Citrus Sinensis ID: 015687
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 402 | 2.2.26 [Sep-21-2011] | |||||||
| Q71VM4 | 526 | Importin subunit alpha-1a | yes | no | 0.995 | 0.760 | 0.872 | 0.0 | |
| O22478 | 527 | Importin subunit alpha OS | N/A | no | 0.995 | 0.759 | 0.838 | 0.0 | |
| Q96321 | 532 | Importin subunit alpha-1 | no | no | 0.995 | 0.751 | 0.810 | 0.0 | |
| Q9SLX0 | 534 | Importin subunit alpha-1b | no | no | 0.995 | 0.749 | 0.796 | 0.0 | |
| O04294 | 531 | Importin subunit alpha-2 | no | no | 0.995 | 0.753 | 0.757 | 1e-180 | |
| Q76P29 | 516 | Importin subunit alpha-B | yes | no | 0.975 | 0.759 | 0.638 | 1e-142 | |
| O94374 | 539 | Importin subunit alpha-2 | yes | no | 0.960 | 0.716 | 0.558 | 1e-116 | |
| O35345 | 536 | Importin subunit alpha-7 | yes | no | 0.910 | 0.682 | 0.579 | 1e-116 | |
| O14063 | 542 | Importin subunit alpha-1 | no | no | 0.965 | 0.715 | 0.567 | 1e-116 | |
| Q0V7M0 | 536 | Importin subunit alpha-7 | yes | no | 0.910 | 0.682 | 0.579 | 1e-116 |
| >sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/401 (87%), Positives = 375/401 (93%), Gaps = 1/401 (0%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
MSLRP+ R EVRR++YKVAVDAEEGRRRREDNMVEIRK++REESLLKKRREGLQA P+
Sbjct: 1 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 60
Query: 61 NSAALD-NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
SAA +KKLESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF
Sbjct: 61 ASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 120
Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
++FL+R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVW
Sbjct: 121 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW 180
Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
ALGNVAGDSPKCRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQT
Sbjct: 181 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 240
Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
RPALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSV
Sbjct: 241 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 300
Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
LIPALRTVGNIVTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +
Sbjct: 301 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 360
Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
QIQA+I AGIIGPLVNLL AEF+IKKEAAWAISNATSGGS
Sbjct: 361 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGS 401
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Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2 | Back alignment and function description |
|---|
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/402 (83%), Positives = 371/402 (92%), Gaps = 2/402 (0%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
MSLRPN+RTE RRS+YKVAVDAEEGRRRREDNMVEIRKNKREE+LLKKRREGL Q
Sbjct: 1 MSLRPNSRTEARRSRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLLQAQQFP 60
Query: 61 NSAALD--NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR 118
++AA+ +KKLE+LP ++AGVWSDD ++QL+ TTQFRKLLSIER+PPI EVIQSGVVPR
Sbjct: 61 STAAVSHLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPR 120
Query: 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 178
F+EFL+RDD+PQLQFEAAWALTNIASGTSENT+VVID+G+VPIF+RLLSSP+DDVREQAV
Sbjct: 121 FVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAV 180
Query: 179 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238
WALGN+AGDSPK RDLVL +GAL+ LLAQFNE AKLSMLRNATWTLSNFCRGKPQPLFEQ
Sbjct: 181 WALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFEQ 240
Query: 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 298
T+ ALP L RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVC RLVELL H SPS
Sbjct: 241 TKAALPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLLHSSPS 300
Query: 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358
VLIPALRTVGNIVTGDD+QTQ +I+H ALPCL++LLTQNYKKSIKKEACWTISNITAGN
Sbjct: 301 VLIPALRTVGNIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGNR 360
Query: 359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
NQIQ +IEAGII PLV LL NAEFEIKKEAAWAISNATSGG+
Sbjct: 361 NQIQIVIEAGIIAPLVYLLQNAEFEIKKEAAWAISNATSGGN 402
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Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs. Solanum lycopersicum (taxid: 4081) |
| >sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/401 (81%), Positives = 367/401 (91%), Gaps = 1/401 (0%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPL- 59
MSLRPNA+TEVRR++YKVAVDAEEGRRRREDNMVEIRK+KREESL+KKRREG+QA Q
Sbjct: 1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60
Query: 60 TNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
+ SAA +KKL+SL MVAGVWSDD +QL++TTQFRKLLSIERSPPI EVI +GVVPRF
Sbjct: 61 SASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRF 120
Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
+EFL ++D+P +QFEAAWALTNIASGTS++T+VVIDH AVPIFV+LL+SP+DDVREQAVW
Sbjct: 121 VEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVW 180
Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
ALGNVAGDSP+CRDLVL GAL+PLL Q NEHAKLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 181 ALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQV 240
Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
+PALPALERLIHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+LVELL H SPSV
Sbjct: 241 KPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPSV 300
Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
LIPALRTVGNIVTGDD+QTQC+IN ALPCL +LLTQN+KKSIKKEACWTISNITAGN +
Sbjct: 301 LIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKD 360
Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
QIQ ++EA +I PLV+LL NAEF+IKKEAAWAISNATSGGS
Sbjct: 361 QIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGS 401
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Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/407 (79%), Positives = 359/407 (88%), Gaps = 7/407 (1%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGL------- 53
MSLRP+ R EVRRS+YKVAVDA+EGRRRREDNMVEIRK++REESLLKKRR+GL
Sbjct: 1 MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGLPAAAAAA 60
Query: 54 QAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS 113
A PL ++ +KLE LPAMV V SDD +QL+ATTQFRKLLSIERSPPI EVI +
Sbjct: 61 AAASPLLAHSSALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINT 120
Query: 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDV 173
GVVPRFI FL R+D+PQLQFEAAWALTNIASGTS+NT+VV++ GAVPIFV+LLSSP++DV
Sbjct: 121 GVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDV 180
Query: 174 REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233
REQAVWALGNVAGDSPKCRDLVL++G L PLL Q NEHAKLSMLRNATWTLSNFCRGKPQ
Sbjct: 181 REQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQ 240
Query: 234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 293
P FEQ +PAL AL+RLIHS D+EVLTDACWALSYLSDGTNDKIQAVIE+GV PRLVELL
Sbjct: 241 PNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLM 300
Query: 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353
HPS SVLIPALRTVGNIVTGDDMQTQC+I+HQALPCLL+LLT N+KKSIKKEACWTISNI
Sbjct: 301 HPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNI 360
Query: 354 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
TAGN QIQA+I A II PLV+LL AEF+IKKEAAWAISNATSGG+
Sbjct: 361 TAGNREQIQAVINANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGT 407
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Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 630 bits (1624), Expect = e-180, Method: Compositional matrix adjust.
Identities = 306/404 (75%), Positives = 352/404 (87%), Gaps = 4/404 (0%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
MSLRP+A+TEVRR++YKVAVDAEEGRRRREDN+VEIRKNKREE+L KKR A T
Sbjct: 1 MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60
Query: 61 NSAALD----NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVV 116
D N+ ++LPAMVAG+WS+D N QL+AT RKLLSIE++PPINEV+QSGVV
Sbjct: 61 GQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVV 120
Query: 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ 176
PR ++FLSRDDFP+LQFEAAWALTNIASGTSENT V+I+ GAVPIF++LLSS ++DVREQ
Sbjct: 121 PRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQ 180
Query: 177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
AVWALGNVAGDSPKCRDLVLS GA+ PLL+QFNE+ KLSMLRNATWTLSNFCRGKP P F
Sbjct: 181 AVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAF 240
Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
EQT+PALP LERL+ S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL++LL H S
Sbjct: 241 EQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSS 300
Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
PSVLIPALRT+GNIVTGDD+QTQ +++ QALPCLL+LL NYKKSIKKEACWTISNITAG
Sbjct: 301 PSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAG 360
Query: 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
N +QIQA+I+AGII LV +L +AEFE+KKEAAW ISNATSGG+
Sbjct: 361 NADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGT 404
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Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust.
Identities = 253/396 (63%), Positives = 319/396 (80%), Gaps = 4/396 (1%)
Query: 7 ARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALD 66
++ E R+S+YK ++D++E RR+RE+ + IRKNKREESLLKKR + + P+ +L
Sbjct: 4 SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPV-KVDSLI 62
Query: 67 NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD 126
N++LE LP++VA + S++ ++ L +TT FRKLLSIE+SPPI EVI++G+VPR ++FL
Sbjct: 63 NQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQ 122
Query: 127 DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 186
DFPQLQFEAAWALTNIASGT E TRVVI++GA+ +FV LLSSP DDVREQAVWALGN+AG
Sbjct: 123 DFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIAG 182
Query: 187 DSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 244
DS CRDLVLS+ AL PLL+ A K+SM+RNATWTLSNFCRGKPQP FE R +LP
Sbjct: 183 DSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASLP 242
Query: 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 304
L +LI+ D+EVL DACWALSYLSDG+N++IQ VI+A VC ++VELL HP+ +V PAL
Sbjct: 243 VLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPAL 302
Query: 305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 364
RT+GNIVTGDD QTQ +++ QAL LL+LL Q+ K++I+KEACWTISNITAG+ NQIQ +
Sbjct: 303 RTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQV 361
Query: 365 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
I+A II LV LL NAEFEI+KEAAWAISNATS G+
Sbjct: 362 IDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGT 397
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Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Dictyostelium discoideum (taxid: 44689) |
| >sp|O94374|IMA2_SCHPO Importin subunit alpha-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=imp1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/399 (55%), Positives = 279/399 (69%), Gaps = 13/399 (3%)
Query: 12 RRSKYKV--AVDAEEGRRRREDNMVEIRKNKREESLLKKR------REGLQAHQPLTNSA 63
RRS++K A+E RR+RE+ +EIRK KREESL K+R + + + S
Sbjct: 9 RRSRFKSKGVFKADELRRQREEQQIEIRKQKREESLNKRRNLNAVLQNDIDVEEEADQSQ 68
Query: 64 A-LDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEF 122
++ + + P + A V SDD +QL A T+FRK LS E PPI++VI GVV RF++F
Sbjct: 69 VQMEQQMKDEFPKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIACGVVDRFVQF 128
Query: 123 LSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG 182
L + LQFEAAWALTNIASGT++ TR+V+D GAVP F++LLSSP DVREQ VWALG
Sbjct: 129 LESEHH-LLQFEAAWALTNIASGTTDQTRIVVDSGAVPRFIQLLSSPEKDVREQVVWALG 187
Query: 183 NVAGDSPKCRDLVLSNGALMPLLAQFNEHAK-LSMLRNATWTLSNFCRGK-PQPLFEQTR 240
N+AGDS CRD VL NG L PLL A +SMLRNATWTLSN CRGK P P +
Sbjct: 188 NIAGDSSACRDYVLGNGVLQPLLNILQSSASDVSMLRNATWTLSNLCRGKNPPPNWSTIS 247
Query: 241 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL 300
A+P L +L++S D E++ DACWA+SYLSDG N+KI A+++ G PRLVELL PS ++
Sbjct: 248 VAVPILAKLLYSEDVEIIVDACWAISYLSDGPNEKIGAILDVGCAPRLVELLSSPSVNIQ 307
Query: 301 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 360
PALR+VGNIVTG D QTQ II+ AL LL+ K++I+KEACWTISNITAGN Q
Sbjct: 308 TPALRSVGNIVTGTDAQTQIIIDCGALNAFPSLLSHQ-KENIRKEACWTISNITAGNTQQ 366
Query: 361 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399
IQAIIE+ +I PLV+LL A+++ KKEA WAISNATSGG
Sbjct: 367 IQAIIESNLIPPLVHLLSYADYKTKKEACWAISNATSGG 405
|
Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. Active directional transport is assured by both, a Phe-Gly (FG) repeat affinity gradient for these transport factors across the NPC and a transport cofactor concentration gradient across the nuclear envelope. Involved in nuclear protein import. Required for efficient nuclera import of both an SV40 nuclear localization signal-containing reporter protein and the pap1 component of the stress response MAP kinase pathway. Required for proper mitotic progression. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 218/376 (57%), Positives = 271/376 (72%), Gaps = 10/376 (2%)
Query: 34 VEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPA-------MVAGVWSDDRN 86
+++RK KRE+ L K+R L + + L + + S MV ++SDD +
Sbjct: 36 IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95
Query: 87 IQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145
+QL T +FRKLLS E SPPI+EVI + GVV RF+EFL R++ LQFEAAWALTNIASG
Sbjct: 96 LQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155
Query: 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 205
TS+ T++VI+ GAVPIF+ LL+S +DV+EQAVWALGN+AGDS CRD VL+ L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDYVLNCSILNPLL 215
Query: 206 AQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWA 264
+ +L+M RNA W LSN CRGK P P F + P LP L RL+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275
Query: 265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 324
LSYLSDG N+KIQAVI++GVC RLVELL H V PALR VGNIVTGDD+QTQ I+N
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335
Query: 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384
ALPCLL LL+ + K+SI+KEACWTISNITAGN QIQA+I+A I L+ +L AEF
Sbjct: 336 SALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394
Query: 385 KKEAAWAISNATSGGS 400
+KEAAWAI+NATSGG+
Sbjct: 395 RKEAAWAITNATSGGT 410
|
Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Mus musculus (taxid: 10090) |
| >sp|O14063|IMA1_SCHPO Importin subunit alpha-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut15 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 418 bits (1074), Expect = e-116, Method: Compositional matrix adjust.
Identities = 227/400 (56%), Positives = 283/400 (70%), Gaps = 12/400 (3%)
Query: 10 EVRRSKYKV--AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDN 67
E RR YK A+E RRRRE +EIRK KREE+L KRR + +P + L+
Sbjct: 10 EHRRQNYKGKGTFQADELRRRRETQQIEIRKQKREENL-NKRRNLVDVQEPAEETIPLEQ 68
Query: 68 KK-----LE-SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIE 121
K LE LP ++ ++SDD Q+ AT +FRK LS E +PPI +VI +GVVPRF+E
Sbjct: 69 DKENDLELELQLPDLLKALYSDDIEAQIQATAKFRKALSKETNPPIQKVIDAGVVPRFVE 128
Query: 122 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWAL 181
FLS ++ L+FEA+WALTN+ASG+S T VV++ AVP+FV LLSS DVREQAVWAL
Sbjct: 129 FLSHEN-NLLKFEASWALTNVASGSSNQTHVVVEANAVPVFVSLLSSSEQDVREQAVWAL 187
Query: 182 GNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTR 240
GN+AGDSP CRD VL G L PLL + +LSMLRN+TWTLSN CRGK PQP +
Sbjct: 188 GNIAGDSPMCRDHVLQCGVLEPLLNIIESNRRLSMLRNSTWTLSNMCRGKNPQPDWNSIS 247
Query: 241 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL 300
+P L +LI++ D++VL DA WA+SYLSDG N+KIQA+I+AG+ RLVELL HPS V
Sbjct: 248 QVIPVLSKLIYTLDEDVLVDALWAISYLSDGANEKIQAIIDAGIPRRLVELLMHPSAQVQ 307
Query: 301 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 360
PALR+VGNIVTGDD+QTQ IIN L L + + ++KEACWTISNITAGN +Q
Sbjct: 308 TPALRSVGNIVTGDDVQTQVIINC-GALSALLSLLSSPRDGVRKEACWTISNITAGNSSQ 366
Query: 361 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
IQ +IEA II PL++LL A+F+I+KEA WAISNATSGG+
Sbjct: 367 IQYVIEANIIPPLIHLLTTADFKIQKEACWAISNATSGGA 406
|
Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs. Has an essential role in mitotic chromosome condensation. Involved in nuclear protein import. Required for efficient nuclear import of both an SV40 nuclear localization signal-containing reporter protein and the pap1 component of the stress response MAP kinase pathway. Required for proper mitotic progression. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust.
Identities = 218/376 (57%), Positives = 271/376 (72%), Gaps = 10/376 (2%)
Query: 34 VEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPA-------MVAGVWSDDRN 86
+++RK KRE+ L K+R L + + L + + S MV ++SDD +
Sbjct: 36 IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDPD 95
Query: 87 IQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145
+QL T +FRKLLS E SPPI+EVI + GVV RF+EFL R++ LQFEAAWALTNIASG
Sbjct: 96 LQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155
Query: 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 205
TS+ T++VI+ GAVPIF+ LL+S +DV+EQAVWALGN+AGDS CRD VL+ L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215
Query: 206 AQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWA 264
+ +L+M RNA W LSN CRGK P P F + P LP L RL+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275
Query: 265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 324
LSYLSDG N+KIQAVI++GVC RLVELL H V PALR VGNIVTGDD+QTQ I+N
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTGDDIQTQVILNC 335
Query: 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384
ALPCLL LL+ + K+SI+KEACWTISNITAGN QIQA+I+A I L+ +L AEF
Sbjct: 336 SALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394
Query: 385 KKEAAWAISNATSGGS 400
+KEAAWAI+NATSGG+
Sbjct: 395 RKEAAWAITNATSGGT 410
|
Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Bos taurus (taxid: 9913) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 402 | ||||||
| 255542844 | 531 | importin alpha, putative [Ricinus commun | 0.990 | 0.749 | 0.880 | 0.0 | |
| 118488338 | 419 | unknown [Populus trichocarpa] | 0.995 | 0.954 | 0.867 | 0.0 | |
| 125525217 | 526 | hypothetical protein OsI_01208 [Oryza sa | 0.995 | 0.760 | 0.875 | 0.0 | |
| 224128392 | 538 | predicted protein [Populus trichocarpa] | 0.995 | 0.743 | 0.867 | 0.0 | |
| 440690795 | 528 | Chain A, Rimp_alpha1a | 0.995 | 0.757 | 0.872 | 0.0 | |
| 115435706 | 526 | Os01g0253300 [Oryza sativa Japonica Grou | 0.995 | 0.760 | 0.872 | 0.0 | |
| 33337497 | 526 | importin [Oryza sativa] | 0.995 | 0.760 | 0.872 | 0.0 | |
| 225437493 | 529 | PREDICTED: importin subunit alpha [Vitis | 0.995 | 0.756 | 0.875 | 0.0 | |
| 356564581 | 530 | PREDICTED: importin subunit alpha-1-like | 0.987 | 0.749 | 0.870 | 0.0 | |
| 225450645 | 527 | PREDICTED: importin subunit alpha-1 isof | 0.995 | 0.759 | 0.867 | 0.0 |
| >gi|255542844|ref|XP_002512485.1| importin alpha, putative [Ricinus communis] gi|223548446|gb|EEF49937.1| importin alpha, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/403 (88%), Positives = 381/403 (94%), Gaps = 5/403 (1%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPL- 59
MSLRP+ARTEVRR++YKVAVDAEEGRRRREDNMVEIRKN+REESL KKRREGLQA QP+
Sbjct: 1 MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQA-QPMP 59
Query: 60 --TNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVP 117
+S+A++ KKLE LP+MVAGVWSDD N+QL+ATTQFRKLLSIERSPPI EVIQ+GVVP
Sbjct: 60 ASLHSSAVE-KKLEHLPSMVAGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVP 118
Query: 118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 177
RF+EFL R+DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV+LL+SP+DDVREQA
Sbjct: 119 RFVEFLMREDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVKLLASPSDDVREQA 178
Query: 178 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 237
VWALGNVAGDSPKCRDLVL NGAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP FE
Sbjct: 179 VWALGNVAGDSPKCRDLVLGNGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPFFE 238
Query: 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 297
Q +PALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP
Sbjct: 239 QVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 298
Query: 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL+LLT NYKKSIKKEACWTISNITAGN
Sbjct: 299 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGN 358
Query: 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
QIQA+IEA IIGPLV+LL NAEF+IKKEAAWAISNATSGG+
Sbjct: 359 KEQIQAVIEANIIGPLVHLLENAEFDIKKEAAWAISNATSGGT 401
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118488338|gb|ABK95987.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/408 (86%), Positives = 382/408 (93%), Gaps = 8/408 (1%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQP-- 58
MSLRPNAR EVRR+KYKVAVDA+EGRRRREDN+VEIRKNKREESLLKKRREGLQA Q
Sbjct: 1 MSLRPNARVEVRRNKYKVAVDADEGRRRREDNLVEIRKNKREESLLKKRREGLQAQQQQQ 60
Query: 59 ----LTNSAALD--NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQ 112
+T+S + +K L++LPAM+AGVWSDD+NIQ + TT FRKLLSIERSPPINEVIQ
Sbjct: 61 QQQQVTSSLNISASDKPLDTLPAMIAGVWSDDKNIQFEGTTHFRKLLSIERSPPINEVIQ 120
Query: 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 172
SGVVPRFIEFL+RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA+PIFV+LLSSP +D
Sbjct: 121 SGVVPRFIEFLARDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAIPIFVKLLSSPAED 180
Query: 173 VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232
VREQAVWALGNVAGDSPKCRDLVL +GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP
Sbjct: 181 VREQAVWALGNVAGDSPKCRDLVLGHGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 240
Query: 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292
QPLF+QT+PALPALERLIHSND+EVLTDACWALSYLSDG+N+KIQAVIEAGVCPRLVELL
Sbjct: 241 QPLFDQTKPALPALERLIHSNDNEVLTDACWALSYLSDGSNEKIQAVIEAGVCPRLVELL 300
Query: 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352
RH SP+VLIPALR VGNIVTGDDMQTQC+INHQALPCLL+LLT NYKKSIKKEACWTISN
Sbjct: 301 RHQSPTVLIPALRAVGNIVTGDDMQTQCMINHQALPCLLNLLTNNYKKSIKKEACWTISN 360
Query: 353 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
+TAGN NQIQA++EAGIIGPLV LL NAEFEIKKEAAWAISNATSGGS
Sbjct: 361 VTAGNANQIQAVLEAGIIGPLVQLLQNAEFEIKKEAAWAISNATSGGS 408
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125525217|gb|EAY73331.1| hypothetical protein OsI_01208 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/401 (87%), Positives = 376/401 (93%), Gaps = 1/401 (0%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
MSLRP+ R EVRR++YKVAVDAEEGRRRREDNMVEIRK++REESLLKKRREGLQA P+
Sbjct: 1 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 60
Query: 61 NSAALD-NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
SAA +KKLESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF
Sbjct: 61 ASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 120
Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
++FL+R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVW
Sbjct: 121 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW 180
Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
ALGNVAGDSPKCRDLVL+NGAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP FEQT
Sbjct: 181 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPSFEQT 240
Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
RPALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSV
Sbjct: 241 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 300
Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
LIPALRTVGNIVTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +
Sbjct: 301 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 360
Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
QIQA+I AGIIGPLVNLL AEF+IKKEAAWAISNATSGGS
Sbjct: 361 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGS 401
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128392|ref|XP_002320318.1| predicted protein [Populus trichocarpa] gi|222861091|gb|EEE98633.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/408 (86%), Positives = 382/408 (93%), Gaps = 8/408 (1%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQP-- 58
MSLRPNAR EVRR+KYKVAVDA+EGRRRREDN+VEIRKNKREESLLKKRREGLQA Q
Sbjct: 1 MSLRPNARVEVRRNKYKVAVDADEGRRRREDNLVEIRKNKREESLLKKRREGLQAQQQQQ 60
Query: 59 ----LTNSAALD--NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQ 112
+T+S + +K L++LPAM+AGVWSDD+NIQ + TT FRKLLSIERSPPINEVIQ
Sbjct: 61 QQQQVTSSLNISASDKPLDTLPAMIAGVWSDDKNIQFEGTTHFRKLLSIERSPPINEVIQ 120
Query: 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 172
SGVVPRFIEFL+RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA+PIFV+LLSSP +D
Sbjct: 121 SGVVPRFIEFLARDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAIPIFVKLLSSPAED 180
Query: 173 VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232
VREQAVWALGNVAGDSPKCRDLVL +GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP
Sbjct: 181 VREQAVWALGNVAGDSPKCRDLVLGHGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 240
Query: 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292
QPLF+QT+PALPALERLIHSND+EVLTDACWALSYLSDG+N+KIQAVIEAGVCPRLVELL
Sbjct: 241 QPLFDQTKPALPALERLIHSNDNEVLTDACWALSYLSDGSNEKIQAVIEAGVCPRLVELL 300
Query: 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352
RH SP+VLIPALR VGNIVTGDDMQTQC+INHQALPCLL+LLT NYKKSIKKEACWTISN
Sbjct: 301 RHQSPTVLIPALRAVGNIVTGDDMQTQCMINHQALPCLLNLLTNNYKKSIKKEACWTISN 360
Query: 353 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
+TAGN NQIQA++EAGIIGPLV LL NAEFEIKKEAAWAISNATSGGS
Sbjct: 361 VTAGNANQIQAVLEAGIIGPLVQLLQNAEFEIKKEAAWAISNATSGGS 408
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|440690795|pdb|4B8J|A Chain A, Rimp_alpha1a | Back alignment and taxonomy information |
|---|
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/401 (87%), Positives = 375/401 (93%), Gaps = 1/401 (0%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
MSLRP+ R EVRR++YKVAVDAEEGRRRREDNMVEIRK++REESLLKKRREGLQA P+
Sbjct: 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 62
Query: 61 NSAALD-NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
SAA +KKLESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF
Sbjct: 63 ASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 122
Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
++FL+R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVW
Sbjct: 123 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW 182
Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
ALGNVAGDSPKCRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQT
Sbjct: 183 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 242
Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
RPALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSV
Sbjct: 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 302
Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
LIPALRTVGNIVTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +
Sbjct: 303 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 362
Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
QIQA+I AGIIGPLVNLL AEF+IKKEAAWAISNATSGGS
Sbjct: 363 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGS 403
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115435706|ref|NP_001042611.1| Os01g0253300 [Oryza sativa Japonica Group] gi|62900360|sp|Q71VM4.2|IMA1A_ORYSJ RecName: Full=Importin subunit alpha-1a gi|3273243|dbj|BAA31165.1| NLS receptor [Oryza sativa] gi|3273245|dbj|BAA31166.1| NLS receptor [Oryza sativa Japonica Group] gi|6498466|dbj|BAA87855.1| putative importin alpha 2 [Oryza sativa Japonica Group] gi|113532142|dbj|BAF04525.1| Os01g0253300 [Oryza sativa Japonica Group] gi|125569759|gb|EAZ11274.1| hypothetical protein OsJ_01128 [Oryza sativa Japonica Group] gi|215687001|dbj|BAG90815.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/401 (87%), Positives = 375/401 (93%), Gaps = 1/401 (0%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
MSLRP+ R EVRR++YKVAVDAEEGRRRREDNMVEIRK++REESLLKKRREGLQA P+
Sbjct: 1 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 60
Query: 61 NSAALD-NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
SAA +KKLESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF
Sbjct: 61 ASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 120
Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
++FL+R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVW
Sbjct: 121 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW 180
Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
ALGNVAGDSPKCRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQT
Sbjct: 181 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 240
Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
RPALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSV
Sbjct: 241 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 300
Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
LIPALRTVGNIVTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +
Sbjct: 301 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 360
Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
QIQA+I AGIIGPLVNLL AEF+IKKEAAWAISNATSGGS
Sbjct: 361 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGS 401
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|33337497|gb|AAQ13406.1|AF005265_1 importin [Oryza sativa] | Back alignment and taxonomy information |
|---|
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/401 (87%), Positives = 375/401 (93%), Gaps = 1/401 (0%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
MSLRP+ R EVRR++YKVAVDAEEGRRRREDNMVEIRK++REESLLKKRREGLQA P+
Sbjct: 1 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 60
Query: 61 NSAALD-NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
SAA +KKLESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF
Sbjct: 61 ASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 120
Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
++FL+R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVW
Sbjct: 121 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW 180
Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
ALGNVAGDSPKCRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQT
Sbjct: 181 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 240
Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
RPALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSV
Sbjct: 241 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 300
Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
LIPALRTVGNIVTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +
Sbjct: 301 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 360
Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
QIQA+I AGIIGPLVNLL AEF+IKKEAAWAISNATSGGS
Sbjct: 361 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGS 401
|
Source: Oryza sativa Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437493|ref|XP_002274422.1| PREDICTED: importin subunit alpha [Vitis vinifera] gi|147778789|emb|CAN75951.1| hypothetical protein VITISV_028605 [Vitis vinifera] gi|297743948|emb|CBI36918.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/401 (87%), Positives = 376/401 (93%), Gaps = 1/401 (0%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
MSLRP+ARTEVRR++YKVAVDAEEGRRRREDN+VEIRKNKREESL KKRREGLQA Q T
Sbjct: 1 MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREESLQKKRREGLQAQQFTT 60
Query: 61 N-SAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
SA+ +KLESLPAMVAGVWS+D N+QL+ATT FRKLLSIERSPPINEVIQSGVVPR
Sbjct: 61 PVSASTFERKLESLPAMVAGVWSEDSNLQLEATTYFRKLLSIERSPPINEVIQSGVVPRL 120
Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
+EFL RDDFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S DDVREQAVW
Sbjct: 121 VEFLGRDDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSQNDDVREQAVW 180
Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
ALGNVAGDSPKCRDLVL +GALMPL+AQFNEHAKLSMLRNATWTLSNFCRGKPQP FEQT
Sbjct: 181 ALGNVAGDSPKCRDLVLGHGALMPLMAQFNEHAKLSMLRNATWTLSNFCRGKPQPQFEQT 240
Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
+PALPALERLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSV
Sbjct: 241 KPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 300
Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
LIPALRTVGNIVTGDD+QTQCIIN+ ALPCLL+LL+ NYKKSIKKEACWTISNITAGN +
Sbjct: 301 LIPALRTVGNIVTGDDIQTQCIINYGALPCLLNLLSHNYKKSIKKEACWTISNITAGNKD 360
Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
QIQ++IEAGII PL+ LL NAEFEIKKEAAWAISNATSGG+
Sbjct: 361 QIQSVIEAGIIPPLIYLLQNAEFEIKKEAAWAISNATSGGT 401
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564581|ref|XP_003550530.1| PREDICTED: importin subunit alpha-1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/403 (87%), Positives = 376/403 (93%), Gaps = 6/403 (1%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQ--- 57
MSLRPNARTE+RR++YKVAVDA+EGRRRREDNMVEIRK+KREESLLKKRREGLQA Q
Sbjct: 1 MSLRPNARTEIRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQQFP 60
Query: 58 -PLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVV 116
PL NS +KKLESLPAMVAGVWSDD +IQL+ATTQFRKLLSIERSPPI EVIQ+GVV
Sbjct: 61 APLQNSTV--DKKLESLPAMVAGVWSDDNSIQLEATTQFRKLLSIERSPPIEEVIQAGVV 118
Query: 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ 176
PRF+EFL R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LLSSP+DDVREQ
Sbjct: 119 PRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQ 178
Query: 177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
AVWALGNVAGDSP+CRDLVLS GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP F
Sbjct: 179 AVWALGNVAGDSPRCRDLVLSQGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 238
Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
EQ RPALPALERL+ SND+EVLTDACWALSYLSDGTNDKIQAVIEAGVC RLV+LL HPS
Sbjct: 239 EQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCARLVQLLIHPS 298
Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
PSVLIPALRTVGNIVTGDDMQTQCIINH ALPCLL+LLT N+KKSIKKEACWTISNITAG
Sbjct: 299 PSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAG 358
Query: 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399
N QIQ +IEAG++ PLVNLL NAEF+IKKEAAWAISNATSGG
Sbjct: 359 NKEQIQTVIEAGLVAPLVNLLQNAEFDIKKEAAWAISNATSGG 401
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450645|ref|XP_002282816.1| PREDICTED: importin subunit alpha-1 isoform 1 [Vitis vinifera] gi|296089748|emb|CBI39567.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/401 (86%), Positives = 376/401 (93%), Gaps = 1/401 (0%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQ-PL 59
MSLRP+ARTEVRR++YKV+VDAEEGRRRREDNMVEIRKN+REESL KKRREGLQA P
Sbjct: 1 MSLRPSARTEVRRNRYKVSVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQAQTLPA 60
Query: 60 TNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
+ +A KKLE LP+MVAGVW+DD NIQL+ATTQFRKLLSIER PPI EVIQSGVVPRF
Sbjct: 61 SIHSAAVEKKLEFLPSMVAGVWTDDSNIQLEATTQFRKLLSIERCPPIEEVIQSGVVPRF 120
Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
+EFL R+DFPQLQFEAAWALTNIASGTS+NT+VVIDHGAVP+FV+LL SP+DDVREQAVW
Sbjct: 121 VEFLVREDFPQLQFEAAWALTNIASGTSDNTKVVIDHGAVPVFVKLLGSPSDDVREQAVW 180
Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
ALGNVAGDSP+CRDLVL +GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP F+QT
Sbjct: 181 ALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQT 240
Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
+PALPALERLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSV
Sbjct: 241 KPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 300
Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
LIPALRTVGNIVTGDDMQTQCIINHQALPCLL+LLT N+KKSIKKEACWTISNITAGN
Sbjct: 301 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNKE 360
Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
QIQA+IEA IIGPLV+LL NAEF+IKKEAAWAISNATSGGS
Sbjct: 361 QIQAVIEANIIGPLVHLLQNAEFDIKKEAAWAISNATSGGS 401
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 402 | ||||||
| TAIR|locus:505006475 | 535 | IMPA-2 "importin alpha isoform | 0.992 | 0.745 | 0.803 | 2.1e-171 | |
| TAIR|locus:2083313 | 532 | IMPA-1 "importin alpha isoform | 0.992 | 0.75 | 0.793 | 7.4e-169 | |
| TAIR|locus:2132238 | 531 | MOS6 "MODIFIER OF SNC1, 6" [Ar | 0.995 | 0.753 | 0.735 | 1.4e-156 | |
| TAIR|locus:2196140 | 539 | IMPA-6 "importin alpha isoform | 0.995 | 0.742 | 0.736 | 7.2e-155 | |
| TAIR|locus:2195351 | 538 | IMPA-4 "AT1G09270" [Arabidopsi | 0.995 | 0.743 | 0.735 | 8.2e-154 | |
| TAIR|locus:2155929 | 519 | IMPA-5 "importin alpha isoform | 0.985 | 0.763 | 0.627 | 5e-131 | |
| DICTYBASE|DDB_G0272318 | 516 | DDB_G0272318 "putative importi | 0.975 | 0.759 | 0.618 | 3e-124 | |
| TAIR|locus:2078122 | 528 | IMPA-7 "importin alpha isoform | 0.945 | 0.719 | 0.636 | 1.9e-122 | |
| UNIPROTKB|G4MZS0 | 551 | MGG_15072 "Importin subunit al | 0.965 | 0.704 | 0.622 | 1.8e-117 | |
| ASPGD|ASPL0000045550 | 553 | kapA [Emericella nidulans (tax | 0.965 | 0.701 | 0.608 | 6.2e-117 |
| TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1666 (591.5 bits), Expect = 2.1e-171, P = 2.1e-171
Identities = 327/407 (80%), Positives = 364/407 (89%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQ--- 57
MSLRPNA+TEVRR++YKVAVDAEEGRRRREDNMVEIRK+KREESL KKRREGLQA+Q
Sbjct: 1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQANQLPQ 60
Query: 58 ----PLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS 113
P+ S+ ++ KKLESLPAMV GVWSDDR++QL+ATTQFRKLLSIERSPPI EVI +
Sbjct: 61 FAPSPVPASSTVE-KKLESLPAMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDA 119
Query: 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDV 173
GVVPRF+EFL+R+D+PQLQFEAAWALTNIASGTSENT+VVI+HGAVPIFV+LL+S +DDV
Sbjct: 120 GVVPRFVEFLTREDYPQLQFEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDV 179
Query: 174 REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233
REQAVWALGNVAGDSP+CRDLVL GAL+PLL+Q NEHAKLSMLRNATWTLSNFCRGKPQ
Sbjct: 180 REQAVWALGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQ 239
Query: 234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 293
P F+Q RPALPALERLIHS D+EVLTDACWALSYLSDGTNDKIQ+VIEAGV PRLVELL+
Sbjct: 240 PPFDQVRPALPALERLIHSTDEEVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVELLQ 299
Query: 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353
H SPSVLIPALR++GNIVTGDD+QTQC+I+H AL LL LLT N+KKSIKKEACWTISNI
Sbjct: 300 HQSPSVLIPALRSIGNIVTGDDLQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTISNI 359
Query: 354 TAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
TAGN + PLVNLL NAEF+IKKEAAWAISNATSGGS
Sbjct: 360 TAGNRDQIQAVCEAGLICPLVNLLQNAEFDIKKEAAWAISNATSGGS 406
|
|
| TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1642 (583.1 bits), Expect = 7.4e-169, P = 7.4e-169
Identities = 319/402 (79%), Positives = 360/402 (89%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQ--P 58
MSLRPNA+TEVRR++YKVAVDAEEGRRRREDNMVEIRK+KREESL+KKRREG+QA Q P
Sbjct: 1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60
Query: 59 LTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR 118
++A++D KKL+SL MVAGVWSDD +QL++TTQFRKLLSIERSPPI EVI +GVVPR
Sbjct: 61 SASAASVD-KKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPR 119
Query: 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 178
F+EFL ++D+P +QFEAAWALTNIASGTS++T+VVIDH AVPIFV+LL+SP+DDVREQAV
Sbjct: 120 FVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAV 179
Query: 179 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238
WALGNVAGDSP+CRDLVL GAL+PLL Q NEHAKLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 180 WALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQ 239
Query: 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 298
+PALPALERLIHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+LVELL H SPS
Sbjct: 240 VKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPS 299
Query: 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358
VLIPALRTVGNIVTGDD+QTQC+IN ALPCL +LLTQN+KKSIKKEACWTISNITAGN
Sbjct: 300 VLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNK 359
Query: 359 NXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
+ PLV+LL NAEF+IKKEAAWAISNATSGGS
Sbjct: 360 DQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGS 401
|
|
| TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1526 (542.2 bits), Expect = 1.4e-156, P = 1.4e-156
Identities = 297/404 (73%), Positives = 341/404 (84%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
MSLRP+A+TEVRR++YKVAVDAEEGRRRREDN+VEIRKNKREE+L KKR A T
Sbjct: 1 MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60
Query: 61 NSAALD----NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVV 116
D N+ ++LPAMVAG+WS+D N QL+AT RKLLSIE++PPINEV+QSGVV
Sbjct: 61 GQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVV 120
Query: 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ 176
PR ++FLSRDDFP+LQFEAAWALTNIASGTSENT V+I+ GAVPIF++LLSS ++DVREQ
Sbjct: 121 PRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQ 180
Query: 177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
AVWALGNVAGDSPKCRDLVLS GA+ PLL+QFNE+ KLSMLRNATWTLSNFCRGKP P F
Sbjct: 181 AVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAF 240
Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
EQT+PALP LERL+ S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL++LL H S
Sbjct: 241 EQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSS 300
Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
PSVLIPALRT+GNIVTGDD+QTQ +++ QALPCLL+LL NYKKSIKKEACWTISNITAG
Sbjct: 301 PSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAG 360
Query: 357 NVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
N + LV +L +AEFE+KKEAAW ISNATSGG+
Sbjct: 361 NADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGT 404
|
|
| TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1510 (536.6 bits), Expect = 7.2e-155, P = 7.2e-155
Identities = 299/406 (73%), Positives = 347/406 (85%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQ---AHQ 57
MS +P+A+TEVRR++YKV+VDA+EGRRRREDNMVEIRKNKREE+L KKRREG A Q
Sbjct: 1 MSYKPSAKTEVRRNRYKVSVDADEGRRRREDNMVEIRKNKREENLQKKRREGFNPSMASQ 60
Query: 58 PLTN-SAALDNK-KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGV 115
P + S++L + +LE++ M+AGV S+DR++QL+AT FR+LLSIER+PPINEV+QSGV
Sbjct: 61 PGQDFSSSLPTETRLENIQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGV 120
Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
VP ++FLSRDDF QLQFEAAWALTNIASGTSENTRV+ID GAVP+FV+LLSS +++VRE
Sbjct: 121 VPHIVQFLSRDDFTQLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVRE 180
Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
QAVWALGNVAGDSPKCRD VLS A+M LLAQF+EH+KLSMLRNATWTLSNFCRGKPQP
Sbjct: 181 QAVWALGNVAGDSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPA 240
Query: 236 FEQ-TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294
FEQ T+ ALPALERL+HS D+EVLTDA WALSYLSDGTN+KIQ VI+AGV PRLV+LL H
Sbjct: 241 FEQQTKAALPALERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAH 300
Query: 295 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354
PSPSVLIPALRT+GNIVTGDD+QTQ +I+ QALP LL+LL YKKSIKKEACWTISNIT
Sbjct: 301 PSPSVLIPALRTIGNIVTGDDIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNIT 360
Query: 355 AGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
AGN + PL+NLL EFEIKKEA WAISNATSGG+
Sbjct: 361 AGNTSQIQEVFQAGIIRPLINLLEIGEFEIKKEAVWAISNATSGGN 406
|
|
| TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1500 (533.1 bits), Expect = 8.2e-154, P = 8.2e-154
Identities = 300/408 (73%), Positives = 336/408 (82%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
MSLRP+ R E+R+ YK VDA+E RRRREDN+VEIRKNKRE+SLLKKRREG+ Q L
Sbjct: 1 MSLRPSTRAELRKKIYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLP 60
Query: 61 NSAALDN--------KKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQ 112
A LD K+LE +P MV GV+SDD QL+ATTQFRKLLSIERSPPI+EVI+
Sbjct: 61 LGAGLDGPQTAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIK 120
Query: 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 172
+GV+PRF+EFL R D PQLQFEAAWALTN+ASGTS++TRVVI+ GAVPIFV+LL+S +DD
Sbjct: 121 AGVIPRFVEFLGRHDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDD 180
Query: 173 VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232
VREQAVWALGNVAGDSP CR+LVL+ GAL PLLAQ NE++KLSMLRNATWTLSNFCRGKP
Sbjct: 181 VREQAVWALGNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKP 240
Query: 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292
FEQ +PALP L +LI+ ND+EVLTDACWALSYLSDG NDKIQAVIEAGVCPRLVELL
Sbjct: 241 PTPFEQVKPALPILRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL 300
Query: 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352
H SP+VLIPALRTVGNIVTGDD QTQ II LP L +LLTQN+KKSIKKEACWTISN
Sbjct: 301 GHQSPTVLIPALRTVGNIVTGDDSQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISN 360
Query: 353 ITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
ITAGN PLV+LL NAEF+IKKEAAWAISNATSGGS
Sbjct: 361 ITAGNKLQIEAVVGAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGS 408
|
|
| TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1285 (457.4 bits), Expect = 5.0e-131, P = 5.0e-131
Identities = 253/403 (62%), Positives = 314/403 (77%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
MSLRP+ +TE+RR +YKV+VDAEEGRRRRED +VEIRK+KR E+L+KKRR ++ P
Sbjct: 1 MSLRPSTKTEIRRIRYKVSVDAEEGRRRREDFLVEIRKSKRNENLMKKRR--VKVLPP-- 56
Query: 61 NSAALDNKKLESL---PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVP 117
+ + N ESL M+ GV+SDD ++QL+ TT+FR +LS +RSPP + VI+SGVVP
Sbjct: 57 DYKLISNDPFESLLEIANMITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVVP 116
Query: 118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 177
RF+EFL +DD P+LQFEAAWALTNIASG SE+T+VVIDHG VP+FV+LL+SP DDVREQA
Sbjct: 117 RFVEFLKKDDNPKLQFEAAWALTNIASGASEHTKVVIDHGVVPLFVQLLASPDDDVREQA 176
Query: 178 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 237
+W LGNVAGDS +CRD VL++GA +PLL Q N HA LS+LRNATWTLSNF RGKP P F+
Sbjct: 177 IWGLGNVAGDSIQCRDFVLNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPPFD 236
Query: 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 297
+ LP L+RL++S+D++VL DACWALS LSD +N+ IQ+VIEAGV PRLVELL+H SP
Sbjct: 237 LVKHVLPVLKRLVYSDDEQVLIDACWALSNLSDASNENIQSVIEAGVVPRLVELLQHASP 296
Query: 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
VL+PALR +GNIV+G+ QT C+IN LP L DLLTQN+ + I++EACWTISNITAG
Sbjct: 297 VVLVPALRCIGNIVSGNSQQTHCVINCGVLPVLADLLTQNHMRGIRREACWTISNITAGL 356
Query: 358 VNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
LVNL +AEF+IKKEA WAISNA+ GGS
Sbjct: 357 EEQIQSVIDANLIPSLVNLAQHAEFDIKKEAIWAISNASVGGS 399
|
|
| DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1221 (434.9 bits), Expect = 3.0e-124, P = 3.0e-124
Identities = 245/396 (61%), Positives = 310/396 (78%)
Query: 7 ARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALD 66
++ E R+S+YK ++D++E RR+RE+ + IRKNKREESLLKKR + + P+ + +
Sbjct: 4 SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKVDSLI- 62
Query: 67 NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD 126
N++LE LP++VA + S++ ++ L +TT FRKLLSIE+SPPI EVI++G+VPR ++FL
Sbjct: 63 NQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQ 122
Query: 127 DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 186
DFPQLQFEAAWALTNIASGT E TRVVI++GA+ +FV LLSSP DDVREQAVWALGN+AG
Sbjct: 123 DFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIAG 182
Query: 187 DSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 244
DS CRDLVLS+ AL PLL+ A K+SM+RNATWTLSNFCRGKPQP FE R +LP
Sbjct: 183 DSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASLP 242
Query: 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 304
L +LI+ D+EVL DACWALSYLSDG+N++IQ VI+A VC ++VELL HP+ +V PAL
Sbjct: 243 VLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPAL 302
Query: 305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXX 364
RT+GNIVTGDD QTQ +++ QAL LL+LL Q+ K++I+KEACWTISNITAG+ N
Sbjct: 303 RTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQV 361
Query: 365 XXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
LV LL NAEFEI+KEAAWAISNATS G+
Sbjct: 362 IDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGT 397
|
|
| TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1204 (428.9 bits), Expect = 1.9e-122, P = 1.9e-122
Identities = 249/391 (63%), Positives = 294/391 (75%)
Query: 11 VRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKL 70
VRRS YK VD GRRRRED+MVEIRK KREESLLKKRRE L H P +S LD K
Sbjct: 9 VRRSGYKAVVDGVGGRRRREDDMVEIRKAKREESLLKKRREALP-HSPSADS--LDQK-- 63
Query: 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIER-SPPINEVIQSGVVPRFIEFLSRDDFP 129
+++ +WSD+R++ ++ATTQ R LL E + + EVIQ+G+VPRF+EFL+ DD P
Sbjct: 64 -----LISCIWSDERDLLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLTWDDSP 118
Query: 130 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 189
QLQFEAAWALTNIASGTSENT VVIDHGAV I VRLL+SP D VREQ VWALGN++GDSP
Sbjct: 119 QLQFEAAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISGDSP 178
Query: 190 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 249
+CRD+VL + AL LL Q N AKLSML NA WTLSN CRGKPQP F+Q ALPAL +L
Sbjct: 179 RCRDIVLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPALAQL 238
Query: 250 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309
I +D E+L CWAL YLSDG+N+KIQAVIEA VC RL+ L H SPSV+ PALRT+GN
Sbjct: 239 IRLDDKELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIHRSPSVITPALRTIGN 298
Query: 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 369
IVTG+D QTQ II+ QALPCL++LL +Y K+I+KEACWT+SNITAG +
Sbjct: 299 IVTGNDSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQAVFDADI 358
Query: 370 XXPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
LVNLL N+E ++KKEAAWAI NA +GGS
Sbjct: 359 CPALVNLLQNSEGDVKKEAAWAICNAIAGGS 389
|
|
| UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
Identities = 251/403 (62%), Positives = 293/403 (72%)
Query: 10 EVRRSKYKV--AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTN-SAALD 66
E RR+++K EE RRRRE+ VEIRK KREE+L K+R G A +P + AA D
Sbjct: 8 EHRRTQFKAKNTFKPEELRRRREEQQVEIRKAKREENLAKRRGIGTGADRPGASLGAAPD 67
Query: 67 N--------KKL-ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVP 117
+ +L E LP MV GV+S+ + Q+ ATT+FRKLLS ER+PPI EVI++GVV
Sbjct: 68 SDDDTAPTESQLNEDLPQMVQGVFSESIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVS 127
Query: 118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 177
RF+EFL R +QFEAAWALTNIASG++ T+VVI+ GAVPIFV LL SP DVREQA
Sbjct: 128 RFVEFL-RSPHTLVQFEAAWALTNIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQA 186
Query: 178 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLF 236
VWALGN+AGDSP+CRD VLS GAL PLL + KLSMLRNATWTLSNFCRGK PQP +
