query: 245 KGVDINIKDKFGNTPLLEAIKCGHDG-------VTSLLVKEGASLNVDDAGSF--LCIAV 295
           KG DI    K     + + I                +  + G  L + D      L    
Sbjct: 103 KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK 162

Query: 296 ARGDSDLLKRVLSNGVDPNSRDYD 319
                  LK +       N ++  
Sbjct: 163 RCQKPIALKMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 95.1 bits (237), Expect = 3e-23
 Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 7/104 (6%)

Query: 190 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDIT-------LFL 242
              +       G     K  +  GAD+       +  +       + D         L  
Sbjct: 81  PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIF 140

Query: 243 IQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 286
            Q G+ + IKDK+G T L    +C       ++       N+ +
Sbjct: 141 SQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 87.4 bits (217), Expect = 2e-20
 Identities = 19/138 (13%), Positives = 42/138 (30%), Gaps = 13/138 (9%)

Query: 250 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS-FLCIAVARGDSDLLKRV-- 306
           N   ++    +  A   G       L ++G         S  L   +   + +   ++  
Sbjct: 2   NAMSEY--RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISM 59

Query: 307 --LSNGVDPNSRDYDHRTPLHVAASEG------LYLMAKLLLEAGASVFTKDRWGNTPLD 358
             ++ G D  SR  +  T        G         + K+ LE GA +    +     + 
Sbjct: 60  FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF 119

Query: 359 EGRMCGNKNLIKLLEDAK 376
           +       +  +++   K
Sbjct: 120 KNIFNYFVDENEMIPLYK 137

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  129 bits (326), Expect = 2e-35
 Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 10/189 (5%)

Query: 191 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 250
           A+ +      G            AD+     +  +P   A  +  E     L++   D++
Sbjct: 16  AMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLLE-DRDVD 71

Query: 251 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF---LCIAVARGDSDLLKRVL 307
             D+ G T LL     G D    LL + GA L+  D       L +A      ++++ ++
Sbjct: 72  AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131

Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 367
             G D    D    T L +A            ++ G  +  +       + EG++     
Sbjct: 132 ELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK---VINVLEGQVFEYAE 188

Query: 368 LIKLLEDAK 376
           + +++E   
Sbjct: 189 VDEIVEKRG 197

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  115 bits (290), Expect = 4e-30
 Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 7/159 (4%)

Query: 217 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 276
           ++T  +G     +    G+    +       D+  +     TP   A +   +   S L+
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLL 65

Query: 277 KEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRD-YDHRTPLHVAASEGLY 333
            E   ++  D      L      G    ++ +   G D + RD     T LH+AA     
Sbjct: 66  -EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 124

Query: 334 LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
            + + L+E GA +  +D  G T L+  R           
Sbjct: 125 EVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 163

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  115 bits (290), Expect = 4e-30
 Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 16/171 (9%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 255
            A  G    ++ L  AGADL+  D   G + LH+A      ++   L++ G DI ++D+ 
Sbjct: 84  VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER 143

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 315
           G T L  A +          ++ G  + ++   + L   V            +   +   
Sbjct: 144 GLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEY---------AEVDEIVE 194

Query: 316 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRM 362
           +    +   ++   +       +     A    KD      L     E  +
Sbjct: 195 KRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 84.6 bits (210), Expect = 5e-19
 Identities = 30/126 (23%), Positives = 42/126 (33%), Gaps = 5/126 (3%)

Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-LCIAVARGDSDLLKRVL 307
            +     G    L   K GH           A  +V          A  + D   L   L
Sbjct: 8   GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA--DVVSEYETPWWTAARKADEQALS-QL 64

Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD-RWGNTPLDEGRMCGNK 366
               D ++ D + RT L   A  G     +LL EAGA +  +D R G T L         
Sbjct: 65  LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 124

Query: 367 NLIKLL 372
            +++ L
Sbjct: 125 EVVEAL 130

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 64.5 bits (158), Expect = 5e-12
 Identities = 23/117 (19%), Positives = 30/117 (25%), Gaps = 21/117 (17%)

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 315
           G    +   +   +G    L                 I    G S           D  S
Sbjct: 1   GEVNKIIGSRTAGEGAMEYL-----------------IEWKDGHSPSWVPSSYIAADVVS 43

Query: 316 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
                 TP   AA +        LLE    V   D  G T L      G+   ++LL
Sbjct: 44  EY---ETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLL 96

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 10/96 (10%), Positives = 18/96 (18%), Gaps = 24/96 (25%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDY----------------------DGRSPLHLATSRG 234
           A            ++ G  +                            G+   +L   + 
Sbjct: 151 AREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKD 210

Query: 235 YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG 270
             D          +   KD      L  A+     G
Sbjct: 211 GGDCEWVKGVHVAEDVAKDY--EDGLEYAVAESVIG 244

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  127 bits (321), Expect = 3e-35
 Identities = 35/182 (19%), Positives = 60/182 (32%), Gaps = 24/182 (13%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
               G            AD+     +  +P   A  +  E     L+ +  D++  D+ G
Sbjct: 21  EWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL-EDRDVDAVDENG 76

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSF--LCIAVARGDSDLLKRVLSNGVDP 313
            T LL     G D    LL + GA L+  D  G    L +A      ++++ ++  G D 
Sbjct: 77  RTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI 136

Query: 314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
              D    T L +A            ++ G  +                 G + +I +LE
Sbjct: 137 EVEDERGLTALELAREILKTTPKGNPMQFGRRI-----------------GLEKVINVLE 179

Query: 374 DA 375
             
Sbjct: 180 GQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  117 bits (297), Expect = 8e-32
 Identities = 31/163 (19%), Positives = 56/163 (34%), Gaps = 7/163 (4%)

Query: 213 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 272
               ++T  +G     +    G+    +       D+  + +   TP   A +   +   
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQAL 60

Query: 273 SLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRD-YDHRTPLHVAAS 329
           S L+ E   ++  D      L      G    ++ +   G D + RD     T LH+AA 
Sbjct: 61  SQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119

Query: 330 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
                + + L+E GA +  +D  G T L+  R           
Sbjct: 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 86.8 bits (216), Expect = 2e-20
 Identities = 30/130 (23%), Positives = 45/130 (34%), Gaps = 5/130 (3%)

Query: 245 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-LCIAVARGDSDLL 303
             +  +     G    L   K GH           A  +V          A  + D   L
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA--DVVSEYETPWWTAARKADEQAL 60

Query: 304 KRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD-RWGNTPLDEGRM 362
            ++L    D ++ D + RT L   A  G     +LL EAGA +  +D R G T L     
Sbjct: 61  SQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119

Query: 363 CGNKNLIKLL 372
                +++ L
Sbjct: 120 YVRPEVVEAL 129

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  125 bits (317), Expect = 6e-35
 Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 6/152 (3%)

Query: 210 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 269
           +   A  +         L  A +RG  +    L++ G + N  + +G  P+   +  G  
Sbjct: 1   MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSA 57

Query: 270 GVTSLLVKEGASLNVDDAGSF---LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHV 326
            V  LL+  GA  N  D  +    +  A   G  D L  +   G   + RD   R P+ +
Sbjct: 58  RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117

Query: 327 AASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 358
           A   G   +A+ L  A       +       +
Sbjct: 118 AEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 96.4 bits (241), Expect = 4e-24
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 4/94 (4%)

Query: 209 LIRAGADLNKTDYDGR-SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 267
           L+  GA+ N  D      P+H A   G+ D  + L + G  ++++D +G  P+  A + G
Sbjct: 63  LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG 122

Query: 268 HDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSD 301
           H  V   L          +      I  A G SD
Sbjct: 123 HRDVARYLRAAAGGTRGSNH---ARIDAAEGPSD 153

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 71.4 bits (176), Expect = 4e-15
 Identities = 20/64 (31%), Positives = 26/64 (40%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA  G L  L  L RAGA L+  D  GR P+ LA   G+ D+  +L          +   
Sbjct: 85  AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHAR 144

Query: 257 NTPL 260
               
Sbjct: 145 IDAA 148

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  125 bits (317), Expect = 7e-35
 Identities = 54/177 (30%), Positives = 75/177 (42%), Gaps = 33/177 (18%)

Query: 197 AAYHGDLYQLKGLI-RAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 255
           AA  GD+  +K L      +    +    +PLH A       +  +L+Q G D++ KDK 
Sbjct: 15  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 74

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 315
           G  PL  A   GH  V  LL                               + +G   N 
Sbjct: 75  GLVPLHNACSYGHYEVAELL-------------------------------VKHGAVVNV 103

Query: 316 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
            D    TPLH AA++G Y + KLLL+ GA    K+R GNTPLD  +  G+ ++  LL
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  110 bits (277), Expect = 4e-29
 Identities = 41/161 (25%), Positives = 56/161 (34%), Gaps = 35/161 (21%)

Query: 213 GADLNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKFGNTPLLEAIKCGHDGV 271
           GA  N    +    L  A   G  +    L   + V+    +   +TPL  A       V
Sbjct: 1   GAMGNS---EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57

Query: 272 TSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEG 331
              L                               L +G D +++D     PLH A S G
Sbjct: 58  VEYL-------------------------------LQHGADVHAKDKGGLVPLHNACSYG 86

Query: 332 LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
            Y +A+LL++ GA V   D W  TPL E    G   + KLL
Sbjct: 87  HYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 127

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  109 bits (276), Expect = 6e-29
 Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 32/148 (21%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA +  +  ++ L++ GAD++  D  G  PLH A S G+ ++   L++ G  +N+ D + 
Sbjct: 49  AAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK 108

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 316
            TPL EA   G   +  LL                               L +G DP  +
Sbjct: 109 FTPLHEAAAKGKYEICKLL-------------------------------LQHGADPTKK 137

Query: 317 DYDHRTPLHVAASEGLYLMAKLLLEAGA 344
           + D  TPL +   +G   +  LL    A
Sbjct: 138 NRDGNTPLDLVK-DGDTDIQDLLRGDAA 164

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  128 bits (323), Expect = 7e-35
 Identities = 27/166 (16%), Positives = 56/166 (33%), Gaps = 6/166 (3%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
                        I  G  +        + L  ++  G  D+   +I +  D ++ +  G
Sbjct: 12  GKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEG 70

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 314
            T L  A+  GH  +   LV+ G ++N  D+  +  L  A +  +  + K ++ +G    
Sbjct: 71  ITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF 130

Query: 315 SRDYDH---RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 357
           +  Y              EG    ++ L      +   ++     L
Sbjct: 131 AMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL 176

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  122 bits (309), Expect = 6e-33
 Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 8/160 (5%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           ++  G+   ++ +I    D +  + +G + LH A   G+ +I  FL+Q GV++N  D  G
Sbjct: 44  SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSF----LCIAVARGDSDLLKRVLSNGV 311
            TPL  A  C +  V   LV+ GA++  +  +        C  +  G +   + +     
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163

Query: 312 DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR 351
                +      L     +      +L ++ G  +    R
Sbjct: 164 KMGIMNKGVIYALWDYEPQN---DDELPMKEGDCMTIIHR 200

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  120 bits (304), Expect = 3e-32
 Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 6/158 (3%)

Query: 220 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG 279
           +  G+  L               I  G+ +          LL++   G   +   ++ E 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDSSLEGEFDLVQRIIYEV 60

Query: 280 ASLNV-DDAGSF-LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAK 337
              ++ +D G   L  AV  G ++++K ++  GV+ N+ D D  TPLH AAS     + K
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK 120

Query: 338 LLLEAGASVFTK---DRWGNTPLDEGRMCGNKNLIKLL 372
            L+E+GA+VF     D        E    G     + L
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 7/78 (8%), Positives = 20/78 (25%), Gaps = 5/78 (6%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
               G     + L      +   +      L     +  +++    +++G  + I  +  
Sbjct: 146 EMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL---PMKEGDCMTIIHRED 202

Query: 257 N--TPLLEAIKCGHDGVT 272
                   A     +G  
Sbjct: 203 EDEIEWWWARLNDKEGYV 220

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  127 bits (322), Expect = 7e-35
 Identities = 41/207 (19%), Positives = 76/207 (36%), Gaps = 31/207 (14%)

Query: 197 AAYHGDLYQL-KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI-----N 250
           AA   D+  L K L   G ++++    G + LH+A      +  + L++   ++      
Sbjct: 10  AAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMT 69

Query: 251 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF---------------LCIAV 295
            +   G T L  A+   +  +   L+  GAS++    GS                L  A 
Sbjct: 70  SELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA 129

Query: 296 ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEG----LYLMAKLLLEAGASV----- 346
             G  ++++ ++ +G D  ++D    T LH+   +        M  LLL           
Sbjct: 130 CVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL 189

Query: 347 -FTKDRWGNTPLDEGRMCGNKNLIKLL 372
               +  G TP     + GN  + + L
Sbjct: 190 ELVPNNQGLTPFKLAGVEGNIVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  106 bits (268), Expect = 4e-27
 Identities = 47/215 (21%), Positives = 82/215 (38%), Gaps = 39/215 (18%)

Query: 223 GRSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 281
             SPL LA      + ++  L  +G +++ +   G T L  A    +     +L++    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 282 LNV------DDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRT------------ 322
           L           G + L IAV   + +L++ +L+ G   ++R                  
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122

Query: 323 -PLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN----LIKLL----- 372
            PL  AA  G   + +LL+E GA +  +D  GNT L    +  NK     +  LL     
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDG 182

Query: 373 -EDAKCTQLSE-------FHY-CSQGMIGIAENLL 398
            +  K  +L         F     +G I + ++L+
Sbjct: 183 GDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM 217

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  128 bits (323), Expect = 1e-33
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 22/183 (12%)

Query: 212 AGADLNKTDYDGRSPLHLATSRG--YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 269
                +     G++ LH     G  Y ++   L+Q G     KDK   TPL+ A++  + 
Sbjct: 127 NEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNR 186

Query: 270 GVTSLLV-----KEGASLNV-DDAGSF-LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRT 322
               L++     K    L+  +  G+  L  A+     D+  R +  G+D N  D +H  
Sbjct: 187 EALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTV 246

Query: 323 PLHVAASEGLYLMAKLLLEAGAS-------------VFTKDRWGNTPLDEGRMCGNKNLI 369
           PL+++    + L+ K LL+                 V          +        + ++
Sbjct: 247 PLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL 306

Query: 370 KLL 372
           +LL
Sbjct: 307 QLL 309

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  124 bits (313), Expect = 3e-32
 Identities = 36/193 (18%), Positives = 66/193 (34%), Gaps = 35/193 (18%)

Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
                 +  K+D +    +H+A  +G  D    LI+ GV   I+++FG T L  A K G 
Sbjct: 6   TDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGC 65

Query: 269 DGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 328
                 L   G   ++      + +AV    +DL+  ++    +        + P  +  
Sbjct: 66  VDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLN 119

Query: 329 SEGLYLMAKL-----------------------------LLEAGASVFTKDRWGNTPLDE 359
                 + ++                             L++ GAS   KD+   TPL  
Sbjct: 120 ECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR 179

Query: 360 GRMCGNKNLIKLL 372
                N+  + L+
Sbjct: 180 AMEFRNREALDLM 192

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 88.0 bits (219), Expect = 2e-19
 Identities = 10/115 (8%), Positives = 24/115 (20%), Gaps = 31/115 (26%)

Query: 213 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 272
           G  +          +  A     +++   L +K  ++      G    ++  K     V 
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVK 339

Query: 273 SLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVA 327
            +                                L+      +R         V+
Sbjct: 340 RMK-------------------------------LAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 76.4 bits (189), Expect = 1e-15
 Identities = 5/64 (7%), Positives = 16/64 (25%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA       L+ L     ++ ++   G         +    +    +     +  + +  
Sbjct: 297 AADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSR 356

Query: 257 NTPL 260
               
Sbjct: 357 ARSS 360

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198

 Score =  122 bits (309), Expect = 2e-33
 Identities = 29/147 (19%), Positives = 65/147 (44%), Gaps = 10/147 (6%)

Query: 29  RKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
           + ++       +  V  F G  S F+ ++V  L  E F P + ++++G   D+++F+  G
Sbjct: 62  QDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQG 121

Query: 89  VLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSIL 148
           +++   +  DG     + L   S FGE+ +L    +  +V+      L  +  Q F  +L
Sbjct: 122 IVDI--IMSDG--VIATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVL 177

Query: 149 EIYFCDGRKVLTNLLEGKESNLRLKQV 175
           + +    + +       + +  RL ++
Sbjct: 178 DEFPAMRKTME------EIAVRRLTRI 198

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202

 Score =  120 bits (303), Expect = 2e-32
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 5/123 (4%)

Query: 29  RKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
            KI        +  + LF      F+  ++ +L  E F PG+ I+ +G +  ++YF+ HG
Sbjct: 63  EKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG 122

Query: 89  VLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSIL 148
           V+    V   G++E    L   S FGE+ +L    +  +VR     RL  +   +F  +L
Sbjct: 123 VVS---VLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVL 177

Query: 149 EIY 151
           E Y
Sbjct: 178 EEY 180

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  114 bits (289), Expect = 2e-31
 Identities = 42/145 (28%), Positives = 56/145 (38%), Gaps = 33/145 (22%)

Query: 213 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 272
           G        DG +PLH A   G+ +    L+ KG D+N + K GNTPL  A K GH  + 
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 273 SLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL 332
            LL                               L+ G D N+R  D  TP H+A   G 
Sbjct: 59  KLL-------------------------------LAKGADVNARSKDGNTPEHLAKKNGH 87

Query: 333 YLMAKLLLEAGASVFTKDRWGNTPL 357
           + + KLL   GA V  +    +   
Sbjct: 88  HEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  101 bits (254), Expect = 2e-26
 Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 31/129 (24%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA +G   ++K L+  GAD+N    DG +PLHLA   G+ +I   L+ KG D+N + K G
Sbjct: 16  AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG 75

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 316
           NTP   A K GH  +  LL                                + G D N+R
Sbjct: 76  NTPEHLAKKNGHHEIVKLL-------------------------------DAKGADVNAR 104

Query: 317 DYDHRTPLH 325
            +      H
Sbjct: 105 SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 76.6 bits (190), Expect = 2e-17
 Identities = 40/124 (32%), Positives = 49/124 (39%), Gaps = 31/124 (25%)

Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS 308
                K GNTPL  A K GH      L                               LS
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKL-------------------------------LS 30

Query: 309 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 368
            G D N+R  D  TPLH+AA  G   + KLLL  GA V  + + GNTP    +  G+  +
Sbjct: 31  KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEI 90

Query: 369 IKLL 372
           +KLL
Sbjct: 91  VKLL 94

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  115 bits (290), Expect = 2e-31
 Identities = 58/148 (39%), Positives = 76/148 (51%), Gaps = 31/148 (20%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA +G L  +K L+ AGAD+N  D +GR+PLHLA   G+ ++   L++ G D+N KDK G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 316
            TPL  A + GH  V  LL                               L  G D N++
Sbjct: 69  RTPLHLAARNGHLEVVKLL-------------------------------LEAGADVNAK 97

Query: 317 DYDHRTPLHVAASEGLYLMAKLLLEAGA 344
           D + RTPLH+AA  G   + KLLLEAGA
Sbjct: 98  DKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 67.0 bits (165), Expect = 6e-14
 Identities = 42/117 (35%), Positives = 52/117 (44%), Gaps = 31/117 (26%)

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 315
           G TPL  A + GH  V  LL                               L  G D N+
Sbjct: 2   GRTPLHLAARNGHLEVVKLL-------------------------------LEAGADVNA 30

Query: 316 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           +D + RTPLH+AA  G   + KLLLEAGA V  KD+ G TPL      G+  ++KLL
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  114 bits (289), Expect = 2e-31
 Identities = 41/135 (30%), Positives = 53/135 (39%), Gaps = 31/135 (22%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           A  +GDL ++K  +  G D+N+T   GR PLH A   G  +I  FL+ KG DIN  DK  
Sbjct: 14  ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 316
            TPLL A+  GH     LL                               LS G D   +
Sbjct: 74  ITPLLSAVYEGHVSCVKLL-------------------------------LSKGADKTVK 102

Query: 317 DYDHRTPLHVAASEG 331
             D  T      ++ 
Sbjct: 103 GPDGLTAFEATDNQA 117

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  112 bits (283), Expect = 2e-30
 Identities = 37/149 (24%), Positives = 47/149 (31%), Gaps = 31/149 (20%)

Query: 222 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 281
                   A   G  D     + KG D+N   + G  PL  A  CG   +   L+ +GA 
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA- 64

Query: 282 LNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 341
                                         D N+ D  H TPL  A  EG     KLLL 
Sbjct: 65  ------------------------------DINAPDKHHITPLLSAVYEGHVSCVKLLLS 94

Query: 342 AGASVFTKDRWGNTPLDEGRMCGNKNLIK 370
            GA    K   G T  +       K L++
Sbjct: 95  KGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212

 Score =  115 bits (291), Expect = 1e-30
 Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 8/145 (5%)

Query: 29  RKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
             I+  L    + ++ LF+  S   +  + + +   F  PGE ++ QG+ +  +YFVC G
Sbjct: 67  ADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSG 125

Query: 89  VLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYT--VRICELSRLLRIDKQSFTS 146
            +E +          ++ L      G  S+           V+      L  I  +    
Sbjct: 126 SMEVL-----KDNTVLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQYISLKGLRE 180

Query: 147 ILEIYFCDGRKVLTNLLEGKESNLR 171
           +L +Y    +K ++ +      NLR
Sbjct: 181 VLRLYPEYAQKFVSEIQHDLTYNLR 205

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  111 bits (281), Expect = 6e-30
 Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 32/161 (19%)

Query: 213 GAD-LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV 271
           G+   +    D    L  A   G +D    L+  G D+N KD++G TPL  A   GH  +
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEI 62

Query: 272 TSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEG 331
             +L                               L NG D N+ D    TPLH+AA  G
Sbjct: 63  VEVL-------------------------------LKNGADVNAVDAIGFTPLHLAAFIG 91

Query: 332 LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
              +A++LL+ GA V  +D++G T  D     GN++L ++L
Sbjct: 92  HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  104 bits (261), Expect = 3e-27
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 31/145 (21%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA  G   +++ L+  GAD+N  D  G +PL+LAT+ G+ +I   L++ G D+N  D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 316
            TPL  A   GH  +  +L                               L +G D N++
Sbjct: 81  FTPLHLAAFIGHLEIAEVL-------------------------------LKHGADVNAQ 109

Query: 317 DYDHRTPLHVAASEGLYLMAKLLLE 341
           D   +T   ++   G   +A++L +
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 74.3 bits (184), Expect = 2e-16
 Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 32/129 (24%)

Query: 245 KGVDINIKD-KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLL 303
           +G   +          LLEA + G D    +L                            
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRIL---------------------------- 33

Query: 304 KRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC 363
              ++NG D N++D    TPL++A + G   + ++LL+ GA V   D  G TPL      
Sbjct: 34  ---MANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI 90

Query: 364 GNKNLIKLL 372
           G+  + ++L
Sbjct: 91  GHLEIAEVL 99

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  117 bits (293), Expect = 7e-30
 Identities = 34/184 (18%), Positives = 58/184 (31%), Gaps = 22/184 (11%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG----YEDITLFLIQKGVDINIK 252
                +L  +K L++ G++    D  G S L  A               L      + ++
Sbjct: 138 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 197

Query: 253 DKFGNTPL------------LEAIKCGHDGVTSLLVKEGASLNVDD------AGSFLCIA 294
           D    T L              A K   D +   +VK+                +     
Sbjct: 198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 257

Query: 295 VARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN 354
                 + L          N++D +  T L++AA  G   +   LL+ GA  F  ++ G 
Sbjct: 258 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL 317

Query: 355 TPLD 358
            P+D
Sbjct: 318 RPVD 321

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  105 bits (263), Expect = 9e-26
 Identities = 35/187 (18%), Positives = 66/187 (35%), Gaps = 23/187 (12%)

Query: 209 LIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 267
                 +LN   D  G +PLH  TS    ++   L++ G +    D  G + L++A+K  
Sbjct: 116 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV 175

Query: 268 H----DGVTSLLVKEGASLNVDD-------------AGSFLCIAVARGDSD-LLKRVLSN 309
           +        +LL      L ++D             +G   C A A+   D L+  ++  
Sbjct: 176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 235

Query: 310 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF----TKDRWGNTPLDEGRMCGN 365
              P     + +       +          L+    +      +D  G+T L+     GN
Sbjct: 236 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN 295

Query: 366 KNLIKLL 372
            +++  L
Sbjct: 296 ISIVDAL 302

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 69.7 bits (170), Expect = 2e-13
 Identities = 24/154 (15%), Positives = 42/154 (27%), Gaps = 22/154 (14%)

Query: 197 AAYHGDLYQLKG----LIRAGADLNKTDYDGRSPLHLA-----------TSRGYEDITL- 240
           A    + Y        L      L   D   R+ LH              ++ Y DI + 
Sbjct: 171 AVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMG 230

Query: 241 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV-----DDAG-SFLCIA 294
           ++++K                              +     +       D  G + L IA
Sbjct: 231 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA 290

Query: 295 VARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 328
              G+  ++  +L  G DP   +     P+   A
Sbjct: 291 ARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 68.1 bits (166), Expect = 7e-13
 Identities = 18/66 (27%), Positives = 25/66 (37%)

Query: 195 NSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 254
           N       L  L         LN  D +G + L++A   G   I   L+  G D  I +K
Sbjct: 255 NGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK 314

Query: 255 FGNTPL 260
            G  P+
Sbjct: 315 SGLRPV 320

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161

 Score =  109 bits (275), Expect = 6e-29
 Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 1/123 (0%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDG 99
            + + LFK    E ++Q++  + E+    GE +++QG+  D  Y +  G  + + V  DG
Sbjct: 40  CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDG 98

Query: 100 SEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVL 159
               V       SFGE++++ N P+  T+       L  +D+ +F  I+       RK+ 
Sbjct: 99  VGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMY 158

Query: 160 TNL 162
            + 
Sbjct: 159 ESF 161

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  109 bits (274), Expect = 1e-27
 Identities = 32/188 (17%), Positives = 54/188 (28%), Gaps = 39/188 (20%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTD--------------YDGRSPLHLATSRGYEDITLFL 242
           A    ++  +  L+  GAD+                  Y G  PL LA       I  FL
Sbjct: 108 AIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167

Query: 243 IQKG---VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGD 299
           +Q      DI+ +D  GNT L   ++   + V +          +   G           
Sbjct: 168 LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG----------- 216

Query: 300 SDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 359
                ++          +    TPL +AAS G   +   +L+                  
Sbjct: 217 ----AKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHA 265

Query: 360 GRMCGNKN 367
                + +
Sbjct: 266 AAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 90.2 bits (224), Expect = 1e-20
 Identities = 30/186 (16%), Positives = 49/186 (26%), Gaps = 45/186 (24%)

Query: 212 AGADLNKTDYDGRSPLHLATSRGYE-------DITLFLIQKGVDINIKD-KFGNTPLLEA 263
             A         R  +  A ++                 ++  D   KD + G T LL+A
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 264 ---IKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDH 320
              +  G +   +LL+      +                                  Y  
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQFV--------------------NASYTDSYYKG 101

Query: 321 RTPLHVAASEGLYLMAKLLLEAGASVFTKDR--------------WGNTPLDEGRMCGNK 366
           +T LH+A       +  LL+E GA V                   +G  PL         
Sbjct: 102 QTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161

Query: 367 NLIKLL 372
            ++K L
Sbjct: 162 AIVKFL 167

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 7/83 (8%)

Query: 186 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQK 245
                  +F ++ Y+  L     L         T+  G +PL LA S G   +  +++Q+
Sbjct: 196 DNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255

Query: 246 GVDINIKDKFGNTPLLEAIKCGH 268
            +               A    H
Sbjct: 256 EIH-------EPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 14/76 (18%), Positives = 19/76 (25%), Gaps = 11/76 (14%)

Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA-------GASVFTKDR-WGNTPL-- 357
           S            R  +  A ++      + LL               KD   G T L  
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60

Query: 358 -DEGRMCGNKNLIKLL 372
                  G  + I LL
Sbjct: 61  AMLNLHNGQNDTIALL 76

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  105 bits (264), Expect = 2e-26
 Identities = 34/174 (19%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTD-------------YDGRSPLHLATSRGYEDITLFLI 243
           A     L  +K L+  GAD++                Y G  PL LA      D+  +L+
Sbjct: 97  AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156

Query: 244 QKGV---DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS 300
           +       +   D  GNT L   +    +                   S L I +  G  
Sbjct: 157 ENPHQPASLEATDSLGNTVLHALVMIADN---------------SPENSALVIHMYDGLL 201

Query: 301 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN 354
            +  R+          ++   TPL +AA EG   + + +L+   S        +
Sbjct: 202 QMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  104 bits (260), Expect = 6e-26
 Identities = 34/178 (19%), Positives = 54/178 (30%), Gaps = 35/178 (19%)

Query: 213 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-------------KFGNTP 259
            A      Y G S LH+A  +        L++ G D++++               FG  P
Sbjct: 80  NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139

Query: 260 LLEAIKCGHDGVTSLLVKEG---ASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 314
           L  A       V + L++     ASL   D+     L   V   D               
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD--------------- 184

Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
             +    + L +   +GL  M   L          +  G TPL      G   + + +
Sbjct: 185 --NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 98.7 bits (246), Expect = 6e-24
 Identities = 37/187 (19%), Positives = 56/187 (29%), Gaps = 43/187 (22%)

Query: 196 SAAYHGDLYQLKGLI--------RAGADLNKTDYDGRSPLHLA---TSRGYEDITLFLIQ 244
           S    G   +L GL+                    G++ L  A      G     + L+Q
Sbjct: 8   SVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQ 67

Query: 245 KG-----------VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI 293
                             +   G++ L  AI+        LLV+ GA +++   G F   
Sbjct: 68  IDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQK 127

Query: 294 AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG---ASVFTKD 350
                                +  Y    PL +AA    + +   LLE     AS+   D
Sbjct: 128 ------------------HQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATD 169

Query: 351 RWGNTPL 357
             GNT L
Sbjct: 170 SLGNTVL 176

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 74.1 bits (182), Expect = 3e-15
 Identities = 29/176 (16%), Positives = 47/176 (26%), Gaps = 45/176 (25%)

Query: 221 YDGRSPLHLATSRGY----EDITLFLIQKG----VDINIKDKFGNTPLLEAIKCGHDG-- 270
           +D R  L    SRG       +  +L             +   G T L++A+    DG  
Sbjct: 1   FD-RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVN 59

Query: 271 -VTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 329
                L++                                        Y   + LH+A  
Sbjct: 60  ACIMPLLQIDKDSGNPK--------------------PLVNAQCTDEFYQGHSALHIAIE 99

Query: 330 EGLYLMAKLLLEAGASVFTKDR-------------WGNTPLDEGRMCGNKNLIKLL 372
           +      KLL+E GA V  +               +G  PL         +++  L
Sbjct: 100 KRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 23/118 (19%), Positives = 34/118 (28%), Gaps = 23/118 (19%)

Query: 189 ELALRFNSAAYHGDLYQLKGLIRAG---ADLNKTDYDGRSPLHL---------------- 229
           EL L   +     D+     L+      A L  TD  G + LH                 
Sbjct: 137 ELPLSLAACTKQWDVVTY--LLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVI 194

Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA 287
               G   +   L        I +  G TPL  A K G   +   +++     +   A
Sbjct: 195 HMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF--SGAAA 250

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 97.0 bits (243), Expect = 4e-25
 Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 31/123 (25%)

Query: 222 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 281
           +GR+PLHLA   G+ ++   L++ G D+N KDK G TPL  A + GH  V  LL++ GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA- 59

Query: 282 LNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 341
                                         D N++D + RTPLH+AA  G   + KLLLE
Sbjct: 60  ------------------------------DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

Query: 342 AGA 344
           AGA
Sbjct: 90  AGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 94.0 bits (235), Expect = 6e-24
 Identities = 39/84 (46%), Positives = 54/84 (64%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA +G L  +K L+ AGAD+N  D +GR+PLHLA   G+ ++   L++ G D+N KDK G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGA 280
            TPL  A + GH  V  LL++ GA
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 67.0 bits (165), Expect = 3e-14
 Identities = 42/117 (35%), Positives = 52/117 (44%), Gaps = 31/117 (26%)

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 315
           G TPL  A + GH  V  LL                               L  G D N+
Sbjct: 2   GRTPLHLAARNGHLEVVKLL-------------------------------LEAGADVNA 30

Query: 316 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           +D + RTPLH+AA  G   + KLLLEAGA V  KD+ G TPL      G+  ++KLL
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 50.0 bits (121), Expect = 2e-08
 Identities = 27/54 (50%), Positives = 34/54 (62%)

Query: 319 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           + RTPLH+AA  G   + KLLLEAGA V  KD+ G TPL      G+  ++KLL
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 99.9 bits (249), Expect = 3e-24
 Identities = 43/234 (18%), Positives = 69/234 (29%), Gaps = 57/234 (24%)

Query: 196 SAAYHGDLYQLKG----LIRAGADLNKTDY----DGRSPLHLA---TSRGYEDITLFLIQ 244
                G    L+G    L+     L   ++     G++ L  A    S G  D    L+ 
Sbjct: 11  DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD 70

Query: 245 KG-----------VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--- 290
                                 G T L  AI+        LLV++GA ++    G F   
Sbjct: 71  IAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQP 130

Query: 291 -------------LCIAVARGDSDLLKRVLSNG---VDPNSRDYDHRTPLHVAA------ 328
                        L +A       ++  +  NG    D   +D    T LH         
Sbjct: 131 KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNT 190

Query: 329 ---SEGLYLMAKLLLEAGASVFTK-------DRWGNTPLDEGRMCGNKNLIKLL 372
              ++ +  M  LLL   A +F         +  G +PL      G   + + +
Sbjct: 191 RENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 96.0 bits (239), Expect = 6e-23
 Identities = 31/176 (17%), Positives = 54/176 (30%), Gaps = 50/176 (28%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTD--------------YDGRSPLHLATSRGYEDITLFL 242
           A      + ++ L+  GAD++                 Y G  PL LA       I  +L
Sbjct: 100 AIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

Query: 243 IQKG---VDINIKDKFGNTPLLEAIKCGHD---------GVTSLLVKEGASLNVDDAGSF 290
            + G    D+  +D  GNT L   +    +          +  LL+ + A L  D     
Sbjct: 160 TENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN--- 216

Query: 291 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 346
                                     + D  +PL +AA  G   + + ++    + 
Sbjct: 217 ---------------------LEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 79.8 bits (197), Expect = 4e-17
 Identities = 32/178 (17%), Positives = 58/178 (32%), Gaps = 46/178 (25%)

Query: 220 DYDGRSPLHLATSRG----YEDITLFLIQKGVDINIKD----KFGNTPLLEA---IKCGH 268
            ++ R  L    SRG     E +  FL+     +  ++      G T L +A   +  G 
Sbjct: 3   VFN-RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGR 61

Query: 269 DGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 328
           +    +L                 + +A    ++ + + S         Y  +T LH+A 
Sbjct: 62  NDTIPIL-----------------LDIAEKTGNMREFINSPF---RDVYYRGQTALHIAI 101

Query: 329 SEGLYLMAKLLLEAGASVFTKDR--------------WGNTPLDEGRMCGNKNLIKLL 372
                   +LL+E GA V  + R              +G  PL         +++  L
Sbjct: 102 ERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 21/114 (18%)

Query: 189 ELALRFNSAAYHGDLYQLKGLIRAG---ADLNKTDYDGRSPLHLATSRGYE--------- 236
           EL L    AA     + +  L   G   ADL + D  G + LH   +             
Sbjct: 141 ELPLSL--AACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVT 198

Query: 237 DITLFLIQKGVDIN-------IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN 283
            +   L+ K   +        + +  G +PL+ A K G  G+   +++   +  
Sbjct: 199 KMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 7/53 (13%)

Query: 209 LIRAGADLNKT-------DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 254
           L+   A L          + DG SPL +A   G   I   +I++ +       
Sbjct: 204 LLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137

 Score = 94.9 bits (236), Expect = 1e-23
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 10/122 (8%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVG-VGED 98
           + +V LF+      ++ I  RL    F     ++ +G+ ++++ F+  G LE V   G  
Sbjct: 8   VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67

Query: 99  GSEETVSQLQPNSSFGEVSILCNIPQP---------YTVRICELSRLLRIDKQSFTSILE 149
                 S L+     G+  +   +             TV+         +       +  
Sbjct: 68  SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127

Query: 150 IY 151
            +
Sbjct: 128 QF 129

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 93.4 bits (233), Expect = 2e-23
 Identities = 33/143 (23%), Positives = 51/143 (35%), Gaps = 34/143 (23%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
            + H   +   GL+  G+ +     D    L  A   G +D    L+  G D+  KDK G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 316
           +TPL  A + GH  V  LL                               L  G D  ++
Sbjct: 58  STPLHLAARNGHLEVVKLL-------------------------------LEAGADVXAQ 86

Query: 317 DYDHRTPLHVAASEGLYLMAKLL 339
           D   +T   ++   G   +A++L
Sbjct: 87  DKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 93.0 bits (232), Expect = 2e-23
 Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 34/144 (23%)

Query: 230 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 289
            +S  +   +  L+ +G  +          LLEA + G D    +L+  GA         
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGA--------- 48

Query: 290 FLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 349
                                 D  ++D +  TPLH+AA  G   + KLLLEAGA V  +
Sbjct: 49  ----------------------DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86

Query: 350 DRWGNTPLDEGRMCGNKNLIKLLE 373
           D++G T  D     GN++L ++L+
Sbjct: 87  DKFGKTAFDISIDNGNEDLAEILQ 110

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187

 Score = 86.0 bits (213), Expect = 5e-20
 Identities = 22/135 (16%), Positives = 56/135 (41%)

Query: 37  MPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVG 96
           +  + K+ LF   S+E +  +   +          ++ +G+  D L  +  G +  +   
Sbjct: 38  LEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDI 97

Query: 97  EDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGR 156
            +   +T++++   +  GE+S++  +P+  +      +    + + +   +L      G 
Sbjct: 98  PNKGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGN 157

Query: 157 KVLTNLLEGKESNLR 171
           KVL  LL+   +  R
Sbjct: 158 KVLIRLLQLLTARFR 172

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139

 Score = 83.9 bits (208), Expect = 9e-20
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDG 99
           I      K      I +IV  ++   +     I+++G+V   +Y +  G   +V V ++G
Sbjct: 25  ILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDG---KVEVTKEG 81

Query: 100 SEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
               +  + P   FGE++IL N  +  TV+     +L  ID+Q F +I+ 
Sbjct: 82  --VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMM 129

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 86.8 bits (215), Expect = 1e-19
 Identities = 27/131 (20%), Positives = 63/131 (48%), Gaps = 4/131 (3%)

Query: 18  RYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGN 77
           R      L       + +Y   ++ + + K  ++    ++   L  + + PGE I+ +G+
Sbjct: 105 RLTFRKILLGSSFKKRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGD 164

Query: 78  VIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLL 137
             +  Y + +G    V V + G +  +++L+ +  FGEV++L ++P+  TV   + +++ 
Sbjct: 165 QGENFYLIEYG---AVDVSKKG-QGVINKLKDHDYFGEVALLNDLPRQATVTATKRTKVA 220

Query: 138 RIDKQSFTSIL 148
            + K  F  +L
Sbjct: 221 TLGKSGFQRLL 231

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 76.0 bits (187), Expect = 5e-16
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 5/125 (4%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDG 99
           I    LF    S+    ++  L E+    G  I++QG+  D  Y V  G    V    + 
Sbjct: 9   IRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKG---TVDFYVND 65

Query: 100 SEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVL 159
               V+   P SSFGE++++ N P+  TV       L  +D+ +F  IL       R + 
Sbjct: 66  --NKVNSSGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMY 123

Query: 160 TNLLE 164
            +LL+
Sbjct: 124 DDLLK 128

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138

 Score = 83.5 bits (207), Expect = 1e-19
 Identities = 31/138 (22%), Positives = 48/138 (34%), Gaps = 13/138 (9%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDG 99
           +  V LF+      + +IV  L       G VI   G   D+++FV  G    V V    
Sbjct: 13  VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEG---SVSV---- 65

Query: 100 SEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVL 159
           +     +L P + FGE++++   P+  TV       LL +    F  +            
Sbjct: 66  ATPNPVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 125

Query: 160 TNLLEGKESNLRLKQVES 177
              LE      R     S
Sbjct: 126 KTALE------RRGAAAS 137

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154

 Score = 83.2 bits (206), Expect = 2e-19
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDG 99
           IEK  LF        + I   +    F+ GE +++QG+  D  Y +  G   E+ V  + 
Sbjct: 40  IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQG---EMDVYVNN 96

Query: 100 SEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
             E  + +    SFGE++++   P+  TV+     +L  ID+ S+  IL 
Sbjct: 97  --EWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILM 144

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149

 Score = 82.7 bits (205), Expect = 3e-19
 Identities = 27/154 (17%), Positives = 56/154 (36%), Gaps = 14/154 (9%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDG 99
           + +  LF     E   ++   + E     G+ +  +G+  D+LY V  G ++      DG
Sbjct: 7   LRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDG 66

Query: 100 SEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVL 159
            E  ++ + P+   GE+S+    P+  T       +LL +        L +       +L
Sbjct: 67  RENMLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALL 126

Query: 160 TNLLEGKESNLRLKQVESDITFHIGKHEAELALR 193
             +        RL++    +        ++L   
Sbjct: 127 RAVAR------RLRKTNDAM--------SDLVFS 146

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 87.1 bits (215), Expect = 6e-19
 Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 1/125 (0%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDG 99
            + + LFK    E ++Q++  + E+    GE +++QG+  D  Y +  G   ++ V  DG
Sbjct: 147 CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGT-FDIYVKCDG 205

Query: 100 SEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVL 159
               V       SFGE++++ N P+  T+       L  +D+ +F  I+       RK+ 
Sbjct: 206 VGRCVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMY 265

Query: 160 TNLLE 164
            + +E
Sbjct: 266 ESFIE 270

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 84.8 bits (209), Expect = 3e-18
 Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 36  YMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLE---- 91
           Y  +IE +   K        ++V  +  + +  GE I+ QG++ D  + V  G ++    
Sbjct: 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMK 324

Query: 92  --EVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSIL 148
                  E+     +++      FGE++++ N P+  +       + L +D Q+F  +L
Sbjct: 325 RKGKSEVEENGAVEIARCFRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLL 383

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 86.2 bits (213), Expect = 1e-18
 Identities = 36/306 (11%), Positives = 74/306 (24%), Gaps = 68/306 (22%)

Query: 159 LTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNK 218
           L  L     +    +         I              +   D   L  L+ +   +  
Sbjct: 66  LLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDT--LCLLLTSDEIVKV 123

Query: 219 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF--GNTPLLEAIKCGHDGVTSLLV 276
              +      LA   G+  +   L +      +             A + GH  V + L 
Sbjct: 124 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLC 183

Query: 277 KEGASLNVDDAGS-----FLCIAVARGDSDLLKRVLSNGVDPNSRDY------------- 318
           +   +       +     F   AV RG  +++  +L   V     +              
Sbjct: 184 ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPF 243

Query: 319 ---------DHRTPLHVAASEGL--------------------------------YLMAK 337
                    +      ++  +G+                                +L++ 
Sbjct: 244 IARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSI 303

Query: 338 LLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL----EDAKCTQLSEFHYCSQ-GMIG 392
             ++A A   T     N  L      GN+    LL         T+ + ++     G + 
Sbjct: 304 PGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLD 363

Query: 393 IAENLL 398
           +    L
Sbjct: 364 LRAVAL 369

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 80.4 bits (198), Expect = 8e-17
 Identities = 35/214 (16%), Positives = 59/214 (27%), Gaps = 39/214 (18%)

Query: 191 ALRFNSAAYHGDLYQLKGLIRAGADLNKTD---YDGRSPLHLATSRGYEDITLFLIQKGV 247
           A R   AA +G L+ L  L               +  +    A  RG+ ++  FL+   V
Sbjct: 166 AFRL--AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223

Query: 248 DINIKDKFG------------------NTPLLEAIKCGH-DGVTSLLVKEGASLNVDDAG 288
            +   +                        + +A K  + DGV  L+ K           
Sbjct: 224 MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGF---- 279

Query: 289 SFLCIAVARGDSDLLKRV--------LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL 340
             L   + R D  LL  +        +       +   D    L +A   G      LLL
Sbjct: 280 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 339

Query: 341 EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 374
              + +                 G  +L  +  +
Sbjct: 340 SIPSVLALTK---ANNYYINETGGRLDLRAVALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 60.3 bits (146), Expect = 3e-10
 Identities = 25/154 (16%), Positives = 43/154 (27%), Gaps = 29/154 (18%)

Query: 185 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYD--------------------GR 224
                LA        +G+ Y    + R    L +                        G 
Sbjct: 220 DCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGF 279

Query: 225 SPLHLATSRGYED--------ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 276
             L     R  E         +++  I+            N  L  A++ G+ G  +LL+
Sbjct: 280 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 339

Query: 277 KEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNG 310
              + L +  A ++  I    G  DL    L + 
Sbjct: 340 SIPSVLALTKANNYY-INETGGRLDLRAVALEHH 372

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 53.4 bits (128), Expect = 5e-08
 Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 3/72 (4%)

Query: 210 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 269
           I+A A       D    L LA   G +     L+     + +               G  
Sbjct: 306 IKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA---NNYYINETGGRL 362

Query: 270 GVTSLLVKEGAS 281
            + ++ ++    
Sbjct: 363 DLRAVALEHHHH 374

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 84.7 bits (209), Expect = 1e-18
 Identities = 31/150 (20%), Positives = 60/150 (40%), Gaps = 5/150 (3%)

Query: 25  LYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYF 84
           L       + +Y  ++ KVS+ +         +   L    F  G+ I+ QG   D+ + 
Sbjct: 144 LMGSTLRKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFI 203

Query: 85  VCHGVLE-EVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQS 143
           +  G         E+     V +L P+  FGE+++L N P+  TV      + +++D+  
Sbjct: 204 ILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPKAATVVARGPLKCVKLDRPR 263

Query: 144 FTSILEIYFCDGRKVLTNLLEGKESNLRLK 173
           F  +L         +L   ++   S + L 
Sbjct: 264 FERVLGPC----SDILKRNIQQYNSFVSLS 289

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 72.4 bits (177), Expect = 2e-14
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 5/124 (4%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDG 99
           IEK  LF        + I   +    F+ GE +++QG+  D  Y +  G   E+ V  + 
Sbjct: 41  IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQG---EMDVYVNN 97

Query: 100 SEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVL 159
             E  + +    SFGE++++   P+  TV+     +L  ID+ S+  IL       RK+ 
Sbjct: 98  --EWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMY 155

Query: 160 TNLL 163
              L
Sbjct: 156 EEFL 159

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142

 Score = 81.2 bits (201), Expect = 1e-18
 Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 3/129 (2%)

Query: 39  YIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG---VLEEVGV 95
            +     F   + E +  I +   E+ F  G VI ++ +  D L  +  G   +    G 
Sbjct: 7   RLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGG 66

Query: 96  GEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDG 155
               +  TV  + P + FG  S++       + R  +  R++ I+      + E     G
Sbjct: 67  AGSAANSTVCSVVPGAIFGVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALG 126

Query: 156 RKVLTNLLE 164
           + ++ N+  
Sbjct: 127 QVLMNNVAA 135

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 83.8 bits (207), Expect = 3e-18
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 1/114 (0%)

Query: 36  YMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGV 95
           YM +++ V  F+    E ++++   L E  +  GE I+ QG   D  + +  G +     
Sbjct: 155 YMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTRE 214

Query: 96  GEDGSEET-VSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSIL 148
                +   +  L     FGE ++     +   V   E    L ID+ SF  ++
Sbjct: 215 DSPNEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLI 268

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 77.3 bits (190), Expect = 4e-16
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 5/125 (4%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDG 99
           I      K      I +IV  ++   +     I+++G+V   +Y +  G   +V V ++G
Sbjct: 41  ILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDG---KVEVTKEG 97

Query: 100 SEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVL 159
               +  + P   FGE++IL N  +  TV+     +L  ID+Q F +I+           
Sbjct: 98  --VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEY 155

Query: 160 TNLLE 164
              L+
Sbjct: 156 MEFLK 160

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154

 Score = 79.3 bits (196), Expect = 7e-18
 Identities = 26/155 (16%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDG 99
           ++   LF+  S   + +++          G  +  QG      Y++  G ++   +  +G
Sbjct: 14  LQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEG 73

Query: 100 SEETVSQLQPNSSFGEVSILCNIPQ-PYTVRICELSRLLRIDKQSFTSILEIYFCDGRKV 158
            E+ +      ++F E  +  + P    T +    S+L R   +++   L+        +
Sbjct: 74  QEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALAL 133

Query: 159 LTNLLEGKESNLRLKQVESDITFHIGKHEAELALR 193
           L  L        RL Q   +I          L+L+
Sbjct: 134 LAKLST------RLHQRIDEI--------ETLSLK 154

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 82.8 bits (204), Expect = 1e-17
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 1/117 (0%)

Query: 33  QTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEE 92
           + +Y  ++ KVS+ +         +   L    F  GE I+ QG   D  Y +  G    
Sbjct: 243 RKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASV 302

Query: 93  VGVGEDGSEE-TVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSIL 148
           +       E   V +L P+  FGE+++L N P+  TV      + +++D+  F  +L
Sbjct: 303 LQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVL 359

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 72.8 bits (178), Expect = 2e-14
 Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 5/125 (4%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDG 99
           I K  LF        + I   +     + GE +++QGN  D  Y V  G   EV V  +G
Sbjct: 132 ISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQG---EVDVYVNG 188

Query: 100 SEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVL 159
             E V+ +    SFGE++++   P+  TV+     +L  ID+ S+  IL       RK+ 
Sbjct: 189 --EWVTNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMY 246

Query: 160 TNLLE 164
              L 
Sbjct: 247 EEFLS 251

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134

 Score = 76.3 bits (188), Expect = 4e-17
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 7/112 (6%)

Query: 39  YIEKVSLFKGCSSEFINQIVIRLHEE-FFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGE 97
           ++ ++  F   +     ++   +  E     G +I+E G  +D  Y + +G    V +  
Sbjct: 17  FMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNG---TVEISH 73

Query: 98  DGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICE-LSRLLRIDKQSFTSIL 148
                 V  L   +SFG    L        VR      + + I +Q +  IL
Sbjct: 74  PD--GKVENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRIL 123

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 76.6 bits (188), Expect = 5e-16
 Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 11/133 (8%)

Query: 262 EAIKCGHDGVTSLLVKEGASLNV--------DDAGSFLCIAVARGDSDLLKRV---LSNG 310
           EA+K            +G  L          +   + L +AV   D   L  V   + N 
Sbjct: 136 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS 195

Query: 311 VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 370
            + + +     T LH           KLLL   AS+   +  G TPLD  +   +++  +
Sbjct: 196 GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEE 255

Query: 371 LLEDAKCTQLSEF 383
           LL  A   + +  
Sbjct: 256 LLTQALSGRFNSH 268

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 70.8 bits (173), Expect = 5e-14
 Identities = 30/194 (15%), Positives = 52/194 (26%), Gaps = 40/194 (20%)

Query: 164 EGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDY-- 221
             ++  +  K +E           A        A    D++ L      G DL +     
Sbjct: 104 IARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLA 163

Query: 222 ----DGRSPLHLATSRG---YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSL 274
                  + LHLA          I  FL+Q   +++ +   G+T L       +     L
Sbjct: 164 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKL 223

Query: 275 LVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYL 334
           L++                                       +    TPL +A       
Sbjct: 224 LLR-------------------------------GKASIEIANESGETPLDIAKRLKHEH 252

Query: 335 MAKLLLEAGASVFT 348
             +LL +A +  F 
Sbjct: 253 CEELLTQALSGRFN 266

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227

 Score = 75.0 bits (185), Expect = 9e-16
 Identities = 28/142 (19%), Positives = 59/142 (41%), Gaps = 6/142 (4%)

Query: 39  YIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGED 98
            + +  +F+G     I  +  +L    F  G  +  +G   D+LY +  G ++      D
Sbjct: 7   ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 66

Query: 99  GSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKV 158
           G E  ++ + P+  FGE+SI    P+  +       R + +D+ +  S +        ++
Sbjct: 67  GRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQL 126

Query: 159 LTNLLEGKESNLRLKQVESDIT 180
           L  L        RL++  +++ 
Sbjct: 127 LRVLAR------RLRRTNNNLA 142

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 25/115 (21%), Positives = 52/115 (45%)

Query: 37  MPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVG 96
           +  +++  LF+    + + + +  + E  F P E+++EQ    + L+ V  GV+    V 
Sbjct: 5   LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVS 64