Sbjct: 187 VWALGNIAGDSPQCRDYVLSCGALKPLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDW 246
Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
PALP L +L++S DDEVL DACWA+SYLSDG+NDKIQAVIEAG+ RLVELL H S
Sbjct: 247 TTIAPALPVLAKLVYSLDDEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHAS 306
Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
SV PALR+VGNIVTGDD+QTQ IIN ALPCLL LL N K I+KEACWTISNITAG
Sbjct: 307 TSVQTPALRSVGNIVTGDDVQTQVIINCGALPCLLSLLGSN-KDGIRKEACWTISNITAG 365
Query: 357 NVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGG 399
N PL++LL N + + +KEA WAISNATSGG
Sbjct: 366 NSAQIQSVVDANIIPPLIHLLSNGDLKTRKEACWAISNATSGG 408
|
|
| ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1152 (410.6 bits), Expect = 6.2e-117, P = 6.2e-117
Identities = 246/404 (60%), Positives = 294/404 (72%)
Query: 10 EVRRSKYKVAVD--AEEGRRRREDNMVEIRKNKREESLLKKR----REG-------LQAH 56
E RR++YK +E RRRRE+ VEIRK KREE+L K+R R+G + A
Sbjct: 8 EHRRTQYKARNQFRPDELRRRREEQQVEIRKQKREENLAKRRGIQTRDGGIGVGGGMAAA 67
Query: 57 QPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVV 116
+ ++A++++ LP MV GV+SD Q+ ATT+FRKLLS ER+PPI VI++GVV
Sbjct: 68 ESDDEASAIESELNVELPEMVKGVFSDQIEAQIQATTKFRKLLSKERNPPIERVIETGVV 127
Query: 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ 176
RF+EFL R +QFEAAWALTNIASG+++ T+VVI+ GAVPIFV LLSSP DVREQ
Sbjct: 128 SRFVEFL-RSPHTLVQFEAAWALTNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQ 186
Query: 177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL 235
AVWALGN+AGDSP+CRD VL+ GAL PLL N+ K+SMLRNATWTLSNFCRGK PQP
Sbjct: 187 AVWALGNIAGDSPQCRDFVLNAGALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPD 246
Query: 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 295
+ PALP L +LI+ DDEVL DACWA+SYLSDG N+KIQAVIEAG+ RLVELL H
Sbjct: 247 WNTIAPALPVLAKLIYMLDDEVLIDACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHA 306
Query: 296 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355
S SV PALR+VGNIVTGDD+QTQ IIN ALP LL LL+ K I+KEACWTISNITA
Sbjct: 307 STSVQTPALRSVGNIVTGDDVQTQVIINCGALPALLSLLSST-KDGIRKEACWTISNITA 365
Query: 356 GNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGG 399
GN + PLV+LL N +F+ +KEA WAISNATSGG
Sbjct: 366 GNSSQIQSVIDAGIIPPLVHLLANGDFKTRKEACWAISNATSGG 409
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O35345 | IMA7_MOUSE | No assigned EC number | 0.5797 | 0.9104 | 0.6828 | yes | no |
| O60684 | IMA7_HUMAN | No assigned EC number | 0.5771 | 0.9104 | 0.6828 | yes | no |
| Q5RBV0 | IMA7_PONAB | No assigned EC number | 0.5771 | 0.9104 | 0.6828 | yes | no |
| Q02821 | IMA1_YEAST | No assigned EC number | 0.5422 | 0.9651 | 0.7158 | yes | no |
| O94374 | IMA2_SCHPO | No assigned EC number | 0.5588 | 0.9601 | 0.7161 | yes | no |
| Q76P29 | IMAB_DICDI | No assigned EC number | 0.6388 | 0.9751 | 0.7596 | yes | no |
| O22478 | IMA_SOLLC | No assigned EC number | 0.8383 | 0.9950 | 0.7590 | N/A | no |
| Q0V7M0 | IMA7_BOVIN | No assigned EC number | 0.5797 | 0.9104 | 0.6828 | yes | no |
| Q71VM4 | IMA1A_ORYSJ | No assigned EC number | 0.8728 | 0.9950 | 0.7604 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 402 | |||
| COG5064 | 526 | COG5064, SRP1, Karyopherin (importin) alpha [Intra | 1e-171 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 8e-33 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 9e-32 | |
| pfam01749 | 97 | pfam01749, IBB, Importin beta binding domain | 1e-30 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 9e-21 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 1e-13 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 1e-09 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 1e-09 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 2e-09 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 5e-08 | |
| pfam13513 | 55 | pfam13513, HEAT_EZ, HEAT-like repeat | 1e-07 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 2e-07 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 2e-07 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 4e-07 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 1e-06 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 2e-06 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 4e-06 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 2e-05 | |
| pfam13646 | 88 | pfam13646, HEAT_2, HEAT repeats | 2e-05 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 8e-05 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 8e-05 | |
| COG5116 | 926 | COG5116, RPN2, 26S proteasome regulatory complex c | 5e-04 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 9e-04 | |
| pfam13513 | 55 | pfam13513, HEAT_EZ, HEAT-like repeat | 0.003 | |
| pfam13513 | 55 | pfam13513, HEAT_EZ, HEAT-like repeat | 0.004 |
| >gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 489 bits (1259), Expect = e-171
Identities = 230/394 (58%), Positives = 281/394 (71%), Gaps = 5/394 (1%)
Query: 10 EVRRSKY--KVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDN 67
E RR + K A+E RRRRE+ VE+RK KREE L K+R + + ++ ++
Sbjct: 8 EARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIPMEQ 67
Query: 68 KKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD 127
+ LP + ++SDD QL A +FRKLLS E SPPI VI +GVVPRF+EF+
Sbjct: 68 QFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQ 127
Query: 128 FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
LQFEAAWALTNIASGT++ T+VV+D GAVP+F++LLSS DDVREQAVWALGN+AGD
Sbjct: 128 RDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGD 187
Query: 188 SPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPA 245
S CRD VL GAL PLL A +SMLRNATWTLSN CRGK P P + ALP
Sbjct: 188 SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPI 247
Query: 246 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305
L +LI+S D EVL DACWA+SYLSDG N+KIQAV++ G+ RLVELL H S + PALR
Sbjct: 248 LAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR 307
Query: 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 365
+VGNIVTG D QTQ IIN AL LL+ + K++I+KEACWTISNITAGN QIQA+I
Sbjct: 308 SVGNIVTGSDDQTQVIINCGALKAFRSLLS-SPKENIRKEACWTISNITAGNTEQIQAVI 366
Query: 366 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399
+A +I PL++LL +AE++IKKEA WAISNATSGG
Sbjct: 367 DANLIPPLIHLLSSAEYKIKKEACWAISNATSGG 400
|
Length = 526 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 8e-33
Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
Query: 109 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS 168
VIQ+G +P + LS D +Q EAAWAL+N+++G ++N + V++ G +P V+LL S
Sbjct: 2 AVIQAGGLPALVSLLSSSDEN-VQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228
++V + A+WAL N+A + +VL G + P L + + + +NAT LSN
Sbjct: 61 EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGV-PKLVNLLDSSNEDIQKNATGALSNLA 119
Query: 229 R 229
Sbjct: 120 S 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 9e-32
Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
LPAL L+ S+D+ V +A WALS LS G ND IQAV+EAG P LV+LL+ V+
Sbjct: 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67
Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355
AL + N+ G + ++ +P L++LL + + I+K A +SN+ +
Sbjct: 68 AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-30
Identities = 42/97 (43%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 4 RPNARTEVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT-- 60
+ E RR YK DAEE RRRRE+ VE+RKNKREE LLK+R GL
Sbjct: 1 ESPNKPEYRRKSYKNKGRDAEEMRRRREEVGVELRKNKREEQLLKRRNVGLPPEDGAEPE 60
Query: 61 ---NSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQ 94
+ ++ ++ LP MV GV SDD QL AT
Sbjct: 61 SELDGSSDADQLSLELPVMVQGVNSDDPENQLSATQA 97
|
This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Length = 97 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 9e-21
Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
LPA+V+ + S D N+Q +A L S + I V+++G +P ++ L +D ++
Sbjct: 9 LPALVSLLSSSDENVQREAAWALSNL-SAGNNDNIQAVVEAGGLPALVQLLKSED-EEVV 66
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 185
A WAL N+A+G +N +V++ G VP V LL S +D+++ A AL N+A
Sbjct: 67 KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 1e-13
Identities = 31/81 (38%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 321 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA 380
+I LP L+ LL+ + +++++EA W +SN++AGN + IQA++EAG + LV LL +
Sbjct: 3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 381 EFEIKKEAAWAISNATSGGSS 401
+ E+ K A WA+ N +G
Sbjct: 62 DEEVVKAALWALRNLAAGPED 82
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 1e-09
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 185
+ EN + VI+ GAVP V+LLSSP ++V+E+A WAL N+A
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 1e-09
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 185
EN + V+D G +P V LL S ++V ++A WAL N++
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 2e-09
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397
+ QA+IEAG + PLV LL + + E+++EAAWA+SN +
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 5e-08
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312
+ + QAVIEAG P LV+LL P V A + N+
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-07
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 184
+++ AA AL +A G E R + +P + LL D+VRE A WALG +
Sbjct: 1 WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55
|
The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 2e-07
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
++ QAV++AG P LVELL+ V+ A + N+
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-07
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 103 RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144
V+ +G +P +E L +D ++ EAAWAL+N++S
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 4e-07
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 104 SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144
VI++G VP ++ LS D ++Q EAAWAL+N+A+
Sbjct: 2 PENKQAVIEAGAVPPLVQLLSSPD-EEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 1e-06
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397
QA+++AG + LV LL + + E+ KEAAWA+SN +S
Sbjct: 4 NKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355
Q +I A+P L+ LL+ + +++EA W +SN+ A
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSP-DEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 4e-06
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355
DD Q +++ LP L++LL ++ + KEA W +SN+++
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLSS 41
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSD 270
A+P L +L+ S D+EV +A WALS L+
Sbjct: 13 AVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
+ +E L D P+++ AA AL + D A+P + LL P +VR
Sbjct: 1 LEALLEALLSDPDPEVRAAAARALGELG-----------DPEALPALLELLKDPDPEVRR 49
Query: 176 QAVWALGNVAGDS 188
A ALG +
Sbjct: 50 AAAEALGKLGDPE 62
|
This family includes multiple HEAT repeats. Length = 88 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 8e-05
Identities = 16/39 (41%), Positives = 31/39 (79%)
Query: 362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
+A+I+AG + LV+LL +++ +++EAAWA+SN ++G +
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNN 39
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 8e-05
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSD 270
LPAL L+ S D+EV+ +A WALS LS
Sbjct: 13 GLPALVELLKSEDEEVVKEAAWALSNLSS 41
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 5e-04
Identities = 41/158 (25%), Positives = 57/158 (36%), Gaps = 21/158 (13%)
Query: 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 178
+I L D L++ ++L GT N VV + V S DDVR AV
Sbjct: 520 YINELLYDKDSILRYNGVFSLALAYVGTG-NLGVVST--LLHYAV---SDGNDDVRRAAV 573
Query: 179 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238
ALG V C D L G + L N H + L C G
Sbjct: 574 IALGFVC-----CDDRDLLVGTVELLSESHNFHVRAG----VAVALGIACAGT------G 618
Query: 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 276
+ A LE L++ +D V A A+ + N ++
Sbjct: 619 DKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656
|
Length = 926 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 9e-04
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 188 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229
SP+ + V+ GA+ P L Q + A W LSN
Sbjct: 1 SPENKQAVIEAGAV-PPLVQLLSSPDEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (82), Expect = 0.003
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 173 VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227
VRE A ALG +AG P L + L+P L + + A W L
Sbjct: 3 VREAAALALGALAGGGP--ELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55
|
The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55 |
| >gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (81), Expect = 0.004
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 268
A L G P+ L LPAL L+ +DDEV A WAL +
Sbjct: 5 EAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55
|
The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 402 | |||
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 100.0 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 100.0 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 100.0 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 100.0 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 100.0 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 100.0 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.97 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.96 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.92 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.89 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 99.81 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.78 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.74 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.74 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.72 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.72 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.71 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.7 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.68 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.65 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.65 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.64 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.63 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.62 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.6 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.59 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.58 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.56 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.54 | |
| PF01749 | 97 | IBB: Importin beta binding domain; InterPro: IPR00 | 99.54 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 99.53 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.52 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 99.45 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.44 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 99.43 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.42 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.41 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.39 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.35 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.33 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.33 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.33 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 99.31 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 99.27 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 99.25 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 99.24 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.22 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 99.22 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 99.16 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.16 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 99.11 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.06 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.05 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 99.04 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 99.03 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 98.97 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.9 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.88 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.85 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 98.85 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.83 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 98.79 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 98.76 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 98.74 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 98.72 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 98.72 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 98.69 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 98.67 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 98.67 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 98.67 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 98.67 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 98.64 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.62 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 98.59 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 98.59 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.58 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 98.58 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 98.58 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.58 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.54 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 98.54 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 98.52 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 98.49 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 98.48 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 98.48 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 98.46 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 98.45 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 98.43 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 98.42 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 98.42 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.41 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 98.39 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.37 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.37 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 98.36 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 98.35 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 98.29 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.25 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 98.25 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 98.22 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 98.21 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 98.2 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 98.19 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 98.18 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.18 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 98.16 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.15 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 98.15 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.08 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 98.05 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 98.03 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 98.02 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.01 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 98.0 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 97.99 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 97.99 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.99 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 97.97 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.95 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 97.95 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.93 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.9 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 97.88 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 97.87 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.83 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 97.83 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.82 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 97.81 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.8 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 97.78 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 97.77 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 97.75 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 97.75 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 97.73 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 97.7 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 97.69 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 97.64 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 97.63 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.61 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 97.6 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 97.56 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 97.56 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 97.52 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 97.5 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 97.48 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 97.44 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 97.44 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 97.41 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 97.39 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 97.34 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 97.33 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 97.33 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.3 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.29 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 97.29 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 97.29 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 97.28 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 97.27 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.27 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 97.27 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 97.26 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 97.21 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.2 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 97.16 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 97.11 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 97.06 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 97.05 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 97.03 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 97.02 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 96.98 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 96.96 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 96.92 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 96.91 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 96.89 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 96.87 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 96.84 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 96.84 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 96.81 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 96.79 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 96.77 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 96.68 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 96.65 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 96.65 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 96.64 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 96.59 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 96.57 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 96.57 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 96.5 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 96.48 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 96.46 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 96.43 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 96.36 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 96.35 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 96.33 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 96.14 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 96.07 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 95.93 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 95.9 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 95.89 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 95.88 | |
| KOG1566 | 342 | consensus Conserved protein Mo25 [Function unknown | 95.88 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 95.87 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 95.85 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 95.85 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 95.84 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 95.82 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 95.79 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 95.78 | |
| KOG1566 | 342 | consensus Conserved protein Mo25 [Function unknown | 95.74 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 95.68 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 95.61 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 95.5 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 95.5 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 95.42 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 95.31 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 95.25 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 95.25 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 95.22 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 95.14 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 95.1 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 95.1 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 94.93 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 94.85 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 94.85 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 94.77 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 94.77 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 94.73 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 94.57 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 94.55 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 94.53 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 94.49 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 94.43 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 94.4 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 94.28 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 94.25 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 94.2 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 94.18 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 94.15 | |
| PF14225 | 262 | MOR2-PAG1_C: Cell morphogenesis C-terminal | 93.88 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 93.62 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 93.56 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 93.47 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 93.46 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 93.44 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 93.43 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 93.3 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 93.18 | |
| KOG1822 | 2067 | consensus Uncharacterized conserved protein [Funct | 93.17 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 92.92 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 92.88 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 92.85 | |
| KOG2005 | 878 | consensus 26S proteasome regulatory complex, subun | 92.84 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 92.81 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 92.81 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 92.73 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 92.64 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 92.62 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 92.54 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 92.35 | |
| PF08324 | 268 | PUL: PUL domain; InterPro: IPR013535 The PUL (afte | 92.34 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 92.32 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 91.78 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 91.65 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 91.53 | |
| PF04388 | 668 | Hamartin: Hamartin protein; InterPro: IPR007483 Th | 91.45 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 91.43 | |
| PF11538 | 40 | Snurportin1: Snurportin1; InterPro: IPR024721 Snur | 91.4 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 91.25 | |
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 91.07 | |
| PF11707 | 330 | Npa1: Ribosome 60S biogenesis N-terminal; InterPro | 90.88 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 90.59 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 90.49 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 90.44 | |
| PF11707 | 330 | Npa1: Ribosome 60S biogenesis N-terminal; InterPro | 90.2 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 90.04 | |
| PF06685 | 249 | DUF1186: Protein of unknown function (DUF1186); In | 89.92 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 89.44 | |
| KOG1788 | 2799 | consensus Uncharacterized conserved protein [Funct | 89.12 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 89.07 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 88.9 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 88.68 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 88.51 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 88.21 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 87.99 | |
| PF14225 | 262 | MOR2-PAG1_C: Cell morphogenesis C-terminal | 87.84 | |
| PF08324 | 268 | PUL: PUL domain; InterPro: IPR013535 The PUL (afte | 87.67 | |
| PF06685 | 249 | DUF1186: Protein of unknown function (DUF1186); In | 87.61 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 87.57 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 87.51 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 87.41 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 86.92 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 86.54 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 86.26 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 86.06 | |
| PF04869 | 312 | Uso1_p115_head: Uso1 / p115 like vesicle tethering | 85.82 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 85.65 | |
| KOG1410 | 1082 | consensus Nuclear transport receptor RanBP16 (impo | 85.36 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 85.07 | |
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 84.84 | |
| PF00790 | 140 | VHS: VHS domain; InterPro: IPR002014 The VHS domai | 84.48 | |
| cd03572 | 122 | ENTH_epsin_related ENTH domain, Epsin Related fami | 83.87 | |
| PF12726 | 727 | SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y | 83.5 | |
| KOG1988 | 970 | consensus Uncharacterized conserved protein [Funct | 82.79 | |
| KOG4464 | 532 | consensus Signaling protein RIC-8/synembryn (regul | 82.19 | |
| KOG1788 | 2799 | consensus Uncharacterized conserved protein [Funct | 82.08 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 82.03 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 81.08 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 80.79 |
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-77 Score=504.63 Aligned_cols=392 Identities=58% Similarity=0.892 Sum_probs=362.9
Q ss_pred CccHHHhhhccC-C-CCchHHhhhhHHHHHHHHHHhhhHHHHhhhhcc-ccCCCCCcchhhhhhhhhccHHHHHHhhcCC
Q 015687 7 ARTEVRRSKYKV-A-VDAEEGRRRREDNMVEIRKNKREESLLKKRREG-LQAHQPLTNSAALDNKKLESLPAMVAGVWSD 83 (402)
Q Consensus 7 ~~~~~~~~~~k~-~-~~~~~~r~~r~~~~~~lRk~~r~~~~~~kr~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~l~s~ 83 (402)
+.++.|+..||+ | ++++|+||+|++.++||||+||||.++||||.. ..++..+. .....++....+|.+.+.|.|+
T Consensus 5 f~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss-~i~meqq~~~elp~lt~~l~Sd 83 (526)
T COG5064 5 FVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESS-FIPMEQQFYSELPQLTQQLFSD 83 (526)
T ss_pred cchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhc-cCchhHHhhhhhHHHHHHHhhh
Confidence 467889999998 4 779999999999999999999999999999973 22222211 1122223335789999999999
Q ss_pred CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHH
Q 015687 84 DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 163 (402)
Q Consensus 84 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 163 (402)
|-+.+..|...+++++|.+..||++.+++.|++|.|++++.+.....++++|+|+|+|+++++..++..+++.|++|.++
T Consensus 84 Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfi 163 (526)
T COG5064 84 DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFI 163 (526)
T ss_pred HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHH
Confidence 99999999999999999999999999999999999999996544378899999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccc-hhhHHHHHHHHHHHHhhhCC-CCCchhhhhc
Q 015687 164 RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGK-PQPLFEQTRP 241 (402)
Q Consensus 164 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~ 241 (402)
++|.+++.+++++++|+|||++++++.+|+.+++.|++++++.++..+ .+..+.+++.|+|+|||+++ |.+....+..
T Consensus 164 qlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq 243 (526)
T COG5064 164 QLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ 243 (526)
T ss_pred HHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH
Confidence 999999999999999999999999999999999999999999999544 36799999999999999998 8888889999
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 015687 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI 321 (402)
Q Consensus 242 ~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i 321 (402)
.+|.|.+++.+.|+++..+|||+++|+++++.+.++.+++.|+..+|+++|.+++..++.+|++.+||+++|++.+++.+
T Consensus 244 alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqvi 323 (526)
T COG5064 244 ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVI 323 (526)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCCC
Q 015687 322 INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 322 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
++.|+++.+..+|+++ ...+|++|||+++||++|+.++++.+++.+++|+|+.+|.+.+.+++++||||+.|..+||.
T Consensus 324 I~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~ 401 (526)
T COG5064 324 INCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL 401 (526)
T ss_pred eecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 9999999999999999 88999999999999999999999999999999999999999999999999999999999985
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-73 Score=515.75 Aligned_cols=390 Identities=67% Similarity=1.021 Sum_probs=359.3
Q ss_pred cHHHhhhccC-CCCchHHhhhhHHHHHHHHHHhhhHHHHhhhhccccCCCCCcchhhhhhhhhccHHHHHHhhcCCCHHH
Q 015687 9 TEVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNI 87 (402)
Q Consensus 9 ~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~~ 87 (402)
...|.++||+ +++++|+||||++..+|+||+||+|.+.|||+...+....+. ...........+..++.+.|+++..
T Consensus 5 ~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~ 82 (514)
T KOG0166|consen 5 SNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLDEL--LSDSQSQASNLELMLAALYSDDPQQ 82 (514)
T ss_pred hHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhcccccc--cchhHHHhhhhHHHHHHHhCCCHHH
Confidence 3466677776 799999999999999999999999999999993222221111 1111111223688999999999999
Q ss_pred HHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhC
Q 015687 88 QLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS 167 (402)
Q Consensus 88 ~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~ 167 (402)
+..+...+++++|.+++|+++.++..|++|.|+++|...+++.++++|+|+|+|||+++.+++..+++.|++|.|+.++.
T Consensus 83 q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~ 162 (514)
T KOG0166|consen 83 QLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS 162 (514)
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc
Confidence 99999999999999989999999999999999999987666999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-CCCchhhhhchHHHH
Q 015687 168 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246 (402)
Q Consensus 168 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L 246 (402)
+++..++++|+|+|+|++++++.+|+.+++.|++++|+.++..+....+.++++|+|+|||+++ |.+.+..+..++|+|
T Consensus 163 s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L 242 (514)
T KOG0166|consen 163 SPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPAL 242 (514)
T ss_pred CCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999966556689999999999999999 999999999999999
Q ss_pred HHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCC
Q 015687 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA 326 (402)
Q Consensus 247 ~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~ 326 (402)
..++++.|+++..++||+++||++++.+.++.+++.|++++|+++|.+.+..++.+|++++||+++|++.+++.+++.|+
T Consensus 243 ~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~ 322 (514)
T KOG0166|consen 243 LRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGA 322 (514)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCCC
Q 015687 327 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 327 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
+|.|..++..++...+|++|||+++||++|++++++.+++.|++|.|+.+|+.+++++|++|+|||+|++.+|+
T Consensus 323 L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 323 LPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 99999999955477899999999999999999999999999999999999999999999999999999999997
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=335.30 Aligned_cols=327 Identities=29% Similarity=0.461 Sum_probs=297.2
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
|.+|.+++.|.. .++.+++.|+|+|.+++++. ....+.+++.|.+|.|+.++.+++ ..++.+|+|+|+|++.+++.+
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence 789999999985 56999999999999999986 788889999999999999999999 999999999999999999999
Q ss_pred hHHHHhCCchHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhh
Q 015687 150 TRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~ 228 (402)
++.+++.|++++|+.++...+. .+...+.|+|.|+|.+....-..-.-..+++.|..++ .+.|++++..+||++++|+
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999987665 7888999999999977521222222234788999999 8999999999999999999
Q ss_pred hCCC-CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCChhhHHHHHHH
Q 015687 229 RGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRT 306 (402)
Q Consensus 229 ~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~ 306 (402)
.+.+ ..+.....+++|.|+++|.+.++.++.+|+++++|++.+++..++.+++.|+++.|..++. ++...+++.|+|+
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence 8863 3344445899999999999999999999999999999999999999999999999999998 6677799999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 015687 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385 (402)
Q Consensus 307 l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 385 (402)
|+||+.|+.+++++++++|++|.|+.+|++. +..+|++|+|+++|++. ++++++..+++.|++++|+++|...|.++.
T Consensus 346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii 424 (514)
T KOG0166|consen 346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII 424 (514)
T ss_pred HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence 9999999999999999999999999999999 89999999999999997 799999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCC
Q 015687 386 KEAAWAISNATSGGSS 401 (402)
Q Consensus 386 ~~a~~aL~nl~~~~~~ 401 (402)
..++.+|.|+...|..
T Consensus 425 ~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 425 LVALDGLENILKVGEA 440 (514)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999876643
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=310.25 Aligned_cols=326 Identities=27% Similarity=0.382 Sum_probs=294.0
Q ss_pred ccHHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
|.+|.+++.+. .+..-.++.|+|+|.++.|+. ....+.+++.|.+|.|+++|.+++ .+++.+++|+|+|++.+++.+
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~~ 191 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEGC 191 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchhH
Confidence 67999999995 566778999999999999987 777888999999999999999998 899999999999999999999
Q ss_pred hHHHHhCCchHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC--chhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHH
Q 015687 150 TRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDS--PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 225 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~--~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~ 225 (402)
++.+.+.|++.+++.++.+. +..+...+.|+|.|+|.+. |..-..+. ..++.|.+++ ...|+++...|||+++
T Consensus 192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is--qalpiL~KLi-ys~D~evlvDA~WAiS 268 (526)
T COG5064 192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS--QALPILAKLI-YSRDPEVLVDACWAIS 268 (526)
T ss_pred HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHH--HHHHHHHHHH-hhcCHHHHHHHHHHHH
Confidence 99999999999999998864 3478899999999999653 22222232 2688888888 8889999999999999
Q ss_pred HhhhCC-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHH
Q 015687 226 NFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 304 (402)
Q Consensus 226 ~l~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~ 304 (402)
+|+.+. .........++.+.|+++|.+++..++..+++.++|+..+++...+.++..|+++.+..+|+++...+++.||
T Consensus 269 YlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaC 348 (526)
T COG5064 269 YLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEAC 348 (526)
T ss_pred HhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhh
Confidence 999886 2333333478888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHHHHhccCC
Q 015687 305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAIIEAGIIGPLVNLLLNAE 381 (402)
Q Consensus 305 ~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~ll~~~~ 381 (402)
|+|+|+..|+.++++.+++.+++|+|+.+|.+. +..++++|||+++|.+.| .|+.+..+++.|++.+|+++|...+
T Consensus 349 WTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~d 427 (526)
T COG5064 349 WTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVD 427 (526)
T ss_pred eeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccC
Confidence 999999999999999999999999999999988 999999999999999974 7899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCC
Q 015687 382 FEIKKEAAWAISNATSGGSSW 402 (402)
Q Consensus 382 ~~v~~~a~~aL~nl~~~~~~~ 402 (402)
-++-+.++.++.|+...|.-|
T Consensus 428 Nkiiev~LD~~eniLk~Ge~d 448 (526)
T COG5064 428 NKIIEVALDAIENILKVGEQD 448 (526)
T ss_pred ccchhhhHHHHHHHHhhhhHH
Confidence 999999999999999988765
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=321.33 Aligned_cols=326 Identities=21% Similarity=0.250 Sum_probs=281.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
|.+|.++..|.++++..+..|+..+.++++.. .++...+++.|++|.|+++|.+++++.+|+.|+|+|++|++++++++
T Consensus 189 GaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r 267 (2102)
T PLN03200 189 GGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAK 267 (2102)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHH
Confidence 78999999999999999999999998887653 56788899999999999999876547999999999999999999999
Q ss_pred HHHHhCCchHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCCch-----------hhHH---HHhcCChHHHHHH
Q 015687 151 RVVIDHGAVPIFVRLLSSPT---------DDVREQAVWALGNVAGDSPK-----------CRDL---VLSNGALMPLLAQ 207 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~---------~~v~~~a~~~L~nl~~~~~~-----------~~~~---~~~~g~i~~L~~~ 207 (402)
..+++.|++|.|+.++.+++ ..++++|+|+|+|||++.+. .|+. ....|++.+++..
T Consensus 268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l 347 (2102)
T PLN03200 268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMV 347 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence 99999999999999998654 44699999999999987543 2222 2445788888888
Q ss_pred hccchhhHHH----HHHHHHHHHhhhCC-CCCchhhh-------------------hchHHHHHHhccCCChhHHHHHHH
Q 015687 208 FNEHAKLSML----RNATWTLSNFCRGK-PQPLFEQT-------------------RPALPALERLIHSNDDEVLTDACW 263 (402)
Q Consensus 208 l~~~~~~~~~----~~a~~~L~~l~~~~-~~~~~~~~-------------------~~~l~~L~~lL~~~~~~v~~~a~~ 263 (402)
+ +.++...+ ..++|+|.+|++++ |....... .++++.|+.+|...+.+++.+++|
T Consensus 348 ~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~ 426 (2102)
T PLN03200 348 F-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIR 426 (2102)
T ss_pred c-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHH
Confidence 8 34433333 36789999999987 43322111 345678888999899999999999
Q ss_pred HHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHH
Q 015687 264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 343 (402)
Q Consensus 264 ~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~ 343 (402)
+|.+++.++.+.++.+.+.|+++.|+.+|.+++..++..|+++++|++.++++++..++++|++|.|+++|.++ ++.++
T Consensus 427 aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~iq 505 (2102)
T PLN03200 427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKAK 505 (2102)
T ss_pred HHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCCC
Q 015687 344 KEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 344 ~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
++|+|+|+|++.++++ ++.++ +.|+++.|+++|.++++++++.|+|+|.|++.+++
T Consensus 506 eeAawAL~NLa~~~~q-ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d 562 (2102)
T PLN03200 506 EDSATVLWNLCCHSED-IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD 562 (2102)
T ss_pred HHHHHHHHHHhCCcHH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence 9999999999997444 55555 78999999999999999999999999999987765
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=300.81 Aligned_cols=325 Identities=18% Similarity=0.196 Sum_probs=293.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
++++.++.+|...+.+.|..+++.|..+..++ ...++.+.+.|++|.|+++|.+++ ..+|..|+|+|++++.++++++
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence 57888999999999999999999999997654 677888999999999999999988 8999999999999999888999
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
..+++.|+||.|+++|.+++..+++.|+|+|+|++.+.+..+..+.+.|++++|+++| .+.+...+..++|+|.+|+..
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998888888888899999999999 666889999999999999754
Q ss_pred CCCCc-----------------------------------h---hhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCC
Q 015687 231 KPQPL-----------------------------------F---EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 231 ~~~~~-----------------------------------~---~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~ 272 (402)
..... . ....+++|.|+.++.++++.++..|+|+|.+++.+.
T Consensus 561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 31110 0 002468999999999999999999999999999999
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCC-hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 015687 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (402)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~-~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 351 (402)
.+..+.++..|++++++.+|.+.+..++..++++|+|+..+. ..+...+++.|++|+|+++|.++ +..++..|+.+|.
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa 719 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA 719 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence 988899999999999999999999999999999999999754 45566778999999999999998 9999999999999
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCCC
Q 015687 352 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 352 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
|++.+ ++....+.+.|+++.|+++|++++++.|+.|+|+|.+++.+++
T Consensus 720 nLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 720 NLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 99986 4556778889999999999999999999999999999998876
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=209.04 Aligned_cols=323 Identities=21% Similarity=0.330 Sum_probs=284.3
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCc
Q 015687 69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (402)
Q Consensus 69 ~~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 148 (402)
..|++..+.++-++.|...|..++.+|.++... .++.+.++..|.+|.|+.++.+++ .++|+.+..++++|+-+ ..
T Consensus 165 ~sGaL~pltrLakskdirvqrnatgaLlnmThs--~EnRr~LV~aG~lpvLVsll~s~d-~dvqyycttaisnIaVd-~~ 240 (550)
T KOG4224|consen 165 RSGALEPLTRLAKSKDIRVQRNATGALLNMTHS--RENRRVLVHAGGLPVLVSLLKSGD-LDVQYYCTTAISNIAVD-RR 240 (550)
T ss_pred hccchhhhHhhcccchhhHHHHHHHHHHHhhhh--hhhhhhhhccCCchhhhhhhccCC-hhHHHHHHHHhhhhhhh-HH
Confidence 347888899977889999999999999999653 578899999999999999999999 99999999999999985 77
Q ss_pred chHHHHhCC--chHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHH
Q 015687 149 NTRVVIDHG--AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (402)
Q Consensus 149 ~~~~~~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 226 (402)
.+..+.+.| .+|.|++++.++++.++.+|..+|+|++.+.. ++..+.+.|.+|.+++++ +++..........++.|
T Consensus 241 ~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrn 318 (550)
T KOG4224|consen 241 ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELL-QSPMGPLILASVACIRN 318 (550)
T ss_pred HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhh
Confidence 888899888 99999999999999999999999999998876 677888999999999999 77777777788889999
Q ss_pred hhhCCCCCchhhhhchHHHHHHhccCCC-hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHH
Q 015687 227 FCRGKPQPLFEQTRPALPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305 (402)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~ 305 (402)
++-++-+.......|++..|+.+|...| ++++..|..+|.+++.........+.++|.++.+..++.+....++...-.
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisa 398 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISA 398 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHH
Confidence 9998766666666899999999998765 559999999999999877777788999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH------cCCHHHHHHHhcc
Q 015687 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE------AGIIGPLVNLLLN 379 (402)
Q Consensus 306 ~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~------~~~i~~L~~ll~~ 379 (402)
+++.++.. +.....+.+.|++|.|+.+..+. +.+++.+|+-+|.|++.. .++-..+++ .|+-..|++++.+
T Consensus 399 c~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~-v~~YarviEawd~P~~gi~g~L~Rfl~S 475 (550)
T KOG4224|consen 399 CIAQLALN-DNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSD-VEHYARVIEAWDHPVQGIQGRLARFLAS 475 (550)
T ss_pred HHHHHHhc-cccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhh-hHHHHHHHHHhcCcchhHHHHHHHHHhh
Confidence 99999874 45678899999999999999988 999999999999999985 333344443 4677889999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCC
Q 015687 380 AEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 380 ~~~~v~~~a~~aL~nl~~~~~ 400 (402)
++.-++..|.|++..+...+.
T Consensus 476 ~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 476 HELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred hHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999987653
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-28 Score=207.57 Aligned_cols=321 Identities=22% Similarity=0.288 Sum_probs=284.0
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCc
Q 015687 69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (402)
Q Consensus 69 ~~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 148 (402)
.+.++..++..+.++..+.|..++.++.+++.. ..+...+..+|++..+..+-++.+ ..+|..+..+|.|+... .+
T Consensus 124 ~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmThs-~E 199 (550)
T KOG4224|consen 124 SLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTHS-RE 199 (550)
T ss_pred eccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhhh-hh
Confidence 356788888888888889999999999999875 356667889999999999777777 89999999999999874 89
Q ss_pred chHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcC--ChHHHHHHhccchhhHHHHHHHHHHHH
Q 015687 149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFNEHAKLSMLRNATWTLSN 226 (402)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~~l~~~~~~~~~~~a~~~L~~ 226 (402)
+++.++..|++|.|+.++.+.+..++..|+.+++|++.+.. .|..+.+.+ .++.|+.++ .++++.++-.|.-+|.|
T Consensus 200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN 277 (550)
T ss_pred hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998766 578888888 899999999 88899999999999999
Q ss_pred hhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC-hhhHHHHHH
Q 015687 227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-PSVLIPALR 305 (402)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~-~~v~~~a~~ 305 (402)
++.+..........+.+|.++++|+++..........++.|++-++-.. ..+++.|++.+|+.+|...+ ++++..|..
T Consensus 278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvs 356 (550)
T KOG4224|consen 278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVS 356 (550)
T ss_pred hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHH
Confidence 9988544444455899999999999998888888889999998766543 45789999999999998765 569999999
Q ss_pred HHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 015687 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385 (402)
Q Consensus 306 ~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 385 (402)
++.|++.........+++.|.+|.+..++-++ .-+++.+...+++.++.. ......+.+.|++|.|+..+.+.+.+++
T Consensus 357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~ 434 (550)
T KOG4224|consen 357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVR 434 (550)
T ss_pred HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhc
Confidence 99999998888999999999999999999988 889999999999988874 3446789999999999999999999999
Q ss_pred HHHHHHHHHhhcC
Q 015687 386 KEAAWAISNATSG 398 (402)
Q Consensus 386 ~~a~~aL~nl~~~ 398 (402)
-+|+.||.|+.+.
T Consensus 435 gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 435 GNAAAALINLSSD 447 (550)
T ss_pred ccHHHHHHhhhhh
Confidence 9999999999875
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-22 Score=192.54 Aligned_cols=323 Identities=20% Similarity=0.273 Sum_probs=264.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+.++.|++.|.+++.++...++..|.++ |.. ..+...+.+.|+++.|++++.+++ .+++..++++|.|++.+ ++.+
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkL-Si~-~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSfd-~~~R 365 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKL-SIF-KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSFD-PELR 365 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHH-cCC-HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCcC-HHHH
Confidence 7899999999999999999999999999 443 567888999999999999999988 89999999999999996 8889
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
..+++.|++|.|+.+|.++ ..+..++.+|.+++.+.. .|..+...++++.++.++..+++..+...+++.+.||+.+
T Consensus 366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 9999999999999999864 466779999999998765 7889999999999999886666665555556666665554
Q ss_pred CCCCchh-------------------------------------hhhchHHHHHHhccC-CChhHHHHHHHHHHHhccCC
Q 015687 231 KPQPLFE-------------------------------------QTRPALPALERLIHS-NDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 231 ~~~~~~~-------------------------------------~~~~~l~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~ 272 (402)
....... ...+.+..|+.++.. ++++....++.+|+|++..+
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ 522 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPD 522 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCC
Confidence 3222111 112334444444433 46788999999999999766
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-CchhHHHHHHHH
Q 015687 273 NDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWT 349 (402)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~~L~~~--~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~-~~~~v~~~a~~~ 349 (402)
.+..+.+.+.+++|.+..+|..+ .+++...++..+|.++. .+.....+.+.|+++.|+.+|... +|.++.-..+++
T Consensus 523 ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~ 601 (708)
T PF05804_consen 523 LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYV 601 (708)
T ss_pred cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHH
Confidence 66666666779999999999644 45788999999999986 556777788999999999999765 367899999999
Q ss_pred HHHHhcCCHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCCCCC
Q 015687 350 ISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSSW 402 (402)
Q Consensus 350 L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~ 402 (402)
+..+..+ ++.+..++ +.+++..|++++++.+..+++.|-.+|.-++.+...|
T Consensus 602 f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w 654 (708)
T PF05804_consen 602 FYQLLFH-EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEW 654 (708)
T ss_pred HHHHHcC-hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHH
Confidence 9999998 45566666 5889999999999999999999999999999888777
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-20 Score=179.07 Aligned_cols=316 Identities=18% Similarity=0.200 Sum_probs=250.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 153 (402)
+++-..++.++ .+...+...|.+++. +......+...|+++.|+++|++++ .++...++.+|.+++.. .+++..+
T Consensus 253 kk~~~l~~kQe-qLlrv~~~lLlNLAe--d~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~-~ENK~~m 327 (708)
T PF05804_consen 253 KKLQTLIRKQE-QLLRVAFYLLLNLAE--DPRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIF-KENKDEM 327 (708)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhc--ChHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 33444444433 344567788889864 2455667899999999999999988 89999999999999986 7899999
Q ss_pred HhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCC
Q 015687 154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233 (402)
Q Consensus 154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 233 (402)
.+.|+++.|.+++.+++.+++..++++|.||+.+.. .|..+++.|++|+|+.+|.+ +..+..++.+|.++|..+..
T Consensus 328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~dd~~ 403 (708)
T PF05804_consen 328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMDDEA 403 (708)
T ss_pred HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccCHhh
Confidence 999999999999999999999999999999998876 69999999999999999942 34556789999999998755
Q ss_pred CchhhhhchHHHHHHhcc-CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh---------------------
Q 015687 234 PLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL--------------------- 291 (402)
Q Consensus 234 ~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~--------------------- 291 (402)
.......+++|.+++++- .+++.+...+++.+.|++.... ..+.+.+.|+++.|+..
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~ 482 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDG 482 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 555555789999998764 4566677777777788775543 33555555555554433
Q ss_pred ----------------cCC-CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-CchhHHHHHHHHHHHH
Q 015687 292 ----------------LRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNI 353 (402)
Q Consensus 292 ----------------L~~-~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~nl 353 (402)
+.. ++++....++.+++|+...+......+.+.+++|.|..+|..+ ..+++.-+++-.++.+
T Consensus 483 ~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtl 562 (708)
T PF05804_consen 483 PLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTL 562 (708)
T ss_pred hHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 222 2556778899999999887666666666789999999999765 2457999999999998
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHhhcCCC
Q 015687 354 TAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 354 ~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~~~ 400 (402)
+. ++.....+.+.|+++.|+.+|.. +|.++....++++..+..++.
T Consensus 563 a~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~ 610 (708)
T PF05804_consen 563 AS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE 610 (708)
T ss_pred HC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH
Confidence 86 47777888899999999999976 568899999999999987753
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-17 Score=154.70 Aligned_cols=261 Identities=21% Similarity=0.345 Sum_probs=226.8
Q ss_pred cHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 72 SLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 72 ~i~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
.+.+|++.|+.. |+..|..|+..|+.+++-.+.+....+--.-++|.|+.+|+...+.++...|+++|++++..-|.-.
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 468899999976 9999999999999998877566666665666899999999998879999999999999999999999
Q ss_pred HHHHhCCchHHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 151 RVVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 151 ~~~~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
..+++.++||.|+.- +.-+..++.++++.+|-.|+...+ ..+++.|++-..+..| +.-...+++.|+.+.+|+|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999984 445889999999999999998876 4788999999999999 77789999999999999999
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhcc---CChHHHHHHHHhCcHHHHHHhcCCC----ChhhHHH
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLRHP----SPSVLIP 302 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~~L~~~----~~~v~~~ 302 (402)
.-+...+..+...+|.|..+|++.|....+.+|-++.++++ +.++..+.+...|++....+++.-. +..+...
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 98888889999999999999999999999999999999975 4667888899999999999998644 2345667
Q ss_pred HHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC
Q 015687 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336 (402)
Q Consensus 303 a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~ 336 (402)
.++.+..++++++-....+...++...|..+|..
T Consensus 404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 8888999999888777777777777777777743
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-16 Score=136.46 Aligned_cols=309 Identities=12% Similarity=0.128 Sum_probs=248.6
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhcCCCcchHHHHhCCch
Q 015687 81 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTSENTRVVIDHGAV 159 (402)
Q Consensus 81 ~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i 159 (402)
.+++....+.++.+|..+..+. ..+.+..++..++++|... ++.++....+.++..-+..+..+++.+++.++.
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 3566777788888887775432 2355667788999998643 237888888999998888889999999999999
Q ss_pred HHHHHhhCC-CCHHHHHHHHHHHHHhhCCCc---------hhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 160 PIFVRLLSS-PTDDVREQAVWALGNVAGDSP---------KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 160 ~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---------~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
+.+.+.|.. ....+...++|++..+..++. +....+...|++..|++.+.-..++.+...++.+|..|+-
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 999987764 444677789999999986653 2346677888999999999777789999999999999987
Q ss_pred CCCCCchhhhhchHHHHHHhccCC-Ch---hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc--CCCChhhHHHH
Q 015687 230 GKPQPLFEQTRPALPALERLIHSN-DD---EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSPSVLIPA 303 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~-~~---~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L--~~~~~~v~~~a 303 (402)
.+.-.......|++..++.++.+. +. +....++..|..++..+ +....+++.|+.+.++.++ ..++|.+...+
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D-svKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD-SVKSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC-chHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 755555556689999999999774 33 35567888888888544 4567899999999999987 35678899999
Q ss_pred HHHHHHhhcCChHHHHHHHhCCChHHHHHHhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCH
Q 015687 304 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF 382 (402)
Q Consensus 304 ~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 382 (402)
+.+++-++-..++....+++.|+-...++.|+ ++....++++|||.+.|++..+.++...++.. +++.|+..-...++
T Consensus 351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~ 429 (461)
T KOG4199|consen 351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHE 429 (461)
T ss_pred HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCc
Confidence 99999999999999999999999999999885 44356899999999999999888988888877 67888888888888
Q ss_pred HHHHHHHHHHHHhh
Q 015687 383 EIKKEAAWAISNAT 396 (402)
Q Consensus 383 ~v~~~a~~aL~nl~ 396 (402)
.+...|-.||..+-
T Consensus 430 tce~~akaALRDLG 443 (461)
T KOG4199|consen 430 TCEAAAKAALRDLG 443 (461)
T ss_pred cHHHHHHHHHHhcC
Confidence 88888888877653
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-17 Score=153.58 Aligned_cols=320 Identities=25% Similarity=0.292 Sum_probs=243.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCc--c
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE--N 149 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~--~ 149 (402)
.+|+.+.+|.+.++..|-.|+..+..+.- .++.....+-+.|.|+.|+.+|.+.. .+++..|+++|.|+..++.. +
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcf-gd~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCF-GDNKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHh-hhHHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence 68999999999999999999999988854 43555567788999999999999998 99999999999999998766 8
Q ss_pred hHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc-cc------------hhhH
Q 015687 150 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EH------------AKLS 215 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~-~~------------~~~~ 215 (402)
.-.+.+.++|+.++.+|.. .|.++++.+..+|+||+..+. ++..++.. .+..|...+. .. .+.+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-LKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-HHHHHHHH-HHHHHHHhhcccccccCCCCcccccccce
Confidence 8899999999999999996 899999999999999998843 55555443 5555555432 11 1367
Q ss_pred HHHHHHHHHHHhhhCC-CCC-chhhhhchHHHHHHhcc------------------------------------------
Q 015687 216 MLRNATWTLSNFCRGK-PQP-LFEQTRPALPALERLIH------------------------------------------ 251 (402)
Q Consensus 216 ~~~~a~~~L~~l~~~~-~~~-~~~~~~~~l~~L~~lL~------------------------------------------ 251 (402)
+..+++.+|.|++... ... .+....|++..|+..++
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 8888999998888743 111 11222444444443332
Q ss_pred ------------------------------------------------------------CCChhHHHHHHHHHHHhccC
Q 015687 252 ------------------------------------------------------------SNDDEVLTDACWALSYLSDG 271 (402)
Q Consensus 252 ------------------------------------------------------------~~~~~v~~~a~~~l~~l~~~ 271 (402)
+.++.+.+.++.+|-|++.+
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 11233344555566666543
Q ss_pred Ch----HHHHHH-HHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCc-----hh
Q 015687 272 TN----DKIQAV-IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK-----KS 341 (402)
Q Consensus 272 ~~----~~~~~~-~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~-----~~ 341 (402)
.. .....+ ....+++.|+++|..+++.+...++.+|.|++.+.. .+.++..++++.|+..|-.... .+
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r--nk~ligk~a~~~lv~~Lp~~~~~~~~sed 627 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR--NKELIGKYAIPDLVRCLPGSGPSTSLSED 627 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch--hhhhhhcchHHHHHHhCcCCCCCcCchHH
Confidence 22 111222 455678999999999999999999999999997543 3446668999999999965523 67
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhc
Q 015687 342 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATS 397 (402)
Q Consensus 342 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~ 397 (402)
+...+|.+|.|+...+......+.+.+.++.|+.+..+ .++++-+.|...|..+-.
T Consensus 628 tv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 628 TVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred HHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 88999999999999899999999999999999999877 456888999888877643
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-15 Score=142.56 Aligned_cols=316 Identities=19% Similarity=0.232 Sum_probs=246.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 153 (402)
+.+...+++.+.+....++..|.+++... .+... ..+..+.|...|.+++ +.++..+++.|++++.++......+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l--~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~ 115 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSAL--SPDSL--LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL 115 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence 34778888888888888999999998643 22222 4557889999999988 9999999999999999877778888
Q ss_pred HhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCC
Q 015687 154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233 (402)
Q Consensus 154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 233 (402)
.+.++++.++.++.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++...+.
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~ 193 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE 193 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence 89999999999999999999999999999999887754 5677888888898888 555667888899999999987633
Q ss_pred C-chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCh-----hhHHH-HHHH
Q 015687 234 P-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP-----SVLIP-ALRT 306 (402)
Q Consensus 234 ~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~-----~v~~~-a~~~ 306 (402)
. ......|+++.++..+.++|.-++.+++.++..++. .+...+.+.+.|+++.|..++.+... .+..+ .+..
T Consensus 194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 2 233336899999999999999999999999999998 44556889999999999999965422 22333 3477
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH-HHc-C----CHHHHHHHhccC
Q 015687 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI-IEA-G----IIGPLVNLLLNA 380 (402)
Q Consensus 307 l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~-~----~i~~L~~ll~~~ 380 (402)
.|+++...+....... ..++..+..++.+. ++..+..|.-+++.|+.. .+....+ ... + ++.........+
T Consensus 273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~ 349 (503)
T PF10508_consen 273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSG 349 (503)
T ss_pred HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCC
Confidence 7888875443332111 24556677777777 999999999999999864 5555555 332 2 344555555667
Q ss_pred CHHHHHHHHHHHHHhhcCCC
Q 015687 381 EFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 381 ~~~v~~~a~~aL~nl~~~~~ 400 (402)
..++|..++.++.++...++
T Consensus 350 ~~~lk~r~l~al~~il~~~~ 369 (503)
T PF10508_consen 350 STELKLRALHALASILTSGT 369 (503)
T ss_pred chHHHHHHHHHHHHHHhcCC
Confidence 78999999999999976554
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-15 Score=133.88 Aligned_cols=254 Identities=16% Similarity=0.125 Sum_probs=201.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.++.|+..|.+.+..++..++..|..+-. ..+++.+..++.+++ +.++..|+++|+.+......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence 56889999999999999999999988732 225777888888888 99999999999998753211
Q ss_pred HHHhCCchHHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 152 VVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 152 ~~~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
...+++.|..+ ++++++.|+..|+.+||+++...... ...+++.+...+ .+++..++..++++|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence 11367888876 67899999999999999996543311 111344555556 66788999999999976542
Q ss_pred CCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
...++.|+.+|.++++.|+..++.+|+.+....+ .+++.|+..|.+.++.|+..|+++||.+
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3578999999999999999999999999943333 2467899999999999999999999996
Q ss_pred hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhc-cCCHHHHHHHH
Q 015687 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEAA 389 (402)
Q Consensus 311 ~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~ 389 (402)
-. + .++|.|++.+.++ + ++..++.+|+++.. +. .+|.|..+++ ++|..++..|.
T Consensus 220 ~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~~---------a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 KD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD--KT---------LLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred CC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--Hh---------HHHHHHHHHhhCCChhHHHHHH
Confidence 42 2 5688999999876 4 68889999998854 33 6889999996 78999999999
Q ss_pred HHHHH
Q 015687 390 WAISN 394 (402)
Q Consensus 390 ~aL~n 394 (402)
++|..
T Consensus 275 ~a~~~ 279 (280)
T PRK09687 275 DKLKR 279 (280)
T ss_pred HHHhc
Confidence 99853
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-14 Score=123.35 Aligned_cols=281 Identities=16% Similarity=0.200 Sum_probs=225.5
Q ss_pred cCcHHHHHHhh---cCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC--CCHHHHHHHHHHHHHhhCC
Q 015687 113 SGVVPRFIEFL---SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGD 187 (402)
Q Consensus 113 ~g~i~~L~~lL---~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~ 187 (402)
.|..+.++-++ .+++ ..+...++.+|..+..+.|+ +.+..+...++.+|.. ++.++....+..+..-|..
T Consensus 103 ~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~ 177 (461)
T KOG4199|consen 103 NGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM 177 (461)
T ss_pred CCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 44444444333 3444 77888899999888876665 4566789999998864 6788888888999988988
Q ss_pred CchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCC-chh---------hhhchHHHHHHhccC-CChh
Q 015687 188 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFE---------QTRPALPALERLIHS-NDDE 256 (402)
Q Consensus 188 ~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~---------~~~~~l~~L~~lL~~-~~~~ 256 (402)
.+.+|+.+++.++++.+...+.......+.+.++|++..|..+++-+ .+. .-.+++..|++.++- -||.
T Consensus 178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~ 257 (461)
T KOG4199|consen 178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD 257 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence 88899999999999999988866666689999999999998776322 111 114567788888865 4799
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC-h---hhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHH
Q 015687 257 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-P---SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 332 (402)
Q Consensus 257 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~-~---~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ 332 (402)
+....+.+|..++-.+ +..+.+.+.|+++.|+.++.+.+ . .....++..|..++ |++.....+++.|+++.++.
T Consensus 258 ~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~ 335 (461)
T KOG4199|consen 258 SLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIIT 335 (461)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHH
Confidence 9999999999998654 45678999999999999997743 2 34567788888887 46778888999999999998
Q ss_pred Hh-cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCC--HHHHHHHHHHHHHhhcCCC
Q 015687 333 LL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE--FEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 333 ll-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~a~~aL~nl~~~~~ 400 (402)
++ .+..+|.|..+++.+++-||-..|++-...++.|+-...++.|+... ..+|++|||++.|++.+|.
T Consensus 336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~ 406 (461)
T KOG4199|consen 336 LALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSA 406 (461)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhh
Confidence 77 34448999999999999999999999999999999999999998755 4699999999999998764
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.8e-16 Score=152.94 Aligned_cols=327 Identities=18% Similarity=0.193 Sum_probs=249.4
Q ss_pred hhccHHHHHHhhcCC---CHHHHHHHHHHHHHHhccCCCCch--hHHhhcCcHHHH-------HHhhcCC------CCHH
Q 015687 69 KLESLPAMVAGVWSD---DRNIQLDATTQFRKLLSIERSPPI--NEVIQSGVVPRF-------IEFLSRD------DFPQ 130 (402)
Q Consensus 69 ~~~~i~~l~~~l~s~---~~~~~~~a~~~l~~l~s~~~~~~~--~~~~~~g~i~~L-------~~lL~~~------~~~~ 130 (402)
..+.+|.+++.+..+ +.+.+..|-.+|.+++..+.+... +++--..++..+ ..+++.. ....
T Consensus 233 ~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~ 312 (2195)
T KOG2122|consen 233 RSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDE 312 (2195)
T ss_pred hccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc
Confidence 347899999999864 457888899999999865422211 121111122222 2223221 1123
Q ss_pred HHH-HHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC------------CCHHHHHHHHHHHHHhhCCCchhhHHH-H
Q 015687 131 LQF-EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS------------PTDDVREQAVWALGNVAGDSPKCRDLV-L 196 (402)
Q Consensus 131 ~~~-~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~------------~~~~v~~~a~~~L~nl~~~~~~~~~~~-~ 196 (402)
-+. .|+.+|..++.+ .+++..+-+.|++..+-.|+.- ....+|..+..+|.||..++..++..+ -
T Consensus 313 H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs 391 (2195)
T KOG2122|consen 313 HQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCS 391 (2195)
T ss_pred hhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 344 777888888886 8999999999999998887742 235789999999999998776665554 4
Q ss_pred hcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhh--hchHHHHHH-hccCCChhHHHHHHHHHHHhccCCh
Q 015687 197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT--RPALPALER-LIHSNDDEVLTDACWALSYLSDGTN 273 (402)
Q Consensus 197 ~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~L~~-lL~~~~~~v~~~a~~~l~~l~~~~~ 273 (402)
..|++..+|..| .....++....+.+|.||+...+......+ .+-+..|+. .++...+..+..++.+|+||+.+..
T Consensus 392 ~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct 470 (2195)
T KOG2122|consen 392 QRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT 470 (2195)
T ss_pred hhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence 568999999999 666668888999999999988643333333 344444444 4566677888999999999998877
Q ss_pred HHHHHHHHh-CcHHHHHHhcCCCC----hhhHHHHHHHHHHhhc---CChHHHHHHHhCCChHHHHHHhcCCCchhHHHH
Q 015687 274 DKIQAVIEA-GVCPRLVELLRHPS----PSVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 345 (402)
Q Consensus 274 ~~~~~~~~~-~~i~~L~~~L~~~~----~~v~~~a~~~l~nl~~---~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~ 345 (402)
+....++.- |++..|+..|.... -.+.+.+-.+|.|+.. .+..+++.+.+++.|..|++.|++. +-.+..+
T Consensus 471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSN 549 (2195)
T KOG2122|consen 471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSN 549 (2195)
T ss_pred ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeec
Confidence 666666654 89999999997652 4677887777777654 4566888889999999999999998 9999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 346 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
+|.+|+||.+.+++..+.+.+.|.++.|.+++.+.+..+..-++.+|.|+...
T Consensus 550 aCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 550 ACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred chhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999764
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-14 Score=136.68 Aligned_cols=320 Identities=19% Similarity=0.229 Sum_probs=248.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
..+.+...|.++++.++..++..+.+++... ....+.+.+.++++.++.++.+++ ..+...|+.+|.+++.. +...+
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~~~i~~~L~~~d-~~Va~~A~~~L~~l~~~-~~~~~ 154 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNELLPLIIQCLRDPD-LSVAKAAIKALKKLASH-PEGLE 154 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHHHHHHHHHcCCc-HHHHHHHHHHHHHHhCC-chhHH
Confidence 3577788999999999999999999987543 444566788999999999999999 89999999999999986 56667
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.+++.+.++.|..++..+++.+|-.+..++.+++..++.....+.+.|+++.++..+ .+.|.-++.+++.++..|+..+
T Consensus 155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL-~~dDiLvqlnalell~~La~~~ 233 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKEL-DSDDILVQLNALELLSELAETP 233 (503)
T ss_pred HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHh-cCccHHHHHHHHHHHHHHHcCh
Confidence 788888899999999988999999999999999999999999999999999999999 5689999999999999999976
Q ss_pred CCCchhhhhchHHHHHHhccCC--Ch---h-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHH
Q 015687 232 PQPLFEQTRPALPALERLIHSN--DD---E-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~--~~---~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~ 305 (402)
.........++++.|..++.+. |+ . .....+...++++...+..+-... ..++..+..++.+.+...+..|+.
T Consensus 234 ~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~d 312 (503)
T PF10508_consen 234 HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFD 312 (503)
T ss_pred hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHH
Confidence 6666666689999999999654 33 1 233444666777764333221111 245667777788899999999999
Q ss_pred HHHHhhcCChHHHHHH-HhC-C----ChHHHHHHhcCCCchhHHHHHHHHHHHHhcC----CHHHHHHHH-------HcC
Q 015687 306 TVGNIVTGDDMQTQCI-INH-Q----ALPCLLDLLTQNYKKSIKKEACWTISNITAG----NVNQIQAII-------EAG 368 (402)
Q Consensus 306 ~l~nl~~~~~~~~~~i-~~~-~----~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~----~~~~~~~l~-------~~~ 368 (402)
++|.+++.. +....+ ... + ++..+.....++ ..++|..+..+++++... ..+.+..+. ..+
T Consensus 313 tlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~-~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~ 390 (503)
T PF10508_consen 313 TLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSG-STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGS 390 (503)
T ss_pred HHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCC
Confidence 999999644 455545 332 2 344445555566 778999999999999642 122222222 123
Q ss_pred CHH-HHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 369 IIG-PLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 369 ~i~-~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
-.. .++.+++.+=+++|..|...|..++.+
T Consensus 391 ~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 391 PLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred chHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 344 777778777799999999999999876
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7e-16 Score=145.93 Aligned_cols=282 Identities=20% Similarity=0.206 Sum_probs=220.5
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--hh
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK--CR 192 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~~ 192 (402)
-+|..+.+|.+.+ +.+|..|+.-+-.++.++.+.+..+.+.|+|+.|+.+|.+.+.+++.+|+++|.||..+... .+
T Consensus 234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 3788899999988 89999999999999999999999999999999999999999999999999999999976654 77
Q ss_pred HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccC--------------CChhHH
Q 015687 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS--------------NDDEVL 258 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~--------------~~~~v~ 258 (402)
-.+.+.++++.+++++....|.++++.++.+|+||++. +......+...++.|..-+-. .+.++.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 88899999999999997778999999999999999988 344444556666666554311 136788
Q ss_pred HHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcC------CCChhhHHHHHHHHHHhhcCCh-----HHH--------
Q 015687 259 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLR------HPSPSVLIPALRTVGNIVTGDD-----MQT-------- 318 (402)
Q Consensus 259 ~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~~L~------~~~~~v~~~a~~~l~nl~~~~~-----~~~-------- 318 (402)
.++..+|.|++....+..+.+.+. |.++.|+..+. +.+.+-.++|+-++.|+...-. .+.
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 999999999998776666767665 89999998874 3456677888888888864221 000
Q ss_pred ------------------HH----------------------HHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCC-
Q 015687 319 ------------------QC----------------------IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN- 357 (402)
Q Consensus 319 ------------------~~----------------------i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~- 357 (402)
.. +....++..-..+|....++.+.+.++.+|-|++++.
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 00 0011123333344443337889999999999999853
Q ss_pred --HHH-HHHH-HHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 358 --VNQ-IQAI-IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 358 --~~~-~~~l-~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
... ...+ ....++|.|+++|+.++.+|.+.++.+|.|++.+
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 222 2333 3577899999999999999999999999999865
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-15 Score=148.84 Aligned_cols=267 Identities=19% Similarity=0.175 Sum_probs=226.2
Q ss_pred HHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC-----------CHHHHHHHHHHHHHhhcCCCcchHHHHh-CC
Q 015687 90 DATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-----------FPQLQFEAAWALTNIASGTSENTRVVID-HG 157 (402)
Q Consensus 90 ~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~-----------~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g 157 (402)
.|+..|.++ |.+ ++....|-+.|++..+-+||.-.. +..++..|..+|+||..++..++..+.. -|
T Consensus 317 aA~~~lMK~-SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 317 AALCTLMKL-SFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred HHHHHHHHh-hcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 667777776 554 688889999999999888875321 2478999999999999998777777665 48
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC--CCC
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAG-DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQP 234 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~ 234 (402)
.+..++..|.+...++.+..+.+|.||+= -+...+..+-+.|.+..|+........+..+..++.+||||+.+. ...
T Consensus 395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA 474 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA 474 (2195)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence 99999999999889999999999999983 334467788888999999998767777788999999999999887 455
Q ss_pred chhhhhchHHHHHHhccCC----ChhHHHHHHHHHHHhcc---CChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 015687 235 LFEQTRPALPALERLIHSN----DDEVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (402)
Q Consensus 235 ~~~~~~~~l~~L~~lL~~~----~~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l 307 (402)
.+..+.|++-+|+.+|... .-.|++.+-.+|.|++. ..++..+.+.+.+++..|+..|++.+-.+..++|.+|
T Consensus 475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL 554 (2195)
T KOG2122|consen 475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL 554 (2195)
T ss_pred hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence 6677799999999999654 45688888888877653 4556678899999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015687 308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359 (402)
Q Consensus 308 ~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 359 (402)
+||...+++..+++++.|.++.|..++.+. ...+-..++.+|.|+....|.
T Consensus 555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred hhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCCch
Confidence 999999999999999999999999999998 889999999999999986543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.8e-15 Score=129.01 Aligned_cols=227 Identities=14% Similarity=0.122 Sum_probs=181.6
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
-++.|..+|.+.+ ..++..|+++|..+... .+++.+..++.++++.+|..++++|+.+-.....
T Consensus 24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~~-----------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHN-SLKRISSIRVLQLRGGQ-----------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred cHHHHHHHHhCCC-HHHHHHHHHHHHhcCcc-----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 3788999999988 89999999999987642 4678888899999999999999999998543211
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChH
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~ 274 (402)
....++.|..++..++++.++..++.+|.+++...+.. ...+++.+...+.++++.|+..++++|+.+.. .
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~- 158 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E- 158 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence 11256677777658889999999999999997654222 23456667788888999999999999987642 1
Q ss_pred HHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 015687 275 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (402)
Q Consensus 275 ~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 354 (402)
..++.|+.+|.++++.++..|+.+||.+..+++ .+++.|+..+.+. ++.||..|+|.|+.+-
T Consensus 159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK 220 (280)
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence 247899999999999999999999999954444 4566799999888 9999999999999863
Q ss_pred cCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 355 AGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 355 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
++. ++|.|+..|++++ ++..|+.+|+++..
T Consensus 221 --~~~---------av~~Li~~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 221 --DKR---------VLSVLIKELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred --Chh---------HHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence 333 6889999998766 67889999998754
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.9e-15 Score=128.76 Aligned_cols=309 Identities=16% Similarity=0.154 Sum_probs=222.1
Q ss_pred CHHHHHHHHHHHHHHhccC--CCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHH
Q 015687 84 DRNIQLDATTQFRKLLSIE--RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI 161 (402)
Q Consensus 84 ~~~~~~~a~~~l~~l~s~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 161 (402)
+..+...+..++......+ ++...+.-++.+++..|.+..++++ .++..+..++|+|+|.++.+.|..+.+.|+-..
T Consensus 55 ~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqi 133 (604)
T KOG4500|consen 55 SDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQI 133 (604)
T ss_pred cchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCcee
Confidence 3444444455555553211 1222333456788888888888887 899999999999999999999999999999888
Q ss_pred HHHhhCC-------CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc-cchhhHHHHHHHHHHHHhhhCCC-
Q 015687 162 FVRLLSS-------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKP- 232 (402)
Q Consensus 162 L~~lL~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~-~~~~~~~~~~a~~~L~~l~~~~~- 232 (402)
++.+|+. .+.+....+...|.|..-++.+.+..+++.|+++.|...+. ...+....+.....+.|+.+-..
T Consensus 134 vid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e 213 (604)
T KOG4500|consen 134 VIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE 213 (604)
T ss_pred hHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH
Confidence 8887764 23467778889999999999999999999999999988873 23444444554444444433211
Q ss_pred -CCchhhhhchHHHHHHhccC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CC-------hhhHHH
Q 015687 233 -QPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PS-------PSVLIP 302 (402)
Q Consensus 233 -~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-~~-------~~v~~~ 302 (402)
-.++.....+.-.++++|.. -.+++.+-++..+.+.++++.-. -.+.+.|.+..+++++.. .. -.....
T Consensus 214 ~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~ 292 (604)
T KOG4500|consen 214 MLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR 292 (604)
T ss_pred hhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHHHh
Confidence 12222223445556666644 35667778888889988776544 447888999999988854 21 123334
Q ss_pred HHHHHHHhhcCChHHHHHHHhCC-ChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--
Q 015687 303 ALRTVGNIVTGDDMQTQCIINHQ-ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-- 379 (402)
Q Consensus 303 a~~~l~nl~~~~~~~~~~i~~~~-~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-- 379 (402)
++..+.-+..|++ ..+++...+ +++.+...+.+. +....-.+..+++|++..+ ++...+++.|.+..|++++..
T Consensus 293 ~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~~~ 369 (604)
T KOG4500|consen 293 IAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQEK 369 (604)
T ss_pred hhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444545555544 556666555 899999999999 9999999999999999864 556678899999999999853
Q ss_pred ---CCHHHHHHHHHHHHHhhc
Q 015687 380 ---AEFEIKKEAAWAISNATS 397 (402)
Q Consensus 380 ---~~~~v~~~a~~aL~nl~~ 397 (402)
++..++..++.||.|++.
T Consensus 370 ~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 370 DVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred CCCccchhHHHHHHHHHhccc
Confidence 678899999999999875
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-15 Score=137.98 Aligned_cols=318 Identities=19% Similarity=0.246 Sum_probs=210.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhH-Hhh---cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCC
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINE-VIQ---SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT 146 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~-~~~---~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~ 146 (402)
+.+|.|.+.|.++|...+.-|..+|.++.... ....+. +.. .-.+|.|+++.++++ +.+|..|+.|+..+.-..
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS-AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhh-HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecC
Confidence 35799999999999989999999999986432 111110 000 125899999999998 999999999998876543
Q ss_pred CcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHH
Q 015687 147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (402)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 226 (402)
++....-++ ..++.+..+-.+++++||.+.+.++..|..-.+. +-.-.-.++++.++... ++.|+.+.-.||.++..
T Consensus 206 ~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~t-qd~dE~VALEACEFwla 282 (885)
T KOG2023|consen 206 TQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRT-QDVDENVALEACEFWLA 282 (885)
T ss_pred cHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHc-cCcchhHHHHHHHHHHH
Confidence 333222222 4567777777889999999999999999865542 11111224566666665 67788899999999999
Q ss_pred hhhCCCCC--chhhhhchHHHHHHhccCCChhH--HH-------------------------------------------
Q 015687 227 FCRGKPQP--LFEQTRPALPALERLIHSNDDEV--LT------------------------------------------- 259 (402)
Q Consensus 227 l~~~~~~~--~~~~~~~~l~~L~~lL~~~~~~v--~~------------------------------------------- 259 (402)
++...... -......++|+|+.-+..++.++ ..
T Consensus 283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 283 LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence 99885111 12344677777776443221110 00
Q ss_pred ---HHHHHHHHhccCChHHHHHHHHhCcH----HHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC--CChHHH
Q 015687 260 ---DACWALSYLSDGTNDKIQAVIEAGVC----PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCL 330 (402)
Q Consensus 260 ---~a~~~l~~l~~~~~~~~~~~~~~~~i----~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~--~~l~~L 330 (402)
..-|-|..++...-+....+....++ |.|-+.|.++.+.+++.++.++|.++.|.-.. +..+ .++|.+
T Consensus 363 dD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g---~~p~LpeLip~l 439 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQG---FVPHLPELIPFL 439 (885)
T ss_pred ccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhh---cccchHHHHHHH
Confidence 01133333322222222223333344 44555567889999999999999999875432 3332 468999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 331 LDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 331 ~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
+.+|++. .+-||.-+||+|+..+.. ..+..+..... ++..|++.+-+++.+||++||.|+..+-+.
T Consensus 440 ~~~L~DK-kplVRsITCWTLsRys~wv~~~~~~~~f~p-vL~~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 440 LSLLDDK-KPLVRSITCWTLSRYSKWVVQDSRDEYFKP-VLEGLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred HHHhccC-ccceeeeeeeeHhhhhhhHhcCChHhhhHH-HHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 9999998 999999999999988752 11112222222 566667777789999999999999887654
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=112.48 Aligned_cols=118 Identities=34% Similarity=0.507 Sum_probs=111.3
Q ss_pred HHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 015687 279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358 (402)
Q Consensus 279 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 358 (402)
+++.|+++.+++++.+.++.++..+++++++++...+.....+++.|++|.+.+++.++ ++.++..++|+|+|++.+.+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56789999999999999999999999999999999888889899999999999999998 99999999999999999888
Q ss_pred HHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 359 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
.....+.+.|+++.|++++.+++.++++.|+|+|.|++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 888888899999999999999999999999999999974
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-14 Score=121.58 Aligned_cols=197 Identities=19% Similarity=0.239 Sum_probs=164.1
Q ss_pred HhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q 015687 110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 189 (402)
Q Consensus 110 ~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~ 189 (402)
.++.+-++.|+.+|+..+++.++..++.++++.+.. +..+..+.+.|+++.+..+|.++++.+++.|+++|.|++.+.+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 356667899999999776699999999999998775 8899999999999999999999999999999999999998876
Q ss_pred hhhHHHHhcCChHHHHHHhccc-hhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHh
Q 015687 190 KCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 268 (402)
Q Consensus 190 ~~~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l 268 (402)
.+..+-. .++.+++.+... -+..++..++.+|.||+..... ...+...+|.++++|.+++..++..++++|.||
T Consensus 87 -n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 -NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred -hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3444432 566777655343 4788999999999999866322 333467899999999999999999999999999
Q ss_pred ccCChHHHHHHHHhCcHHHHHHhcCCC-ChhhHHHHHHHHHHhhcC
Q 015687 269 SDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~L~~~L~~~-~~~v~~~a~~~l~nl~~~ 313 (402)
+..+. ....++..+++..++.++... +.++...++..+.|+..+
T Consensus 162 S~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 162 SENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred ccCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 97765 456788889999999999765 678899999999999654
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.2e-13 Score=119.38 Aligned_cols=322 Identities=14% Similarity=0.166 Sum_probs=243.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
-+..+++.|..++.++.......|.++ |.- .++...+.+.|++..|++++...+ ++++...+..+.|++.+ ...+.
T Consensus 305 iV~mLVKaLdr~n~~Ll~lv~~FLkKL-SIf-~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD-~glr~ 380 (791)
T KOG1222|consen 305 IVAMLVKALDRSNSSLLTLVIKFLKKL-SIF-DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFD-SGLRP 380 (791)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHh-hhh-ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhcccc-ccccH
Confidence 467889999999988888888888887 443 567778999999999999999998 99999999999999986 78899
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.++..|.+|.+..++.+... ...|+..+..++.++. .+..+....+++.+...+..+.+..+-.......-|||-+.