Query: 97  EDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIY 151
             G E  +  +      GE ++L +  +  +VR     R L + ++ F  IL  +
Sbjct: 65  LGGRERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLMLHREHFELILRRH 119

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score = 76.5 bits (187), Expect = 2e-15
 Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 10/177 (5%)

Query: 1   MRPGPAVARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIR 60
           ++    +    G    +R +L             +    +  +      S+    ++   
Sbjct: 300 LQDTMLLLSQMGPDAHMRMILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGV 359

Query: 61  LHEEFFLP-GEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSIL 119
           L  E     G V+  QG      Y +  G    V V     +  V  L     FG+++++
Sbjct: 360 LIFESHAKGGTVLFNQGEEGTSWYIILKG---SVNV-VIYGKGVVCTLHEGDDFGKLALV 415

Query: 120 CNIPQPYTVR-ICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEGKESNLRLKQV 175
            + P+  ++    +    LR+DK+ F  IL     D       L E  +  L L++V
Sbjct: 416 NDAPRAASIVLREDNCHFLRVDKEDFNRILR----DVEANTVRLKEHDQDVLVLEKV 468

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score = 69.2 bits (168), Expect = 6e-13
 Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 5/149 (3%)

Query: 6   AVARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEF 65
           A A       E    L  R          +    ++ V  F+      + QI +  + E 
Sbjct: 10  AHAAHSQSSAEWIACLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYEN 69

Query: 66  FLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEE---TVSQLQPNSSFGEVSILCNI 122
              G  +  QG++    Y V  G L +V V E  S +   T+  L   ++FGE SIL N 
Sbjct: 70  LEKGITLFRQGDIGTNWYAVLAGSL-DVKVSETSSHQDAVTICTLGIGTAFGE-SILDNT 127

Query: 123 PQPYTVRICELSRLLRIDKQSFTSILEIY 151
           P+  T+   E S LLRI+++ F ++ E Y
Sbjct: 128 PRHATIVTRESSELLRIEQEDFKALWEKY 156

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333

 Score = 75.5 bits (185), Expect = 3e-15
 Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 1/119 (0%)

Query: 36  YMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGV 95
            +  +  + +F+GC +E +  +   +       G+V++ QG        +  G  E   V
Sbjct: 11  RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHV 70

Query: 96  GEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCD 154
           G+DG    +++  P    GE+++L + P+  TV   E        + +F +++ I    
Sbjct: 71  GDDG-VAIIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMVHIPGVG 128

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216

 Score = 72.6 bits (179), Expect = 5e-15
 Identities = 28/141 (19%), Positives = 59/141 (41%), Gaps = 6/141 (4%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDG 99
           ++   LF G + E ++  +       +  G+ I  QG++   LY V  G +        G
Sbjct: 1   MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGG 60

Query: 100 SEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVL 159
            E T++ L P   FGE+S+L    +  +    E + LL + ++ + +++         + 
Sbjct: 61  QERTLALLGPGELFGEMSLLDEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLA 120

Query: 160 TNLLEGKESNLRLKQVESDIT 180
             L        RL++ + ++ 
Sbjct: 121 ALLAR------RLREADLELD 135

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 73.9 bits (181), Expect = 7e-15
 Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 260 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRV---LSNGVDPNSR 316
           +LEA   G D    L   +  +         L +AV   +   L  V   + NG   +++
Sbjct: 167 VLEAFANGQDFGQPLPGPDAQA----PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK 222

Query: 317 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 376
             D  T LH AA        KLLL+  A V T +  G T LD  R   +K   +LLE A+
Sbjct: 223 AADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ 282

Query: 377 CTQLSEF 383
               +  
Sbjct: 283 AGTFAFP 289

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 72.3 bits (177), Expect = 2e-14
 Identities = 31/162 (19%), Positives = 46/162 (28%), Gaps = 40/162 (24%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDY------DGRSPLHLATSRGYED---ITLFLIQKGV 247
           A  + DL  +      G D  +              LHLA     +    +  F+IQ G 
Sbjct: 158 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG 217

Query: 248 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 307
            ++ K   GNT L  A          LL+K  A                           
Sbjct: 218 HLDAKAADGNTALHYAALYNQPDCLKLLLKGRA--------------------------- 250

Query: 308 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 349
                  + +    T L +A  +      +LL +A A  F  
Sbjct: 251 ----LVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF 288

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 69.2 bits (169), Expect = 2e-13
 Identities = 29/140 (20%), Positives = 46/140 (32%), Gaps = 6/140 (4%)

Query: 138 RIDKQSFTSILEIYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSA 197
           R   +       I   D   VL     G++    L   ++     +  H A         
Sbjct: 147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAV------KV 200

Query: 198 AYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGN 257
           A    L  +  +I+ G  L+    DG + LH A      D    L++    +   ++ G 
Sbjct: 201 ANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE 260

Query: 258 TPLLEAIKCGHDGVTSLLVK 277
           T L  A K  H     LL +
Sbjct: 261 TALDIARKKHHKECEELLEQ 280

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 24/141 (17%), Positives = 47/141 (33%), Gaps = 6/141 (4%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDG 99
                L +    + ++ ++ +     +  GE +  Q      ++ V  G ++   +   G
Sbjct: 13  ARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTG 72

Query: 100 SEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVL 159
           SE  VS      SFGE   L N P P +        ++ I    F S++         +L
Sbjct: 73  SEAVVSVFTRGESFGEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISIL 132

Query: 160 TNLLEGKESNLRLKQVESDIT 180
                       L  + + + 
Sbjct: 133 ATTFG------HLHSLVAQLE 147

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 7/142 (4%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDG 99
           ++   LF+  S   + +++          G  +  QG      Y++  G ++   +  +G
Sbjct: 11  LQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEG 70

Query: 100 SEETVSQLQPNSSFGEVSILCNIPQ-PYTVRICELSRLLRIDKQSFTSILEIYFCDGRKV 158
            E+ +      ++F E  +  + P    T +    S+L R   +++   L+        +
Sbjct: 71  QEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALAL 130

Query: 159 LTNLLEGKESNLRLKQVESDIT 180
           L  L        RL Q   +I 
Sbjct: 131 LAKLST------RLHQRIDEIE 146

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260

 Score = 71.3 bits (175), Expect = 3e-14
 Identities = 23/145 (15%), Positives = 51/145 (35%), Gaps = 7/145 (4%)

Query: 37  MPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVG 96
           M  I  + L K  +   +   +   H   +     ++ QG   + LY++  G +  +   
Sbjct: 45  MADIGSMVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKD 104

Query: 97  EDGSEETVSQLQPNSSFGEVSILCN-IPQPYTVRICELSRLLRIDKQSFTSILEIYFCDG 155
           E+G E  +S L      GE+ +      +   VR      +  I  + F  ++++     
Sbjct: 105 EEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDIL 164

Query: 156 RKVLTNLLEGKESNLRLKQVESDIT 180
            ++   +        RL+     + 
Sbjct: 165 MRLSAQMAR------RLQVTSEKVG 183

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 7/132 (5%)

Query: 36  YMPYIEKVSLFKGCSSEFINQIV--IRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEV 93
               + ++ LF+G   E    I+  ++LH      GE I++ GN   QL F+  G +  V
Sbjct: 16  MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIV 75

Query: 94  GVGEDGSEETVSQLQPNSSFGEVSILCNIPQ-PYTVRICELSRLLRIDKQSFTSILEIYF 152
              ++     + Q++        S+         +         + I K    S L  Y 
Sbjct: 76  TNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRY- 134

Query: 153 CDGRKVLTNLLE 164
                   N + 
Sbjct: 135 ---DIFRLNYMN 143

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213

 Score = 69.6 bits (171), Expect = 6e-14
 Identities = 27/141 (19%), Positives = 57/141 (40%), Gaps = 7/141 (4%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDG 99
           +    +        + +++       F  GE++  Q + I+ +  +  G L+   V E+G
Sbjct: 1   MGSDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENG 60

Query: 100 SEETVSQLQPNSSFGEVSILCNIPQ-PYTVRICELSRLLRIDKQSFTSILEIYFCDGRKV 158
               + +++P        I  + P+ P  V   E S++L I K+ F  +L       R++
Sbjct: 61  KTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKD----REL 116

Query: 159 LTNLLEGKESNLRLKQVESDI 179
           L   L  K+ +   + V   +
Sbjct: 117 LLFFL--KDVSEHFRVVSEKL 135

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210

 Score = 68.4 bits (168), Expect = 1e-13
 Identities = 21/138 (15%), Positives = 49/138 (35%), Gaps = 7/138 (5%)

Query: 43  VSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEE 102
           + L K  +   +   +   H   +     ++ QG   + LY++  G +  +   E+G E 
Sbjct: 1   MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEM 60

Query: 103 TVSQLQPNSSFGEVSILCN-IPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTN 161
            +S L      GE+ +      +   VR      +  I  + F  ++++      ++   
Sbjct: 61  ILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQ 120

Query: 162 LLEGKESNLRLKQVESDI 179
           +        RL+     +
Sbjct: 121 MAR------RLQVTSEKV 132

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 69.5 bits (170), Expect = 4e-13
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 9/111 (8%)

Query: 196 SAAYHGDLYQLKGLIRAGADLNKT------DYDGRSPLHLA---TSRGYEDITLFLIQKG 246
           +A  + DL  +      G D  +              LHLA    ++    +  F+IQ G
Sbjct: 138 TAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG 197

Query: 247 VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVAR 297
             ++ K   GNT L  A          LL+K  A +   +      + +AR
Sbjct: 198 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 59.1 bits (143), Expect = 9e-10
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 6/128 (4%)

Query: 150 IYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGL 209
           I   D   VL     G++    L   ++     +  H   LA++    A    L  +  +
Sbjct: 140 ICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLH---LAVK---VANQASLPLVDFI 193

Query: 210 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 269
           I+ G  L+    DG + LH A      D    L++    +   ++ G T L  A K  H 
Sbjct: 194 IQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHK 253

Query: 270 GVTSLLVK 277
               LL +
Sbjct: 254 ECEELLEQ 261

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 68.7 bits (167), Expect = 6e-13
 Identities = 32/130 (24%), Positives = 48/130 (36%), Gaps = 4/130 (3%)

Query: 260 LLEAIKCGHDGVTSLLVKEGASLNV----DDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 315
              +         +  +  GA +N      D  + L  A A       + +L NG + N 
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263

Query: 316 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 375
            D   R PLH A   G   +A L L+ GA +  +D  G  PL       N +++ LL  A
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA 323

Query: 376 KCTQLSEFHY 385
           K  +      
Sbjct: 324 KMREAEAAQG 333

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 67.5 bits (164), Expect = 2e-12
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 2/126 (1%)

Query: 174 QVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKT--DYDGRSPLHLAT 231
           + + +            AL F ++ +   L  +   +  GAD+N      D  +PL  AT
Sbjct: 184 RSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQAT 243

Query: 232 SRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFL 291
           +        FL+Q G ++N  D  G  PL  A   GH G+  L +K GA L   D+    
Sbjct: 244 AANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRD 303

Query: 292 CIAVAR 297
            + +A 
Sbjct: 304 PLTIAM 309

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 67.1 bits (163), Expect = 2e-12
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 2/110 (1%)

Query: 167 ESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSP 226
            +        +D+ +  G  +    L    A     L   + L++ GA++N+ D  GR P
Sbjct: 214 PTMADALAHGADVNWVNGGQDNATPL--IQATAANSLLACEFLLQNGANVNQADSAGRGP 271

Query: 227 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 276
           LH AT  G+  +    +++G D+  +D  G  PL  A++  +  + +LL 
Sbjct: 272 LHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 21/178 (11%), Positives = 48/178 (26%), Gaps = 19/178 (10%)

Query: 39  YIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGED 98
           +   +        E +           F  G  ++  G  I  + F+  G ++   + ED
Sbjct: 10  FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFED 69

Query: 99  GSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKV 158
           GSE+ +     NS  G++               E +R     ++S  ++         ++
Sbjct: 70  GSEKLLYYAGGNSLIGKLYPT---GNNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEI 126

Query: 159 LTNLLEGKESNLRLKQVESDITFHIGKHEAE---------LALRFNSAAYHGDLYQLK 207
             N L       ++      +   +  +            L               + 
Sbjct: 127 FKNYLT------KVAYYARQVA-EMNTYNPTIRILRLFYELCSSQGKRVGDTYEITMP 177

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232

 Score = 63.8 bits (156), Expect = 6e-12
 Identities = 15/107 (14%), Positives = 40/107 (37%)

Query: 43  VSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEE 102
             ++   + E    +   +          +  +G++ + L+++  G ++ +  G  G   
Sbjct: 15  RDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFH 74

Query: 103 TVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
               ++P   FG            T    E S++L I  ++  ++L+
Sbjct: 75  ISRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLK 121

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 2/115 (1%)

Query: 37  MPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVG 96
           M +     L+   ++     I   L  +    G +I         L  V  G L    + 
Sbjct: 2   MSFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILS 61

Query: 97  EDGSEETVSQLQPNSS--FGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
           ++G E T+ +L            I+ +I    T+   + + L  I  + +  I++
Sbjct: 62  DEGREITLYRLFDMDMCLLSASCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMK 116

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230

 Score = 60.8 bits (148), Expect = 6e-11
 Identities = 14/112 (12%), Positives = 35/112 (31%), Gaps = 1/112 (0%)

Query: 39  YIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGED 98
            +   +      +  I + +   H   +     +   G+    LY+V  G +  +   +D
Sbjct: 12  TVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDD 71

Query: 99  GSEETVSQLQPNSSFGEVSILC-NIPQPYTVRICELSRLLRIDKQSFTSILE 149
             E  +         GE+ +   +  +   +R      L  I  +    + +
Sbjct: 72  DRELVLGYFGSGEFVGEMGLFIESDTREVILRTRTQCELAEISYERLQQLFQ 123

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 13/139 (9%)

Query: 44  SLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEET 103
           ++F+  ++     +V           + I   G+  +++YF+  G ++   V E G E T
Sbjct: 31  NVFRQMATGAFPPVVETFE-----RNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEIT 85

Query: 104 VSQLQPNSSFGEVSILCNIPQPY--TVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTN 161
           V+ L+ NS FG +S+L                  LL    +     L+        +L  
Sbjct: 86  VALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRG 145

Query: 162 LLEGKESNLRLKQVESDIT 180
           L        R+ Q E  I 
Sbjct: 146 LSS------RILQTEMMIE 158

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220

 Score = 58.0 bits (141), Expect = 5e-10
 Identities = 20/142 (14%), Positives = 54/142 (38%), Gaps = 14/142 (9%)

Query: 39  YIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGED 98
            +   +L +  +SE  + ++    E+ +    ++       + ++ V  G +  V +  +
Sbjct: 5   RLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRV-RVYLAYE 63

Query: 99  GSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKV 158
             E T++ L+    F   +          ++  E + +L  D ++F +I+  +      +
Sbjct: 64  DKEFTLAILEAGDIFCTHT-------RAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNM 116

Query: 159 LTNLLEGKESNLRLKQVESDIT 180
           +  L +       LK   + I 
Sbjct: 117 VKVLGD------LLKNSLTIIN 132

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Length = 194

 Score = 57.1 bits (138), Expect = 9e-10
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 32  SQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLE 91
           S  ++   I  +  F   + E    +      +     E +++ G +    YFV  G L 
Sbjct: 1   SNAMHTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLR 60

Query: 92  EVGVGEDGSEETVSQLQPNSSFGEV-SILCNIPQPYTVRICELSRLLRIDKQSFTSILEI 150
              + E G E+T      N    +  +     P  + ++  E   LL I      ++ E 
Sbjct: 61  LFFIDEKGIEQTTQFAIENWWLSDYMAFQKQQPADFYIQSVENCELLSITYTEQENLFER 120

Query: 151 Y--FCD-GRKVLTNLLEGKESNLRLKQVES 177
                   R V        +   + + + S
Sbjct: 121 IPALERYFRLVYQKSFAAAQLRSKFQHMYS 150

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 7/124 (5%)

Query: 26  YPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFV 85
             VR+         +  V LF+      + +IV  L       G VI   G   D+++FV
Sbjct: 216 QEVRRGDFVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFV 275

Query: 86  CHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFT 145
             G +               +L P + FGE++++   P+  TV       LL +    F 
Sbjct: 276 VEGSVSVATPNP-------VELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQ 328

Query: 146 SILE 149
            +  
Sbjct: 329 MLCS 332

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207

 Score = 54.9 bits (133), Expect = 5e-09
 Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 4/104 (3%)

Query: 50  SSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQP 109
             + +++++   H   +     I+  G+  + L+F+  G +  +   +DG E  +  L  
Sbjct: 2   KLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNS 61

Query: 110 NSSFGEVSILCNI----PQPYTVRICELSRLLRIDKQSFTSILE 149
              FGE+ +         +   VR      +  I    F  + +
Sbjct: 62  GDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQ 105

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 17/115 (14%), Positives = 35/115 (30%), Gaps = 10/115 (8%)

Query: 37  MPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVG 96
           MP   + ++     S            +    G ++       + ++ V  G L  V + 
Sbjct: 1   MP--PRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRL-RVYLV 57

Query: 97  EDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIY 151
            +  E ++  L     F   S          V   E + +   D ++F   L+  
Sbjct: 58  GEEREISLFYLTSGDMFCMHS-------GCLVEATERTEVRFADIRTFEQKLQTC 105

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Length = 238

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 2/91 (2%)

Query: 61  LHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILC 120
           +  + F   E+I  Q +  +   F+  G+ +   + E+G+   +   +         I  
Sbjct: 18  IKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDT 77

Query: 121 NIPQPY--TVRICELSRLLRIDKQSFTSILE 149
                Y     I E +    I       +L 
Sbjct: 78  ETSVGYYNLEVISEQATAYVIKINELKELLS 108

>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Length = 202

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 60  RLHEEFFLPGEVIMEQGN--VIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVS 117
                 F  G+VI+  G     D+ Y V  G++    V E+G+  T+  ++P   FGE +
Sbjct: 4   VRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGEEA 63

Query: 118 ILCNIPQPYTVRICELSRLLRIDKQSFTSIL 148
           +     + Y        RL  + +     +L
Sbjct: 64  LFGQ-ERIYFAEAATDVRLEPLPENPDPELL 93

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 56/402 (13%), Positives = 111/402 (27%), Gaps = 111/402 (27%)

Query: 26  YPVRKISQTLYMPYIEKVSLFKGCS--SEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLY 83
           Y  + I       +++       C    +    I+ +  EE     + I+   + +    
Sbjct: 16  YQYKDILSVFEDAFVDNFD----CKDVQDMPKSILSK--EEI----DHIIMSKDAVSGTL 65

Query: 84  FVCHGVLEEVGVGEDGSEETV-SQLQPNSSF--GEVSILCNIPQPYTVR-ICELSRLLRI 139
            +    L      E+  ++ V   L+ N  F    +      P   T   I +  RL   
Sbjct: 66  RL-FWTLLS--KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN- 121

Query: 140 DKQSFTS--------ILEIYFCDGRKVLTNLLEGKESNLRLKQVESDITFH----IGKH- 186
           D Q F           L++     R+ L  L           +   ++        GK  
Sbjct: 122 DNQVFAKYNVSRLQPYLKL-----RQALLEL-----------RPAKNVLIDGVLGSGKTW 165

Query: 187 -------EAELALRFNSAAY----------HGDLYQLKGLIRAGADLNKTDY-DGRSPLH 228
                    ++  + +   +             L  L+ L+    D N T   D  S + 
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIK 224

Query: 229 LATSRGYEDITLFLIQKG-------VDINIKDKFGNTPLLEA--IKC------GHDGVT- 272
           L       ++   L  K        +  N+++         A  + C          VT 
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLL-NVQNA----KAWNAFNLSCKILLTTRFKQVTD 279

Query: 273 SLLVKEGASLNVDDAGSFLCIAVARGDS-DLLKRVLSNGVDPNSRDYDHRTPLHVAASEG 331
            L       +++D     L       +   LL + L        R+     P  ++    
Sbjct: 280 FLSAATTTHISLDHHSMTL----TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---- 331

Query: 332 LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
             ++A+ + +          W N      +      L  ++E
Sbjct: 332 --IIAESIRDG------LATWDNW-----KHVNCDKLTTIIE 360

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 80/549 (14%), Positives = 140/549 (25%), Gaps = 201/549 (36%)

Query: 13  RKEEVRYLLWIRL------------------YP--VRKISQTLYMP------YIEKVSLF 46
                  L W  L                  Y   +  I      P      YIE+    
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 47  KGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQL----YFVCHG-------VL----- 90
              +  F    V RL           ++    + +L      +  G        +     
Sbjct: 120 YNDNQVFAKYNVSRLQP--------YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 91  --EEV-----------GVGEDGSEETV--------SQLQPNSSFGEVSILCNIPQPYTVR 129
              +V            +    S ETV         Q+ PN +        NI       
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT-SRSDHSSNIKLRIHSI 230

Query: 130 ICELSRLLRIDKQSFTSIL--------EI--YF---CDGRKVL--TNLLEGKESNLRLKQ 174
             EL RLL+  K     +L        +    F   C   K+L  T          R KQ
Sbjct: 231 QAELRRLLK-SKPYENCLLVLLNVQNAKAWNAFNLSC---KILLTT----------RFKQ 276

Query: 175 VESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTD----YDGRSPLHLA 230
           V     F        ++L  +S     D  ++K L+    D    D        +P  L+
Sbjct: 277 V---TDFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 231 ---------------------------------------TSRGYEDITLFLIQKGVDINI 251
                                                    + ++ +++F       I  
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF--PPSAHIPT 389

Query: 252 K-------DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAV-ARGDSDLL 303
                   D   +  ++   K  H    SL+ K+     +     +L + V    +  L 
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKL-HK--YSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 304 KRVLSNGVDPNSRDYDHRTPL------------HVAASE---------GLYL----MAKL 338
           + ++ +   P + D D   P             H+   E          ++L    + + 
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506

Query: 339 LLEAGASVFTKDRWGNTPLD----EGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIA 394
           +     +        NT       +  +C N    + L +A    + +F      +  I 
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA----ILDF------LPKIE 556

Query: 395 ENLLLLPLC 403
           ENL+     
Sbjct: 557 ENLICSKYT 565

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 60/342 (17%), Positives = 98/342 (28%), Gaps = 106/342 (30%)

Query: 41  EKVSLFKGCSSEFINQIVIRLHEEFFL--P------GEVIMEQGNVIDQLYFVCHGVLEE 92
           E  SL      ++++     L  E     P       E I +     D    V    L  
Sbjct: 302 EVKSLL----LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 93  VGVGEDGSEETVSQLQPN---SSFGEVSIL---CNIPQPYTVRICELSRLLRIDKQSFTS 146
           +       E +++ L+P      F  +S+     +IP                     T 
Sbjct: 358 I------IESSLNVLEPAEYRKMFDRLSVFPPSAHIP---------------------TI 390

Query: 147 ILEIYFCDGRK----VLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGD 202
           +L + + D  K    V+ N L     +L  KQ +   T  I      L L+        +
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKY--SLVEKQPKES-TISI--PSIYLELKVKLE----N 441

Query: 203 LYQL-KGLIRAGADLNKTDYDGRSPL------------HLATSRGYEDITLFLIQKGVDI 249
            Y L + ++         D D   P             HL      E +TLF        
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-------- 493

Query: 250 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV------------DDAGSFLCIAVAR 297
             +  F +   LE  K  HD   +     G+ LN             D+   +      R
Sbjct: 494 --RMVFLDFRFLEQ-KIRHDS--TAWNASGSILNTLQQLKFYKPYICDNDPKY-----ER 543

Query: 298 GDSDLLKRVLSNGVDPNSRDYDHRTPLHVA---ASEGLYLMA 336
             + +L  +       N     +   L +A     E ++  A
Sbjct: 544 LVNAILDFLPKIE--ENLICSKYTDLLRIALMAEDEAIFEEA 583

>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999

 Score = 51.8 bits (123), Expect = 3e-07
 Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 6/150 (4%)

Query: 39  YIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGED 98
            ++ V  F+      + QI +  + E    G  +  QG++    Y V  G L+       
Sbjct: 43  RLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102

Query: 99  GSEE--TVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSIL---EIYFC 153
             ++  T+  L   ++FGE SIL N P+  T+   E S LLRI+++ F ++      Y  
Sbjct: 103 SHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMA 161

Query: 154 DGRKVLTNLLEGKESNLRLKQVESDITFHI 183
                   ++E   +N R+   E+  +  I
Sbjct: 162 GLLAPPYGVMETGSNNDRIPDKENVPSEKI 191

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Length = 195

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 66  FLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQP 125
           F   E I  +G     LY +  G++  V +  DG   T+  + P   FGE + L      
Sbjct: 4   FARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGEEA-LEGKAYR 62

Query: 126 YTVRICELSRLLRIDKQSF 144
           YT      + +  ++ ++ 
Sbjct: 63  YTAEAMTEAVVQGLEPRAM 81

>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB: 3unw_A* 3ss3_A 3ss4_A 3ss5_A* Length = 534

 Score = 47.4 bits (112), Expect = 5e-06
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 291 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEG 331
           L     + +  L K  +   V P S +    T ++   S G
Sbjct: 486 LDYESLQQELAL-KETVWKKVSPESNEDISTTVVYRMESLG 525

>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB: 3unw_A* 3ss3_A 3ss4_A 3ss5_A* Length = 534

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 5/40 (12%), Positives = 13/40 (32%), Gaps = 1/40 (2%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYE 236
            +   +L  LK  +         +    + ++   S G +
Sbjct: 489 ESLQQEL-ALKETVWKKVSPESNEDISTTVVYRMESLGEK 527

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	403
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.98
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.85
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	99.84
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	99.83
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	99.83
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.82
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	99.8
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	99.8
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	99.8
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	99.79
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	99.79
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	99.77
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	99.76
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.75
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	99.75
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	99.75
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	99.74
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	99.74
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	99.74
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	99.73
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	99.73
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	99.73
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	99.72
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	99.72
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	99.71
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.71
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	99.7
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	99.7
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	99.69
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	99.69
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	99.67
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	99.66
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	99.66
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.65
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	99.65
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.65
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	99.64
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	99.64
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	99.61
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	99.61
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	99.61
1ft9_A	222	Carbon monoxide oxidation system transcription reg	99.6
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.59
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	99.57
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	99.57
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	99.56
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.54
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	99.54
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.48
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	99.47
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	99.47
3b02_A	195	Transcriptional regulator, CRP family; structural	99.43
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.38
2zcw_A	202	TTHA1359, transcriptional regulator, FNR/CRP famil	99.34
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	99.22

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=8.9e-39  Score=289.48  Aligned_cols=210  Identities=24%  Similarity=0.245  Sum_probs=186.1

Q ss_pred             CcchhhHhhhHHHhhccCCHHHHHHHHHcCCC---ccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHH
Q 015680          184 GKHEAELALRFNSAAYHGDLYQLKGLIRAGAD---LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL  260 (403)
Q Consensus       184 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l  260 (403)
                      +..+..|.||||+|+..|+.+++++|++.|++   ++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL   82 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            34567889999999999999999999999988   788899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHcCCC-----------------------------------------------ccc--cCCCchH
Q 015680          261 LEAIKCGHDGVTSLLVKEGAS-----------------------------------------------LNV--DDAGSFL  291 (403)
Q Consensus       261 ~~A~~~~~~~~v~~L~~~~~~-----------------------------------------------~~~--~~~~~~l  291 (403)
                      |+|+..|+.+++++|++++++                                               ++.  ..|.|||
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  162 (282)
T 1oy3_D           83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (282)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence            999999999999999998765                                               222  2477999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCC-CChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHH
Q 015680          292 CIAVARGDSDLLKRVLSNGVDPNSRDYD-HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK  370 (403)
Q Consensus       292 ~~a~~~~~~~~v~~Ll~~~~~~~~~~~~-g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~  370 (403)
                      |+|+..|+.+++++|+++|++++..+.. |+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.++++
T Consensus       163 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~  242 (282)
T 1oy3_D          163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR  242 (282)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHH
Confidence            9999999999999999999999999854 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccccccccccccccchhhhh
Q 015680          371 LLEDAKCTQLSEFHYCSQGMIGIA  394 (403)
Q Consensus       371 ~Ll~~~~~~~~~~~~~~~~~~~~~  394 (403)
                      +|+++|++..... ..+.+++.++
T Consensus       243 ~Ll~~ga~~~~~~-~~g~tpl~~a  265 (282)
T 1oy3_D          243 LLRAHGAPEPEDG-GDKLSPCSSS  265 (282)
T ss_dssp             HHHHTTCCCCCCC-----------
T ss_pred             HHHHcCCCcCcCC-Cccccccccc
Confidence            9999999866543 4445555554

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.3e-38  Score=284.16  Aligned_cols=194  Identities=28%  Similarity=0.336  Sum_probs=150.1

Q ss_pred             chhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCC-CCCcCCCCCCcHHHHHH
Q 015680          186 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAI  264 (403)
Q Consensus       186 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~g~t~l~~A~  264 (403)
                      .+..+.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|++.+. +++.++..|.||||+|+
T Consensus        53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  132 (253)
T 1yyh_A           53 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA  132 (253)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHH
Confidence            35567778888888888888888888888887777778888888888888888888887776 77777777888888888


Q ss_pred             HcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHc
Q 015680          265 KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA  342 (403)
Q Consensus       265 ~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~  342 (403)
                      ..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++
T Consensus       133 ~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  212 (253)
T 1yyh_A          133 RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH  212 (253)
T ss_dssp             HHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            8888888888888877777655  56788888888888888888888888888787888888888888888888888888


Q ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccc
Q 015680          343 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ  379 (403)
Q Consensus       343 g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  379 (403)
                      |++++.+|..|.||+|+|+.+|+.+|+++|.+....+
T Consensus       213 ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~~  249 (253)
T 1yyh_A          213 FANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHH  249 (253)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC-----
T ss_pred             CCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhhc
Confidence            8888888888888888888888888888877665543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=9.5e-38  Score=272.98  Aligned_cols=197  Identities=28%  Similarity=0.339  Sum_probs=188.1

Q ss_pred             chhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCC-CCCcCCCCCCcHHHHHH
Q 015680          186 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAI  264 (403)
Q Consensus       186 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~g~t~l~~A~  264 (403)
                      .+..+.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+
T Consensus        21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  100 (223)
T 2f8y_A           21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA  100 (223)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHH
T ss_pred             cCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHH
Confidence            36678999999999999999999999999999999999999999999999999999999987 89999999999999999


Q ss_pred             HcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHc
Q 015680          265 KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA  342 (403)
Q Consensus       265 ~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~  342 (403)
                      ..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++
T Consensus       101 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  180 (223)
T 2f8y_A          101 RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH  180 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence            9999999999999999998766  77999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcccccccc
Q 015680          343 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE  382 (403)
Q Consensus       343 g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~  382 (403)
                      |++++.+|..|.||+|+|+.+++.+++++|+++|+....+
T Consensus       181 ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~~  220 (223)
T 2f8y_A          181 FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQ  220 (223)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC-
T ss_pred             CCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcccc
Confidence            9999999999999999999999999999999999975543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.2e-37  Score=275.61  Aligned_cols=215  Identities=22%  Similarity=0.257  Sum_probs=192.2

Q ss_pred             cchhhHhhhHHHhhccCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHH
Q 015680          185 KHEAELALRFNSAAYHGDLYQLKGLIR----AGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL  260 (403)
Q Consensus       185 ~~~~~~~~~l~~a~~~~~~~~~~~ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l  260 (403)
                      ..+.+|.||||+|+..|+.+++++|++    .+.+++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.|||
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l   83 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA   83 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence            457788999999999999999999997    6899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHcCC----Ccccc--CCCchHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHcCcH
Q 015680          261 LEAIKCGHDGVTSLLVKEGA----SLNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRD-YDHRTPLHVAASEGLY  333 (403)
Q Consensus       261 ~~A~~~~~~~~v~~L~~~~~----~~~~~--~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~Lh~A~~~~~~  333 (403)
                      |+|+..|+.+++++|++++.    +++..  ++.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.
T Consensus        84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~  163 (241)
T 1k1a_A           84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL  163 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCH
Confidence            99999999999999999987    55554  47799999999999999999999999999998 7899999999999999


Q ss_pred             HHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccccccc--------cccchhhhhhhhcc
Q 015680          334 LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHY--------CSQGMIGIAENLLL  399 (403)
Q Consensus       334 ~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~--------~~~~~~~~~~~l~~  399 (403)
                      +++++|+++|++++.+|..|.||||+|+.+|+.+++++|+++|++.......        ...+..++++.|+.
T Consensus       164 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~  237 (241)
T 1k1a_A          164 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKAT  237 (241)
T ss_dssp             HHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC---
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhcc
Confidence            9999999999999999999999999999999999999999999986543322        44556677776654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3e-38  Score=277.72  Aligned_cols=194  Identities=27%  Similarity=0.385  Sum_probs=168.5

Q ss_pred             cchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHH
Q 015680          185 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  264 (403)
Q Consensus       185 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~  264 (403)
                      ..+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus        35 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  114 (231)
T 3aji_A           35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA  114 (231)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            34566788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHc
Q 015680          265 KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA  342 (403)
Q Consensus       265 ~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~  342 (403)
                      ..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus       115 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  194 (231)
T 3aji_A          115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ  194 (231)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence            8888888888888888887755  66888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcccc
Q 015680          343 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT  378 (403)
Q Consensus       343 g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  378 (403)
                      |++++.+|..|.||+|+|+..++.+++++|+++|++
T Consensus       195 ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          195 GASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             TCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            888888888888888888888888888888888764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.1e-37  Score=283.23  Aligned_cols=198  Identities=26%  Similarity=0.278  Sum_probs=188.6

Q ss_pred             CcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHH
Q 015680          184 GKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  263 (403)
Q Consensus       184 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A  263 (403)
                      ...+..+.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|
T Consensus        53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A  132 (285)
T 3d9h_A           53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNA  132 (285)
T ss_dssp             CSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHH
T ss_pred             cCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHcCCCccccC-CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHc
Q 015680          264 IKCGHDGVTSLLVKEGASLNVDD-AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA  342 (403)
Q Consensus       264 ~~~~~~~~v~~L~~~~~~~~~~~-~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~  342 (403)
                      +..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++
T Consensus       133 ~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  212 (285)
T 3d9h_A          133 CVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES  212 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC
Confidence            99999999999999999987544 78999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcccccccc
Q 015680          343 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE  382 (403)
Q Consensus       343 g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~  382 (403)
                      |++++. +..|.||||+|+.+++.+++++|+++|++.-..
T Consensus       213 ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~  251 (285)
T 3d9h_A          213 GADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAK  251 (285)
T ss_dssp             TCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            999984 889999999999999999999999999986544

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=8.3e-38  Score=279.00  Aligned_cols=215  Identities=26%  Similarity=0.281  Sum_probs=165.6

Q ss_pred             cchhhHhhhHHHhhccC-------------CHHHHHHHHHcCCCccc-cCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCC
Q 015680          185 KHEAELALRFNSAAYHG-------------DLYQLKGLIRAGADLNK-TDYDGRSPLHLATSRGYEDITLFLIQKGVDIN  250 (403)
Q Consensus       185 ~~~~~~~~~l~~a~~~~-------------~~~~~~~ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  250 (403)
                      ..+.+|.||||+|+..|             +.+++++|++.|++++. .+..|+||||+|+..|+.+++++|++.|++++
T Consensus         5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~   84 (253)
T 1yyh_A            5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN   84 (253)
T ss_dssp             -----------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            34678999999999987             99999999999999865 58999999999999999999999999999999


Q ss_pred             cCCCCCCcHHHHHHHcCChHHHHHHHHcCC-Ccccc--CCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q 015680          251 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGA-SLNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVA  327 (403)
Q Consensus       251 ~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~-~~~~~--~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A  327 (403)
                      .+|..|+||||+|+..|+.+++++|++++. +++..  +|.||||+|+..|+.+++++|++.|++++..|..|+||||+|
T Consensus        85 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A  164 (253)
T 1yyh_A           85 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA  164 (253)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            999999999999999999999999999986 66664  478999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccccccc--------cccchhhhhhhhcc
Q 015680          328 ASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHY--------CSQGMIGIAENLLL  399 (403)
Q Consensus       328 ~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~--------~~~~~~~~~~~l~~  399 (403)
                      +..|+.+++++|+++|++++.+|..|.||||+|+.+|+.+++++|+++|++.-.....        ...+..+++++|..
T Consensus       165 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~  244 (253)
T 1yyh_A          165 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDL  244 (253)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999986544322        44556666666654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.8e-37  Score=273.89  Aligned_cols=211  Identities=26%  Similarity=0.281  Sum_probs=194.4

Q ss_pred             cCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHH
Q 015680          183 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE  262 (403)
Q Consensus       183 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~  262 (403)
                      +...+..+.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   83 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHL   83 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHH
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Confidence            34556678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHcC-CCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHH
Q 015680          263 AIKCGHDGVTSLLVKEG-ASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL  339 (403)
Q Consensus       263 A~~~~~~~~v~~L~~~~-~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~L  339 (403)
                      |+..|+.+++++|++++ .+++..+  |.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|
T Consensus        84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  163 (237)
T 3b7b_A           84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL  163 (237)
T ss_dssp             HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            99999999999999998 6776654  77999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccccccccccchhhhh
Q 015680          340 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIA  394 (403)
Q Consensus       340 l~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  394 (403)
                      +++|++++.+|..|.||||+|+.+++.+++++|+++|++..... ..+.+++.++
T Consensus       164 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d-~~g~t~l~~A  217 (237)
T 3b7b_A          164 LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN-KEGETPLQCA  217 (237)
T ss_dssp             HTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC-TTSCCHHHHS
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccC-CCCCCHHHHH
Confidence            99999999999999999999999999999999999999865543 3445555443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.2e-37  Score=287.90  Aligned_cols=236  Identities=24%  Similarity=0.272  Sum_probs=203.0

Q ss_pred             hHHHHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCc
Q 015680          156 RKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGY  235 (403)
Q Consensus       156 ~~ll~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~  235 (403)
                      ...+..+...+..+....++.. ........+..+.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus        25 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  103 (351)
T 3utm_A           25 KDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGH  103 (351)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCT-TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCC
Confidence            3344444444444433333321 223344556778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCcccc------------------------------
Q 015680          236 EDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD------------------------------  285 (403)
Q Consensus       236 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~------------------------------  285 (403)
                      .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..                              
T Consensus       104 ~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~  183 (351)
T 3utm_A          104 YEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLL  183 (351)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHH
Confidence            99999999999999999999999999999999999999999999887642                              


Q ss_pred             --------------------------CCCchHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHH
Q 015680          286 --------------------------DAGSFLCIAVAR---GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMA  336 (403)
Q Consensus       286 --------------------------~~~~~l~~a~~~---~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~  336 (403)
                                                .+.||+|+|+..   ++.+++++|++.|++++.+|..|.||||+|+..|+.+++
T Consensus       184 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v  263 (351)
T 3utm_A          184 QAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVM  263 (351)
T ss_dssp             HHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHH
Confidence                                      356999999999   558999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccccccccccchhhh
Q 015680          337 KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGI  393 (403)
Q Consensus       337 ~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  393 (403)
                      ++|+++|++++.+|..|.||||+|+.+|+.+++++|+++|+++-... ..+.+++.+
T Consensus       264 ~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~-~~g~tal~~  319 (351)
T 3utm_A          264 EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIIS-LQGFTAAQM  319 (351)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHH
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcC-CCCCChhhh
Confidence            99999999999999999999999999999999999999999866554 334455444

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.2e-38  Score=281.11  Aligned_cols=231  Identities=24%  Similarity=0.309  Sum_probs=170.8

Q ss_pred             hHhHHHHHHHHhhcchHHHHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHH-HHHHHHHcCCCcccc
Q 015680          141 KQSFTSILEIYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLY-QLKGLIRAGADLNKT  219 (403)
Q Consensus       141 ~~~~~~l~~~~~~~~~~ll~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~-~~~~ll~~~~~~~~~  219 (403)
                      .+...+++.+.......+++.+++.+.....      +........+..+.+||+.|+..++.+ +++.|++.|+++|..
T Consensus         9 ~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~------~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~   82 (269)
T 4b93_B            9 YREVEKLLRAVADGDLEMVRYLLEWTEEDLE------DAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVT   82 (269)
T ss_dssp             CHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------------CCCCTTCC
T ss_pred             ccchhHHHHHHHcCCHHHHHHHHHCCCcccc------cccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCc
Confidence            3456677776666666777777765543211      111223445677889999999988764 789999999999999


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHc
Q 015680          220 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVAR  297 (403)
Q Consensus       220 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~  297 (403)
                      |..|+||||+|+..|+.+++++|++.|++++.++..|.||+|+|+..++.+++++|+++|++++..+  |.||||+|+..
T Consensus        83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~  162 (269)
T 4b93_B           83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSG  162 (269)
T ss_dssp             CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999999999999999999865  77999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCC-HHHHHHHHHcc
Q 015680          298 GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN-KNLIKLLEDAK  376 (403)
Q Consensus       298 ~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~-~~~v~~Ll~~~  376 (403)
                      |+.+++++|++.|++++.++..|+||||+|+..|+.++|++|+++|+|++.+|.+|.||||+|+.+++ .+++++|.+.+
T Consensus       163 g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~  242 (269)
T 4b93_B          163 GHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCV  242 (269)
T ss_dssp             TCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-----
T ss_pred             CCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999998886 35666666655


Q ss_pred             c
Q 015680          377 C  377 (403)
Q Consensus       377 ~  377 (403)
                      +
T Consensus       243 ~  243 (269)
T 4b93_B          243 A  243 (269)
T ss_dssp             -
T ss_pred             h
Confidence            5

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=9.7e-38  Score=283.44  Aligned_cols=214  Identities=21%  Similarity=0.116  Sum_probs=196.3

Q ss_pred             CcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHH
Q 015680          184 GKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  263 (403)
Q Consensus       184 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A  263 (403)
                      ...+..|.||||+|+..|+.+++++|++.|++++..+  |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A  102 (285)
T 3kea_A           25 FKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA  102 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Confidence            4557788999999999999999999999999998774  89999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHcCCCccccC--C-CchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHH
Q 015680          264 IKCGHDGVTSLLVKEGASLNVDD--A-GSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL  340 (403)
Q Consensus       264 ~~~~~~~~v~~L~~~~~~~~~~~--~-~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll  340 (403)
                      +..|+.+++++|+++|++++..+  | .||||+|+..|+.+++++|+++|++.... ..|.||||+|+..|+.+++++|+
T Consensus       103 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll  181 (285)
T 3kea_A          103 VDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLL  181 (285)
T ss_dssp             HHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHH
Confidence            99999999999999999999876  4 69999999999999999999999877332 28999999999999999999999


Q ss_pred             HcCCCcccCCCCCCCH-HHHHHHcCCHHHHHHHHHccccccccc-cccccchhhhhhhhccc
Q 015680          341 EAGASVFTKDRWGNTP-LDEGRMCGNKNLIKLLEDAKCTQLSEF-HYCSQGMIGIAENLLLL  400 (403)
Q Consensus       341 ~~g~d~~~~~~~g~t~-l~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~l~~~  400 (403)
                      ++|++++.+|..|.|| ||+|+.+|+.+++++|+++|++.-... .....+..++++.|+.-
T Consensus       182 ~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~a~~~~~~~iv~~Ll~~  243 (285)
T 3kea_A          182 DYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANLENVLLDDAEIAKMIIEK  243 (285)
T ss_dssp             HHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTGGGGTTTCHHHHHHHHHH
T ss_pred             HcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCChhhhhcCCHHHHHHHHHc
Confidence            9999999999999998 999999999999999999999866543 34667889999998753

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.5e-36  Score=273.39  Aligned_cols=214  Identities=26%  Similarity=0.268  Sum_probs=182.8

Q ss_pred             hhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHc
Q 015680          187 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  266 (403)
Q Consensus       187 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~  266 (403)
                      +..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  115 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY  115 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHh
Confidence            45577899999999999999999999999988888999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHcCCCcccc------------CCCchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCc-
Q 015680          267 GHDGVTSLLVKEGASLNVD------------DAGSFLCIAVARGDSDLLKRVLSN-GVDPNSRDYDHRTPLHVAASEGL-  332 (403)
Q Consensus       267 ~~~~~v~~L~~~~~~~~~~------------~~~~~l~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~Lh~A~~~~~-  332 (403)
                      |+.+++++|+++|++++..            .+.||||+|+..|+.+++++|++. |++++..|..|.||||+|+..++ 
T Consensus       116 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  195 (285)
T 1wdy_A          116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD  195 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT
T ss_pred             CCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc
Confidence            9999999999998888754            366899999999999999999987 89999999999999999999888 


Q ss_pred             ---HHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-ccccccccccc--------cccchhhhhhhhccc
Q 015680          333 ---YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED-AKCTQLSEFHY--------CSQGMIGIAENLLLL  400 (403)
Q Consensus       333 ---~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~--------~~~~~~~~~~~l~~~  400 (403)
                         .+++++|+++|++++.+|..|.||||+|+.+|+.+++++|++ +|++.-.....        ...+..+++++|+..
T Consensus       196 ~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~  275 (285)
T 1wdy_A          196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR  275 (285)
T ss_dssp             TTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHc
Confidence               889999999999999999999999999999999999999998 67654433211        344566777777653

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.3e-37  Score=275.28  Aligned_cols=223  Identities=20%  Similarity=0.211  Sum_probs=191.5

Q ss_pred             chHHHHHhhhccccchhhhhccc--ceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHH
Q 015680          155 GRKVLTNLLEGKESNLRLKQVES--DITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATS  232 (403)
Q Consensus       155 ~~~ll~~ll~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~  232 (403)
                      +...++.+...+..++...+++.  .........+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.
T Consensus         9 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~   88 (241)
T 1k1a_A            9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACE   88 (241)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            34444444444444333333220  1122334456778999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHhcCC----CCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC---CCchHHHHHHcCCHHHHHH
Q 015680          233 RGYEDITLFLIQKGV----DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---AGSFLCIAVARGDSDLLKR  305 (403)
Q Consensus       233 ~~~~~~~~~Ll~~~~----~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~---~~~~l~~a~~~~~~~~v~~  305 (403)
                      .|+.+++++|++.++    +++..+..|.||||+|+..|+.+++++|+++|++++..+   |.||||+|+..|+.+++++
T Consensus        89 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~  168 (241)
T 1k1a_A           89 HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL  168 (241)
T ss_dssp             TTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHH
Confidence            999999999999987    889999999999999999999999999999999998755   7899999999999999999


Q ss_pred             HHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccc
Q 015680          306 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC  377 (403)
Q Consensus       306 Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  377 (403)
                      |++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.++++.|.+.++
T Consensus       169 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          169 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             HHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999998765

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.7e-36  Score=260.66  Aligned_cols=188  Identities=26%  Similarity=0.339  Sum_probs=178.3

Q ss_pred             hHhhhHHHhhccCCHHHHHHHHHcCC-CccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcC
Q 015680          189 ELALRFNSAAYHGDLYQLKGLIRAGA-DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  267 (403)
Q Consensus       189 ~~~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~  267 (403)
                      .+.++||.|+..|+.+.++.++..+. +++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   83 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG   83 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            35689999999999999999999885 89999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHH-HcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCChHHHHHHHcCc-----HHHHHH
Q 015680          268 HDGVTSLLV-KEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNG-VDPNSRDYDHRTPLHVAASEGL-----YLMAKL  338 (403)
Q Consensus       268 ~~~~v~~L~-~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~Lh~A~~~~~-----~~~~~~  338 (403)
                      +.+++++|+ ..+.+++..+  +.||||+|+..|+.+++++|++.| ++++..|..|.||||+|+..++     .+++++
T Consensus        84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~  163 (201)
T 3hra_A           84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL  163 (201)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred             CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence            999999999 4566777655  679999999999999999999999 9999999999999999999987     999999


Q ss_pred             HHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcc
Q 015680          339 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK  376 (403)
Q Consensus       339 Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  376 (403)
                      |+++|++++.+|..|.||||+|+.+|+.+++++|+++|
T Consensus       164 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99999999999999999999999999999999999886

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.5e-36  Score=264.77  Aligned_cols=204  Identities=26%  Similarity=0.283  Sum_probs=184.2

Q ss_pred             HhhhHHHhhccCCHHHHHHHHHcCCCcc-ccCCCCCcHHHHHHHcCcHHHHHHHHhcC--CCCCc-CCCCCCcHHHHHHH
Q 015680          190 LALRFNSAAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKG--VDINI-KDKFGNTPLLEAIK  265 (403)
Q Consensus       190 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~--~~~~~-~~~~g~t~l~~A~~  265 (403)
                      |.||||.|+..|+.+++++|++.++++. ..+..|.||||+|+..|+.+++++|++.|  ++++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            4689999999999999999999998765 47899999999999999999999999999  55665 78899999999999


Q ss_pred             cCChHHHHHHHHcC--CCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHH
Q 015680          266 CGHDGVTSLLVKEG--ASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE  341 (403)
Q Consensus       266 ~~~~~~v~~L~~~~--~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~  341 (403)
                      .|+.+++++|+++|  ++++..+  |.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  161 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  161 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999998  7777654  7799999999999999999999999999999999999999999999999999999


Q ss_pred             cC-CCcccCCCCCCCHHHHHHHcCCHHHHHHHH-Hccccccccccccccchhhhh
Q 015680          342 AG-ASVFTKDRWGNTPLDEGRMCGNKNLIKLLE-DAKCTQLSEFHYCSQGMIGIA  394 (403)
Q Consensus       342 ~g-~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll-~~~~~~~~~~~~~~~~~~~~~  394 (403)
                      +| ++++.+|..|.||||+|+..|+.+++++|+ ++|++..... ..+.++++++
T Consensus       162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~-~~g~t~l~~A  215 (228)
T 2dzn_A          162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD-NKGAKAEDVA  215 (228)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBC-TTSCBGGGGC
T ss_pred             cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccC-CCCCcHHHHH
Confidence            99 999999999999999999999999999999 8899866543 3344555443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=7e-37  Score=287.71  Aligned_cols=221  Identities=19%  Similarity=0.128  Sum_probs=165.1

Q ss_pred             chHHHHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcC
Q 015680          155 GRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG  234 (403)
Q Consensus       155 ~~~ll~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~  234 (403)
                      +...++.+...+..++...+++...+  .+..+..+.||||+|+..|+.+++++|++.|++++.  ..|.||||+|+..|
T Consensus        20 g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~g   95 (364)
T 3ljn_A           20 NMEKIHVAARKGQTDEVRRLIETGVS--PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMAN   95 (364)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC--ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHcC
Confidence            45555666666665555555554332  334455566677777777777777777777664432  35667777777777


Q ss_pred             cHHHHHHHHhc----CCCCCc-----------------CCCCCCcHHHHHHHcC--ChHHHHHHHHcCCCccccC--CCc
Q 015680          235 YEDITLFLIQK----GVDINI-----------------KDKFGNTPLLEAIKCG--HDGVTSLLVKEGASLNVDD--AGS  289 (403)
Q Consensus       235 ~~~~~~~Ll~~----~~~~~~-----------------~~~~g~t~l~~A~~~~--~~~~v~~L~~~~~~~~~~~--~~~  289 (403)
                      +.+++++|++.    |++++.                 .|..|.||||+|+..|  +.+++++|+++|++++..+  |.|
T Consensus        96 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t  175 (364)
T 3ljn_A           96 KTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADET  175 (364)
T ss_dssp             CHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCC
T ss_pred             CHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCC
Confidence            77777777766    555555                 7777888888888888  8888888888888877765  568


Q ss_pred             hHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcC
Q 015680          290 FLCIAVARGDSDLLKRVLSNGVD-----PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG  364 (403)
Q Consensus       290 ~l~~a~~~~~~~~v~~Ll~~~~~-----~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~  364 (403)
                      |||+|+..|+.+++++|++.|++     ++..|..|+||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+..|
T Consensus       176 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g  255 (364)
T 3ljn_A          176 PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAA  255 (364)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Confidence            88888888888888888888877     8888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHccccc
Q 015680          365 NKNLIKLLEDAKCTQ  379 (403)
Q Consensus       365 ~~~~v~~Ll~~~~~~  379 (403)
                      +.+++++|+++|++.
T Consensus       256 ~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          256 MVLLTKELLQKTDVF  270 (364)
T ss_dssp             CHHHHHHHHHHSCHH
T ss_pred             hHHHHHHHHHcCCch
Confidence            888888888887653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.5e-37  Score=275.23  Aligned_cols=197  Identities=24%  Similarity=0.293  Sum_probs=158.0

Q ss_pred             chhhHhhhHHHhhccCCHHHHHHHHHcCCC--------ccccCCCCCcHHHHHHHcCcH-HHHHHHHhcCCCCCcCCCCC
Q 015680          186 HEAELALRFNSAAYHGDLYQLKGLIRAGAD--------LNKTDYDGRSPLHLATSRGYE-DITLFLIQKGVDINIKDKFG  256 (403)
Q Consensus       186 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~--------~~~~~~~g~t~L~~A~~~~~~-~~~~~Ll~~~~~~~~~~~~g  256 (403)
                      .+..+.++|+.|+..|+.++|++|++.+++        ++..+..+.||||.|+..+.. .++++|++.|+++|.+|..|
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G   86 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG   86 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTS
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC
Confidence            455678899999999999999999998865        455677899999999988765 58899999999999999999


Q ss_pred             CcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHH
Q 015680          257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYL  334 (403)
Q Consensus       257 ~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~  334 (403)
                      +||||+|+..|+.+++++|++++++++..+  |.||+|+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~  166 (269)
T 4b93_B           87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHE  166 (269)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGG
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence            999999999999999999999999988765  679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcccccccc
Q 015680          335 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE  382 (403)
Q Consensus       335 ~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~  382 (403)
                      ++++|+++|+|++.++..|.||||+|+.+|+.++|++|+++|++.-..
T Consensus       167 ~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~  214 (269)
T 4b93_B          167 LVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVL  214 (269)
T ss_dssp             GHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred             HHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            999999999999999999999999999999999999999999986544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.9e-36  Score=264.19  Aligned_cols=204  Identities=30%  Similarity=0.363  Sum_probs=187.7

Q ss_pred             HhhhHHHhhccCCHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCC
Q 015680          190 LALRFNSAAYHGDLYQLKGLIRAGAD-LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  268 (403)
Q Consensus       190 ~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~  268 (403)
                      +.++|+.|+..|+.+.++++++.+.. ++..+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   85 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX   85 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH
Confidence            45789999999999999999998754 67788999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCc
Q 015680          269 DGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV  346 (403)
Q Consensus       269 ~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~  346 (403)
                      .+++++|+++|++++..+  |.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|+++
T Consensus        86 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  165 (231)
T 3aji_A           86 DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST  165 (231)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc
Confidence            999999999999998765  679999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccccccccccchhhhh
Q 015680          347 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIA  394 (403)
Q Consensus       347 ~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  394 (403)
                      +.+|..|.||||+|+..|+.+++++|+++|++..... ..+.+++.++
T Consensus       166 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~g~t~l~~A  212 (231)
T 3aji_A          166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN-KEEKTPLQVA  212 (231)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC-TTSCCHHHHS
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHH
Confidence            9999999999999999999999999999999865443 3334444443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=5.4e-38  Score=277.16  Aligned_cols=196  Identities=23%  Similarity=0.231  Sum_probs=180.6

Q ss_pred             chhhHhhhHHHhhccCCHHHHHHHHHcCC----CccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHH
Q 015680          186 HEAELALRFNSAAYHGDLYQLKGLIRAGA----DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL  261 (403)
Q Consensus       186 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~  261 (403)
                      .+.+|.||||+|+..|+.+++++|++.+.    +++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   83 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH   83 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHH
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            46678899999999999999999998764    68999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHcCCCc------cc--cCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCChHHHHHHHcCc
Q 015680          262 EAIKCGHDGVTSLLVKEGASL------NV--DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDY-DHRTPLHVAASEGL  332 (403)
Q Consensus       262 ~A~~~~~~~~v~~L~~~~~~~------~~--~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~-~g~t~Lh~A~~~~~  332 (403)
                      +|+..|+.+++++|++++.+.      +.  ..|.||||+|+..|+.+++++|++.|++++..+. .|.||||+|+..|+
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~  163 (236)
T 1ikn_D           84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN  163 (236)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            999999999999999998753      22  3478999999999999999999999999999997 99999999999999


Q ss_pred             HHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccc
Q 015680          333 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS  381 (403)
Q Consensus       333 ~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~  381 (403)
                      .+++++|+++|++++.+|..|.||||+|+.+|+.+++++|+++|+++..
T Consensus       164 ~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~  212 (236)
T 1ikn_D          164 PDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ  212 (236)
T ss_dssp             HHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGS
T ss_pred             HHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhh
Confidence            9999999999999999999999999999999999999999999998763

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.7e-37  Score=276.08  Aligned_cols=193  Identities=21%  Similarity=0.153  Sum_probs=179.4

Q ss_pred             HhhhHHHhhccCCHH----HHHHHHHcCCCccc----cCCCCCcHHHHHHHc---CcHHHHHHHHhcCCCCCcC------
Q 015680          190 LALRFNSAAYHGDLY----QLKGLIRAGADLNK----TDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIK------  252 (403)
Q Consensus       190 ~~~~l~~a~~~~~~~----~~~~ll~~~~~~~~----~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~------  252 (403)
                      |.||||.|+..|+.+    +++++++.|++++.    .+..|+||||+|+..   |+.+++++|++.|++++..      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            578999999999997    66777789999998    899999999999999   9999999999998876633      


Q ss_pred             -----CCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC---------------CCchHHHHHHcCCHHHHHHHHH---C
Q 015680          253 -----DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---------------AGSFLCIAVARGDSDLLKRVLS---N  309 (403)
Q Consensus       253 -----~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~---------------~~~~l~~a~~~~~~~~v~~Ll~---~  309 (403)
                           |..|.||||+|+..|+.+++++|+++|++++..+               |.||||+|+..|+.+++++|++   .
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  161 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ  161 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence                 3679999999999999999999999999998876               7799999999999999999999   9


Q ss_pred             CCCCCCCCCCCChHHHHHHH--cCcHH-------HHHHHHHcCCCc-------ccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 015680          310 GVDPNSRDYDHRTPLHVAAS--EGLYL-------MAKLLLEAGASV-------FTKDRWGNTPLDEGRMCGNKNLIKLLE  373 (403)
Q Consensus       310 ~~~~~~~~~~g~t~Lh~A~~--~~~~~-------~~~~Ll~~g~d~-------~~~~~~g~t~l~~A~~~~~~~~v~~Ll  373 (403)
                      |++++.+|..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|.||||+|+.+|+.+++++|+
T Consensus       162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll  241 (256)
T 2etb_A          162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL  241 (256)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999  78888       999999999999       899999999999999999999999999


Q ss_pred             Hcccccccc
Q 015680          374 DAKCTQLSE  382 (403)
Q Consensus       374 ~~~~~~~~~  382 (403)
                      ++|++...+
T Consensus       242 ~~g~~~~~~  250 (256)
T 2etb_A          242 QREFSGAAA  250 (256)
T ss_dssp             HHHHHHHHH
T ss_pred             hCCCCCCCc
Confidence            999976543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=9.7e-36  Score=269.57  Aligned_cols=223  Identities=26%  Similarity=0.285  Sum_probs=197.4

Q ss_pred             HHHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHH
Q 015680          158 VLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYED  237 (403)
Q Consensus       158 ll~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  237 (403)
                      .++.+...+..++...+++...+  ....+..+.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus        42 ~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  119 (285)
T 1wdy_A           42 PLHNAVQMSREDIVELLLRHGAD--PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK  119 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHH
Confidence            33444444444444444433322  2334567889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCcC----------CCCCCcHHHHHHHcCChHHHHHHHHc-CCCccccC--CCchHHHHHHcCC----H
Q 015680          238 ITLFLIQKGVDINIK----------DKFGNTPLLEAIKCGHDGVTSLLVKE-GASLNVDD--AGSFLCIAVARGD----S  300 (403)
Q Consensus       238 ~~~~Ll~~~~~~~~~----------~~~g~t~l~~A~~~~~~~~v~~L~~~-~~~~~~~~--~~~~l~~a~~~~~----~  300 (403)
                      ++++|++.|++++..          +..|.||||+|+..|+.+++++|+++ |.+++..+  |.||+|+|+..++    .
T Consensus       120 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  199 (285)
T 1wdy_A          120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE  199 (285)
T ss_dssp             HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHH
T ss_pred             HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHH
Confidence            999999999999887          77899999999999999999999998 99888765  7799999999999    9


Q ss_pred             HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHH-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccc
Q 015680          301 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ  379 (403)
Q Consensus       301 ~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~-~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  379 (403)
                      +++++|++.|++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+.+|+.+++++|+++|++.
T Consensus       200 ~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~  279 (285)
T 1wdy_A          200 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST  279 (285)
T ss_dssp             HHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred             HHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999 89999999999999999999999999999999999986


Q ss_pred             ccc
Q 015680          380 LSE  382 (403)
Q Consensus       380 ~~~  382 (403)
                      -..
T Consensus       280 ~~~  282 (285)
T 1wdy_A          280 DCG  282 (285)
T ss_dssp             CCS
T ss_pred             Ccc
Confidence            544

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-36  Score=286.33  Aligned_cols=226  Identities=19%  Similarity=0.245  Sum_probs=195.3

Q ss_pred             cchHHHHHhhhccccchhhhhccc------ceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHH
Q 015680          154 DGRKVLTNLLEGKESNLRLKQVES------DITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPL  227 (403)
Q Consensus       154 ~~~~ll~~ll~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L  227 (403)
                      .+...++.+...+..++...++..      +.....+..+..+.||||+|+..|+.+++++|++.|++++..+..|.|||
T Consensus       124 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L  203 (373)
T 2fo1_E          124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL  203 (373)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHH
Confidence            345555555555554443333210      12233455677889999999999999999999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHHHhcC---CCCCcCCCCCCcHHHHHHHcC---ChHHHHHHHHcCCCccc----------cCCCchH
Q 015680          228 HLATSRGYEDITLFLIQKG---VDINIKDKFGNTPLLEAIKCG---HDGVTSLLVKEGASLNV----------DDAGSFL  291 (403)
Q Consensus       228 ~~A~~~~~~~~~~~Ll~~~---~~~~~~~~~g~t~l~~A~~~~---~~~~v~~L~~~~~~~~~----------~~~~~~l  291 (403)
                      |+|+..|+.+++++|++.+   ++++..|..|.||||+|+..+   +.+++++|+++|++++.          ..|.|||
T Consensus       204 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~L  283 (373)
T 2fo1_E          204 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL  283 (373)
T ss_dssp             HHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH
T ss_pred             HHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHH
Confidence            9999999999999999987   799999999999999999998   79999999999999875          2478999


Q ss_pred             HHHHHcCCHHHHHHHHHCC-CCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHH
Q 015680          292 CIAVARGDSDLLKRVLSNG-VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK  370 (403)
Q Consensus       292 ~~a~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~  370 (403)
                      |+|+..|+.+++++|++.+ ++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.++++
T Consensus       284 h~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~  363 (373)
T 2fo1_E          284 HYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVD  363 (373)
T ss_dssp             HHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999876 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccccc
Q 015680          371 LLEDAKCTQ  379 (403)
Q Consensus       371 ~Ll~~~~~~  379 (403)
                      +|++++++.
T Consensus       364 ~Ll~~~a~~  372 (373)
T 2fo1_E          364 IFDRCRPER  372 (373)
T ss_dssp             HHHTTC---
T ss_pred             HHHhcCccc
Confidence            999999864

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1e-35  Score=247.87  Aligned_cols=156  Identities=46%  Similarity=0.651  Sum_probs=103.8

Q ss_pred             hHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHH
Q 015680          193 RFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT  272 (403)
Q Consensus       193 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v  272 (403)
                      +|+.||..|+.++|++|++.|+++|.+|..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.++ 
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~-   85 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV-   85 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH-
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH-
Confidence            4666666666666666666666666666666666666666666666666666666666666666666666665555554 


Q ss_pred             HHHHHcCCCccccCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCC
Q 015680          273 SLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRW  352 (403)
Q Consensus       273 ~~L~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~  352 (403)
                                                    +++|++.|++++.+|.+|+||||+|+..|+.+++++|+++|+|++.+|.+
T Consensus        86 ------------------------------v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~  135 (169)
T 4gpm_A           86 ------------------------------VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSD  135 (169)
T ss_dssp             ------------------------------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ------------------------------HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCC
Confidence                                          45555555666666777777777777777777777777777777777777


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHccccc
Q 015680          353 GNTPLDEGRMCGNKNLIKLLEDAKCTQ  379 (403)
Q Consensus       353 g~t~l~~A~~~~~~~~v~~Ll~~~~~~  379 (403)
                      |.||||+|+.+|+.+++++|+++|++.
T Consensus       136 G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A          136 GRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            777777777777777777777777753

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-35  Score=286.35  Aligned_cols=246  Identities=22%  Similarity=0.215  Sum_probs=191.5

Q ss_pred             hcchHHHHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHH
Q 015680          153 CDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATS  232 (403)
Q Consensus       153 ~~~~~ll~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~  232 (403)
                      ..+...++.+...+..++...+++...+.+  ..+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.
T Consensus        12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~--~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (437)
T 1n11_A           12 ESGLTPLHVASFMGHLPIVKNLLQRGASPN--VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR   89 (437)
T ss_dssp             ---CCHHHHHHHHTCHHHHHHHHHTTCCSC--CSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Confidence            345666777777777777766666544433  344556788888888888888888888888888888888888888888


Q ss_pred             cCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCC
Q 015680          233 RGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNG  310 (403)
Q Consensus       233 ~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~  310 (403)
                      .|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++++.+..+  +.||||+|+..|+.+++++|++.|
T Consensus        90 ~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  169 (437)
T 1n11_A           90 IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD  169 (437)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            888888888888888888888888888888888888888888888887766543  668888888888888888888888


Q ss_pred             CCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccccccc-----
Q 015680          311 VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHY-----  385 (403)
Q Consensus       311 ~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-----  385 (403)
                      ++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.+|+.+++++|+++|++.-.....     
T Consensus       170 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L  249 (437)
T 1n11_A          170 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL  249 (437)
T ss_dssp             CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            888888888888888888888888888888888888888888888888888888888888888888764433222     


Q ss_pred             ---cccchhhhhhhhccc
Q 015680          386 ---CSQGMIGIAENLLLL  400 (403)
Q Consensus       386 ---~~~~~~~~~~~l~~~  400 (403)
                         +..+..++++.|+..
T Consensus       250 ~~A~~~g~~~~v~~Ll~~  267 (437)
T 1n11_A          250 HLAAQEGHAEMVALLLSK  267 (437)
T ss_dssp             HHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHhc
Confidence               334567777777653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=8.6e-36  Score=263.05  Aligned_cols=190  Identities=27%  Similarity=0.389  Sum_probs=180.4

Q ss_pred             cchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcC-CCCCcCCCCCCcHHHHH
Q 015680          185 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKFGNTPLLEA  263 (403)
Q Consensus       185 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~A  263 (403)
                      ..+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.| .+++..+..|.||||+|
T Consensus        39 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A  118 (237)
T 3b7b_A           39 TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA  118 (237)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHH
T ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHH
Confidence            44566889999999999999999999999999999999999999999999999999999998 89999999999999999


Q ss_pred             HHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHH
Q 015680          264 IKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE  341 (403)
Q Consensus       264 ~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~  341 (403)
                      +..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|++
T Consensus       119 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  198 (237)
T 3b7b_A          119 TEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS  198 (237)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHH
Confidence            99999999999999999988765  7799999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 015680          342 AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  374 (403)
Q Consensus       342 ~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  374 (403)
                      +|+|++.+|..|.||||+|+.+++.+.+..|++
T Consensus       199 ~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          199 RDSDVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             TTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             cCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999977766654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.2e-36  Score=271.59  Aligned_cols=193  Identities=24%  Similarity=0.311  Sum_probs=177.1

Q ss_pred             CcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHH
Q 015680          184 GKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  263 (403)
Q Consensus       184 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A  263 (403)
                      +..+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+ .|.||||+|
T Consensus        86 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A  164 (285)
T 3d9h_A           86 NIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEA  164 (285)
T ss_dssp             CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHH
T ss_pred             CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHH
Confidence            3456678999999999999999999999999999999999999999999999999999999999998654 599999999


Q ss_pred             HHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHH
Q 015680          264 IKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE  341 (403)
Q Consensus       264 ~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~  341 (403)
                      +..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|++.|++++. +..|+||||+|+..|+.+++++|++
T Consensus       165 ~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~  243 (285)
T 3d9h_A          165 ARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMD  243 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999988765  77999999999999999999999999995 8899999999999999999999999


Q ss_pred             cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-ccccc
Q 015680          342 AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA-KCTQL  380 (403)
Q Consensus       342 ~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~-~~~~~  380 (403)
                      +|+|++.+|..|.||||+|+  ++.+++++|+++ |++..
T Consensus       244 ~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~  281 (285)
T 3d9h_A          244 FGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLP  281 (285)
T ss_dssp             TTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred             CCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence            99999999999999999999  567999999999 66543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.3e-35  Score=284.13  Aligned_cols=223  Identities=23%  Similarity=0.293  Sum_probs=188.1

Q ss_pred             HHHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHH
Q 015680          158 VLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYED  237 (403)
Q Consensus       158 ll~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  237 (403)
                      .++.+...+..++...+++....  .+..+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+
T Consensus       149 ~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  226 (437)
T 1n11_A          149 PLHVAAKYGKVRVAELLLERDAH--PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVE  226 (437)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC--TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            33344444444444444433322  2334556788999999999999999999999988888888999999999999999


Q ss_pred             HHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCC
Q 015680          238 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNS  315 (403)
Q Consensus       238 ~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~  315 (403)
                      ++++|++.|++++..+..|.||||+|+..|+.+++++|++++++++..+  |.||||+|+..|+.+++++|+++|++++.
T Consensus       227 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~  306 (437)
T 1n11_A          227 VARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA  306 (437)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCC
Confidence            9999999999999999999999999999999999999999988887655  67899999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcccccccc
Q 015680          316 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE  382 (403)
Q Consensus       316 ~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~  382 (403)
                      .|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.++|++|+++|+++-..
T Consensus       307 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~  373 (437)
T 1n11_A          307 TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV  373 (437)
T ss_dssp             CCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999986554

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=4.1e-35  Score=244.24  Aligned_cols=160  Identities=34%  Similarity=0.501  Sum_probs=127.1

Q ss_pred             cchHHHHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHc
Q 015680          154 DGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSR  233 (403)
Q Consensus       154 ~~~~ll~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~  233 (403)
                      .+..++ .+.+.+..++...+++...+  .+..+.+|.||||+|+..++.+++++|++.|++++.++..|+||||+|+..
T Consensus         4 lg~~L~-~Aa~~G~~~~v~~Ll~~Gad--vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~   80 (169)
T 4gpm_A            4 LGKRLI-EAAENGNKDRVKDLIENGAD--VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN   80 (169)
T ss_dssp             HHHHHH-HHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHH-HHHHcCCHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHc
Confidence            344544 45556666666667766544  455677899999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccCCCchHHHHHHcCCHHHHHHHHHCCCCC
Q 015680          234 GYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDP  313 (403)
Q Consensus       234 ~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~  313 (403)
                      |+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++                               |+++
T Consensus        81 g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-------------------------------gad~  129 (169)
T 4gpm_A           81 GHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-------------------------------GADV  129 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-------------------------------TCCT
T ss_pred             CCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-------------------------------CCCc
Confidence            999999999999999999999999999999988877666666555                               4556


Q ss_pred             CCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcc
Q 015680          314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF  347 (403)
Q Consensus       314 ~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~  347 (403)
                      +.+|.+|+||||+|+..|+.+++++|+++|+++.
T Consensus       130 ~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          130 NTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            6666777777777777777777777777777764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=4e-35  Score=267.95  Aligned_cols=197  Identities=30%  Similarity=0.403  Sum_probs=181.0

Q ss_pred             chhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHH
Q 015680          186 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  265 (403)
Q Consensus       186 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~  265 (403)
                      .+..+.++|+.||..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~  115 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS  115 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHC-CCC--------------------------CCCC
Q 015680          266 CGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSN-GVD--------------------------PNSR  316 (403)
Q Consensus       266 ~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~-~~~--------------------------~~~~  316 (403)
                      .|+.+++++|+++|++++..+  |.||+|+|+..++.++++.++.. +.+                          ....
T Consensus       116 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  195 (299)
T 1s70_B          116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (299)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             cCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhh
Confidence            999999999999999988765  77999999999999999887742 332                          2345


Q ss_pred             CCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcccccccc
Q 015680          317 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE  382 (403)
Q Consensus       317 ~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~  382 (403)
                      +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.+++++|+++|++.-..
T Consensus       196 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~  261 (299)
T 1s70_B          196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV  261 (299)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             cCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCc
Confidence            678999999999999999999999999999999999999999999999999999999999986543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=8.3e-36  Score=269.93  Aligned_cols=183  Identities=25%  Similarity=0.282  Sum_probs=159.0

Q ss_pred             CcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCC---------------
Q 015680          184 GKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD---------------  248 (403)
Q Consensus       184 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~---------------  248 (403)
                      +..+..+.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|++.|++               
T Consensus        39 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  118 (282)
T 1oy3_D           39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD  118 (282)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccc
Confidence            34567789999999999999999999999999999999999999999999999999999998755               


Q ss_pred             --------------------------------CCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC---CCchHHH
Q 015680          249 --------------------------------INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---AGSFLCI  293 (403)
Q Consensus       249 --------------------------------~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~---~~~~l~~  293 (403)
                                                      ++.++..|.||||+|+..|+.+++++|+++|++++..+   |.||||+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~  198 (282)
T 1oy3_D          119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL  198 (282)
T ss_dssp             -------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred             cCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHH
Confidence                                            67788899999999999999999999999999999865   7899999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCH
Q 015680          294 AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK  366 (403)
Q Consensus       294 a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~  366 (403)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|....+.
T Consensus       199 A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~~  271 (282)
T 1oy3_D          199 AVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDS  271 (282)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC----------------
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999887644

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=6.6e-35  Score=271.30  Aligned_cols=241  Identities=23%  Similarity=0.246  Sum_probs=193.2

Q ss_pred             HHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCc----------------------
Q 015680          159 LTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADL----------------------  216 (403)
Q Consensus       159 l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~----------------------  216 (403)
                      +..+.+.+..++...+++.+.+.+. ..+..|.||||+|+..|+.+++++|+++|+++                      
T Consensus        29 L~~Av~~g~~~~V~~LL~~Gadvn~-~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~  107 (337)
T 4g8k_A           29 LIKAVQNEDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKL  107 (337)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCc-cCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchh
Confidence            3334444444444444433332222 11234789999999999999999999988764                      


Q ss_pred             -----------cccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcC----------CCCCCcHHHHHHHcCChHHHHHH
Q 015680          217 -----------NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK----------DKFGNTPLLEAIKCGHDGVTSLL  275 (403)
Q Consensus       217 -----------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~----------~~~g~t~l~~A~~~~~~~~v~~L  275 (403)
                                 +..+..|.||||+|+..|+.+++++|++.|++++..          +..|.||||+|+..|+.++|++|
T Consensus       108 ~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~L  187 (337)
T 4g8k_A          108 LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL  187 (337)
T ss_dssp             HHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHH
T ss_pred             hHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHH
Confidence                       445677889999999999999999999999887654          34688999999999999999999


Q ss_pred             HH-cCCCccccC--CCchHHHHHHcCC----HHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHc-CCCcc
Q 015680          276 VK-EGASLNVDD--AGSFLCIAVARGD----SDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA-GASVF  347 (403)
Q Consensus       276 ~~-~~~~~~~~~--~~~~l~~a~~~~~----~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~-g~d~~  347 (403)
                      ++ .|++++..+  +.+++++++..++    ..++++|+++|++++.+|..|+||||+|+..|+.+++++|+.. |++++
T Consensus       188 L~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn  267 (337)
T 4g8k_A          188 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN  267 (337)
T ss_dssp             HHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTT
T ss_pred             HhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCccc
Confidence            96 588888765  6688888776654    3588999999999999999999999999999999999999985 89999


Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcccccccccc---ccccchhhhhhhhccc
Q 015680          348 TKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFH---YCSQGMIGIAENLLLL  400 (403)
Q Consensus       348 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~---~~~~~~~~~~~~l~~~  400 (403)
                      .+|.+|.||||+|+.+|+.++|++|+++|++.-....   .+..+..++++.||.-
T Consensus       268 ~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~~L~~A~~~~~~~iv~~Ll~~  323 (337)
T 4g8k_A          268 DTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLVMTARRNYDHSLVKVLLSH  323 (337)
T ss_dssp             CBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            9999999999999999999999999999998654332   2567788999999864

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=8.8e-35  Score=256.60  Aligned_cols=219  Identities=25%  Similarity=0.262  Sum_probs=133.6

Q ss_pred             HHHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccC-CCCCcHHHHHHHcCcH
Q 015680          158 VLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTD-YDGRSPLHLATSRGYE  236 (403)
Q Consensus       158 ll~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~g~t~L~~A~~~~~~  236 (403)
                      .+..++..+..++...+++...+  ....+..+.+|||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.
T Consensus        12 ~l~~A~~~g~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~   89 (240)
T 3eu9_A           12 DIVKATQYGIYERCRELVEAGYD--VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHL   89 (240)
T ss_dssp             CHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCH
T ss_pred             HHHHHHHcCChHHHHHHHHcCCC--cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCH
Confidence            34444455544444444444333  23334455666666666666666666666666655333 3366666666666666


Q ss_pred             HHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCC-HHHHHHHHHCCCCC
Q 015680          237 DITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGD-SDLLKRVLSNGVDP  313 (403)
Q Consensus       237 ~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~-~~~v~~Ll~~~~~~  313 (403)
                      +++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+  |.||+|+|+..++ .+++++|++.|+++
T Consensus        90 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~  169 (240)
T 3eu9_A           90 SMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV  169 (240)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCT
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCc
Confidence            66666666666666666666666666666666666666666666665543  4466666665554 56666666666666


Q ss_pred             CCCCC-CCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcccc
Q 015680          314 NSRDY-DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT  378 (403)
Q Consensus       314 ~~~~~-~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  378 (403)
                      +..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++++++
T Consensus       170 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          170 NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA  235 (240)
T ss_dssp             TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence            66664 566666666666666666666666666666666666666666666666666666666654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=3.5e-36  Score=271.54  Aligned_cols=197  Identities=21%  Similarity=0.196  Sum_probs=173.9

Q ss_pred             cchhhHhhhHHHhhccCCHHHHHHHHH----cCCCcc----ccCCCCCcHHHHHHHc---CcHHHHHHHHhcCCCC----
Q 015680          185 KHEAELALRFNSAAYHGDLYQLKGLIR----AGADLN----KTDYDGRSPLHLATSR---GYEDITLFLIQKGVDI----  249 (403)
Q Consensus       185 ~~~~~~~~~l~~a~~~~~~~~~~~ll~----~~~~~~----~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~----  249 (403)
                      ..+..+.++||.|+..|+.++++.|++    .+++++    ..+..|+||||+|+..   |+.+++++|++.|+++    
T Consensus         8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~   87 (273)
T 2pnn_A            8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK   87 (273)
T ss_dssp             ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred             CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence            456678999999999999999998887    456655    3578999999999987   9999999999987652    


Q ss_pred             ---C----cCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC----------------CCchHHHHHHcCCHHHHHHH
Q 015680          250 ---N----IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD----------------AGSFLCIAVARGDSDLLKRV  306 (403)
Q Consensus       250 ---~----~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~----------------~~~~l~~a~~~~~~~~v~~L  306 (403)
                         +    ..|..|.||||+|+..|+.+++++|+++|++++..+                |.||||+|+..|+.+++++|
T Consensus        88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  167 (273)
T 2pnn_A           88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL  167 (273)
T ss_dssp             HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHH
T ss_pred             HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence               2    256789999999999999999999999999998764                77999999999999999999


Q ss_pred             HH---CCCCCCCCCCCCChHHHHHHHcCc---------HHHHHHHHHcCCCcc-------cCCCCCCCHHHHHHHcCCHH
Q 015680          307 LS---NGVDPNSRDYDHRTPLHVAASEGL---------YLMAKLLLEAGASVF-------TKDRWGNTPLDEGRMCGNKN  367 (403)
Q Consensus       307 l~---~~~~~~~~~~~g~t~Lh~A~~~~~---------~~~~~~Ll~~g~d~~-------~~~~~g~t~l~~A~~~~~~~  367 (403)
                      ++   .|++++.+|..|+||||+|+..|+         .+++++|+++|++++       .+|..|.||||+|+.+|+.+
T Consensus       168 l~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~  247 (273)
T 2pnn_A          168 LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIG  247 (273)
T ss_dssp             HHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             HhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHH
Confidence            99   999999999999999999999988         899999999999996       48999999999999999999


Q ss_pred             HHHHHHHccc-cccc
Q 015680          368 LIKLLEDAKC-TQLS  381 (403)
Q Consensus       368 ~v~~Ll~~~~-~~~~  381 (403)
                      ++++|+++|+ |+..
T Consensus       248 iv~~Ll~~ga~dp~~  262 (273)
T 2pnn_A          248 VLAYILQREIHEPEC  262 (273)
T ss_dssp             HHHHHHHHHTC----
T ss_pred             HHHHHHHCCCCCchh
Confidence            9999999999 4443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=5.8e-35  Score=257.76  Aligned_cols=215  Identities=24%  Similarity=0.257  Sum_probs=194.4

Q ss_pred             cchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCC-CCCCcHHHHH
Q 015680          185 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEA  263 (403)
Q Consensus       185 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~A  263 (403)
                      ..+..+.++|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A   83 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA   83 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence            446678899999999999999999999999999999999999999999999999999999999987555 4599999999


Q ss_pred             HHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCc-HHHHHHHH
Q 015680          264 IKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL-YLMAKLLL  340 (403)
Q Consensus       264 ~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~-~~~~~~Ll  340 (403)
                      +..|+.+++++|+++|++++..+  +.||+|+|+..|+.+++++|++.|++++..+..|.||||+|+..++ .+++++|+
T Consensus        84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~  163 (240)
T 3eu9_A           84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL  163 (240)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHH
Confidence            99999999999999999998765  6799999999999999999999999999999999999999997765 89999999


Q ss_pred             HcCCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHccccccccccc--------cccchhhhhhhhcc
Q 015680          341 EAGASVFTKDR-WGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHY--------CSQGMIGIAENLLL  399 (403)
Q Consensus       341 ~~g~d~~~~~~-~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~--------~~~~~~~~~~~l~~  399 (403)
                      +.|++++..+. .|.||||+|+.+|+.+++++|+++|++.......        ...+..+++++|+.
T Consensus       164 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~  231 (240)
T 3eu9_A          164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQE  231 (240)
T ss_dssp             HTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            99999999987 8999999999999999999999999986543322        44556777777764

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=6.3e-36  Score=281.99  Aligned_cols=213  Identities=20%  Similarity=0.197  Sum_probs=192.6

Q ss_pred             hhHhhhHHHhhccCCHHHHHHHH--------HcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcH
Q 015680          188 AELALRFNSAAYHGDLYQLKGLI--------RAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP  259 (403)
Q Consensus       188 ~~~~~~l~~a~~~~~~~~~~~ll--------~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~  259 (403)
                      ..|.||||+|+..|+.+++++|+        +.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~  202 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  202 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCH
Confidence            57899999999999998888876        7899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHcC---CCcccc--CCCchHHHHHHcC---CHHHHHHHHHCCCCCCC--------CCCCCChH
Q 015680          260 LLEAIKCGHDGVTSLLVKEG---ASLNVD--DAGSFLCIAVARG---DSDLLKRVLSNGVDPNS--------RDYDHRTP  323 (403)
Q Consensus       260 l~~A~~~~~~~~v~~L~~~~---~~~~~~--~~~~~l~~a~~~~---~~~~v~~Ll~~~~~~~~--------~~~~g~t~  323 (403)
                      ||+|+..|+.+++++|++++   .+++..  +|.||||+|+..+   +.+++++|++.|++++.        .|..|.||
T Consensus       203 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~  282 (373)
T 2fo1_E          203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA  282 (373)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCT
T ss_pred             HHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCH
Confidence            99999999999999999987   667664  4789999999998   89999999999999876        57789999


Q ss_pred             HHHHHHcCcHHHHHHHHHcC-CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccccccc--------cccchhhhh
Q 015680          324 LHVAASEGLYLMAKLLLEAG-ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHY--------CSQGMIGIA  394 (403)
Q Consensus       324 Lh~A~~~~~~~~~~~Ll~~g-~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~--------~~~~~~~~~  394 (403)
                      ||+|+..|+.+++++|+++| ++++.+|..|.||||+|+.+|+.++|++|+++|++.-.....        ...+..+++
T Consensus       283 Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv  362 (373)
T 2fo1_E          283 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV  362 (373)
T ss_dssp             HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999875 999999999999999999999999999999999986543322        455677788


Q ss_pred             hhhccc
Q 015680          395 ENLLLL  400 (403)
Q Consensus       395 ~~l~~~  400 (403)
                      ++|+..
T Consensus       363 ~~Ll~~  368 (373)
T 2fo1_E          363 DIFDRC  368 (373)
T ss_dssp             HHHHTT
T ss_pred             HHHHhc
Confidence            877653

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.4e-35  Score=257.66  Aligned_cols=201  Identities=26%  Similarity=0.284  Sum_probs=181.4

Q ss_pred             CCHHHHHHHHHcCCCcccc-CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcC
Q 015680          201 GDLYQLKGLIRAGADLNKT-DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG  279 (403)
Q Consensus       201 ~~~~~~~~ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~  279 (403)
                      |+.+++++|+++|++++.. +..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++++
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~   81 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR   81 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            6788899999999998765 789999999999999999999999999999999999999999999999999999999998


Q ss_pred             C-Ccccc--CCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCH
Q 015680          280 A-SLNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP  356 (403)
Q Consensus       280 ~-~~~~~--~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~  356 (403)
                      . +++..  ++.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus        82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  161 (223)
T 2f8y_A           82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP  161 (223)
T ss_dssp             TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCH
Confidence            6 66654  47799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHccccccccccc--------cccchhhhhhhhcccc
Q 015680          357 LDEGRMCGNKNLIKLLEDAKCTQLSEFHY--------CSQGMIGIAENLLLLP  401 (403)
Q Consensus       357 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~  401 (403)
                      ||+|+.+|+.+++++|+++|++.......        ...+..+++++|+..+
T Consensus       162 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g  214 (223)
T 2f8y_A          162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN  214 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcC
Confidence            99999999999999999999976543222        4566778888887654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.4e-35  Score=258.51  Aligned_cols=187  Identities=24%  Similarity=0.213  Sum_probs=174.4

Q ss_pred             chhhHhhhHHHhhccCCHHHHHHHHHcC--CCccc-cCCCCCcHHHHHHHcCcHHHHHHHHhcC--CCCCcCCCCCCcHH
Q 015680          186 HEAELALRFNSAAYHGDLYQLKGLIRAG--ADLNK-TDYDGRSPLHLATSRGYEDITLFLIQKG--VDINIKDKFGNTPL  260 (403)
Q Consensus       186 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~--~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~--~~~~~~~~~g~t~l  260 (403)
                      .+..+.||||+|+..|+.+++++|++.|  ++++. .+..|.||||+|+..|+.+++++|++.|  ++++.++..|.|||
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L  111 (228)
T 2dzn_A           32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL  111 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHH
Confidence            4667899999999999999999999999  66666 7889999999999999999999999998  88999999999999


Q ss_pred             HHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCChHHHHHHHcCcHHHHH
Q 015680          261 LEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNG-VDPNSRDYDHRTPLHVAASEGLYLMAK  337 (403)
Q Consensus       261 ~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~Lh~A~~~~~~~~~~  337 (403)
                      |+|+..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|++.| ++++..|..|+||||+|+..|+.++++
T Consensus       112 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~  191 (228)
T 2dzn_A          112 HLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV  191 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999999998765  779999999999999999999999 999999999999999999999999999


Q ss_pred             HHH-HcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 015680          338 LLL-EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA  375 (403)
Q Consensus       338 ~Ll-~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  375 (403)
                      +|+ ++|+|++.+|..|.||+|+|+..   +++++|+++
T Consensus       192 ~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          192 LLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             HHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred             HHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence            999 89999999999999999999765   566777653

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.5e-34  Score=268.29  Aligned_cols=217  Identities=28%  Similarity=0.320  Sum_probs=195.9

Q ss_pred             cchhhHhhhHHHhhccCCHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHH
Q 015680          185 KHEAELALRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  263 (403)
Q Consensus       185 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A  263 (403)
                      ..+..+.++|+.|+..|+.+.++.++.. +.+++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|
T Consensus        19 ~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   98 (351)
T 3utm_A           19 LTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNA   98 (351)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             eeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH
Confidence            3456778999999999999999999975 788999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCC------------------------
Q 015680          264 IKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRD------------------------  317 (403)
Q Consensus       264 ~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~------------------------  317 (403)
                      +..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|+++|++++..+                        
T Consensus        99 ~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~  178 (351)
T 3utm_A           99 CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK  178 (351)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhc
Confidence            99999999999999999998866  6799999999999999999999999887654                        


Q ss_pred             ------------------------------CCCChHHHHHHHc---CcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcC
Q 015680          318 ------------------------------YDHRTPLHVAASE---GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG  364 (403)
Q Consensus       318 ------------------------------~~g~t~Lh~A~~~---~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~  364 (403)
                                                    ..|.||||+|+..   ++.+++++|+++|++++.+|..|.||||+|+.+|
T Consensus       179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  258 (351)
T 3utm_A          179 GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERA  258 (351)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             ccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcC
Confidence                                          4567999999999   6689999999999999999999999999999999


Q ss_pred             CHHHHHHHHHccccccccccc--------cccchhhhhhhhcccc
Q 015680          365 NKNLIKLLEDAKCTQLSEFHY--------CSQGMIGIAENLLLLP  401 (403)
Q Consensus       365 ~~~~v~~Ll~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~  401 (403)
                      +.+++++|+++|++.-.....        +..+..++++.|+..+
T Consensus       259 ~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  303 (351)
T 3utm_A          259 HNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG  303 (351)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            999999999999976543322        4566788888887653

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=7.9e-36  Score=267.17  Aligned_cols=194  Identities=20%  Similarity=0.170  Sum_probs=174.4

Q ss_pred             hHhhhHHHhhccCCHHHHHHHH----HcCCCccccC----CCCCcHHHHHH---HcCcHHHHHHHHhcCCC---------
Q 015680          189 ELALRFNSAAYHGDLYQLKGLI----RAGADLNKTD----YDGRSPLHLAT---SRGYEDITLFLIQKGVD---------  248 (403)
Q Consensus       189 ~~~~~l~~a~~~~~~~~~~~ll----~~~~~~~~~~----~~g~t~L~~A~---~~~~~~~~~~Ll~~~~~---------  248 (403)
                      .+.++||.|+..|+.+.++.|+    +.+++++..+    ..|+||||+|+   ..|+.+++++|++.|++         
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   83 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN   83 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence            3578999999999999655544    5899988665    67999999999   67999999999998743         


Q ss_pred             --CCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC----------------CCchHHHHHHcCCHHHHHHHHH--
Q 015680          249 --INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD----------------AGSFLCIAVARGDSDLLKRVLS--  308 (403)
Q Consensus       249 --~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~----------------~~~~l~~a~~~~~~~~v~~Ll~--  308 (403)
                        ++..|..|+||||+|+..|+.+++++|+++|++++..+                |.||||+|+..|+.+++++|++  
T Consensus        84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  163 (260)
T 3jxi_A           84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG  163 (260)
T ss_dssp             CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence              45556689999999999999999999999999999876                7899999999999999999999  


Q ss_pred             -CCCCCCCCCCCCChHHHHHHHcCc---------HHHHHHHHHcCCCc-------ccCCCCCCCHHHHHHHcCCHHHHHH
Q 015680          309 -NGVDPNSRDYDHRTPLHVAASEGL---------YLMAKLLLEAGASV-------FTKDRWGNTPLDEGRMCGNKNLIKL  371 (403)
Q Consensus       309 -~~~~~~~~~~~g~t~Lh~A~~~~~---------~~~~~~Ll~~g~d~-------~~~~~~g~t~l~~A~~~~~~~~v~~  371 (403)
                       .|++++.+|..|+||||+|+..++         .+++++|+++|+++       +.+|..|.||||+|+.+|+.+++++
T Consensus       164 ~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~  243 (260)
T 3jxi_A          164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH  243 (260)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHH
Confidence             999999999999999999998887         79999999999999       6799999999999999999999999


Q ss_pred             HHHcccccccc
Q 015680          372 LEDAKCTQLSE  382 (403)
Q Consensus       372 Ll~~~~~~~~~  382 (403)
                      |+++|+++...
T Consensus       244 Ll~~g~~~~~~  254 (260)
T 3jxi_A          244 IIRREIADAAA  254 (260)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHhCCCcccc
Confidence            99999976543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=3e-35  Score=267.04  Aligned_cols=215  Identities=16%  Similarity=0.162  Sum_probs=189.4

Q ss_pred             hHHHHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCc
Q 015680          156 RKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGY  235 (403)
Q Consensus       156 ~~ll~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~  235 (403)
                      ...++.+...+..++...++....+.+..    +|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+
T Consensus        32 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~  107 (285)
T 3kea_A           32 HSASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGN  107 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCC
Confidence            34455555555555555555444333332    37899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcCCCCC-CcHHHHHHHcCChHHHHHHHHcCCCcccc-CCCchHHHHHHcCCHHHHHHHHHCCCCC
Q 015680          236 EDITLFLIQKGVDINIKDKFG-NTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCIAVARGDSDLLKRVLSNGVDP  313 (403)
Q Consensus       236 ~~~~~~Ll~~~~~~~~~~~~g-~t~l~~A~~~~~~~~v~~L~~~~~~~~~~-~~~~~l~~a~~~~~~~~v~~Ll~~~~~~  313 (403)
                      .+++++|+++|++++.++..| .||||+|+..|+.+++++|+++|++.... +|.||||+|+..|+.+++++|+++|+++
T Consensus       108 ~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~  187 (285)
T 3kea_A          108 MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTST  187 (285)
T ss_dssp             HHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCC
Confidence            999999999999999999999 79999999999999999999999888655 6789999999999999999999999999


Q ss_pred             CCCCCCCChH-HHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccc
Q 015680          314 NSRDYDHRTP-LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS  381 (403)
Q Consensus       314 ~~~~~~g~t~-Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~  381 (403)
                      +..|..|+|| ||+|+..|+.+++++|+++|+|++.+|.       .|+..|+.+++++|+++|++.-.
T Consensus       188 n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~~  249 (285)
T 3kea_A          188 NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEYKS  249 (285)
T ss_dssp             CTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHHTT
T ss_pred             CcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCCCC
Confidence            9999999998 9999999999999999999999988873       56889999999999999997443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.4e-33  Score=260.72  Aligned_cols=215  Identities=27%  Similarity=0.290  Sum_probs=187.7

Q ss_pred             chhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCC-CCCcHHHHHHHcCcHHHHHHHHhcCCCC---------------
Q 015680          186 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDY-DGRSPLHLATSRGYEDITLFLIQKGVDI---------------  249 (403)
Q Consensus       186 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~~---------------  249 (403)
                      ...++.|+|+.|+..|++++|++||++|+++|.++. .|+||||+|+..|+.++|++|+++|+++               
T Consensus        21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~  100 (337)
T 4g8k_A           21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAA  100 (337)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHH
Confidence            456788999999999999999999999999998875 5999999999999999999999988765               


Q ss_pred             ------------------CcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCcccc------------CCCchHHHHHHcCC
Q 015680          250 ------------------NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD------------DAGSFLCIAVARGD  299 (403)
Q Consensus       250 ------------------~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~------------~~~~~l~~a~~~~~  299 (403)
                                        +..|..|.||+|+|+..|+.+++++|+++|++++..            .|.||||+|+..|+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~  180 (337)
T 4g8k_A          101 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH  180 (337)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTC
T ss_pred             hcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCC
Confidence                              445678999999999999999999999999988753            35799999999999


Q ss_pred             HHHHHHHHH-CCCCCCCCCCCCChHHHHHHHcCc----HHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 015680          300 SDLLKRVLS-NGVDPNSRDYDHRTPLHVAASEGL----YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  374 (403)
Q Consensus       300 ~~~v~~Ll~-~~~~~~~~~~~g~t~Lh~A~~~~~----~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  374 (403)
                      .+++++|++ .|++++..|..|.||+|.++..+.    ..++++|+++|+|++.+|..|.||||+|+..|+.+++++|++
T Consensus       181 ~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~  260 (337)
T 4g8k_A          181 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE  260 (337)
T ss_dssp             HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence            999999995 699999999999999998887653    468999999999999999999999999999999999999998


Q ss_pred             c-ccccccccc--------ccccchhhhhhhhccc
Q 015680          375 A-KCTQLSEFH--------YCSQGMIGIAENLLLL  400 (403)
Q Consensus       375 ~-~~~~~~~~~--------~~~~~~~~~~~~l~~~  400 (403)
                      . |++.-....        .+..+..++++.||.-
T Consensus       261 ~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  295 (337)
T 4g8k_A          261 QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR  295 (337)
T ss_dssp             STTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT
T ss_pred             hcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            6 554322221        2566788999998864

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.1e-34  Score=262.03  Aligned_cols=193  Identities=27%  Similarity=0.383  Sum_probs=173.7

Q ss_pred             CcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHH
Q 015680          184 GKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  263 (403)
Q Consensus       184 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A  263 (403)
                      +..+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  146 (299)
T 1s70_B           67 NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA  146 (299)
T ss_dssp             TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHH
Confidence            34556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHc-CCCccc----------------------------cCCCchHHHHHHcCCHHHHHHHHHCCCCCC
Q 015680          264 IKCGHDGVTSLLVKE-GASLNV----------------------------DDAGSFLCIAVARGDSDLLKRVLSNGVDPN  314 (403)
Q Consensus       264 ~~~~~~~~v~~L~~~-~~~~~~----------------------------~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~  314 (403)
                      +..++.+++++++.. +.+++.                            ..|.||||+|+..|+.+++++|++.|++++
T Consensus       147 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~  226 (299)
T 1s70_B          147 EEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN  226 (299)
T ss_dssp             CSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT
T ss_pred             HhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence            999999999877753 444432                            357899999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccc
Q 015680          315 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC  377 (403)
Q Consensus       315 ~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  377 (403)
                      ..|..|+||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+.. ..++++.+++...
T Consensus       227 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~~~  288 (299)
T 1s70_B          227 IKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED-ILGYLEELQKKQN  288 (299)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-GGHHHHHHHHHTT
T ss_pred             CcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH-HHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999764 4555555555443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=8.7e-34  Score=256.11  Aligned_cols=190  Identities=22%  Similarity=0.266  Sum_probs=178.1

Q ss_pred             hhHhhhHHHhhccCCHHHHHHHHHcCCC--ccccCCCCCcHHHHHHHcCcHHHHHHHHhcCC-CCCcCCCCCCcHHHHHH
Q 015680          188 AELALRFNSAAYHGDLYQLKGLIRAGAD--LNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAI  264 (403)
Q Consensus       188 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~g~t~l~~A~  264 (403)
                      ....+++|.|+..|+.+.++.+++.+.+  +|..|..|+||||+|+..|+.+++++|++.|+ +++..|..|.||||+|+
T Consensus        74 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~  153 (276)
T 4hbd_A           74 LACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA  153 (276)
T ss_dssp             HHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence            3455678999999999999999988766  88899999999999999999999999999998 99999999999999999


Q ss_pred             -----HcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHH
Q 015680          265 -----KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAK  337 (403)
Q Consensus       265 -----~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~  337 (403)
                           ..++.+++++|++.|...+..+  |.||||+|+..|+.+++++|++.|++++.+|.+|+||||+|+..|+.++++
T Consensus       154 ~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          154 LATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             GCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence                 5678999999999998777654  789999999999999999999999999999999999999999999999999


Q ss_pred             HHHH-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccc
Q 015680          338 LLLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC  377 (403)
Q Consensus       338 ~Ll~-~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  377 (403)
                      +|++ .|+|++.+|..|.||||+|+.+|+.+++++|++++.
T Consensus       234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             HHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            9999 899999999999999999999999999999998864

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=4.9e-33  Score=237.37  Aligned_cols=161  Identities=29%  Similarity=0.387  Sum_probs=154.5

Q ss_pred             ccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHH
Q 015680          216 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCI  293 (403)
Q Consensus       216 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~  293 (403)
                      ++.+|..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..+  |.||||+
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  107 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW  107 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999988766  7799999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 015680          294 AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE  373 (403)
Q Consensus       294 a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  373 (403)
                      |+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+
T Consensus       108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  187 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT  187 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hcc
Q 015680          374 DAK  376 (403)
Q Consensus       374 ~~~  376 (403)
                      ++|
T Consensus       188 ~~~  190 (192)
T 2rfm_A          188 EVR  190 (192)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            876

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=2.2e-32  Score=227.94  Aligned_cols=161  Identities=27%  Similarity=0.323  Sum_probs=139.1

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCC
Q 015680          222 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGD  299 (403)
Q Consensus       222 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~  299 (403)
                      .|.||||.|+..|+.+++++|++.+.+++.+|..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            46788888888888888888888888888888888888888888888888888888877777654  5678888888888


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccc
Q 015680          300 SDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ  379 (403)
Q Consensus       300 ~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  379 (403)
                      .+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++++++.
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            88888888888999999999999999999999999999999999999999999999999999999999999999998875


Q ss_pred             ccc
Q 015680          380 LSE  382 (403)
Q Consensus       380 ~~~  382 (403)
                      ...
T Consensus       162 ~~~  164 (167)
T 3v31_A          162 LQN  164 (167)
T ss_dssp             CSS
T ss_pred             HHH
Confidence            543

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=2.6e-32  Score=226.16  Aligned_cols=155  Identities=27%  Similarity=0.360  Sum_probs=126.2

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCH
Q 015680          223 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDS  300 (403)
Q Consensus       223 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~  300 (403)
                      ..||||.|+..|+.+++++|++.|++++.+|..|+||||+|+. |+.+++++|+++|++++..+  |.||||+|+..|+.
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   83 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   83 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            4567777777777777777777777777777777777777777 77777777777777766544  56777777777788


Q ss_pred             HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCC-cccCCCCCCCHHHHHHHcCCHHHHHHHHHcccc
Q 015680          301 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT  378 (403)
Q Consensus       301 ~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  378 (403)
                      +++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+.+|+.+++++|+++|+|
T Consensus        84 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A           84 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            888888888888888999999999999999999999999999998 588999999999999999999999999999985

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=6.1e-32  Score=225.71  Aligned_cols=154  Identities=33%  Similarity=0.465  Sum_probs=109.1

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCH
Q 015680          223 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDS  300 (403)
Q Consensus       223 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~  300 (403)
                      +.|+||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+  |.||||+|+..|+.
T Consensus        14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   93 (169)
T 2y1l_E           14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHL   93 (169)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            3445555555555555555555555555555555555555555555555555555555554433  44556666666666


Q ss_pred             HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcc
Q 015680          301 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK  376 (403)
Q Consensus       301 ~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  376 (403)
                      +++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.+++++|+++|
T Consensus        94 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E           94 EIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            6667777777788888888999999999999999999999999999999999999999999999999999998875

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=3.4e-32  Score=227.89  Aligned_cols=158  Identities=30%  Similarity=0.377  Sum_probs=92.0

Q ss_pred             hhHHHhhccCCHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChH
Q 015680          192 LRFNSAAYHGDLYQLKGLIRAGAD-LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG  270 (403)
Q Consensus       192 ~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~  270 (403)
                      +|||.|+..|+.+++++|++.+.+ ++..+..|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+  
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--   81 (172)
T 3v30_A            4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY--   81 (172)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC--
T ss_pred             hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC--
Confidence            455555555555555555555544 44455555555555555555555555555555555555555555555555554  


Q ss_pred             HHHHHHHcCCCccccCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCC
Q 015680          271 VTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD  350 (403)
Q Consensus       271 ~v~~L~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~  350 (403)
                                                   .+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|
T Consensus        82 -----------------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  132 (172)
T 3v30_A           82 -----------------------------TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEA  132 (172)
T ss_dssp             -----------------------------HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             -----------------------------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence                                         455555555555555566666666666666666666666666666666666


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcccccc
Q 015680          351 RWGNTPLDEGRMCGNKNLIKLLEDAKCTQL  380 (403)
Q Consensus       351 ~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~  380 (403)
                      ..|.||||+|+.+|+.+++++|++++++..
T Consensus       133 ~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (172)
T 3v30_A          133 DSGYTPMDLAVALGYRKVQQVIENHILKLF  162 (172)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            666666666666666666666666666543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=5.9e-33  Score=260.89  Aligned_cols=193  Identities=22%  Similarity=0.269  Sum_probs=178.2