T Consensus 381 KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk 457 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK 457 (791)
T ss_pred HHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence 99999999999999986432 3457788888887765 57777777788888887756666665555555555666554
Q ss_pred CCCchhhhh-------------------------------------chHHHHHHhcc-CCChhHHHHHHHHHHHhccCCh
Q 015687 232 PQPLFEQTR-------------------------------------PALPALERLIH-SNDDEVLTDACWALSYLSDGTN 273 (402)
Q Consensus 232 ~~~~~~~~~-------------------------------------~~l~~L~~lL~-~~~~~v~~~a~~~l~~l~~~~~ 273 (402)
.+.+..... ..+..|...+. +++++....++.+++++.-.+-
T Consensus 458 RNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl 537 (791)
T KOG1222|consen 458 RNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL 537 (791)
T ss_pred ccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC
Confidence 322221111 11112222232 2345677788899999987666
Q ss_pred HHHHHHHHhCcHHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-CchhHHHHHHHHH
Q 015687 274 DKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTI 350 (402)
Q Consensus 274 ~~~~~~~~~~~i~~L~~~L~~~--~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L 350 (402)
+..+.+.+..++|.+-..|... ..++....+.++|-++.. ......+..+|+++.++++|+.. ++.++.....+++
T Consensus 538 dw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF 616 (791)
T KOG1222|consen 538 DWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVF 616 (791)
T ss_pred CHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHH
Confidence 6766677778999999988643 345677777788887764 33555566779999999999764 3567778888888
Q ss_pred HHHhcCCHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCCCCC
Q 015687 351 SNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSSW 402 (402)
Q Consensus 351 ~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~ 402 (402)
..+..+ ...+..++ +...-..|++++++.+..+|+.+-.+|.-++.+...|
T Consensus 617 ~Q~l~H-e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EW 668 (791)
T KOG1222|consen 617 LQFLKH-ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEW 668 (791)
T ss_pred HHHHHH-HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHH
Confidence 888876 44455555 5667789999999999999999999999999988877
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-13 Score=118.02 Aligned_cols=227 Identities=20% Similarity=0.232 Sum_probs=179.3
Q ss_pred HhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC
Q 015687 154 IDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 154 ~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
.+.+-++.|+.+|+. .++.+++.++.+++|.+..+ ..++.+.+.|+++.+..++ .++++.++..|++++.|++...+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCChh
Confidence 566778999999985 78999999999999987765 4799999999999999999 77899999999999999998743
Q ss_pred CCchhhhhchHHHHHHhccC--CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 233 QPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 233 ~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
+. ..+...++.+.+.+.+ -|.+++..++++|.+|+..++. +.++ .+.++.++.+|.+++..++..++++|.|+
T Consensus 87 n~--~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 NQ--EQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hH--HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 33 3344567766665533 3788999999999999865543 3344 34689999999999999999999999999
Q ss_pred hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC--CH-----------HHHHHHH-HcC-CHHHHHH
Q 015687 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--NV-----------NQIQAII-EAG-IIGPLVN 375 (402)
Q Consensus 311 ~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~-----------~~~~~l~-~~~-~i~~L~~ 375 (402)
+.. +..+..++..+++..++.+++.+.+.++...+.+.+.||..+ .+ +....++ +.+ +...|..
T Consensus 162 S~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~ 240 (254)
T PF04826_consen 162 SEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA 240 (254)
T ss_pred ccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence 985 556778999999999999998876788999999999999653 11 1112222 222 5667777
Q ss_pred HhccCCHHHHHHH
Q 015687 376 LLLNAEFEIKKEA 388 (402)
Q Consensus 376 ll~~~~~~v~~~a 388 (402)
+...+|++||..+
T Consensus 241 l~~h~d~ev~~~v 253 (254)
T PF04826_consen 241 LANHPDPEVKEQV 253 (254)
T ss_pred HHcCCCHHHhhhc
Confidence 7777888888653
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-14 Score=109.90 Aligned_cols=119 Identities=35% Similarity=0.621 Sum_probs=111.0
Q ss_pred HHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 015687 109 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188 (402)
Q Consensus 109 ~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 188 (402)
.+++.|+++.|++++.+++ +.++..++++|++++.++++....+++.|+++.++.++.++++.++..++|+|+|++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4668899999999999988 899999999999999988899999999999999999999999999999999999999998
Q ss_pred chhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 189 ~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
+..+..+.+.|+++.++..+ ...+..+++.++|+|.+|+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 87888889999999999999 66688999999999999974
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-12 Score=134.14 Aligned_cols=259 Identities=19% Similarity=0.201 Sum_probs=169.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.++.|++.|.++++.++..|+..|..+.. .+.++.|+..|.+++ +.++..|+..|..+....+
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~---- 684 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP---- 684 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC----
Confidence 56889999999999999999999988732 225788899998887 8999999999988754211
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc------------hhhHH----HHhcCChHHHHHHhccchhhH
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP------------KCRDL----VLSNGALMPLLAQFNEHAKLS 215 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~------------~~~~~----~~~~g~i~~L~~~l~~~~~~~ 215 (402)
..+.|...|.++++.+|..++.+|+.+....+ ..|.. +...+..+.|...+ .+++..
T Consensus 685 ------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l-~D~~~~ 757 (897)
T PRK13800 685 ------PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAA-TDENRE 757 (897)
T ss_pred ------chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHh-cCCCHH
Confidence 12344555555556666666555555421110 00000 00001122333444 455556
Q ss_pred HHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC
Q 015687 216 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 295 (402)
Q Consensus 216 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~ 295 (402)
++..++.+|..+....+ ..++.|..++.++|+.++..++.+|..+..... +.+.+...|.++
T Consensus 758 VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~----------~~~~l~~aL~d~ 819 (897)
T PRK13800 758 VRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAELGCPPD----------DVAAATAALRAS 819 (897)
T ss_pred HHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch----------hHHHHHHHhcCC
Confidence 66666666655543311 225667777777777777777777777643211 124566677777
Q ss_pred ChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Q 015687 296 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN 375 (402)
Q Consensus 296 ~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ 375 (402)
++.+|..|+.+|+.+.. ...++.|..+|.++ +..||..|+++|+.+ .+++. ..+.|..
T Consensus 820 d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~-~~~VR~~A~~aL~~~-~~~~~---------a~~~L~~ 877 (897)
T PRK13800 820 AWQVRQGAARALAGAAA-----------DVAVPALVEALTDP-HLDVRKAAVLALTRW-PGDPA---------ARDALTT 877 (897)
T ss_pred ChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCC-CHHHHHHHHHHHhcc-CCCHH---------HHHHHHH
Confidence 77888888888876642 13457899999988 999999999999987 33344 3566778
Q ss_pred HhccCCHHHHHHHHHHHHH
Q 015687 376 LLLNAEFEIKKEAAWAISN 394 (402)
Q Consensus 376 ll~~~~~~v~~~a~~aL~n 394 (402)
.+++.+.+||.+|..+|..
T Consensus 878 al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 878 ALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHhCCCHHHHHHHHHHHhh
Confidence 8999999999999999864
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.6e-12 Score=124.66 Aligned_cols=321 Identities=19% Similarity=0.208 Sum_probs=224.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
-++-+.+..+|+++..+..|+..|..+...-.+.....+ ..+.+.|.+.+.+++. .++..|+++++.++...+..+.
T Consensus 119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~-~vr~~a~rA~~a~~~~~~~~~~ 195 (1075)
T KOG2171|consen 119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSS-PVRVAAVRALGAFAEYLENNKS 195 (1075)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHhccchH
Confidence 356667777899999999999999988543211111111 1256777888888874 4999999999998876543332
Q ss_pred HHHh-CCchHHHHHhh----CCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc-chhhHHHHHHHHHHH
Q 015687 152 VVID-HGAVPIFVRLL----SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLS 225 (402)
Q Consensus 152 ~~~~-~g~i~~L~~lL----~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~-~~~~~~~~~a~~~L~ 225 (402)
.... ...+|.++..+ ...+.+....++.+|..++...|.+-...+.. ++...+.+..+ .-+..++..|+.++.
T Consensus 196 ~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~~ALe~iv 274 (1075)
T KOG2171|consen 196 EVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSIRHLALEFLV 274 (1075)
T ss_pred HHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 2222 13455555544 45677777788888888887666443222221 34444444422 235666666666666
Q ss_pred HhhhCCCCCc----------------------------------------------------------hhhhhchHHHHH
Q 015687 226 NFCRGKPQPL----------------------------------------------------------FEQTRPALPALE 247 (402)
Q Consensus 226 ~l~~~~~~~~----------------------------------------------------------~~~~~~~l~~L~ 247 (402)
.+++..|... ......+++.+-
T Consensus 275 s~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~ 354 (1075)
T KOG2171|consen 275 SLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALE 354 (1075)
T ss_pred HHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHH
Confidence 6655411000 001123445555
Q ss_pred HhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCCh
Q 015687 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL 327 (402)
Q Consensus 248 ~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l 327 (402)
.++.+.+..-+..++.+|+.++.+..+.....+ ..+++.++..|.++.+.||..|+.++|.+++.-....+.-....++
T Consensus 355 ~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~ 433 (1075)
T KOG2171|consen 355 AMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLP 433 (1075)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhcc
Confidence 667888888999999999999999887655433 3578888888999999999999999999999877777777778899
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHH-HHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 328 PCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIG-PLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 328 ~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~-~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
|.|+..+.+..++.|+..|+-++.|+..+ ..+.+...++. ++. .|..+++++.+.+++.|..+|+..|..
T Consensus 434 ~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~-lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 434 PALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDG-LMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 99999999887889999999999999984 55556666654 666 555556678899999999999998764
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.7e-12 Score=111.34 Aligned_cols=323 Identities=13% Similarity=0.052 Sum_probs=243.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC---C---CHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD---D---FPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~---~---~~~~~~~a~~~L~~l~~ 144 (402)
+.+..+.+...|+|.++-.+..++|.++...+ ++.+..+.+.|+-..+++.|+.. + +.+....+...|.|..-
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 45677888888898999999999999996654 88889999999977777777642 1 24566677888999998
Q ss_pred CCCcchHHHHhCCchHHHHHhhC--CCCHHHHHHHHHHHHHhhCC-CchhhHHHHhcCChHHHHHHhccchhhHHHHHHH
Q 015687 145 GTSENTRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 221 (402)
Q Consensus 145 ~~~~~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~ 221 (402)
++.+.+..+.+.|+++.|...+. -.+....+...-..+|+..- .+...+...+......+++++.....+++...+.
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 88999999999999999988765 36777888888888887642 2223455666677888888886667888888899
Q ss_pred HHHHHhhhCCCCCchhhhhchHHHHHHhccC-C-------ChhHHHHHHHHHHHhccCChHHHHHHHHhC-cHHHHHHhc
Q 015687 222 WTLSNFCRGKPQPLFEQTRPALPALERLIHS-N-------DDEVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELL 292 (402)
Q Consensus 222 ~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-~-------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~i~~L~~~L 292 (402)
..|...+.++...-...-.|.+..+..+++. . +......++....-+..+++. .+.+...+ +++.+..++
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES-MQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHHh
Confidence 9999988886333333335677777777644 1 123344455555555555554 46677666 899999999
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC----CchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 015687 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITAGNVNQIQAIIEAG 368 (402)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 368 (402)
.+++......+.-+|||++..++ ....+++.|++..|+.++... .+..++..++.+|.|++-- ......++..|
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aG 402 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAG 402 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccc
Confidence 99999999999999999999666 455577889999999988542 1456778889999999873 23356788899
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 369 IIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 369 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
+.+.++..++...|.++..-..++.-+..
T Consensus 403 vteaIL~~lk~~~ppv~fkllgTlrM~~d 431 (604)
T KOG4500|consen 403 VTEAILLQLKLASPPVTFKLLGTLRMIRD 431 (604)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHh
Confidence 99999999999888887776666665544
|
|
| >PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-15 Score=109.55 Aligned_cols=88 Identities=45% Similarity=0.624 Sum_probs=60.3
Q ss_pred CCccHHHhhhccC-CCCchHHhhhhHHHHHHHHHHhhhHHHHhhhhccccCCCCCc-c---hh-hhhhhhhccHHHHHHh
Q 015687 6 NARTEVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT-N---SA-ALDNKKLESLPAMVAG 79 (402)
Q Consensus 6 ~~~~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~kr~~~~~~~~~~~-~---~~-~~~~~~~~~i~~l~~~ 79 (402)
+...+.|++.||+ |++++|+|+||+++.|+|||+||+|.|.|||++........+ . .. .........+|.++..
T Consensus 3 ~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 82 (97)
T PF01749_consen 3 SKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAG 82 (97)
T ss_dssp ----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHH
T ss_pred ccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHh
Confidence 4467789999999 699999999999999999999999999999998654433211 0 01 1012223467899999
Q ss_pred hcCCCHHHHHHHHH
Q 015687 80 VWSDDRNIQLDATT 93 (402)
Q Consensus 80 l~s~~~~~~~~a~~ 93 (402)
+.|+|+..++.|..
T Consensus 83 v~S~d~~~ql~Atq 96 (97)
T PF01749_consen 83 VNSDDPEVQLEATQ 96 (97)
T ss_dssp HTSSCHHHHHHHHH
T ss_pred cCCCCHHHHHHhhC
Confidence 99999999999875
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C .... |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-11 Score=112.65 Aligned_cols=320 Identities=11% Similarity=0.083 Sum_probs=225.7
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhh-----cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCC
Q 015687 73 LPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQ-----SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT 146 (402)
Q Consensus 73 i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~-----~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~ 146 (402)
...+++.+.. ..++.....+..+..++... +.....+.+ .+....++.+|..++ ..++..|+.+|+.++...
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhcC
Confidence 4566677764 55778888888888888753 333344544 356678888998877 799999999999998754
Q ss_pred CcchHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccch-hhHHHHHHHHHH
Q 015687 147 SENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTL 224 (402)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~-~~~~~~~a~~~L 224 (402)
+.........-.++.|...+.+ .+...+..++.+|..+....+ +|..+.+.++++.|+.+|.... +.+++..++.++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 4332211111133455555554 347778888999999987766 7999999999999999996555 678999999999
Q ss_pred HHhhhCCCCCchhhhhchHHHHHHhccCC-ChhHHHHHHHHHHHhccCC------hHHHHHHHHhCcHHHHHHhcCC---
Q 015687 225 SNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGT------NDKIQAVIEAGVCPRLVELLRH--- 294 (402)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~i~~L~~~L~~--- 294 (402)
+-|+...+........+++|.++.+++.. .+++..-++.++.|+...+ ......+++.|+.+ ++..|..
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~ 290 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKY 290 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCC
Confidence 99998864333333468999999999765 6789999999999998643 12334567777655 4444432
Q ss_pred CChhhHHHHHHHHHHh--------hc--------------CCh---------HHHHHHHhC--CChHHHHHHhcCCCchh
Q 015687 295 PSPSVLIPALRTVGNI--------VT--------------GDD---------MQTQCIINH--QALPCLLDLLTQNYKKS 341 (402)
Q Consensus 295 ~~~~v~~~a~~~l~nl--------~~--------------~~~---------~~~~~i~~~--~~l~~L~~ll~~~~~~~ 341 (402)
.|+++.. .+..+... ++ -+| ++...+.+. .++..|+++|..+.++.
T Consensus 291 ~DedL~e-dl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 291 DDEDLTD-DLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CcHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 2333221 11111111 11 011 222333333 45788999996554888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 342 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 342 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
+..-||.=++.++.+.|.....+-+-|+=..+++++.++|++|+.+|+.|+..+..
T Consensus 370 ~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 370 ILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred eeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999888877777789999999999999999999999999988754
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.3e-12 Score=123.27 Aligned_cols=318 Identities=16% Similarity=0.170 Sum_probs=224.4
Q ss_pred HHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 74 PAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 74 ~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
..++..+.++ .+.++..-+..+..+++.. -+. --.++++.|.+..++++ +..|+.|+.+|..+...-...-..
T Consensus 82 s~lL~~~~~E~~~~vr~k~~dviAeia~~~-l~e----~WPell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 82 SSLLEIIQSETEPSVRHKLADVIAEIARND-LPE----KWPELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhc-ccc----chHHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccch
Confidence 4566666664 4677777778888887654 222 22447888999999998 899999999999988753332221
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhc-CChHHHHHHhc---cchhhHHHHHHHHHHHHhh
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN-GALMPLLAQFN---EHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~-g~i~~L~~~l~---~~~~~~~~~~a~~~L~~l~ 228 (402)
.+. .+.+.|.+-+.+++..||-.++++++.++...+......... ..+|.++..+. +..|.+....+..+|..+.
T Consensus 156 ~~~-~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~ 234 (1075)
T KOG2171|consen 156 HLD-DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL 234 (1075)
T ss_pred hHH-HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH
Confidence 121 355666667777777799999999999986553222222221 25676777663 3456667788888888888
Q ss_pred hCCCCCchhhhhchHHHHHHhccCC--ChhHHHHHHHHHHHhccCChHHHH-----------------------------
Q 015687 229 RGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQ----------------------------- 277 (402)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~~l~~~~~~~~~----------------------------- 277 (402)
...|..-......++.....+..+. ++.+|..|+..+..++...+...+
T Consensus 235 e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~ 314 (1075)
T KOG2171|consen 235 ESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNE 314 (1075)
T ss_pred hhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccc
Confidence 8766555555566666666666544 566777777666655542110000
Q ss_pred ----------------HHHH-----hC---c----HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHH
Q 015687 278 ----------------AVIE-----AG---V----CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPC 329 (402)
Q Consensus 278 ----------------~~~~-----~~---~----i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~ 329 (402)
..++ -| + ++.+-.++.++++.-|..++.+|+.++.|..+.....++ .+++.
T Consensus 315 d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~ 393 (1075)
T KOG2171|consen 315 DDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPI 393 (1075)
T ss_pred cccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHH
Confidence 0011 01 2 344445568899999999999999999999888776555 78999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhcCCC
Q 015687 330 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 330 L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~ 400 (402)
++..|+++ .|.||-.||.+++.++.+-...++.-...-++|.|+..+.+ .+++|+..|+.++-|+.....
T Consensus 394 Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~ 464 (1075)
T KOG2171|consen 394 VLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD 464 (1075)
T ss_pred HHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc
Confidence 99999999 99999999999999999766667777766688899999987 567999999999999987653
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.8e-11 Score=109.19 Aligned_cols=321 Identities=16% Similarity=0.163 Sum_probs=214.0
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhcCCCcchHHH
Q 015687 75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVV 153 (402)
Q Consensus 75 ~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~ 153 (402)
.++..+...+|+....|.....+.+.+. +++...+++.|.++.++.+++..+ ..+.+.+.+-++...+.+.......+
T Consensus 13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence 3445556778888888999999987765 566667999999999999998654 35777778888888888888889999
Q ss_pred HhCCchHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhhHHH---HhcCChHHHHHHhccchhhHHHHHHHH-------
Q 015687 154 IDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLV---LSNGALMPLLAQFNEHAKLSMLRNATW------- 222 (402)
Q Consensus 154 ~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~---~~~g~i~~L~~~l~~~~~~~~~~~a~~------- 222 (402)
.+.+.++.|.+++.+++ ..+++..+.++.++...++. .+.. ....++..+..++ ..+.......-+.
T Consensus 92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~-q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~ 169 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKY-QDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSS 169 (678)
T ss_pred HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccc-cccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccc
Confidence 99999999999999988 89999999999999866542 1211 1112233333222 1111111111111
Q ss_pred -------------------------------HHHHhhhCC----CCCch-hhh------hchHH--HHHHhccCCChhHH
Q 015687 223 -------------------------------TLSNFCRGK----PQPLF-EQT------RPALP--ALERLIHSNDDEVL 258 (402)
Q Consensus 223 -------------------------------~L~~l~~~~----~~~~~-~~~------~~~l~--~L~~lL~~~~~~v~ 258 (402)
++..++++. .++.. ... .++.+ .+.+++++.+...+
T Consensus 170 ~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~ 249 (678)
T KOG1293|consen 170 TKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSER 249 (678)
T ss_pred cchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHH
Confidence 222222211 01111 111 11111 12223333333333
Q ss_pred HHHHHHHHHhccCC------------------------------------------------------------------
Q 015687 259 TDACWALSYLSDGT------------------------------------------------------------------ 272 (402)
Q Consensus 259 ~~a~~~l~~l~~~~------------------------------------------------------------------ 272 (402)
-.++.++.++...+
T Consensus 250 l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~ 329 (678)
T KOG1293|consen 250 LRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKT 329 (678)
T ss_pred HHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhh
Confidence 33444443332200
Q ss_pred -------------------------------------------------------------hHHHH-------------H
Q 015687 273 -------------------------------------------------------------NDKIQ-------------A 278 (402)
Q Consensus 273 -------------------------------------------------------------~~~~~-------------~ 278 (402)
.+... .
T Consensus 330 ~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~ 409 (678)
T KOG1293|consen 330 TTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVS 409 (678)
T ss_pred HHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHH
Confidence 00000 0
Q ss_pred HH-----HhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHH
Q 015687 279 VI-----EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (402)
Q Consensus 279 ~~-----~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl 353 (402)
.. ...+.+++++++..++..+...++.+|.|++..-......++..|+++.+..++.+. ++.+|..+.|+|.++
T Consensus 410 aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~-~~n~r~~~~~~Lr~l 488 (678)
T KOG1293|consen 410 ALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDP-DFNSRANSLWVLRHL 488 (678)
T ss_pred HHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCC-CchHHHHHHHHHHHH
Confidence 01 224677888888888888999999999999987777788899999999999999999 999999999999999
Q ss_pred hcCCHHHHHHHHHcCC-HHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 354 TAGNVNQIQAIIEAGI-IGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 354 ~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
.-++.+..+......+ ...+..+.+++++.|++.+...+.|++-++
T Consensus 489 ~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 489 MFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 9876666555444333 456667778899999999999999998763
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.6e-12 Score=116.82 Aligned_cols=273 Identities=15% Similarity=0.182 Sum_probs=192.6
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHh----CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q 015687 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID----HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 189 (402)
Q Consensus 114 g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~ 189 (402)
.++|.|+++|.+++ ...++.|..+|..|++++.+..+.-.. .-.+|.++++.+++++.+|..|+.++..+....+
T Consensus 128 elLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence 36999999999998 788999999999999987665443221 1368999999999999999999999998876554
Q ss_pred hhhHHHHh-cCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHh
Q 015687 190 KCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 268 (402)
Q Consensus 190 ~~~~~~~~-~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l 268 (402)
.. .... ..+++.+..+- .+.+++++.+.|.+|..|....+..-.....++++.+++..++.|++|.-.||.....+
T Consensus 207 qa--l~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 207 QA--LYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred HH--HHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 32 2111 11344444444 78899999999999999999887777777889999999999999999999999998888
Q ss_pred ccCChHHHHHHHH--hCcHHHHHHhcCCCC--------------------------------------------------
Q 015687 269 SDGTNDKIQAVIE--AGVCPRLVELLRHPS-------------------------------------------------- 296 (402)
Q Consensus 269 ~~~~~~~~~~~~~--~~~i~~L~~~L~~~~-------------------------------------------------- 296 (402)
+..+. ....+.. ..++|.|+.-+..++
T Consensus 284 aeqpi-~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 284 AEQPI-CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred hcCcC-cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence 87653 2122221 134455544432110
Q ss_pred ------hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Q 015687 297 ------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 370 (402)
Q Consensus 297 ------~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i 370 (402)
+.+|+....+|.-++.--. +.++. -++|.|-..|.+. +-.+|+.++.+|+.|+.|+-...-.-+- .++
T Consensus 363 dD~~~dWNLRkCSAAaLDVLanvf~---~elL~-~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLi 436 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLANVFG---DELLP-ILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFVPHLP-ELI 436 (885)
T ss_pred ccccccccHhhccHHHHHHHHHhhH---HHHHH-HHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcccchH-HHH
Confidence 2244433333333332111 11111 3455566666666 7789999999999999875443222222 379
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 371 GPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 371 ~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
|.|+.+|.++-+-||.-.||+|+..+.
T Consensus 437 p~l~~~L~DKkplVRsITCWTLsRys~ 463 (885)
T KOG2023|consen 437 PFLLSLLDDKKPLVRSITCWTLSRYSK 463 (885)
T ss_pred HHHHHHhccCccceeeeeeeeHhhhhh
Confidence 999999999999999999999988754
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.2e-11 Score=108.60 Aligned_cols=280 Identities=14% Similarity=0.130 Sum_probs=204.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
....++..|+++|...+..|+..+..+++.. ..........-+++.+...+++++....+..++.+|..+... ++.+.
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~ 179 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRF 179 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHH
Confidence 4567778888999999999999999998754 222111111114456667776554367888999999999986 88999
Q ss_pred HHHhCCchHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 152 VVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
.+.+.++++.|+.+|+. .+..++-.++.+++-++.+.+ ........+.++.++.++.....+.+.+-++.+|.|+..
T Consensus 180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 99999999999999975 356889999999999988766 445666789999999999888899999999999999998
Q ss_pred CCC----CC--chhhhhchHHHHHHhccC---CChhHHHHHHHHHH-------Hhcc------------------C-Ch-
Q 015687 230 GKP----QP--LFEQTRPALPALERLIHS---NDDEVLTDACWALS-------YLSD------------------G-TN- 273 (402)
Q Consensus 230 ~~~----~~--~~~~~~~~l~~L~~lL~~---~~~~v~~~a~~~l~-------~l~~------------------~-~~- 273 (402)
... .. ....+...++.++..|.. .|+++..+.-..-. .++. + ++
T Consensus 259 ~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~ 338 (429)
T cd00256 259 KRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK 338 (429)
T ss_pred cccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch
Confidence 641 11 112234345555555543 46665544322111 1221 1 11
Q ss_pred ---HHHHHHHHh--CcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHH
Q 015687 274 ---DKIQAVIEA--GVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC 347 (402)
Q Consensus 274 ---~~~~~~~~~--~~i~~L~~~L~-~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~ 347 (402)
+....+-+. .++..|+.+|. +.++.+..-||.=||.++...|.....+-+.|+=..++.++.++ +++||.+|.
T Consensus 339 FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eAL 417 (429)
T cd00256 339 FWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEAL 417 (429)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHHH
Confidence 112223333 35778899984 55778888899999999999888888777889999999999999 999999999
Q ss_pred HHHHHHhc
Q 015687 348 WTISNITA 355 (402)
Q Consensus 348 ~~L~nl~~ 355 (402)
.++.-+..
T Consensus 418 ~avQklm~ 425 (429)
T cd00256 418 LAVQKLMV 425 (429)
T ss_pred HHHHHHHH
Confidence 99987754
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-10 Score=102.57 Aligned_cols=302 Identities=15% Similarity=0.137 Sum_probs=209.3
Q ss_pred CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHH
Q 015687 84 DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 163 (402)
Q Consensus 84 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 163 (402)
...+...|+..|.+++.. ...-..+....++..|++.|..++ .++.......|..++-. .++...+.+.|++..|+
T Consensus 276 QeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~ 351 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLL 351 (791)
T ss_pred HHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHH
Confidence 344555677788888642 334456888899999999999888 78888888888888875 78899999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchH
Q 015687 164 RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPAL 243 (402)
Q Consensus 164 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l 243 (402)
+++...+++++...+..+.|++.++. .|..++..|.+|.+..++..+... ..|.-.+..++.++..........++
T Consensus 352 klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD~~K~MfayTdci 427 (791)
T KOG1222|consen 352 KLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDDDAKAMFAYTDCI 427 (791)
T ss_pred HhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCcHHHHHHHHHHHH
Confidence 99999999999999999999998876 688889999999999999544433 23455566666654433333446677
Q ss_pred HHHHHhcc-CCChhHHHHHH--------------------------------------HHHHHhccCChHHHHHHHHhCc
Q 015687 244 PALERLIH-SNDDEVLTDAC--------------------------------------WALSYLSDGTNDKIQAVIEAGV 284 (402)
Q Consensus 244 ~~L~~lL~-~~~~~v~~~a~--------------------------------------~~l~~l~~~~~~~~~~~~~~~~ 284 (402)
+.+.+.+- ..+.+|-...+ ..+.+++.+.......+++ .
T Consensus 428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~Fid--y 505 (791)
T KOG1222|consen 428 KLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFID--Y 505 (791)
T ss_pred HHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHH--H
Confidence 76665442 23333322222 2233333333222222222 2
Q ss_pred HHHHHHhcCC-CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC-chhHHHHHHHHHHHHhcCCHHHHH
Q 015687 285 CPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQ 362 (402)
Q Consensus 285 i~~L~~~L~~-~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~~~ 362 (402)
+.-|..+++. +++.....|+.+++|+.-...+..+.+-+.+++|.+-..|..+. ..++.-..+-+++.++.. ..+..
T Consensus 506 vgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~ 584 (791)
T KOG1222|consen 506 VGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCAR 584 (791)
T ss_pred HHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHH
Confidence 3344444433 34567788999999998866667777778899999999997652 345666677777766653 45555
Q ss_pred HHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHhh
Q 015687 363 AIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNAT 396 (402)
Q Consensus 363 ~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~ 396 (402)
.+..+|+++.|+++|+. .|.+.....+++...+.
T Consensus 585 Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l 620 (791)
T KOG1222|consen 585 LLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFL 620 (791)
T ss_pred HhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 56678999999999976 44555555565555443
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.4e-10 Score=109.65 Aligned_cols=294 Identities=15% Similarity=0.105 Sum_probs=210.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
|.+.++.+.|++.+...+..+++.+....... .+.. .+++..++++.+++ .+++.-+.-.+.+.+...++..
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence 45677888888988888888887666665443 2222 24677888888888 8999999999999887655532
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
+. ++..|.+=+.++++.+|..|+++|+++-.. .+.+ -.+.++.+.+ .+.++-+++.|+.++..+...
T Consensus 104 --lL---aINtl~KDl~d~Np~IRaLALRtLs~Ir~~------~i~e-~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 104 --LL---AVNTFLQDTTNSSPVVRALAVRTMMCIRVS------SVLE-YTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred --HH---HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH------HHHH-HHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence 22 477888888999999999999999998432 1111 1455666677 788999999999999999887
Q ss_pred CCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
.|. .....+.++.|..+|.+.|+.|..+|+.+|..+....++... ...+.+..++..+..-++-.+...+.+|...
T Consensus 171 ~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y 246 (746)
T PTZ00429 171 DMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ 246 (746)
T ss_pred Ccc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence 553 223356788899999999999999999999999865544332 3345577788888766776777888888654
Q ss_pred hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHH
Q 015687 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 389 (402)
Q Consensus 311 ~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 389 (402)
...++... ..++..+...|++. ++.|.-+|+.++.++... .++.+..+... +.+.|+.++ +++++++..++
T Consensus 247 ~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~r-l~~pLv~L~-ss~~eiqyvaL 318 (746)
T PTZ00429 247 RPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTVR-VNTALLTLS-RRDAETQYIVC 318 (746)
T ss_pred CCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHHH-HHHHHHHhh-CCCccHHHHHH
Confidence 33322222 24567788889998 999999999999999864 34433333322 335566553 46677887777
Q ss_pred HHHHHhhc
Q 015687 390 WAISNATS 397 (402)
Q Consensus 390 ~aL~nl~~ 397 (402)
..|.-++.
T Consensus 319 r~I~~i~~ 326 (746)
T PTZ00429 319 KNIHALLV 326 (746)
T ss_pred HHHHHHHH
Confidence 76655543
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.9e-11 Score=116.61 Aligned_cols=256 Identities=18% Similarity=0.216 Sum_probs=162.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
...+.+++.+.+.|...+..+--.+..+...+ +. ..+. +++.+.+=|.+++ +.++..|++++++++. ++..
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~~-~~~l---~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~ 112 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHED--PE-LLIL---IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA 112 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS--HH-HHHH---HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--hh-HHHH---HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence 36788888888888888888887777775432 22 1111 4677777788877 8899999999999884 3333
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
. .+++.+.+++.++++.||..|+-++..+....|.. +... .++.+..++ .++++.+...|+.++..+ ..
T Consensus 113 ~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 113 E-----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC 181 (526)
T ss_dssp H-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred h-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence 2 25778888888899999999999999988765542 2222 577788888 777888888888888888 22
Q ss_pred CCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
.+..........++.|.+++...++..+..++..+..++......... ..+++.+..++.+.++.+...|+.++..+
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 111111334555566666666777777777777777776554433211 23445555555555555555555555554
Q ss_pred hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 015687 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (402)
Q Consensus 311 ~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 356 (402)
....+ .-..+++.|..++.++ ++.++-.++.+|..++..
T Consensus 259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~ 297 (526)
T PF01602_consen 259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQS 297 (526)
T ss_dssp SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCH
T ss_pred hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcc
Confidence 43222 1113444555555544 555555555555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.2e-11 Score=111.69 Aligned_cols=316 Identities=16% Similarity=0.184 Sum_probs=209.4
Q ss_pred HHHHHhhcCCCHH-HHHHHHHHHHHHhccCCCCchhHHh-hcCcHHHHHHhhcC-CCCHHHHHHHHHHHHHhhcCCC-cc
Q 015687 74 PAMVAGVWSDDRN-IQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASGTS-EN 149 (402)
Q Consensus 74 ~~l~~~l~s~~~~-~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~i~~L~~lL~~-~~~~~~~~~a~~~L~~l~~~~~-~~ 149 (402)
+.++.....+.+. .+..++.++..+.. + -.|....- ...++..+++-... +.+..+|..|+.+|.|-..-.. .+
T Consensus 132 ~~lv~nv~~~~~~~~k~~slealGyice-~-i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF 209 (859)
T KOG1241|consen 132 VTLVSNVGEEQASMVKESSLEALGYICE-D-IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANF 209 (859)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHc-c-CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444 77778888888843 2 22221111 23355555555443 3347899999999988554211 11
Q ss_pred hHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
....-.+=++...+..-.+++.+++..|..+|..|..-.-++-..-+....+..-+..+ .++++++...+...++++|.
T Consensus 210 ~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEFWstice 288 (859)
T KOG1241|consen 210 NNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEFWSTICE 288 (859)
T ss_pred ccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHH
Confidence 11122223566677777889999999999999999754333333333333444445556 57888999999999998887
Q ss_pred CC-C------------CC--chh----hhhchHHHHHHhccCC-------ChhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 015687 230 GK-P------------QP--LFE----QTRPALPALERLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAVIEAG 283 (402)
Q Consensus 230 ~~-~------------~~--~~~----~~~~~l~~L~~lL~~~-------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 283 (402)
.. + .+ ... ....++|.|+++|... |......|-.+|.-++....+. ++. .
T Consensus 289 EEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~ 364 (859)
T KOG1241|consen 289 EEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-H 364 (859)
T ss_pred HHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-h
Confidence 53 1 11 111 1246788888888431 2335555555665555432222 222 3
Q ss_pred cHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 015687 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA 363 (402)
Q Consensus 284 ~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 363 (402)
+++.+-+.++++++.-++.|..++|.+..+.+.....-+..+++|.++.++.++ .-.++..+.|+++.++.+.++.+..
T Consensus 365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n 443 (859)
T KOG1241|consen 365 VLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAIIN 443 (859)
T ss_pred hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhccc
Confidence 556666677899999999999999999999887777777789999999999977 8889999999999999876654432
Q ss_pred HH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 364 II-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 364 l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
-. ....++.++.-|. ++|.+..++||++.+|+.+
T Consensus 444 ~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 444 QELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEA 478 (859)
T ss_pred HhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHH
Confidence 22 3445666666665 6789999999999999854
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-10 Score=110.26 Aligned_cols=288 Identities=19% Similarity=0.243 Sum_probs=213.7
Q ss_pred HHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 75 AMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 75 ~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
++.+.+.+. +...+..++..+..+...+ . ... .+.+..++++.+.+ ...+.-+--.+..+...+++..
T Consensus 8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~-~~~-----~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~-- 77 (526)
T PF01602_consen 8 ELAKILNSFKIDISKKKEALKKLIYLMMLG-Y-DIS-----FLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELL-- 77 (526)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT-----G-----STHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHH--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-C-CCc-----hHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHH--
Confidence 344444444 6777777777666665443 1 221 36788999999777 8889888888888888655522
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
+. ++..+.+=|.++++.++..|+.++++++ .++..+. .++.+.+++ .++++.+++.|+.++..+....|
T Consensus 78 ~l---~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p 146 (526)
T PF01602_consen 78 IL---IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDP 146 (526)
T ss_dssp HH---HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCH
T ss_pred HH---HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCH
Confidence 22 5777888889999999999999999997 3332222 467777787 78889999999999999998854
Q ss_pred CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 233 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
.... .. .++.+..+|.+.|+.+...|+.++..+ ..++.... -.-...+..|..++...++-.+..+++++..++.
T Consensus 147 ~~~~--~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 147 DLVE--DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp CCHH--GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred HHHH--HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 3211 12 689999999999999999999999999 33332211 1122345666777788899999999999999998
Q ss_pred CChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHH
Q 015687 313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392 (402)
Q Consensus 313 ~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 392 (402)
..+..... ..+++.+..++++. ++.|.-+++.++..+.... . .-..+++.|..++.++++.++..++.+|
T Consensus 222 ~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~-~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L 291 (526)
T PF01602_consen 222 MEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSP-E-----LLQKAINPLIKLLSSSDPNVRYIALDSL 291 (526)
T ss_dssp SSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSH-H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred CChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcch-H-----HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence 77755521 35677889999888 9999999999999887643 2 2223688999999999999999999999
Q ss_pred HHhhcC
Q 015687 393 SNATSG 398 (402)
Q Consensus 393 ~nl~~~ 398 (402)
..++..
T Consensus 292 ~~l~~~ 297 (526)
T PF01602_consen 292 SQLAQS 297 (526)
T ss_dssp HHHCCH
T ss_pred HHhhcc
Confidence 988764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-10 Score=117.30 Aligned_cols=219 Identities=19% Similarity=0.221 Sum_probs=150.5
Q ss_pred hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 015687 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191 (402)
Q Consensus 112 ~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 191 (402)
+.+.++.|+..|.+++ +.+|..|+..|+.+.. .++++.|...|++++..+|..|+.+|+.+....+
T Consensus 619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-- 684 (897)
T ss_pred cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--
Confidence 4456789999999988 9999999999998753 2578999999999999999999999988853221
Q ss_pred hHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHH-----
Q 015687 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALS----- 266 (402)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~----- 266 (402)
..+.+...| .++++.++..++.+|..+.... .+.++..|.++|+.++..++.+|.
T Consensus 685 --------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~~ 744 (897)
T PRK13800 685 --------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDDV 744 (897)
T ss_pred --------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccCc
Confidence 113344444 4456666666666555543110 122334444455555555555444
Q ss_pred -----------------------HhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHh
Q 015687 267 -----------------------YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN 323 (402)
Q Consensus 267 -----------------------~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~ 323 (402)
.+..... ..++.|..++.++++.+|..|+.+|+.+....
T Consensus 745 ~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~--------- 806 (897)
T PRK13800 745 ESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELGCPP--------- 806 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---------
Confidence 4432111 12566777777777788888888887774321
Q ss_pred CCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 324 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 324 ~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
.+.+.+...|.++ ++.||..|+++|+.+.. ++ .++.|+.+|.+++..||.+|+++|+.+
T Consensus 807 -~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~~---------a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 807 -DDVAAATAALRAS-AWQVRQGAARALAGAAA--DV---------AVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred -hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc--cc---------hHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 1224577788877 88888888888887642 22 468899999999999999999999986
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-09 Score=104.31 Aligned_cols=300 Identities=14% Similarity=0.128 Sum_probs=204.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.++.+++.+.++|.+.+......+.+++... +-..+. +++.|.+=+.+++ +.+|-.|++.|++|-. ++...
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~---pelalL---aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e 139 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQ---PEKALL---AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLE 139 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC---hHHHHH---HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHH
Confidence 4688888999999999998888888875422 222222 3788888888888 9999999999998776 32222
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
-+++.+.+.+.+.++-||..|+.++.++...+|+ .+.+.|.++.|..++ .+.++.+..+|+.+|..++...
T Consensus 140 -----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 140 -----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhC
Confidence 2466778888999999999999999999876663 455667888999988 7899999999999999998775
Q ss_pred CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 015687 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~ 311 (402)
+. ......+.+..++..+..-++..+...+.+|......++... ..++..+.+.|++.++.|...|++++-++.
T Consensus 211 ~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 211 SE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred ch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 43 244446666777777777778888888888866442222211 246788889999999999999999999887
Q ss_pred cCC-hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-------------------------
Q 015687 312 TGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII------------------------- 365 (402)
Q Consensus 312 ~~~-~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~------------------------- 365 (402)
... +.....+.. .+-+.++.++ ++ +++++-.+...+.-+....|.....-+
T Consensus 285 ~~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~La 361 (746)
T PTZ00429 285 SRCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLV 361 (746)
T ss_pred CcCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHc
Confidence 543 222222111 2224444443 33 455555555455444433332211100
Q ss_pred H-c---CCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 366 E-A---GIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 366 ~-~---~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
+ . .++..|.+...+.+.+++..++.++++|+..
T Consensus 362 ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 362 TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIK 398 (746)
T ss_pred CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence 0 0 1233444445566778888888888888753
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-10 Score=100.69 Aligned_cols=309 Identities=14% Similarity=0.069 Sum_probs=213.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
.+..+..+..+|......+.+.+.++.+.. +.........=....|...++++.+.+-...|++||-.+... ++.+..