Q ss_pred             hhHhhhHHHhhccCCHHHHHHHHHc----CCCccc-----------------cCCCCCcHHHHHHHcC--cHHHHHHHHh
Q 015680          188 AELALRFNSAAYHGDLYQLKGLIRA----GADLNK-----------------TDYDGRSPLHLATSRG--YEDITLFLIQ  244 (403)
Q Consensus       188 ~~~~~~l~~a~~~~~~~~~~~ll~~----~~~~~~-----------------~~~~g~t~L~~A~~~~--~~~~~~~Ll~  244 (403)
                      .++.||||+|+..|+.+++++|++.    +.+++.                 .+..|.||||+|+..|  +.+++++|++
T Consensus        82 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~  161 (364)
T 3ljn_A           82 WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ  161 (364)
T ss_dssp             BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHH
Confidence            4678999999999999999999998    888776                 7889999999999999  9999999999


Q ss_pred             cCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCC-----ccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q 015680          245 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS-----LNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRD  317 (403)
Q Consensus       245 ~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~-----~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~  317 (403)
                      .|++++.+|..|.||||+|+..|+.+++++|+++|++     ++..+  |.||||+|+..|+.+++++|+++|++++..|
T Consensus       162 ~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d  241 (364)
T 3ljn_A          162 LGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMED  241 (364)
T ss_dssp             HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCC
T ss_pred             cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            9999999999999999999999999999999999988     77654  7799999999999999999999999999999


Q ss_pred             CCCChHHHHHHHcCcHHHHHHHHHcCCCccc------------CCCCCCCHHHHHHHcCCHHHHHHHHHcccccc
Q 015680          318 YDHRTPLHVAASEGLYLMAKLLLEAGASVFT------------KDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQL  380 (403)
Q Consensus       318 ~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~------------~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~  380 (403)
                      ..|.||||+|+..|+.+++++|+++|++++.            .+..+.||++.|+..++.+.+..|++.+.+..
T Consensus       242 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~~~~  316 (364)
T 3ljn_A          242 NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV  316 (364)
T ss_dssp             TTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999877643            45678999999999999999998888877643

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=6.2e-33  Score=244.68  Aligned_cols=210  Identities=21%  Similarity=0.233  Sum_probs=180.8

Q ss_pred             cchHHHHHhhhccccchhhhhcccceee--ecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHH
Q 015680          154 DGRKVLTNLLEGKESNLRLKQVESDITF--HIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLAT  231 (403)
Q Consensus       154 ~~~~ll~~ll~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~  231 (403)
                      .+...++.++..+..++...++......  ..+..+..+.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus         7 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   86 (236)
T 1ikn_D            7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   86 (236)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            3455566666666666555555443322  45566778899999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHhcCCC------CCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCcccc---CCCchHHHHHHcCCHHH
Q 015680          232 SRGYEDITLFLIQKGVD------INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD---DAGSFLCIAVARGDSDL  302 (403)
Q Consensus       232 ~~~~~~~~~~Ll~~~~~------~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~---~~~~~l~~a~~~~~~~~  302 (403)
                      ..|+.+++++|++.|++      ++..+..|.||||+|+..|+.+++++|+++|++++..   .|.||||+|+..|+.++
T Consensus        87 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~  166 (236)
T 1ikn_D           87 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  166 (236)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             HcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            99999999999999876      4677888999999999999999999999999999876   46799999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcc--cCCCCCCCHHHHHHHc
Q 015680          303 LKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF--TKDRWGNTPLDEGRMC  363 (403)
Q Consensus       303 v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~--~~~~~g~t~l~~A~~~  363 (403)
                      +++|+++|++++..|..|.||||+|+..|+.+++++|+++|++..  .++..|.||.+.+...
T Consensus       167 v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          167 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             HHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred             HHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence            999999999999999999999999999999999999999999886  7888899998766544

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.98  E-value=3e-31  Score=233.17  Aligned_cols=178  Identities=24%  Similarity=0.257  Sum_probs=159.5

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhc-CCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCcc-----c--cCCCchHHH
Q 015680          222 DGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-----V--DDAGSFLCI  293 (403)
Q Consensus       222 ~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~-----~--~~~~~~l~~  293 (403)
                      .|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++++++.     .  .+|.||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            589999999999999999999997 99999999999999999999999999999999998763     2  257899999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCC-------------CCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHH
Q 015680          294 AVARGDSDLLKRVLSNGVDPNSRDY-------------DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG  360 (403)
Q Consensus       294 a~~~~~~~~v~~Ll~~~~~~~~~~~-------------~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A  360 (403)
                      |+..|+.+++++|++.|++++..+.             .|.||||+|+..|+.+++++|+++|+|++.+|..|.||||+|
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A  161 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL  161 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            9999999999999999999988765             799999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHH----HHHHHcccccc-----ccccc---------cccchhhhhhhhcc
Q 015680          361 RMCGNKNLI----KLLEDAKCTQL-----SEFHY---------CSQGMIGIAENLLL  399 (403)
Q Consensus       361 ~~~~~~~~v----~~Ll~~~~~~~-----~~~~~---------~~~~~~~~~~~l~~  399 (403)
                      +.+++.+++    ++|+++|++..     .....         +..+..++++.|+.
T Consensus       162 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~  218 (232)
T 2rfa_A          162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ  218 (232)
T ss_dssp             HTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999988    99999999753     11112         44556777777764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.98  E-value=1.3e-31  Score=224.25  Aligned_cols=142  Identities=18%  Similarity=0.168  Sum_probs=103.3

Q ss_pred             cHHHHHHHcCChHHHHHHHHcCCC-cccc--CCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHH
Q 015680          258 TPLLEAIKCGHDGVTSLLVKEGAS-LNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYL  334 (403)
Q Consensus       258 t~l~~A~~~~~~~~v~~L~~~~~~-~~~~--~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~  334 (403)
                      ||||.|+..|+.+++++|++.+.+ ++..  .|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   83 (172)
T 3v30_A            4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTD   83 (172)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHH
Confidence            444444444444444444444433 2222  2345555555555566666666667777888889999999999999999


Q ss_pred             HHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccccccc--------cccchhhhhhhhcc
Q 015680          335 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHY--------CSQGMIGIAENLLL  399 (403)
Q Consensus       335 ~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~--------~~~~~~~~~~~l~~  399 (403)
                      ++++|+++|++++.+|..|.||||+|+.+|+.+++++|+++|++.......        ...+..++++.|+.
T Consensus        84 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (172)
T 3v30_A           84 IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIEN  156 (172)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHH
Confidence            999999999999999999999999999999999999999999986544322        34456666666654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=7.5e-31  Score=219.08  Aligned_cols=158  Identities=32%  Similarity=0.464  Sum_probs=149.3

Q ss_pred             chhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHH
Q 015680          186 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  265 (403)
Q Consensus       186 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~  265 (403)
                      ....+.++|+.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+.
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL   89 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            34556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcC
Q 015680          266 CGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG  343 (403)
Q Consensus       266 ~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g  343 (403)
                      .|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|
T Consensus        90 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E           90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            999999999999999998765  779999999999999999999999999999999999999999999999999999876

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=2.9e-31  Score=219.87  Aligned_cols=155  Identities=23%  Similarity=0.323  Sum_probs=147.5

Q ss_pred             HhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCCh
Q 015680          190 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  269 (403)
Q Consensus       190 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  269 (403)
                      ..++|+.|+..|+.+++++|+++|++++..+..|+||||+|+. |+.+++++|++.|++++.+|..|.||||+|+..|+.
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   83 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   83 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            4689999999999999999999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCC
Q 015680          270 GVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVD-PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  345 (403)
Q Consensus       270 ~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d  345 (403)
                      +++++|+++|++++..+  |.||||+|+..|+.+++++|++.|++ ++..|..|.||||+|+..|+.+++++|+++|+|
T Consensus        84 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A           84 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99999999999988765  77999999999999999999999998 699999999999999999999999999999986

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=4.2e-31  Score=220.11  Aligned_cols=158  Identities=23%  Similarity=0.305  Sum_probs=151.8

Q ss_pred             hHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCC
Q 015680          189 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  268 (403)
Q Consensus       189 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~  268 (403)
                      .+.||||.|+..|+.+++++|++.+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCc
Q 015680          269 DGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV  346 (403)
Q Consensus       269 ~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~  346 (403)
                      .+++++|+++|++++..+  |.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++++.
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            999999999999998765  779999999999999999999999999999999999999999999999999999987665

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=1.5e-30  Score=213.57  Aligned_cols=147  Identities=28%  Similarity=0.425  Sum_probs=98.5

Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHH
Q 015680          225 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL  302 (403)
Q Consensus       225 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~  302 (403)
                      |+||.|+..|+.+++++|++.|++++ .+..|.||||+|+..|+.+++++|+++|++++..+  |.||||+|+..|+.++
T Consensus         4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   82 (153)
T 1awc_B            4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI   82 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHH
Confidence            44444444444444444444444443 24444455555555445555555554444444332  3455555555556666


Q ss_pred             HHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHH
Q 015680          303 LKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL  372 (403)
Q Consensus       303 v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~L  372 (403)
                      +++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.+++++|
T Consensus        83 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           83 VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            6666666777788888899999999999999999999999999998889999999999999999998887

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=3.9e-31  Score=219.81  Aligned_cols=156  Identities=29%  Similarity=0.329  Sum_probs=105.0

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHh-cCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHc
Q 015680          221 YDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVAR  297 (403)
Q Consensus       221 ~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~  297 (403)
                      ..+.||||.|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++..+  |.||||+|+..
T Consensus         6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   85 (165)
T 3twr_A            6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY   85 (165)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence            334455555555555555555554 233444444455555555555555555555555555554433  34555555556


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccc
Q 015680          298 GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC  377 (403)
Q Consensus       298 ~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  377 (403)
                      |+.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. ++.+++++|+++|+
T Consensus        86 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A           86 GHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            66666667777777788888888999999999999999999999999999899999999998766 88899999988876

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=4.8e-31  Score=225.03  Aligned_cols=161  Identities=25%  Similarity=0.290  Sum_probs=153.8

Q ss_pred             cCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHH
Q 015680          183 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE  262 (403)
Q Consensus       183 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~  262 (403)
                      .+..+..+.||||+|+..|+.+++++|++.+++++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  107 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW  107 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            34567778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHH
Q 015680          263 AIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL  340 (403)
Q Consensus       263 A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll  340 (403)
                      |+..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+
T Consensus       108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  187 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT  187 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHH
Confidence            999999999999999999998866  779999999999999999999999999999999999999999999999999999


Q ss_pred             HcC
Q 015680          341 EAG  343 (403)
Q Consensus       341 ~~g  343 (403)
                      ++|
T Consensus       188 ~~~  190 (192)
T 2rfm_A          188 EVR  190 (192)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            864

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=4.5e-30  Score=220.44  Aligned_cols=181  Identities=24%  Similarity=0.245  Sum_probs=163.3

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHhcCC-CCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHH
Q 015680          220 DYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVA  296 (403)
Q Consensus       220 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~  296 (403)
                      +..+.||||.|+..|+.+.++.|++.+. +++..|..|+||||+|+..|+.+++++|+++|++++..+  +.||||+|+.
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA   81 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            3568899999999999999999999876 999999999999999999999999999999999998766  6799999999


Q ss_pred             cCCHHHHHHHH-HCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcC-CCcccCCCCCCCHHHHHHHcCC-----HHHH
Q 015680          297 RGDSDLLKRVL-SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG-ASVFTKDRWGNTPLDEGRMCGN-----KNLI  369 (403)
Q Consensus       297 ~~~~~~v~~Ll-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g-~d~~~~~~~g~t~l~~A~~~~~-----~~~v  369 (403)
                      .|+.+++++|+ ..+++++..|..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..++     .+++
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v  161 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV  161 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence            99999999999 677899999999999999999999999999999999 9999999999999999999998     9999


Q ss_pred             HHHHHccccccccccc--------cccchhhhhhhhccc
Q 015680          370 KLLEDAKCTQLSEFHY--------CSQGMIGIAENLLLL  400 (403)
Q Consensus       370 ~~Ll~~~~~~~~~~~~--------~~~~~~~~~~~l~~~  400 (403)
                      ++|+++|++.-.....        ...+..++++.|+..
T Consensus       162 ~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          162 KLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             HHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            9999999986544322        345567777777653

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=3.8e-31  Score=236.15  Aligned_cols=178  Identities=24%  Similarity=0.233  Sum_probs=157.6

Q ss_pred             CCCcHHHHHHHcCcHH----HHHHHHhcCCCCCc----CCCCCCcHHHHHHHc---CChHHHHHHHHcCCCccc------
Q 015680          222 DGRSPLHLATSRGYED----ITLFLIQKGVDINI----KDKFGNTPLLEAIKC---GHDGVTSLLVKEGASLNV------  284 (403)
Q Consensus       222 ~g~t~L~~A~~~~~~~----~~~~Ll~~~~~~~~----~~~~g~t~l~~A~~~---~~~~~v~~L~~~~~~~~~------  284 (403)
                      .|+||||.|+..|+.+    ++++|++.|++++.    +|..|+||||+|+..   |+.+++++|+++|++++.      
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            4789999999999997    66777789999998    899999999999999   999999999999877653      


Q ss_pred             -------cCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-------------CChHHHHHHHcCcHHHHHHHHH---
Q 015680          285 -------DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYD-------------HRTPLHVAASEGLYLMAKLLLE---  341 (403)
Q Consensus       285 -------~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~-------------g~t~Lh~A~~~~~~~~~~~Ll~---  341 (403)
                             .+|.||||+|+..|+.+++++|++.|++++..+..             |.||||+|+..|+.+++++|++   
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                   34889999999999999999999999999999886             9999999999999999999999   


Q ss_pred             cCCCcccCCCCCCCHHHHHHH--cCCHH-------HHHHHHHccccc-------cccccc--------cccchhhhhhhh
Q 015680          342 AGASVFTKDRWGNTPLDEGRM--CGNKN-------LIKLLEDAKCTQ-------LSEFHY--------CSQGMIGIAENL  397 (403)
Q Consensus       342 ~g~d~~~~~~~g~t~l~~A~~--~~~~~-------~v~~Ll~~~~~~-------~~~~~~--------~~~~~~~~~~~l  397 (403)
                      +|++++.+|..|.||||+|+.  +++.+       ++++|+++|++.       -.....        +..+..++++.|
T Consensus       161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L  240 (256)
T 2etb_A          161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI  240 (256)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHH
Confidence            999999999999999999999  88998       999999999987       222211        445566777777


Q ss_pred             cc
Q 015680          398 LL  399 (403)
Q Consensus       398 ~~  399 (403)
                      +.
T Consensus       241 l~  242 (256)
T 2etb_A          241 LQ  242 (256)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.4e-30  Score=219.50  Aligned_cols=159  Identities=26%  Similarity=0.333  Sum_probs=92.0

Q ss_pred             HhhhHHHhhccCCHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCC
Q 015680          190 LALRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  268 (403)
Q Consensus       190 ~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~  268 (403)
                      +.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   84 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH   84 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            34455555555555555555555 34455555555555555555555555555555555555555555555555555555


Q ss_pred             hHHHHHHHHcCCCccccCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCccc
Q 015680          269 DGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT  348 (403)
Q Consensus       269 ~~~v~~L~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~  348 (403)
                      .++++                               +|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.
T Consensus        85 ~~~v~-------------------------------~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  133 (179)
T 3f6q_A           85 RDIVQ-------------------------------KLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI  133 (179)
T ss_dssp             HHHHH-------------------------------HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB
T ss_pred             HHHHH-------------------------------HHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch
Confidence            55554                               55555555555555666666666666666666666666666666


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHccccc
Q 015680          349 KDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ  379 (403)
Q Consensus       349 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  379 (403)
                      +|..|.||||+|+..++.+++++|+++|++.
T Consensus       134 ~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~  164 (179)
T 3f6q_A          134 CNKYGEMPVDKAKAPLRELLRERAEKMGQNL  164 (179)
T ss_dssp             CCTTSCCGGGGSCHHHHHHHHHHHHHTTCCC
T ss_pred             hccCCCCcHHHHHHHHHHHHHHHHHHhhcCc
Confidence            6666666666666666666666666666553

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.1e-30  Score=220.20  Aligned_cols=127  Identities=23%  Similarity=0.238  Sum_probs=94.2

Q ss_pred             CCcHHHHHHHcCChHHHHHHHHc-CCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCc
Q 015680          256 GNTPLLEAIKCGHDGVTSLLVKE-GASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL  332 (403)
Q Consensus       256 g~t~l~~A~~~~~~~~v~~L~~~-~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~  332 (403)
                      +.+|||.|+..|+.+++++|++. +.+++..+  |.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   84 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH   84 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            34444444444444444444444 22233222  3345555555555666666667777888888999999999999999


Q ss_pred             HHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcccccccc
Q 015680          333 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE  382 (403)
Q Consensus       333 ~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~  382 (403)
                      .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++....
T Consensus        85 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  134 (179)
T 3f6q_A           85 RDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC  134 (179)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBC
T ss_pred             HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchh
Confidence            99999999999999999999999999999999999999999999986543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=1.1e-31  Score=248.39  Aligned_cols=194  Identities=19%  Similarity=0.197  Sum_probs=149.7

Q ss_pred             hhHHHhhccCCHHHHHHHHHcCCCccc-cCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCC--
Q 015680          192 LRFNSAAYHGDLYQLKGLIRAGADLNK-TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH--  268 (403)
Q Consensus       192 ~~l~~a~~~~~~~~~~~ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~--  268 (403)
                      ..+|.|+..+..++++.|++.|++++. .+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+  
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~  178 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY  178 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHH
T ss_pred             chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccc
Confidence            346778888888899999999999998 78999999999999999999999999999999999999999999999888  


Q ss_pred             -hHHHHHHHHcC-CCccccC--CCchHHHHHH----cCCHHHHHHHHHC--------------------CCCCCCCCCCC
Q 015680          269 -DGVTSLLVKEG-ASLNVDD--AGSFLCIAVA----RGDSDLLKRVLSN--------------------GVDPNSRDYDH  320 (403)
Q Consensus       269 -~~~v~~L~~~~-~~~~~~~--~~~~l~~a~~----~~~~~~v~~Ll~~--------------------~~~~~~~~~~g  320 (403)
                       .++++.|++.+ ++++..+  |.||||+|+.    .|+.+++++|++.                    |++++..+..|
T Consensus       179 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g  258 (327)
T 1sw6_A          179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER  258 (327)
T ss_dssp             HTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred             cHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccC
Confidence             67777777775 5566544  7799999998    8899999999876                    88888899999


Q ss_pred             ChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccccccccccchhhhh
Q 015680          321 RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIA  394 (403)
Q Consensus       321 ~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  394 (403)
                      .||||.|+.      +++|+++  +++.+|..|.||||+|+.+|+.++|++|+++|++.-... ..+.+++.++
T Consensus       259 ~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d-~~G~TpL~~A  323 (327)
T 1sw6_A          259 KDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN-KSGLRPVDFG  323 (327)
T ss_dssp             -CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCC-TTSCCGGGGT
T ss_pred             CChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCCHHHHH
Confidence            999999985      8888888  577788999999999999999999999999999865553 4456666554

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=4.6e-31  Score=244.17  Aligned_cols=175  Identities=20%  Similarity=0.173  Sum_probs=152.1

Q ss_pred             ecCc-chhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCc---HHHHHHHHhcC-CCCCcCCCCC
Q 015680          182 HIGK-HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGY---EDITLFLIQKG-VDINIKDKFG  256 (403)
Q Consensus       182 ~~~~-~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~---~~~~~~Ll~~~-~~~~~~~~~g  256 (403)
                      .++. .+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+   .++++.|++.+ ++++.+|..|
T Consensus       122 dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g  201 (327)
T 1sw6_A          122 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN  201 (327)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTC
T ss_pred             CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCC
Confidence            3444 67789999999999999999999999999999999999999999999998   68888888876 7799999999


Q ss_pred             CcHHHHHHH----cCChHHHHHHHHc--------------------CCCccccC--CCchHHHHHHcCCHHHHHHHHHCC
Q 015680          257 NTPLLEAIK----CGHDGVTSLLVKE--------------------GASLNVDD--AGSFLCIAVARGDSDLLKRVLSNG  310 (403)
Q Consensus       257 ~t~l~~A~~----~~~~~~v~~L~~~--------------------~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~  310 (403)
                      +||||+|+.    .|+.+++++|++.                    |++++..+  |.||||+|+.      +++|++. 
T Consensus       202 ~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~-  274 (327)
T 1sw6_A          202 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN-  274 (327)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH-
T ss_pred             CCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh-
Confidence            999999999    8999999999987                    77777655  6799999996      8999988 


Q ss_pred             CCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcC
Q 015680          311 VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG  364 (403)
Q Consensus       311 ~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~  364 (403)
                       +++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+.+|
T Consensus       275 -~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          275 -MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             -TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             -CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence             68889999999999999999999999999999999999999999999998765

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=7.6e-30  Score=209.31  Aligned_cols=149  Identities=28%  Similarity=0.410  Sum_probs=143.0

Q ss_pred             HhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCCh
Q 015680          190 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  269 (403)
Q Consensus       190 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  269 (403)
                      ..++|+.|+..|+.+++++|++.|++++ .+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence            4689999999999999999999999886 588899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHH
Q 015680          270 GVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL  339 (403)
Q Consensus       270 ~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~L  339 (403)
                      +++++|+++|++++..+  |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus        81 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999998876  77999999999999999999999999999999999999999999999999987

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=4.2e-30  Score=211.50  Aligned_cols=150  Identities=29%  Similarity=0.373  Sum_probs=108.7

Q ss_pred             CcHHHHHHHcCcHHHHHHHHhc-CCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCH
Q 015680          224 RSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDS  300 (403)
Q Consensus       224 ~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~  300 (403)
                      .||||.|+..|+.+++++|++. +.+++..|..|.||||+ +..|+.+++++|+++|++++..+  |.||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   81 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence            3555555555555555555554 22555555555566655 55555555665555555555443  44666666666666


Q ss_pred             HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 015680          301 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA  375 (403)
Q Consensus       301 ~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  375 (403)
                      +++++|++.|++++.+|..|+||||+|+..|+.+++++|+++ ++++.+|..|.||||+|+.+|+.+++++|+++
T Consensus        82 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            777777777778888888899999999999999999999988 89999999999999999999999999999865

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.2e-33  Score=247.86  Aligned_cols=190  Identities=20%  Similarity=0.188  Sum_probs=173.2

Q ss_pred             cchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHH
Q 015680          185 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  264 (403)
Q Consensus       185 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~  264 (403)
                      ..+..+.++||.|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~   95 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAA   95 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHcCCCcccc---CCCchHHHH--HHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHH
Q 015680          265 KCGHDGVTSLLVKEGASLNVD---DAGSFLCIA--VARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL  339 (403)
Q Consensus       265 ~~~~~~~v~~L~~~~~~~~~~---~~~~~l~~a--~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~L  339 (403)
                      ..|+.+++++|+++|++++..   +|.||||+|  +..|+.+++++|++.|++++..|..|.||+|.++..+.   .++|
T Consensus        96 ~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~---~~~l  172 (229)
T 2vge_A           96 SCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG---DELS  172 (229)
T ss_dssp             HTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST---TBCC
T ss_pred             HcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc---cccC
Confidence            999999999999999999875   578999999  99999999999999999999999999999997665543   3677


Q ss_pred             HHcCCC--cccCCCCCCCHHHHHHHcCCHHHHHH-HHHccc
Q 015680          340 LEAGAS--VFTKDRWGNTPLDEGRMCGNKNLIKL-LEDAKC  377 (403)
Q Consensus       340 l~~g~d--~~~~~~~g~t~l~~A~~~~~~~~v~~-Ll~~~~  377 (403)
                      ++.|++  ++.+|..|.||||+|+.+|+.++|+. +++..+
T Consensus       173 l~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l~~~p  213 (229)
T 2vge_A          173 FREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFP  213 (229)
T ss_dssp             BCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGEESSC
T ss_pred             ccccccccccccCCCcccHHHHHHHcCCcceeehhhhhhCC
Confidence            888998  67889999999999999999999984 444443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=5.2e-31  Score=237.58  Aligned_cols=205  Identities=18%  Similarity=0.221  Sum_probs=159.5

Q ss_pred             cchHHHHHhhhccccchhhhhcccc--eeeecC----cchhhHhhhHHHhhcc---CCHHHHHHHHHcCCCc-------c
Q 015680          154 DGRKVLTNLLEGKESNLRLKQVESD--ITFHIG----KHEAELALRFNSAAYH---GDLYQLKGLIRAGADL-------N  217 (403)
Q Consensus       154 ~~~~ll~~ll~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~-------~  217 (403)
                      .+...+..++..+..++...++...  ......    ..+..+.||||+|+..   |+.+++++|++.|+++       +
T Consensus        12 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~   91 (273)
T 2pnn_A           12 YDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVN   91 (273)
T ss_dssp             CCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhh
Confidence            3445555555555555444443321  111111    2367889999999986   9999999999987542       2


Q ss_pred             c----cCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCC--------------CCCcHHHHHHHcCChHHHHHHHH--
Q 015680          218 K----TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK--------------FGNTPLLEAIKCGHDGVTSLLVK--  277 (403)
Q Consensus       218 ~----~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~--------------~g~t~l~~A~~~~~~~~v~~L~~--  277 (403)
                      .    .+..|.||||+|+..|+.+++++|+++|++++.++.              .|.||||+|+..|+.+++++|++  
T Consensus        92 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  171 (273)
T 2pnn_A           92 ASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNS  171 (273)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             cccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            2    566899999999999999999999999999999987              79999999999999999999999  


Q ss_pred             -cCCCccccC--CCchHHHHHHcCC---------HHHHHHHHHCCCCCC-------CCCCCCChHHHHHHHcCcHHHHHH
Q 015680          278 -EGASLNVDD--AGSFLCIAVARGD---------SDLLKRVLSNGVDPN-------SRDYDHRTPLHVAASEGLYLMAKL  338 (403)
Q Consensus       278 -~~~~~~~~~--~~~~l~~a~~~~~---------~~~v~~Ll~~~~~~~-------~~~~~g~t~Lh~A~~~~~~~~~~~  338 (403)
                       +|++++..+  |.||||+|+..|+         .+++++|++.|++++       .+|..|+||||+|+..|+.+++++
T Consensus       172 ~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~  251 (273)
T 2pnn_A          172 WQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAY  251 (273)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHH
Confidence             899998765  7799999999998         899999999999986       489999999999999999999999


Q ss_pred             HHHcCC-CcccCCCCCCCHHH
Q 015680          339 LLEAGA-SVFTKDRWGNTPLD  358 (403)
Q Consensus       339 Ll~~g~-d~~~~~~~g~t~l~  358 (403)
                      |+++|+ |+......+.+|-+
T Consensus       252 Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          252 ILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHHHHTC--------------
T ss_pred             HHHCCCCCchhhhhhhhhccC
Confidence            999999 88877777776644

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=6.2e-30  Score=212.55  Aligned_cols=157  Identities=32%  Similarity=0.443  Sum_probs=146.2

Q ss_pred             hhhHhhhHHHhhccCCHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHH
Q 015680          187 EAELALRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  265 (403)
Q Consensus       187 ~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~  265 (403)
                      +.++.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            55788999999999999999999985 46777888899999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcC
Q 015680          266 CGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG  343 (403)
Q Consensus       266 ~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g  343 (403)
                      .|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. |+.+++++|+++|
T Consensus        85 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A           85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred             cCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence            999999999999999998766  6799999999999999999999999999999999999999877 8999999999988


Q ss_pred             C
Q 015680          344 A  344 (403)
Q Consensus       344 ~  344 (403)
                      +
T Consensus       164 A  164 (165)
T 3twr_A          164 A  164 (165)
T ss_dssp             -
T ss_pred             c
Confidence            6

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=6.3e-29  Score=204.41  Aligned_cols=151  Identities=25%  Similarity=0.379  Sum_probs=143.8

Q ss_pred             HhhhHHHhhccCCHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCC
Q 015680          190 LALRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  268 (403)
Q Consensus       190 ~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~  268 (403)
                      +.++|+.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|++.|++++.+|..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            46899999999999999999998 35899999999999999 99999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHc
Q 015680          269 DGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA  342 (403)
Q Consensus       269 ~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~  342 (403)
                      .+++++|+++|++++..+  |.||||+|+..|+.+++++|++. ++++..|..|.||||+|+..|+.+++++|+++
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999999998765  77999999999999999999999 99999999999999999999999999999874

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1.8e-30  Score=229.37  Aligned_cols=188  Identities=15%  Similarity=0.097  Sum_probs=131.7

Q ss_pred             hhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcC
Q 015680          188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  267 (403)
Q Consensus       188 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~  267 (403)
                      ..|.||||.|+..++.+.++.++++|++++.. ..|.||||.|+..|+.+++++|++.|++++.+|..|+||||+|+..|
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            35788999999999999999999999888754 67889999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-hHHHHH--HHcCcHHHHHHHHHc
Q 015680          268 HDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHR-TPLHVA--ASEGLYLMAKLLLEA  342 (403)
Q Consensus       268 ~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~-t~Lh~A--~~~~~~~~~~~Ll~~  342 (403)
                      +.+++++|+++|++++..+  |.||||+|+..|+.+++++|+++|++++..+..|. ||||+|  +..|+.+++++|+++
T Consensus        82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~  161 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  161 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence            9999999999999888765  67999999999999999999999999998887776 999998  778889999999998


Q ss_pred             CCCcccC---------CCCCCCHHHHHHHcCCHHHHHHHHHcccc
Q 015680          343 GASVFTK---------DRWGNTPLDEGRMCGNKNLIKLLEDAKCT  378 (403)
Q Consensus       343 g~d~~~~---------~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  378 (403)
                      |++++..         +..+.+++++|...|.  +++.|.+.+.+
T Consensus       162 ~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~  204 (239)
T 1ycs_B          162 QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDED  204 (239)
T ss_dssp             HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTS
T ss_pred             hhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCC
Confidence            8887655         5568888888888886  44555544443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=7.3e-30  Score=228.32  Aligned_cols=161  Identities=20%  Similarity=0.261  Sum_probs=146.9

Q ss_pred             hhhHhhhHHHhh---ccCCHHHHHHHHHcCCC-----------ccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcC
Q 015680          187 EAELALRFNSAA---YHGDLYQLKGLIRAGAD-----------LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK  252 (403)
Q Consensus       187 ~~~~~~~l~~a~---~~~~~~~~~~ll~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  252 (403)
                      +..|.||||+|+   ..|+.+++++|++.|++           ++..+..|+||||+|+..|+.+++++|+++|++++.+
T Consensus        43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~  122 (260)
T 3jxi_A           43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ  122 (260)
T ss_dssp             TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc
Confidence            366899999999   78999999999998743           3444558999999999999999999999999999999


Q ss_pred             C--------------CCCCcHHHHHHHcCChHHHHHHHH---cCCCccccC--CCchHHHHHHcCC---------HHHHH
Q 015680          253 D--------------KFGNTPLLEAIKCGHDGVTSLLVK---EGASLNVDD--AGSFLCIAVARGD---------SDLLK  304 (403)
Q Consensus       253 ~--------------~~g~t~l~~A~~~~~~~~v~~L~~---~~~~~~~~~--~~~~l~~a~~~~~---------~~~v~  304 (403)
                      +              ..|.||||+|+..|+.+++++|++   +|++++..+  |.||||+|+..++         .++++
T Consensus       123 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~  202 (260)
T 3jxi_A          123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD  202 (260)
T ss_dssp             CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred             ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHH
Confidence            8              689999999999999999999999   899998865  7799999999888         79999


Q ss_pred             HHHHCCCCC-------CCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcc
Q 015680          305 RVLSNGVDP-------NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF  347 (403)
Q Consensus       305 ~Ll~~~~~~-------~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~  347 (403)
                      +|++.|+++       +..|..|+||||+|+..|+.+++++|+++|++..
T Consensus       203 ~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          203 LLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             HHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence            999999988       6799999999999999999999999999988764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=8.5e-29  Score=223.37  Aligned_cols=161  Identities=22%  Similarity=0.293  Sum_probs=152.7

Q ss_pred             cCcchhhHhhhHHHhhccCCHHHHHHHHHcCC-CccccCCCCCcHHHHHH-----HcCcHHHHHHHHhcCCCCCcCCCCC
Q 015680          183 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGA-DLNKTDYDGRSPLHLAT-----SRGYEDITLFLIQKGVDINIKDKFG  256 (403)
Q Consensus       183 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~g~t~L~~A~-----~~~~~~~~~~Ll~~~~~~~~~~~~g  256 (403)
                      .+..+..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+     ..++.+++++|++.|.+++..+..|
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g  183 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAG  183 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTC
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCC
Confidence            45667889999999999999999999999998 89999999999999999     6789999999999999999999999


Q ss_pred             CcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCChHHHHHHHcCcH
Q 015680          257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLS-NGVDPNSRDYDHRTPLHVAASEGLY  333 (403)
Q Consensus       257 ~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~Lh~A~~~~~~  333 (403)
                      +||||+|+..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|++ .|++++..|..|.||||+|+..|+.
T Consensus       184 ~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~  263 (276)
T 4hbd_A          184 QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQS  263 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCH
Confidence            999999999999999999999999998765  7799999999999999999999 8999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 015680          334 LMAKLLLEAG  343 (403)
Q Consensus       334 ~~~~~Ll~~g  343 (403)
                      +++++|++++
T Consensus       264 ~iv~~Ll~~~  273 (276)
T 4hbd_A          264 EIASMLYSRM  273 (276)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcc
Confidence            9999999864

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1.3e-29  Score=223.86  Aligned_cols=160  Identities=23%  Similarity=0.238  Sum_probs=119.4

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHc
Q 015680          220 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVAR  297 (403)
Q Consensus       220 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~  297 (403)
                      +..|.||||.|+..++.++++.|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++..+  |.||||+|+..
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            346899999999999999999999999999854 778999999999999999999999999988765  77999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCC-CHHHHH--HHcCCHHHHHHHHH
Q 015680          298 GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN-TPLDEG--RMCGNKNLIKLLED  374 (403)
Q Consensus       298 ~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~-t~l~~A--~~~~~~~~v~~Ll~  374 (403)
                      |+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|. ||||+|  +.+|+.+++++|++
T Consensus        81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~  160 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  160 (239)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998887 999999  88999999999999


Q ss_pred             cccccc
Q 015680          375 AKCTQL  380 (403)
Q Consensus       375 ~~~~~~  380 (403)
                      +|++.-
T Consensus       161 ~~a~~~  166 (239)
T 1ycs_B          161 VQEKMG  166 (239)
T ss_dssp             HHHHTT
T ss_pred             hhhccc
Confidence            998754

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=1.7e-28  Score=197.07  Aligned_cols=131  Identities=24%  Similarity=0.357  Sum_probs=91.3

Q ss_pred             CCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CChH
Q 015680          247 VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYD-HRTP  323 (403)
Q Consensus       247 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~-g~t~  323 (403)
                      ++++.++..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+. |+.+++++|++.|++++.+|.. |+||
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP   81 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence            3444444445555555555555555555555444444332  3455555555 5555666666666677777777 8889


Q ss_pred             HHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcccc
Q 015680          324 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT  378 (403)
Q Consensus       324 Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  378 (403)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+++.+++++|+++|+|
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999988889999999988888888888889999999999999999999888875

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=5.5e-28  Score=194.07  Aligned_cols=132  Identities=24%  Similarity=0.281  Sum_probs=126.0

Q ss_pred             CCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC---CCc
Q 015680          213 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---AGS  289 (403)
Q Consensus       213 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~---~~~  289 (403)
                      +++++..+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+. |+.+++++|+++|++++..+   |.|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            46788899999999999999999999999999999999999999999999999 99999999999999988765   679


Q ss_pred             hHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCC
Q 015680          290 FLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  345 (403)
Q Consensus       290 ~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d  345 (403)
                      |||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.+++++|+++|+|
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999986

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=3.1e-28  Score=200.34  Aligned_cols=143  Identities=22%  Similarity=0.211  Sum_probs=110.5

Q ss_pred             cccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCc-hHHH
Q 015680          217 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGS-FLCI  293 (403)
Q Consensus       217 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~-~l~~  293 (403)
                      +..+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+ .|+.+++++|+++|++++..+  |.| |||+
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            345677889999999999999999999999999999999999999985 888999999999988888765  566 9999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHH
Q 015680          294 AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG  360 (403)
Q Consensus       294 a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A  360 (403)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||.+-+
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999987744

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=3e-28  Score=206.06  Aligned_cols=161  Identities=23%  Similarity=0.317  Sum_probs=135.2

Q ss_pred             HhhhHHHhhccCCHHHHHHHHHcCCCccccC-CCCCcHHHHHHHcCcH----HHHHHHHhcCCCCCcCCCCCCcHHHHHH
Q 015680          190 LALRFNSAAYHGDLYQLKGLIRAGADLNKTD-YDGRSPLHLATSRGYE----DITLFLIQKGVDINIKDKFGNTPLLEAI  264 (403)
Q Consensus       190 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~g~t~L~~A~~~~~~----~~~~~Ll~~~~~~~~~~~~g~t~l~~A~  264 (403)
                      +.++|+.|+..|+.+.++.++..+.+  ..+ ..|+||||+|+..|+.    +++++|++.|+++|.+|..|+||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            44678899999999999888887643  344 6688999999988864    5899999999999999999999999998


Q ss_pred             HcCChHHHHHHHHcCCCccccCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-hHHHHHHHcC-----cHHHHHH
Q 015680          265 KCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHR-TPLHVAASEG-----LYLMAKL  338 (403)
Q Consensus       265 ~~~~~~~v~~L~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~-t~Lh~A~~~~-----~~~~~~~  338 (403)
                      ..|+.++.+                         ..+++++|+++|++++.+|..|+ ||||+|+..+     +.+++++
T Consensus        84 ~~~~~~~~~-------------------------~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~  138 (186)
T 3t8k_A           84 QGGGNDITG-------------------------TTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKL  138 (186)
T ss_dssp             HHCTTCHHH-------------------------HHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHH
T ss_pred             HcCCcchhh-------------------------HHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHH
Confidence            887654432                         24788899999999999999999 9999999844     4679999


Q ss_pred             HHH-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccc
Q 015680          339 LLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC  377 (403)
Q Consensus       339 Ll~-~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  377 (403)
                      |++ +|+|++.+|..|.||||+|+..|+.++|++|+++..
T Consensus       139 Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          139 IFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK  178 (186)
T ss_dssp             HHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence            999 999999999999999999999999999999987754

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=6.9e-29  Score=217.49  Aligned_cols=170  Identities=17%  Similarity=0.102  Sum_probs=146.6

Q ss_pred             HHHHHHcCCCccccC---CCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCc
Q 015680          206 LKGLIRAGADLNKTD---YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASL  282 (403)
Q Consensus       206 ~~~ll~~~~~~~~~~---~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~  282 (403)
                      ++.|+++|++++..+   ..+.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            456888888876544   45668899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHH--HHcCcHHHHHHHHHcCCCcccCCCCCCCHH
Q 015680          283 NVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRD-YDHRTPLHVA--ASEGLYLMAKLLLEAGASVFTKDRWGNTPL  357 (403)
Q Consensus       283 ~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~Lh~A--~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l  357 (403)
                      +..+  |.||||+|+..|+.+++++|++.|++++..+ ..|+||||+|  +..|+.+++++|+++|++++.+|..|.||+
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l  160 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL  160 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEES
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHH
Confidence            8765  7799999999999999999999999999987 6999999999  999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcccc
Q 015680          358 DEGRMCGNKNLIKLLEDAKCT  378 (403)
Q Consensus       358 ~~A~~~~~~~~v~~Ll~~~~~  378 (403)
                      +.++..+..   ++|++.|++
T Consensus       161 ~~~~~~~~~---~~ll~~ga~  178 (229)
T 2vge_A          161 WDYSAEFGD---ELSFREGES  178 (229)
T ss_dssp             SCBCCSSTT---BCCBCTTCE
T ss_pred             HHHhhcccc---ccCcccccc
Confidence            966655533   677888886

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=5.7e-26  Score=179.29  Aligned_cols=125  Identities=44%  Similarity=0.660  Sum_probs=90.5

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccCCCchHHHHHHcCCHHH
Q 015680          223 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDL  302 (403)
Q Consensus       223 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~l~~a~~~~~~~~  302 (403)
                      |+||||+|+..|+.+++++|++.|++++..+..|.||||+|+..                               ++.++
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-------------------------------~~~~~   50 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-------------------------------GHLEV   50 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH-------------------------------TCHHH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc-------------------------------CcHHH
Confidence            45555555555555555555555555555555555555555554                               45555


Q ss_pred             HHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcccc
Q 015680          303 LKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT  378 (403)
Q Consensus       303 v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  378 (403)
                      +++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++
T Consensus        51 ~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           51 VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            5556666667777778888888888888888888888888888888888888888888888888888888888875

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=5.2e-29  Score=233.10  Aligned_cols=204  Identities=15%  Similarity=0.010  Sum_probs=141.1

Q ss_pred             hhHhhhHHHhhccCCHHHHHHHHHcCCCc---cccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCC---CcCCCCCCcHHH
Q 015680          188 AELALRFNSAAYHGDLYQLKGLIRAGADL---NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI---NIKDKFGNTPLL  261 (403)
Q Consensus       188 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~---~~~~~~g~t~l~  261 (403)
                      .++.||||+|+..|+.+++++|+++|+..   +..+..|.||||+|+..|+.++|++|+++|+++   +..+.. .||||
T Consensus        90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh  168 (376)
T 2aja_A           90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFR  168 (376)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHH
T ss_pred             CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHH
Confidence            34568999999999999999999888622   233456778999999999999999999988752   222223 88999


Q ss_pred             HHHHcCChHHHHHHHHcCCCccc--cC--CCchHHHHH-HcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHH
Q 015680          262 EAIKCGHDGVTSLLVKEGASLNV--DD--AGSFLCIAV-ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMA  336 (403)
Q Consensus       262 ~A~~~~~~~~v~~L~~~~~~~~~--~~--~~~~l~~a~-~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~  336 (403)
                      +|+..|+.++|++|+++|++++.  .+  |.||||+|+ ..|+.+++++|++.|+       .|.||||+|+..|+.+++
T Consensus       169 ~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv  241 (376)
T 2aja_A          169 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVN  241 (376)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHH
T ss_pred             HHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHH
Confidence            99999999999999999888654  33  678999999 9999999999988764       378999999999988888


Q ss_pred             HHHHHcCCCcc-------------------------------------------------------------cCCCCCCC
Q 015680          337 KLLLEAGASVF-------------------------------------------------------------TKDRWGNT  355 (403)
Q Consensus       337 ~~Ll~~g~d~~-------------------------------------------------------------~~~~~g~t  355 (403)
                      ++|+++|++++                                                             .....+.|
T Consensus       242 ~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~  321 (376)
T 2aja_A          242 PFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANE  321 (376)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCH
T ss_pred             HHHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccH
Confidence            88887654321                                                             11234568


Q ss_pred             HHHHHHHcCCHHHHHHHHHcccccc-----ccccccccchhhhhhhhcc
Q 015680          356 PLDEGRMCGNKNLIKLLEDAKCTQL-----SEFHYCSQGMIGIAENLLL  399 (403)
Q Consensus       356 ~l~~A~~~~~~~~v~~Ll~~~~~~~-----~~~~~~~~~~~~~~~~l~~  399 (403)
                      |||+|+.+|+.+++++|+++|....     .......++.+++.+.-+.
T Consensus       322 ~L~~A~~~g~~e~v~lLl~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (376)
T 2aja_A          322 LLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDLRAVALE  370 (376)
T ss_dssp             HHHHHHHHTCTTHHHHHTTSHHHHHSCC---------------------
T ss_pred             HHHHHHHcCcHHHHHHHHcChHHHHHHHHhccccccccccccHHHHHHH
Confidence            8999999999999999998865211     1122244556666554443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=4.5e-26  Score=182.86  Aligned_cols=125  Identities=36%  Similarity=0.502  Sum_probs=91.0

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccCCCchHHHHHHcCCH
Q 015680          221 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS  300 (403)
Q Consensus       221 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~l~~a~~~~~~  300 (403)
                      ..+.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.                               
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-------------------------------   60 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHL-------------------------------   60 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH-------------------------------
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH-------------------------------
Confidence            3355666666666666666666666666666666666666666655554                               


Q ss_pred             HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcc
Q 015680          301 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK  376 (403)
Q Consensus       301 ~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  376 (403)
                      +++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.+++++|+++|
T Consensus        61 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           61 EIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            5555555556667777778888888888888888888888888888888888888888888888888888888775

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=7.5e-27  Score=192.07  Aligned_cols=142  Identities=21%  Similarity=0.269  Sum_probs=117.3

Q ss_pred             cchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCc-HHHHH
Q 015680          185 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT-PLLEA  263 (403)
Q Consensus       185 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t-~l~~A  263 (403)
                      ..+..+.++||+|+..|+.+++++|+++|++++..+..|+||||+|+ .|+.+++++|+++|++++.+|..|+| |||+|
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A   85 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA   85 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            44566789999999999999999999999999999999999999995 89999999999999999999999999 99999


Q ss_pred             HHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q 015680          264 IKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVA  327 (403)
Q Consensus       264 ~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A  327 (403)
                      +..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|+++|++++..+..|.||.+-+
T Consensus        86 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            99999999999999999998765  77999999999999999999999999999999999998754

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=1.7e-25  Score=176.61  Aligned_cols=125  Identities=46%  Similarity=0.648  Sum_probs=107.8

Q ss_pred             HhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCCh
Q 015680          190 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  269 (403)
Q Consensus       190 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  269 (403)
                      |.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~   81 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999998887776


Q ss_pred             HHHHHHHHcCCCccccCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCC
Q 015680          270 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  345 (403)
Q Consensus       270 ~~v~~L~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d  345 (403)
                      +++++|+++                               |++++..|..|.||||+|+..|+.+++++|+++|+|
T Consensus        82 ~~~~~Ll~~-------------------------------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           82 EVVKLLLEA-------------------------------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHT-------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHc-------------------------------CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            666666555                               445556667777777777777777777777777765

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=2.3e-28  Score=228.74  Aligned_cols=175  Identities=13%  Similarity=0.047  Sum_probs=151.3

Q ss_pred             HhhhHHHhhc-cCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCC---CcCCCCCCcHHHHHHH
Q 015680          190 LALRFNSAAY-HGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI---NIKDKFGNTPLLEAIK  265 (403)
Q Consensus       190 ~~~~l~~a~~-~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~---~~~~~~g~t~l~~A~~  265 (403)
                      +.+.+++|.. .++.+++++++++|.+.       .||||+|+..|+.+++++|++.|+..   +..+..|.||||+|+.
T Consensus        65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~  137 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE  137 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHH
Confidence            4567888777 57889999999987654       49999999999999999999998732   2344568899999999


Q ss_pred             cCChHHHHHHHHcCCC-----ccccCCCchHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCChHHHHHH-HcCcHHHHH
Q 015680          266 CGHDGVTSLLVKEGAS-----LNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS--RDYDHRTPLHVAA-SEGLYLMAK  337 (403)
Q Consensus       266 ~~~~~~v~~L~~~~~~-----~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~--~~~~g~t~Lh~A~-~~~~~~~~~  337 (403)
                      .|+.++|++|+++|++     ++..+ .||||+|+..|+.+++++|+++|++++.  .|..|.||||+|+ ..|+.++++
T Consensus       138 ~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~  216 (376)
T 2aja_A          138 NGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN  216 (376)
T ss_dssp             TTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             cCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHH
Confidence            9999999999999975     33444 7999999999999999999999999877  8888999999999 999999999


Q ss_pred             HHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccc
Q 015680          338 LLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ  379 (403)
Q Consensus       338 ~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  379 (403)
                      +|++.|+       .|.||||+|+.+|+.+++++|+++|++.
T Consensus       217 ~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~  251 (376)
T 2aja_A          217 FLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRL  251 (376)
T ss_dssp             HHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHH
T ss_pred             HHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCccc
Confidence            9999874       2889999999999999999999999854

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=1.8e-25  Score=179.39  Aligned_cols=128  Identities=33%  Similarity=0.453  Sum_probs=105.4

Q ss_pred             cchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHH
Q 015680          185 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  264 (403)
Q Consensus       185 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~  264 (403)
                      .....+.++||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            44567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHcCCCccccCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcC
Q 015680          265 KCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG  343 (403)
Q Consensus       265 ~~~~~~~v~~L~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g  343 (403)
                      ..|+.+++++|+++|+                               +++..|..|.||||+|+..|+.+++++|+++|
T Consensus        89 ~~~~~~~v~~Ll~~g~-------------------------------~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGA-------------------------------DVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHHTTC-------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHcCC-------------------------------CCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            8887777776666555                               44555556666666666666666666666654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=1.9e-26  Score=185.22  Aligned_cols=133  Identities=35%  Similarity=0.426  Sum_probs=85.2

Q ss_pred             CCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccCCCchHHH
Q 015680          214 ADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI  293 (403)
Q Consensus       214 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~l~~  293 (403)
                      +|+ .++..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++                     
T Consensus         2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~---------------------   59 (137)
T 3c5r_A            2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV---------------------   59 (137)
T ss_dssp             --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH---------------------
T ss_pred             CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHH---------------------
Confidence            444 4556666666666666666666666666666666666666666666655555555                     


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 015680          294 AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE  373 (403)
Q Consensus       294 a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  373 (403)
                                ++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|.
T Consensus        60 ----------~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~  129 (137)
T 3c5r_A           60 ----------ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE  129 (137)
T ss_dssp             ----------HHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred             ----------HHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcc
Confidence                      5555555566666777777777777777777777777777777777777777777777777777777776


Q ss_pred             Hcccc
Q 015680          374 DAKCT  378 (403)
Q Consensus       374 ~~~~~  378 (403)
                      +++..
T Consensus       130 ~~~~s  134 (137)
T 3c5r_A          130 KNESS  134 (137)
T ss_dssp             -----
T ss_pred             ccccC
Confidence            65543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=4.2e-27  Score=198.96  Aligned_cols=137  Identities=24%  Similarity=0.280  Sum_probs=109.3

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC---CCchHHHHHHc
Q 015680          221 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---AGSFLCIAVAR  297 (403)
Q Consensus       221 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~---~~~~l~~a~~~  297 (403)
                      ..|.||||+|+..|+.+++++|++ |++++.+|..|+||||+|+..|+.+++++|+++|++++..+   |.||||+|+..
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~  120 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  120 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence            456777777777777777777777 77777777777778877777777777777777777776544   56788888888


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 015680          298 GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA  375 (403)
Q Consensus       298 ~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  375 (403)
                      |+.+++++|+++|++++.+|..|+||||+|+..++.                 ..+.+||++|+..|+.+++++|.++
T Consensus       121 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          121 VRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             CcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence            888888888888888888999999999999875432                 4567899999999999999998765

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=1.1e-25  Score=180.84  Aligned_cols=128  Identities=23%  Similarity=0.313  Sum_probs=105.6

Q ss_pred             chhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHH
Q 015680          186 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  265 (403)
Q Consensus       186 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~  265 (403)
                      .+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+.
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~   85 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK   85 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHH
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             cCChHHHHHHHHcCCCccccCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCC
Q 015680          266 CGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA  344 (403)
Q Consensus       266 ~~~~~~v~~L~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~  344 (403)
                      .|+.+++++|+++                               |++++..|..|.||||+|+..+..+++++|.+++.
T Consensus        86 ~~~~~~v~~Ll~~-------------------------------ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           86 NGHVDIVKLLLSY-------------------------------GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             TTCHHHHHHHHHT-------------------------------TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             cCCHHHHHHHHHc-------------------------------CCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            8776666666555                               45556666777777777777777777766665543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=3.1e-25  Score=196.26  Aligned_cols=140  Identities=24%  Similarity=0.285  Sum_probs=101.8

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC---CCchHHHHHHc
Q 015680          221 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---AGSFLCIAVAR  297 (403)
Q Consensus       221 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~---~~~~l~~a~~~  297 (403)
                      ..|.||||+|+..|+.+++++|++ |++++.+|..|+||||+|+..|+.+++++|+++|++++..+   |.||||+|+..
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            345566666666666666666666 66666666666666666666666666666666666665543   55777777777


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccc
Q 015680          298 GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC  377 (403)
Q Consensus       298 ~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  377 (403)
                      |+.+++++|+++|++++.+|..|+||||+|+..+                 .+..+.||||+|+..|+.+++++|++++.
T Consensus       122 g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~-----------------~~~~~~~~l~~a~~~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          122 VRPEVVEALVELGADIEVEDERGLTALELAREIL-----------------KTTPKGNPMQFGRRIGLEKVINVLEGQVF  184 (244)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH-----------------TTCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH-----------------hccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence            7777778888888888888899999999998522                 22567899999999999999999998755


Q ss_pred             c
Q 015680          378 T  378 (403)
Q Consensus       378 ~  378 (403)
                      +
T Consensus       185 ~  185 (244)
T 3ui2_A          185 E  185 (244)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=3.5e-24  Score=189.52  Aligned_cols=141  Identities=23%  Similarity=0.268  Sum_probs=129.5

Q ss_pred             hhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCC-CCCCcHHHHHHH
Q 015680          187 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIK  265 (403)
Q Consensus       187 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~A~~  265 (403)
                      +.++.||||+|+..|+.+++++|++ |++++.++..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+.
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            4578999999999999999999999 99999999999999999999999999999999999999998 789999999999


Q ss_pred             cCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcC
Q 015680          266 CGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG  343 (403)
Q Consensus       266 ~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g  343 (403)
                      .|+.+++++|+++|++++..+  |.||||+|+..++                 ...+.||||+|+..|+.+++++|++++
T Consensus       121 ~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          121 YVRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence            999999999999999998765  7799999986433                 245899999999999999999999865


Q ss_pred             CC
Q 015680          344 AS  345 (403)
Q Consensus       344 ~d  345 (403)
                      .+
T Consensus       184 ~~  185 (244)
T 3ui2_A          184 FE  185 (244)
T ss_dssp             EE
T ss_pred             cc
Confidence            44

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=2.8e-24  Score=195.82  Aligned_cols=138  Identities=18%  Similarity=0.089  Sum_probs=105.0

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCCc------CCCCCCcHHHHHHHc---CChHHHHHHHHcCCCccccC--CCchH
Q 015680          223 GRSPLHLATSRGYEDITLFLIQKGVDINI------KDKFGNTPLLEAIKC---GHDGVTSLLVKEGASLNVDD--AGSFL  291 (403)
Q Consensus       223 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~------~~~~g~t~l~~A~~~---~~~~~v~~L~~~~~~~~~~~--~~~~l  291 (403)
                      ..++|+.|+..|+.+.++.|++.|++++.      .+..|+||||+|+..   |+.+++++|+++|++++..+  |.|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            44678888888888888888888888876      577788888888876   77888888888888777654  66888


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCH
Q 015680          292 CIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK  366 (403)
Q Consensus       292 ~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~  366 (403)
                      |+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++      .|.||||+|+.+|+.
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            888888888888888888888888888888888888888888888888887765      577888888887764

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=8.2e-24  Score=178.66  Aligned_cols=138  Identities=24%  Similarity=0.290  Sum_probs=127.7

Q ss_pred             hhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCC-CCCCcHHHHHHH
Q 015680          187 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIK  265 (403)
Q Consensus       187 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~A~~  265 (403)
                      +.++.||||+|+..|+.+++++|++ +++++..+..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            5678999999999999999999999 99999999999999999999999999999999999999998 889999999999


Q ss_pred             cCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHc
Q 015680          266 CGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA  342 (403)
Q Consensus       266 ~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~  342 (403)
                      .|+.+++++|+++|++++..+  |.||+|+|+..++.                 ..+.+||++|+..|+.+++++|.++
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence            999999999999999998765  77999999986542                 3468999999999999999999764

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=3.5e-24  Score=168.63  Aligned_cols=115  Identities=31%  Similarity=0.311  Sum_probs=77.2

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccCCCchHHHHHHcCCH
Q 015680          221 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS  300 (403)
Q Consensus       221 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~l~~a~~~~~~  300 (403)
                      ..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|                               +.
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~-------------------------------~~   53 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCG-------------------------------QL   53 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTT-------------------------------CH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcC-------------------------------CH
Confidence            34455666666666666666666655555555555555555555554                               45


Q ss_pred             HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCH
Q 015680          301 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK  366 (403)
Q Consensus       301 ~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~  366 (403)
                      +++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|...+..
T Consensus        54 ~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~  119 (123)
T 3aaa_C           54 EILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIK  119 (123)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHH
T ss_pred             HHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHH
Confidence            555555556667777777888888888888888888888888888888888888888888443333

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=1.8e-24  Score=188.52  Aligned_cols=130  Identities=22%  Similarity=0.272  Sum_probs=75.2

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHc-CCCccccC--CCchHHHHHH
Q 015680          220 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKE-GASLNVDD--AGSFLCIAVA  296 (403)
Q Consensus       220 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~-~~~~~~~~--~~~~l~~a~~  296 (403)
                      +..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++ |++++..+  |.||||+|+.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            55677888888888888888888888888888888888888888887777777777665 55444332  3344444444


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccC
Q 015680          297 RGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK  349 (403)
Q Consensus       297 ~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~  349 (403)
                      .|+.+++++|+++|++++.+|..|.||||+|+..++.++++.|+..|++....
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~  202 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLS  202 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC------------
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhcc
Confidence            44444444444444444445555555555555555555555555554444333

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=7.9e-24  Score=192.86  Aligned_cols=138  Identities=23%  Similarity=0.209  Sum_probs=122.4

Q ss_pred             HhhhHHHhhccCCHHHHHHHHHcCCCccc------cCCCCCcHHHHHHHc---CcHHHHHHHHhcCCCCCcCCCCCCcHH
Q 015680          190 LALRFNSAAYHGDLYQLKGLIRAGADLNK------TDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIKDKFGNTPL  260 (403)
Q Consensus       190 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~------~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~g~t~l  260 (403)
                      ..++|+.|+..|+.+.++.+++.|++++.      .+..|.||||+|+..   |+.+++++|+++|++++.+|..|+|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            34679999999999999999999999987      588999999999997   899999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcH
Q 015680          261 LEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLY  333 (403)
Q Consensus       261 ~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~  333 (403)
                      |+|+..|+.+++++|+++|++++..|  |.||||+|+..|+.+++++|++.|++      .|.||||+|+..|+.
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            99999999999999999999998876  77999999999999999999999876      589999999998863

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=4.2e-24  Score=180.54  Aligned_cols=136  Identities=16%  Similarity=0.065  Sum_probs=118.2

Q ss_pred             hhHhhhHHHhhccCCH----HHHHHHHHcCCCccccCCCCCcHHHHHHHcCc------HHHHHHHHhcCCCCCcCCCCCC
Q 015680          188 AELALRFNSAAYHGDL----YQLKGLIRAGADLNKTDYDGRSPLHLATSRGY------EDITLFLIQKGVDINIKDKFGN  257 (403)
Q Consensus       188 ~~~~~~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~------~~~~~~Ll~~~~~~~~~~~~g~  257 (403)
                      ..|.||||+|+.+|+.    +++++|+++|++++.++..|+||||+|+..++      .+++++|+++|+++|.+|..|+
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~  115 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK  115 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence            6789999999999975    59999999999999999999999999999886      6889999999999999999999


Q ss_pred             -cHHHHHHHcCChHHHHHHHHcCCCccccCCCchHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCChHHHHHHHcCcHHH
Q 015680          258 -TPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS-NGVDPNSRDYDHRTPLHVAASEGLYLM  335 (403)
Q Consensus       258 -t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~Lh~A~~~~~~~~  335 (403)
                       ||||+|+..+..+                          .++.+++++|++ .|++++.+|..|.||||+|+..|+.++
T Consensus       116 ttpLh~A~~~~~~~--------------------------~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~  169 (186)
T 3t8k_A          116 IVVFKNIFNYFVDE--------------------------NEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIA  169 (186)
T ss_dssp             BCTTGGGGGCCSCH--------------------------HHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHH
T ss_pred             chHHHHHHHcCCCh--------------------------hhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHH
Confidence             9999999855421                          123467888888 899999999999999999999999999


Q ss_pred             HHHHHHcCCCcccC
Q 015680          336 AKLLLEAGASVFTK  349 (403)
Q Consensus       336 ~~~Ll~~g~d~~~~  349 (403)
                      +++|..+..+.+.+
T Consensus       170 v~~L~~~~~~~~~~  183 (186)
T 3t8k_A          170 LKMMEDYIKKYNLK  183 (186)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99998875544443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=1.4e-23  Score=165.12  Aligned_cols=97  Identities=39%  Similarity=0.527  Sum_probs=85.1

Q ss_pred             hhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHc
Q 015680          187 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  266 (403)
Q Consensus       187 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~  266 (403)
                      ...+.++||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CChHHHHHHHHcCCCcc
Q 015680          267 GHDGVTSLLVKEGASLN  283 (403)
Q Consensus       267 ~~~~~v~~L~~~~~~~~  283 (403)
                      |+.+++++|+++|++++
T Consensus        84 ~~~~~v~~Ll~~ga~~~  100 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKT  100 (123)
T ss_dssp             TCHHHHHHHHHTTCCTT
T ss_pred             CCHHHHHHHHHcCCCCC
Confidence            87777766666554433

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=4.6e-22  Score=179.11  Aligned_cols=127  Identities=21%  Similarity=0.183  Sum_probs=118.9

Q ss_pred             CCcHHHHHHHcCChHHHHHHHHcCCCccc--------cCCCchHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCChHH
Q 015680          256 GNTPLLEAIKCGHDGVTSLLVKEGASLNV--------DDAGSFLCIAVAR---GDSDLLKRVLSNGVDPNSRDYDHRTPL  324 (403)
Q Consensus       256 g~t~l~~A~~~~~~~~v~~L~~~~~~~~~--------~~~~~~l~~a~~~---~~~~~v~~Ll~~~~~~~~~~~~g~t~L  324 (403)
                      ..++|+.|+..|+.+.++.+++.|.+++.        .+|.||||+|+..   |+.+++++|+++|++++.+|..|+|||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL  209 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH
Confidence            44789999999999999999999998653        3478999999999   899999999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcccccccc
Q 015680          325 HVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE  382 (403)
Q Consensus       325 h~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~  382 (403)
                      |+|+..|+.+++++|+++|+|++.+|..|.||||+|+..|+.+++++|+++|++....
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~  267 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNS  267 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999986554

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=6.6e-24  Score=184.97  Aligned_cols=130  Identities=21%  Similarity=0.219  Sum_probs=114.3

Q ss_pred             CCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHH
Q 015680          252 KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSN-GVDPNSRDYDHRTPLHVAA  328 (403)
Q Consensus       252 ~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~Lh~A~  328 (403)
                      .+..|.||||+|+..|+.+++++|++.|++++..+  |.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence            35678999999999999999999999999998655  77999999999999999999998 9999999999999999999


Q ss_pred             HcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccc
Q 015680          329 SEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS  381 (403)
Q Consensus       329 ~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~  381 (403)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..++.++++.|+++++....
T Consensus       149 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~  201 (222)
T 3ehr_A          149 WKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL  201 (222)
T ss_dssp             HHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------
T ss_pred             HcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhc
Confidence            99999999999999999999999999999999999999999999999997653

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.4e-22  Score=151.07  Aligned_cols=93  Identities=40%  Similarity=0.565  Sum_probs=87.0

Q ss_pred             CCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCC
Q 015680          286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN  365 (403)
Q Consensus       286 ~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~  365 (403)
                      +|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcccc
Q 015680          366 KNLIKLLEDAKCT  378 (403)
Q Consensus       366 ~~~v~~Ll~~~~~  378 (403)
                      .+++++|+++|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999975

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=6e-22  Score=184.58  Aligned_cols=126  Identities=26%  Similarity=0.237  Sum_probs=101.2

Q ss_pred             CCCCcHHHHHHHc-CChHHHHHHHHcCCCccccC----CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q 015680          254 KFGNTPLLEAIKC-GHDGVTSLLVKEGASLNVDD----AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA  328 (403)
Q Consensus       254 ~~g~t~l~~A~~~-~~~~~v~~L~~~~~~~~~~~----~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~  328 (403)
                      ..+.|+||.|+.. |+.++++.|+++|++++..+    +.||||+|+..|+.+++++|+++|++++..|..|+||||+|+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~  276 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT  276 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            3456788888887 88888888888888777654    568888888888888888888888888888888888888888


Q ss_pred             HcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccc
Q 015680          329 SEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ  379 (403)
Q Consensus       329 ~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  379 (403)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++++...
T Consensus       277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~  327 (368)
T 3jue_A          277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE  327 (368)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred             HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc
Confidence            888888888888888888888888888888888888888888888877543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=5.6e-22  Score=184.80  Aligned_cols=143  Identities=24%  Similarity=0.211  Sum_probs=101.3

Q ss_pred             CCCcHHHHHHHc-CcHHHHHHHHhcCCCCCcCC--CCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHH
Q 015680          222 DGRSPLHLATSR-GYEDITLFLIQKGVDINIKD--KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVA  296 (403)
Q Consensus       222 ~g~t~L~~A~~~-~~~~~~~~Ll~~~~~~~~~~--~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~  296 (403)
                      .+.|+||.|+.. |+++++++|++.|++++..+  ..|.||||+|+..|+.+++++|+++|++++..+  |.||||+|+.
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI  277 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            445788888887 88888888888888888777  678888888888888888888888888777655  5688888888


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcC---CCcccCCCCCCCHHHHHHHcC
Q 015680          297 RGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG---ASVFTKDRWGNTPLDEGRMCG  364 (403)
Q Consensus       297 ~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g---~d~~~~~~~g~t~l~~A~~~~  364 (403)
                      .|+.+++++|+++|++++..|.+|.||||+|+..|+.+++++|+..+   ++....+..+.|+++++....
T Consensus       278 ~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             cCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            88888888888888899999999999999999999999999998765   334455566788888777654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.87  E-value=3e-21  Score=173.79  Aligned_cols=123  Identities=19%  Similarity=0.132  Sum_probs=89.1

Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcCCCC------CcCCCCCCcHHHHHHHc---CChHHHHHHHHcCCCccccC--CCchHH
Q 015680          224 RSPLHLATSRGYEDITLFLIQKGVDI------NIKDKFGNTPLLEAIKC---GHDGVTSLLVKEGASLNVDD--AGSFLC  292 (403)
Q Consensus       224 ~t~L~~A~~~~~~~~~~~Ll~~~~~~------~~~~~~g~t~l~~A~~~---~~~~~v~~L~~~~~~~~~~~--~~~~l~  292 (403)
                      .++|+.|+..|+.+.++.+++.|+++      +..|..|.||||+|+..   |+.+++++|+++|++++..+  |.||||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence            35666666666666666666666663      33356666677766666   56666666666666666544  556777


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCc
Q 015680          293 IAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV  346 (403)
Q Consensus       293 ~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~  346 (403)
                      +|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            777777777777778888888888888999999999999999999999888754

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.85  E-value=5.1e-21  Score=142.49  Aligned_cols=92  Identities=42%  Similarity=0.600  Sum_probs=69.8

Q ss_pred             HhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCCh
Q 015680          190 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  269 (403)
Q Consensus       190 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  269 (403)
                      |.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            56777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHcCCC
Q 015680          270 GVTSLLVKEGAS  281 (403)
Q Consensus       270 ~~v~~L~~~~~~  281 (403)
                      +++++|+++|++
T Consensus        82 ~~~~~Ll~~ga~   93 (93)
T 1n0q_A           82 EVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCC
Confidence            777777777653

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=4.4e-21  Score=148.81  Aligned_cols=105  Identities=33%  Similarity=0.448  Sum_probs=63.6

Q ss_pred             CCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 015680          253 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASE  330 (403)
Q Consensus       253 ~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~  330 (403)
                      |..|+||||+|+..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~   85 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKN   85 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHC
Confidence            3334444444444444444444444443333322  33444444444555555556666667777788888888888888


Q ss_pred             CcHHHHHHHHHcCCCcccCCCCCCCHH
Q 015680          331 GLYLMAKLLLEAGASVFTKDRWGNTPL  357 (403)
Q Consensus       331 ~~~~~~~~Ll~~g~d~~~~~~~g~t~l  357 (403)
                      |+.+++++|+++|++++.++..|.||-
T Consensus        86 ~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           86 GHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CCHHHHHHHHHcCCCCCcCCccccccc
Confidence            888888888888888888888888774

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*

Probab=99.84  E-value=1.1e-20  Score=155.89  Aligned_cols=158  Identities=22%  Similarity=0.311  Sum_probs=135.4

Q ss_pred             CCchhhHhhhccccceeeeeeeecChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCe
Q 015680            2 RPGPAVARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQ   81 (403)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~   81 (403)
                      |.+-.-|+...+....+.....+..++.+.....+.+++++.++|..++++++..+...+..+.|++|++|+++|++.+.
T Consensus         2 rr~~v~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~   81 (161)
T 3idb_B            2 RRASVCAEAYNPDEEEDDAESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDN   81 (161)
T ss_dssp             CCCCEECCCCCTTC--------CCCCCCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCE
T ss_pred             CceeEEeccCCccchhcccCCcccCCCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcE
Confidence            45555666776666655555556777777777788899999999999999999999999999999999999999999999


Q ss_pred             EEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHH
Q 015680           82 LYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLT  160 (403)
Q Consensus        82 ~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~  160 (403)
                      +|+|++|.|+++. ..+|++.++..+.+|++||+.+++.+.++.++++|.++|+++.++++.|..++..+|...+.++.
T Consensus        82 ~y~i~~G~v~~~~-~~~g~~~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~  159 (161)
T 3idb_B           82 FYVIDRGTFDIYV-KCDGVGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYE  159 (161)
T ss_dssp             EEEEEESEEEEEE-EETTEEEEEEEEESCCEECGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC--
T ss_pred             EEEEEeCEEEEEE-cCCCCeEEEEEcCCCCEechHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHh
Confidence            9999999999998 88999999999999999999999999999999999999999999999999999999988766543

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}

Probab=99.83  E-value=1.4e-20  Score=160.90  Aligned_cols=150  Identities=19%  Similarity=0.342  Sum_probs=139.7

Q ss_pred             ccccceeeeeeeecChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEE
Q 015680           12 GRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLE   91 (403)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~   91 (403)
                      ...+|.++|+.||..++.++....+.++++++|+|..++++++..+...+..+.|++|++|+++|++.+.+|||.+|.|+
T Consensus        45 ~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~  124 (198)
T 2ptm_A           45 KMFDERHIFREVSESIRQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVD  124 (198)
T ss_dssp             CCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEE
T ss_pred             cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEE
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCeeEeeeecCCCcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680           92 EVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus        92 ~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      ++.  .+|+  ++..+.+|++||+.+++.+.++.++++|.++|+++.++++.|..++..+|.....++..+..+
T Consensus       125 ~~~--~~g~--~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~r  194 (198)
T 2ptm_A          125 IIM--SDGV--IATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRR  194 (198)
T ss_dssp             EEC--TTSC--EEEEECTTCEESCHHHHHSSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTC
T ss_pred             EEe--cCCe--EEEEecCCCEechHHHcCCCccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence            986  4565  788999999999999999999999999999999999999999999999999988877766553

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}

Probab=99.83  E-value=7.6e-20  Score=150.57  Aligned_cols=144  Identities=22%  Similarity=0.282  Sum_probs=125.4

Q ss_pred             ccceeeeeeeecChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEE
Q 015680           14 KEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEV   93 (403)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~   93 (403)
                      ..++++|+.+|..++.++...++.+.+++.++|..++++++..+...+..+.|++|++|+++|++.+.+|+|++|.|+++
T Consensus         3 ~~~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~   82 (160)
T 4f8a_A            3 HMTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVI   82 (160)
T ss_dssp             ------------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEE
T ss_pred             CchHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEE
Confidence            45667999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eecCCCCeeEeeeecCCCcccccccccC--CCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHh
Q 015680           94 GVGEDGSEETVSQLQPNSSFGEVSILCN--IPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNL  162 (403)
Q Consensus        94 ~~~~~g~~~~~~~~~~G~~~g~~~ll~~--~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~l  162 (403)
                      .     ++.++..+.+|++||+.+++.+  .++.++++|.++|+++.++++.|.+++..+|.....++..+
T Consensus        83 ~-----~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l  148 (160)
T 4f8a_A           83 Q-----DDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL  148 (160)
T ss_dssp             E-----TTEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred             E-----CCEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence            7     3468899999999999999888  68999999999999999999999999999999988887776

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.82  E-value=1.3e-20  Score=146.11  Aligned_cols=106  Identities=32%  Similarity=0.478  Sum_probs=84.0

Q ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHH
Q 015680          218 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAV  295 (403)
Q Consensus       218 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~  295 (403)
                      .+|..|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+  |.||||+|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            456778888888888888888888888888888888888888888888888888888888888777654  568888888


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCChH
Q 015680          296 ARGDSDLLKRVLSNGVDPNSRDYDHRTP  323 (403)
Q Consensus       296 ~~~~~~~v~~Ll~~~~~~~~~~~~g~t~  323 (403)
                      ..|+.+++++|+++|++++..+..|.||
T Consensus        84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             TTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            8888888888888888888777777776

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}

Probab=99.80  E-value=3.8e-19  Score=150.39  Aligned_cols=138  Identities=15%  Similarity=0.181  Sum_probs=127.4

Q ss_pred             hhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeee
Q 015680           27 PVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQ  106 (403)
Q Consensus        27 ~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~  106 (403)
                      ++.+.......+.+++.++|..++++++..+...+..+.|++|++|+++|++.+.+|+|++|.|+++..+.+|++.++..
T Consensus        28 ~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~  107 (187)
T 3gyd_A           28 GGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAK  107 (187)
T ss_dssp             EEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEE
T ss_pred             CccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEE
Confidence            33455666778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhh
Q 015680          107 LQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLE  164 (403)
Q Consensus       107 ~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~  164 (403)
                      +.+|++||+.+++.+.++.++++|.++|+++.++.+.|..++..+|.....++..+.+
T Consensus       108 ~~~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~  165 (187)
T 3gyd_A          108 VGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQ  165 (187)
T ss_dssp             EETTCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             ccCCCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998877744433

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*

Probab=99.80  E-value=7.8e-20  Score=156.68  Aligned_cols=148  Identities=24%  Similarity=0.369  Sum_probs=136.4

Q ss_pred             ccccceeeeeeeecChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEE
Q 015680           12 GRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLE   91 (403)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~   91 (403)
                      ...+|.++|..||..++.++....+.++++++|+|..++++++..+...+..+.|++|++|+++|++++.+|||.+|.|+
T Consensus        46 ~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~  125 (202)
T 3bpz_A           46 KMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS  125 (202)
T ss_dssp             CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEE
T ss_pred             cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEE
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCeeEeeeecCCCcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhh
Q 015680           92 EVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLE  164 (403)
Q Consensus        92 ~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~  164 (403)
                      ++.  .+|++.   .+.+|++||+.+++.+.++.++++|.++|+++.++++.|..++..+|.....+...+..
T Consensus       126 v~~--~~g~~~---~l~~G~~fGe~~~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~  193 (202)
T 3bpz_A          126 VLT--KGNKEM---KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAID  193 (202)
T ss_dssp             EEC--TTSCCE---EEETTCEECHHHHHHCSBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred             EEE--CCCeEE---EEcCCCEeccHHHhcCCCcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            974  566654   57999999999999999999999999999999999999999999999988877766654

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=99.80  E-value=1.9e-19  Score=145.02  Aligned_cols=129  Identities=18%  Similarity=0.261  Sum_probs=114.6

Q ss_pred             HHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeE---eeeecCCCcc
Q 015680           37 MPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEET---VSQLQPNSSF  113 (403)
Q Consensus        37 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~---~~~~~~G~~~  113 (403)
                      .+.+++.|+|..++++++..+...+..+.|++|++|+++|++.+.+|+|++|.|++++.+.+|++.+   +..+.+|++|
T Consensus         5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f   84 (142)
T 3mdp_A            5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF   84 (142)
T ss_dssp             TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred             HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence            3578899999999999999999999999999999999999999999999999999999889999998   9999999999


Q ss_pred             cccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          114 GEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       114 g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      |+.+++.+.++.++++|.++|+++.++.+.|..++..+|.....++..+.+.
T Consensus        85 G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~  136 (142)
T 3mdp_A           85 GVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAA  136 (142)
T ss_dssp             CGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             chHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998887777653

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B

Probab=99.79  E-value=1.7e-19  Score=155.78  Aligned_cols=149  Identities=19%  Similarity=0.312  Sum_probs=137.1

Q ss_pred             ccceeeeeeeecChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEE
Q 015680           14 KEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEV   93 (403)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~   93 (403)
                      .++.++|+.||..++.++...++...+ ++|+|..++++++..+...+..+.|+||++|+++|++.+.+|||.+|.|+++
T Consensus        52 ~~~~~il~~Lp~~L~~~i~~~~~~~l~-~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~  130 (212)
T 3ukn_A           52 IDVSELLKDFPDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVL  130 (212)
T ss_dssp             CCCCCTTTTSCHHHHHHHHTTCCCGGG-GSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEE
T ss_pred             CCHHHHHHHcCHHHHHHHHHHHHHHHH-hcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEE
Confidence            457889999999999999988887766 7999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCeeEeeeecCCCcccccccccCC--CcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhcccc
Q 015680           94 GVGEDGSEETVSQLQPNSSFGEVSILCNI--PQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEGKES  168 (403)
Q Consensus        94 ~~~~~g~~~~~~~~~~G~~~g~~~ll~~~--~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~~~~  168 (403)
                      .   +|  .++..+.+|++||+.+++.+.  ++.++++|.++|+++.++++.|.+++..+|.....++..+...-..
T Consensus       131 ~---~~--~~~~~l~~G~~fGe~~~~~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~  202 (212)
T 3ukn_A          131 K---DN--TVLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTY  202 (212)
T ss_dssp             S---SS--CEEEEECTTCEEECSCCSSSSCCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEE
T ss_pred             E---CC--eEEEEecCCCCcCcHHhccCCCCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcc
Confidence            6   33  678999999999999999988  8999999999999999999999999999999999988888765443

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=99.79  E-value=8.7e-19  Score=142.27  Aligned_cols=129  Identities=19%  Similarity=0.271  Sum_probs=121.7

Q ss_pred             HHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCccccc
Q 015680           37 MPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV  116 (403)
Q Consensus        37 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~  116 (403)
                      .+.+++.++|..++++++..+...+..+.|++|++|+++|++.+.+|+|++|.|++++.+.+|++.++..+.+|++||+.
T Consensus         4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~   83 (149)
T 2pqq_A            4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL   83 (149)
T ss_dssp             GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred             HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence            45789999999999999999999999999999999999999999999999999999998899999999999999999999


Q ss_pred             ccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          117 SILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       117 ~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      +++.+.++..+++|.++|+++.++.+.|..++..+|.....++..+..+
T Consensus        84 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~  132 (149)
T 2pqq_A           84 SLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVARR  132 (149)
T ss_dssp             GGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHH
T ss_pred             HhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            9999889999999999999999999999999999999888877776653

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}

Probab=99.78  E-value=1.2e-18  Score=142.23  Aligned_cols=131  Identities=15%  Similarity=0.239  Sum_probs=118.7

Q ss_pred             HhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCccc
Q 015680           35 LYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG  114 (403)
Q Consensus        35 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g  114 (403)
                      ...+.+++.++|..++++++..+...+..+.|++|++|+++|++.+.+|+|++|.|++++.+.+|++.++..+.+|++||
T Consensus         9 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G   88 (154)
T 2z69_A            9 VHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFA   88 (154)
T ss_dssp             HHHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEES
T ss_pred             hHHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeec
Confidence            34568899999999999999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             ccccccCCC-cceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          115 EVSILCNIP-QPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       115 ~~~ll~~~~-~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      +.+++.+.+ +..+++|.++|+++.++.+.|..++..+|.....++..+..+
T Consensus        89 ~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~r  140 (154)
T 2z69_A           89 EAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTR  140 (154)
T ss_dssp             GGGGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHhhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHH
Confidence            999999988 999999999999999999999999999999988888877664

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=9.9e-19  Score=134.35  Aligned_cols=87  Identities=39%  Similarity=0.601  Sum_probs=80.1

Q ss_pred             CCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCC
Q 015680          286 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN  365 (403)
Q Consensus       286 ~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~  365 (403)
                      ++.|+||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus        23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~  102 (110)
T 2zgd_A           23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN  102 (110)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCC
Confidence            45688888888888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 015680          366 KNLIKLL  372 (403)
Q Consensus       366 ~~~v~~L  372 (403)
                      .+++++|
T Consensus       103 ~~~~~~L  109 (110)
T 2zgd_A          103 EDLAEIL  109 (110)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999987

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*

Probab=99.77  E-value=1.7e-18  Score=138.92  Aligned_cols=131  Identities=24%  Similarity=0.298  Sum_probs=117.0

Q ss_pred             eeecChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCe
Q 015680           22 WIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSE  101 (403)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~  101 (403)
                      .+|..++++.....+.+++++.++|..++++++..+...+..+.|++|++|+++|++.+.+|+|++|.|++++   +|  
T Consensus         7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~g--   81 (139)
T 3ocp_A            7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EG--   81 (139)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE---TT--
T ss_pred             cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE---CC--
Confidence            5778888888888889999999999999999999999999999999999999999999999999999999976   44  


Q ss_pred             eEeeeecCCCcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchH
Q 015680          102 ETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRK  157 (403)
Q Consensus       102 ~~~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~  157 (403)
                      .++..+.+|++||+.+++.+.++.++++|.++|+++.++++.|.+++..++...+.
T Consensus        82 ~~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~  137 (139)
T 3ocp_A           82 VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT  137 (139)
T ss_dssp             EEEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred             EEEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence            47899999999999999999999999999999999999999999999988876544

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}

Probab=99.76  E-value=2.5e-18  Score=146.19  Aligned_cols=128  Identities=17%  Similarity=0.161  Sum_probs=119.2

Q ss_pred             HHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCccccc
Q 015680           37 MPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV  116 (403)
Q Consensus        37 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~  116 (403)
                      ..+++.+++|..|++++++.+......+.|++|++|+.+|++++.+|+|.+|.|++++.+.+|++.++.++.+|++||+.
T Consensus         6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~   85 (194)
T 3dn7_A            6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDY   85 (194)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeeh
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             -ccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhh
Q 015680          117 -SILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLE  164 (403)
Q Consensus       117 -~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~  164 (403)
                       +++.+.++.++++|.++|+++.++.+.|.+++..+|.....+...+..
T Consensus        86 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~  134 (194)
T 3dn7_A           86 MAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQK  134 (194)
T ss_dssp             HHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred             HHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHH
Confidence             678888999999999999999999999999999999988777666554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.75  E-value=6.3e-18  Score=129.82  Aligned_cols=94  Identities=29%  Similarity=0.498  Sum_probs=81.5

Q ss_pred             ecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHH
Q 015680          182 HIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL  261 (403)
Q Consensus       182 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~  261 (403)
                      .....+.++.++||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD   95 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence            33455677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHH
Q 015680          262 EAIKCGHDGVTSLL  275 (403)
Q Consensus       262 ~A~~~~~~~~v~~L  275 (403)
                      +|+..|+.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            99999999998876

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}

Probab=99.75  E-value=5.2e-18  Score=148.47  Aligned_cols=129  Identities=20%  Similarity=0.279  Sum_probs=120.9

Q ss_pred             HHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCccccc
Q 015680           37 MPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV  116 (403)
Q Consensus        37 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~  116 (403)
                      .+++++.|+|..++++++..+...+..+.|++|++|+.+|++.+.+|+|++|.|++++.+.+|++.++.++.+|++||+.
T Consensus         5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~   84 (231)
T 3e97_A            5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET   84 (231)
T ss_dssp             HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred             HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          117 SILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       117 ~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      +++.+.++..+++|.++|+++.++.+.|..++..+|.....++..+...
T Consensus        85 ~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  133 (231)
T 3e97_A           85 AVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARR  133 (231)
T ss_dssp             TTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888887777664

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}

Probab=99.75  E-value=5.7e-18  Score=146.56  Aligned_cols=126  Identities=21%  Similarity=0.325  Sum_probs=117.6

Q ss_pred             hhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccc
Q 015680           40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSIL  119 (403)
Q Consensus        40 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll  119 (403)
                      ++++|+|..++++++..+...++.+.|++|++|+.+|++.+.+|+|.+|.|+++..+.+|++.++..+.+|++||+.+++
T Consensus         1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~   80 (216)
T 4ev0_A            1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL   80 (216)
T ss_dssp             ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred             CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          120 CNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       120 ~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      .+.++.++++|.++|+++.++.+.|..++..+|.....++..+...
T Consensus        81 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  126 (216)
T 4ev0_A           81 DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARR  126 (216)
T ss_dssp             HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888877777664

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}

Probab=99.74  E-value=1e-17  Score=145.40  Aligned_cols=128  Identities=15%  Similarity=0.111  Sum_probs=119.8

Q ss_pred             HhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCc--ccc
Q 015680           38 PYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSS--FGE  115 (403)
Q Consensus        38 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~--~g~  115 (403)
                      ++++++|+|..+++++++.+...+..+.|++|++|+.+|++.+.+|+|++|.|++++.+.+|++.++..+.+|++  ||+
T Consensus         3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~   82 (220)
T 3dv8_A            3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA   82 (220)
T ss_dssp             --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred             chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence            578899999999999999999999999999999999999999999999999999999999999999999999999  799


Q ss_pred             cccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          116 VSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       116 ~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      .+++.+.++..+++|.++|+++.++.+.|.+++..+|.....++..+...
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  132 (220)
T 3dv8_A           83 SCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATR  132 (220)
T ss_dssp             GGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999888877666653

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*

Probab=99.74  E-value=4.4e-18  Score=149.55  Aligned_cols=132  Identities=17%  Similarity=0.210  Sum_probs=124.5

Q ss_pred             HHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcc
Q 015680           34 TLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSF  113 (403)
Q Consensus        34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~  113 (403)
                      ....+++++.++|..++++++..+...+..+.|++|++|+.+|++.+.+|+|++|.|+++..+.+|++.++.++.+|++|
T Consensus         7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~   86 (237)
T 3fx3_A            7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESF   86 (237)
T ss_dssp             HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEE
T ss_pred             HHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEe
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          114 GEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       114 g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      |+.+++.+.++.++++|.++|+++.++.+.|..++..+|.....++..+...
T Consensus        87 G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  138 (237)
T 3fx3_A           87 GEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGH  138 (237)
T ss_dssp             CHHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             chHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888887777664

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*

Probab=99.74  E-value=1.3e-17  Score=136.21  Aligned_cols=128  Identities=24%  Similarity=0.339  Sum_probs=114.7

Q ss_pred             cChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEe
Q 015680           25 LYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETV  104 (403)
Q Consensus        25 ~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~  104 (403)
                      ..++.........+++++.++|..++++++..+...+..+.|++|++|+.+|++.+.+|+|++|.|+++.   +|  ..+
T Consensus        25 ~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~~--~~~   99 (154)
T 3pna_A           25 VIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NN--EWA   99 (154)
T ss_dssp             CCCCCHHHHHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE---TT--EEE
T ss_pred             cCCCCHHHHHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE---CC--EEE
Confidence            4455555566778899999999999999999999999999999999999999999999999999999997   33  367


Q ss_pred             eeecCCCcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchH
Q 015680          105 SQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRK  157 (403)
Q Consensus       105 ~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~  157 (403)
                      ..+.+|++||+.+++.+.++.++++|.++|+++.++.+.|..++..++.....
T Consensus       100 ~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~  152 (154)
T 3pna_A          100 TSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRK  152 (154)
T ss_dssp             EEECTTCEECCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC--
T ss_pred             EEecCCCEeeehHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhh
Confidence            88999999999999999999999999999999999999999999988776544

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2

Probab=99.73  E-value=1.5e-17  Score=145.64  Aligned_cols=131  Identities=18%  Similarity=0.138  Sum_probs=122.5

Q ss_pred             HhHHhhhccCCCCCCCHHHHHHHHHH--hheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCc
Q 015680           35 LYMPYIEKVSLFKGCSSEFINQIVIR--LHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSS  112 (403)
Q Consensus        35 ~~~~~l~~~~~f~~l~~~~~~~l~~~--~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~  112 (403)
                      .....+++.++|..++++++..+...  ...+.|++|++|+++|++.+.+|+|++|.|++++.+.+|++.++..+.+|++
T Consensus        15 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~   94 (232)
T 1zyb_A           15 TMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYL   94 (232)
T ss_dssp             HHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEE
T ss_pred             HHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCe
Confidence            34568899999999999999999998  9999999999999999999999999999999999899999999999999999


Q ss_pred             ccccccccCCC-cceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          113 FGEVSILCNIP-QPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       113 ~g~~~ll~~~~-~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      ||+.+++.+.+ +.++++|.++|+++.++.+.|..++..+|.....++..+...
T Consensus        95 fG~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~  148 (232)
T 1zyb_A           95 IEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNR  148 (232)
T ss_dssp             ECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHH
T ss_pred             eeehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            99999999887 899999999999999999999999999998888877776664

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=99.73  E-value=8.2e-18  Score=159.78  Aligned_cols=150  Identities=23%  Similarity=0.313  Sum_probs=128.4

Q ss_pred             hHhhhccccceeeeeeeecChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEe
Q 015680            7 VARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVC   86 (403)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~   86 (403)
                      -|+..+|....+.-...+..+|++-......+.+++.++|..|+++++..+...+..+.|++|++|+++|+.++.+|+|+
T Consensus       114 ~ae~~~~~~~~~~~~~~~~~~ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~  193 (416)
T 3tnp_B          114 CAEAYNPDEEEDDAESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVID  193 (416)
T ss_dssp             ECCCCCCC--------CCCCCCCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEE
T ss_pred             eccccCCcccccccccccCCCCCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEE
Confidence            34444554443333344566777777778889999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEeecCCCCeeEeeeecCCCcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchH
Q 015680           87 HGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRK  157 (403)
Q Consensus        87 ~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~  157 (403)
                      +|.|++++ ..+|++.++..+.+|++||+.+++.+.++.++++|.++|++|.++++.|..++...+.....
T Consensus       194 sG~v~v~~-~~~G~~~~v~~l~~G~~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~  263 (416)
T 3tnp_B          194 RGTFDIYV-KCDGVGRCVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRK  263 (416)
T ss_dssp             ECEEEEEE-ECSSCEEEEEEEESCCEECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSS
T ss_pred             eeEEEEEE-ecCCCEEEEEEecCCCEEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHH
Confidence            99999998 77899999999999999999999999999999999999999999999999999988776544

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*

Probab=99.73  E-value=4.3e-18  Score=148.53  Aligned_cols=129  Identities=20%  Similarity=0.314  Sum_probs=121.6

Q ss_pred             HHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCccccc
Q 015680           37 MPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV  116 (403)
Q Consensus        37 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~  116 (403)
                      .+++++.++|..++++++..+...+..+.|++|++|+++|++.+.+|+|++|.|++++.+.+|++.++..+.+|++||+.
T Consensus         5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~   84 (227)
T 3d0s_A            5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL   84 (227)
T ss_dssp             HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred             HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          117 SILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       117 ~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      +++.+.++.++++|.++|+++.++.+.|..++..+|.....++..+...
T Consensus        85 ~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  133 (227)
T 3d0s_A           85 SIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARR  133 (227)
T ss_dssp             HHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988888777766653

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}

Probab=99.72  E-value=3.1e-17  Score=143.29  Aligned_cols=129  Identities=12%  Similarity=0.159  Sum_probs=110.0

Q ss_pred             HHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCccccc
Q 015680           37 MPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV  116 (403)
Q Consensus        37 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~  116 (403)
                      ...++..++|..|++++++.+...+..+.|++|++|+.+|++.+.+|+|++|.|++++.+.+|++.++.++.+|++||+.
T Consensus        10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~   89 (230)
T 3iwz_A           10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM   89 (230)
T ss_dssp             ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred             hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCC-CcceeEEEeccceeeeechHhHHHHHHHH-----hhcchHHHHHhhhc
Q 015680          117 SILCNI-PQPYTVRICELSRLLRIDKQSFTSILEIY-----FCDGRKVLTNLLEG  165 (403)
Q Consensus       117 ~ll~~~-~~~~~~~a~~~~~~~~i~~~~~~~l~~~~-----~~~~~~ll~~ll~~  165 (403)
                      +++.+. ++.++++|.++|+++.++.+.|.+++..+     |.....++..+...
T Consensus        90 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~  144 (230)
T 3iwz_A           90 GLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKR  144 (230)
T ss_dssp             GGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHH
Confidence            998875 78899999999999999999999999999     88877777766653

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}

Probab=99.72  E-value=6.3e-18  Score=147.47  Aligned_cols=130  Identities=15%  Similarity=0.237  Sum_probs=122.4

Q ss_pred             hHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccc
Q 015680           36 YMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE  115 (403)
Q Consensus        36 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~  115 (403)
                      ..+++++.++|..++++++..+...+..+.|++|++|+.+|++++.+|+|++|.|+++..+.+|++.++..+.+|++||+
T Consensus         7 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~   86 (227)
T 3dkw_A            7 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAE   86 (227)
T ss_dssp             SHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESC
T ss_pred             HHHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeee
Confidence            35688999999999999999999999999999999999999999999999999999999889999999999999999999


Q ss_pred             cccccCCC-cceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          116 VSILCNIP-QPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       116 ~~ll~~~~-~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      .+++.+.+ +.++++|.++|+++.++.+.|..++..+|.....++..+...
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  137 (227)
T 3dkw_A           87 AMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTR  137 (227)
T ss_dssp             TTTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            99999998 999999999999999999999999999998888777776664

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2

Probab=99.71  E-value=1.6e-17  Score=132.90  Aligned_cols=118  Identities=17%  Similarity=0.300  Sum_probs=107.6

Q ss_pred             HhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEee--eecCCCcccc
Q 015680           38 PYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVS--QLQPNSSFGE  115 (403)
Q Consensus        38 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~--~~~~G~~~g~  115 (403)
                      +++++.++|..++++++..+...+..+.|++|++|+++|++.+.+|+|++|.|+++ ...+|++.++.  .+.+|++||+
T Consensus         6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~~g~~~~~~~~~l~~G~~fGe   84 (137)
T 1wgp_A            6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRSGFYNRSLLKEGDFCGD   84 (137)
T ss_dssp             CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCSSCSSSSSCEEECCTTCBSST
T ss_pred             HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcCCCcceeeeeeeecCCCEecH
Confidence            46889999999999999999999999999999999999999999999999999965 57788988887  9999999999


Q ss_pred             ccc---ccCCC------cceeEEEeccceeeeechHhHHHHHHHHhhcch
Q 015680          116 VSI---LCNIP------QPYTVRICELSRLLRIDKQSFTSILEIYFCDGR  156 (403)
Q Consensus       116 ~~l---l~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~  156 (403)
                      .++   +.+.+      +.++++|.++|+++.++.+.|.+++..+|....
T Consensus        85 ~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~  134 (137)
T 1wgp_A           85 ELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP  134 (137)
T ss_dssp             HHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred             HHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence            985   77664      578999999999999999999999999887654

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=99.71  E-value=1.6e-16  Score=144.56  Aligned_cols=146  Identities=22%  Similarity=0.253  Sum_probs=126.5

Q ss_pred             ccceeeeeeeecChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEE
Q 015680           14 KEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEV   93 (403)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~   93 (403)
                      ++-......+|..+|++.......+.+++.++|..|+++++..+...+..+.|++|++|+++|++++.+|+|++|.|+++
T Consensus        15 ~~~~~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~   94 (299)
T 3shr_A           15 IEGRGSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVT   94 (299)
T ss_dssp             -------CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEE
T ss_pred             cccccccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEE
Confidence            33444566789999999888899999999999999999999999999999999999999999999999999999999997


Q ss_pred             eecCCCCeeEeeeecCCCcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhh
Q 015680           94 GVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLE  164 (403)
Q Consensus        94 ~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~  164 (403)
                      +   +|  ..+..+.+|++||+.+++.+.++.++++|.++|+++.++++.|..++...+.........++.
T Consensus        95 ~---~g--~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~  160 (299)
T 3shr_A           95 K---EG--VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLK  160 (299)
T ss_dssp             E---TT--EEEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             E---CC--EEEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHh
Confidence            6   33  578899999999999999999999999999999999999999999999987665554444443

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A

Probab=99.70  E-value=4.4e-17  Score=130.40  Aligned_cols=124  Identities=22%  Similarity=0.309  Sum_probs=114.3

Q ss_pred             hHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccc
Q 015680           36 YMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE  115 (403)
Q Consensus        36 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~  115 (403)
                      ..+++++.++|..++++++..+...+..+.|++|++|+++|++.+.+|+|++|.|+++..+       ...+.+|++||+
T Consensus         9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-------~~~~~~G~~~G~   81 (138)
T 1vp6_A            9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------PVELGPGAFFGE   81 (138)
T ss_dssp             HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS-------CEEECTTCEECH
T ss_pred             HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC-------cceECCCCEeee
Confidence            4578999999999999999999999999999999999999999999999999999998643       247899999999


Q ss_pred             cccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhcc
Q 015680          116 VSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEGK  166 (403)
Q Consensus       116 ~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~~  166 (403)
                      .+++.+.++..+++|.++|+++.++.+.|..++..+|.....++..+.++.
T Consensus        82 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~  132 (138)
T 1vp6_A           82 MALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR  132 (138)
T ss_dssp             HHHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_pred             hHhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999888888777653

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2

Probab=99.70  E-value=3.3e-17  Score=143.40  Aligned_cols=124  Identities=15%  Similarity=0.164  Sum_probs=113.2

Q ss_pred             ccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccC
Q 015680           42 KVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCN  121 (403)
Q Consensus        42 ~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~  121 (403)
                      ..|+|..++++++..+......+.|++|++|+++|++.+.+|+|.+|.|++++.+.+|++.++..+.+|++||+.+++.+
T Consensus        14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~   93 (232)
T 2gau_A           14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAE   93 (232)
T ss_dssp             SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHT
T ss_pred             ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCC
Confidence            57899999999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             CCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          122 IPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       122 ~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      .++.++++|.++|+++.++.+.|..++..+|.....++..+...
T Consensus        94 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  137 (232)
T 2gau_A           94 ETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKE  137 (232)
T ss_dssp             SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999988887777664

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*

Probab=99.69  E-value=9.5e-17  Score=148.43  Aligned_cols=128  Identities=20%  Similarity=0.328  Sum_probs=120.4

Q ss_pred             HHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCccccc
Q 015680           37 MPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV  116 (403)
Q Consensus        37 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~  116 (403)
                      .+.++++|+|..|+++++..+...++.+.|++|++|+++|++++.+|+|++|.|++++.+.+|++ ++..+.+|++||+.
T Consensus        12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~G~~fGe~   90 (333)
T 4ava_A           12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-IIARALPGMIVGEI   90 (333)
T ss_dssp             HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-EEEEECTTCEESHH
T ss_pred             HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-EEEEecCCCEeeHH
Confidence            47889999999999999999999999999999999999999999999999999999998888887 89999999999999


Q ss_pred             ccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhcc
Q 015680          117 SILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEGK  166 (403)
Q Consensus       117 ~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~~  166 (403)
                      +++.+.++.++++|.++|+++.++++.|..++ .+|.....++..+...-
T Consensus        91 ~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~  139 (333)
T 4ava_A           91 ALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRL  139 (333)
T ss_dssp             HHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHH
T ss_pred             HhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999 89998888877776643

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...