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~ 193 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYA 193 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhhe
Confidence 567888899999988888888888887654 222211000012344555666644467788899999999986 889999
Q ss_pred HHhCCchHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 153 VIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
++...++..++..+. ..+..++-+.+.+++-|+.+++.. ..+...+.++.|..++..+..+.+.+-++.++.|++..
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999888999999883 367889999999999998887754 66688889999999998888999999999999999988
Q ss_pred CCCCch------hhhhchHHHHHHhcc---CCChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHH-hcCCCChhh
Q 015687 231 KPQPLF------EQTRPALPALERLIH---SNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVE-LLRHPSPSV 299 (402)
Q Consensus 231 ~~~~~~------~~~~~~l~~L~~lL~---~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~-~L~~~~~~v 299 (402)
.+.... ..+..-++..++.|. -+|+++..+.-..-..|-. ..+.+-.- .....+.. .|. -+|.-
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~----svq~LsSFDeY~sEl~sG~L~-WSP~H 347 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKN----SVQDLSSFDEYKSELRSGRLE-WSPVH 347 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----HHHhhccHHHHHHHHHhCCcC-CCccc
Confidence 643322 223344445555553 3577766654433333321 11111000 00011111 111 12221
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHh--CCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh
Q 015687 300 LIPALRTVGNIVTGDDMQTQCIIN--HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377 (402)
Q Consensus 300 ~~~a~~~l~nl~~~~~~~~~~i~~--~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 377 (402)
+..-.|- ++...+.+ ..++..|+.+|+.+.+|.+-.-||.=++....+.|+....+.+.|+=..+++++
T Consensus 348 k~e~FW~---------eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Ll 418 (442)
T KOG2759|consen 348 KSEKFWR---------ENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLL 418 (442)
T ss_pred cccchHH---------HhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHh
Confidence 2221111 12222222 246788999999886799999999999999999899888888999999999999
Q ss_pred ccCCHHHHHHHHHHHHHhhcC
Q 015687 378 LNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 378 ~~~~~~v~~~a~~aL~nl~~~ 398 (402)
+.+|++|+.+|+.|+..|..+
T Consensus 419 nh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 419 NHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred cCCCchHHHHHHHHHHHHHhh
Confidence 999999999999999888764
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.7e-10 Score=105.94 Aligned_cols=260 Identities=18% Similarity=0.183 Sum_probs=205.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhh-cCCCcchHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhhH
Q 015687 116 VPRFIEFLSRDDFPQLQFEAAWALTNIA-SGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRD 193 (402)
Q Consensus 116 i~~L~~lL~~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (402)
+..|++-|....++..|.+|+.-|+.+. -++.+....+--...+|.|+.+|++ .+.++.-.|++||.+++.-.|....
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 5566666666533788888888887644 3444444444344679999999987 6899999999999999998888788
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC-C
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-T 272 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~-~ 272 (402)
.+++.++||.|+..|..-...++.+.++.+|-.+++..|. ...-.|.+-..+.+|.--...++..|+.+.+|+|.. .
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~--AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK--AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH--HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8999999999999997778889999999999999998543 233357777777777666777899999999999954 3
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC---ChHHHHHHHhCCChHHHHHHhcCCC---chhHHHHH
Q 015687 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG---DDMQTQCIINHQALPCLLDLLTQNY---KKSIKKEA 346 (402)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~---~~~~~~~i~~~~~l~~L~~ll~~~~---~~~v~~~a 346 (402)
.+....+++ .+|.|..+|++.+....+.++.++..++.+ .++..+.+..+|++....+++.-.. +..+....
T Consensus 327 sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v 404 (1051)
T KOG0168|consen 327 SDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV 404 (1051)
T ss_pred CccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence 333455554 589999999999999999999999998864 4556777888999999999997551 12455677
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc
Q 015687 347 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 379 (402)
Q Consensus 347 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 379 (402)
+.+|+-++.+++-....+...++...|.++|..
T Consensus 405 Irmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 405 IRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 788888999999999999999999999999864
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.5e-09 Score=98.08 Aligned_cols=126 Identities=12% Similarity=0.143 Sum_probs=105.5
Q ss_pred hchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 015687 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 319 (402)
Q Consensus 240 ~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~ 319 (402)
..+...+++++..++..|...++.+++|+.-.-.+....++..|+++.+..++.+.++.++..++|+|.++..+.++..+
T Consensus 418 ~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k 497 (678)
T KOG1293|consen 418 NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK 497 (678)
T ss_pred chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH
Confidence 35567788888888889999999999999866555668899999999999999999999999999999999999887766
Q ss_pred HHHhCCChH-HHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015687 320 CIINHQALP-CLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366 (402)
Q Consensus 320 ~i~~~~~l~-~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 366 (402)
......+-. .+..+.+++ ++.|++.+...+.|++.++.+.+..+++
T Consensus 498 ~~~~~ki~a~~i~~l~nd~-d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 498 FQLLAKIPANLILDLINDP-DWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HHHHHHhhHHHHHHHHhCC-CHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 555555443 455566666 9999999999999999998888877765
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6e-10 Score=97.47 Aligned_cols=183 Identities=18% Similarity=0.209 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHh
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 208 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l 208 (402)
.+-+..|+.-|..++.. -++...+++.|+...++.++++++..+|+.|+|+|+..+.++|..+..+++.|++..|+..+
T Consensus 97 le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred HHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 77788899999988875 78889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHhhhCCCCCch-hhhhchHHHHHHhccC--CChhHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 015687 209 NEHAKLSMLRNATWTLSNFCRGKPQPLF-EQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC 285 (402)
Q Consensus 209 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~lL~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i 285 (402)
..+.+..++..|+++++.+.++.+.... ...-++...|...+++ .+...+..++..+.++..........+...+..
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~ 255 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ 255 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence 8777888999999999999999844333 3335668899999988 567788999999999987666555555555666
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 286 PRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 286 ~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
..+..+....+..+.+.++.++-....
T Consensus 256 ~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 256 RVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 666667777778888888887766654
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.6e-10 Score=104.18 Aligned_cols=321 Identities=19% Similarity=0.200 Sum_probs=219.6
Q ss_pred HHHHHHhhcC--CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 73 LPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 73 i~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+-.++...++ .+..+++.|+.+|.+.+...+.....+.-..=+++..++.-++++ .+++..|+.||..|..-..++.
T Consensus 174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m 252 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFM 252 (859)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554 356788999999988765543222333444446677778878888 8999999999999998767777
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh--------------h-HHH---HhcCChHHHHHHhcc-c
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC--------------R-DLV---LSNGALMPLLAQFNE-H 211 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~--------------~-~~~---~~~g~i~~L~~~l~~-~ 211 (402)
........+..-+.-+.+++++|.-+++...+++|.+.-+. . ..+ .-.+++|.|+++|.+ +
T Consensus 253 ~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 253 EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD 332 (859)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence 77777677888888888999999999999999988432110 0 000 112467778888743 2
Q ss_pred h-----hhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 015687 212 A-----KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 286 (402)
Q Consensus 212 ~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 286 (402)
+ +-.....|..+|.-+++... ...+..++|.+-.-++++|..-+..+..+++.+-.+++.....-+-.++++
T Consensus 333 e~~d~DdWnp~kAAg~CL~l~A~~~~---D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp 409 (859)
T KOG1241|consen 333 EDDDDDDWNPAKAAGVCLMLFAQCVG---DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP 409 (859)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHhc---ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence 1 12233334344433333211 123347788888888999999999999999999988776555555567899
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH-HHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHH----
Q 015687 287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ-CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI---- 361 (402)
Q Consensus 287 ~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~-~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~---- 361 (402)
.++.++.+++-.++..+.|++|.++.+.++.+. ...-.+.++.++.-|.+ .|.+-.++||++.+++.+.++..
T Consensus 410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~s~~ 487 (859)
T KOG1241|consen 410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAVSNG 487 (859)
T ss_pred HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999999988888999999999999987764322 12233567777777765 58899999999999995322211
Q ss_pred -----HHHHHcCCHHHHHHHhcc---CCHHHHHHHHHHHHHhhcCCC
Q 015687 362 -----QAIIEAGIIGPLVNLLLN---AEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 362 -----~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~nl~~~~~ 400 (402)
....+. ++..|+..-+. .+..+|..|-.||.-++..++
T Consensus 488 qt~~~t~~y~~-ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st 533 (859)
T KOG1241|consen 488 QTDPATPFYEA-IIGSLLKVTDRADGNQSNLRSAAYEALMELIKNST 533 (859)
T ss_pred CCCccchhHHH-HHHHHHhhccccccchhhHHHHHHHHHHHHHHcCc
Confidence 111111 34444444433 456799999999998887665
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-09 Score=95.62 Aligned_cols=187 Identities=23% Similarity=0.238 Sum_probs=155.8
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchH
Q 015687 81 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVP 160 (402)
Q Consensus 81 ~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 160 (402)
.+.+.+.+..|+..|..++. +-++...++..|++..++.++++++ ..+|..|+|+|+.++..+|.....+++.|+.+
T Consensus 93 ~s~~le~ke~ald~Le~lve--~iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVE--DIDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHH--hhhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 35678899999999999875 3677888999999999999999998 99999999999999999999999999999999
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccc-hhhHHHHHHHHHHHHhhhCCCCCchhh
Q 015687 161 IFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQ 238 (402)
Q Consensus 161 ~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~ 238 (402)
.|+..+.+ .+..++..|+.+++.+..+.+...+.+...++...|...+... .+..+++.++..+..+...........
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999886 5567789999999999999988899999999999999999543 688899999999999998873333333
Q ss_pred h-hchHHHHHHhccCCChhHHHHHHHHHHHhcc
Q 015687 239 T-RPALPALERLIHSNDDEVLTDACWALSYLSD 270 (402)
Q Consensus 239 ~-~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~ 270 (402)
. .++-..+..+..+.+.++...++.++..+..
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 3 3444455566666777888887777665543
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-09 Score=97.67 Aligned_cols=230 Identities=18% Similarity=0.263 Sum_probs=162.4
Q ss_pred chHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhhHHHHh------cCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 158 AVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLS------NGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 158 ~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~------~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
....++.+|+ +++.++.+..+..+..+..+.+...+.+.. .....++++++ ..+|..+...++..+..+..
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 3455555554 368999999999999999988876666655 23678889877 67799999999999999998
Q ss_pred CCCCCchhhhhchHHHHHHhcc----CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-----CC--CChh
Q 015687 230 GKPQPLFEQTRPALPALERLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-----RH--PSPS 298 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L-----~~--~~~~ 298 (402)
..+........+.++.++..+. +++.+++..++.++.++..... ....+.+.|+++.+..++ .. .+..
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 8766555533555566665554 4567788999999999985544 557788899999999999 22 2356
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHHh
Q 015687 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN-QIQAIIEAGIIGPLVNLL 377 (402)
Q Consensus 299 v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll 377 (402)
++..++.++.-++. +++....+.+.++++.|..+++.....+|.+-+..++.|++...++ ....++..|+++.+-.+.
T Consensus 214 l~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~ 292 (312)
T PF03224_consen 214 LQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS 292 (312)
T ss_dssp HHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence 78889999998877 5557777888899999999998776889999999999999985443 778888887777766665
Q ss_pred cc--CCHHHHHHHHH
Q 015687 378 LN--AEFEIKKEAAW 390 (402)
Q Consensus 378 ~~--~~~~v~~~a~~ 390 (402)
.. +|+++....-+
T Consensus 293 ~rk~~Dedl~edl~~ 307 (312)
T PF03224_consen 293 ERKWSDEDLTEDLEF 307 (312)
T ss_dssp SS--SSHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH
Confidence 44 67877765443
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-09 Score=104.77 Aligned_cols=274 Identities=17% Similarity=0.215 Sum_probs=211.0
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHH
Q 015687 83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF 162 (402)
Q Consensus 83 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 162 (402)
.....|+.|-..-....+.++.||-+ +|..++.|-+ +--+..|+..|+....-.+-....-..-|++|+.
T Consensus 448 ~FFteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYV 517 (1387)
T KOG1517|consen 448 PFFTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYV 517 (1387)
T ss_pred chHHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHH
Confidence 34567777877777777777777776 6777777665 3447788889988887667777888888999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccch--hhHHHHHHHHHHHHhhhCCCCCchhhh-
Q 015687 163 VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFEQT- 239 (402)
Q Consensus 163 ~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~- 239 (402)
++||+++-.+++...+.+...|..-++.++..+++.++-..++..|..++ +++-+..++++|+.++++.+..+....
T Consensus 518 LKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~ 597 (1387)
T KOG1517|consen 518 LKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN 597 (1387)
T ss_pred HHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcc
Confidence 99999999999999888888887777889989999888888888885423 457788899999999998755444443
Q ss_pred hchHHHHHHhccCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC----C
Q 015687 240 RPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG----D 314 (402)
Q Consensus 240 ~~~l~~L~~lL~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~----~ 314 (402)
.+++...+..|.++ .+-++.-+|-+|+.|=...+...-.-.+.++.+.|..+|.++-++||..|+++||.+..+ .
T Consensus 598 ~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~f 677 (1387)
T KOG1517|consen 598 GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNF 677 (1387)
T ss_pred ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccccccc
Confidence 66777777788775 577888899999998766554444456678899999999999999999999999999986 3
Q ss_pred hHHHHHH------------HhCCCh---HHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 015687 315 DMQTQCI------------INHQAL---PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 367 (402)
Q Consensus 315 ~~~~~~i------------~~~~~l---~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 367 (402)
++++..+ ++..+. -.++.+++.+ .+-++.+.+-+|+.+..+...+...+.-+
T Consensus 678 de~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~n 744 (1387)
T KOG1517|consen 678 DEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAGN 744 (1387)
T ss_pred chhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhhh
Confidence 4333322 222222 3677778888 99999999999999998777766555443
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-07 Score=88.59 Aligned_cols=321 Identities=18% Similarity=0.202 Sum_probs=235.8
Q ss_pred ccHHHHHHhhcCCC-HHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhcCCC-
Q 015687 71 ESLPAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTS- 147 (402)
Q Consensus 71 ~~i~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~~~~~~a~~~L~~l~~~~~- 147 (402)
+.|+.|+..+.+.. .+-+..|+..|..+.. .....+... +++.|++.|+.+ .++++...++..+.++....+
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr----kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR----KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH----HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 56899998888654 7889999999988842 233444444 589999999753 348999999999999887542
Q ss_pred -----cch----------HHH-HhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhhHHHHhc-CChHHHHHHhc
Q 015687 148 -----ENT----------RVV-IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSN-GALMPLLAQFN 209 (402)
Q Consensus 148 -----~~~----------~~~-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~-g~i~~L~~~l~ 209 (402)
+.+ +.+ ...+.|..|+.+++..|--||..++..|.++... +++.++.++.. -+|..++.+|
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL- 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL- 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence 111 223 3357899999999999999999999999998755 45666666553 5789999999
Q ss_pred cchhhHHHHHHHHHHHHhhhCCCCCchh-hhhchHHHHHHhccCC---C-hhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 015687 210 EHAKLSMLRNATWTLSNFCRGKPQPLFE-QTRPALPALERLIHSN---D-DEVLTDACWALSYLSDGTNDKIQAVIEAGV 284 (402)
Q Consensus 210 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~L~~lL~~~---~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 284 (402)
.+....++..+...|..|.++.+..+.. ...+++..|..++... | .-|..+++..+.||...+....+.+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 7777889999999999999997655543 3488999999999653 3 357889999999999887777788899999
Q ss_pred HHHHHHhcCC---CC-----hh-----hHHHHHHHHHHhhcCCh-----HHH-HHHHhCCChHHHHHHhcCC-CchhHHH
Q 015687 285 CPRLVELLRH---PS-----PS-----VLIPALRTVGNIVTGDD-----MQT-QCIINHQALPCLLDLLTQN-YKKSIKK 344 (402)
Q Consensus 285 i~~L~~~L~~---~~-----~~-----v~~~a~~~l~nl~~~~~-----~~~-~~i~~~~~l~~L~~ll~~~-~~~~v~~ 344 (402)
+|+|..+|.. .+ |. -...++.++..++.-+. .+. ..+...+++..|..++-++ -..+|+.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 9999988742 12 11 12356677777765321 222 3556779999999988776 3458999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCC----------HHHHHHHhc-cCCHHHHHHHHHHHHHhhc
Q 015687 345 EACWTISNITAGNVNQIQAIIEAGI----------IGPLVNLLL-NAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 345 ~a~~~L~nl~~~~~~~~~~l~~~~~----------i~~L~~ll~-~~~~~v~~~a~~aL~nl~~ 397 (402)
++..+++++..++......+.+..+ +-.++.+.. ...+..|.++.+++..+..
T Consensus 336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~ 399 (970)
T KOG0946|consen 336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLY 399 (970)
T ss_pred HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHh
Confidence 9999999999988777666664221 222233333 3567889999888877654
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.9e-08 Score=90.45 Aligned_cols=315 Identities=13% Similarity=0.132 Sum_probs=203.1
Q ss_pred ccHHHHHHhhcCC-------CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhh
Q 015687 71 ESLPAMVAGVWSD-------DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIA 143 (402)
Q Consensus 71 ~~i~~l~~~l~s~-------~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~ 143 (402)
+.+|.++++|..+ |...-..|..+|.-+...- .+.+.+. ++...-+-+++++ ..-+..|+-+++.+.
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~----gd~i~~p-Vl~FvEqni~~~~-w~nreaavmAfGSvm 394 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK----GDKIMRP-VLGFVEQNIRSES-WANREAAVMAFGSVM 394 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh----hhHhHHH-HHHHHHHhccCch-hhhHHHHHHHhhhhh
Confidence 4689999998752 3455555655555543211 1122211 3333344556666 577899999999999
Q ss_pred cCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc--chhhHHHHHHH
Q 015687 144 SGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HAKLSMLRNAT 221 (402)
Q Consensus 144 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~--~~~~~~~~~a~ 221 (402)
.+..+....-+-..++|.+...+.++..-+.+.++|+++.|+..-+ ..+-..|.++..+..... ...+....+++
T Consensus 395 ~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncs 471 (858)
T COG5215 395 HGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMDCPFRSINCS 471 (858)
T ss_pred cCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhccchHHhhhH
Confidence 8866555554555789999999998888999999999999986533 455566777776665422 24567788999
Q ss_pred HHHHHhhhCCCCCc---hhhhhchHHHHHHhc------cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHH-----
Q 015687 222 WTLSNFCRGKPQPL---FEQTRPALPALERLI------HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR----- 287 (402)
Q Consensus 222 ~~L~~l~~~~~~~~---~~~~~~~l~~L~~lL------~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~----- 287 (402)
|...||..+-+... ...+.++.+.++.-| ..++...+..+..+|+.+....++....+. .|+...
T Consensus 472 w~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~-a~~~~~~~~kl 550 (858)
T COG5215 472 WRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDIL-AGFYDYTSKKL 550 (858)
T ss_pred HHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHH
Confidence 99999998863322 222334444444333 224566788888888877654443322221 122222
Q ss_pred ------HHHhcCCCC----hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCC
Q 015687 288 ------LVELLRHPS----PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357 (402)
Q Consensus 288 ------L~~~L~~~~----~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~ 357 (402)
+-+.+..++ .+++.+-+..|..+.......+..+- ..++..++++|.+.....+-.....++++++..-
T Consensus 551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~-D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl 629 (858)
T COG5215 551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE-DQLMELFIRILESTKPTTAFGDVYTAISALSTSL 629 (858)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH-HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH
Confidence 222222222 35667777777777764443333222 2467788999988833356678888999998855
Q ss_pred HHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 358 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
.+........ ++|.|.+.|+..|..+...|...++.|+.
T Consensus 630 ~e~Fe~y~~~-fiPyl~~aln~~d~~v~~~avglvgdlan 668 (858)
T COG5215 630 EERFEQYASK-FIPYLTRALNCTDRFVLNSAVGLVGDLAN 668 (858)
T ss_pred HHHHHHHHhh-hhHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 5555555544 89999999998999999999999888764
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-08 Score=92.62 Aligned_cols=300 Identities=14% Similarity=0.097 Sum_probs=191.6
Q ss_pred CHHHHHHHHHHHHHHhccCCCCchhHHhhcC-cH-HHHHHhhcCCCCHHHHHHHHHHHHH-hhcCCCcchHHHHhCC---
Q 015687 84 DRNIQLDATTQFRKLLSIERSPPINEVIQSG-VV-PRFIEFLSRDDFPQLQFEAAWALTN-IASGTSENTRVVIDHG--- 157 (402)
Q Consensus 84 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g-~i-~~L~~lL~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~g--- 157 (402)
....+..++..+..++... .|-..+-.++ ++ .....-++.+.+..++..|+.+|.+ +... +..+...+
T Consensus 147 p~~~k~~sl~~~gy~ces~--~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv----~~nf~~E~erN 220 (858)
T COG5215 147 PVSGKCESLGICGYHCESE--APEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFV----QGNFCYEEERN 220 (858)
T ss_pred chHhHHHHHHHHHHHhhcc--CHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH----HHhhcchhhhc
Confidence 3567778888888886544 3322222222 22 2233344554447899999999877 3221 11111112
Q ss_pred -chHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch
Q 015687 158 -AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236 (402)
Q Consensus 158 -~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 236 (402)
++...+..-+.++.+++..+..+|..|..-.-.+-...++..........+ ++++.++...+...++.+|........
T Consensus 221 y~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~qavEfWsticeEeid~~~ 299 (858)
T COG5215 221 YFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAIQAVEFWSTICEEEIDGEM 299 (858)
T ss_pred hhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHHHHHHHHHhhhHH
Confidence 344555566779999999999999988754333333334432333333344 788889999999999888876411100
Q ss_pred -----------------hhhhchHHHHHHhccC-------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc
Q 015687 237 -----------------EQTRPALPALERLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292 (402)
Q Consensus 237 -----------------~~~~~~l~~L~~lL~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L 292 (402)
.....++|.|+++|.. +|..+...|..+|.-.+....+. +++. ++..+-.-+
T Consensus 300 e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~---i~~p-Vl~FvEqni 375 (858)
T COG5215 300 EDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK---IMRP-VLGFVEQNI 375 (858)
T ss_pred HHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH---hHHH-HHHHHHHhc
Confidence 1235689999999954 23445666666666555433322 2222 445555567
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Q 015687 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP 372 (402)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~ 372 (402)
.++++.-++.+.-++|.+..+..+....-+-...+|.+...+.++ .-.++..++|+++.|+.+-++.+.. .|-++.
T Consensus 376 ~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va~~i~p---~~Hl~~ 451 (858)
T COG5215 376 RSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVAMIISP---CGHLVL 451 (858)
T ss_pred cCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHHHhcCc---cccccH
Confidence 889999999999999999999887666666678999999999877 7889999999999998654433322 222222
Q ss_pred HHHH-hc--cCCHHHHHHHHHHHHHhhcC
Q 015687 373 LVNL-LL--NAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 373 L~~l-l~--~~~~~v~~~a~~aL~nl~~~ 398 (402)
.+.. +. .+.+.+..+++|+.-|++.+
T Consensus 452 ~vsa~liGl~D~p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 452 EVSASLIGLMDCPFRSINCSWRKENLVDH 480 (858)
T ss_pred HHHHHHhhhhccchHHhhhHHHHHhHHHh
Confidence 2222 21 25688899999999998764
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-07 Score=89.51 Aligned_cols=280 Identities=15% Similarity=0.222 Sum_probs=212.9
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCc---
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSP--- 189 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~--- 189 (402)
.|+.|++-+.+..-.+-|..|+..|..++. +++..+...| +++|++.|.. .|+++...++.++.++....+
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 488899888776556779999999998886 5777777655 8889998875 689999999999999985442
Q ss_pred ---hh----------hH-HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchh---hhhchHHHHHHhccC
Q 015687 190 ---KC----------RD-LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE---QTRPALPALERLIHS 252 (402)
Q Consensus 190 ---~~----------~~-~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~~~l~~L~~lL~~ 252 (402)
.. .+ .+...+.|..++..+ ...|-.++..+...+.++....|..... ..+.++..++.+|.+
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 11 11 233567788888888 7788999999999999999887543332 226788899999999
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC----ChhhHHHHHHHHHHhhcCChHHHHHHHhCCChH
Q 015687 253 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP----SPSVLIPALRTVGNIVTGDDMQTQCIINHQALP 328 (402)
Q Consensus 253 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~----~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~ 328 (402)
.-+.|+-+++..|+.++..++...+.+.=.+++.+|..++..+ ..-|...|+..+.|+...+......+.+.+.+|
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 9999999999999999988776544444458999999999654 246888999999999999888888888999999
Q ss_pred HHHHHhcCCC--c--------hhH--HHHHHHHHHHHhc-CCH----HHH-HHHHHcCCHHHHHHHhccC--CHHHHHHH
Q 015687 329 CLLDLLTQNY--K--------KSI--KKEACWTISNITA-GNV----NQI-QAIIEAGIIGPLVNLLLNA--EFEIKKEA 388 (402)
Q Consensus 329 ~L~~ll~~~~--~--------~~v--~~~a~~~L~nl~~-~~~----~~~-~~l~~~~~i~~L~~ll~~~--~~~v~~~a 388 (402)
.|.++|.... + ..| ...+..++..+.. +++ .+. ..+...+++..|+.++-++ ..+|+.++
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes 337 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES 337 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence 9998885431 1 111 1345555555554 322 222 3455788999999998765 46899999
Q ss_pred HHHHHHhhcCC
Q 015687 389 AWAISNATSGG 399 (402)
Q Consensus 389 ~~aL~nl~~~~ 399 (402)
..++++.+.|.
T Consensus 338 iitvAevVRgn 348 (970)
T KOG0946|consen 338 IITVAEVVRGN 348 (970)
T ss_pred HHHHHHHHHhc
Confidence 99999988764
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.8e-09 Score=93.82 Aligned_cols=222 Identities=18% Similarity=0.252 Sum_probs=154.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhh------cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCC
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQ------SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~------~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~ 147 (402)
-.+++.+ +.+++.....+..+..+++.. +...+.+.. ......|++++..+| ..++..|+.+|+.++...+
T Consensus 61 l~lL~~~-~~~~d~v~yvL~li~dll~~~-~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D-~~i~~~a~~iLt~Ll~~~~ 137 (312)
T PF03224_consen 61 LNLLNKL-SSNDDTVQYVLTLIDDLLSDD-PSRVELFLELAKQDDSDPYSPFLKLLDRND-SFIQLKAAFILTSLLSQGP 137 (312)
T ss_dssp -HHHHHH----HHHHHHHHHHHHHHHH-S-SSSHHHHHHHHH-TTH--HHHHHHH-S-SS-HHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHc-cCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHhcccccchhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHcCC
Confidence 3555555 578888999999999998865 333444443 236788888888887 8999999999999988755
Q ss_pred cchHHHHhCCchHHHHHhhCC----CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHh------ccchhhHHH
Q 015687 148 ENTRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF------NEHAKLSML 217 (402)
Q Consensus 148 ~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l------~~~~~~~~~ 217 (402)
....... .+.++.++.++.+ ++.+++..++.+|.++.... .+|..+.+.|+++.+..++ ....+.+++
T Consensus 138 ~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 138 KRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp T--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred ccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 5544433 3567777777664 55677899999999998654 4899999999999999999 456688999
Q ss_pred HHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccC-CChhHHHHHHHHHHHhccCChH-HHHHHHHhCcHHHHHHhcCC-
Q 015687 218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLRH- 294 (402)
Q Consensus 218 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~i~~L~~~L~~- 294 (402)
..++.+++.|+..++........+++|.++.+++. ..++|..-++.++.|+.....+ ....++..|+++.+-.+...
T Consensus 216 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk 295 (312)
T PF03224_consen 216 YQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERK 295 (312)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCC
Confidence 99999999999885444444446699999999965 4788999999999999976653 66778888876666555532
Q ss_pred -CChhhH
Q 015687 295 -PSPSVL 300 (402)
Q Consensus 295 -~~~~v~ 300 (402)
.|+++.
T Consensus 296 ~~Dedl~ 302 (312)
T PF03224_consen 296 WSDEDLT 302 (312)
T ss_dssp -SSHHHH
T ss_pred CCCHHHH
Confidence 344443
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5e-08 Score=92.26 Aligned_cols=318 Identities=13% Similarity=0.147 Sum_probs=204.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhcCCCcchH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
+..++.-++++.+..+...+....++++.-....+++-.+...+..++..++.++ ...+......++.+-..+ ....
T Consensus 718 v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~--r~kp 795 (1172)
T KOG0213|consen 718 VSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG--RVKP 795 (1172)
T ss_pred HHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh--cccc
Confidence 5667777788888888778777777765432223333334444555555555433 123444444444442221 0000
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh--HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR--DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~--~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
. -..++...+..|++.++.+|++|+..++.++.--..+. ..+-..|. .|...| ...+++++-..+.++..++.
T Consensus 796 y--lpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~n 870 (1172)
T KOG0213|consen 796 Y--LPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIVN 870 (1172)
T ss_pred c--hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHHH
Confidence 0 11356677888999999999999999999873221111 12222222 244555 66788999888888888876
Q ss_pred CC-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHH
Q 015687 230 GK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (402)
Q Consensus 230 ~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~ 308 (402)
.- -.....-+.+++|.|.++|++....|+++++..++.+++..++.+..--=..+.-.|+++|...+..+|..|..++|
T Consensus 871 vigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG 950 (1172)
T KOG0213|consen 871 VIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFG 950 (1172)
T ss_pred hccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 54 12223344789999999999999999999999999999876654331111245566888888888899999999999
Q ss_pred HhhcC--ChHHHHHHH----------------------h-CC---ChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH
Q 015687 309 NIVTG--DDMQTQCII----------------------N-HQ---ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 360 (402)
Q Consensus 309 nl~~~--~~~~~~~i~----------------------~-~~---~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~ 360 (402)
-|+.. ..+....++ + .| ++|.|+.=...+ +..|+.....+++.+.....+.
T Consensus 951 ~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~Feyigem 1029 (1172)
T KOG0213|consen 951 YIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIGEM 1029 (1172)
T ss_pred HHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHHHH
Confidence 88752 222222111 1 23 344444444455 6678888888888887632233
Q ss_pred HHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 361 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 361 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
-...+-. +.|.|-+.|.+.|.--|.-|+.++..++-+.
T Consensus 1030 skdYiya-v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1030 SKDYIYA-VTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred hhhHHHH-hhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 2333322 7889999999999999999999999998764
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.2e-08 Score=93.99 Aligned_cols=248 Identities=16% Similarity=0.203 Sum_probs=195.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+.+|.+++-|-|+- =++.|+..|.+++... ...+.....-|++|..+++|+++. .+++..-+.+-+.|...++.+.
T Consensus 472 eQLPiVLQVLLSQv--HRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ 547 (1387)
T KOG1517|consen 472 EQLPIVLQVLLSQV--HRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ 547 (1387)
T ss_pred HhcchHHHHHHHHH--HHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence 35677777665533 3566888888988664 667777888999999999999998 8999999999999888778888
Q ss_pred HHHHhCCchHHHHHhhCC---CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 151 RVVIDHGAVPIFVRLLSS---PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
..+++.++-.++++.|.. -+++-+..|+.+|+.++.+-+-.+..+.+.+.+...+..++.++.+-++..+|-+|..|
T Consensus 548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 888888888899998876 24688999999999999888878889999999999999996555778889999999999
Q ss_pred hhCCCCCchhh-hhchHHHHHHhccCCChhHHHHHHHHHHHhccC----ChHHHHHH------------HHhCcH---HH
Q 015687 228 CRGKPQPLFEQ-TRPALPALERLIHSNDDEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVC---PR 287 (402)
Q Consensus 228 ~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~----~~~~~~~~------------~~~~~i---~~ 287 (402)
-++.+.....- ...+...|..+|.++-++|+..|+.+|+.+... .++....+ ++.-+. ..
T Consensus 628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 98875554443 367888999999999999999999999988764 23222222 222222 25
Q ss_pred HHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHH
Q 015687 288 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII 322 (402)
Q Consensus 288 L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~ 322 (402)
++..++...+-++....-+++.++.+.......+.
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 66777888899999999999999887665544443
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-07 Score=84.50 Aligned_cols=268 Identities=13% Similarity=0.093 Sum_probs=179.9
Q ss_pred ccHHHHHHhhcCCCHH--HHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCc
Q 015687 71 ESLPAMVAGVWSDDRN--IQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~--~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 148 (402)
+.+..|++++++.+.+ ++..+...|..+++. .+.+.+...| +..++.+-+....++.+...+.+|.++..++.+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 5789999999998754 488999999999864 4566666655 445555555444478999999999999999999
Q ss_pred chHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
....++..|++..++......++.+...|+-+|+|++-+ ....+..+++..+-+-|..+. .+.|.-++.++|.+.+.|
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999854 344566677766777776666 566888899999999999
Q ss_pred hhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 015687 228 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (402)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l 307 (402)
...+.......-.+.+..+-+++.+-||.-... --..-+.+. ...-+++|+++|.+..-+.+.-+.+-+
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 988643333333444544445555555442211 011111111 113468899999865444443333333
Q ss_pred HHhhcC--ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 308 GNIVTG--DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 308 ~nl~~~--~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
..=+.. .....+.+-+-|.+..|-.+.+++ +....+.|..+|.-|..
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhcc
Confidence 222211 112234444668999999999877 65444445555554443
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-06 Score=80.43 Aligned_cols=241 Identities=17% Similarity=0.061 Sum_probs=165.5
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 72 SLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 72 ~i~~l~~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
.++.++..|. .++.+....++..+... + .+. .+..|++.|.+.+ +.++..++.+|+.+-..
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~---~-~~~--------~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~~----- 116 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ---E-DAL--------DLRSVLAVLQAGP-EGLCAGIQAALGWLGGR----- 116 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc---C-ChH--------HHHHHHHHhcCCC-HHHHHHHHHHHhcCCch-----
Confidence 4567777774 45555555444444321 1 111 2788899998887 78999999999865442
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
+..+.|+.+|.+.++.++..++.+++..-. ...+.+...+ ++.++.++..++.++..+...
T Consensus 117 ------~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 117 ------QAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR 177 (410)
T ss_pred ------HHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence 568888999999999999888887776221 1345777888 688999999999999887754
Q ss_pred CCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
..++.|...+.+.|+.|+..+++++..+.. +. .+..+..+...........+..+++..
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 456667788899999999999999977643 21 123444444444444444444444333
Q ss_pred hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 015687 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 390 (402)
Q Consensus 311 ~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 390 (402)
+.+ ..++.|..++.++ .++..++++++.+.. +. .++.|+..+.+. .++..|.+
T Consensus 237 --~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~lg~--p~---------av~~L~~~l~d~--~~aR~A~e 289 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAA---ATRREALRAVGLVGD--VE---------AAPWCLEAMREP--PWARLAGE 289 (410)
T ss_pred --Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHcCC--cc---------hHHHHHHHhcCc--HHHHHHHH
Confidence 222 4567788888765 389999999997643 33 567777777643 38889999
Q ss_pred HHHHhhc
Q 015687 391 AISNATS 397 (402)
Q Consensus 391 aL~nl~~ 397 (402)
++..|+.
T Consensus 290 A~~~ItG 296 (410)
T TIGR02270 290 AFSLITG 296 (410)
T ss_pred HHHHhhC
Confidence 9888875
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.2e-06 Score=78.79 Aligned_cols=217 Identities=17% Similarity=0.187 Sum_probs=159.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 153 (402)
+.++.+|++.-+-++..|+..+.++.-.- ++..+ ..+|.|++-|.++| +.++..|+.+++.+|..+|.+.-
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL-- 217 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL-- 217 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc--
Confidence 56777888888888888888888775432 22222 25899999999999 99999999999999998877643
Q ss_pred HhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHH--hhhC
Q 015687 154 IDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN--FCRG 230 (402)
Q Consensus 154 ~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~--l~~~ 230 (402)
..-|.|..+|. +.|.-+.-..+..+++|+---|..... .+++|.+++....-.++...+.-++.. ++.+
T Consensus 218 ---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 218 ---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred ---cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 35678888775 456666677888889888766654333 678999998443344455555544432 2322
Q ss_pred CCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
-......+.-++..|-.++.++|+.+.+-++-+++.+....+..++.. -+.++.+|.+.++.+|..|+..+--+
T Consensus 290 -~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 290 -MSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGM 363 (877)
T ss_pred -CCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHH
Confidence 123345556788888889999999999999999999998777554422 46789999999999999999999888
Q ss_pred hcC
Q 015687 311 VTG 313 (402)
Q Consensus 311 ~~~ 313 (402)
+..
T Consensus 364 Vsk 366 (877)
T KOG1059|consen 364 VSK 366 (877)
T ss_pred hhh
Confidence 753
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.9e-07 Score=83.00 Aligned_cols=272 Identities=17% Similarity=0.198 Sum_probs=186.1
Q ss_pred hhHHhhcCcHHHHHHhhcCCCC-HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHh
Q 015687 107 INEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNV 184 (402)
Q Consensus 107 ~~~~~~~g~i~~L~~lL~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl 184 (402)
.+.+...|.+..|+.++..++. ..++.+|+..|..+.. .++++.+...| +..++.+-+ ....+.....+..|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 4556677889999999998762 3569999999999887 67888888877 555555544 35678899999999999
Q ss_pred hCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-CCCchhhh-hchHHHHHHhccCCChhHHHHHH
Q 015687 185 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQT-RPALPALERLIHSNDDEVLTDAC 262 (402)
Q Consensus 185 ~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~ 262 (402)
..++++....++..|+++.++-.+ ...++.+.++++.+|.|+.-+. ...+..++ ..+-+-|..+-.+.|+-.+..+|
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 999998889999999999999888 6778999999999999998775 22233333 44555566666777888999999
Q ss_pred HHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhH
Q 015687 263 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI 342 (402)
Q Consensus 263 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v 342 (402)
-+++.++...+. -..+..+|-+..+-+++.+-++.-... --...+.+.. ...++.|+.+|++. .-+.
T Consensus 329 lAV~vlat~KE~-E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~~--------~d~LqRLvPlLdS~-R~EA 395 (832)
T KOG3678|consen 329 LAVAVLATNKEV-EREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGRG--------PDDLQRLVPLLDSN-RLEA 395 (832)
T ss_pred HHHhhhhhhhhh-hHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccCC--------hHHHHHhhhhhhcc-hhhh
Confidence 999999865542 234556676665555655544421111 1111112111 13467889999877 6666
Q ss_pred HHHHHHHHHHHhc-CCHH-HHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 343 KKEACWTISNITA-GNVN-QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 343 ~~~a~~~L~nl~~-~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
+..+++-++.=++ .+.. ....+-+-|.|..|-++..+.+.--.+-|-.+|.-|
T Consensus 396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 6555555553333 1122 223344678899999998876654444444444433
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.4e-08 Score=89.48 Aligned_cols=280 Identities=17% Similarity=0.234 Sum_probs=194.2
Q ss_pred HHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 015687 109 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188 (402)
Q Consensus 109 ~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 188 (402)
.+.+..+.+.|+++|+.++ ..+..-+...++|..-.-+..+..+.+.|+|..|+.++.+.+..++....|.+.++..++
T Consensus 426 gL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync 504 (743)
T COG5369 426 GLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC 504 (743)
T ss_pred hccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence 3557788999999999987 677888888999988776778888999999999999999999999999999999998765
Q ss_pred ch-hhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCC-C-chhhh------hchHHHHHHhccCCChhHHH
Q 015687 189 PK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-P-LFEQT------RPALPALERLIHSNDDEVLT 259 (402)
Q Consensus 189 ~~-~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~-~~~~~------~~~l~~L~~lL~~~~~~v~~ 259 (402)
.. .+-..+..-++..++.+. .++.-.++..+...|.|+..+... . ...+. .-++..+++.+...+|-...
T Consensus 505 q~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~ 583 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL 583 (743)
T ss_pred cchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence 43 233555666888999998 788889999999999999874311 1 11111 22566777888888888788
Q ss_pred HHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcC----C-------CChhhHHHHHHHHHHhhcCChHHHHHHHhCCCh
Q 015687 260 DACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLR----H-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL 327 (402)
Q Consensus 260 ~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~~L~----~-------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l 327 (402)
..|..|.+++..++...+.+.+. ..+..+.++|. . ....+..+-....-++....+.... +..