Probab=99.69  E-value=1.4e-16  Score=137.01  Aligned_cols=122  Identities=16%  Similarity=0.211  Sum_probs=111.1

Q ss_pred             CCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccCC-
Q 015680           44 SLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNI-  122 (403)
Q Consensus        44 ~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~-  122 (403)
                      ++++.++++++..+...+..+.|++|++|+.+|++.+.+|+|++|.|++++.+.+|++.++.++.+|++||+.+++.+. 
T Consensus         2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~   81 (210)
T 3ryp_A            2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ   81 (210)
T ss_dssp             -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred             cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence            4667899999999999999999999999999999999999999999999999999999999999999999999999887 


Q ss_pred             CcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          123 PQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       123 ~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      ++.++++|.++|+++.++.+.|..++..+|.....++..+...
T Consensus        82 ~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  124 (210)
T 3ryp_A           82 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARR  124 (210)
T ss_dssp             BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred             CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999888877776664

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2

Probab=99.67  E-value=4.2e-16  Score=133.77  Aligned_cols=117  Identities=15%  Similarity=0.217  Sum_probs=108.6

Q ss_pred             CCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccCC----Cc
Q 015680           49 CSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNI----PQ  124 (403)
Q Consensus        49 l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~----~~  124 (403)
                      |++++++.+...+..+.|++|++|+.+|++.+.+|+|.+|.|++++.+.+|++.++.++.+|++||+.+++.+.    ++
T Consensus         1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~   80 (207)
T 2oz6_A            1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQER   80 (207)
T ss_dssp             CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBC
T ss_pred             CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCc
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999888    89


Q ss_pred             ceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          125 PYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       125 ~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      .++++|.++|+++.++.+.|..++..+|.....++..+...
T Consensus        81 ~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  121 (207)
T 2oz6_A           81 SAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADR  121 (207)
T ss_dssp             CSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888777766654

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}

Probab=99.66  E-value=7.2e-17  Score=128.53  Aligned_cols=116  Identities=19%  Similarity=0.255  Sum_probs=104.0

Q ss_pred             HHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeC-CCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCC
Q 015680           33 QTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFL-PGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNS  111 (403)
Q Consensus        33 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~-~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~  111 (403)
                      .....+++++.++|..++++++..+...+..+.|+ +|++|+++|++.+.+|+|++|.|+++.  .+|++   ..+.+|+
T Consensus        11 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~~g~~---~~l~~G~   85 (134)
T 2d93_A           11 IEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH--PDGKV---ENLFMGN   85 (134)
T ss_dssp             HHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC--SSSCE---EEECTTC
T ss_pred             HHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc--CCCcE---EEecCCC
Confidence            33556789999999999999999999999999999 999999999999999999999999985  56665   4578999


Q ss_pred             cccccccccCCCcceeE-EEeccceeeeechHhHHHHHHHHhh
Q 015680          112 SFGEVSILCNIPQPYTV-RICELSRLLRIDKQSFTSILEIYFC  153 (403)
Q Consensus       112 ~~g~~~ll~~~~~~~~~-~a~~~~~~~~i~~~~~~~l~~~~~~  153 (403)
                      +||+.+++.+.++.+++ +|.++|+++.++.+.|..++.....
T Consensus        86 ~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~  128 (134)
T 2d93_A           86 SFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEK  128 (134)
T ss_dssp             EESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred             ccChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence            99999999998888888 9999999999999999998765543

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=99.66  E-value=3.8e-16  Score=141.51  Aligned_cols=136  Identities=24%  Similarity=0.347  Sum_probs=123.4

Q ss_pred             ecChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeE
Q 015680           24 RLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEET  103 (403)
Q Consensus        24 ~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~  103 (403)
                      +..+|+.-......+++++.++|..|+++++..+...+..+.|++|++|+++|++++.+|+|++|.|+++.   +|  ..
T Consensus        25 ~~~~ks~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~g--~~   99 (291)
T 2qcs_B           25 KVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NN--EW   99 (291)
T ss_dssp             CCCCCCHHHHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE---TT--EE
T ss_pred             CCCCCCHHHHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE---CC--eE
Confidence            46667666666778899999999999999999999999999999999999999999999999999999997   44  56


Q ss_pred             eeeecCCCcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhh
Q 015680          104 VSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLE  164 (403)
Q Consensus       104 ~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~  164 (403)
                      +..+.+|++||+.+++.+.++.++++|.++|+++.++++.|..++..++.....++..++.
T Consensus       100 ~~~l~~G~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~  160 (291)
T 2qcs_B          100 ATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLS  160 (291)
T ss_dssp             EEEECTTCEECGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEcCCCCccchHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHh
Confidence            8999999999999999999999999999999999999999999999998887776666555

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=99.65  E-value=7.8e-16  Score=149.10  Aligned_cols=142  Identities=23%  Similarity=0.248  Sum_probs=129.4

Q ss_pred             eecChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCC--
Q 015680           23 IRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGS--  100 (403)
Q Consensus        23 ~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~--  100 (403)
                      .++.+|++.......+.+++.++|..|+++++..+...+..+.|++|++|+++|++.+.+|+|++|.|++++.+.+|+  
T Consensus        27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~  106 (469)
T 1o7f_A           27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD  106 (469)
T ss_dssp             SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred             CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence            356677777777888999999999999999999999999999999999999999999999999999999999888885  


Q ss_pred             eeEeeeecCCCcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          101 EETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       101 ~~~~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      +.++..+.+|++||+.+ +.+.++.++++|.++|+++.++++.|..++..++.....++..+...
T Consensus       107 ~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~~~~~~  170 (469)
T 1o7f_A          107 AVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLAPPYGV  170 (469)
T ss_dssp             CEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSCTTTSC
T ss_pred             ceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            48899999999999999 99999999999999999999999999999999999877776555543

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=99.65  E-value=4.9e-16  Score=146.04  Aligned_cols=137  Identities=26%  Similarity=0.348  Sum_probs=123.1

Q ss_pred             ecChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeE
Q 015680           24 RLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEET  103 (403)
Q Consensus        24 ~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~  103 (403)
                      +..+|+.-......+++++.++|..|+++++..+...+..+.|++|++|+++|++++.+|+|++|.|++++   +|  ..
T Consensus       116 ~~~~ks~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~---~~--~~  190 (381)
T 4din_B          116 KVIPKDYKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV---NG--EW  190 (381)
T ss_dssp             CCCCCCHHHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE---TT--EE
T ss_pred             CCCCCCHHHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE---CC--eE
Confidence            35666666666778899999999999999999999999999999999999999999999999999999997   33  36


Q ss_pred             eeeecCCCcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          104 VSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       104 ~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      +..+.+|++||+.+++.+.++.++++|.++|++|.++++.|..++...+.....++..++..
T Consensus       191 v~~l~~G~~fGe~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~  252 (381)
T 4din_B          191 VTNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSK  252 (381)
T ss_dssp             EEEEESSCCBCGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeCCCCCEEEchHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhh
Confidence            78899999999999999999999999999999999999999999999988877766655553

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=99.65  E-value=2.7e-16  Score=143.11  Aligned_cols=134  Identities=20%  Similarity=0.275  Sum_probs=125.7

Q ss_pred             HHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeec-CCCCeeEeeeecCCC
Q 015680           33 QTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVG-EDGSEETVSQLQPNS  111 (403)
Q Consensus        33 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~-~~g~~~~~~~~~~G~  111 (403)
                      ...+..++++.++|..++++++..+...+..+.|++|++|+++|++++.+|+|.+|.|++++.. .+|++.++..+.+|+
T Consensus       152 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~  231 (299)
T 3shr_A          152 HTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGD  231 (299)
T ss_dssp             HHHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTC
T ss_pred             HHHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCC
Confidence            3456778999999999999999999999999999999999999999999999999999999877 689999999999999


Q ss_pred             cccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhcc
Q 015680          112 SFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEGK  166 (403)
Q Consensus       112 ~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~~  166 (403)
                      +||+.+++.+.++.++++|.++|+++.++++.|..++..+|.....++..+.++.
T Consensus       232 ~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~  286 (299)
T 3shr_A          232 WFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKA  286 (299)
T ss_dssp             EECGGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred             EeChHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999999999888887753

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2

Probab=99.64  E-value=3e-16  Score=135.38  Aligned_cols=124  Identities=19%  Similarity=0.196  Sum_probs=108.1

Q ss_pred             ccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccC
Q 015680           42 KVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCN  121 (403)
Q Consensus        42 ~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~  121 (403)
                      .-|+|+..+++++..+......+.|++|++|+.+|++.+.+|+|.+|.|++++.+.+|++.++.++.+|++||+.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~   82 (213)
T 1o5l_A            3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSS   82 (213)
T ss_dssp             ----------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSS
T ss_pred             ccccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcC
Confidence            35788899999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             C-CcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          122 I-PQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       122 ~-~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      . ++..+++|.++|+++.++.+.|..++..+|.....++..+..+
T Consensus        83 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~  127 (213)
T 1o5l_A           83 EPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEH  127 (213)
T ss_dssp             SCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            6 8999999999999999999999999999999988887777664

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}

Probab=99.64  E-value=9.1e-16  Score=136.62  Aligned_cols=121  Identities=16%  Similarity=0.216  Sum_probs=109.1

Q ss_pred             CCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccCC-C
Q 015680           45 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNI-P  123 (403)
Q Consensus        45 ~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~-~  123 (403)
                      +...++++++..+...+..+.|++|++|+.+|++++.+|+|++|.|++++.+.+|++.++.++.+|++||+.+++.+. +
T Consensus        53 ~~~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~  132 (260)
T 3kcc_A           53 LGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQE  132 (260)
T ss_dssp             ------CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCB
T ss_pred             HcCCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCC
Confidence            345689999999999999999999999999999999999999999999999999999999999999999999999888 8


Q ss_pred             cceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          124 QPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       124 ~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      +.++++|.++|+++.++.+.|.+++..+|.....++..+...
T Consensus       133 ~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~  174 (260)
T 3kcc_A          133 RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARR  174 (260)
T ss_dssp             CCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred             CceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888777766654

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=99.61  E-value=6.7e-15  Score=133.25  Aligned_cols=132  Identities=20%  Similarity=0.282  Sum_probs=119.6

Q ss_pred             HHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCC-CeeEeeeecCCC
Q 015680           33 QTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDG-SEETVSQLQPNS  111 (403)
Q Consensus        33 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g-~~~~~~~~~~G~  111 (403)
                      ......++.+.++|..++.+++..+...+..+.|++|++|+++|++.+.+|+|.+|.|++++...+| ++..+..+.+|+
T Consensus       152 ~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~  231 (291)
T 2qcs_B          152 RKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSD  231 (291)
T ss_dssp             HHHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTC
T ss_pred             HHHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCC
Confidence            4455677889999999999999999999999999999999999999999999999999999876655 567899999999


Q ss_pred             cccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhh
Q 015680          112 SFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLE  164 (403)
Q Consensus       112 ~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~  164 (403)
                      +||+.+++.+.++.++++|.++|+++.++++.|..++..+|......+..+..
T Consensus       232 ~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~~  284 (291)
T 2qcs_B          232 YFGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYNS  284 (291)
T ss_dssp             EECSGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHHH
T ss_pred             EecHHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998877776665544

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*

Probab=99.61  E-value=4.2e-16  Score=135.22  Aligned_cols=120  Identities=13%  Similarity=0.158  Sum_probs=112.0

Q ss_pred             HhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccc
Q 015680           38 PYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVS  117 (403)
Q Consensus        38 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~  117 (403)
                      .++++.|+|..++++++..+...+..+.|++|++|+.+|++.+.+|+|.+|.|+++ .+.+|++.++.++.+|++||+  
T Consensus         4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~~G~--   80 (220)
T 2fmy_A            4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAYEDKEFTLAILEAGDIFCT--   80 (220)
T ss_dssp             TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EECSSCEEEEEEEETTCEEES--
T ss_pred             hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEeCC--
Confidence            46788999999999999999999999999999999999999999999999999995 788999999999999999998  


Q ss_pred             cccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          118 ILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       118 ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                           ++.++++|.++|+++.++.+.|..++..+|.....++..+...
T Consensus        81 -----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~  123 (220)
T 2fmy_A           81 -----HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDL  123 (220)
T ss_dssp             -----CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred             -----ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence                 7789999999999999999999999999999888877776654

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A

Probab=99.61  E-value=1.3e-15  Score=134.87  Aligned_cols=124  Identities=16%  Similarity=0.108  Sum_probs=113.6

Q ss_pred             hhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCccccccc
Q 015680           39 YIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSI  118 (403)
Q Consensus        39 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~l  118 (403)
                      ++.....+..++++++..+...+..+.|++|++|+.+|++++.+|+|.+|.|++++.+.+|++.++.++.+|++||+  +
T Consensus        10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~   87 (250)
T 3e6c_C           10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--L   87 (250)
T ss_dssp             CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--C
T ss_pred             hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--e
Confidence            34445556899999999999999999999999999999999999999999999999999999999999999999999  7


Q ss_pred             ccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          119 LCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       119 l~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      +.+. +.++++|.++|+++.++.+.|..++..+|.....++..+...
T Consensus        88 l~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~  133 (250)
T 3e6c_C           88 YPTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTK  133 (250)
T ss_dssp             SCCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred             cCCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            7777 999999999999999999999999999999888877777664

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1

Probab=99.60  E-value=4.6e-16  Score=135.17  Aligned_cols=119  Identities=12%  Similarity=0.080  Sum_probs=110.6

Q ss_pred             hhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCccccccc
Q 015680           39 YIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSI  118 (403)
Q Consensus        39 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~l  118 (403)
                      ++++.++|..++++++..+...+..+.|++|++|+.+|++.+.+|+|.+|.|+++ .+.+|++.++..+.+|++||    
T Consensus         1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG----   75 (222)
T 1ft9_A            1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFC----   75 (222)
T ss_dssp             -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEE----
T ss_pred             CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEec----
Confidence            3678999999999999999999999999999999999999999999999999997 78899999999999999999    


Q ss_pred             ccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          119 LCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       119 l~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                         .++.++++|.++|+++.++.+.|..++..+|.....++..+...
T Consensus        76 ---~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  119 (222)
T 1ft9_A           76 ---MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRA  119 (222)
T ss_dssp             ---SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             ---CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence               57889999999999999999999999999999988887777664

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.59  E-value=1.6e-15  Score=133.74  Aligned_cols=123  Identities=27%  Similarity=0.333  Sum_probs=109.7

Q ss_pred             hHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccc
Q 015680           36 YMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE  115 (403)
Q Consensus        36 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~  115 (403)
                      ..+.+++.++|..++++++..+...+..+.|++|++|+++|++++.+|+|++|.|+++.   +|+  .+..+.+|++||+
T Consensus         5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~---~~~--~~~~~~~g~~fGe   79 (246)
T 3of1_A            5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV---NDN--KVNSSGPGSSFGE   79 (246)
T ss_dssp             HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES---TTS--CCEEECTTCEECH
T ss_pred             HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE---CCE--EEEecCCCCeeeh
Confidence            45788999999999999999999999999999999999999999999999999999986   343  3689999999999


Q ss_pred             cccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhh
Q 015680          116 VSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLL  163 (403)
Q Consensus       116 ~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll  163 (403)
                      .+++.+.++.++++|.++|+++.++++.|..++...+.........++
T Consensus        80 ~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l  127 (246)
T 3of1_A           80 LALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLL  127 (246)
T ss_dssp             HHHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHH
T ss_pred             hHHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887765554444333

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A

Probab=99.57  E-value=1.6e-14  Score=126.81  Aligned_cols=117  Identities=13%  Similarity=0.152  Sum_probs=105.2

Q ss_pred             CCCHHHHHHHHH--HhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccCCCc-
Q 015680           48 GCSSEFINQIVI--RLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQ-  124 (403)
Q Consensus        48 ~l~~~~~~~l~~--~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~~-  124 (403)
                      +++++++..+..  ....++|++|++|+.+|++.+.+|+|++|.|++++.+.+|++.++.++ +|++||+.+++.+.+. 
T Consensus         3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~~   81 (238)
T 2bgc_A            3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETSV   81 (238)
T ss_dssp             -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCBS
T ss_pred             CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCcC
Confidence            578899999885  479999999999999999999999999999999999999999999999 9999999999988764 


Q ss_pred             -ceeEEEe-ccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          125 -PYTVRIC-ELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       125 -~~~~~a~-~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                       ..++.|. ++|+++.++.+.|..++..+|.....++..+...
T Consensus        82 ~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  124 (238)
T 2bgc_A           82 GYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQ  124 (238)
T ss_dssp             CCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             cceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence             6778888 5999999999999999999999888887777654

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=99.57  E-value=6e-15  Score=138.61  Aligned_cols=132  Identities=21%  Similarity=0.288  Sum_probs=118.6

Q ss_pred             HHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCC-eeEeeeecCC
Q 015680           32 SQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGS-EETVSQLQPN  110 (403)
Q Consensus        32 ~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~-~~~~~~~~~G  110 (403)
                      .+..+..++.+.++|..++++++..+...+..+.|++|++|+++|++++.+|+|.+|.|++++...+|+ +..+..+.+|
T Consensus       242 ~~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~G  321 (381)
T 4din_B          242 KRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPS  321 (381)
T ss_dssp             HHHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTT
T ss_pred             HHHHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCC
Confidence            344566788999999999999999999999999999999999999999999999999999998766554 5679999999


Q ss_pred             CcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhh
Q 015680          111 SSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLL  163 (403)
Q Consensus       111 ~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll  163 (403)
                      ++||+.+++.+.++.++++|.++|+++.++++.|..++..++....+.+..+-
T Consensus       322 d~fGe~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~  374 (381)
T 4din_B          322 DYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYN  374 (381)
T ss_dssp             CEECTTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHH
T ss_pred             CEechHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988877666655443

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=99.56  E-value=8.2e-15  Score=139.10  Aligned_cols=129  Identities=19%  Similarity=0.301  Sum_probs=110.0

Q ss_pred             hHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCC------CCeeEeeeecC
Q 015680           36 YMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGED------GSEETVSQLQP  109 (403)
Q Consensus        36 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~------g~~~~~~~~~~  109 (403)
                      +..++.++++|..++++++..+...+..+.|++|++|+++|++++.+|+|.+|.|++++...+      |++.++..+.+
T Consensus       265 ~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~  344 (416)
T 3tnp_B          265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFR  344 (416)
T ss_dssp             SSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECT
T ss_pred             HHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCC
Confidence            345678899999999999999999999999999999999999999999999999999987665      88999999999


Q ss_pred             CCcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhh
Q 015680          110 NSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLE  164 (403)
Q Consensus       110 G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~  164 (403)
                      |++||+.+++.+.++.++++|.++|+++.|+++.|..++..++......+..+.+
T Consensus       345 G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~~  399 (416)
T 3tnp_B          345 GQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEE  399 (416)
T ss_dssp             TCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC------
T ss_pred             CCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888776665554443

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.54  E-value=1.5e-14  Score=127.42  Aligned_cols=119  Identities=19%  Similarity=0.404  Sum_probs=108.5

Q ss_pred             HHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCC
Q 015680           32 SQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNS  111 (403)
Q Consensus        32 ~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~  111 (403)
                      .+..+..++++.++|..++++++..+...+..+.|++|++|+++|++++.+|+|.+|.|++++...+    .+..+.+|+
T Consensus       119 ~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~----~~~~l~~g~  194 (246)
T 3of1_A          119 KRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG----VINKLKDHD  194 (246)
T ss_dssp             HHHHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE----EEEEEETTC
T ss_pred             HHHHHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc----eEEEcCCCC
Confidence            3445667889999999999999999999999999999999999999999999999999999974322    789999999


Q ss_pred             cccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhc
Q 015680          112 SFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCD  154 (403)
Q Consensus       112 ~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~  154 (403)
                      +||+.+++.+.++.++++|.++|+++.++++.|..++...++.
T Consensus       195 ~fGe~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~  237 (246)
T 3of1_A          195 YFGEVALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDV  237 (246)
T ss_dssp             EECHHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHH
T ss_pred             cccHHHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHH
Confidence            9999999999999999999999999999999999998877654

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*

Probab=99.54  E-value=2e-14  Score=126.55  Aligned_cols=115  Identities=23%  Similarity=0.251  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHhh---eeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccCCCc--c
Q 015680           51 SEFINQIVIRLH---EEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQ--P  125 (403)
Q Consensus        51 ~~~~~~l~~~~~---~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~~--~  125 (403)
                      ++.++.+.....   .+.|++|++|+.+|++.+.+|+|++|.|++++.+.+|++.++.++.+|++||+.+++.+.+.  .
T Consensus        30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~  109 (243)
T 3la7_A           30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRF  109 (243)
T ss_dssp             HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCC
T ss_pred             HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcce
Confidence            666777777777   99999999999999999999999999999999999999999999999999999999988764  4


Q ss_pred             eeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          126 YTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       126 ~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      ++++|.++|+++.++.+.|.+++..+|.....++..+...
T Consensus       110 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~  149 (243)
T 3la7_A          110 YHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSR  149 (243)
T ss_dssp             EEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             EEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999888877766653

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=99.48  E-value=3e-13  Score=130.90  Aligned_cols=121  Identities=19%  Similarity=0.299  Sum_probs=106.8

Q ss_pred             HhHHhhhccCCCCCCCHHHHHHHHHHhhe-eeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcc
Q 015680           35 LYMPYIEKVSLFKGCSSEFINQIVIRLHE-EFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSF  113 (403)
Q Consensus        35 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~-~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~  113 (403)
                      ...+.+++.++|..++++++..+...+.. +.|++|++|+++|++++.+|||++|.|++++.   |+ .++..+.+|++|
T Consensus       334 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~---~~-~~~~~l~~G~~f  409 (469)
T 1o7f_A          334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY---GK-GVVCTLHEGDDF  409 (469)
T ss_dssp             HHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEET---TT-EEEEEEETTCEE
T ss_pred             HHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEc---CC-eeEEEecCCCEE
Confidence            45678999999999999999999999974 59999999999999999999999999999972   33 378999999999


Q ss_pred             cccccccCCCcceeEEEec-cceeeeechHhHHHHHHHHhhcchHHH
Q 015680          114 GEVSILCNIPQPYTVRICE-LSRLLRIDKQSFTSILEIYFCDGRKVL  159 (403)
Q Consensus       114 g~~~ll~~~~~~~~~~a~~-~~~~~~i~~~~~~~l~~~~~~~~~~ll  159 (403)
                      |+.+++.+.++.++++|.+ +|+++.++++.|..++..++.....+.
T Consensus       410 Ge~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~  456 (469)
T 1o7f_A          410 GKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLK  456 (469)
T ss_dssp             CGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-----
T ss_pred             EEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHH
Confidence            9999999999999999998 799999999999999999988766643

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}

Probab=99.47  E-value=4.4e-14  Score=141.66  Aligned_cols=143  Identities=18%  Similarity=0.247  Sum_probs=118.1

Q ss_pred             ccccceeeeeeeecChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhh-eeeeCCCCeEEecCCccCeEEEEeeeEE
Q 015680           12 GRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLH-EEFFLPGEVIMEQGNVIDQLYFVCHGVL   90 (403)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~-~~~~~~ge~i~~~g~~~~~~~~v~~G~v   90 (403)
                      +|.+.-+-+-..++..+.........+.+++.++|..++++++..+...+. .+.|++|++|+++||+++.+|+|++|.|
T Consensus         6 ~p~~~~r~iL~k~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V   85 (694)
T 3cf6_E            6 FPDAHMRMILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSV   85 (694)
T ss_dssp             -----CHHHHHSCGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEE
T ss_pred             CcHHHHHHHHcCChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEE
Confidence            333333333333444454444445678899999999999999999999997 7899999999999999999999999999


Q ss_pred             EEEeecCCCCeeEeeeecCCCcccccccccCCCcceeEEEec-cceeeeechHhHHHHHHHHhhcchHH
Q 015680           91 EEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICE-LSRLLRIDKQSFTSILEIYFCDGRKV  158 (403)
Q Consensus        91 ~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~~~~~~~a~~-~~~~~~i~~~~~~~l~~~~~~~~~~l  158 (403)
                      ++++.   |+ .++.++.+|++||+.+++.+.++.++++|.+ +|+++.++++.|..++..++.....+
T Consensus        86 ~v~~~---g~-~il~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~~~l  150 (694)
T 3cf6_E           86 NVVIY---GK-GVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRL  150 (694)
T ss_dssp             EEEET---TT-EEEEEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCCEEE
T ss_pred             EEEEe---CC-EEEEEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHHHHH
Confidence            99973   34 6899999999999999999999999999999 59999999999999999988876554

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=99.47  E-value=2.9e-13  Score=142.61  Aligned_cols=142  Identities=23%  Similarity=0.303  Sum_probs=122.2

Q ss_pred             ccceeeeeeeecCh--hhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEE
Q 015680           14 KEEVRYLLWIRLYP--VRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLE   91 (403)
Q Consensus        14 ~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~   91 (403)
                      .++++.+..|...|  |++--.+..+..|+.+.+|+.+++.++..++..+....|++|++||++||.++.+|+|++|.|.
T Consensus        16 ~~~~~~i~~L~K~p~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~   95 (999)
T 4f7z_A           16 QSSAEWIACLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLD   95 (999)
T ss_dssp             CCSCCHHHHHHSCSSSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEE
T ss_pred             hhhHHHHHHhcCCcccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEE
Confidence            44556666666554  3344445667789999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecC--CCCeeEeeeecCCCcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcch
Q 015680           92 EVGVGE--DGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGR  156 (403)
Q Consensus        92 ~~~~~~--~g~~~~~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~  156 (403)
                      |+....  ++.+..+..+.+|+.||+ +++++.++.++++|.++|++|++++..|+.++..+++...
T Consensus        96 V~i~~~~~~~~~~~v~~l~~G~sFGE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~  161 (999)
T 4f7z_A           96 VKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMA  161 (999)
T ss_dssp             EEECSSSCTTSCEEEEEEETTCEECG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred             EEEecCCCCCCceeEEEecCCcchhh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhChHHHH
Confidence            997543  456778899999999999 8899999999999999999999999999999988876543

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A

Probab=99.43  E-value=3.2e-13  Score=114.62  Aligned_cols=94  Identities=22%  Similarity=0.277  Sum_probs=84.7

Q ss_pred             eeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccCCCcceeEEEeccceeeeechHh
Q 015680           64 EFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQS  143 (403)
Q Consensus        64 ~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~  143 (403)
                      ++|++|++|+++|++.+.+|+|++|.|++++.+.+|++.++..+.+|++||+ +++.+.++.++++|.++|+++.++.+.
T Consensus         2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~   80 (195)
T 3b02_A            2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA   80 (195)
T ss_dssp             EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred             eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence            6899999999999999999999999999999899999999999999999999 999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchHHHHHhhh
Q 015680          144 FTSILEIYFCDGRKVLTNLLE  164 (403)
Q Consensus       144 ~~~l~~~~~~~~~~ll~~ll~  164 (403)
                      |.      |.....++..+..
T Consensus        81 ~~------p~~~~~~~~~l~~   95 (195)
T 3b02_A           81 MD------HEALHRVARNLAR   95 (195)
T ss_dssp             CC------HHHHHHHHHHHHH
T ss_pred             cC------HHHHHHHHHHHHH
Confidence            97      4554555444443

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.38  E-value=3.5e-14  Score=132.17  Aligned_cols=123  Identities=22%  Similarity=0.304  Sum_probs=1.5

Q ss_pred             hHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccc
Q 015680           36 YMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE  115 (403)
Q Consensus        36 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~  115 (403)
                      ..+.+++.++|+.+++++++.+....+.+.|+|||+|+++||+.+.+|+|.+|.++++..+       ...+.+|++||+
T Consensus       226 ~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-------~~~l~~G~~fGe  298 (355)
T 3beh_A          226 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------PVELGPGAFFGE  298 (355)
T ss_dssp             HHC-----------------------------------------------------------------------------
T ss_pred             cchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC-------eeEECCCCEEee
Confidence            3467889999999999999999999999999999999999999999999999999999743       257899999999


Q ss_pred             cccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          116 VSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       116 ~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      .+++.+.++.++++|.++|+++.++++.+.++++++|+....+.+.+.++
T Consensus       299 ~~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~r  348 (355)
T 3beh_A          299 MALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALER  348 (355)
T ss_dssp             --------------------------------------------------
T ss_pred             hHHhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988877766654

>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}

Probab=99.34  E-value=1.2e-12  Score=111.73  Aligned_cols=99  Identities=22%  Similarity=0.239  Sum_probs=84.1

Q ss_pred             HHHhheeeeCCCCeEEecCCcc--CeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccCCCcceeEEEeccce
Q 015680           58 VIRLHEEFFLPGEVIMEQGNVI--DQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSR  135 (403)
Q Consensus        58 ~~~~~~~~~~~ge~i~~~g~~~--~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~  135 (403)
                      .+.+..+.|++|++|+.+|++.  +.+|+|++|.|+++..+.+|++.++.++.+|++||+ +++.+.++..+++|.++|+
T Consensus         2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~   80 (202)
T 2zcw_A            2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDVR   80 (202)
T ss_dssp             ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCEE
T ss_pred             CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccEE
Confidence            4567889999999999999999  999999999999999999999999999999999999 8888889999999999999


Q ss_pred             eeeechHhHHHHHHHHhhcchHHHHHhhh
Q 015680          136 LLRIDKQSFTSILEIYFCDGRKVLTNLLE  164 (403)
Q Consensus       136 ~~~i~~~~~~~l~~~~~~~~~~ll~~ll~  164 (403)
                      ++.+ .+.|.      |.....++..+..
T Consensus        81 v~~i-~~~~~------p~~~~~~~~~l~~  102 (202)
T 2zcw_A           81 LEPL-PENPD------PELLKDLAQHLSQ  102 (202)
T ss_dssp             EEEC-CSSCC------HHHHHHHHHHHHH
T ss_pred             EEEE-hHhcC------HHHHHHHHHHHHH
Confidence            9999 88775      4444444444433

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=99.22  E-value=3.4e-11  Score=126.91  Aligned_cols=117  Identities=19%  Similarity=0.271  Sum_probs=102.7

Q ss_pred             HHhHHhhhccCCCCCCCHHHHHHHHHHhhe-eeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCc
Q 015680           34 TLYMPYIEKVSLFKGCSSEFINQIVIRLHE-EFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSS  112 (403)
Q Consensus        34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~-~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~  112 (403)
                      +...+.+.+++.|..|+...+..+...+.. ..+++|++|+++||..+.+|||++|.|.|++   .+ +..+..+.+|++
T Consensus       333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~---~~-~~~v~~L~~Gd~  408 (999)
T 4f7z_A          333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YG-KGVVCTLHEGDD  408 (999)
T ss_dssp             HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE---TT-TEEEEEEETTCE
T ss_pred             HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE---cC-CcceEEecCCCc
Confidence            355678999999999999999999988875 4557899999999999999999999999986   22 235788999999


Q ss_pred             ccccccccCCCcceeEEEecc-ceeeeechHhHHHHHHHHhhc
Q 015680          113 FGEVSILCNIPQPYTVRICEL-SRLLRIDKQSFTSILEIYFCD  154 (403)
Q Consensus       113 ~g~~~ll~~~~~~~~~~a~~~-~~~~~i~~~~~~~l~~~~~~~  154 (403)
                      ||+.+++++.|+.++++|.++ |++++++++.|..++......
T Consensus       409 FGElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~e~~  451 (999)
T 4f7z_A          409 FGKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRDVEAN  451 (999)
T ss_dssp             ECGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHHHHHS
T ss_pred             ccchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhHHHHh
Confidence            999999999999999999985 999999999999999876443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	403
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-35
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-28
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-25
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-09
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-26
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-24
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-24
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-21
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-17
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-19
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-16
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-18
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-05
d1cx4a1	136	b.82.3.2 (A:130-265) Regulatory subunit of Protein	3e-16
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-16
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-08
d1ne6a2	132	b.82.3.2 (A:245-376) Regulatory subunit of Protein	2e-15
d1ne6a1	136	b.82.3.2 (A:109-244) Regulatory subunit of Protein	2e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-10
d1cx4a2	147	b.82.3.2 (A:266-412) Regulatory subunit of Protein	7e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-14
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-15
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-11
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-07
d1vp6a_	133	b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo	1e-12
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-12
d1wgpa_	137	b.82.3.2 (A:) Probable cyclic nucleotide-gated ion	2e-12
d2gaua2	142	b.82.3.2 (A:10-151) Transcriptional regulator PG03	8e-12
d1o7fa2	155	b.82.3.2 (A:13-167) Regulatory domain of Epac2, do	1e-11
d1i5za2	132	b.82.3.2 (A:6-137) Catabolite gene activator prote	7e-11
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	8e-11
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-09
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-10
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-09
d1o7fa3	124	b.82.3.2 (A:322-445) Regulatory domain of Epac2, d	2e-09
d2oz6a2	134	b.82.3.2 (A:9-142) Cyclic AMP receptor-like protei	6e-09
d1zyba2	147	b.82.3.2 (A:1-147) Probable transcription regulato	6e-09
d1q3ea_	193	b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu	2e-08
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	5e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	6e-04
d2zcwa2	112	b.82.3.2 (A:6-117) Transcriptional regulator TTHA1	6e-06
d1o5la1	129	b.82.3.2 (A:1-129) CRP-like transcriptional regula	8e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-05
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (332), Expect = 3e-35
 Identities = 52/218 (23%), Positives = 84/218 (38%), Gaps = 35/218 (16%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           A++ G L  +K L++ GA  N ++    +PLH+A   G+ ++  +L+Q    +N K K  
Sbjct: 7   ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 66

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLN--------------------------------- 283
            TPL  A + GH  +  LL++  A+ N                                 
Sbjct: 67  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 126

Query: 284 -VDDAGSF-LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 341
            +   G   L +A   G   + + +L     PN+   +  TPLHVA       + KLLL 
Sbjct: 127 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 186

Query: 342 AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ 379
            G S  +    G TPL          + + L     + 
Sbjct: 187 RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 224

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (279), Expect = 6e-28
 Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 2/177 (1%)

Query: 199 YHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT 258
               +   + L++ G   N     G +PLHLA   G+ ++   L+ K  + N+ +K G T
Sbjct: 207 KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT 266

Query: 259 PLLEAIKCGHDGVTSLLVKEGASLNV--DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 316
           PL    + GH  V  +L+K G  ++       + L +A   G+  L+K +L +  D N++
Sbjct: 267 PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 326

Query: 317 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
                +PLH AA +G   +  LLL+ GAS       G TPL   +  G  ++  +L+
Sbjct: 327 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 383

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 9e-26
 Identities = 60/215 (27%), Positives = 89/215 (41%), Gaps = 10/215 (4%)

Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
            + AA +G +   + L+   A  N    +G +PLH+A      DI   L+ +G   +   
Sbjct: 136 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA 195

Query: 254 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGV 311
             G TPL  A K     V   L++ G S N +       L +A   G ++++  +LS   
Sbjct: 196 WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQA 255

Query: 312 DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 371
           + N  +    TPLH+ A EG   +A +L++ G  V    R G TPL      GN  L+K 
Sbjct: 256 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF 315

Query: 372 LEDAKCTQ-------LSEFHY-CSQGMIGIAENLL 398
           L   +           S  H    QG   I   LL
Sbjct: 316 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 350

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 7e-25
 Identities = 49/187 (26%), Positives = 72/187 (38%), Gaps = 35/187 (18%)

Query: 226 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD 285
           PLH+A+  G+  I   L+Q+G   N+ +    TPL  A + GH  V   L++  A +N  
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 62

Query: 286 DAGSF--LCIAVARGDSDLLKRVLSNGVDP------------------------------ 313
                  L  A   G ++++K +L N  +P                              
Sbjct: 63  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 122

Query: 314 ---NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 370
                      TPLHVAA  G   +A+LLLE  A      + G TPL       N +++K
Sbjct: 123 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 182

Query: 371 LLEDAKC 377
           LL     
Sbjct: 183 LLLPRGG 189

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.2 bits (225), Expect = 8e-21
 Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 2/181 (1%)

Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
            + AA  G +  +  L+   A        G +PLH+A   G   +   L+++    N   
Sbjct: 103 LHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG 162

Query: 254 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGV 311
           K G TPL  A+   +  +  LL+  G S +      +  L IA  +   ++ + +L  G 
Sbjct: 163 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 222

Query: 312 DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 371
             N+      TPLH+AA EG   M  LLL   A+    ++ G TPL      G+  +  +
Sbjct: 223 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV 282

Query: 372 L 372
           L
Sbjct: 283 L 283

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.4 bits (210), Expect = 8e-19
 Identities = 30/96 (31%), Positives = 43/96 (44%)

Query: 291 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 350
           L +A   G   ++K +L  G  PN  +    TPLH+AA  G   +AK LL+  A V  K 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 63

Query: 351 RWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYC 386
           +   TPL      G+ N++KLL +            
Sbjct: 64  KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 99

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (188), Expect = 4e-16
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 199 YHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT 258
           ++G++  +K L++  AD+N     G SPLH A  +G+ DI   L++ G   N     G T
Sbjct: 306 HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTT 365

Query: 259 PLLEAIKCGHDGVTSLL---VKEGASLNVDD 286
           PL  A + G+  VT +L     E + + V D
Sbjct: 366 PLAIAKRLGYISVTDVLKVVTDETSFVLVSD 396

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (188), Expect = 5e-16
 Identities = 38/108 (35%), Positives = 52/108 (48%), Gaps = 2/108 (1%)

Query: 258 TPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNS 315
           TPL  A   GH  +   L++ GAS NV +      L +A   G +++ K +L N    N+
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 316 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC 363
           +  D +TPLH AA  G   M KLLLE  A+       G+TPL      
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 109

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (188), Expect = 5e-16
 Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 34/162 (20%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
            A  G +     LI+ G  ++ T   G +PLH+A+  G   +  FL+Q   D+N K K G
Sbjct: 271 VAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG 330

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 316
            +PL +A + GH  + +LL                               L NG  PN  
Sbjct: 331 YSPLHQAAQQGHTDIVTLL-------------------------------LKNGASPNEV 359

Query: 317 DYDHRTPLHVAASEGLYLMAKLL---LEAGASVFTKDRWGNT 355
             D  TPL +A   G   +  +L    +  + V   D+   +
Sbjct: 360 SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 3e-09
 Identities = 20/56 (35%), Positives = 26/56 (46%)

Query: 322 TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC 377
           TPLHVA+  G   + K LL+ GAS    +    TPL      G+  + K L   K 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 57

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 8e-26
 Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 37/217 (17%)

Query: 192 LRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYED------------- 237
           L   + AY G L +LK  I A  +   +TD D R+ LH A S G+ +             
Sbjct: 5   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64

Query: 238 --------------------ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVK 277
                               I   L+ KG  +N  ++ G TPL  A       +  +L++
Sbjct: 65  DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 124

Query: 278 EGASLNVDDA--GSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLM 335
            GA+ +  D    + +  A A+G+  ++  +L      N +D +  TPLH+A  E     
Sbjct: 125 GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEE 184

Query: 336 AKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           AKLL+  GAS++ +++   TPL   +  G   ++K +
Sbjct: 185 AKLLVSQGASIYIENKEEKTPLQVAKG-GLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 6e-24
 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 3/135 (2%)

Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 268
           L+  GA +N  + +G +PLH A S+   +I + L++ G + + KD +  T +  A   G+
Sbjct: 89  LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 148

Query: 269 DGVTSLLVKEGASLNVDDA--GSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHV 326
             +  +L+   AS N+ D    + L +A      +  K ++S G      + + +TPL V
Sbjct: 149 LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 208

Query: 327 AASEGLYLMAKLLLE 341
           A   GL L+ K ++E
Sbjct: 209 AK-GGLGLILKRMVE 222

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.5 bits (244), Expect = 6e-24
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 217 NKTDYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAI----KCGHDGV 271
            +    G + L  A  +G+ ++   L+ + G D+N  D  G   L+ A+        + +
Sbjct: 142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI 201

Query: 272 TSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLS-NGVDPNSRDYDHRTPLHVAA 328
           T LL+  GA +NV        L +AV +    L++R+L    ++ N  D D +T L +A 
Sbjct: 202 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261

Query: 329 SEGLYLMAKLLLEAGASVFTKD 350
              L  +A+LL + GAS    D
Sbjct: 262 ELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 5e-20
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 207 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKFGNTPLLEAIK 265
             L+  GAD+N     G++PL LA  + +  +   L+ Q+ ++IN  D  G T LL A++
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE 262

Query: 266 CGHDGVTSLLVKEGASLNVDD 286
                +  LL K GAS +  D
Sbjct: 263 LKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (193), Expect = 4e-17
 Identities = 57/262 (21%), Positives = 93/262 (35%), Gaps = 60/262 (22%)

Query: 197 AAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 255
           A  + D+  ++ L+  GA++N + +  G +PLH A     EDI   L++ G D  ++ K 
Sbjct: 12  AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRVLSNGVDP 313
           G TP L A   G   +  L + +GA +N  D    +    A   G    LK +   G + 
Sbjct: 72  GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131

Query: 314 NSRDYDH----------RTPLHVAASEGLYLMAKL------------------------- 338
           N R               T L  AA +G   + K+                         
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 191

Query: 339 -------------LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE--- 382
                        LL+ GA V  +   G TPL       +  L++ L + +  ++++   
Sbjct: 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS 251

Query: 383 -----FHY-CSQGMIGIAENLL 398
                        +  IAE L 
Sbjct: 252 DGKTALLLAVELKLKKIAELLC 273

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (164), Expect = 3e-13
 Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 13/164 (7%)

Query: 222 DGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIKCGHDGVTSLLVK--E 278
           +    L  A      D+   L++ G ++N ++ + G TPL  A++   + +  LL++   
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 279 GASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKL 338
              L   +  +   +A   G   LLK  LS G D N  D+   T    AA  G     K 
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 339 LLEAGASVFTKDRW----------GNTPLDEGRMCGNKNLIKLL 372
           L + GA+V  + +           G T L +    G+  ++K+L
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 2e-07
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 1/107 (0%)

Query: 291 LCIAVARGDSDLLKRVLSNGVDPNSRDYDH-RTPLHVAASEGLYLMAKLLLEAGASVFTK 349
           L  AV   D DL++++L  G + N ++ +   TPLH A       + +LLL  GA    +
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68

Query: 350 DRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAEN 396
            + G TP     + G+  L+KL             Y     +  A  
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY 115

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.3 bits (225), Expect = 2e-21
 Identities = 35/184 (19%), Positives = 62/184 (33%), Gaps = 22/184 (11%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGY----EDITLFLIQKGVDINIK 252
                +L  +K L++ G++    D  G S L  A               L      + ++
Sbjct: 114 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 173

Query: 253 DKFGNTPL------------LEAIKCGHDGVTSLLVKEGASLNV---DDAGSFLCIAVAR 297
           D    T L              A K   D +   +VK+         ++  S        
Sbjct: 174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 233

Query: 298 GDSDLLKRVLSN---GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN 354
               +L+ +          N++D +  T L++AA  G   +   LL+ GA  F  ++ G 
Sbjct: 234 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL 293

Query: 355 TPLD 358
            P+D
Sbjct: 294 RPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.7 bits (195), Expect = 2e-17
 Identities = 33/201 (16%), Positives = 68/201 (33%), Gaps = 24/201 (11%)

Query: 196 SAAYHGDLYQLK-GLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
             ++   L ++         +LN   D  G +PLH  TS    ++   L++ G +    D
Sbjct: 78  HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD 137

Query: 254 KFGNTPLLEAI-------KCGHDGVTSLLVKEGASLN----------VDDAGSFLCIAVA 296
             G + L++A+           + +   L       +          +  +G   C A A
Sbjct: 138 NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAA 197

Query: 297 RGDSDLLKRVL--SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL---EAGASVFTKDR 351
           +   D+L   +         S   +  +  +    E    + + L         +  +D 
Sbjct: 198 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS 257

Query: 352 WGNTPLDEGRMCGNKNLIKLL 372
            G+T L+     GN +++  L
Sbjct: 258 NGDTCLNIAARLGNISIVDAL 278

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.2 bits (165), Expect = 2e-13
 Identities = 29/227 (12%), Positives = 69/227 (30%), Gaps = 21/227 (9%)

Query: 167 ESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYD-GRS 225
            S L++ +       +  + + +L        +         L    ++ N       + 
Sbjct: 16  SSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQ 75

Query: 226 PLHLATSRGYEDITLFLIQKGVDINIK-DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 284
             H++     +++        +++NI  D+ GNTPL       +  +   LVK G++   
Sbjct: 76  QQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY 135

Query: 285 DDAGSFLCIAVARGDSDLLKR------VLSNGVDPNSRDYDHRTPLHVAASEGLY----- 333
            D     C+  A    +          +          D  +RT LH             
Sbjct: 136 GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSA 195

Query: 334 --------LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
                   LM  ++ +    + +      +  ++       ++++ L
Sbjct: 196 AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL 242

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.0 bits (162), Expect = 4e-13
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 184 GKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI 243
            K                +   LK +I     LN  D +G + L++A   G   I   L+
Sbjct: 222 EKESKPNDKNGERKDSILENLDLKWII--ANMLNAQDSNGDTCLNIAARLGNISIVDALL 279

Query: 244 QKGVDINIKDKFGNTPLLEAI 264
             G D  I +K G  P+    
Sbjct: 280 DYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.2 bits (160), Expect = 9e-13
 Identities = 22/151 (14%), Positives = 41/151 (27%), Gaps = 34/151 (22%)

Query: 181 FHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITL 240
            H     + +     +A Y+ D+     + +    +     +  S  +       + I  
Sbjct: 181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILE 240

Query: 241 FLIQK---GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVAR 297
            L  K      +N +D  G+T L  A + G+  +   L                      
Sbjct: 241 NLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL---------------------- 278

Query: 298 GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 328
                    L  G DP   +     P+   A
Sbjct: 279 ---------LDYGADPFIANKSGLRPVDFGA 300

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.0 bits (206), Expect = 4e-19
 Identities = 45/232 (19%), Positives = 76/232 (32%), Gaps = 53/232 (22%)

Query: 197 AAYHGDLYQLKGLIRAGAD---LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
           A  H     L  L+   A    L+  +  G++ LHLA   G       L   G  + + +
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75

Query: 254 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFL----------------CIAVAR 297
           + G+T L  A +        +L++   S   D + ++L                  +   
Sbjct: 76  RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN 135

Query: 298 GDSDLLKRVLSNGVDPNSRDYD----------------------------------HRTP 323
            +++   R     +   + +YD                                   RTP
Sbjct: 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195

Query: 324 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 375
           LH+A       + +LLL+AGA    +   G TPL    +  N  L +LL   
Sbjct: 196 LHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.3 bits (173), Expect = 1e-14
 Identities = 32/192 (16%), Positives = 57/192 (29%), Gaps = 19/192 (9%)

Query: 216 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD---INIKDKFGNTPLLEAIKCGHDGVT 272
                 DG + LHLA    +E    FL+        +++++  G T L  A   G     
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 273 SLLVKEGASLNVDDAGSFLC--IAVARGDSDLLKRVLSNGVDPN--------------SR 316
             L   GA + V + G      +A           +L                     + 
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 317 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 376
           D  H      +             +    +  ++  G+TPL    +  +  +++LL DA 
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 377 CTQLSEFHYCSQ 388
                    C +
Sbjct: 182 ADLNKPEPTCGR 193

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.3 bits (160), Expect = 5e-13
 Identities = 34/165 (20%), Positives = 57/165 (34%), Gaps = 17/165 (10%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSP--------------LHLATSRGYEDITLFL 242
           A           L++      +   D                     +      +     
Sbjct: 85  ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144

Query: 243 IQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG---SFLCIAVARGD 299
               + +  ++  G+TPL  A+      +  LL   GA LN  +     + L +AV    
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA 204

Query: 300 SDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 344
           + +L+ +L  G DP +R Y  RTPL  A      ++A+LL   GA
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.7 bits (143), Expect = 9e-11
 Identities = 20/65 (30%), Positives = 28/65 (43%)

Query: 221 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGA 280
             GR+PLHLA       +   L++ G D   +   G TPL  A+   +  +  LL   GA
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

Query: 281 SLNVD 285
               D
Sbjct: 250 PEPED 254

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 84.2 bits (207), Expect = 1e-18
 Identities = 31/240 (12%), Positives = 62/240 (25%), Gaps = 28/240 (11%)

Query: 159 LTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLK---GLIRAGAD 215
           +  LL    ++      +     H    ++E+      AA  G    L     L+ +   
Sbjct: 61  VRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVIC--FVAAITGCSSALDTLCLLLTSDEI 118

Query: 216 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK--FGNTPLLEAIKCGHDGVTS 273
           +     +      LA   G+  +   L +      +             A + GH  V +
Sbjct: 119 VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLN 178

Query: 274 LLVKEGASLNVDDAGS-----FLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 328
            L +   +       +     F   AV RG  +++  +L   V     +           
Sbjct: 179 RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYV 238

Query: 329 SEGLYLMAKLLLE----------------AGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
           +  +      L E                   S   +  +    L         + I+ L
Sbjct: 239 NPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFL 298

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 78.0 bits (191), Expect = 1e-16
 Identities = 27/212 (12%), Positives = 55/212 (25%), Gaps = 30/212 (14%)

Query: 217 NKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAIKCGHDGVTSLL 275
           N  +Y+    L L     +E++    I      +          +        + V  LL
Sbjct: 6   NIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLL 65

Query: 276 VKEGASLNVDDA-------------GSFLCIAVARGDSDLLKRV---LSNGVDPNSRDYD 319
               A  N +                    +A   G S  L  +   L++         +
Sbjct: 66  CLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE 125

Query: 320 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDR--WGNTPLDEGRMCGNKNLIKLLEDAKC 377
           +     +AA  G   +   L E   +                    G+ +++  L +   
Sbjct: 126 NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 185

Query: 378 TQLSE-----------FHYCSQGMIGIAENLL 398
           T+ +            +    +G   +   LL
Sbjct: 186 TEATAMIQAENYYAFRWAAVGRGHHNVINFLL 217

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 73.4 bits (179), Expect = 5e-15
 Identities = 31/204 (15%), Positives = 51/204 (25%), Gaps = 28/204 (13%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVDIN---I 251
           AA +G L+ L  L              +      LA   G+  +   L +         I
Sbjct: 133 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI 192

Query: 252 KDKFGNTPLLEAIKCGHDGVTSLLVKEG---------ASLNVDDAGSFLCIAVARGDSDL 302
           + +        A+  GH  V + L+                 +   +           ++
Sbjct: 193 QAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEM 252

Query: 303 ---LKRVLSNGV------DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA-----SVFT 348
               K    +GV          + +     L     E L    + LL            T
Sbjct: 253 HDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT 312

Query: 349 KDRWGNTPLDEGRMCGNKNLIKLL 372
                N  L      GN+    LL
Sbjct: 313 IPGDANELLRLALRLGNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 58.8 bits (141), Expect = 4e-10
 Identities = 25/174 (14%), Positives = 44/174 (25%), Gaps = 34/174 (19%)

Query: 198 AYHGDLYQLKGLIRAGADLN---KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 254
           A +G L+ L  L               +  +    A  RG+ ++  FL+   V +   + 
Sbjct: 169 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEI 228

Query: 255 F----------------------GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLC 292
                                   +     +   G   +    V +   L        L 
Sbjct: 229 HEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDL----VTKSECLQGFYMLRNLI 284

Query: 293 IAVARGDSDLLKRVLSNGVDP-----NSRDYDHRTPLHVAASEGLYLMAKLLLE 341
                   D ++ +LS           +   D    L +A   G      LLL 
Sbjct: 285 RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 8/53 (15%), Positives = 13/53 (24%), Gaps = 5/53 (9%)

Query: 197 AAYHGDLYQLKGLIRAGAD-----LNKTDYDGRSPLHLATSRGYEDITLFLIQ 244
                 L  ++ L+                D    L LA   G +     L+ 
Sbjct: 286 RNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 80.2 bits (196), Expect = 4e-18
 Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 37/205 (18%)

Query: 206 LKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 264
           +  L+  GA+LN   D  G + LHLA      D    L+  G D N +D  G TPL  A+
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 64

Query: 265 KCGHDGVTSL----------------------------------LVKEGASLNVDDAG-- 288
                GV  +                                  L+   A +N  D    
Sbjct: 65  AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGK 124

Query: 289 SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 348
           + L  A A  +++ +  +L +  + +++D    TPL +AA EG Y  +K LL+  A+   
Sbjct: 125 TALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREI 184

Query: 349 KDRWGNTPLDEGRMCGNKNLIKLLE 373
            D     P D      + ++++LL+
Sbjct: 185 TDHMDRLPRDVASERLHHDIVRLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 1/92 (1%)

Query: 300 SDLLKRVLSNGVDPNSR-DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 358
           + ++  +L+ G + N+  D    T LH+AA       AK LL+AGA   ++D  G TPL 
Sbjct: 2   AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLH 61

Query: 359 EGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGM 390
                    + ++L   + T L+   +     
Sbjct: 62  AAVAADAMGVFQILLRNRATNLNARMHDGTTP 93

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.9 bits (178), Expect = 3e-16
 Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 1/110 (0%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDG 99
            + + LFK    E ++Q++  + E+    GE +++QG+  D  Y +  G  +     +  
Sbjct: 18  CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGV 77

Query: 100 SEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
                +      SFGE++++ N P+  T+       L  +D+ +F  I+ 
Sbjct: 78  GRCVGNY-DNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIV 126

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (180), Expect = 8e-16
 Identities = 40/218 (18%), Positives = 78/218 (35%), Gaps = 44/218 (20%)

Query: 197 AAYHGDLYQLKGLI----RAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 252
           A   G+L  +  L+    + G +L+  +   ++PLHLA       +   L+  G      
Sbjct: 10  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL 69

Query: 253 DKFGNTPLLEAIKCGHDGVTSLLVKEGA-------------------------------- 280
           D+ G T    A +         L+   A                                
Sbjct: 70  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 129

Query: 281 --------SLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL 332
                   ++++    S L  AV      +++ +L +G + N++ Y   + LH A+  GL
Sbjct: 130 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL 189

Query: 333 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 370
             + + L+ +GA    K+   +TPL   R     ++++
Sbjct: 190 LPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 1e-11
 Identities = 22/76 (28%), Positives = 38/76 (50%)

Query: 193 RFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 252
               A  +  L  ++ L++ GA++N   Y G S LH A+ RG   +   L++ G D ++K
Sbjct: 147 PLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK 206

Query: 253 DKFGNTPLLEAIKCGH 268
           +   +TPL+ A     
Sbjct: 207 NCHNDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 2e-09
 Identities = 40/200 (20%), Positives = 66/200 (33%), Gaps = 44/200 (22%)

Query: 222 DGRSPLHLATSRGYEDITLFLI----QKGVDINIKDKFGNTPL----------------- 260
           DG +PLH+A  +G       L+    Q G +++I +    TPL                 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 261 ----------------LEAIKCGHDGVTSLLVKEGA------SLNVDDAGSFLCIAVARG 298
                             A +         L+   A           D  + L +AV   
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 299 DSDLLKRVLSNGVD-PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 357
             + ++ +L  G D         R+PL  A       M +LLL+ GA+V  +   G++ L
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 181

Query: 358 DEGRMCGNKNLIKLLEDAKC 377
                 G   L++ L  +  
Sbjct: 182 HSASGRGLLPLVRTLVRSGA 201

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 2e-08
 Identities = 16/45 (35%), Positives = 26/45 (57%)

Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDI 238
            +SA+  G L  ++ L+R+GAD +  +    +PL +A SR   DI
Sbjct: 181 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI 225

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.6 bits (172), Expect = 2e-15
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 1/125 (0%)

Query: 39  YIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGED 98
           ++ KVS+ +         +   L    F  G+ I+ QG   D+ + +  G    +    +
Sbjct: 3   FLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSE 62

Query: 99  GSEETVSQ-LQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRK 157
             E      L P+  FGE+++L N P+  TV      + +++D+  F  +L       ++
Sbjct: 63  NEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKLDRPRFERVLGPCSDILKR 122

Query: 158 VLTNL 162
            +   
Sbjct: 123 NIQQY 127

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.5 bits (172), Expect = 2e-15
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 5/109 (4%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDG 99
           IEK  LF        + I   +    F+ GE +++QG+  D  Y +  G      +    
Sbjct: 22  IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQG-----EMDVYV 76

Query: 100 SEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSIL 148
           + E  + +    SFGE++++   P+  TV+     +L  ID+ S+  IL
Sbjct: 77  NNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 125

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 73.6 bits (179), Expect = 2e-15
 Identities = 17/65 (26%), Positives = 33/65 (50%)

Query: 213 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 272
           G++ +K D DG++P+ LA   G  ++ ++LIQ+G  +   D   +T    A    H  + 
Sbjct: 211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV 270

Query: 273 SLLVK 277
            +  +
Sbjct: 271 DIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 70.5 bits (171), Expect = 2e-14
 Identities = 41/238 (17%), Positives = 73/238 (30%), Gaps = 58/238 (24%)

Query: 197 AAYHGDL--------YQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 248
            A +           ++ K  I AGAD+N  D D  +PL LA       +  +L++ G D
Sbjct: 40  IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD 99

Query: 249 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEG----------------ASLNVDDAGSFLC 292
             I +K   + L +A      G+   ++                     +   + G    
Sbjct: 100 PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV 159

Query: 293 IAVARGDSDLLKRVLSNGVDPNSRDYDHR------------------------------- 321
            +         K         +S  Y  R                               
Sbjct: 160 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE 219

Query: 322 ---TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 376
              TP+ +AA EG   +   L++ GASV   D   +T     +   + N++ + +  +
Sbjct: 220 DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 63.2 bits (152), Expect = 8e-12
 Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 25/167 (14%)

Query: 225 SPLHLAT-SRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN 283
           SP+ L T + G   IT  + ++ V+I    +   T L           +  L+   A   
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEA--- 57

Query: 284 VDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG 343
                               K  ++ G D N+ D D  TPL +A       +   L++AG
Sbjct: 58  --------------------KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAG 97

Query: 344 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGM 390
           A     ++   + L +     +  ++  + ++   +         GM
Sbjct: 98  ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM 144

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 59.4 bits (142), Expect = 1e-10
 Identities = 38/234 (16%), Positives = 63/234 (26%), Gaps = 59/234 (25%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFL--------IQKGVD 248
               G     + + R   ++       R+ LH   S    + +  L        I  G D
Sbjct: 8   TEAAGSYAITEPITRESVNIIDPR-HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 66

Query: 249 INIKDKFGNTPLLEAI---------------------------------KCGHDGVTSLL 275
           +N  D   NTPL+ A+                                      G+   +
Sbjct: 67  VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM 126

Query: 276 VKEG----------------ASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYD 319
           +                     +   + G     +         K         +S  Y 
Sbjct: 127 LNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK 186

Query: 320 HRTPLHVAASEGLYLMAK-LLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 372
            RT LH AA      + K L+ E G++   +D  G TP+      G   ++  L
Sbjct: 187 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 240

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.4 bits (169), Expect = 7e-15
 Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 6/132 (4%)

Query: 39  YIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGED 98
           +IE +   K        ++V  +  + +  GE I+ QG+  D  + V  G +      + 
Sbjct: 3   FIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKG 62

Query: 99  G------SEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYF 152
                      +++      FGE++++ N P+  +       + L +D Q+F  +L    
Sbjct: 63  KSDIEENGAVEIARCLRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCM 122

Query: 153 CDGRKVLTNLLE 164
              ++ +    E
Sbjct: 123 EIMKRNIATYEE 134

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 72.1 bits (175), Expect = 8e-15
 Identities = 29/164 (17%), Positives = 51/164 (31%), Gaps = 35/164 (21%)

Query: 181 FHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITL 240
             + +   ++                + L     +  +    G + LH+A ++GY ++  
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

Query: 241 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS 300
            LIQ   D+NIKD  G TPL  A   G +    +L                         
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL------------------------- 251

Query: 301 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 344
                 + N  D  + +   +T   VA  +    +   L E   
Sbjct: 252 ------VENLCDMEAVNKVGQTAFDVADED----ILGYLEELQK 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 69.4 bits (168), Expect = 6e-14
 Identities = 57/241 (23%), Positives = 93/241 (38%), Gaps = 36/241 (14%)

Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 253
           F +A   GD  ++  L+  GAD+N  + DG + LH A      D+  FL++ G +IN  D
Sbjct: 44  FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103

Query: 254 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI-------------------- 293
             G  PL  A  CG+  +   L+ +GA +   ++     +                    
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163

Query: 294 ---------AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 344
                           D  + + S  ++         T LHVAA++G   + KLL++A  
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY 223

Query: 345 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC-------TQLSEFHYCSQGMIGIAENL 397
            V  KD  G TPL      G +   ++L +  C          + F    + ++G  E L
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEEL 283

Query: 398 L 398
            
Sbjct: 284 Q 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 56.7 bits (135), Expect = 1e-09
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 218 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV 271
           K  +D  +    A S G  +  L L+++G DIN  +  G T L +A    +  +
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDM 88

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.3 bits (121), Expect = 7e-08
 Identities = 32/136 (23%), Positives = 52/136 (38%)

Query: 261 LEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDH 320
           L+        +   +VK   +    D G+    A + GD++ + R+L  G D N  + D 
Sbjct: 14  LKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDG 73

Query: 321 RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQL 380
            T LH A  +    M K L+E GA++   D  G  PL     CG  ++ + L        
Sbjct: 74  LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133

Query: 381 SEFHYCSQGMIGIAEN 396
           +        +    E 
Sbjct: 134 AVNSEGDTPLDIAEEE 149

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.5 bits (106), Expect = 5e-06
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI 251
           AA+ G     + L+    D+   +  G++   +A     EDI  +L +     N+
Sbjct: 239 AAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD----EDILGYLEELQKKQNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.4 bits (98), Expect = 5e-05
 Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 252 KDKF-GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRVLS 308
           K KF      L A   G       L++ GA +N  +    + L  A    + D++K ++ 
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE 94

Query: 309 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 358
           NG + N  D +   PLH AAS G   +A+ L+  GA V   +  G+TPLD
Sbjct: 95  NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD 144

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (172), Expect = 9e-15
 Identities = 36/207 (17%), Positives = 63/207 (30%), Gaps = 46/207 (22%)

Query: 222 DGRSPLHLATSRGYEDITLFLIQ----KGVDINIKDKFGNTPLLEAIKCG---------- 267
           DG S LHLA     + +T+ +I+        +N ++    TPL  A+             
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 268 -------------------------------HDGVTSLLVKEGASLNVDDAGSFLCIAVA 296
                                              T+  +         +  + L +A  
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 297 RGDSDLLKRVLSNGVDP-NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 355
            G   +++ ++S G D       + RT LH+A       +  LLL+ GA V      G +
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 356 PLDEGRMCGNKNLIKLLEDAKCTQLSE 382
           P        +  + + L       L  
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTLENLQM 207

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (145), Expect = 3e-11
 Identities = 38/195 (19%), Positives = 64/195 (32%), Gaps = 46/195 (23%)

Query: 197 AAYHGD----LYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 252
           A  H +    +  ++ +    A LN  +   ++PLHLA      +I   L+  G D  ++
Sbjct: 9   AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 68

Query: 253 DKFG---------------------------------------NTPLLEAIKCGHDGVTS 273
           D  G                                       +T L  A   G+ G+  
Sbjct: 69  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 128

Query: 274 LLVKEGAS---LNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASE 330
           LLV  GA        +  + L +AV   + DL+  +L  G D N   Y   +P  +    
Sbjct: 129 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR 188

Query: 331 GLYLMAKLLLEAGAS 345
               + + L +    
Sbjct: 189 PSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 14/56 (25%), Positives = 22/56 (39%)

Query: 199 YHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 254
              +   +  L++ GAD+N+  Y G SP  L   R    I   L Q  ++      
Sbjct: 154 DLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 209

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

 Score = 62.5 bits (151), Expect = 1e-12
 Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 7/125 (5%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDG 99
           +  V LF+      + +IV  L       G VI   G   D+++FV  G           
Sbjct: 13  VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEG-------SVSV 65

Query: 100 SEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVL 159
           +     +L P + FGE++++   P+  TV       LL +    F  +            
Sbjct: 66  ATPNPVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 125

Query: 160 TNLLE 164
              LE
Sbjct: 126 KTALE 130

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.7 bits (151), Expect = 2e-12
 Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 14/142 (9%)

Query: 222 DGRSPLHL---ATSRGYEDITLFLIQKGVDINIK------DKFGNTPLLEAIKCGHDG-- 270
           D  + LH    A         L     GVD+  K       +   T L  A++       
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 271 -VTSLLVKEGASLNV--DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVA 327
            +   LV+   +L+       + L       +++ LK +L         +    TPL +A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 328 ASEGLYLMAKLLLEAGASVFTK 349
                    +LL +A +  F  
Sbjct: 122 KRLKHEHCEELLTQALSGRFNS 143

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 61.9 bits (149), Expect = 2e-12
 Identities = 15/122 (12%), Positives = 38/122 (31%), Gaps = 10/122 (8%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCH-GVLEEVGVGED 98
           + +V LF+      ++ I  RL    F     ++ +G+ ++++ F+    +      G  
Sbjct: 8   VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67

Query: 99  GSEETVSQLQPNSSFGEVSILCNIPQP---------YTVRICELSRLLRIDKQSFTSILE 149
                 S L+     G+  +   +             TV+         +       +  
Sbjct: 68  SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127

Query: 150 IY 151
            +
Sbjct: 128 QF 129

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

 Score = 60.6 bits (146), Expect = 8e-12
 Identities = 20/136 (14%), Positives = 46/136 (33%), Gaps = 6/136 (4%)

Query: 45  LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETV 104
           ++   + E    +   +          +  +G++ + L+++  G ++ +  G  G     
Sbjct: 8   VWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHIS 67

Query: 105 SQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLE 164
             ++P   FG            T    E S++L I  ++  ++L+      R  L  L +
Sbjct: 68  RIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAK 127

Query: 165 GKESNLRLKQVESDIT 180
                  L   E    
Sbjct: 128 ------ELGYAERRTV 137

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.2 bits (145), Expect = 1e-11
 Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 3/119 (2%)

Query: 35  LYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVG 94
           +    ++ V  F+      + QI +  + E    G  +  QG++    Y V  G L+   
Sbjct: 21  IIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKV 80

Query: 95  V--GEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIY 151
                     T+  L   ++FGE  IL N P+  T+   E S LLRI+++ F ++ E Y
Sbjct: 81  SETSSHQDAVTICTLGIGTAFGES-ILDNTPRHATIVTRESSELLRIEQEDFKALWEKY 138

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 132

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 57.6 bits (138), Expect = 7e-11
 Identities = 19/131 (14%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 50  SSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQP 109
           +   +   +   H   +     ++ QG   + LY++  G +  +   E+G E  +S L  
Sbjct: 2   TDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQ 61

Query: 110 NSSFGEVSILCNIPQ-PYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEGKES 168
               GE+ +     +    VR      +  I  + F  ++++      ++   +      
Sbjct: 62  GDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR---- 117

Query: 169 NLRLKQVESDI 179
             RL+     +
Sbjct: 118 --RLQVTSEKV 126

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.9 bits (138), Expect = 8e-11
 Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 3/154 (1%)

Query: 222 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVK--EG 279
           D    L  A   G +D    L+  G      D  G +PL  A + GH   T +L++    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 280 ASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 339
                    + L +A + G +++++ +L +G D N++D    T LH A       + +LL
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 340 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 373
           ++ GA V T+ ++  T  D     GN++L ++L+
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.6 bits (124), Expect = 6e-09
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 3/145 (2%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA  G   +++ L+  GA        G SPLHLA   G+   T  L++ GV  + + K  
Sbjct: 9   AARAGQDDEVRILMANGAPFTTDWL-GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRVLSNGVDPN 314
            TPL  A   GH  +  +L+K GA +N  D    + L  A      ++++ ++  G D +
Sbjct: 68  RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127

Query: 315 SRDYDHRTPLHVAASEGLYLMAKLL 339
           ++    +T   ++   G   +A++L
Sbjct: 128 TQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (91), Expect = 1e-04
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 194 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFL 242
            + A  H     ++ LI+ GAD++      ++   ++   G ED+   L
Sbjct: 104 LHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 9e-11
 Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 9/185 (4%)

Query: 197 AAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 255
           A    + ++++ L+ +  + L + D DGR PLH + S    +IT FL+ K  ++N+ D  
Sbjct: 7   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 66

Query: 256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-------SFLCIAVARGDSDLLKRVLS 308
            ++           G   ++          D         + L +AV +   ++ + ++ 
Sbjct: 67  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 126

Query: 309 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG-ASVFTKDRWGNTPLDEGRMCGNKN 367
           NG     +D  ++ PLH AAS G   + +LL   G ++V  +D+ G TPL      G+ +
Sbjct: 127 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 186

Query: 368 LIKLL 372
              LL
Sbjct: 187 AAVLL 191

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.5 bits (137), Expect = 3e-10
 Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 8/146 (5%)

Query: 226 PLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 284
           PLH A     +  +   L  K   +  KD+ G  PL  ++      +TS L+ +  ++N+
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 285 DDAGSFLCIAV-------ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAK 337
           DD                   +            D N       T LH+A  +  + +++
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122

Query: 338 LLLEAGASVFTKDRWGNTPLDEGRMC 363
            L+E GASV  KD++   PL      
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASV 148

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 2e-09
 Identities = 33/137 (24%), Positives = 43/137 (31%), Gaps = 34/137 (24%)

Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD-INIKDKFGNTPLLEAIKCG 267
           LI  GA +   D   + PLH A S G   +   L   G   +N +DK G TPL  A+  G
Sbjct: 124 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 183

Query: 268 HDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVA 327
           H     LLV                                 G + +  D        VA
Sbjct: 184 HGDAAVLLV------------------------------EKYGAEYDLVDNKGAKAEDVA 213

Query: 328 ASEGLYLMAKLLLEAGA 344
            +E    + K  L    
Sbjct: 214 LNEQ---VKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 1/78 (1%)

Query: 291 LCIAVARGDSDLLKRVL-SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 349
           L  A    +   ++ +L S       +D D R PLH + S   + +   LL    +V   
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 63

Query: 350 DRWGNTPLDEGRMCGNKN 367
           D   ++      +  +  
Sbjct: 64  DYPDDSGWTPFHIACSVG 81

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (110), Expect = 9e-07
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 209 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 248
           + + GA+ +  D  G     +A +   E +  F +   VD
Sbjct: 192 VEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 322 TPLHVAASEGLYLMAKLLLEA-GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQL 380
            PLH A  E  +   + LL +  + +  KD+ G  PL          +   L        
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 381 SEFHYCSQGM 390
            + +    G 
Sbjct: 62  LDDYPDDSGW 71

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 35/139 (25%), Positives = 48/139 (34%), Gaps = 34/139 (24%)

Query: 235 YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIA 294
           + +++ FLI+ G  + IKDKF   PL  A   G   +  LL   G               
Sbjct: 117 WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG--------------- 161

Query: 295 VARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA-GASVFTKDRWG 353
                              N +D    TPL  A +EG    A LL+E  GA     D  G
Sbjct: 162 ---------------KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 206

Query: 354 NTPLDEGRMCGNKNLIKLL 372
               D   +  N+ + K  
Sbjct: 207 AKAED---VALNEQVKKFF 222

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 8e-10
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 2/153 (1%)

Query: 225 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 284
           + L  A +RG  +    L+Q  V++N ++ FG T L        +    LL++       
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 285 DDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEG-LYLMAKLLLEA 342
           D  G + +  A   G  D L+ +L    D N  D +   PLH+AA EG L ++  L+   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 343 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 375
            ++V  ++  G+T  D  R+ G   ++ L++  
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 6e-09
 Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 4/150 (2%)

Query: 197 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 256
           AA  GDL QL  L++   ++N  +  GR+ L +      E     L+ +G + ++KD+ G
Sbjct: 8   AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIAR-RLLLRGANPDLKDRTG 66

Query: 257 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDP--- 313
              + +A + G       L++  A +N++D    L + +A  +  L              
Sbjct: 67  FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 126

Query: 314 NSRDYDHRTPLHVAASEGLYLMAKLLLEAG 343
             R++   T   +A   G   +  L+   G
Sbjct: 127 GHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 288 GSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLH 325
           G+ L  A ARGD + L  +L N V+ N+++   RT L 
Sbjct: 2   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ 39

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 1e-09
 Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 3/151 (1%)

Query: 226 PLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVK-EGASLN 283
            L  A +RG  +++   L ++ V  +  ++FG T L   +         LL +    ++ 
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ 64

Query: 284 VDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG 343
                S +  A   G  D LK ++ +G D N  D     P+H+A  EG   +   L  A 
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL-AAE 123

Query: 344 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 374
           + +  +D  G TPL+     G ++L+ +L+ 
Sbjct: 124 SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 3e-09
 Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 1/147 (0%)

Query: 196 SAAYHGDLYQLKGLI-RAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 254
            AA  GD+ +++ L+ R     +  +  G++ L +            L Q          
Sbjct: 8   GAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTS 67

Query: 255 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPN 314
             +     A     D +  L+         D  G+       +     +   L+   D +
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLH 127

Query: 315 SRDYDHRTPLHVAASEGLYLMAKLLLE 341
            RD    TPL +A   G   +  +L  
Sbjct: 128 RRDARGLTPLELALQRGAQDLVDILQG 154

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 6/114 (5%)

Query: 40  IEKVSLFKGCSSEFINQIVIRL-HEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGED 98
           +  +      S+    ++   L  E     G V+  QG      Y +  G +        
Sbjct: 12  LLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNV----VI 67

Query: 99  GSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELS-RLLRIDKQSFTSILEIY 151
             +  V  L     FG+++++ + P+  ++ + E +   LR+DK+ F  IL   
Sbjct: 68  YGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDV 121

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Length = 134

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 51.7 bits (123), Expect = 6e-09
 Identities = 19/132 (14%), Positives = 48/132 (36%), Gaps = 10/132 (7%)

Query: 52  EFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNS 111
           + +++++   H   +     I+  G+  + L+F+  G +  +   +DG E  +  L    
Sbjct: 3   KHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGD 62

Query: 112 SFGEVSIL----CNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEGKE 167
            FGE+ +         +   VR      +  I    F  + +        + + + +   
Sbjct: 63  FFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMAD--- 119

Query: 168 SNLRLKQVESDI 179
              RL++    +
Sbjct: 120 ---RLRKTTRKV 128

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 52.3 bits (124), Expect = 6e-09
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 33  QTLYMPYIEKVSLFKGCSSEFINQIV--IRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
           +T++   + ++ LF+G   E    I+  ++LH      GE I++ GN   QL F+  G +
Sbjct: 2   ETMF-DTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEI 60

Query: 91  EEVGVGEDGSEETVSQLQPNSSFGEVS-ILCNIPQPYTVRICELSRLLRIDKQSFTSILE 149
             V   ++     + Q++        S    N     +         + I K    S L 
Sbjct: 61  SIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLF 120

Query: 150 IY 151
            Y
Sbjct: 121 RY 122

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (122), Expect = 2e-08
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 11/140 (7%)

Query: 35  LYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVG 94
                +  + LF      F+  ++ +L  E F PG+ I+ +G +  ++YF+ HGV+  + 
Sbjct: 65  NCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT 124

Query: 95  VGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCD 154
            G    +         S FGE+ +L    +  +VR     RL  +   +F  +LE Y   
Sbjct: 125 KGNKEMKL-----SDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMM 179

Query: 155 GRKVLTNLLEGKESNLRLKQ 174
            R   T  ++      RL +
Sbjct: 180 RRAFETVAID------RLDR 193

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-06
 Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 5/125 (4%)

Query: 225 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 284
           + L  ++  G  D+   +I +  D ++ +  G T L  A+  GH  +   LV+ G ++N 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 285 DDAG--SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHR---TPLHVAASEGLYLMAKLL 339
            D+   + L  A +  +  + K ++ +G    +  Y              EG    ++ L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 340 LEAGA 344
                
Sbjct: 123 YGVQE 127

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 5/124 (4%)

Query: 258 TPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRD 317
             LL++   G   +   ++ E    ++ +      +  A                 N   
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 318 YDHR--TPLHVAASEGLYLMAKLLLEAGASVFTKDRW-GNTPLD--EGRMCGNKNLIKLL 372
            D    TPLH AAS     + K L+E+GA+VF        T  D  E    G     + L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 373 EDAK 376
              +
Sbjct: 123 YGVQ 126

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 6e-04
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 9/53 (16%)

Query: 207 KGLIRAGADLN-KTDYDGRSPLHL--ATSRGYEDITLFLIQKGVDINIKDKFG 256
           K L+ +GA +   T  D ++          GY   + FL        +++K G
Sbjct: 84  KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL------YGVQEKMG 130

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 129

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: CRP-like transcriptional regulator TM1171, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.0 bits (100), Expect = 8e-06
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 1/112 (0%)

Query: 54  INQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSF 113
           + +++       F  GE++  Q + I+ +  +  G L+   V E+G    + +++P    
Sbjct: 3   LKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQII 62

Query: 114 GEVSILCNIP-QPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLE 164
               I  + P  P  V   E S++L I K+ F  +L          L ++ E
Sbjct: 63  ASGFIFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSE 114

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-05
 Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 226 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD 285
            L  A +RG  +    L++ G + N  + +G  P+   +         LL+        D
Sbjct: 6   WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCAD 65

Query: 286 DAGSFLCIAVARGDSDLLKR--VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA 342
            A     +  A  +  L     +   G   + RD   R P+ +A   G   +A+ L  A
Sbjct: 66  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 124

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.3 bits (79), Expect = 0.003
 Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 226 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD 285
               A   G  D     + KG D+N   + G  PL  A  CG   +   L+ +GA +N  
Sbjct: 5   EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 64

Query: 286 D--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 341
           D    + L  AV  G    +K +LS G D   +  D  T L    ++ +    K LL+
Sbjct: 65  DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAI----KALLQ 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	403
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.98
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.88
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	99.81
d1ne6a2	132	Regulatory subunit of Protein kinase A {Cow (Bos t	99.8
d1zyba2	147	Probable transcription regulator BT4300, N-termina	99.79
d1ne6a1	136	Regulatory subunit of Protein kinase A {Cow (Bos t	99.79
d1cx4a2	147	Regulatory subunit of Protein kinase A {Rat (Rattu	99.78
d1q3ea_	193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	99.77
d2gaua2	142	Transcriptional regulator PG0396, N-terminal domai	99.77
d1vp6a_	133	Putative ion channel CnbD {Mesorhizobium loti [Tax	99.76
d1o7fa2	155	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.74
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	99.73
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	99.72
d3e5ua2	139	Chlorophenol reduction protein CprK {Desulfitobact	99.71
d1o7fa3	124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.7
d1wgpa_	137	Probable cyclic nucleotide-gated ion channel 6 {Th	99.69
d1o5la1	129	CRP-like transcriptional regulator TM1171, N-termi	99.67
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	99.65
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	99.63
d2bgca2	131	Listeriolysin regulatory protein PrfA, N-terminal	96.48
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	90.4

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-37  Score=275.55  Aligned_cols=192  Identities=25%  Similarity=0.270  Sum_probs=176.2

Q ss_pred             hhhHhhhHHHhhccCCHHHHHHHHHcCCC---ccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHH
Q 015680          187 EAELALRFNSAAYHGDLYQLKGLIRAGAD---LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  263 (403)
Q Consensus       187 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A  263 (403)
                      +.+|.||||+||..|+.+++++|+++|++   ++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A   85 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA   85 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhh
Confidence            46789999999999999999999999887   667788999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHcCCCc-----------------------------------------------cc--cCCCchHHHH
Q 015680          264 IKCGHDGVTSLLVKEGASL-----------------------------------------------NV--DDAGSFLCIA  294 (403)
Q Consensus       264 ~~~~~~~~v~~L~~~~~~~-----------------------------------------------~~--~~~~~~l~~a  294 (403)
                      +..++.+++++|++.+...                                               +.  .+|.||||+|
T Consensus        86 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A  165 (255)
T d1oy3d_          86 CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA  165 (255)
T ss_dssp             TTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHH
T ss_pred             hccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccc
Confidence            9999999999997653210                                               11  2356999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCC-CCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 015680          295 VARGDSDLLKRVLSNGVDPNSR-DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE  373 (403)
Q Consensus       295 ~~~~~~~~v~~Ll~~~~~~~~~-~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  373 (403)
                      +..++.+++++|++.+++.+.. +..|.||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+.+++.+++++|+
T Consensus       166 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll  245 (255)
T d1oy3d_         166 VIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR  245 (255)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHH
T ss_pred             ccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            9999999999999999988754 578999999999999999999999999999999999999999999999999999999


Q ss_pred             Hcccc
Q 015680          374 DAKCT  378 (403)
Q Consensus       374 ~~~~~  378 (403)
                      ++||+
T Consensus       246 ~~Ga~  250 (255)
T d1oy3d_         246 AHGAP  250 (255)
T ss_dssp             HTTCC
T ss_pred             HcCCC
Confidence            99996

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-36  Score=258.90  Aligned_cols=191  Identities=27%  Similarity=0.400  Sum_probs=176.5

Q ss_pred             cCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHH
Q 015680          183 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE  262 (403)
Q Consensus       183 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~  262 (403)
                      ....|.+|.||||+|+..|+.+++++++..+.+....+..+.++++.|+..++.+++++|+++|++++.+|..|.||||+
T Consensus        30 ~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~  109 (223)
T d1uoha_          30 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHY  109 (223)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhH
Confidence            34567888999999999999999999999998888888888999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHH
Q 015680          263 AIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL  340 (403)
Q Consensus       263 A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll  340 (403)
                      |+..|+.+++++|+++|++++..+  +.||||+|+..++.+++++|+..+.+++..|.+|+||||+|+..|+.+++++|+
T Consensus       110 A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL  189 (223)
T d1uoha_         110 AASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV  189 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHH
Confidence            999999999999999999888765  668999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 015680          341 EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  374 (403)
Q Consensus       341 ~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  374 (403)
                      ++|+|++.+|.+|+||||+| .+|+.+++++|++
T Consensus       190 ~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         190 SQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             HCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            99999999999999999998 4799999999985

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-33  Score=244.06  Aligned_cols=208  Identities=31%  Similarity=0.376  Sum_probs=189.3

Q ss_pred             hhhHHHhhccCCHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCCh
Q 015680          191 ALRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  269 (403)
Q Consensus       191 ~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  269 (403)
                      .+.++.+|..|+.+.++.++.. +..++.+|..|+||||+|+..|+.+++++|++.+.+....+..+.++++.|+..++.
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD   83 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccccccccccccccccc
Confidence            3568889999999999888865 467889999999999999999999999999999999988889999999999999999


Q ss_pred             HHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcc
Q 015680          270 GVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF  347 (403)
Q Consensus       270 ~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~  347 (403)
                      +++++|++++++++..+  |.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|...|.+++
T Consensus        84 ~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~  163 (223)
T d1uoha_          84 EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN  163 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             chhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceee
Confidence            99999999999988765  6799999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHccccccccc-------cccccchhhhhhhhc
Q 015680          348 TKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF-------HYCSQGMIGIAENLL  398 (403)
Q Consensus       348 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~-------~~~~~~~~~~~~~l~  398 (403)
                      .+|..|.||||+|+..|+.++|++|+++|++.-...       .++..++.++++.|+
T Consensus       164 ~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~~~~~~i~~~Ll  221 (223)
T d1uoha_         164 IQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMV  221 (223)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCCTTHHHHHHHHH
T ss_pred             eccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCHHHHhccc
Confidence            999999999999999999999999999999765433       335556666666654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-34  Score=248.73  Aligned_cols=195  Identities=23%  Similarity=0.239  Sum_probs=174.0

Q ss_pred             hHhhhHHHhhccCCH----HHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHH
Q 015680          189 ELALRFNSAAYHGDL----YQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  264 (403)
Q Consensus       189 ~~~~~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~  264 (403)
                      +|.||||+|+..|+.    ++++++...++++|..|..|+||||+|+..|+.+++++|++.|++++.+|..|.|||++|+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            467999999999996    4455666788999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHcCCCccc--------cCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHcCcHHH
Q 015680          265 KCGHDGVTSLLVKEGASLNV--------DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRD-YDHRTPLHVAASEGLYLM  335 (403)
Q Consensus       265 ~~~~~~~v~~L~~~~~~~~~--------~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~  335 (403)
                      ..|+.++++.|++.+.....        .++.+|+|.|+..++.+++++|+..|+.++..+ .+|.||||+|+..|+.++
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~  160 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  160 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHH
Confidence            99999999999998765432        336799999999999999999999999987765 679999999999999999


Q ss_pred             HHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccccc
Q 015680          336 AKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF  383 (403)
Q Consensus       336 ~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~  383 (403)
                      +++|+++|+|++.+|..|.||||+|+.+++.+++++|++.+.+.....
T Consensus       161 v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~  208 (221)
T d1iknd_         161 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQML  208 (221)
T ss_dssp             HHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSC
T ss_pred             HHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCcccccc
Confidence            999999999999999999999999999999999999999988765543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3.9e-33  Score=249.50  Aligned_cols=186  Identities=23%  Similarity=0.300  Sum_probs=167.6

Q ss_pred             hHhhhHHHhhccCCHHHHHHH--------HHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHH
Q 015680          189 ELALRFNSAAYHGDLYQLKGL--------IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL  260 (403)
Q Consensus       189 ~~~~~l~~a~~~~~~~~~~~l--------l~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l  260 (403)
                      +|.||||+||..|+.+++++|        ++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||+
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l  111 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL  111 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccc
Confidence            478999999999999999876        466899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHcCC---C----------------------------------------------ccccCCCchH
Q 015680          261 LEAIKCGHDGVTSLLVKEGA---S----------------------------------------------LNVDDAGSFL  291 (403)
Q Consensus       261 ~~A~~~~~~~~v~~L~~~~~---~----------------------------------------------~~~~~~~~~l  291 (403)
                      ++|+..++.++++++...+.   .                                              ....++.|||
T Consensus       112 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  191 (277)
T d2fo1e1         112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL  191 (277)
T ss_dssp             HHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH
T ss_pred             cchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcc
Confidence            99999999988888865321   0                                              0012356889


Q ss_pred             HHHHHcCCHHHHHHHH-HCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHH
Q 015680          292 CIAVARGDSDLLKRVL-SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK  370 (403)
Q Consensus       292 ~~a~~~~~~~~v~~Ll-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~  370 (403)
                      |+++..++.+++++++ ..+.+.+.+|..|+||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+.+|+.++|+
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~  271 (277)
T d2fo1e1         192 HYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVD  271 (277)
T ss_dssp             HHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             ccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999998755 678889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 015680          371 LLED  374 (403)
Q Consensus       371 ~Ll~  374 (403)
                      +|++
T Consensus       272 lL~~  275 (277)
T d2fo1e1         272 IFDR  275 (277)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            9885

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.98  E-value=1.1e-31  Score=242.01  Aligned_cols=206  Identities=28%  Similarity=0.374  Sum_probs=183.2

Q ss_pred             hhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcC
Q 015680          188 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  267 (403)
Q Consensus       188 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~  267 (403)
                      -++.|+|+.||..|++++|++||++|++++..|..|+||||+|+..|+.+++++|+++|++....+..+.+||++|+..+
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccccc
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCC---------------------------CCCCCCCC
Q 015680          268 HDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNG---------------------------VDPNSRDY  318 (403)
Q Consensus       268 ~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~---------------------------~~~~~~~~  318 (403)
                      +.++++.|++++...+..+  +.+++++|+..+..++++.++...                           .+....+.
T Consensus       118 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (291)
T d1s70b_         118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK  197 (291)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred             ccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccC
Confidence            9999999999998877654  668999999999998888887431                           23355667


Q ss_pred             CCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccccccccccchhhhh
Q 015680          319 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIA  394 (403)
Q Consensus       319 ~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  394 (403)
                      .|.||||+|+..|+.+++++|++.|+|++.++..|.||||+|+..|+.++|++|+++|++.-... ..+.+++.++
T Consensus       198 ~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d-~~G~TaL~~A  272 (291)
T d1s70b_         198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN-KVGQTAFDVA  272 (291)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCTTTSC
T ss_pred             CCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCCHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999865443 4445555553

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-30  Score=234.63  Aligned_cols=194  Identities=27%  Similarity=0.305  Sum_probs=143.7

Q ss_pred             hHhhhHHHhhccCCHHHHHHHHHcCCCccccC-CCCCcHHHHHHHcCcHHHHHHHHhcCCCCCc----------------
Q 015680          189 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINI----------------  251 (403)
Q Consensus       189 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~----------------  251 (403)
                      ++.++|+.|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+.+++++|++.+.....                
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            45566777777777777777777777776554 3567777777777777777777664432211                


Q ss_pred             ------------------------------------------------------------CCCCCCcHHHHHHHcCChHH
Q 015680          252 ------------------------------------------------------------KDKFGNTPLLEAIKCGHDGV  271 (403)
Q Consensus       252 ------------------------------------------------------------~~~~g~t~l~~A~~~~~~~~  271 (403)
                                                                                  .+..|.||||+|++.|+.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence                                                                        12246677777777777777


Q ss_pred             HHHHHHc-CCCccccC--CCchHHHHHHcC----CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHH-cC
Q 015680          272 TSLLVKE-GASLNVDD--AGSFLCIAVARG----DSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE-AG  343 (403)
Q Consensus       272 v~~L~~~-~~~~~~~~--~~~~l~~a~~~~----~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~-~g  343 (403)
                      +++|+++ |++++..+  +.++.+.+...+    ..+++++|+++|++++..|..|.||||+|+..|+.+++++|++ .|
T Consensus       164 ~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g  243 (285)
T d1wdya_         164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH  243 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred             HHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCC
Confidence            7777754 56666554  334433332222    2357778888888888899999999999999999999999997 59


Q ss_pred             CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcccccccc
Q 015680          344 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE  382 (403)
Q Consensus       344 ~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~  382 (403)
                      +|++.+|.+|.||||+|+.+|+.++|++|+++||++-..
T Consensus       244 ~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         244 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc
Confidence            999999999999999999999999999999999986543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.7e-31  Score=230.84  Aligned_cols=189  Identities=26%  Similarity=0.333  Sum_probs=115.4

Q ss_pred             hhHHHhhccCCHHHHHHHHHcC-CCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCc---CCCCCCcHHHHHHHcC
Q 015680          192 LRFNSAAYHGDLYQLKGLIRAG-ADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI---KDKFGNTPLLEAIKCG  267 (403)
Q Consensus       192 ~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~---~~~~g~t~l~~A~~~~  267 (403)
                      +|||+||..|+.++++.|++.+ ..++.+|..|+||||+|+..|+.+++++|+++|++++.   .+..|.+|+|+|+..+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            4666666666666666666543 45556666666666666666666666666666666542   3445666666666666


Q ss_pred             ChHHHHHHHHcCCCcccc----CCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcC
Q 015680          268 HDGVTSLLVKEGASLNVD----DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG  343 (403)
Q Consensus       268 ~~~~v~~L~~~~~~~~~~----~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g  343 (403)
                      ..++++.++..+...+..    .+.++++.++..++.++++.|+..|.+.+..|..|+||||+|+..|+.+++++|++.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  161 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  161 (229)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccc
Confidence            666666666655443321    2345666666666666666666666666666666666666666666666666666654


Q ss_pred             -CCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-cccccc
Q 015680          344 -ASVFTKDRWGNTPLDEGRMCGNKNLIKLLED-AKCTQL  380 (403)
Q Consensus       344 -~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~-~~~~~~  380 (403)
                       .+++.+|..|.||||+|+.+|+.++|++|++ +|++.-
T Consensus       162 ~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~  200 (229)
T d1ixva_         162 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD  200 (229)
T ss_dssp             CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC
T ss_pred             cccccccccccCCchhhhcccccHHHHHHHHHhcCCCCC
Confidence             4556666666666666666666666666664 355433

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.2e-30  Score=226.58  Aligned_cols=216  Identities=22%  Similarity=0.169  Sum_probs=187.2

Q ss_pred             HHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCcc---ccCCCCCcHHHHHHHcCc
Q 015680          159 LTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLN---KTDYDGRSPLHLATSRGY  235 (403)
Q Consensus       159 l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~---~~~~~g~t~L~~A~~~~~  235 (403)
                      ++.+...+..+....++.... ......+.+|.||||+|+..|+.+++++|+++|++++   ..+..|.+|+|+|+..+.
T Consensus         4 Lh~A~~~g~~~~v~~Ll~~~~-~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~   82 (229)
T d1ixva_           4 LHQACMENEFFKVQELLHSKP-SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGN   82 (229)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCG-GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCC-CcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccc
Confidence            455566565555555544332 2455677889999999999999999999999999876   456779999999999999


Q ss_pred             HHHHHHHHhcCCC--CCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCC-
Q 015680          236 EDITLFLIQKGVD--INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNG-  310 (403)
Q Consensus       236 ~~~~~~Ll~~~~~--~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~-  310 (403)
                      .++++.++..+..  ....+..+.||++.++..++.+++++|++.+...+..+  |.||+|+|+..|+.+++++|++.+ 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  162 (229)
T d1ixva_          83 LEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK  162 (229)
T ss_dssp             HHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccccc
Confidence            9999999988765  44567789999999999999999999999998887655  679999999999999999999987 


Q ss_pred             CCCCCCCCCCChHHHHHHHcCcHHHHHHHHH-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcccc
Q 015680          311 VDPNSRDYDHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT  378 (403)
Q Consensus       311 ~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~-~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  378 (403)
                      .+++.+|.+|+||||+|+..|+.+++++|++ .|+|++.+|.+|.||||+|+.   .+++++|+++|+|
T Consensus       163 ~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         163 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             ccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            5789999999999999999999999999996 599999999999999999984   5899999999987

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=5.2e-31  Score=232.86  Aligned_cols=162  Identities=28%  Similarity=0.334  Sum_probs=148.3

Q ss_pred             CcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcC-----------------
Q 015680          184 GKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG-----------------  246 (403)
Q Consensus       184 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~-----------------  246 (403)
                      ...+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|++.+                 
T Consensus        39 ~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~  118 (255)
T d1oy3d_          39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD  118 (255)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------
T ss_pred             cCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhh
Confidence            345677889999999999999999999999999999999999999999999999999987532                 


Q ss_pred             ------------------------------CCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCcccc---CCCchHHH
Q 015680          247 ------------------------------VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD---DAGSFLCI  293 (403)
Q Consensus       247 ------------------------------~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~---~~~~~l~~  293 (403)
                                                    .+++.+|..|.||||+|+..|+.+++++|++++++.+..   .|.||||+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~  198 (255)
T d1oy3d_         119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL  198 (255)
T ss_dssp             -------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred             hcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccc
Confidence                                          223456778999999999999999999999999888753   37799999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCC
Q 015680          294 AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  345 (403)
Q Consensus       294 a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d  345 (403)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++||+
T Consensus       199 A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         199 AVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             cccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999996

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-30  Score=224.60  Aligned_cols=190  Identities=22%  Similarity=0.250  Sum_probs=135.3

Q ss_pred             hHhhhHHHhhccCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHH
Q 015680          189 ELALRFNSAAYHGDLYQLKGLIR----AGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  264 (403)
Q Consensus       189 ~~~~~l~~a~~~~~~~~~~~ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~  264 (403)
                      +|.||||+||..|+.++++.|++    .|++++..|..|+||||+|+..|+.+++++|+++|++.+..+..+.++++.|.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            58899999999999999999875    78999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHcCCCcc------ccCCCchHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCChHHHHHHHcCcHHHHH
Q 015680          265 KCGHDGVTSLLVKEGASLN------VDDAGSFLCIAVARGDSDLLKRVLSNGVDPN-SRDYDHRTPLHVAASEGLYLMAK  337 (403)
Q Consensus       265 ~~~~~~~v~~L~~~~~~~~------~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~-~~~~~g~t~Lh~A~~~~~~~~~~  337 (403)
                      ..++..+++.+........      ..+..++++.+...........|.....+.. ..+..|.+||+.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            9999998888776533211      1122345555555555555555555444332 22334555555555555555555


Q ss_pred             HHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcccc
Q 015680          338 LLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT  378 (403)
Q Consensus       338 ~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  378 (403)
                      .+++.|.+.+.+|..|.||||+|+.+|+.+++++|+++|++
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad  202 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD  202 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCC
Confidence            55555555555555555555555555555555555555554

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.2e-30  Score=208.13  Aligned_cols=151  Identities=27%  Similarity=0.380  Sum_probs=125.7

Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHH
Q 015680          225 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL  302 (403)
Q Consensus       225 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~  302 (403)
                      +|||+|+..|+.++|++|+++|++++.+|..|+||||+|+ .|+.+++++|++++++++..+  +.++++.++..++.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            6777777777777777777777777777777777777665 567777777777777776554  4577777888888888


Q ss_pred             HHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCC-CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcc
Q 015680          303 LKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA-SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK  376 (403)
Q Consensus       303 v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~-d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  376 (403)
                      ++.|++.+.+++..|..|.+|+|+|+..++.+++++|+++|+ +++.+|..|.||||+|+.+++.+++++|+++|
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            888888888888889999999999999999999999998876 78899999999999999999999999999987

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.4e-29  Score=234.27  Aligned_cols=190  Identities=27%  Similarity=0.368  Sum_probs=172.2

Q ss_pred             hhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHH
Q 015680          192 LRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  271 (403)
Q Consensus       192 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~  271 (403)
                      ||||.||..|+.++|++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.++
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~   81 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNM   81 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCccc-----------------------------------cCCCchHHHHHHcCCHHHHHHHHHCCCCCCCC
Q 015680          272 TSLLVKEGASLNV-----------------------------------DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR  316 (403)
Q Consensus       272 v~~L~~~~~~~~~-----------------------------------~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~  316 (403)
                      +++|+....+...                                   .++.++++.|+..++.++++.|++.|++++..
T Consensus        82 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~  161 (408)
T d1n11a_          82 VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA  161 (408)
T ss_dssp             HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcC
Confidence            9999876553221                                   23457899999999999999999999999999


Q ss_pred             CCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccc
Q 015680          317 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS  381 (403)
Q Consensus       317 ~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~  381 (403)
                      +.+|.+|||+|+..|+.+++++|+.+|++++..+..|.||+|++....+.++...|+..+.....
T Consensus       162 ~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~  226 (408)
T d1n11a_         162 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA  226 (408)
T ss_dssp             CSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccc
Confidence            99999999999999999999999999999998888888888888888888888888777665443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=2.6e-30  Score=232.91  Aligned_cols=214  Identities=27%  Similarity=0.398  Sum_probs=182.1

Q ss_pred             HHHHHHHhhcchHHHHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCC
Q 015680          145 TSILEIYFCDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR  224 (403)
Q Consensus       145 ~~l~~~~~~~~~~ll~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~  224 (403)
                      ..++.+........++.+++.+.              .++..+.+|.||||+|+..|+.+++++|+++|.+.+..+..+.
T Consensus        42 t~l~~A~~~G~~~~v~~Ll~~Ga--------------dvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~  107 (291)
T d1s70b_          42 AVFLAACSSGDTEEVLRLLERGA--------------DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW  107 (291)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHCC--------------CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCC--------------CCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccc
Confidence            34454444444555555554332              2234567789999999999999999999999999988899999


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHc-CCCc---------------------
Q 015680          225 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKE-GASL---------------------  282 (403)
Q Consensus       225 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~-~~~~---------------------  282 (403)
                      |||+.|+..++.+++++|+++|+..+..|..+.+|+++|+..+..+.++.++.. +.++                     
T Consensus       108 ~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (291)
T d1s70b_         108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNS  187 (291)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcc
Confidence            999999999999999999999999999999999999999999998888888753 2221                     


Q ss_pred             -------cccCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCC
Q 015680          283 -------NVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT  355 (403)
Q Consensus       283 -------~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t  355 (403)
                             ...++.||||+|+..|+.++++.|++.|++++.++.+|+||||+|+..|+.++|++|+++|+|++.+|..|.|
T Consensus       188 ~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~T  267 (291)
T d1s70b_         188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQT  267 (291)
T ss_dssp             TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC
Confidence                   2244679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcc
Q 015680          356 PLDEGRMCGNKNLIKLLEDAK  376 (403)
Q Consensus       356 ~l~~A~~~~~~~~v~~Ll~~~  376 (403)
                      |||+|+.    +++++|.+..
T Consensus       268 aL~~A~e----~~~~~L~~~~  284 (291)
T d1s70b_         268 AFDVADE----DILGYLEELQ  284 (291)
T ss_dssp             TTTSCCS----GGGHHHHHHH
T ss_pred             HHHHHHH----HHHHHHHHHh
Confidence            9999975    5777776553

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-28  Score=232.36  Aligned_cols=184  Identities=28%  Similarity=0.374  Sum_probs=151.1

Q ss_pred             hhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChH
Q 015680          191 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG  270 (403)
Q Consensus       191 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~  270 (403)
                      .+|+|+++...+.++...++..+......+..+.||||+|+..++.++++++++.+...+..+..|.||++.|+..++.+
T Consensus       199 ~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~  278 (408)
T d1n11a_         199 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP  278 (408)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHH
Confidence            34444444444444444444444444444555667778888888888888888888888888889999999999999999


Q ss_pred             HHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCccc
Q 015680          271 VTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT  348 (403)
Q Consensus       271 ~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~  348 (403)
                      ++++|+++|++++..+  +.||||.++..++.++++++++.|++++.+|.+|.||||+|+..|+.++|++|+++|+|++.
T Consensus       279 i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~  358 (408)
T d1n11a_         279 VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE  358 (408)
T ss_dssp             HHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             HHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            9999999998887754  56899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHH
Q 015680          349 KDRWGNTPLDEGRMCGNKNLIKLLED  374 (403)
Q Consensus       349 ~~~~g~t~l~~A~~~~~~~~v~~Ll~  374 (403)
                      +|.+|.||||+|+.+|+.++|++|..
T Consensus       359 ~d~~G~t~L~~A~~~~~~~iv~~L~~  384 (408)
T d1n11a_         359 VSSDGTTPLAIAKRLGYISVTDVLKV  384 (408)
T ss_dssp             CCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999998885543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=2.6e-28  Score=208.71  Aligned_cols=187  Identities=27%  Similarity=0.353  Sum_probs=171.0

Q ss_pred             chhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCC-CCcCCCCCCcHHHHHH
Q 015680          186 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD-INIKDKFGNTPLLEAI  264 (403)
Q Consensus       186 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~A~  264 (403)
                      .+.+|.||||+||..|+.+++++|++.|++++.++..+.++++.++..++............. .......+.++.+.+.
T Consensus        19 ~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (209)
T d1ot8a_          19 MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAA   98 (209)
T ss_dssp             HHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            467889999999999999999999999999999999999999999999988877776664433 3445566889999999


Q ss_pred             HcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHc
Q 015680          265 KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA  342 (403)
Q Consensus       265 ~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~  342 (403)
                      ........+.|.+.+++++..+  +.||+++++..+..++++.+++.+.+++..|..|.||||+|+..|+.+++++|+++
T Consensus        99 ~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~  178 (209)
T d1ot8a_          99 RLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDN  178 (209)
T ss_dssp             HTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHC
Confidence            9999999999999999887754  67999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHH
Q 015680          343 GASVFTKDRWGNTPLDEGRMCGNKNLIKLL  372 (403)
Q Consensus       343 g~d~~~~~~~g~t~l~~A~~~~~~~~v~~L  372 (403)
                      |+|++.+|..|.||||+|+.+|+.++|++|
T Consensus       179 gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         179 FANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999999999999986

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-28  Score=201.21  Aligned_cols=148  Identities=30%  Similarity=0.384  Sum_probs=108.7

Q ss_pred             HHHHHHHcCcHHHHHHHHhc-CCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHH
Q 015680          226 PLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL  302 (403)
Q Consensus       226 ~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~  302 (403)
                      .||.|+..|+.++|++|++. +++++.+|..|+||||+|+ .|+.+++++|++++.+++..+  +.+|++.++..++.++
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~   83 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDT   83 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence            45556666666666555553 4555555555666665554 345555566665555555433  3456666666666777


Q ss_pred             HHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 015680          303 LKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA  375 (403)
Q Consensus       303 v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  375 (403)
                      ++++++.|++++.+|.+|+||||+|+..|+.+++++|+ .|++++.+|.+|+||||+|+.+|+.+++++|++|
T Consensus        84 ~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          84 LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            77777777788888899999999999999999999887 6899999999999999999999999999999987

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-28  Score=200.07  Aligned_cols=151  Identities=23%  Similarity=0.329  Sum_probs=143.9

Q ss_pred             hhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHH
Q 015680          192 LRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  271 (403)
Q Consensus       192 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~  271 (403)
                      ++||.||..|+.+++++|+++|++++.+|..|.||||+|+ .|+.+++++|++.|++++.++..|.+|++.++..++...
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            7899999999999999999999999999999999999886 789999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCChHHHHHHHcCcHHHHHHHHHcC
Q 015680          272 TSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGV-DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG  343 (403)
Q Consensus       272 v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~-~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g  343 (403)
                      ++.|++.+.+++..+  +.+|+|+|+..++.+++++|++++. +++.+|.+|.||||+|+..|+.+++++|+++|
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999998888755  6799999999999999999999886 78999999999999999999999999999987

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4.3e-28  Score=196.79  Aligned_cols=147  Identities=28%  Similarity=0.418  Sum_probs=126.8

Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCcccc--CCCchHHHHHHcCCHHH
Q 015680          225 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD--DAGSFLCIAVARGDSDL  302 (403)
Q Consensus       225 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~--~~~~~l~~a~~~~~~~~  302 (403)
                      ||||.|+..|+.++|++|+++|++++ .|..|+||||+|+..++.++++.++.........  .+.++++.++...+.++
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI   82 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccccccccccccccccccccccccccee
Confidence            78888888888888888888888776 5777888888888888888888877765544433  34577888888888888


Q ss_pred             HHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHH
Q 015680          303 LKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL  372 (403)
Q Consensus       303 v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~L  372 (403)
                      ++++...|++.+.+|.+|+||||+|+..|+.+++++|+++|+|++.+|.+|.||||+|+.+|+.+++++|
T Consensus        83 ~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          83 VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            8888899999999999999999999999999999999999999999999999999999999999999977

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=3.4e-29  Score=223.64  Aligned_cols=206  Identities=22%  Similarity=0.233  Sum_probs=167.3

Q ss_pred             hhHHH-hhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHH--------HhcCCCCCcCCCCCCcHHHH
Q 015680          192 LRFNS-AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFL--------IQKGVDINIKDKFGNTPLLE  262 (403)
Q Consensus       192 ~~l~~-a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L--------l~~~~~~~~~~~~g~t~l~~  262 (403)
                      ||||. +...|+..+++.|.+.+++... +..|+||||+|+..|+.+++++|        ++.|+++|.+|..|+||||+
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~   80 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML   80 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCC-CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecc
Confidence            45552 3335777777777777776532 24699999999999999888776        56799999999999999999


Q ss_pred             HHHcCChHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCC------------------------------
Q 015680          263 AIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNG------------------------------  310 (403)
Q Consensus       263 A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~------------------------------  310 (403)
                      |+..|+.+++++|+++|++++..+  |.||+++|...++.+++.++...+                              
T Consensus        81 A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (277)
T d2fo1e1          81 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA  160 (277)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHH
T ss_pred             ccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccc
Confidence            999999999999999999998765  779999999999998888886421                              


Q ss_pred             -----------------CCCCCCCCCCChHHHHHHHcCcHHHHHHHH-HcCCCcccCCCCCCCHHHHHHHcCCHHHHHHH
Q 015680          311 -----------------VDPNSRDYDHRTPLHVAASEGLYLMAKLLL-EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL  372 (403)
Q Consensus       311 -----------------~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll-~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~L  372 (403)
                                       ...+..+..|.||||+++..++.+++++++ ..+.+.+.+|..|.||||+|+.+|+.++|++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~L  240 (277)
T d2fo1e1         161 SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL  240 (277)
T ss_dssp             HHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence                             001334556899999999999999998755 67899999999999999999999999999999


Q ss_pred             HHccccccccccc--------cccchhhhhhhhc
Q 015680          373 EDAKCTQLSEFHY--------CSQGMIGIAENLL  398 (403)
Q Consensus       373 l~~~~~~~~~~~~--------~~~~~~~~~~~l~  398 (403)
                      +++|++.-....+        +..+..++++.|+
T Consensus       241 l~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~  274 (277)
T d2fo1e1         241 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFD  274 (277)
T ss_dssp             HHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999986544332        4555677777665

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.5e-27  Score=192.97  Aligned_cols=149  Identities=26%  Similarity=0.382  Sum_probs=139.3

Q ss_pred             hhHHHhhccCCHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChH
Q 015680          192 LRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG  270 (403)
Q Consensus       192 ~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~  270 (403)
                      ..|+.||..|+.++|++|+++ +++++..|..|+||||+|+. |+.+++++|++.+.+++..+..|.+|++.|+..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            349999999999999999986 68999999999999999874 8899999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHc
Q 015680          271 VTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA  342 (403)
Q Consensus       271 ~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~  342 (403)
                      +++++++++++++..+  +.||||+|+..|+.+++++|+ .|++++.+|.+|+||||+|+..|+.+++++|+++
T Consensus        83 ~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999888765  679999999999999999887 7899999999999999999999999999999875

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=6.8e-30  Score=235.61  Aligned_cols=191  Identities=18%  Similarity=0.075  Sum_probs=155.7

Q ss_pred             cchhhHhhhHHHhhccCCHHHHHH---HHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCC--CCCCcH
Q 015680          185 KHEAELALRFNSAAYHGDLYQLKG---LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD--KFGNTP  259 (403)
Q Consensus       185 ~~~~~~~~~l~~a~~~~~~~~~~~---ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~--~~g~t~  259 (403)
                      ..+..+.|+|++||.+|+.+++++   |++.|++++..+..|+||||+||..|+.++|++|++.|++++..+  ..|+||
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~  164 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA  164 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCCh
Confidence            345678999999999999888776   678999999999999999999999999999999999999998765  459999


Q ss_pred             HHHHHHcCChHHHHHHHHcCCCccc-----cCCCchHHHHHHcCCHHHHHHHHHCCCCCCC-------------------
Q 015680          260 LLEAIKCGHDGVTSLLVKEGASLNV-----DDAGSFLCIAVARGDSDLLKRVLSNGVDPNS-------------------  315 (403)
Q Consensus       260 l~~A~~~~~~~~v~~L~~~~~~~~~-----~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~-------------------  315 (403)
                      ||+|+..|+.++|++|++.|++...     .++.+|++.|+..|+.+++++|++.|++++.                   
T Consensus       165 L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~  244 (346)
T d2ajaa1         165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIAR  244 (346)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHH
T ss_pred             hHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHH
Confidence            9999999999999999999876543     2345778889999999999999987643210                   