T Consensus 584 ~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r-----~~~ 658 (743)
T COG5369 584 EGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKR-----LVL 658 (743)
T ss_pred hhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccccccccccc-----cee
Confidence 88999999887766555544433 45555555541 1 1223333444444444433222111 111
Q ss_pred --HHHHHHhcCC--CchhHHHHHHHHHHHHhc---CCH------HHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 015687 328 --PCLLDLLTQN--YKKSIKKEACWTISNITA---GNV------NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394 (402)
Q Consensus 328 --~~L~~ll~~~--~~~~v~~~a~~~L~nl~~---~~~------~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n 394 (402)
|.+-..=..+ .+.++-.+..|.+.|+.- ++. +.++.+++.|+-+.|..+-..+++.||+.+-.||.+
T Consensus 659 ~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~ 738 (743)
T COG5369 659 TTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALEN 738 (743)
T ss_pred cCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHh
Confidence 2222111111 144577788898888763 233 667778888888888777777888999999999988
Q ss_pred h
Q 015687 395 A 395 (402)
Q Consensus 395 l 395 (402)
+
T Consensus 739 l 739 (743)
T COG5369 739 L 739 (743)
T ss_pred h
Confidence 6
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.7e-06 Score=78.88 Aligned_cols=300 Identities=19% Similarity=0.178 Sum_probs=196.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHH-HHHHHHHhhcCCCcchH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFE-AAWALTNIASGTSENTR 151 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~-a~~~L~~l~~~~~~~~~ 151 (402)
.+.+.+.+.+.+...+..+...+..++. ...+..+.+.+++..|...+.+.. .....+ +..+.......-.
T Consensus 136 l~~l~~ll~~~~~~~~~~aa~~~ag~v~---g~~i~~~~~~~~l~~l~~ai~dk~-~~~~re~~~~a~~~~~~~Lg---- 207 (569)
T KOG1242|consen 136 LELLLELLTSTKIAERAGAAYGLAGLVN---GLGIESLKEFGFLDNLSKAIIDKK-SALNREAALLAFEAAQGNLG---- 207 (569)
T ss_pred HHHHHHHhccccHHHHhhhhHHHHHHHc---CcHHhhhhhhhHHHHHHHHhcccc-hhhcHHHHHHHHHHHHHhcC----
Confidence 4566667777777778888888877763 456667778888999999888776 333333 3333332222111
Q ss_pred HHHhCCc---hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhh
Q 015687 152 VVIDHGA---VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 152 ~~~~~g~---i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~ 228 (402)
...+.++ +|.++.-..+....+|+.|..+...+...-+.+.-.. .++.++.-+.. ..-.....++..+..+.
T Consensus 208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~----llpsll~~l~~-~kWrtK~aslellg~m~ 282 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL----LLPSLLGSLLE-AKWRTKMASLELLGAMA 282 (569)
T ss_pred CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH----hhhhhHHHHHH-HhhhhHHHHHHHHHHHH
Confidence 1222334 4444444556788999988888877754332221111 34444444412 24456677888888777
Q ss_pred hCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 015687 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (402)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l 307 (402)
...|..-......++|.+.+.|.+..++++..+..++..++.-.+ ..++ ..+|.|++.+.++...+ ..++..|
T Consensus 283 ~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~-----~~ip~Lld~l~dp~~~~-~e~~~~L 356 (569)
T KOG1242|consen 283 DCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ-----KIIPTLLDALADPSCYT-PECLDSL 356 (569)
T ss_pred HhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH-----HHHHHHHHHhcCcccch-HHHHHhh
Confidence 775655556668999999999999999999999999988875322 1233 24688888888776333 3445555
Q ss_pred HHhhcCC--hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHhccCCHH
Q 015687 308 GNIVTGD--DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFE 383 (402)
Q Consensus 308 ~nl~~~~--~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 383 (402)
+.-..-. +...- +-++|.|.+-+... +..+++.++-++.|+|. .++..+..++.. ++|.|-..+.+..|+
T Consensus 357 ~~ttFV~~V~~psL----almvpiL~R~l~eR-st~~kr~t~~IidNm~~LveDp~~lapfl~~-Llp~lk~~~~d~~PE 430 (569)
T KOG1242|consen 357 GATTFVAEVDAPSL----ALMVPILKRGLAER-STSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-LLPGLKENLDDAVPE 430 (569)
T ss_pred cceeeeeeecchhH----HHHHHHHHHHHhhc-cchhhhhHHHHHHHHHHhhcCHHHHhhhHHH-HhhHHHHHhcCCChh
Confidence 4433211 11111 12345666666666 77899999999999998 367777777765 888888888888999
Q ss_pred HHHHHHHHHHHhhc
Q 015687 384 IKKEAAWAISNATS 397 (402)
Q Consensus 384 v~~~a~~aL~nl~~ 397 (402)
+|..|..||+.+..
T Consensus 431 vR~vaarAL~~l~e 444 (569)
T KOG1242|consen 431 VRAVAARALGALLE 444 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999977654
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.5e-06 Score=80.89 Aligned_cols=320 Identities=13% Similarity=0.128 Sum_probs=194.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHH
Q 015687 75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 154 (402)
Q Consensus 75 ~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 154 (402)
.+++.+.+.|.+.++.|+.-|.+=+... ....+.--+..++..++++|++.+ .++|..|+.|++-+++.-++.+ +.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~--le 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQ--LE 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHH--HH
Confidence 7888999999999999999888776543 333333334557899999999988 8999999999999986433222 21
Q ss_pred hCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc----cc-hhhHHHHHHHHHHHHhhh
Q 015687 155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN----EH-AKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 155 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~----~~-~~~~~~~~a~~~L~~l~~ 229 (402)
-++..|+.-+-+.....+..+.-.|.....+-+..........+.+.+...+. .. ....++-.++..+.....
T Consensus 85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 24556666544455555555544444433332222223333334444544442 22 233355556655555444
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCC-hHHHHHHHH---------------------------
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT-NDKIQAVIE--------------------------- 281 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~--------------------------- 281 (402)
....--..+-...+..++.-+.+.-..|+..++.+|+.++... .+....+++
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r 242 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICR 242 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence 3321111133455666666777777788888888888776422 111111110
Q ss_pred ----------hCcHHHHHHhc---CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC----------
Q 015687 282 ----------AGVCPRLVELL---RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY---------- 338 (402)
Q Consensus 282 ----------~~~i~~L~~~L---~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~---------- 338 (402)
..+++.+.++. ..++++.++.++.+++.+....+..+-.... .++..++..+..+.
T Consensus 243 ~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~yd~~eDe 321 (1233)
T KOG1824|consen 243 QAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNYDTEEDE 321 (1233)
T ss_pred HhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCCCCccch
Confidence 12455555555 4556788888888888888766643321111 22333333332210
Q ss_pred -----------------------chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 339 -----------------------KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 339 -----------------------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
+-.||++|+.++..+.....+....+... +-|.++.-++.-+..|+-....+...+
T Consensus 322 d~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~-l~p~lI~RfkEREEnVk~dvf~~yi~l 400 (1233)
T KOG1824|consen 322 DAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQT-LGPALISRFKEREENVKADVFHAYIAL 400 (1233)
T ss_pred hhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHH-hCHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 12589999999998888767766665554 678899999988888988888887777
Q ss_pred hcCCCCC
Q 015687 396 TSGGSSW 402 (402)
Q Consensus 396 ~~~~~~~ 402 (402)
...-..|
T Consensus 401 l~qt~~~ 407 (1233)
T KOG1824|consen 401 LKQTRPV 407 (1233)
T ss_pred HHcCCCC
Confidence 6665555
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.4e-06 Score=72.32 Aligned_cols=268 Identities=14% Similarity=0.122 Sum_probs=169.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHH--hCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhH
Q 015687 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI--DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (402)
Q Consensus 116 i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (402)
+..+++++.+.+ |.++..|+..+..++.. ..+.+. +.-.++.+.+++....+ .+.|+.+|.|++.+.. .+.
T Consensus 5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRK 77 (353)
T ss_pred HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHH
Confidence 456889999988 99999999999888875 222222 23467889999987666 7789999999997765 677
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhh-------hhchHHHHHHhccCCCh--hHHHHHHHH
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ-------TRPALPALERLIHSNDD--EVLTDACWA 264 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-------~~~~l~~L~~lL~~~~~--~v~~~a~~~ 264 (402)
.++.. .+..++..+ .++........|..|+|+++......... ..+.+.........+-. .-.......
T Consensus 78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 77776 677777777 55666778889999999998852211111 12333333333333211 234556667
Q ss_pred HHHhccCChHHHHHHHHhCc--HHHHHHhcCCCChhhH-HHHHHHHHHhhcCChHHHHHHHhC--CChHHHHHHhcCC--
Q 015687 265 LSYLSDGTNDKIQAVIEAGV--CPRLVELLRHPSPSVL-IPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLLTQN-- 337 (402)
Q Consensus 265 l~~l~~~~~~~~~~~~~~~~--i~~L~~~L~~~~~~v~-~~a~~~l~nl~~~~~~~~~~i~~~--~~l~~L~~ll~~~-- 337 (402)
++|++.....+ ..+.+... .+.+..+=. .+..+| ...+.+|.|+|.....+-. +++. .++|.++--+..+
T Consensus 156 f~nls~~~~gR-~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 156 FANLSQFEAGR-KLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEE 232 (353)
T ss_pred HHHHhhhhhhh-hHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCccc
Confidence 78888665544 44444432 223333333 444454 4578889998876553332 2221 3444444333221
Q ss_pred -----------------------CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHH
Q 015687 338 -----------------------YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAIS 393 (402)
Q Consensus 338 -----------------------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~ 393 (402)
.++.+|+...-+|.-||+. ...++.+.+.|+.|.|-.+-.. .++++++.+-..+.
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq 311 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQ 311 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 1688999999999999885 4557788888888777776554 55677665554444
Q ss_pred Hhh
Q 015687 394 NAT 396 (402)
Q Consensus 394 nl~ 396 (402)
-+.
T Consensus 312 ~Lv 314 (353)
T KOG2973|consen 312 MLV 314 (353)
T ss_pred HHH
Confidence 433
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.5e-06 Score=76.24 Aligned_cols=264 Identities=11% Similarity=0.153 Sum_probs=174.9
Q ss_pred HHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhc-CCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 75 AMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 75 ~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
.+...+++ .+.+....++.+|..++.. ++....++..+++..++..+. +.-.-++|++.+.|+.-++.. +...+.
T Consensus 160 ~l~~~l~~~~~~~~~~~~~rcLQ~ll~~--~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~ 236 (442)
T KOG2759|consen 160 FLKEQLQSSTNNDYIQFAARCLQTLLRV--DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEK 236 (442)
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHhcC--cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHH
Confidence 34445555 5667777788889888753 355666778888999999884 332368999999999999885 666677
Q ss_pred HHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch------hhHHHHhcCChHHHHHHhcc--chhhHHHHHHHHH
Q 015687 153 VIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK------CRDLVLSNGALMPLLAQFNE--HAKLSMLRNATWT 223 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~------~~~~~~~~g~i~~L~~~l~~--~~~~~~~~~a~~~ 223 (402)
+...+.|+.|..++++ ..+.|.+.++.++.|++...+. ....++ .+.+++.++.|.. ..|+++....-..
T Consensus 237 ~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv-~~~v~k~l~~L~~rkysDEDL~~di~~L 315 (442)
T KOG2759|consen 237 LKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMV-LCKVLKTLQSLEERKYSDEDLVDDIEFL 315 (442)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH-hcCchHHHHHHHhcCCCcHHHHHHHHHH
Confidence 7778999999999985 6778889999999999976641 112223 3455566666633 3466665554443
Q ss_pred HHHhhhCC-CCCchhhhhchHHHHH-HhccCCChhHHHHHHHHHHHhccCChHHHHHHHHh--CcHHHHHHhcCCC-Chh
Q 015687 224 LSNFCRGK-PQPLFEQTRPALPALE-RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLRHP-SPS 298 (402)
Q Consensus 224 L~~l~~~~-~~~~~~~~~~~l~~L~-~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~i~~L~~~L~~~-~~~ 298 (402)
-..|-... .-..+ .....-+- ..|. -+|.=...-.|- +....+-+. .++..|+.+|... ++.
T Consensus 316 ~e~L~~svq~LsSF---DeY~sEl~sG~L~-WSP~Hk~e~FW~---------eNa~rlnennyellkiL~~lLe~s~Dp~ 382 (442)
T KOG2759|consen 316 TEKLKNSVQDLSSF---DEYKSELRSGRLE-WSPVHKSEKFWR---------ENADRLNENNYELLKILIKLLETSNDPI 382 (442)
T ss_pred HHHHHHHHHhhccH---HHHHHHHHhCCcC-CCccccccchHH---------HhHHHHhhccHHHHHHHHHHHhcCCCCc
Confidence 33333221 11111 01111111 1111 111111111110 111222222 3678899999655 578
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 015687 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (402)
Q Consensus 299 v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 356 (402)
+..-|+.=||..+...|+....+.+.|+-..++++++++ +|+||.+|..++.-+..+
T Consensus 383 iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 383 ILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLMVH 439 (442)
T ss_pred eeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHHhh
Confidence 888999999999999999999899999999999999999 999999999998877543
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-06 Score=84.37 Aligned_cols=265 Identities=19% Similarity=0.201 Sum_probs=172.0
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
+...+...+++.+ +-++..|+.+..++-.. ..+.+.+.|.++.|..++.+.++.+...|+.+|..|....+..-..
T Consensus 122 ~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 122 LCDPLLKCLKDDD-PYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHHhccCCC-hhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence 3567778888888 89999999988887654 3456778899999999999999999999999999998766531111
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChH
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~ 274 (402)
.+....+..++..+ +.-....-+..+-.++...|... .....++..+...|.+.++.+...+...+.++......
T Consensus 198 ~l~~~~~~~lL~al----~ec~EW~qi~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~ 272 (734)
T KOG1061|consen 198 ELNPQLINKLLEAL----NECTEWGQIFILDCLAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ 272 (734)
T ss_pred cccHHHHHHHHHHH----HHhhhhhHHHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence 11112233333333 33334455566677777766555 44466778888888999999888888888888765554
Q ss_pred HHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHH--------------------------hCC---
Q 015687 275 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII--------------------------NHQ--- 325 (402)
Q Consensus 275 ~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~--------------------------~~~--- 325 (402)
. ...+-..+-++++.+++... .++.-+++-+.-+....+.....-+ +++
T Consensus 273 ~-~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q 350 (734)
T KOG1061|consen 273 V-NELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ 350 (734)
T ss_pred H-HHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH
Confidence 2 33333456677888887766 6777777777766655443211000 111
Q ss_pred ChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 326 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
++.-+...-..- +.+..+++++++++++..-++. +++++.|+++++..-..+..+++..+..+..
T Consensus 351 vl~El~eYatev-D~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 351 VLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred HHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 222222222233 6778899999999998742221 4566666777665555555555555555543
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.5e-07 Score=85.02 Aligned_cols=237 Identities=14% Similarity=0.132 Sum_probs=159.0
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCC---CchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC-
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGD---SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP- 232 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~---~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~- 232 (402)
-++...+.+|+++.+.+|++|+...+.|+.- ..+. ..+...|.+ |.+-+ ...++++.-..+.+++.+.....
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~-~~l~klg~i--LyE~l-ge~ypEvLgsil~Ai~~I~sv~~~ 679 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET-KELAKLGNI--LYENL-GEDYPEVLGSILKAICSIYSVHRF 679 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH-HHHHHHhHH--HHHhc-CcccHHHHHHHHHHHHHHhhhhcc
Confidence 3577888899999999999999999988632 1111 222232222 33344 45678888888888877765532
Q ss_pred CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 233 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
..-..-+.+++|.|.++|++...++..+....++.++...++.+..--=..+.-.|++.|.+.+.+++..|..++|-++.
T Consensus 680 ~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 680 RSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred cccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 11222347899999999999999999999999999998776543311112355667888888899999999999888875
Q ss_pred C--ChHHHHHHH----------------------h-CCChHHHHHHh---cCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 015687 313 G--DDMQTQCII----------------------N-HQALPCLLDLL---TQNYKKSIKKEACWTISNITAGNVNQIQAI 364 (402)
Q Consensus 313 ~--~~~~~~~i~----------------------~-~~~l~~L~~ll---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 364 (402)
. ..+....++ + .|.+..|-.++ ..+ +..|+.....+++.+.....+.-...
T Consensus 760 aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TP-e~nVQnGvLkam~fmFeyig~~s~dY 838 (975)
T COG5181 760 AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETP-EANVQNGVLKAMCFMFEYIGQASLDY 838 (975)
T ss_pred hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCc-hhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 2 222222111 1 24344444444 444 56778777777777765322222222
Q ss_pred HHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 365 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 365 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
+-. +.|.|-+.|.+.|+--|..|...+..++-++
T Consensus 839 vy~-itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 839 VYS-ITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HHH-hhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 222 6788889999999999999999999988764
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.9e-05 Score=66.57 Aligned_cols=322 Identities=14% Similarity=0.153 Sum_probs=221.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCch---hHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPI---NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~---~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
.|.+-..|..+|..++..++..+..++...+...+ ..++..|+++.++.++-.++ .++-..|...+..|+.. +..
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrialf-paa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIALF-PAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhc-HHH
Confidence 45666677788889999999999888765432222 34568999999999999888 89999999999999985 777
Q ss_pred hHHHHhCCchHHH--HHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 150 TRVVIDHGAVPIF--VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 150 ~~~~~~~g~i~~L--~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
...+.+......+ ..+--..+.-.|-..+..+..+..-+|.....+...|.+..|..-+....|.-++.++......|
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 7777777666543 33334456777888888888898888888888999999999999995567888999999999999
Q ss_pred hhCCCCCchhhhhchHHHHHHhccC--CChhHHHHHHHHHHHhccCChH---HHHHHHHh--CcHHHHHHhcCCCChhhH
Q 015687 228 CRGKPQPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTND---KIQAVIEA--GVCPRLVELLRHPSPSVL 300 (402)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~l~~l~~~~~~---~~~~~~~~--~~i~~L~~~L~~~~~~v~ 300 (402)
........+..-.++++.+..++.. ++|.-.-.++...+.+.....- .-+.+++. -.++...+.+...+++.+
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai 321 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI 321 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence 9877666666668888888888854 3444333344444333321110 00112221 134445566677889999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhCCC--hHHHHHHhcCCCchhHHHHHHHHHHHHhcC---CHHHHH---------HH-H
Q 015687 301 IPALRTVGNIVTGDDMQTQCIINHQA--LPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQ---------AI-I 365 (402)
Q Consensus 301 ~~a~~~l~nl~~~~~~~~~~i~~~~~--l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~---~~~~~~---------~l-~ 365 (402)
..|+.++|.+.+... ..+.+...|- ..+++.-.-+.....-+..+..+|.+|+.. .++++. .+ .
T Consensus 322 eaAiDalGilGSnte-GadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclif 400 (524)
T KOG4413|consen 322 EAAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIF 400 (524)
T ss_pred HHHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHH
Confidence 999999999987544 4555555432 333333222221334456778899988862 333321 11 1
Q ss_pred Hc-------CCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 366 EA-------GIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 366 ~~-------~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
++ .-+.....+++.+.++++..|..++..++.
T Consensus 401 daaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 401 DAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred HHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 11 235566777787889999999999988875
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-05 Score=68.84 Aligned_cols=272 Identities=14% Similarity=0.202 Sum_probs=176.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHh--hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~--~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+..++..+.+.+|.++..|+..+..+... +.+.+. +.-.++.+.+++...+ + -..|+.++.|++.. ...+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq~-~~l~ 76 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQK-EELR 76 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHhh-HHHH
Confidence 46788999999999999999888887542 333332 2346788899998877 4 67899999999985 7777
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhc-----CChHHHHHHhccch-h-hHHHHHHHHH
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN-----GALMPLLAQFNEHA-K-LSMLRNATWT 223 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~-----g~i~~L~~~l~~~~-~-~~~~~~a~~~ 223 (402)
..+++. .+..++..+.++...+.+..+.+|.|++.+...+....... .++..++..+.+.. + ..-..+.+.+
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 777776 77778888888777788899999999999887665554332 13333443332322 2 2345677888
Q ss_pred HHHhhhCCCCCchhhhhchHH--HHHHhccCCChhHH-HHHHHHHHHhccCChHHHHHHHHh--CcHHHHH---------
Q 015687 224 LSNFCRGKPQPLFEQTRPALP--ALERLIHSNDDEVL-TDACWALSYLSDGTNDKIQAVIEA--GVCPRLV--------- 289 (402)
Q Consensus 224 L~~l~~~~~~~~~~~~~~~l~--~L~~lL~~~~~~v~-~~a~~~l~~l~~~~~~~~~~~~~~--~~i~~L~--------- 289 (402)
++|+++....+........+| .+..+-. .+..++ ...+.+|.|+|...... ..+++. .+++.++
T Consensus 156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee~ 233 (353)
T KOG2973|consen 156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEEL 233 (353)
T ss_pred HHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCcccc
Confidence 899988764444333333222 3333333 455554 45667888877544322 222221 1222111
Q ss_pred ------------HhcC-----CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 015687 290 ------------ELLR-----HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352 (402)
Q Consensus 290 ------------~~L~-----~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n 352 (402)
++|- .+++.++..-+.+|--+|.. ...++.+.+.|+.|.+-.+=+...++++++.+-.+..-
T Consensus 234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~ 312 (353)
T KOG2973|consen 234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM 312 (353)
T ss_pred CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 2231 34678999999999888874 44677788888888877777666566666655555554
Q ss_pred HhcC
Q 015687 353 ITAG 356 (402)
Q Consensus 353 l~~~ 356 (402)
+..+
T Consensus 313 Lv~~ 316 (353)
T KOG2973|consen 313 LVRL 316 (353)
T ss_pred HHhc
Confidence 4444
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-05 Score=79.03 Aligned_cols=286 Identities=15% Similarity=0.204 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHH-----hhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchH
Q 015687 86 NIQLDATTQFRKLLSIERSPPINEV-----IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVP 160 (402)
Q Consensus 86 ~~~~~a~~~l~~l~s~~~~~~~~~~-----~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 160 (402)
+-...++.+|+++++.. |....+ .--|.++.+..++....++.++..|+.++..+.. +.++...+.+.|.+.
T Consensus 1740 ~~v~m~LtAL~Nli~~n--PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSAN--PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLT 1816 (2235)
T ss_pred HHHHHHHHHHHHHHhhC--cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHH
Confidence 34566899999998854 433222 2346788888888766558999999999976665 588889999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC---CCCchh
Q 015687 161 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK---PQPLFE 237 (402)
Q Consensus 161 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~ 237 (402)
.|+.+|.+ -+..|+.++.+|..|+.... ......+.|++..+..++....+++.+..++..+..+..++ |...+.
T Consensus 1817 ~LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~IT 1894 (2235)
T KOG1789|consen 1817 TLLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTIT 1894 (2235)
T ss_pred HHHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeee
Confidence 99999986 46789999999999987765 55777889999999999888888999999999999998776 222221
Q ss_pred hhh-----------chHHHHHHhccC--CChhH------HHHHHHHHHHhc-----------------------------
Q 015687 238 QTR-----------PALPALERLIHS--NDDEV------LTDACWALSYLS----------------------------- 269 (402)
Q Consensus 238 ~~~-----------~~l~~L~~lL~~--~~~~v------~~~a~~~l~~l~----------------------------- 269 (402)
.+. ..-+..++++.. ++|++ +...-..+..+.
T Consensus 1895 L~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~ 1974 (2235)
T KOG1789|consen 1895 LIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADK 1974 (2235)
T ss_pred hHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhcc
Confidence 111 111233444422 12221 111111111111
Q ss_pred -----------------------------------------------------------cCChHHHHHHHHhCcHHHHHH
Q 015687 270 -----------------------------------------------------------DGTNDKIQAVIEAGVCPRLVE 290 (402)
Q Consensus 270 -----------------------------------------------------------~~~~~~~~~~~~~~~i~~L~~ 290 (402)
...+...+.+-..|.+|+++.
T Consensus 1975 E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~ 2054 (2235)
T KOG1789|consen 1975 ECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCT 2054 (2235)
T ss_pred CcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHH
Confidence 011111111122366666666
Q ss_pred hcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCC
Q 015687 291 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGI 369 (402)
Q Consensus 291 ~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~ 369 (402)
.+.+.+..+-..|++.|..++.+. -..+.+.....+..+++.+... +....-|+-+|-.+.. ...+-+...++.|+
T Consensus 2055 Am~~~n~s~P~SaiRVlH~Lsen~-~C~~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gL 2131 (2235)
T KOG1789|consen 2055 AMCLQNTSAPRSAIRVLHELSENQ-FCCDAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGL 2131 (2235)
T ss_pred HHHhcCCcCcHHHHHHHHHHhhcc-HHHHHHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCc
Confidence 666666666688889998888743 3556666666666778777654 4555677888887775 45566677788999
Q ss_pred HHHHHHHhcc
Q 015687 370 IGPLVNLLLN 379 (402)
Q Consensus 370 i~~L~~ll~~ 379 (402)
+|.|+.+|+.
T Consensus 2132 vpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2132 VPYLLQLLDS 2141 (2235)
T ss_pred HHHHHHHhcc
Confidence 9999999975
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-05 Score=74.10 Aligned_cols=188 Identities=30% Similarity=0.365 Sum_probs=144.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.++.+++.+.+.++..+..+...+..+-... .++.+..++.+.+ +.++..|+.+|+.+-..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~------------av~~l~~~l~d~~-~~vr~~a~~aLg~~~~~------ 104 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGSEE------------AVPLLRELLSDED-PRVRDAAADALGELGDP------ 104 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhchHH------------HHHHHHHHhcCCC-HHHHHHHHHHHHccCCh------
Confidence 6788899999999999999999877664322 5899999999998 89999999988877652
Q ss_pred HHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchh-----------hHHHHH
Q 015687 152 VVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK-----------LSMLRN 219 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~-----------~~~~~~ 219 (402)
..++.|+.++. +++..+|..+.++|+.+-... .+.+++..+..... ..++..
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~ 168 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAA 168 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 46889999888 699999999999999884221 36677777733221 123444
Q ss_pred HHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhh
Q 015687 220 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299 (402)
Q Consensus 220 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v 299 (402)
+...+..+-. ...++.+...+.+.+..++..+..++..+.... ..+.+.+...+.+++..+
T Consensus 169 a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 169 AAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV 229 (335)
T ss_pred HHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence 4444443332 356778888998888999999999999887654 234578888899999999
Q ss_pred HHHHHHHHHHhhcC
Q 015687 300 LIPALRTVGNIVTG 313 (402)
Q Consensus 300 ~~~a~~~l~nl~~~ 313 (402)
+..++..++.+-..
T Consensus 230 r~~~~~~l~~~~~~ 243 (335)
T COG1413 230 RKAALLALGEIGDE 243 (335)
T ss_pred HHHHHHHhcccCcc
Confidence 99999999988654
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.3e-08 Score=57.69 Aligned_cols=41 Identities=46% Similarity=0.690 Sum_probs=38.5
Q ss_pred CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 357 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
++++++.+++.|++|.|+.+|.+++++++++|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 47889999999999999999999999999999999999974
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.4e-06 Score=76.62 Aligned_cols=318 Identities=11% Similarity=0.065 Sum_probs=203.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.+++++..+...|..++..|+..+.+++...+...... -..+...+.++..+++ ..++. ++..+-.+..+-.....
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~--Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVY--FNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTESA 160 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccc--hHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhccccc
Confidence 47888999999999999999999998865442222222 2235677788877766 45443 33433333221111111
Q ss_pred -HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHH-hcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 152 -VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL-SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 152 -~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
.+-=.+.||.|-.-+...++..|...+.-|..+-.-++ .+.+- -..+++-|.+.| .+++.+++..+-.+++++..
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~--~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD--LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc--HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHH
Confidence 22222566666666667788888887777766643322 23321 122566677777 67777888777777776665
Q ss_pred CC-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChh-hHHHHHHHH
Q 015687 230 GK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS-VLIPALRTV 307 (402)
Q Consensus 230 ~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~-v~~~a~~~l 307 (402)
.- ..+........++.++.-++++++.++.-|+.-+..+..-.... -...-+|++..+++++.+..+. +...+...-
T Consensus 238 eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n 316 (675)
T KOG0212|consen 238 EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMVN 316 (675)
T ss_pred HHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence 43 33333355678899999999999999988876666665433322 2244568888888988777653 444433222
Q ss_pred ---HHhhcCChHHHHHHHhC-CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHH
Q 015687 308 ---GNIVTGDDMQTQCIINH-QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 383 (402)
Q Consensus 308 ---~nl~~~~~~~~~~i~~~-~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 383 (402)
..++.. +...+. ++. .+++.+.+.+.++ ..+.|-.+..-+..+-...|.++-.. ...+++.|+.-|.+.+.+
T Consensus 317 ~~l~~l~s~-~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql~~h-~~~if~tLL~tLsd~sd~ 392 (675)
T KOG0212|consen 317 GLLLKLVSS-ERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQLLVH-NDSIFLTLLKTLSDRSDE 392 (675)
T ss_pred HHHHHHHhh-hhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchhhhh-ccHHHHHHHHhhcCchhH
Confidence 222221 111111 333 4577888899888 88888888866666665555543322 355899999999999999
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 015687 384 IKKEAAWAISNATSGGSS 401 (402)
Q Consensus 384 v~~~a~~aL~nl~~~~~~ 401 (402)
|...++..+.+++....+
T Consensus 393 vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 393 VVLLALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHHHHHHhcCccc
Confidence 999999999999987654
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.7e-05 Score=72.33 Aligned_cols=234 Identities=15% Similarity=0.138 Sum_probs=165.7
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
++..|..-+..+. +.+|.....||.-+......... .-..+.+.+++..+...-+..+.+.++.+..+... ..
T Consensus 97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~ 169 (569)
T KOG1242|consen 97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ES 169 (569)
T ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hh
Confidence 4777888888887 89999999999876653222111 12467788888888888899999999999877653 56
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh-
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN- 273 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~- 273 (402)
+.+.+++..+-..+....+..-++.+..++-..+..-......++...+|.++..+.+..++++..+..+...+...-+
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 6677888899888844333333334555555455444444455667788888888888889998888777655543222
Q ss_pred HHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHH
Q 015687 274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (402)
Q Consensus 274 ~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl 353 (402)
.... -+++.++.-+....|.....++..+|.++.+.+.+....+ ..++|.+.+.|.+. .+++|+.+..++..+
T Consensus 250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT-~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDT-KPEVRKAGIETLLKF 322 (569)
T ss_pred chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 1112 1345555555445788889999999999988887666444 48999999999999 999999999999999
Q ss_pred hc--CCHHHHHH
Q 015687 354 TA--GNVNQIQA 363 (402)
Q Consensus 354 ~~--~~~~~~~~ 363 (402)
+. .+++ ++.
T Consensus 323 ~svidN~d-I~~ 333 (569)
T KOG1242|consen 323 GSVIDNPD-IQK 333 (569)
T ss_pred HHhhccHH-HHH
Confidence 87 3444 444
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.7e-05 Score=75.06 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=53.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHH
Q 015687 75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 154 (402)
Q Consensus 75 ~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 154 (402)
.+.+.|++.+..++-.|+.++.++.+.+ -+. .+.|...++|++.+ +-++..|+.|...+....|+..+.
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~s~E---mar-----dlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~-- 179 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNICSPE---MAR-----DLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEH-- 179 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccCCHH---HhH-----HhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHH--
Confidence 3344555566666666666666665422 111 13556666666666 677777777776666655554433
Q ss_pred hCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q 015687 155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 189 (402)
Q Consensus 155 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~ 189 (402)
.++....+|.+.+..|.-.++..+..+|..++
T Consensus 180 ---f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 180 ---FVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred ---hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 23344445544444444444444445554443
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8e-06 Score=77.85 Aligned_cols=261 Identities=16% Similarity=0.185 Sum_probs=166.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCC-CCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCC--Ccch
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIER-SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT--SENT 150 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~--~~~~ 150 (402)
..++..|++..+.++..|+..+..++-.-+ ...-+.+-..|++ |.+.|.... +++.-..+.++..|...- ....
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeey-pEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEY-PEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCccc-HHHHHHHHHHHHHHHHhccccccC
Confidence 344567788889999999888777643211 1122334455543 778887766 888766666666555421 1111
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
..+ .|++|.|..+|++....+++.++..++.||..++++...---..+--.|+.+| ...+.++++++..++..++..
T Consensus 879 pPi--~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelL-kahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 879 PPI--KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELL-KAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred CCh--hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHh
Confidence 111 37899999999999999999999999999988776422110011233466777 666788999999999999876
Q ss_pred CCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
-. -..++..|+.-|+..+...+....-+++-.+...... .++|.|+.-...++..|+.-.+++++.+
T Consensus 956 IG------PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF-------tVLPalmneYrtPe~nVQnGVLkalsf~ 1022 (1172)
T KOG0213|consen 956 IG------PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF-------TVLPALMNEYRTPEANVQNGVLKALSFM 1022 (1172)
T ss_pred cC------HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch-------hhhHHHHhhccCchhHHHHhHHHHHHHH
Confidence 31 1345556666665554444433333343333222211 2456666666677888888888888777
Q ss_pred hcCChHH-HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 015687 311 VTGDDMQ-TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (402)
Q Consensus 311 ~~~~~~~-~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 356 (402)
-....+. .+++ .-+.|.|-..|.+. ++.-|..|+.++.+++-+
T Consensus 1023 FeyigemskdYi--yav~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1023 FEYIGEMSKDYI--YAVTPLLEDALMDR-DLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HHHHHHHhhhHH--HHhhHHHHHhhccc-cHHHHHHHHHHHHHHhcC
Confidence 6432211 1212 24677888888877 888888999888888764
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.8e-06 Score=77.70 Aligned_cols=264 Identities=16% Similarity=0.148 Sum_probs=167.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccC-CCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIE-RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
+..++..|++..+.++..|+.....+...- .....+.+...|. .|.+.|.... +++.-..+.++..|.+...--..
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~y-pEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDY-PEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCccc-HHHHHHHHHHHHHHhhhhccccc
Confidence 456677888999999999987766553211 0122333444443 3666776666 88887777777777653111101
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.---.|++|.|..+|.+....+....+..++.+|..+|++...---..+--.|+..| .+.+.+++++|..++..+++.-
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~L-ks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSL-KSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHhhHHHHHhhhhhhhhHHhhc
Confidence 111248999999999999999999999999999988876421110001233466677 6778899999999999998763
Q ss_pred CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 015687 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~ 311 (402)
. -..++..|+.-|+..+...+....-+++-.+...... .++|.|..=...++..++.-.+++++.+-
T Consensus 762 G------PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf-------sVlP~lm~dY~TPe~nVQnGvLkam~fmF 828 (975)
T COG5181 762 G------PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF-------SVLPTLMSDYETPEANVQNGVLKAMCFMF 828 (975)
T ss_pred C------HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch-------hhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence 1 1455666766666555544444444444333222111 24566666566777788888888877665
Q ss_pred cCChH-HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 015687 312 TGDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (402)
Q Consensus 312 ~~~~~-~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 356 (402)
..... ..+++ .-+.|.|-..|.+. ++.-|..|..++..|+.+
T Consensus 829 eyig~~s~dYv--y~itPlleDAltDr-D~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 829 EYIGQASLDYV--YSITPLLEDALTDR-DPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred HHHHHHHHHHH--HHhhHHHHhhhccc-chHHHHHHHHHHHHHhcC
Confidence 43221 11222 24567777788777 888888888888888764
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.2e-05 Score=75.58 Aligned_cols=276 Identities=16% Similarity=0.193 Sum_probs=194.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
.|.+.+.++..++.++..|+.++.++.... |..-+ .+++...++|.+.+ .-+...++..+..++..+++....
T Consensus 144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~--P~l~e----~f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l~~ 216 (866)
T KOG1062|consen 144 APEVERLLQHRDPYIRKKAALCAVRFIRKV--PDLVE----HFVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDALSY 216 (866)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--chHHH----HhhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHHHH
Confidence 577788899999999999999999987643 33322 25778888888887 788888899999999887777766
Q ss_pred HHhCCchHHHHHhhCC---------------CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccc---h--
Q 015687 153 VIDHGAVPIFVRLLSS---------------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH---A-- 212 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~---------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~---~-- 212 (402)
+.+ .++-|+..|+. ++|-++...++.|+-+-.+++...+.+-+ .|-+...+. .
T Consensus 217 fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~ 289 (866)
T KOG1062|consen 217 FRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNA 289 (866)
T ss_pred HHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccc
Confidence 665 56666665532 56888999999999888777765444432 233333111 1
Q ss_pred hhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc
Q 015687 213 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292 (402)
Q Consensus 213 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L 292 (402)
-..+...+..++..+-.. . ....-++.+|-++|.+.|..+++-++..|......++...+.-. ..++++|
T Consensus 290 GnAILYE~V~TI~~I~~~---~--~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr-----~tIleCL 359 (866)
T KOG1062|consen 290 GNAILYECVRTIMDIRSN---S--GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR-----STILECL 359 (866)
T ss_pred hhHHHHHHHHHHHhccCC---c--hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH-----HHHHHHh
Confidence 234555555555544332 1 22235677889999999999999999999999877775544222 4688999
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHH-------
Q 015687 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAI------- 364 (402)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l------- 364 (402)
++++..++..|+..+-.++-.+. ... ++..|+.+|.+. +++.|...+.-+..++. ..|+....+
T Consensus 360 ~DpD~SIkrralELs~~lvn~~N--v~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl 431 (866)
T KOG1062|consen 360 KDPDVSIKRRALELSYALVNESN--VRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVL 431 (866)
T ss_pred cCCcHHHHHHHHHHHHHHhcccc--HHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 99999999999999988885443 332 345688999888 99999999999998886 344433221
Q ss_pred ------HHcCCHHHHHHHhccC
Q 015687 365 ------IEAGIIGPLVNLLLNA 380 (402)
Q Consensus 365 ------~~~~~i~~L~~ll~~~ 380 (402)
+..+++..++.++.++
T Consensus 432 ~~aG~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 432 KTAGDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred HhcccccchhhHHHHHHHHhcC
Confidence 1233566777777655
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.54 E-value=2e-07 Score=56.17 Aligned_cols=41 Identities=27% Similarity=0.569 Sum_probs=37.7
Q ss_pred ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 314 ~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
++++++.+++.|++|.|+++|.++ ++.++++|+|+|+||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 356888999999999999999988 99999999999999974
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-06 Score=81.89 Aligned_cols=291 Identities=19% Similarity=0.212 Sum_probs=151.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
...+.+.++++++..+..++....++- ..+.+...+.|+++.|.+++.+++ +.+...|+.+|..|...++.....
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~----~~~~~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLF----DIDPDLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhh----cCChhhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhCCCCCcc
Confidence 467788888999999999999998884 455677889999999999999877 899999999999999865542222
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
.+....+..++..+..-+.- .-+..|.+++.+.|.-.... ..++..+...+ ++.+..+.-.+.-.+.++....+
T Consensus 198 ~l~~~~~~~lL~al~ec~EW---~qi~IL~~l~~y~p~d~~ea--~~i~~r~~p~L-qh~n~avvlsavKv~l~~~~~~~ 271 (734)
T KOG1061|consen 198 ELNPQLINKLLEALNECTEW---GQIFILDCLAEYVPKDSREA--EDICERLTPRL-QHANSAVVLSAVKVILQLVKYLK 271 (734)
T ss_pred cccHHHHHHHHHHHHHhhhh---hHHHHHHHHHhcCCCCchhH--HHHHHHhhhhh-ccCCcceEeehHHHHHHHHHHHH
Confidence 22222333333333322222 22333444443332110000 01222233333 33333333333333333322211
Q ss_pred CCchhhhhchHHHHHHhccCCChhHHHH------------------------------------HHHHHHHhccCChHHH
Q 015687 233 QPLFEQTRPALPALERLIHSNDDEVLTD------------------------------------ACWALSYLSDGTNDKI 276 (402)
Q Consensus 233 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~------------------------------------a~~~l~~l~~~~~~~~ 276 (402)
..........-|.++.++.+.. ++..- =+.++..++... .+
T Consensus 272 ~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~--nl 348 (734)
T KOG1061|consen 272 QVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDA--NL 348 (734)
T ss_pred HHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHh--HH
Confidence 1111111222233333332222 22222 223333332111 11
Q ss_pred HHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 015687 277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (402)
Q Consensus 277 ~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 356 (402)
+ .++..+..+-..-+......+++++|+++..-++. .+.++.|+.++... ...+..+++-++..+...
T Consensus 349 ~-----qvl~El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~-~~yvvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 349 A-----QVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETK-VDYVVQEAIVVIRDILRK 416 (734)
T ss_pred H-----HHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhc-ccceeeehhHHHHhhhhc
Confidence 1 12334444445557788899999999998754422 46777777777766 555666666666666654
Q ss_pred CHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHH
Q 015687 357 NVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISN 394 (402)
Q Consensus 357 ~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~n 394 (402)
.|..... +++.+...+.+ ++++.|..-.|.++.
T Consensus 417 yP~~~~~-----vv~~l~~~~~sl~epeak~amiWilg~ 450 (734)
T KOG1061|consen 417 YPNKYES-----VVAILCENLDSLQEPEAKAALIWILGE 450 (734)
T ss_pred CCCchhh-----hhhhhcccccccCChHHHHHHHHHHhh
Confidence 3333222 22333333333 455555555555543
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.9e-05 Score=72.43 Aligned_cols=256 Identities=15% Similarity=0.150 Sum_probs=172.7
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
+-+-++.+|+++. +-++..|+.++..+....|+... ..+|.|..-|.++|+.|+..|+.+++.||.-+|..--
T Consensus 145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL- 217 (877)
T KOG1059|consen 145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL- 217 (877)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-
Confidence 3456677788777 78888888888887765454332 3688899999999999999999999999988775311
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCC-hhHHHHHHHHHH--HhccC
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND-DEVLTDACWALS--YLSDG 271 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~--~l~~~ 271 (402)
..-|.+..++-.+.+.=+.-.....+.+|+--.| .....++|.|..++++.. ..+...++.++. +++.+
T Consensus 218 ----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 218 ----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred ----cccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 1345566666455555455556666666664433 233577888888887654 445666665553 34444
Q ss_pred ChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 015687 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (402)
Q Consensus 272 ~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 351 (402)
.++... .+ .-+++.|-.++.+.++.++.-++.+++.+....+...+.. -+.+++.|.+. ++.+|-.|.-.|-
T Consensus 290 ~~d~~a-si-qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~Dk-D~SIRlrALdLl~ 361 (877)
T KOG1059|consen 290 MSDHSA-SI-QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDK-DESIRLRALDLLY 361 (877)
T ss_pred CCCcHH-HH-HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccC-CchhHHHHHHHHH
Confidence 222111 11 1247888888999999999999999999998777555533 35788999998 9999999999888
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHhc-cCCHHHHHHHHHHHHHhhcCCC
Q 015687 352 NITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 352 nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
-+.. .+++..++ ..|+.-+. .+....|.+-+.-+..+++..+
T Consensus 362 gmVs--kkNl~eIV-----k~LM~~~~~ae~t~yrdell~~II~iCS~sn 404 (877)
T KOG1059|consen 362 GMVS--KKNLMEIV-----KTLMKHVEKAEGTNYRDELLTRIISICSQSN 404 (877)
T ss_pred HHhh--hhhHHHHH-----HHHHHHHHhccchhHHHHHHHHHHHHhhhhh
Confidence 7765 34444443 33444433 3344777777777776666543
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-05 Score=73.34 Aligned_cols=313 Identities=17% Similarity=0.177 Sum_probs=193.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
+.+...+-+++.+++-.+.+.+|.++.. ....+.+.+.++--.++.-|..+ .+..-+.+|+..+..+..... ..+
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~- 103 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK- 103 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc-
Confidence 4444445556688998999999999874 46677788877655666666543 235678899999988877522 222
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
.+..|++..++.+.+++++..+..|+.+|+.++-.+| +.+...|++..+++.+.. +..++...++.++..+...+.
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcc
Confidence 2345889999999999999999999999999998887 478899999999999955 444488889999999988754
Q ss_pred CCchhhh----hchHHHHHHhc---cCCCh--hHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCCCChhhHHH
Q 015687 233 QPLFEQT----RPALPALERLI---HSNDD--EVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRHPSPSVLIP 302 (402)
Q Consensus 233 ~~~~~~~----~~~l~~L~~lL---~~~~~--~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~~L~~~~~~v~~~ 302 (402)
.+..... ..++..+...- ..++. +....+..++..+...=+.......+. ..+..|+..|..+++.++..
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 3332222 22222222220 11222 345555556655543222221111111 46788999999999999999
Q ss_pred HHHHHHHhhcCChH-HHHHH------HhCCChHHHHHHh---cCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHH
Q 015687 303 ALRTVGNIVTGDDM-QTQCI------INHQALPCLLDLL---TQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIG 371 (402)
Q Consensus 303 a~~~l~nl~~~~~~-~~~~i------~~~~~l~~L~~ll---~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~ 371 (402)
.+..+-.+..-... ..... ...|-...-.++- ... ....... ..-=.|+..+ ..--...++++|+++
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~-~~~~~~~-~~~~~~l~~~y~aLll~ili~~gL~~ 337 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEA-KSILPHR-SSKRPNLVNHYLALLLAILIEAGLLE 337 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhccccccc-ccccCcc-ccccccHHHHHHHHHHHHHHHcChHH
Confidence 99888888753321 11111 1111110000110 000 0000000 0001122221 111234556899999
Q ss_pred HHHHHhccC-CHHHHHHHHHHHHHhh
Q 015687 372 PLVNLLLNA-EFEIKKEAAWAISNAT 396 (402)
Q Consensus 372 ~L~~ll~~~-~~~v~~~a~~aL~nl~ 396 (402)
.|+++..+. +..+...|...|+.+.
T Consensus 338 ~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 338 ALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 999999886 8889999998888764
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.5e-07 Score=59.34 Aligned_cols=55 Identities=22% Similarity=0.557 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 340 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 340 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
+.+|..|+|+|++++...++........ +++.|+.+|.+++++||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~-~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPE-LLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHH-HHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999988888887775554 999999999999999999999999976
|
... |
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-05 Score=67.86 Aligned_cols=236 Identities=16% Similarity=0.140 Sum_probs=155.5
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHH-hcCChHHHHHHhccc-hhhHHHHHHHHHHHHhhhCCC-CCchh
Q 015687 161 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL-SNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKP-QPLFE 237 (402)
Q Consensus 161 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~l~~~~~-~~~~~ 237 (402)
.|-.+++.-++-.+-.|+.++.++....+ .|+... +...-..++.++..+ .+.+++.+...+++.++..+. .....
T Consensus 153 yLgkl~Q~i~~lTrlfav~cl~~l~~~~e-~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~ 231 (432)
T COG5231 153 YLGKLSQLIDFLTRLFAVSCLSNLEFDVE-KRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDID 231 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHH
Confidence 33344444456678889999999987765 455544 333556677777443 468889999999998887642 12223
Q ss_pred hhhchHHHHHHhccCC-ChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhcCC---CChhhHHHHHHHHHHhhc
Q 015687 238 QTRPALPALERLIHSN-DDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLRH---PSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 238 ~~~~~l~~L~~lL~~~-~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~~L~~---~~~~v~~~a~~~l~nl~~ 312 (402)
.....+.-++.+.+.. ...|..-+|.++.|+++. +.+.+..+.-.|-+.+.++.|.. .+++++...-++=..+..
T Consensus 232 K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~ 311 (432)
T COG5231 232 KMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQ 311 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Confidence 3345555666666543 577888999999999974 33445544444544555555532 233333222222222211
Q ss_pred C---------------------Ch---------HHHHHHHh--CCChHHHHHHhcCCCchh-HHHHHHHHHHHHhcCCHH
Q 015687 313 G---------------------DD---------MQTQCIIN--HQALPCLLDLLTQNYKKS-IKKEACWTISNITAGNVN 359 (402)
Q Consensus 313 ~---------------------~~---------~~~~~i~~--~~~l~~L~~ll~~~~~~~-v~~~a~~~L~nl~~~~~~ 359 (402)
. ++ .+.+.+.+ ..++..|.+++++. .+. .-.-||.-+..+....|+
T Consensus 312 ~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n-~~nt~i~vAc~Di~~~Vr~~PE 390 (432)
T COG5231 312 NTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSN-NPNTWICVACSDIFQLVRASPE 390 (432)
T ss_pred hhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcC-CCCceEeeeHhhHHHHHHhCch
Confidence 1 11 12333333 25688899999888 554 566788888888888899
Q ss_pred HHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 360 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
.+..+...|+-..++++++++|++|+-+|+.|+..+.+.
T Consensus 391 ~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 391 INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 888888999999999999999999999999999888753
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.6e-05 Score=71.51 Aligned_cols=259 Identities=15% Similarity=0.125 Sum_probs=173.4
Q ss_pred CchhHHhhcCcHHHHHHhh---------cCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCC-----C
Q 015687 105 PPINEVIQSGVVPRFIEFL---------SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP-----T 170 (402)
Q Consensus 105 ~~~~~~~~~g~i~~L~~lL---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-----~ 170 (402)
...+.+.....+..|.++- ....++.+..+|+.||+|+...++..++.+++.|..+.++..|+.. +
T Consensus 13 ~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~ 92 (446)
T PF10165_consen 13 TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQP 92 (446)
T ss_pred ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCC
Confidence 3445555555566666665 2333489999999999999999999999999999999999999875 7
Q ss_pred HHHHHHHHHHHHHhhCCCchhhHHHHhc-CChHHHHHHhcc---------c-------hhhHHHHHHHHHHHHhhhCCCC
Q 015687 171 DDVREQAVWALGNVAGDSPKCRDLVLSN-GALMPLLAQFNE---------H-------AKLSMLRNATWTLSNFCRGKPQ 233 (402)
Q Consensus 171 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~-g~i~~L~~~l~~---------~-------~~~~~~~~a~~~L~~l~~~~~~ 233 (402)
.++.-...+.|--++...+..+..+++. +++..++..+.. . .+......++.++.|+..+.+.
T Consensus 93 ~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~ 172 (446)
T PF10165_consen 93 SDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPK 172 (446)
T ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCc
Confidence 7888888888887777777777666554 677777766521 0 2455677788888899877644
Q ss_pred Cch----hhhhchHHHHHHhc---cC--CChhHHHHHHHHHHHhccCChHH-----------HHHHHHhCcHHHHHHhcC
Q 015687 234 PLF----EQTRPALPALERLI---HS--NDDEVLTDACWALSYLSDGTNDK-----------IQAVIEAGVCPRLVELLR 293 (402)
Q Consensus 234 ~~~----~~~~~~l~~L~~lL---~~--~~~~v~~~a~~~l~~l~~~~~~~-----------~~~~~~~~~i~~L~~~L~ 293 (402)
... .....++..+..++ .. +.......++.+|.++--..... ........++..|+.+|.
T Consensus 173 ~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld 252 (446)
T PF10165_consen 173 SVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLD 252 (446)
T ss_pred ccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHH
Confidence 332 22344555555552 11 12456777777777773211111 000112235666777763
Q ss_pred C-----C---ChhhHHHHHHHHHHhhcCChHHHHHHHh----------------CCChHHHHHHhcCCCchhHHHHHHHH
Q 015687 294 H-----P---SPSVLIPALRTVGNIVTGDDMQTQCIIN----------------HQALPCLLDLLTQNYKKSIKKEACWT 349 (402)
Q Consensus 294 ~-----~---~~~v~~~a~~~l~nl~~~~~~~~~~i~~----------------~~~l~~L~~ll~~~~~~~v~~~a~~~ 349 (402)
. . -.....+.+.+|.+++......++.+.. ..+-..|++++.+. .+.+|..+.-.
T Consensus 253 ~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vael 331 (446)
T PF10165_consen 253 KRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAEL 331 (446)
T ss_pred HHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHHH
Confidence 1 1 2357788999999999877655544432 24566899999999 69999999999
Q ss_pred HHHHhcCCHHHHHHH
Q 015687 350 ISNITAGNVNQIQAI 364 (402)
Q Consensus 350 L~nl~~~~~~~~~~l 364 (402)
|..||..+....-..
T Consensus 332 lf~Lc~~d~~~~v~~ 346 (446)
T PF10165_consen 332 LFVLCKEDASRFVKY 346 (446)
T ss_pred HHHHHhhhHHHHHHH
Confidence 999987655544333
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.6e-05 Score=70.70 Aligned_cols=188 Identities=26% Similarity=0.368 Sum_probs=143.9
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhH
Q 015687 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (402)
Q Consensus 114 g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (402)
..++.+.+++.+.+ ..++..|++.++.+... -+++.+..++.+.++.+|..++.+|+.+- .+.
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~--- 105 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG--DPE--- 105 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC--Chh---
Confidence 35888999999987 89999999997776652 47999999999999999999999998872 221
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCCh------------hHHHHH
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD------------EVLTDA 261 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~------------~v~~~a 261 (402)
.++.++..+..+.+..++..+.++|..+-.. ..+..++..+.+... .++..+
T Consensus 106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 106 ------AVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 5788999995578999999999999887754 335566666665442 244444
Q ss_pred HHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchh
Q 015687 262 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS 341 (402)
Q Consensus 262 ~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~ 341 (402)
...++.+-. ...++.+...+.+....++..+..+++.+.... ..+.+.+...+.+. +..
T Consensus 170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~ 228 (335)
T COG1413 170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE 228 (335)
T ss_pred HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence 444444332 234678888898888899999999999998765 24556788888887 888
Q ss_pred HHHHHHHHHHHHhc
Q 015687 342 IKKEACWTISNITA 355 (402)
Q Consensus 342 v~~~a~~~L~nl~~ 355 (402)
++..++..|+.+-.
T Consensus 229 vr~~~~~~l~~~~~ 242 (335)
T COG1413 229 VRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHHhcccCc
Confidence 99888888887754
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.5e-05 Score=74.19 Aligned_cols=247 Identities=14% Similarity=0.145 Sum_probs=164.9
Q ss_pred CHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHH
Q 015687 128 FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 207 (402)
Q Consensus 128 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~ 207 (402)
+..++..|+-.|+.+..+-+..- ..+.-..++.-+++++.+++..|..|||+++.++-.. .+|.++..
T Consensus 832 ~~~ikvfa~LslGElgr~~~~s~----~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~--------yLpfil~q 899 (1233)
T KOG1824|consen 832 SDSIKVFALLSLGELGRRKDLSP----QNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPK--------YLPFILEQ 899 (1233)
T ss_pred chhHHHHHHhhhhhhccCCCCCc----chhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHh--------HHHHHHHH
Confidence 35778888888888776533221 2245567888899999999999999999998754321 46666666
Q ss_pred hccchhhHHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 015687 208 FNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 286 (402)
Q Consensus 208 l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 286 (402)
+...+. =+.-....|....... ..........+...|.+-..+..+..+.-...+|+.++..+++. .+|
T Consensus 900 i~sqpk--~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes--------Llp 969 (1233)
T KOG1824|consen 900 IESQPK--RQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES--------LLP 969 (1233)
T ss_pred HhcchH--hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH--------HHH
Confidence 633221 1222222233322221 12112223344444444455556667888888999998776654 479
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015687 287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366 (402)
Q Consensus 287 ~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 366 (402)
+|-..+.++.+..+..++.++.-.....+.-.+.++. +.+..++.+++++ +.+||+.|..++...+.+.|..+..+..
T Consensus 970 kL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dp-Dl~VrrvaLvv~nSaahNKpslIrDllp 1047 (1233)
T KOG1824|consen 970 KLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDP-DLEVRRVALVVLNSAAHNKPSLIRDLLP 1047 (1233)
T ss_pred HHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCC-chhHHHHHHHHHHHHHccCHhHHHHHHH
Confidence 9999999999999999988887777666554444443 5677888999999 9999999999999998888887776654
Q ss_pred cCCHHHHHHHh----------c--------cCCHHHHHHHHHHHHHhhcCC
Q 015687 367 AGIIGPLVNLL----------L--------NAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 367 ~~~i~~L~~ll----------~--------~~~~~v~~~a~~aL~nl~~~~ 399 (402)
. ++|.|+.-- + ++.-++|+.|..++..+...+
T Consensus 1048 e-LLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdsc 1097 (1233)
T KOG1824|consen 1048 E-LLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSC 1097 (1233)
T ss_pred H-HHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhh
Confidence 3 455444321 1 133578898888888776554
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.4e-05 Score=75.29 Aligned_cols=219 Identities=16% Similarity=0.155 Sum_probs=151.0
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHH---HHHHHhhhCC---
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT---WTLSNFCRGK--- 231 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~---~~L~~l~~~~--- 231 (402)
+..-|..+..+.+..++.+|+.+|..|... -...+. .....++++ .+.+..++..|. |.+.|.+-.+
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEG-FKLSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhccc-ccccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 344477788888888888888888888652 222222 345667777 677788888774 5555555221
Q ss_pred CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcH--------------------------
Q 015687 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC-------------------------- 285 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i-------------------------- 285 (402)
..........++..+.+.+.+-+..|+..|..+|+.+..-+++.+++.++..++
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCc
Confidence 122223345677778888888888888888888887776555555554444333
Q ss_pred ------------------------HHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchh
Q 015687 286 ------------------------PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS 341 (402)
Q Consensus 286 ------------------------~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~ 341 (402)
..++.-|.++-.+||.+|...++.++...+.... ..+..|+.++++. ...
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE-~~~ 425 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDE-IEV 425 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccH-HHH
Confidence 3333334444456999999999999998875544 4567899999988 889
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 342 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 342 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
||..|.++|..|+.+ ..++...++.++..|.+.++++|.++-..|++.
T Consensus 426 VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 426 VRLKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999999999864 122333567777788888888888887777664
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00013 Score=63.47 Aligned_cols=318 Identities=15% Similarity=0.147 Sum_probs=205.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHH--HHhhcCCCCHHHHHHHHHHHHHhhcCCCc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF--IEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L--~~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 148 (402)
+-++.++..+..+|.++...|...+..+.-. +.....+.++.....+ .++-...+ +-.+......+..|.+-+++
T Consensus 128 eilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPE 204 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHH
Confidence 4578888889899999999999999888532 3445556666555443 23333333 46788888889999998899
Q ss_pred chHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccc-hhhHHHHHHHHHHHH
Q 015687 149 NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSN 226 (402)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~ 226 (402)
.....-+.|.+..|..=|.. .+.-++..++.....++.-.. .|+.+.+.|.++.+.+++... .++--.-.++..+..
T Consensus 205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdlicnIIsGadsdPfekfralmgfgk 283 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGK 283 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Confidence 99999999999999887775 677788888888888875544 577888899999999998432 222222223333333
Q ss_pred hhhCC---C-CC--chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCc--HHHHHHhcCC-CCh
Q 015687 227 FCRGK---P-QP--LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV--CPRLVELLRH-PSP 297 (402)
Q Consensus 227 l~~~~---~-~~--~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~--i~~L~~~L~~-~~~ 297 (402)
+.... . .+ .......+++-..+++..+|++.+..+..+++.+...... .+.+...|- ...++.-..+ +..
T Consensus 284 ffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteG-adlllkTgppaaehllarafdqnah 362 (524)
T KOG4413|consen 284 FFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQNAH 362 (524)
T ss_pred HhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhccccc
Confidence 33221 0 11 1111123444556677889999999999999998765543 355665553 3333333333 333
Q ss_pred hhHHHHHHHHHHhhcCC---hHH----------HHHHHh-------CCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCC
Q 015687 298 SVLIPALRTVGNIVTGD---DMQ----------TQCIIN-------HQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357 (402)
Q Consensus 298 ~v~~~a~~~l~nl~~~~---~~~----------~~~i~~-------~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~ 357 (402)
.-+..+++++.+++... +++ +..+.+ ..-+..+..+++.+ .|+++..+..++..|+..
T Consensus 363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaq- 440 (524)
T KOG4413|consen 363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQ- 440 (524)
T ss_pred chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcC-
Confidence 45677888888887532 111 111222 13355677788888 899999999999999875
Q ss_pred HHHHHHHH-HcCCHHHHHHHhccC---CHHHHHHHHHHHHHh
Q 015687 358 VNQIQAII-EAGIIGPLVNLLLNA---EFEIKKEAAWAISNA 395 (402)
Q Consensus 358 ~~~~~~l~-~~~~i~~L~~ll~~~---~~~v~~~a~~aL~nl 395 (402)
|=....+. ..|++..+.+.-... ..+.+.++|.+|.+-
T Consensus 441 PWalkeifakeefieiVtDastEhaKaakdAkYeccKAiaea 482 (524)
T KOG4413|consen 441 PWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAEA 482 (524)
T ss_pred cHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHHH
Confidence 33333444 466666666554332 235677777777664
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.4e-05 Score=69.41 Aligned_cols=209 Identities=19% Similarity=0.088 Sum_probs=152.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
+..++..+.+.++.++..++..|..+-. .+..+.|+.+|.+.+ +.++..++.+++....
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~------------~~a~~~L~~~L~~~~-p~vR~aal~al~~r~~-------- 146 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG------------RQAEPWLEPLLAASE-PPGRAIGLAALGAHRH-------- 146 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc------------hHHHHHHHHHhcCCC-hHHHHHHHHHHHhhcc--------
Confidence 7889999999999899999998877521 225788999998888 8999888877766221
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
...+.+..+|+++++.++..|+.+|+.+-.. ..++.|...+ .+.++.++..+++++..+-.
T Consensus 147 ----~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al-~d~~~~VR~aA~~al~~lG~--- 207 (410)
T TIGR02270 147 ----DPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYL-RDSDPEVRFAALEAGLLAGS--- 207 (410)
T ss_pred ----ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHH-cCCCHHHHHHHHHHHHHcCC---
Confidence 3467899999999999999999999988532 2455566666 88999999999999966632
Q ss_pred CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 233 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
....+.+..+...........+..++... +.+ .+++.|..++.++. ++..++.++|.+-.
T Consensus 208 -------~~A~~~l~~~~~~~g~~~~~~l~~~lal~--~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 208 -------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA--GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGD 267 (410)
T ss_pred -------HhHHHHHHHHHhccCccHHHHHHHHHHhC--Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCC
Confidence 13345555544444444443333333333 111 35688888887755 89999999997753
Q ss_pred CChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 313 ~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
+ ..++.|+..+... .++..|..++..|+.
T Consensus 268 --p---------~av~~L~~~l~d~---~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 268 --V---------EAAPWCLEAMREP---PWARLAGEAFSLITG 296 (410)
T ss_pred --c---------chHHHHHHHhcCc---HHHHHHHHHHHHhhC
Confidence 2 5678899998755 399999999999986
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.2e-05 Score=74.79 Aligned_cols=235 Identities=19% Similarity=0.161 Sum_probs=161.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCc--hhHHhhcCcHHHHHHhhcCCC------CHHHHHHHHHHHHHhh
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDD------FPQLQFEAAWALTNIA 143 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~--~~~~~~~g~i~~L~~lL~~~~------~~~~~~~a~~~L~~l~ 143 (402)
.+.+.+..|++.+.+.++.++..+.+++..++... .+.+.+.=+.+.+-.+|.+.. ....+..|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 57889999999998899999999999987542212 234667666788888988722 2567888999999988
Q ss_pred cCCCcch--HHHHhCCchHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHH
Q 015687 144 SGTSENT--RVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA 220 (402)
Q Consensus 144 ~~~~~~~--~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a 220 (402)
.. ++.. ..++ +-||.|+..+.+.+. ++...|+.+|..++. .+..+..+++.|.++.|...+.+ .+.....+
T Consensus 86 ~~-~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~A 159 (543)
T PF05536_consen 86 RD-PELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN--QSFQMEIA 159 (543)
T ss_pred CC-hhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh--CcchHHHH
Confidence 84 4433 3344 579999999987666 999999999999994 45568999999999999999844 55567778
Q ss_pred HHHHHHhhhCCCC----CchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHH-HHHHHHhC----cHHHHHHh
Q 015687 221 TWTLSNFCRGKPQ----PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK-IQAVIEAG----VCPRLVEL 291 (402)
Q Consensus 221 ~~~L~~l~~~~~~----~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~----~i~~L~~~ 291 (402)
..++.+++..... ........+++.+...+........-..|..|..+....+.. ........ +..-+..+
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 8888887766431 112223455666666666666666777788888776544211 11111222 33334444
Q ss_pred cCC-CChhhHHHHHHHHHHhhc
Q 015687 292 LRH-PSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 292 L~~-~~~~v~~~a~~~l~nl~~ 312 (402)
|.+ ..+.-|.+++...+.+..
T Consensus 240 L~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 240 LQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HhcCCCHHHHHHHHHHHHHHHH
Confidence 543 345667777777666653
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.1e-06 Score=61.28 Aligned_cols=125 Identities=19% Similarity=0.195 Sum_probs=105.8
Q ss_pred hccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCc
Q 015687 70 LESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (402)
Q Consensus 70 ~~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 148 (402)
++-+..++...+. .+.+.+...+.-|.+++- ++-+...+.+.+++..+++.|..++ +.+...++..|+|+|.+ +.
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAY--DP~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~d-~~ 90 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAY--DPINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCLD-KT 90 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc--CcchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhccC-hH
Confidence 4567778877764 678888888888888853 2445566788999999999999998 89999999999999986 88
Q ss_pred chHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhc
Q 015687 149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN 198 (402)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 198 (402)
+...+.+.+++|..+..++++...+...++.++..++......|+.+...
T Consensus 91 n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p 140 (173)
T KOG4646|consen 91 NAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSP 140 (173)
T ss_pred HHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccH
Confidence 99999999999999999999999999999999999997776677777543
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.3e-06 Score=62.74 Aligned_cols=115 Identities=13% Similarity=0.091 Sum_probs=99.8
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhH
Q 015687 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (402)
Q Consensus 114 g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (402)
+.+..|+.-.+...+.+-+.+..--|.|.+.+ |.+-..+.+..++..++.-|..++..+.+.++..|+|+|-+.. ...
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHH
Confidence 45667776666554488899999999999986 8888999999999999999999999999999999999998876 578
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.+.++++++.++..+ .++...+...++.++..|+...
T Consensus 94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence 899999999999999 7777788888999999998775
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3e-05 Score=66.95 Aligned_cols=230 Identities=14% Similarity=0.174 Sum_probs=153.8
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHH-hCCchHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhhHHHHh
Q 015687 121 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI-DHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLS 197 (402)
Q Consensus 121 ~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 197 (402)
++++.-+ +-.+..|+.|+.++... ++.+...- +...-..++.+++. ...+++-..+.+++-+..++. +.+.+-+
T Consensus 156 kl~Q~i~-~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K 232 (432)
T COG5231 156 KLSQLID-FLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDK 232 (432)
T ss_pred HHHHHHH-HHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHH
Confidence 3444444 56788999999999986 66665544 34455667777765 567888899999998876654 3322221
Q ss_pred -cCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch--hhhhchHHHHHHhcc---CCChhHHHHHHHHHHHhccC
Q 015687 198 -NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF--EQTRPALPALERLIH---SNDDEVLTDACWALSYLSDG 271 (402)
Q Consensus 198 -~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~l~~L~~lL~---~~~~~v~~~a~~~l~~l~~~ 271 (402)
...+.-++.+........+.+-++.++.|++...|.... ....+-+..-++.|. .+|++++.+.-.+=+.+-..
T Consensus 233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~ 312 (432)
T COG5231 233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN 312 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence 235666777776677889999999999999985433222 122232223334442 34666655433322222110
Q ss_pred ---------------------C---------hHHHHHHHHh--CcHHHHHHhcCCCChh-hHHHHHHHHHHhhcCChHHH
Q 015687 272 ---------------------T---------NDKIQAVIEA--GVCPRLVELLRHPSPS-VLIPALRTVGNIVTGDDMQT 318 (402)
Q Consensus 272 ---------------------~---------~~~~~~~~~~--~~i~~L~~~L~~~~~~-v~~~a~~~l~nl~~~~~~~~ 318 (402)
+ ...++.+.+. .++..|.++++..++. ...-||.-|+.++...|+..
T Consensus 313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~ 392 (432)
T COG5231 313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEIN 392 (432)
T ss_pred hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHH
Confidence 0 0122223333 4678888888877665 66678899999999999999
Q ss_pred HHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 015687 319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (402)
Q Consensus 319 ~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 354 (402)
..+...|+-..++.+++++ +++||-+|..++.-+.
T Consensus 393 ~vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i 427 (432)
T COG5231 393 AVLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHH
Confidence 9888999999999999999 9999999999887654
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.3e-06 Score=75.36 Aligned_cols=201 Identities=13% Similarity=0.136 Sum_probs=146.6
Q ss_pred HHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhccCC
Q 015687 175 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 253 (402)
Q Consensus 175 ~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~ 253 (402)
..++.+|..++..-...|.-+.+..+.+.|+++| +.++..+...+...++|+.-.. +-.......+++.++++++.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 3455566666666667788888888999999999 6677777777788888877665 3333444588999999999999
Q ss_pred ChhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH---HHHHHHhC----C
Q 015687 254 DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---QTQCIINH----Q 325 (402)
Q Consensus 254 ~~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~---~~~~i~~~----~ 325 (402)
|..++....|.+..+..+.....+ .++..-++..++.+..+++..++..++..+.|+.+.+.. ..+..+.. -
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 999999999999998866543322 355566789999999999999999999999999985432 11111111 2
Q ss_pred ChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHh
Q 015687 326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLL 377 (402)
Q Consensus 326 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll 377 (402)
+...|++.+... +|-.-.+.|+.|.++++.+..-...+++ ..++..+..+|
T Consensus 566 lfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 566 LFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 456777777777 7777778899999999865555555553 44555555554
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.8e-05 Score=73.20 Aligned_cols=275 Identities=17% Similarity=0.096 Sum_probs=171.0
Q ss_pred hhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 015687 111 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190 (402)
Q Consensus 111 ~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 190 (402)
.-.++++..+..+.+++ ..+++.|+..+-|++..... .-...-..+...+.++..+++..++ .++..+-.+..+-..
T Consensus 81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv~k~-~v~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKVAKG-EVLVYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIKDIVT 157 (675)
T ss_pred HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHHhcc-CcccchHHHHHHHHHHhcCCccccc-cHHHHHHHHHHHhcc
Confidence 34567899999999988 89999999999999875222 1222223567788888887777776 444555555433221
Q ss_pred hhH-HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhc
Q 015687 191 CRD-LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (402)
Q Consensus 191 ~~~-~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~ 269 (402)
-++ .+.-.+++|-|-..+ ...++..+.....-+..|-..++-.-..+...+++.|..+|.++.++|+.-+=.+++.+.
T Consensus 158 e~~~tFsL~~~ipLL~eri-y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRERI-YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred ccccccCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 111 221122333333334 345777777777666666555333334455888999999999999999876666665543
Q ss_pred c---CChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCch-hHHHH
Q 015687 270 D---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK-SIKKE 345 (402)
Q Consensus 270 ~---~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~-~v~~~ 345 (402)
. .++.. +--...++.++..+.++++.++..|+.-|..++.-.+...- ..-.|++..++..+.+. .+ .++..
T Consensus 237 ~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l-~~~s~il~~iLpc~s~~-e~~~i~~~ 311 (675)
T KOG0212|consen 237 AEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL-LYLSGILTAILPCLSDT-EEMSIKEY 311 (675)
T ss_pred HHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh-hhhhhhhhhcccCCCCC-ccccHHHH
Confidence 1 12211 11124678899999999999999998888888875543322 23347777888888777 44 45554
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHc-CCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 346 ACWTISNITA--GNVNQIQAIIEA-GIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 346 a~~~L~nl~~--~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
+..+-.-+.. +++...+. ++- .+++.|...+.++..+.|.+++.-+..+
T Consensus 312 a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l 363 (675)
T KOG0212|consen 312 AQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILL 363 (675)
T ss_pred HHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 4433222222 11111111 332 2577888888888888888887666554
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.1e-05 Score=67.96 Aligned_cols=187 Identities=16% Similarity=0.129 Sum_probs=118.6
Q ss_pred cCCCHHHHHHHHHHHHHHhccC-CCCchhHHhh--cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCC
Q 015687 81 WSDDRNIQLDATTQFRKLLSIE-RSPPINEVIQ--SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 157 (402)
Q Consensus 81 ~s~~~~~~~~a~~~l~~l~s~~-~~~~~~~~~~--~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 157 (402)
.+.|.+.+..|+..|+.++.+. .......+.. ..++..+...+.+.. ..+...|+.++..++...........+ .
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~~-~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYAD-I 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence 4678999999999999998764 1122222221 145567777777666 688899999999988754444444443 5
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC--CCc
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP--QPL 235 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~--~~~ 235 (402)
++|.|+..+.++...+++.|..+|..++...+.. ..+ .++.+...+ .+.++.++..++..+..+....+ ...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-~~~----~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYS-PKI----LLEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H---HH----HHHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH-HHH----HHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 7899999999999999999999999999876511 111 123333344 78899999999999888877654 122
Q ss_pred hh---hhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHH
Q 015687 236 FE---QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 275 (402)
Q Consensus 236 ~~---~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~ 275 (402)
.. ....+.+.+..++.+.+++|+..+-.++..+....++.
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 11 23568889999999999999999988888876544433
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=98.25 E-value=4e-06 Score=60.36 Aligned_cols=87 Identities=28% Similarity=0.443 Sum_probs=69.9
Q ss_pred HHHHHHhh-cCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 116 VPRFIEFL-SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 116 i~~L~~lL-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
|+.|++.| ++++ +.++..++++|+.+.. + .+++.|+.+++++++.++..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57899999 5555 9999999999995432 1 46999999999999999999999999882
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHH
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLS 225 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~ 225 (402)
....++.|..++.++.+..++..++++|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12378899999966667777888888874
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00024 Score=68.80 Aligned_cols=236 Identities=18% Similarity=0.160 Sum_probs=161.5
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh---hHHHHhcCChHHHHHHhccc------hhhHHHHHHHHHHHHhh
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC---RDLVLSNGALMPLLAQFNEH------AKLSMLRNATWTLSNFC 228 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---~~~~~~~g~i~~L~~~l~~~------~~~~~~~~a~~~L~~l~ 228 (402)
.+...+.+|++.+++=+=.++..+.+++...+.. +..+.+.=+..-+-++|... +....+.-+...|+.+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 4667778888877777777888888888766532 23466655566666666431 34567788889999999
Q ss_pred hCCCCCchhhhhchHHHHHHhccCCCh-hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 015687 229 RGKPQPLFEQTRPALPALERLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (402)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l 307 (402)
..+.......+.+.+|.|+.++.+.+. ++...++.+|..++..++ ..+.+++.|.++.|++.+.+ .+.....|+.++
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~-G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPE-GAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH-hHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 865444455667889999999987766 999999999999995554 55789999999999999977 556788899999
Q ss_pred HHhhcCChHHHHH---HHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH-HHHH----HHcCCHHHHHHHhcc
Q 015687 308 GNIVTGDDMQTQC---IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ-IQAI----IEAGIIGPLVNLLLN 379 (402)
Q Consensus 308 ~nl~~~~~~~~~~---i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~l----~~~~~i~~L~~ll~~ 379 (402)
.+++......... -.-..+++.+...+... ....+-+++..|+++....+.. .... .-..+...+..+|++
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 9988754421110 00114556666777665 6677888999999988754211 1111 112355666677766
Q ss_pred C-CHHHHHHHHHHHHHhh
Q 015687 380 A-EFEIKKEAAWAISNAT 396 (402)
Q Consensus 380 ~-~~~v~~~a~~aL~nl~ 396 (402)
. .+.-|..|+.....+.
T Consensus 243 r~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLL 260 (543)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 4 3555666655555543
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00063 Score=57.51 Aligned_cols=243 Identities=19% Similarity=0.237 Sum_probs=151.9
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHH
Q 015687 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI 161 (402)
Q Consensus 82 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 161 (402)
+.....++.|+..|+++.... . +..+.+...+++ ..++.+.+.+|+..... .++|.
T Consensus 16 s~~l~~r~rALf~Lr~l~~~~---~---------i~~i~ka~~d~s-~llkhe~ay~LgQ~~~~-----------~Av~~ 71 (289)
T KOG0567|consen 16 SQPLQNRFRALFNLRNLLGPA---A---------IKAITKAFIDDS-ALLKHELAYVLGQMQDE-----------DAVPV 71 (289)
T ss_pred cHHHHHHHHHHHhhhccCChH---H---------HHHHHHhcccch-hhhccchhhhhhhhccc-----------hhhHH
Confidence 344567778888888876422 1 444555544444 56667778888776543 47888
Q ss_pred HHHhhCC--CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC--------
Q 015687 162 FVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-------- 231 (402)
Q Consensus 162 L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-------- 231 (402)
|+..|.+ ..+-+|..|..+|+++. .+. .++.+-+.. +++-..+...+-.++..+-...
T Consensus 72 l~~vl~desq~pmvRhEAaealga~~--~~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~ 139 (289)
T KOG0567|consen 72 LVEVLLDESQEPMVRHEAAEALGAIG--DPE---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANS 139 (289)
T ss_pred HHHHhcccccchHHHHHHHHHHHhhc--chh---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhcccccccc
Confidence 8887765 55778888999998885 221 233344444 5555666666666665554332
Q ss_pred -------CCCchhhhhchHHHHHHhccCC-Chh-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHH
Q 015687 232 -------PQPLFEQTRPALPALERLIHSN-DDE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP 302 (402)
Q Consensus 232 -------~~~~~~~~~~~l~~L~~lL~~~-~~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~ 302 (402)
|.++ ....-+.-+-..|.+. .+. -++.+...|.|+. .++. +..+++-+..++.-.+..
T Consensus 140 ~p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~Eea---------I~al~~~l~~~SalfrhE 206 (289)
T KOG0567|consen 140 SPYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEEA---------INALIDGLADDSALFRHE 206 (289)
T ss_pred CccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHHH---------HHHHHHhcccchHHHHHH
Confidence 1111 1112233333333322 222 2445555555543 2222 455667777788889999
Q ss_pred HHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCC
Q 015687 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE 381 (402)
Q Consensus 303 a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 381 (402)
+.+++|.+-+. -.+|.|.+.|.. .+.+.||.+|+.+|+.|+. ++ .++.|.+.+.+.+
T Consensus 207 vAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 207 VAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHHHHHHcCCcH
Confidence 99999998653 346777776643 3478999999999999965 34 4566777888888
Q ss_pred HHHHHHHHHHHHHh
Q 015687 382 FEIKKEAAWAISNA 395 (402)
Q Consensus 382 ~~v~~~a~~aL~nl 395 (402)
+-|++.|..+|.-+
T Consensus 265 ~vv~esc~valdm~ 278 (289)
T KOG0567|consen 265 RVVRESCEVALDML 278 (289)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887654
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.1e-05 Score=71.55 Aligned_cols=239 Identities=18% Similarity=0.219 Sum_probs=143.5
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
+...|.+.|.+.+++.++..++.-|+-.+-++.. . .+...+-..|...+...-+.|..++|-+.-+...
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~-~------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~---- 482 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN-E------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN---- 482 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhccccc-H------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc----
Confidence 3455566665554455555555555443333211 1 1233444455544555555555555544322211
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHH--HhccCC
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALS--YLSDGT 272 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~--~l~~~~ 272 (402)
..+++-++..-...++..+.+-..-.++-...+.. ..+=|.+-+++.+.|+-++.....++. +...++
T Consensus 483 ---~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrq-------e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn 552 (929)
T KOG2062|consen 483 ---QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQ-------EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN 552 (929)
T ss_pred ---HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhh-------hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc
Confidence 11233444444344555566555444443332211 244456667788888888888776553 333333
Q ss_pred hHHHHHHHHhCcHHHHHHh-cCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 015687 273 NDKIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (402)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~~-L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 351 (402)
. +++..|+.. .++.+.+|+..|..+||-++..++++ +|..+.+|..++++.||-.++.+|+
T Consensus 553 n---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALG 614 (929)
T KOG2062|consen 553 N---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALG 614 (929)
T ss_pred h---------hhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHh
Confidence 2 356677776 57889999999999999999987743 6678888988889999999999999
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 352 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 352 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
-.|+|+...- .+..|-.+..+...-||+.|+.+++-+....
T Consensus 615 IaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 615 IACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred hhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 9888643311 2223333445666779999999888776543
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.001 Score=63.60 Aligned_cols=296 Identities=11% Similarity=0.104 Sum_probs=181.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhcCCCcchH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
+..+.+.|.|.|+.....|+.++.++-+.+ ....+. +-+-++|-+++ .+-++..|+-||-.+-..+|+..
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~re---~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~- 183 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSRE---MAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV- 183 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccHh---HHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc-
Confidence 455556677788888888888888875432 222221 22225555544 25678889999999888766532
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc---c--c-----------hhhH
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---E--H-----------AKLS 215 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~---~--~-----------~~~~ 215 (402)
-..+-+..++.+|.+.+-.+...+...+-.|+...|+.... .++.-+..|. . . +.+=
T Consensus 184 --~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~-----~~~~avs~L~riv~~~~t~~qdYTyy~vP~PW 256 (938)
T KOG1077|consen 184 --NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKT-----CLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPW 256 (938)
T ss_pred --ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhh-----hHHHHHHHHHHHHhhcccchhhceeecCCChH
Confidence 22357889999999988888888999998898776654222 2333333221 0 1 1233
Q ss_pred HHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCC----C---hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 015687 216 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN----D---DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 288 (402)
Q Consensus 216 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~----~---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L 288 (402)
+...++.+|.++-...+.........++..++...+.. + ......++.-.-+++.+.+..-+.+. .++..|
T Consensus 257 L~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~L 334 (938)
T KOG1077|consen 257 LQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQL 334 (938)
T ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHH
Confidence 45555555555511111112222234444444444321 1 11223333333344433332223232 457899
Q ss_pred HHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 015687 289 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 368 (402)
Q Consensus 289 ~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 368 (402)
..+|.+.+..+|.-|+..+..+++... ..+.+-.+ .+.++..|+...|..+|+.|+-.|-.+|.. ++...