Q ss_pred             --------------CCCC----------------CChHHHHHHHcCcHHHHHHHHHcCCCc-----ccCCCCCCCHHHHH
Q 015680          316 --------------RDYD----------------HRTPLHVAASEGLYLMAKLLLEAGASV-----FTKDRWGNTPLDEG  360 (403)
Q Consensus       316 --------------~~~~----------------g~t~Lh~A~~~~~~~~~~~Ll~~g~d~-----~~~~~~g~t~l~~A  360 (403)
                                    ...+                +.++++.|+..+..+++++|++.+...     ...+.+|+||||+|
T Consensus       245 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA  324 (346)
T d2ajaa1         245 HVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA  324 (346)
T ss_dssp             HHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHH
T ss_pred             hhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHH
Confidence                          0011                236788888889999999999876543     34446799999999


Q ss_pred             HHcCCHHHHHHHHHc
Q 015680          361 RMCGNKNLIKLLEDA  375 (403)
Q Consensus       361 ~~~~~~~~v~~Ll~~  375 (403)
                      +++|+.++|++|++.
T Consensus       325 ~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         325 LRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHTCTTHHHHHTTS
T ss_pred             HHcCcHHHHHHHhCC
Confidence            999999999999975

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=3.8e-27  Score=201.34  Aligned_cols=194  Identities=26%  Similarity=0.265  Sum_probs=170.3

Q ss_pred             HHHHHHHHHcCCCccc-cCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCC
Q 015680          203 LYQLKGLIRAGADLNK-TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS  281 (403)
Q Consensus       203 ~~~~~~ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~  281 (403)
                      .++|++|+++|++++. .|..|.||||+||..|+.+++++|++.|++++.++..+.++++.++..++.............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            5899999999999987 589999999999999999999999999999999999999999999999998877666665433


Q ss_pred             ccc---cCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHH
Q 015680          282 LNV---DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD  358 (403)
Q Consensus       282 ~~~---~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~  358 (403)
                      ...   ..+.++.+.+.........+.|...+++++..+..|+|||+.|+..+..++++.++..+.+++..|..|.||||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~  161 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF  161 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccc
Confidence            322   33667889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHccccccccccc--------cccchhhhhhh
Q 015680          359 EGRMCGNKNLIKLLEDAKCTQLSEFHY--------CSQGMIGIAEN  396 (403)
Q Consensus       359 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~--------~~~~~~~~~~~  396 (403)
                      +|+.+|+.++|++|+++|++...+...        +..+..+++++
T Consensus       162 ~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~l  207 (209)
T d1ot8a_         162 LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRL  207 (209)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             hhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhh
Confidence            999999999999999999986544321        44455555554

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.3e-26  Score=187.86  Aligned_cols=149  Identities=28%  Similarity=0.410  Sum_probs=140.1

Q ss_pred             HhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCCh
Q 015680          190 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  269 (403)
Q Consensus       190 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  269 (403)
                      ..|||+.|++.|+.++++.||++|++++ .+..|+||||+|+..++.+++..+..........+..+.++++.++...+.
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3589999999999999999999999887 689999999999999999999999998888888888899999999999999


Q ss_pred             HHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHH
Q 015680          270 GVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL  339 (403)
Q Consensus       270 ~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~L  339 (403)
                      ++++++..++.+.+..+  |.||||+|+..|+.+++++|++.|++++..|.+|.||||+|+..|+.+++++|
T Consensus        81 ~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999998887655  77999999999999999999999999999999999999999999999999976

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.1e-27  Score=200.96  Aligned_cols=164  Identities=24%  Similarity=0.264  Sum_probs=149.7

Q ss_pred             ecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCC------CcCCCC
Q 015680          182 HIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI------NIKDKF  255 (403)
Q Consensus       182 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~------~~~~~~  255 (403)
                      .++..+.+|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+..++.++++.|++.+...      ......
T Consensus        31 ~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  110 (221)
T d1iknd_          31 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN  110 (221)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTT
T ss_pred             CcccCCCCCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence            34566788999999999999999999999999999999999999999999999999999999976542      334456


Q ss_pred             CCcHHHHHHHcCChHHHHHHHHcCCCcccc---CCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCc
Q 015680          256 GNTPLLEAIKCGHDGVTSLLVKEGASLNVD---DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL  332 (403)
Q Consensus       256 g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~---~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~  332 (403)
                      |.||||.|+..++.+++++|++.+..++..   +|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++
T Consensus       111 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~  190 (221)
T d1iknd_         111 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS  190 (221)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSC
T ss_pred             cchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCC
Confidence            899999999999999999999999988754   47899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 015680          333 YLMAKLLLEAGAS  345 (403)
Q Consensus       333 ~~~~~~Ll~~g~d  345 (403)
                      .+++++|++.+.+
T Consensus       191 ~~~~~~l~~~~~~  203 (221)
T d1iknd_         191 TRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHHHTTSCG
T ss_pred             HHHHHHHHHcCCc
Confidence            9999999998655

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.7e-25  Score=197.92  Aligned_cols=195  Identities=25%  Similarity=0.347  Sum_probs=155.2

Q ss_pred             hHHHHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCHHHHHHHHHcCCCcc------------------
Q 015680          156 RKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLN------------------  217 (403)
Q Consensus       156 ~~ll~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~------------------  217 (403)
                      ..++..+++.+..++...+++.+.+.+. ..+..|.||||+|+..|+.+++++|++.+...+                  
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~-~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCc-cCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCC
Confidence            3445555555555555555555444332 233457788888888888888888877543320                  


Q ss_pred             ----------------------------------------------------------ccCCCCCcHHHHHHHcCcHHHH
Q 015680          218 ----------------------------------------------------------KTDYDGRSPLHLATSRGYEDIT  239 (403)
Q Consensus       218 ----------------------------------------------------------~~~~~g~t~L~~A~~~~~~~~~  239 (403)
                                                                                .....|.||||+|+..|+.+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  164 (285)
T d1wdya_          85 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL  164 (285)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHH
T ss_pred             ccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHH
Confidence                                                                      1123367899999999999999


Q ss_pred             HHHHh-cCCCCCcCCCCCCcHHHHHHHcCC----hHHHHHHHHcCCCccccC--CCchHHHHHHcCCHHHHHHHHH-CCC
Q 015680          240 LFLIQ-KGVDINIKDKFGNTPLLEAIKCGH----DGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLS-NGV  311 (403)
Q Consensus       240 ~~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~----~~~v~~L~~~~~~~~~~~--~~~~l~~a~~~~~~~~v~~Ll~-~~~  311 (403)
                      ++|++ .|++++..+..|.++++.+...+.    ..++++|+++|++++.++  |.||||+|+..|+.+++++|++ .|+
T Consensus       165 ~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~  244 (285)
T d1wdya_         165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI  244 (285)
T ss_dssp             HHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSC
T ss_pred             HHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCC
Confidence            99997 489999999999998887765443    569999999999998764  7799999999999999999997 589


Q ss_pred             CCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCC
Q 015680          312 DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR  351 (403)
Q Consensus       312 ~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~  351 (403)
                      +++..|.+|.||||+|+..|+.+++++|+++|||++.+|.
T Consensus       245 din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         245 EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            9999999999999999999999999999999999998874

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8e-26  Score=176.48  Aligned_cols=120  Identities=29%  Similarity=0.481  Sum_probs=85.7

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccCCCchHHHHHHcCCHHH
Q 015680          223 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDL  302 (403)
Q Consensus       223 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~l~~a~~~~~~~~  302 (403)
                      +.++||+|+..|+++++++|+++|++++.+|..|.||+|+|+ .|+.+++++|                           
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~L---------------------------   54 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELL---------------------------   54 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHH---------------------------
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccc---------------------------
Confidence            346777777777777777777777777777777777766543 4555555554                           


Q ss_pred             HHHHHHCCCCCCCCCCCCC-hHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 015680          303 LKRVLSNGVDPNSRDYDHR-TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  374 (403)
Q Consensus       303 v~~Ll~~~~~~~~~~~~g~-t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  374 (403)
                          ++.|++++..+..|. ||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+.+|+.+++++|++
T Consensus        55 ----l~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          55 ----LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             ----HTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ----cccccccccccccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence                555555666665554 58888888888888888888888888888888888888888888888888764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.5e-25  Score=202.57  Aligned_cols=170  Identities=20%  Similarity=0.181  Sum_probs=104.7

Q ss_pred             hhhHhhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcH-------HHHHHHHhcCCCCCcCCCCCCcH
Q 015680          187 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYE-------DITLFLIQKGVDINIKDKFGNTP  259 (403)
Q Consensus       187 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~-------~~~~~Ll~~~~~~~~~~~~g~t~  259 (403)
                      |.+|.||||+||..|+.++|++|+++|++++.+|..|+||||.|+..++.       ++++++.   ..++.+|..|+||
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~t~  180 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNRTI  180 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTTCCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcccccCCH
Confidence            55666777777777777777777777777777777777777777765542       2333332   2345556667777


Q ss_pred             HHHHHHcCC----hH--------HHHHHHHcCCCccccC---CCchHHHHHHcCCHHHHH-----HHHHCCCCCCCCCCC
Q 015680          260 LLEAIKCGH----DG--------VTSLLVKEGASLNVDD---AGSFLCIAVARGDSDLLK-----RVLSNGVDPNSRDYD  319 (403)
Q Consensus       260 l~~A~~~~~----~~--------~v~~L~~~~~~~~~~~---~~~~l~~a~~~~~~~~v~-----~Ll~~~~~~~~~~~~  319 (403)
                      ||+++..+.    ..        ++.++.+.+.......   ..++++.+........+.     .++.  ..+|.+|.+
T Consensus       181 lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~in~~D~~  258 (301)
T d1sw6a_         181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA--NMLNAQDSN  258 (301)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH--HTTTCCCTT
T ss_pred             HHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh--cCccCCCCC
Confidence            776665443    11        2333444433222211   122233322222222211     1222  136888999


Q ss_pred             CChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHH
Q 015680          320 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR  361 (403)
Q Consensus       320 g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~  361 (403)
                      |+||||+|++.|+.++|++|+++|+|++.+|+.|.||||+|+
T Consensus       259 G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            999999999999999999999999999999999999999986

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-25  Score=175.86  Aligned_cols=119  Identities=26%  Similarity=0.351  Sum_probs=97.9

Q ss_pred             hhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCC-cHHHHHHHcCCh
Q 015680          191 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGN-TPLLEAIKCGHD  269 (403)
Q Consensus       191 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~-t~l~~A~~~~~~  269 (403)
                      .++||.|+..|+++++++|+++|++++.++..|.||||+|+ .|+.+++++|+++|++++.++..+. ||||+|+..|+.
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~   82 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFL   82 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            46899999999999999999999999999999999999775 7999999999999999999888765 588888887776


Q ss_pred             HHHHHHHHcCCCccccCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHH
Q 015680          270 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE  341 (403)
Q Consensus       270 ~~v~~L~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~  341 (403)
                      +++++|+++|+                               +++.+|..|+||||+|+..|+.+++++|+.
T Consensus        83 ~~v~~Ll~~ga-------------------------------~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          83 DTLVVLHRAGA-------------------------------RLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHTC-------------------------------CSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccc-------------------------------ccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            66666655544                               555566667777777777777777777653

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.8e-24  Score=181.87  Aligned_cols=180  Identities=26%  Similarity=0.357  Sum_probs=152.6

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHh----cCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccC--CCchHHHHH
Q 015680          222 DGRSPLHLATSRGYEDITLFLIQ----KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAV  295 (403)
Q Consensus       222 ~g~t~L~~A~~~~~~~~~~~Ll~----~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~--~~~~l~~a~  295 (403)
                      .|+||||+||..|+.+++++|++    .|++++.+|..|+||||+|+..|+.+++++|+++|++.+...  +.++++.|.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            59999999999999999998875    799999999999999999999999999999999999887654  668999999


Q ss_pred             HcCCHHHHHHHHHCCC----CCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcc-cCCCCCCCHHHHHHHcCCHHHHH
Q 015680          296 ARGDSDLLKRVLSNGV----DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF-TKDRWGNTPLDEGRMCGNKNLIK  370 (403)
Q Consensus       296 ~~~~~~~v~~Ll~~~~----~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~-~~~~~g~t~l~~A~~~~~~~~v~  370 (403)
                      ..++.++++.+.....    ..+.....+.+|||.+...........|.....+.. ..+..|.+|++.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            9999999998876533    235556678999999999999999999988776653 45567899999999999999999


Q ss_pred             HHHHccccccccccc--------cccchhhhhhhhcccc
Q 015680          371 LLEDAKCTQLSEFHY--------CSQGMIGIAENLLLLP  401 (403)
Q Consensus       371 ~Ll~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~  401 (403)
                      +++++|.+.......        +..+..++++.|+..+
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~G  200 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG  200 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCC
Confidence            999998865543322        5566888899888653

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=2.2e-27  Score=218.67  Aligned_cols=185  Identities=14%  Similarity=0.019  Sum_probs=147.9

Q ss_pred             cccCCCCCcHHHHHHHcCcHHHHHH---HHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCcccc----CCCc
Q 015680          217 NKTDYDGRSPLHLATSRGYEDITLF---LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD----DAGS  289 (403)
Q Consensus       217 ~~~~~~g~t~L~~A~~~~~~~~~~~---Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~----~~~~  289 (403)
                      +.++..|.||||+|++.|+.+++++   |++.|++++.+|..|+||||+||.+|+.++|++|+++|++++..    +|.|
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t  163 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYH  163 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHH
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCC
Confidence            4456789999999999999877665   78899999999999999999999999999999999999998764    3779


Q ss_pred             hHHHHHHcCCHHHHHHHHHCCCCCC---CCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccC-----------------
Q 015680          290 FLCIAVARGDSDLLKRVLSNGVDPN---SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK-----------------  349 (403)
Q Consensus       290 ~l~~a~~~~~~~~v~~Ll~~~~~~~---~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~-----------------  349 (403)
                      |||+|+..|+.+++++|++.|++..   ..+.+|.||+|.|+.+|+.+++++|+++|++++..                 
T Consensus       164 ~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~  243 (346)
T d2ajaa1         164 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIA  243 (346)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHH
T ss_pred             hhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHH
Confidence            9999999999999999999987653   33455778889999999999999999887654311                 


Q ss_pred             ----------------CCC----------------CCCHHHHHHHcCCHHHHHHHHHccccccc-------------ccc
Q 015680          350 ----------------DRW----------------GNTPLDEGRMCGNKNLIKLLEDAKCTQLS-------------EFH  384 (403)
Q Consensus       350 ----------------~~~----------------g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~-------------~~~  384 (403)
                                      +..                +.++++.|+..++.+++++|++.++....             -.-
T Consensus       244 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~Lhl  323 (346)
T d2ajaa1         244 RHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL  323 (346)
T ss_dssp             HHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHH
T ss_pred             HhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHH
Confidence                            011                12567788888999999999988764221             112


Q ss_pred             ccccchhhhhhhhcccc
Q 015680          385 YCSQGMIGIAENLLLLP  401 (403)
Q Consensus       385 ~~~~~~~~~~~~l~~~~  401 (403)
                      .+..|+.++++.||++|
T Consensus       324 A~~~Gn~e~v~lLL~~p  340 (346)
T d2ajaa1         324 ALRLGNQGACALLLSIP  340 (346)
T ss_dssp             HHHHTCTTHHHHHTTSH
T ss_pred             HHHcCcHHHHHHHhCCC
Confidence            36779999999999987

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=6.9e-26  Score=174.90  Aligned_cols=106  Identities=34%  Similarity=0.362  Sum_probs=78.6

Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccCCCchHHHHHHcCCHHHHH
Q 015680          225 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLK  304 (403)
Q Consensus       225 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~l~~a~~~~~~~~v~  304 (403)
                      |||++|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.++                               ++
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~-------------------------------~~   52 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEI-------------------------------LE   52 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTH-------------------------------HH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcccccccccccccccccccccccc-------------------------------cc
Confidence            56666666666666666666666666666666666666666555554                               45


Q ss_pred             HHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHH
Q 015680          305 RVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR  361 (403)
Q Consensus       305 ~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~  361 (403)
                      +|+++|++++.+|..|+||||+|+..|+.+++++|+++|+|++.+|.+|.||||+|.
T Consensus        53 ~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          53 FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             ccccccceeeecccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            555566677777888888888888888888888888888888888888888888873

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.6e-23  Score=168.71  Aligned_cols=129  Identities=22%  Similarity=0.170  Sum_probs=99.3

Q ss_pred             HHHHHcCcHHHHHHHHhcCCCCCcC------CCCCCcHHHHHHHcCChHHHHHHHHcCCCccccCCCchHHHHHHcCCHH
Q 015680          228 HLATSRGYEDITLFLIQKGVDINIK------DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSD  301 (403)
Q Consensus       228 ~~A~~~~~~~~~~~Ll~~~~~~~~~------~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~l~~a~~~~~~~  301 (403)
                      +.|+..+++..+..++..|.+++.+      +..|+||||+|+..+.                            .++.+
T Consensus        11 ~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~----------------------------~~~~~   62 (154)
T d1dcqa1          11 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVD----------------------------RTSLH   62 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCC----------------------------TTTHH
T ss_pred             HHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcC----------------------------CCCHH
Confidence            3445555555555555555544332      4445666666665321                            24567


Q ss_pred             HHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHccccccc
Q 015680          302 LLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS  381 (403)
Q Consensus       302 ~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~  381 (403)
                      ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+.+|+.+++++|+++++....
T Consensus        63 iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~~  142 (154)
T d1dcqa1          63 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN  142 (154)
T ss_dssp             HHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence            77888888888999999999999999999999999999999999999999999999999999999999999999987776


Q ss_pred             ccc
Q 015680          382 EFH  384 (403)
Q Consensus       382 ~~~  384 (403)
                      ...
T Consensus       143 ~~~  145 (154)
T d1dcqa1         143 SHV  145 (154)
T ss_dssp             SSC
T ss_pred             cch
Confidence            543

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.3e-24  Score=169.27  Aligned_cols=122  Identities=30%  Similarity=0.301  Sum_probs=91.5

Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHHHHHHHHcCCCccccCCCchHHHHHHcCCHHHHH
Q 015680          225 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLK  304 (403)
Q Consensus       225 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~~~~~~l~~a~~~~~~~~v~  304 (403)
                      ++|+.|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+                            
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll----------------------------   54 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV----------------------------   54 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHH----------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccccc----------------------------
Confidence            4677777777777777777777777777777777777777766655555554                            


Q ss_pred             HHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHHcCCCcccCCC-CCCCHHHHH--HHcCCHHHHHHHHHccc
Q 015680          305 RVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR-WGNTPLDEG--RMCGNKNLIKLLEDAKC  377 (403)
Q Consensus       305 ~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g~d~~~~~~-~g~t~l~~A--~~~~~~~~v~~Ll~~~~  377 (403)
                         +.|++++.+|.+|+||||+|+..|+.+++++|+++|++++..+. .|+||++++  +.+|+.+++++|++.+.
T Consensus        55 ---~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          55 ---QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             ---HHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             ---ccccccccccccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHH
Confidence               45556677788888888888888888888888888888887664 477877665  56788888888887543

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=5e-25  Score=170.01  Aligned_cols=94  Identities=41%  Similarity=0.567  Sum_probs=86.7

Q ss_pred             hhhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChH
Q 015680          191 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG  270 (403)
Q Consensus       191 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~  270 (403)
                      .|||++|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHcCCCccc
Q 015680          271 VTSLLVKEGASLNV  284 (403)
Q Consensus       271 ~v~~L~~~~~~~~~  284 (403)
                      ++++|+++|++++.
T Consensus        83 ~v~~Ll~~Gad~~~   96 (118)
T d1myoa_          83 CVKLLLSKGADKTV   96 (118)
T ss_dssp             HHHHHHTTCCCSSS
T ss_pred             hhhhhhccccccee
Confidence            88777776665544

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.8e-23  Score=164.04  Aligned_cols=117  Identities=24%  Similarity=0.307  Sum_probs=99.4

Q ss_pred             hhHHHhhccCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcCCCCCCcHHHHHHHcCChHH
Q 015680          192 LRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  271 (403)
Q Consensus       192 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~  271 (403)
                      +.|+.||..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.|++++.+|.+|+||||+|+..|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCccccC---CCchHHH--HHHcCCHHHHHHHHH
Q 015680          272 TSLLVKEGASLNVDD---AGSFLCI--AVARGDSDLLKRVLS  308 (403)
Q Consensus       272 v~~L~~~~~~~~~~~---~~~~l~~--a~~~~~~~~v~~Ll~  308 (403)
                      +++|+++|++++..+   +.|++++  +...|+.+++++|+.
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            998888888776532   3344332  344455555555553

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=4.8e-22  Score=160.00  Aligned_cols=123  Identities=22%  Similarity=0.220  Sum_probs=99.4

Q ss_pred             hhhHHHhhccCCHHHHHHHHHcCCCcccc------CCCCCcHHHHHHHc---CcHHHHHHHHhcCCCCCcCCCCCCcHHH
Q 015680          191 ALRFNSAAYHGDLYQLKGLIRAGADLNKT------DYDGRSPLHLATSR---GYEDITLFLIQKGVDINIKDKFGNTPLL  261 (403)
Q Consensus       191 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~------~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~g~t~l~  261 (403)
                      ...|+.|+..+++..+..++..|.+++..      +..|+||||+|+..   ++.+++++|+++|++++.+|..|+||||
T Consensus         7 l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh   86 (154)
T d1dcqa1           7 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccc
Confidence            34578899999999999999999886644      67799999999974   6789999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHcCCCccccCCCchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHH
Q 015680          262 EAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE  341 (403)
Q Consensus       262 ~A~~~~~~~~v~~L~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~  341 (403)
                      +|+..|+.+++++|+++|+                               +++.+|.+|.||||+|+..|+.+++++|++
T Consensus        87 ~A~~~~~~~~v~~Ll~~ga-------------------------------d~~~~d~~g~tpL~~A~~~~~~~i~~~L~~  135 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKA-------------------------------SIEIANESGETPLDIAKRLKHEHCEELLTQ  135 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTC-------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccccccccccCc-------------------------------cccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999888777766666554                               555566667777777777777777777776


Q ss_pred             cCC
Q 015680          342 AGA  344 (403)
Q Consensus       342 ~g~  344 (403)
                      .++
T Consensus       136 ~~~  138 (154)
T d1dcqa1         136 ALS  138 (154)
T ss_dssp             HHT
T ss_pred             hCC
Confidence            544

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2.4e-22  Score=181.23  Aligned_cols=171  Identities=15%  Similarity=0.068  Sum_probs=112.6

Q ss_pred             hcchHHHHHhhhccccchhhhhcccceeeecCcchhhHhhhHHHhhccCCH-------HHHHHHHHcCCCccccCCCCCc
Q 015680          153 CDGRKVLTNLLEGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDL-------YQLKGLIRAGADLNKTDYDGRS  225 (403)
Q Consensus       153 ~~~~~ll~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~-------~~~~~ll~~~~~~~~~~~~g~t  225 (403)
                      ..+...++.+...+..++...++....+  ....+..|.||||.||..++.       ++++++.   ..++..|..|+|
T Consensus       105 ~~G~T~LH~Aa~~g~~~~v~~Ll~~gad--~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~t  179 (301)
T d1sw6a_         105 EHGNTPLHWLTSIANLELVKHLVKHGSN--RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNRT  179 (301)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTTCCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCC--CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcccccCC
Confidence            3466778888888888888888777654  445677789999999987652       3333332   346677899999


Q ss_pred             HHHHHHHcCc----HH--------HHHHHHhcCCC-CCcCCCCCCcHHHHHHHcCChHHH-----HHHHHcCCCccccCC
Q 015680          226 PLHLATSRGY----ED--------ITLFLIQKGVD-INIKDKFGNTPLLEAIKCGHDGVT-----SLLVKEGASLNVDDA  287 (403)
Q Consensus       226 ~L~~A~~~~~----~~--------~~~~Ll~~~~~-~~~~~~~g~t~l~~A~~~~~~~~v-----~~L~~~~~~~~~~~~  287 (403)
                      |||.++..+.    ..        ++.++++.+.. .......+.++++.+........+     ..++....+....+|
T Consensus       180 ~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G  259 (301)
T d1sw6a_         180 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNG  259 (301)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTS
T ss_pred             HHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCC
Confidence            9998886443    23        33445554433 344455566677666655543333     334444445555668


Q ss_pred             CchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q 015680          288 GSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA  328 (403)
Q Consensus       288 ~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~Lh~A~  328 (403)
                      +||||+|+..|+.++|++|++.|++++..|..|.|||++|+
T Consensus       260 ~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         260 DTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            89999999999999999999999999999999999999986

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=7.6e-20  Score=144.28  Aligned_cols=132  Identities=23%  Similarity=0.365  Sum_probs=120.7

Q ss_pred             ChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEee
Q 015680           26 YPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVS  105 (403)
Q Consensus        26 ~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~  105 (403)
                      .||++-......+.|+.+++|..|+++++..+...+....|++|++|+.+||+++.+|+|.+|.|+++. ..+|.+..+.
T Consensus         4 ~~kt~~~~~~l~~~l~~~~~F~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~y~I~~G~v~v~~-~~~~~~~~~~   82 (136)
T d1cx4a1           4 HPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVG   82 (136)
T ss_dssp             CCCCHHHHHHHHHHHTTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-EETTEEEEEE
T ss_pred             ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHhcceEEEEECCCCEEEECCCcchhhhhhhhheeEEee-ccccceeeee
Confidence            467666666777899999999999999999999999999999999999999999999999999999986 4467778888


Q ss_pred             eecCCCcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHH
Q 015680          106 QLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKV  158 (403)
Q Consensus       106 ~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~l  158 (403)
                      .+.+|++||+.+++.+.|+.++++|.++|+++.++++.|..++..++...+.+
T Consensus        83 ~l~~g~~fg~~~l~~~~~~~~s~~a~~~~~~~~i~~~~f~~ll~~~~~~~r~~  135 (136)
T d1cx4a1          83 NYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKM  135 (136)
T ss_dssp             EEESSCEECHHHHHHCCCCCSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccccchHHHhCCCcceEEEEECCCEEEEEEeHHHHHHHHHhCHHHHHhc
Confidence            99999999999999999999999999999999999999999999988776553

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=5.9e-20  Score=144.17  Aligned_cols=122  Identities=21%  Similarity=0.298  Sum_probs=113.2

Q ss_pred             HhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeE-eeeecCCCccccc
Q 015680           38 PYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEET-VSQLQPNSSFGEV  116 (403)
Q Consensus        38 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~-~~~~~~G~~~g~~  116 (403)
                      ++|+++|+|+.|+++++.++.+.++.+.|++|++|+.+|++++++|+|.+|.|+++..+.+|++.+ +..+.+|++||+.
T Consensus         2 ~~L~~i~~f~~L~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yii~~G~v~~~~~~~~~~~~~~~~~~~~g~~fG~~   81 (132)
T d1ne6a2           2 EFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEI   81 (132)
T ss_dssp             HHHHTSGGGGGSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECCEEEEEESSSSCCEEEEEEECTTCEECHH
T ss_pred             hhHhCCHhhhCCCHHHHHHHHHhCEEEEECCCCEEEEcCCcchHHHHHHhhhheeeccCCccccchhhhhccccceeeEe
Confidence            578999999999999999999999999999999999999999999999999999999888887754 8899999999999


Q ss_pred             ccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHH
Q 015680          117 SILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVL  159 (403)
Q Consensus       117 ~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll  159 (403)
                      +++.+.++.++++|.++|+++.+++..|.+++..+|+...+.+
T Consensus        82 ~~~~~~~~~~t~~a~~~~~~~~i~~~~~~~ll~~~p~~~~~~i  124 (132)
T d1ne6a2          82 ALLMNRPRAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNI  124 (132)
T ss_dssp             HHHHTSSCSSEEEESSCEEEEEEEHHHHHHHTGGGHHHHHHGG
T ss_pred             eecCCCceeEEEEEcccEEEEEEEHHHHHHHHHHCHHHHHHHH
Confidence            9999999999999999999999999999999998887654443

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.79  E-value=3.4e-19  Score=142.50  Aligned_cols=130  Identities=17%  Similarity=0.129  Sum_probs=119.6

Q ss_pred             hHHhhhccCCCCCCCHHHHHHHHHHhh--eeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcc
Q 015680           36 YMPYIEKVSLFKGCSSEFINQIVIRLH--EEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSF  113 (403)
Q Consensus        36 ~~~~l~~~~~f~~l~~~~~~~l~~~~~--~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~  113 (403)
                      ..+.|++.|+|+++++++++++.....  .++|++|++|+.+|++.+.+|+|.+|.|+++..+.+|++.++..+.+|++|
T Consensus         4 ~~d~L~~~~lF~~l~~~~~~~ll~~~~~~~~~~~~g~~i~~~g~~~~~iy~i~~G~v~v~~~~~~g~~~~~~~~~~g~~f   83 (147)
T d1zyba2           4 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLI   83 (147)
T ss_dssp             HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEE
T ss_pred             HHHHHhCCcccccCCHHHHHHHHhhCceEEEEECCCCEEEeccCCccEEEEEecceEEEEEEcCCCCEEEEEEcCCCCEe
Confidence            467889999999999999999998764  678999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCc-ceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          114 GEVSILCNIPQ-PYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       114 g~~~ll~~~~~-~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      |+.+++.+.+. ++++.|.++|.++.++...|.+++..+|.....++..+..+
T Consensus        84 Ge~~~~~~~~~~~~~v~a~~~~~vl~i~~~~~~~~~~~~p~~~~~~~~~ls~r  136 (147)
T d1zyba2          84 EPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNR  136 (147)
T ss_dssp             CGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHH
T ss_pred             ccchhhcccccccceeeecceeeeeehhHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            99998877764 78999999999999999999999999999888888777664

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=5.1e-19  Score=139.15  Aligned_cols=127  Identities=24%  Similarity=0.323  Sum_probs=112.9

Q ss_pred             cChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEe
Q 015680           25 LYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETV  104 (403)
Q Consensus        25 ~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~  104 (403)
                      +.|++.-......+.+++.++|..|+++++.++...+..+.|++|++|+++||+++.+|+|++|.++++..     ...+
T Consensus         7 ~~~~~~~~~~~l~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~gd~~~~~yiI~~G~v~v~~~-----~~~~   81 (136)
T d1ne6a1           7 VIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVN-----NEWA   81 (136)
T ss_dssp             CCCCCHHHHHHHHHHHHHCGGGTSCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEET-----TEEE
T ss_pred             cCCCCHHHHHHHHHHHhCCHhhhhCCHHHHHHHhcceEEEEECCCCEEEeCCCCcceeeeecCCceeeecc-----cccc
Confidence            44565444445578999999999999999999999999999999999999999999999999999999872     2356


Q ss_pred             eeecCCCcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcch
Q 015680          105 SQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGR  156 (403)
Q Consensus       105 ~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~  156 (403)
                      ..+.+|++||+.+++.+.++.++++|.++|.++.++++.|..++..++...+
T Consensus        82 ~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~~~~~r  133 (136)
T d1ne6a1          82 TSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR  133 (136)
T ss_dssp             EEECTTCEECCHHHHHCCCCCSEEEESSCEEEEEEEHHHHHHHTHHHHHHHH
T ss_pred             ceeccccccccHHHcCCCcceEEEEEccCEEEEEEEHHHHHHHHhhCHHHHH
Confidence            7789999999999999999999999999999999999999999998876543

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=4.2e-19  Score=141.99  Aligned_cols=127  Identities=18%  Similarity=0.290  Sum_probs=113.8

Q ss_pred             HhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecC------CCCeeEeeeecCCC
Q 015680           38 PYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGE------DGSEETVSQLQPNS  111 (403)
Q Consensus        38 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~------~g~~~~~~~~~~G~  111 (403)
                      .+|+++|+|++|+++++.++...++.+.|++|++|+.+|++++.+|+|++|.|+++....      +++...+..+.+|+
T Consensus         2 ~~l~~~p~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~~~~~~i~~~~~g~   81 (147)
T d1cx4a2           2 SFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQ   81 (147)
T ss_dssp             HHHHTCGGGTTSCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEEEEEEEEEEC--------CCEEEEEEECTTC
T ss_pred             hhHhcCHhhcCCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCceeEEEecceEEEEEecCCCccccccceeeeeeccCCc
Confidence            478999999999999999999999999999999999999999999999999999997553      45667789999999


Q ss_pred             cccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhh
Q 015680          112 SFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLE  164 (403)
Q Consensus       112 ~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~  164 (403)
                      +||+.+++.+.++.++++|.++|+++.++++.|..++...++...+.+..+.+
T Consensus        82 ~fGe~~~~~~~~~~~t~~a~~~~~~~~i~~~~f~~ll~~~~~i~~~~~~~~~~  134 (147)
T d1cx4a2          82 YFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEE  134 (147)
T ss_dssp             EESCHHHHHTCCCSSEEEEEEEEEEEEEEHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             EeeehhhcCCCCceEEEEECCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998887766555554444

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=1.3e-19  Score=151.97  Aligned_cols=148  Identities=23%  Similarity=0.353  Sum_probs=133.9

Q ss_pred             ccccceeeeeeeecChhhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEE
Q 015680           12 GRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLE   91 (403)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~   91 (403)
                      ...++.+++..+|..++.++...++.++++++|+|..++...+..+...+....|++|++|+.+|++++.+|||.+|.|.
T Consensus        42 ~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~  121 (193)
T d1q3ea_          42 KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS  121 (193)
T ss_dssp             CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEE
T ss_pred             ccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhhhHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEE
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCeeEeeeecCCCcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhh
Q 015680           92 EVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLE  164 (403)
Q Consensus        92 ~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~  164 (403)
                      ++.  .++.   ...+.+|++||+.+++.+.++.+++.|.++|+++.++++.|.+++..+|.....+...+.+
T Consensus       122 v~~--~~~~---~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~  189 (193)
T d1q3ea_         122 VLT--KGNK---EMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAID  189 (193)
T ss_dssp             EEC---CCC---EEEECTTCEECHHHHHHCSBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred             eec--CCcc---eeeeccceeeeeeeccCCCcccccceecCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            975  2222   3468899999999999999999999999999999999999999999999887777665544

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=99.77  E-value=4.6e-19  Score=140.86  Aligned_cols=122  Identities=15%  Similarity=0.178  Sum_probs=111.5

Q ss_pred             CCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccCCC
Q 015680           44 SLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIP  123 (403)
Q Consensus        44 ~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~  123 (403)
                      .+|+.|++++++.+...+..+.|++|++|+.+|++++.+|+|.+|.|++++.+.+|++.++..+.+|++||+.+++.+.+
T Consensus         7 elf~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~ly~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~   86 (142)
T d2gaua2           7 DVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEET   86 (142)
T ss_dssp             HHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHTSC
T ss_pred             HHHccCCHHHHHHHHhcCEEEEECCCCEEEeCCCccceEEEEEecceeeEeeccccceeeeecccccchhhhhhhhccCC
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          124 QPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       124 ~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      +..+++|.++|+++.++.+.+.+++..+|.....++..+.++
T Consensus        87 ~~~~~~a~~~s~v~~i~~~~~~~l~~~~~~~~~~~~~~l~~r  128 (142)
T d2gaua2          87 CSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKE  128 (142)
T ss_dssp             CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ceeEEEecCCEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888887777654

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

Probab=99.76  E-value=1.3e-18  Score=136.49  Aligned_cols=124  Identities=22%  Similarity=0.310  Sum_probs=113.9

Q ss_pred             hHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccc
Q 015680           36 YMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE  115 (403)
Q Consensus        36 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~  115 (403)
                      ..++|+++|+|+.++++++.++...+..+.|++|++|+.+|++++.+|+|.+|.|+++..+  +     ..+.+|++||+
T Consensus         9 ~~~~l~~~p~F~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~I~~G~v~v~~~~--~-----~~l~~G~~~G~   81 (133)
T d1vp6a_           9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--P-----VELGPGAFFGE   81 (133)
T ss_dssp             HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS--C-----EEECTTCEECH
T ss_pred             HHHHHHCCCccccCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCccceeeeccccEEEEee--e-----eeeccCccccc
Confidence            4588999999999999999999999999999999999999999999999999999997532  2     24789999999


Q ss_pred             cccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhcc
Q 015680          116 VSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEGK  166 (403)
Q Consensus       116 ~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~~  166 (403)
                      .+++.+.++.++++|.++|+++.|+++.|.+++..+|.....++..+.++.
T Consensus        82 ~~~l~~~~~~~~~~a~~~~~i~~i~~~~~~~l~~~~p~~~~~~~~~~~~R~  132 (133)
T d1vp6a_          82 MALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR  132 (133)
T ss_dssp             HHHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_pred             ccccCCCcccceEEECCCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999988888777653

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.2e-17  Score=134.58  Aligned_cols=130  Identities=25%  Similarity=0.299  Sum_probs=116.2

Q ss_pred             hhHHHHHHhHHhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecC--CCCeeEee
Q 015680           28 VRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGE--DGSEETVS  105 (403)
Q Consensus        28 ~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~--~g~~~~~~  105 (403)
                      ++..-.......+++.++|..++++++.++...++.+.|++|++|+++||.++.+|+|.+|.|.++....  +|+...+.
T Consensus        14 Rt~~~~~~i~~~L~~~~~F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~gd~~~~~y~I~~G~v~v~~~~~~~~~~~~~v~   93 (155)
T d1o7fa2          14 RSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTIC   93 (155)
T ss_dssp             CCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGGCEEEE
T ss_pred             CCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEECCCCEEEeCCCcceeeEEEeccchheeeecccccccccccc
Confidence            3344455667899999999999999999999999999999999999999999999999999999886543  46677888


Q ss_pred             eecCCCcccccccccCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHH
Q 015680          106 QLQPNSSFGEVSILCNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKV  158 (403)
Q Consensus       106 ~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~l  158 (403)
                      .+.+|++||+ +++.+.++.++++|.++|+++.++++.|..++.++++....+
T Consensus        94 ~l~~g~~fGe-~~l~~~~~~~tv~a~~~~~l~~i~~~~f~~il~~~~~~~~~l  145 (155)
T d1o7fa2          94 TLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGL  145 (155)
T ss_dssp             EECTTCEECG-GGGGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTT
T ss_pred             cccccccchh-hhhcCCCceEEEEECCCEEEEEEeHHHHHHHHHHCHHHHHHH
Confidence            9999999998 789999999999999999999999999999999998865544

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.5e-17  Score=130.32  Aligned_cols=116  Identities=15%  Similarity=0.238  Sum_probs=107.5

Q ss_pred             CHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccC-CCcceeE
Q 015680           50 SSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCN-IPQPYTV  128 (403)
Q Consensus        50 ~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~-~~~~~~~  128 (403)
                      ++++++.+..+.+.+.|++|++|+++||+.+.+|+|++|.|+++..+.+|++.++..+.+|++||+.+++.+ .++.+++
T Consensus         2 sd~~le~l~~~~~~~~~~~g~~i~~~g~~~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~G~~~~~~~~~~~~~~~   81 (132)
T d1i5za2           2 TDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWV   81 (132)
T ss_dssp             CCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEESCTTTTSSSCBCCSEE
T ss_pred             CHHHHHHHHHhCEEEEECcCCEEEcCCCCCCEEEEEEEccceeeeccccchhhhhhhhCcccccchHHHhcCCccceEEE
Confidence            568899999999999999999999999999999999999999999999999999999999999999988764 6789999


Q ss_pred             EEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          129 RICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       129 ~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      +|.++|+++.++.+.|..++..++.....++..+.++
T Consensus        82 ~a~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~l~~r  118 (132)
T d1i5za2          82 RAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARR  118 (132)
T ss_dssp             EESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred             EEccceEEEEEcHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            9999999999999999999999988888877776553

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.72  E-value=3e-17  Score=128.83  Aligned_cols=114  Identities=15%  Similarity=0.233  Sum_probs=104.9

Q ss_pred             HHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccC----CCccee
Q 015680           52 EFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCN----IPQPYT  127 (403)
Q Consensus        52 ~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~----~~~~~~  127 (403)
                      ++++++...++.+.|++|++|+++|++++.+|+|++|.|+++..+.+|++.++..+.+|++||+..++.+    .+++++
T Consensus         3 ~~le~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~   82 (134)
T d2oz6a2           3 KHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAW   82 (134)
T ss_dssp             HHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCCSE
T ss_pred             HHHHHHHHhCEEEEECCCCEEEeCCCcCCEEEEEEEcccceeeeecccccceeeeccCCCccchHHHhcCccccccceeE
Confidence            6788899999999999999999999999999999999999999999999999999999999999988753    467899


Q ss_pred             EEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          128 VRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       128 ~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      ++|.++|+++.++.+.|.+++..+++....+++.+.++
T Consensus        83 ~~a~~~~~vl~i~~~~~~~~~~~~~~~~~~~~~~~~~r  120 (134)
T d2oz6a2          83 VRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADR  120 (134)
T ss_dssp             EEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             EEECCCEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888888777654

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=99.71  E-value=1e-17  Score=132.37  Aligned_cols=123  Identities=16%  Similarity=0.094  Sum_probs=113.1

Q ss_pred             hhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccc
Q 015680           40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSIL  119 (403)
Q Consensus        40 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll  119 (403)
                      ...+..+..++.++++++.+.+..++|++|++|+.+|++++.+|+|++|.+++++.+.+|++.++..+.+|++||+... 
T Consensus         3 ~~~~~p~~~~p~e~l~~l~~~~~~~~y~kg~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~l~~~~~g~~~g~~~~-   81 (139)
T d3e5ua2           3 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGKLYP-   81 (139)
T ss_dssp             CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCCSC-
T ss_pred             hhhcCCCCCCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCCEEEEEEeccceEEEeeccccccceeeccccceeehhhh-
Confidence            3455667788899999999999999999999999999999999999999999999999999999999999999998553 


Q ss_pred             cCCCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          120 CNIPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       120 ~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                        .++..+++|.++|+++.++.+.|..+++.+|.....+++.++++
T Consensus        82 --~~~~~~~~a~~~~~v~~i~~~~f~~l~~~~p~l~~~il~~~~~r  125 (139)
T d3e5ua2          82 --TGNNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTK  125 (139)
T ss_dssp             --CSCEEEEEESSCEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred             --hcccccccccccceEEEeeHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence              46778999999999999999999999999999999999888875

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=1.1e-16  Score=123.59  Aligned_cols=115  Identities=20%  Similarity=0.294  Sum_probs=102.7

Q ss_pred             HhHHhhhccCCCCCCCHHHHHHHHHHhheee-eCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcc
Q 015680           35 LYMPYIEKVSLFKGCSSEFINQIVIRLHEEF-FLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSF  113 (403)
Q Consensus        35 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~-~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~  113 (403)
                      ...+.|+++|+|+.++++.+.++...+.... +++|++|+++||+++.+|+|++|.|+++..    +......+.+|++|
T Consensus         7 ~i~~~L~~~~~F~~l~~~~l~~l~~~~~~~~~~~~ge~I~~~gd~~~~lyii~~G~v~~~~~----~~~~~~~~~~G~~f   82 (124)
T d1o7fa3           7 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY----GKGVVCTLHEGDDF   82 (124)
T ss_dssp             HHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEET----TTEEEEEEETTCEE
T ss_pred             HHHHHHhCCHhhhcCCHHHHHHHHhhCeEEEEcCCCCEEEECCCcCceEEEEEcceEEEEEe----eeeecccccCCcch
Confidence            4678899999999999999999999998655 568999999999999999999999999862    23456788999999


Q ss_pred             cccccccCCCcceeEEEecc-ceeeeechHhHHHHHHHHhh
Q 015680          114 GEVSILCNIPQPYTVRICEL-SRLLRIDKQSFTSILEIYFC  153 (403)
Q Consensus       114 g~~~ll~~~~~~~~~~a~~~-~~~~~i~~~~~~~l~~~~~~  153 (403)
                      |+.+++.+.++.++++|.++ |+++.++++.|..++...+.
T Consensus        83 Ge~~ll~~~~r~~t~~a~~~~~~l~~i~~~~f~~il~~~~~  123 (124)
T d1o7fa3          83 GKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEA  123 (124)
T ss_dssp             CGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTC
T ss_pred             hhhHhhCCCceeeEEEEEeCcEEEEEEcHHHHHHHHhhccC
Confidence            99999999999999999996 79999999999999988764

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.69  E-value=2.6e-17  Score=129.40  Aligned_cols=117  Identities=15%  Similarity=0.236  Sum_probs=101.7

Q ss_pred             HhhhccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCC-CCeeEeeeecCCCccccc
Q 015680           38 PYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGED-GSEETVSQLQPNSSFGEV  116 (403)
Q Consensus        38 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~-g~~~~~~~~~~G~~~g~~  116 (403)
                      ..|+++|+|+.++++++.++...++.+.|++|++|+++||+.+.+|||.+|.|+++....+ +....+..+.+|++||+.
T Consensus         6 s~l~~vp~F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~ly~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGE~   85 (137)
T d1wgpa_           6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE   85 (137)
T ss_dssp             CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred             HHHHCCHhHhCCCHHHHHHHHHhcEEEEECCCCEEEecccccceeehhccCceEEEEecCCCceeeeeeeccCCcEEcch
Confidence            4689999999999999999999999999999999999999999999999999999875544 334557788999999998


Q ss_pred             cccc---------CCCcceeEEEeccceeeeechHhHHHHHHHHhhc
Q 015680          117 SILC---------NIPQPYTVRICELSRLLRIDKQSFTSILEIYFCD  154 (403)
Q Consensus       117 ~ll~---------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~  154 (403)
                      +++.         ..++.++++|.++|+++.++++.|++++..++..
T Consensus        86 ~ll~~~~~~~~~~~~~r~~tv~a~t~~~l~~L~~~dl~~il~~~~r~  132 (137)
T d1wgpa_          86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRS  132 (137)
T ss_dssp             HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCC
T ss_pred             hHhccCCCcccccccccCcEEEEeeeEEEEEEEHHHHHHHHHHhccc
Confidence            8752         2245679999999999999999999999877554

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: CRP-like transcriptional regulator TM1171, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=7e-17  Score=125.81  Aligned_cols=112  Identities=21%  Similarity=0.269  Sum_probs=103.5

Q ss_pred             HHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccCCC-cceeEEEec
Q 015680           54 INQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIP-QPYTVRICE  132 (403)
Q Consensus        54 ~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~-~~~~~~a~~  132 (403)
                      ++++...++.+.|+||++|+++|++.+++|+|++|.++++..+.+|++.++..+.+|++||+.+++.+.+ +.++++|.+
T Consensus         3 l~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~   82 (129)
T d1o5la1           3 LKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGE   82 (129)
T ss_dssp             GGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSSCBCSSEEEESS
T ss_pred             HHHHHhCCEEEEECCCCEEEECCCcCcEEEEEeccccEEEEeecccccchhhhcccccccchHHHhccCCCccEEEEeec
Confidence            4567788899999999999999999999999999999999999999999999999999999999988776 568999999


Q ss_pred             cceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          133 LSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       133 ~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                      +|+++.|+.+.|..++..++.....+++.+..+
T Consensus        83 ~~~vl~i~~~~~~~~~~~~~~~~~~~~~~l~~~  115 (129)
T d1o5la1          83 NSKILSIPKEVFLDLLMKDRELLLFFLKDVSEH  115 (129)
T ss_dssp             SEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ccEEEEEcHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            999999999999999999999988888877654

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=99.65  E-value=4.6e-17  Score=127.22  Aligned_cols=116  Identities=14%  Similarity=0.098  Sum_probs=107.1

Q ss_pred             ccCCCCCCCHHHHHHHHHHhheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccC
Q 015680           42 KVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCN  121 (403)
Q Consensus        42 ~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~  121 (403)
                      +.++|+.|++++++.+...++.++|+||++|+.+|++++.+|+|++|.++++..+ +|++.++..+.+|++||+.     
T Consensus         3 r~~~~~~L~~~~~~~~~~~~~~~~~~kG~~i~~~g~~~~~ly~v~~G~v~~~~~~-~g~e~~l~~~~~g~~f~~~-----   76 (132)
T d1ft9a2           3 RFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVG-EEREISLFYLTSGDMFCMH-----   76 (132)
T ss_dssp             CCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEE-TTEEEEEEEEETTCEEESC-----
T ss_pred             CcChhHhCCHHHHHHHHHhCEEEEecCCcEEECCCCCCCEEEEEEeCeEeeeccc-cccceeecccccccccccc-----
Confidence            4688999999999999999999999999999999999999999999999999765 5889999999999999864     


Q ss_pred             CCcceeEEEeccceeeeechHhHHHHHHHHhhcchHHHHHhhhc
Q 015680          122 IPQPYTVRICELSRLLRIDKQSFTSILEIYFCDGRKVLTNLLEG  165 (403)
Q Consensus       122 ~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~~~ll~~ll~~  165 (403)
                        ++++++|+++|+++.++++.|.+++..+|.....+++.+..+
T Consensus        77 --~~~~v~A~~~s~v~~i~~~~~~~ll~~~p~~~~~l~~~l~~r  118 (132)
T d1ft9a2          77 --SGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRA  118 (132)
T ss_dssp             --SSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             --ccccceeccceeeeeehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              468999999999999999999999999999999888887764

>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: Listeriolysin regulatory protein PrfA, N-terminal domain
domain: Listeriolysin regulatory protein PrfA, N-terminal domain
species: Bacteria (Listeria monocytogenes) [TaxId: 1639]

Probab=96.48  E-value=0.04  Score=37.04  Aligned_cols=103  Identities=13%  Similarity=0.159  Sum_probs=72.9

Q ss_pred             hheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccCC-Cc-ceeEEEec-cceee
Q 015680           61 LHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNI-PQ-PYTVRICE-LSRLL  137 (403)
Q Consensus        61 ~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~-~~-~~~~~a~~-~~~~~  137 (403)
                      +++..|.+.|+||.+=||.+.+.|+.+|..++...+++|.-..+..++ |.++=...+++.. +- -++.+... ....+
T Consensus        11 ikpk~f~kke~ifnqwdp~eycifl~dgiakltsiseng~imnlqyyk-gafiimsg~idt~~~lgyynlevise~atay   89 (131)
T d2bgca2          11 IKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYK-GAFVIMSGFIDTETSVGYYNLEVISEQATAY   89 (131)
T ss_dssp             CCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEEE-SSEEEESBCTTTCCBSCCCEEEECSSEEEEE
T ss_pred             CChhhhchhheeecccCcceeEEeeecchHHhcccccCCcEEeeeecc-ccEEEEecccccCCccceeeeeeehhcceee
Confidence            478999999999999999999999999999999989999877776664 4433222333222 21 23454443 45678


Q ss_pred             eechHhHHHHHHHHhhcchHHHHHhhh
Q 015680          138 RIDKQSFTSILEIYFCDGRKVLTNLLE  164 (403)
Q Consensus       138 ~i~~~~~~~l~~~~~~~~~~ll~~ll~  164 (403)
                      .+...++.+++..+-..-..+++.+-+
T Consensus        90 vikisdlk~lvs~dl~~~fyi~~tlqk  116 (131)
T d2bgca2          90 VIKINELKELLSKNLTHFFYVFQTLQK  116 (131)
T ss_dssp             EEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             eEEHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            888899999888765555554444433

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.40  E-value=0.54  Score=32.92  Aligned_cols=68  Identities=13%  Similarity=0.075  Sum_probs=48.8

Q ss_pred             hheeeeCCCCeEEecCCccCeEEEEeeeEEEEEeecCCCCeeEeeeecCCCcccccccccCCCcceeEEEeccceeeee
Q 015680           61 LHEEFFLPGEVIMEQGNVIDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVRICELSRLLRI  139 (403)
Q Consensus        61 ~~~~~~~~ge~i~~~g~~~~~~~~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~g~~~ll~~~~~~~~~~a~~~~~~~~i  139 (403)
                      +....+++|+.+-..-.+.+.+++|++|.+.+..   +|+.   ..+.+|+++-.     ....+..+++.+++.++.+
T Consensus        39 i~~~~~~~G~~~~~H~h~~~~~~~vl~G~~~~~~---~~~~---~~l~~Gd~~~i-----p~~~~H~~~a~~~~~~l~~  106 (112)
T d1yhfa1          39 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI---DQET---YRVAEGQTIVM-----PAGIPHALYAVEAFQMLLV  106 (112)
T ss_dssp             EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE---TTEE---EEEETTCEEEE-----CTTSCEEEEESSCEEEEEE
T ss_pred             EEEEEECCCCCcceEECCCCEEEEEEeCEEEEEE---ccEE---EEecCCEEEEc-----CCCCeEEeEECCCcEEEEE
Confidence            3567789999988877778899999999999976   3433   46789886532     1223467778888776654