T Consensus 335 g~fls~rE~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~----- 404 (938)
T KOG1077|consen 335 GQFLSHRETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQ----- 404 (938)
T ss_pred HHHhhcccccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHH-----
Confidence 999999999999999999999998754 33434433 778889998544899999999999999863 22333
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 369 IIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 369 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
++..|++.|.+.|+.+|++..-=+.-|+
T Consensus 405 IV~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 405 IVAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 4556777788888888887655444444
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.5e-06 Score=59.64 Aligned_cols=87 Identities=31% Similarity=0.517 Sum_probs=70.8
Q ss_pred HHHHHHhc-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 015687 243 LPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI 321 (402)
Q Consensus 243 l~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i 321 (402)
+|.|++.| .++++.++..++++|+.+. +. .+++.|..++.++++.++..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57888888 8889999999999998552 11 24789999999999999999999999883
Q ss_pred HhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 015687 322 INHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (402)
Q Consensus 322 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 351 (402)
+...++.|.+++.++.+..+|..|+++|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12478899999988746677999999885
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.2e-05 Score=67.83 Aligned_cols=191 Identities=15% Similarity=0.105 Sum_probs=121.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCC--chhhHHHHhc--CChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhch
Q 015687 167 SSPTDDVREQAVWALGNVAGDS--PKCRDLVLSN--GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPA 242 (402)
Q Consensus 167 ~~~~~~v~~~a~~~L~nl~~~~--~~~~~~~~~~--g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 242 (402)
.+.+.+.+..++.-|..++..+ ......+... .++..+...+ .+....+...++.++..++..-...-......+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQL-SDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 5678889999999999887655 2222222220 3445566666 566778999999999999987644444456789
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh---HHHH
Q 015687 243 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD---MQTQ 319 (402)
Q Consensus 243 l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~---~~~~ 319 (402)
+|.|++.+.+....++..+..+|..++........ + +++.+...+.+.++.+|..++..+..+....+ ....
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~-~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK-I----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H-H----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH-H----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 99999999999999999999999999876551111 1 15677778899999999999999999987555 1111
Q ss_pred H-HHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 015687 320 C-IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 364 (402)
Q Consensus 320 ~-i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 364 (402)
. ..-..+++.+...+.++ +++||..|-.++..+....++....+
T Consensus 171 ~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~a~~~ 215 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPERAESI 215 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH---
T ss_pred ccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHhhccc
Confidence 1 11135788899999999 99999999888888876545544433
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.2e-06 Score=54.19 Aligned_cols=55 Identities=27% Similarity=0.466 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHH
Q 015687 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (402)
Q Consensus 297 ~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl 353 (402)
|.+|..|+++||+++...+...... ...+++.|..+|.++ ++.||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~-~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPY-LPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHH-HHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 4689999999999998888776654 448899999999988 889999999999986
|
... |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.4e-05 Score=74.76 Aligned_cols=267 Identities=15% Similarity=0.147 Sum_probs=172.6
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcC----CC
Q 015687 73 LPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG----TS 147 (402)
Q Consensus 73 i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~----~~ 147 (402)
++.+...+++ ...+.+..|+..|..+...- .++..-..++|.++.++.++. .++|..|+.+|+.+... .+
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i----~de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYI----DDEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhc----chHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence 4555555554 45677888888888874322 122333457999999999998 99999999999887642 12
Q ss_pred cchHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCC------------------Cchh-----------hHHHHh
Q 015687 148 ENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGD------------------SPKC-----------RDLVLS 197 (402)
Q Consensus 148 ~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~------------------~~~~-----------~~~~~~ 197 (402)
.....+.+ =++|.|-.++.+ ...-+|-.-+..|+.||.- .+.. ...+..
T Consensus 499 ~daniF~e-YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~ 577 (1431)
T KOG1240|consen 499 SDANIFPE-YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH 577 (1431)
T ss_pred ccchhhHh-hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH
Confidence 22233333 367888888877 3333444444444444311 1110 011111
Q ss_pred cCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHH
Q 015687 198 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277 (402)
Q Consensus 198 ~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~ 277 (402)
.+...+.-|..++++-+++..+..+.-||.-... .....-+++.|..+|.+.|..++..-...+..++..-.-
T Consensus 578 --~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk--~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--- 650 (1431)
T KOG1240|consen 578 --TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK--EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--- 650 (1431)
T ss_pred --HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh--cccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee---
Confidence 2233333332555667778878778888765311 112245678888999999999998888888776643211
Q ss_pred HHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 278 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 278 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
.-++..++|.|.+-|.+..+.|...|++++.-++...--....+. .+++....+|-++ +.-||..++..+..+..
T Consensus 651 rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 651 RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 124456789999999999999999999999999875432222232 4566778888899 99999999999987765
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00051 Score=63.15 Aligned_cols=233 Identities=17% Similarity=0.071 Sum_probs=160.2
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccc-hhhHHHHHHHHHHHHhhhCCCCCchh
Q 015687 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFE 237 (402)
Q Consensus 159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~ 237 (402)
.+.+..++-+++.++|..+.+++..+..+... -..+.+.+.--.++.-|... .+..-+..|...+..+...+.. ...
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~~ 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PKE 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-ccc
Confidence 33444344445599999999999999888764 45566666555556666443 3455677888888888877422 223
Q ss_pred hhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 015687 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317 (402)
Q Consensus 238 ~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~ 317 (402)
...+++..++.+..+.++..+..++.+++.++-.+++ .+..+|++..|...+.++...+....+.++-.+... +..
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~-p~t 180 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS-PRT 180 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC-cch
Confidence 3467888999999999999999999999999987764 478899999999999876666778888888888764 434
Q ss_pred HHHHHhCCChHHHHHHhcCC------Cch--hHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHhccCCHHHHHHH
Q 015687 318 TQCIINHQALPCLLDLLTQN------YKK--SIKKEACWTISNITAGNVNQIQAIIEA-GIIGPLVNLLLNAEFEIKKEA 388 (402)
Q Consensus 318 ~~~i~~~~~l~~L~~ll~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a 388 (402)
++.+...--++.++.-+.+. .+. +.-..+..++..+...-+.-+....+. ..+..|+..|..+.+++|+..
T Consensus 181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~I 260 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAI 260 (371)
T ss_pred hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHH
Confidence 55444433355555444322 022 234455666666665433322222222 478899999999999999999
Q ss_pred HHHHHHhhc
Q 015687 389 AWAISNATS 397 (402)
Q Consensus 389 ~~aL~nl~~ 397 (402)
...+..+..
T Consensus 261 ldll~dllr 269 (371)
T PF14664_consen 261 LDLLFDLLR 269 (371)
T ss_pred HHHHHHHHC
Confidence 998887754
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00086 Score=64.94 Aligned_cols=283 Identities=13% Similarity=0.160 Sum_probs=180.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 153 (402)
..|.++|.|+....+..|..-+..+....++ . +..+|..++...+.+ .+++...---|...|+..++.. +
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d--v-----S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA--L 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD--V-----SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA--L 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc--H-----HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce--e
Confidence 5788999999999999999888877665422 2 235888999999988 8999888878888887644432 2
Q ss_pred HhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCC
Q 015687 154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233 (402)
Q Consensus 154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 233 (402)
. -|..+-+-|.++|+.+|..|+++|..+=. -++. +++-.-++-+..+..+-+++.|+.++-.|-+-++.
T Consensus 108 L---SIntfQk~L~DpN~LiRasALRvlSsIRv-------p~Ia-PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e 176 (968)
T KOG1060|consen 108 L---SINTFQKALKDPNQLIRASALRVLSSIRV-------PMIA-PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE 176 (968)
T ss_pred e---eHHHHHhhhcCCcHHHHHHHHHHHHhcch-------hhHH-HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh
Confidence 2 37888899999999999888888877621 1110 11111122223667889999999999998877543
Q ss_pred CchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 015687 234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 234 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~ 313 (402)
.. ..++..+-.+|.+.++-|.-.|+.++-.+|...-+.+ ++-..+++.+|-+-++-=+.-.+..|...+..
T Consensus 177 ~k----~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLI-----HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 177 QK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLI-----HKNYRKLCRLLPDVDEWGQVVLINMLTRYARH 247 (968)
T ss_pred hH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHh-----hHHHHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence 32 2566777788889999999999999988885433222 23356677777554433344455555444431
Q ss_pred C---hHHHH----------------------HHHhC---CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 015687 314 D---DMQTQ----------------------CIINH---QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 365 (402)
Q Consensus 314 ~---~~~~~----------------------~i~~~---~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 365 (402)
. +.... ...+. -++...-.+|.+. ++.|...++.+...++-.. +..
T Consensus 248 ~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~-n~sVVmA~aql~y~lAP~~--~~~--- 321 (968)
T KOG1060|consen 248 QLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR-NPSVVMAVAQLFYHLAPKN--QVT--- 321 (968)
T ss_pred cCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC-CcHHHHHHHhHHHhhCCHH--HHH---
Confidence 1 10000 00010 1233455566777 7888888888888776432 222
Q ss_pred HcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 366 EAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 366 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
.++..|+++|. ++..+|...+..+..+
T Consensus 322 --~i~kaLvrLLr-s~~~vqyvvL~nIa~~ 348 (968)
T KOG1060|consen 322 --KIAKALVRLLR-SNREVQYVVLQNIATI 348 (968)
T ss_pred --HHHHHHHHHHh-cCCcchhhhHHHHHHH
Confidence 24566777665 3344554444444443
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00029 Score=65.71 Aligned_cols=263 Identities=14% Similarity=0.193 Sum_probs=132.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHH
Q 015687 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 195 (402)
Q Consensus 116 i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 195 (402)
.|.|-..|++.- +.++.++++.++.++..+ ....+++ ..+..|-.+|.++....|-.|+++|..|+.-.|+....
T Consensus 266 rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v- 340 (898)
T COG5240 266 RPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV- 340 (898)
T ss_pred HHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee-
Confidence 455555666655 789999999999988753 2233333 46788888999999999999999999999877642111
Q ss_pred HhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChH-
Q 015687 196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND- 274 (402)
Q Consensus 196 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~- 274 (402)
..--++.| + .+.+. ..+.+++..|...............+|.+++=+.++=.-+..++++.|+..-.....
T Consensus 341 -cN~evEsL---I-sd~Nr---~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s 412 (898)
T COG5240 341 -CNKEVESL---I-SDENR---TISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLS 412 (898)
T ss_pred -cChhHHHH---h-hcccc---cchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHH
Confidence 11112222 2 22222 223344444444332222222233333333333333333444455444443321110
Q ss_pred HH----HHHHHhCc-------HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHH--HH----h--------CCChHH
Q 015687 275 KI----QAVIEAGV-------CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC--II----N--------HQALPC 329 (402)
Q Consensus 275 ~~----~~~~~~~~-------i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~--i~----~--------~~~l~~ 329 (402)
.. ..+.+.|+ ++.+...+. ..|.-++.|+..|+.+...+....-. ++ + ...+.+
T Consensus 413 ~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrh 491 (898)
T COG5240 413 YLDFLGSSLLQEGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRH 491 (898)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHH
Confidence 00 01111121 111222221 12223333333333333222110000 00 0 012223
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 330 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 330 L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
+..-+--. +.-+|..|+.+|+.++....+ ......+...|-+.+++.|.+||..|..+|.++-
T Consensus 492 IyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 492 IYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 33322223 567889999999887753221 1111224557788899999999999999999875
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0013 Score=65.38 Aligned_cols=280 Identities=15% Similarity=0.166 Sum_probs=170.2
Q ss_pred CcHHHHHHhhcC------C-CCHHHHHHHHHHHHHhhcCC--CcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHh
Q 015687 114 GVVPRFIEFLSR------D-DFPQLQFEAAWALTNIASGT--SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 184 (402)
Q Consensus 114 g~i~~L~~lL~~------~-~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl 184 (402)
|+++.+++.+.+ + +++.-+..|++.++++++-- +.--....+.-+++.+...++++.--+|..|||.++.+
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 467777787762 2 23566778899998888521 11122333444567777788889899999999999999
Q ss_pred hCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCC---chhhhhchHHHHHHhccCCChhHHHHH
Q 015687 185 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP---LFEQTRPALPALERLIHSNDDEVLTDA 261 (402)
Q Consensus 185 ~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~l~~L~~lL~~~~~~v~~~a 261 (402)
+...- .+...-..++....+.|..+.+-.++..|+.+|..+.++.+.. -...+.+.+..|+++.+.-+.+....+
T Consensus 490 ~~~df--~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v 567 (1010)
T KOG1991|consen 490 SSIDF--KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV 567 (1010)
T ss_pred HhccC--CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 84332 2222223367777788866888899999999999999886433 223446666677777766666655555
Q ss_pred HHHH-HHhccCChHHHHHHHHhCcHHHHHHhcCC---CCh---hhHHHHHHHHHHh---hc---CChHHHHHHHhCCChH
Q 015687 262 CWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLRH---PSP---SVLIPALRTVGNI---VT---GDDMQTQCIINHQALP 328 (402)
Q Consensus 262 ~~~l-~~l~~~~~~~~~~~~~~~~i~~L~~~L~~---~~~---~v~~~a~~~l~nl---~~---~~~~~~~~i~~~~~l~ 328 (402)
+..+ +..+..-......+.. .+.....+++.. .++ .=...|..+|..+ .. ..++..+ -++..++|
T Consensus 568 me~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~ 645 (1010)
T KOG1991|consen 568 MEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLP 645 (1010)
T ss_pred HHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHH
Confidence 5433 3333221111111111 233444555542 222 2222333333333 22 1222222 23446778
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCCC
Q 015687 329 CLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 329 ~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
.+-.+|.+. -.++-++++-.+.+++...++.--.+. |+++.+.+.+.....+--....-+|.|+++.|+
T Consensus 646 vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~ 714 (1010)
T KOG1991|consen 646 VIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGT 714 (1010)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCc
Confidence 888888877 778888888888888765433222222 357778888887777778888888888877765
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0013 Score=65.82 Aligned_cols=262 Identities=14% Similarity=0.197 Sum_probs=166.2
Q ss_pred hhccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCC
Q 015687 69 KLESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147 (402)
Q Consensus 69 ~~~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~ 147 (402)
.++.++-+...|.+ .++.++..|+..+..+.+. .+....+...|++..|+.+|.+. |..+..++.+|-.+++. +
T Consensus 1769 lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S~-~ 1843 (2235)
T KOG1789|consen 1769 LIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSSN-G 1843 (2235)
T ss_pred hhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhcC-c
Confidence 34566777777775 6788999999998887653 57788899999999999999875 58899999999999985 7
Q ss_pred cchHHHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC---chhhHHHHhc----------CChHHHHHHhcc---
Q 015687 148 ENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDS---PKCRDLVLSN----------GALMPLLAQFNE--- 210 (402)
Q Consensus 148 ~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~---~~~~~~~~~~----------g~i~~L~~~l~~--- 210 (402)
+......+.|++..+..++. +..+..|.+++..++.+..+. |..+-.+++. ..-+..+..+..
T Consensus 1844 ~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~E 1923 (2235)
T KOG1789|consen 1844 QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSE 1923 (2235)
T ss_pred HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCC
Confidence 77777777888888887664 577889999999999876442 2221111110 001112222200
Q ss_pred --------------------------------------------------------------------------------
Q 015687 211 -------------------------------------------------------------------------------- 210 (402)
Q Consensus 211 -------------------------------------------------------------------------------- 210 (402)
T Consensus 1924 nPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~ 2003 (2235)
T KOG1789|consen 1924 NPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTE 2003 (2235)
T ss_pred CcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHH
Confidence
Q ss_pred ------------chhhHHHHHHHHHHHHhhhCCCCCchh-hhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHH
Q 015687 211 ------------HAKLSMLRNATWTLSNFCRGKPQPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277 (402)
Q Consensus 211 ------------~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~ 277 (402)
++..........++..|.+..|..... ---|.+|.++..+...+..+-..+++.|..++.+.. ..+
T Consensus 2004 LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~-C~~ 2082 (2235)
T KOG1789|consen 2004 LLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQF-CCD 2082 (2235)
T ss_pred HHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccH-HHH
Confidence 001111111222222333322211111 113455666655555555555678888888876543 446
Q ss_pred HHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC-ChHHHHHHHhCCChHHHHHHhcCC
Q 015687 278 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQALPCLLDLLTQN 337 (402)
Q Consensus 278 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~-~~~~~~~i~~~~~l~~L~~ll~~~ 337 (402)
.+.....+..+++.+...-. ..--|+.+|..+... .++.....++.|++|.|+++|+..
T Consensus 2083 AMA~l~~i~~~m~~mkK~~~-~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKKQPS-LMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHhccccchhhHHHHHhcch-HHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 66666677777777754332 344777888777653 345556677899999999999765
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0032 Score=61.13 Aligned_cols=251 Identities=18% Similarity=0.173 Sum_probs=143.6
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCC
Q 015687 121 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 200 (402)
Q Consensus 121 ~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~ 200 (402)
+...+.. +-+|..|+.++..+-+-.++.... .+..+-.+|.+.++.|.-.|+.++-.+|-+.- +.+ ++.
T Consensus 150 ~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~q-----L~e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--Hkn 218 (968)
T KOG1060|consen 150 KAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKN 218 (968)
T ss_pred HHhcCCc-HHHHHHHHHhhHHHhcCChhhHHH-----HHHHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHH
Confidence 4444555 788888888888887766666553 34556667888888888888888887764421 222 234
Q ss_pred hHHHHHHhccchhhHHHHHHHHHHHHhhhCC-CCCc----------------------------hhhhhchHHHHHHhcc
Q 015687 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL----------------------------FEQTRPALPALERLIH 251 (402)
Q Consensus 201 i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~----------------------------~~~~~~~l~~L~~lL~ 251 (402)
...+.+++ .+-+.==+..+..+|..-|+.. +.+. .....-++...-.+|.
T Consensus 219 yrklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~ 297 (968)
T KOG1060|consen 219 YRKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ 297 (968)
T ss_pred HHHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh
Confidence 55666666 2222212233334444444443 2220 0111334555667788
Q ss_pred CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH------------
Q 015687 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ------------ 319 (402)
Q Consensus 252 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~------------ 319 (402)
+.++.+...++.++..++..... ..++..|+.+|.+. ..++.-.+..|..++...+.-..
T Consensus 298 S~n~sVVmA~aql~y~lAP~~~~-------~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssD 369 (968)
T KOG1060|consen 298 SRNPSVVMAVAQLFYHLAPKNQV-------TKIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSD 369 (968)
T ss_pred cCCcHHHHHHHhHHHhhCCHHHH-------HHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCC
Confidence 89999999999999999854321 23467788877643 34566666666666543331111
Q ss_pred -------------HHHhC----CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCH
Q 015687 320 -------------CIINH----QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF 382 (402)
Q Consensus 320 -------------~i~~~----~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 382 (402)
.++++ .+++-+...+.+. +..+...++.+|+.++...... ..-++.-|+.++.+.+.
T Consensus 370 p~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~~sv-----~~tCL~gLv~Llsshde 443 (968)
T KOG1060|consen 370 PTQVKILKLEILSNLANESNISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRIGSV-----TDTCLNGLVQLLSSHDE 443 (968)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhhCch-----hhHHHHHHHHHHhcccc
Confidence 01111 2233344444444 4456666666666555421111 12256677777777777
Q ss_pred HHHHHHHHHHHHhhc
Q 015687 383 EIKKEAAWAISNATS 397 (402)
Q Consensus 383 ~v~~~a~~aL~nl~~ 397 (402)
.|..+|...|..+..
T Consensus 444 ~Vv~eaV~vIk~Llq 458 (968)
T KOG1060|consen 444 LVVAEAVVVIKRLLQ 458 (968)
T ss_pred hhHHHHHHHHHHHHh
Confidence 777777777766653
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0022 Score=63.10 Aligned_cols=306 Identities=12% Similarity=0.069 Sum_probs=180.9
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHH
Q 015687 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI 161 (402)
Q Consensus 82 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 161 (402)
+..|.+...+...+.++.+.. +...-...-++...+..+..+..+-++..|+.+++..++ .+...... .+++..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~---~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~-p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSST---VINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQ-PMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccc-hHHHHH
Confidence 455777777777777765431 111111112355556666555446788888888887773 33322222 378888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc-cchhhHHHHHHHHHHHHhhhCCCCCchhhhh
Q 015687 162 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTR 240 (402)
Q Consensus 162 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 240 (402)
|.++....+.++.-....+|+..+..+|+.. ...+..+.|..+.++. .+.|+.+...+-.++..++... ........
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e 612 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQE 612 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHH
Confidence 9999988889999999999999999888753 3345556666666653 4567888888888888888752 22233446
Q ss_pred chHHHHHHhccCCC----hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHHHHHhhcCCh
Q 015687 241 PALPALERLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 241 ~~l~~L~~lL~~~~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L-~~~~~~v~~~a~~~l~nl~~~~~ 315 (402)
.++|.++..|..++ .....-++..|..+..+.+.-....+-.-++|.+.++. .+++......+-.|+..+...+.
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 78999999997765 45555566666655543322223333344677777775 45566788889999999988877
Q ss_pred HHHHHHHhCCChH------HHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH-HHHHHhccCCHHHHHHH
Q 015687 316 MQTQCIINHQALP------CLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG-PLVNLLLNAEFEIKKEA 388 (402)
Q Consensus 316 ~~~~~i~~~~~l~------~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~-~L~~ll~~~~~~v~~~a 388 (402)
++...--+.++.. .+-++|+...+......+...+..|..+-+..+...++. ++. .+.++-+.....+-..-
T Consensus 693 eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~lsviQsL 771 (1005)
T KOG2274|consen 693 EQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLSVIQSL 771 (1005)
T ss_pred HHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHHHHHHH
Confidence 7666555444433 344444333122222233333333433322222222221 122 22333333555666665
Q ss_pred HHHHHHhh
Q 015687 389 AWAISNAT 396 (402)
Q Consensus 389 ~~aL~nl~ 396 (402)
+.+++.+.
T Consensus 772 i~VfahL~ 779 (1005)
T KOG2274|consen 772 IMVFAHLV 779 (1005)
T ss_pred HHHHHHHh
Confidence 55555554
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00029 Score=72.68 Aligned_cols=311 Identities=13% Similarity=0.153 Sum_probs=182.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhc-cCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc-CCCcchH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLS-IERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTSENTR 151 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s-~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~-~~~~~~~ 151 (402)
..+...+.+.+|..+..++.=|..++. -...+.+.. -...+...|.++|.+.| +-.|..|.+-++-+-+ ++....+
T Consensus 821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l-~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVL-MLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhh-ccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHH
Confidence 455567778899888886543333322 111233322 22335688999999888 8889988888775433 2233333
Q ss_pred HHHhCCchHHHHHhhCC-----CCHHHHH-------------HHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchh
Q 015687 152 VVIDHGAVPIFVRLLSS-----PTDDVRE-------------QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK 213 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~-----~~~~v~~-------------~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~ 213 (402)
.+++ +.+..|..-=.+ ++.++.+ ....=|+|||.+-... + .+-.++++.+.+..
T Consensus 899 ~LV~-sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qP-d------LVYKFM~LAnh~A~ 970 (1702)
T KOG0915|consen 899 SLVD-SLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQP-D------LVYKFMQLANHNAT 970 (1702)
T ss_pred HHHH-HHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCCh-H------HHHHHHHHhhhhch
Confidence 3333 233333331010 1222221 1223455555432210 1 23345555544444
Q ss_pred hHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC
Q 015687 214 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 293 (402)
Q Consensus 214 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~ 293 (402)
-.-+.-|++.+..++.............++|.|...=.++|..|+.....+-.-|...+...++... ..+++.|+.-|.
T Consensus 971 wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt 1049 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNLT 1049 (1702)
T ss_pred hhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhcc
Confidence 5556667777888877654444455677788887777788888886665555555555444444333 357888999999
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHhC--CChHHHHHHhcCCCchhHHHH---HHHHHHHHhc--C---CHHHHHH
Q 015687 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLLTQNYKKSIKKE---ACWTISNITA--G---NVNQIQA 363 (402)
Q Consensus 294 ~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~--~~l~~L~~ll~~~~~~~v~~~---a~~~L~nl~~--~---~~~~~~~ 363 (402)
+..+.+|+.+|-++..+..+.+. ..+.+. .+...+.+.+++- .+.||+. ++.+|+.+|. + ++..-+.
T Consensus 1050 ~kewRVReasclAL~dLl~g~~~--~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~ 1126 (1702)
T KOG0915|consen 1050 SKEWRVREASCLALADLLQGRPF--DQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKE 1126 (1702)
T ss_pred chhHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHH
Confidence 99999999999999999998762 122221 3344555556555 5667754 4666666664 1 2222233
Q ss_pred HHHcCCHHHHHHH-hccCCHHHHHHHHHHHHHhhcCC
Q 015687 364 IIEAGIIGPLVNL-LLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 364 l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
.++. ++|.|++- +-+.-.++|.-++.++..++.+.
T Consensus 1127 ~l~~-iLPfLl~~gims~v~evr~~si~tl~dl~Kss 1162 (1702)
T KOG0915|consen 1127 ALDI-ILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSS 1162 (1702)
T ss_pred HHHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHhc
Confidence 3333 56666553 12556789999999999888654
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0084 Score=56.68 Aligned_cols=314 Identities=15% Similarity=0.135 Sum_probs=173.2
Q ss_pred HHHHHhhcCCCH---HHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc-
Q 015687 74 PAMVAGVWSDDR---NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN- 149 (402)
Q Consensus 74 ~~l~~~l~s~~~---~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~- 149 (402)
|.++..|..+++ ......+.+|..+.. + .+..+.+.. .++..+-..+....+.+.-..++.+|.++.....+.
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~-~-~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~ 78 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALST-S-PQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK 78 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHC-C-hhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence 566667765544 556667788888743 2 222333222 455555555554433566677777777776533222
Q ss_pred ----hHHHHhCCchHHHHHhhCC-----C--CHHHHHHHHHHHHHhhCCCchh-hHHHHhcCChHHHHHHhc--------
Q 015687 150 ----TRVVIDHGAVPIFVRLLSS-----P--TDDVREQAVWALGNVAGDSPKC-RDLVLSNGALMPLLAQFN-------- 209 (402)
Q Consensus 150 ----~~~~~~~g~i~~L~~lL~~-----~--~~~v~~~a~~~L~nl~~~~~~~-~~~~~~~g~i~~L~~~l~-------- 209 (402)
.....+..+++.+..+... . ++.+.+.+...++.+...-+.- ++.+ +..+..++.
T Consensus 79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~~ 153 (415)
T PF12460_consen 79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSPF 153 (415)
T ss_pred ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCCC
Confidence 2333344477877776532 1 2556666666666665443322 2222 333333331
Q ss_pred --cch-hhHHHHHHHHHHHH-hhhCCCCCchhhhhchHHHHHHhcc-CCChhHHHHHHHHHHHhccC--ChHHHHHHH--
Q 015687 210 --EHA-KLSMLRNATWTLSN-FCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDG--TNDKIQAVI-- 280 (402)
Q Consensus 210 --~~~-~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~~l~~~--~~~~~~~~~-- 280 (402)
... ...........+.. ++.-++..........+..++.+.. ..++..+..++.+++.+... .++....++
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~ 233 (415)
T PF12460_consen 154 QPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDS 233 (415)
T ss_pred CccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHH
Confidence 000 00111122222222 2222233322233345555555543 33466666666666666543 111111110
Q ss_pred -----------------------------------HhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH--------
Q 015687 281 -----------------------------------EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-------- 317 (402)
Q Consensus 281 -----------------------------------~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~-------- 317 (402)
....++.|+.+|.+ +.+...+.+.++-+....+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~ 311 (415)
T PF12460_consen 234 LLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHAN 311 (415)
T ss_pred HHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccch
Confidence 01234556666655 556778888888888763322
Q ss_pred -----HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHH
Q 015687 318 -----TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392 (402)
Q Consensus 318 -----~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 392 (402)
.+.++. .++|.|++..... +...|.....+|+++..+-|..+-.---..++|.|++.|..++.+++..++.+|
T Consensus 312 vklLykQR~F~-~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL 389 (415)
T PF12460_consen 312 VKLLYKQRFFT-QVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETL 389 (415)
T ss_pred hhhHHhHHHHH-HHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 233333 4677777777766 666888889999999998776442222245899999999999999999999999
Q ss_pred HHhhcCC
Q 015687 393 SNATSGG 399 (402)
Q Consensus 393 ~nl~~~~ 399 (402)
..+....
T Consensus 390 ~~~l~~~ 396 (415)
T PF12460_consen 390 KMILEEA 396 (415)
T ss_pred HHHHHcC
Confidence 9887654
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.1e-05 Score=70.70 Aligned_cols=263 Identities=16% Similarity=0.119 Sum_probs=162.9
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHH---HHHHhh--cCCCcch
Q 015687 76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAW---ALTNIA--SGTSENT 150 (402)
Q Consensus 76 l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~---~L~~l~--~~~~~~~ 150 (402)
+.....+.|+.++..|+..+..+-.+. .--+ -.....++.++++. .+++..|+. .++|.. ....+..
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL~~-----~~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGF--KLSK-----ACYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccc--cccH-----HHHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 566666777777777777777763221 1111 13567788888877 899988855 455555 1112222
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHH--hh
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN--FC 228 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~--l~ 228 (402)
+.-....++..++..+.+.+..||-.|+.+||.+-.-+.+ ++.+-.=..++.-+..... ..+..-...++ .+
T Consensus 275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee----~i~QTLdKKlms~lRRkr~--ahkrpk~l~s~GewS 348 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE----IIQQTLDKKLMSRLRRKRT--AHKRPKALYSSGEWS 348 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHH----HHHHHHHHHHhhhhhhhhh--cccchHHHHhcCCcc
Confidence 2222235788899999999999999999999987544333 2222122222221110000 00000011111 11
Q ss_pred hCC----CCCc--------hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC
Q 015687 229 RGK----PQPL--------FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296 (402)
Q Consensus 229 ~~~----~~~~--------~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~ 296 (402)
+++ ..+. .....|...++++-|.++--+|+.+|+..++.|+...+.... ..++.|+.+++++.
T Consensus 349 sGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~ 423 (823)
T KOG2259|consen 349 SGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEI 423 (823)
T ss_pred cCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHH
Confidence 111 1111 112256667888888888889999999999999987765432 34788999999999
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 015687 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 364 (402)
Q Consensus 297 ~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 364 (402)
..||..|+.++..|+.. ..++...++.+...|.+. ++++|.+.--.|.+.-..+-+.+..+
T Consensus 424 ~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~-s~dvRe~l~elL~~~~~~d~~~i~m~ 484 (823)
T KOG2259|consen 424 EVVRLKAIFALTMISVH------LAIREEQLRQILESLEDR-SVDVREALRELLKNARVSDLECIDMC 484 (823)
T ss_pred HHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999999998764 234445577788888877 88888877777766544555555443
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00059 Score=67.68 Aligned_cols=306 Identities=12% Similarity=0.113 Sum_probs=196.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
.+.....++....+.....+.-...+....+.++...+..+.++|.+-.++.+.+ ..++...+..+..+....+ ...
T Consensus 357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~-~~vr~a~a~~~~~~~p~~~--k~~ 433 (759)
T KOG0211|consen 357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNA-LHVRSALASVITGLSPILP--KER 433 (759)
T ss_pred hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhccc-chHHHHHhccccccCccCC--cCc
Confidence 3444555555555555555444444433333334444556666788888887777 7777777777666654333 111
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
-+ ....|.++..+++..+.++....+.+..+-...+...-.......++.+..+- ......++....+.+..++....
T Consensus 434 ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~-~d~~wRvr~ail~~ip~la~q~~ 511 (759)
T KOG0211|consen 434 TI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELA-EDLLWRVRLAILEYIPQLALQLG 511 (759)
T ss_pred Cc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhc-cchhHHHHHHHHHHHHHHHHhhh
Confidence 11 24678888889999999999999888766544433333444445666666665 44467788888888888876632
Q ss_pred CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 233 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
........-+.+...+.+...+++..+...+..++..... +.. ....++.++....+++...|...+.++.-++.
T Consensus 512 --~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~--~w~-~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~ 586 (759)
T KOG0211|consen 512 --VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS--EWA-RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE 586 (759)
T ss_pred --hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc--chh-HHHhhHHHHHHhcCcccchhhHHHHHHHHHHH
Confidence 1111122334444445555677888888888777643221 111 12346777777766678888888888876654
Q ss_pred CChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHH
Q 015687 313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 391 (402)
Q Consensus 313 ~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 391 (402)
- .-+.+....++|.+..+..++ .+.||-.++..|--+... .. ...+..+.|.+..+..+.+.+++..|..+
T Consensus 587 v---~g~ei~~~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~~L~~----~~~~~~v~pll~~L~~d~~~dvr~~a~~a 658 (759)
T KOG0211|consen 587 V---LGQEITCEDLLPVFLDLVKDP-VANVRINVAKHLPKILKLLDE----SVRDEEVLPLLETLSSDQELDVRYRAILA 658 (759)
T ss_pred H---hccHHHHHHHhHHHHHhccCC-chhhhhhHHHHHHHHHhhcch----HHHHHHHHHHHHHhccCcccchhHHHHHH
Confidence 2 112355567899999999999 999999999999988763 22 33444567788888888889999888888
Q ss_pred HHHhh
Q 015687 392 ISNAT 396 (402)
Q Consensus 392 L~nl~ 396 (402)
...+.
T Consensus 659 ~~~i~ 663 (759)
T KOG0211|consen 659 FGSIE 663 (759)
T ss_pred HHHHH
Confidence 76654
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.8e-05 Score=46.70 Aligned_cols=40 Identities=48% Similarity=0.642 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 358 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
++....+++.|+++.|+.++.++++++++.|+|+|.|++.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3467788899999999999999999999999999999973
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0052 Score=55.85 Aligned_cols=228 Identities=13% Similarity=0.168 Sum_probs=160.8
Q ss_pred CchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCC-----Cc----chHHHHhCCchHHHHHhhCCCCHHH--
Q 015687 105 PPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-----SE----NTRVVIDHGAVPIFVRLLSSPTDDV-- 173 (402)
Q Consensus 105 ~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~-----~~----~~~~~~~~g~i~~L~~lL~~~~~~v-- 173 (402)
+-.-.+++.++++.|+++|.+.+ .++-...+..+..+...+ .+ ....+++.++++.|++-++.-+..+
T Consensus 116 dLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvke 194 (536)
T KOG2734|consen 116 DLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKE 194 (536)
T ss_pred HHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchh
Confidence 34456889999999999999998 899999999988887532 12 2466778899999999887533333
Q ss_pred ----HHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc-chhhHHHHHHHHHHHHhhhCCC-CCchhhhhchHHHHH
Q 015687 174 ----REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALE 247 (402)
Q Consensus 174 ----~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~-~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~ 247 (402)
...++..+-|+..-.+.+...+.+.|.+.-|+..+.. ..-......+..+++-+..+.. +......-.++..++
T Consensus 195 ea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL 274 (536)
T KOG2734|consen 195 EADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLL 274 (536)
T ss_pred hhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHH
Confidence 4566778888888888888888999998888886533 2444566778888888877753 222222244556555
Q ss_pred Hhc----cCC-----ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh--H
Q 015687 248 RLI----HSN-----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD--M 316 (402)
Q Consensus 248 ~lL----~~~-----~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~--~ 316 (402)
+-+ .++ ..+..++...+|+.+......+ ..++...+++...-+++. ....+..++++|-....+.+ .
T Consensus 275 ~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~ 352 (536)
T KOG2734|consen 275 RQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTP 352 (536)
T ss_pred hhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchH
Confidence 544 111 3557778888888877666554 556666666666666655 55567889999999998876 6
Q ss_pred HHHHHHhCCChHHHHHHhc
Q 015687 317 QTQCIINHQALPCLLDLLT 335 (402)
Q Consensus 317 ~~~~i~~~~~l~~L~~ll~ 335 (402)
....+.+..++..+..+.-
T Consensus 353 ~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 353 NCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHHHHhHHHHHHHHh
Confidence 6677778777777776543
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00067 Score=66.75 Aligned_cols=163 Identities=13% Similarity=0.177 Sum_probs=123.3
Q ss_pred hhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc
Q 015687 213 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292 (402)
Q Consensus 213 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L 292 (402)
+..-....=.+++.+..+++ +...+|-+++...+.|.++..-.-.-+-..+...++.. +. ++..+..=+
T Consensus 33 ~~~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lL---avNti~kDl 101 (757)
T COG5096 33 DYKKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LL---AVNTIQKDL 101 (757)
T ss_pred hHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HH---HHHHHHhhc
Confidence 44444455566777777744 45677777777778899998888877878887766432 21 356777888
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Q 015687 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP 372 (402)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~ 372 (402)
+++++.+|..|+++++.+=. ++ ++. .+++++.+++.++ .+.||++|+.++..+-.-+++ .+-+.|.+..
T Consensus 102 ~d~N~~iR~~AlR~ls~l~~--~e----l~~-~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~ 170 (757)
T COG5096 102 QDPNEEIRGFALRTLSLLRV--KE----LLG-NIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLDKD---LYHELGLIDI 170 (757)
T ss_pred cCCCHHHHHHHHHHHHhcCh--HH----HHH-HHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcCHh---hhhcccHHHH
Confidence 99999999999999988732 22 222 5678899999999 999999999999999865444 3446778888
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 373 LVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 373 L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
+..++.+.+|.|..+|..+|..+-.
T Consensus 171 l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 171 LKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhch
Confidence 8899999999999999999987643
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0028 Score=62.53 Aligned_cols=168 Identities=17% Similarity=0.211 Sum_probs=123.8
Q ss_pred hcCCCHHHHHHHHHHHH-HHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCc
Q 015687 80 VWSDDRNIQLDATTQFR-KLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA 158 (402)
Q Consensus 80 l~s~~~~~~~~a~~~l~-~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 158 (402)
+.+++...+..|+..+. .+..++ + .. ..++.+++.+.+.+ .+++...-.-|.+.+...|+. .+. +
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~--d-ms-----sLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~--~lL---a 93 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE--D-MS-----SLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPEL--ALL---A 93 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC--C-hH-----HHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHH--HHH---H
Confidence 56667777777775544 444333 2 22 24677888888666 899998888888899876632 222 5
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhh
Q 015687 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238 (402)
Q Consensus 159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 238 (402)
++.+.+=+.++|+.+|..|+++++-+= . ..+. ..+++++.+++ .++++.+++.|+.++..+-+-++. ...
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~--~----~el~-~~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~~--l~~ 163 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLR--V----KELL-GNIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDKD--LYH 163 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcC--h----HHHH-HHHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCHh--hhh
Confidence 778888889999999999999999772 1 1222 22678888888 889999999999999999976432 222
Q ss_pred hhchHHHHHHhccCCChhHHHHHHHHHHHhccC
Q 015687 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (402)
Q Consensus 239 ~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 271 (402)
..|.+..+..++.+.||.+..+|+.++..+...
T Consensus 164 ~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 164 ELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 245677788888899999999999999888654
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0015 Score=59.15 Aligned_cols=223 Identities=13% Similarity=0.123 Sum_probs=160.8
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhccC----CCC----chhHHhhcCcHHHHHHhhcCCC-----CHHHHHHH
Q 015687 69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIE----RSP----PINEVIQSGVVPRFIEFLSRDD-----FPQLQFEA 135 (402)
Q Consensus 69 ~~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~----~~~----~~~~~~~~g~i~~L~~lL~~~~-----~~~~~~~a 135 (402)
.+.+++.++++|..++.++....+..+..+...+ ... -++.+++.++++.|++.+..-+ ...-.+.+
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 3468899999999999999999999998885432 112 2466788999999999887533 12234556
Q ss_pred HHHHHHhhcCCCcchHHHHhCCchHHHHHhhC-C-CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc---
Q 015687 136 AWALTNIASGTSENTRVVIDHGAVPIFVRLLS-S-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--- 210 (402)
Q Consensus 136 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~--- 210 (402)
+.++-|+..-.+.....+++.|.+.-|+.-+. . +-..-...|..+|.-+..++.+.+..+-...++..+++.+.-
T Consensus 203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 77888999988999999999988887777333 2 445566788888888888887778888888899999988731
Q ss_pred -c----hhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh--HHHHHHHHhC
Q 015687 211 -H----AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAG 283 (402)
Q Consensus 211 -~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~ 283 (402)
+ ...+...+..-+|+.+.....+........++....-+++. ....+..++..|-+...+++ +....+++.+
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l 361 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL 361 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 1 24567788888888877775444443444555554444444 55567788888888877665 5666788887
Q ss_pred cHHHHHHhc
Q 015687 284 VCPRLVELL 292 (402)
Q Consensus 284 ~i~~L~~~L 292 (402)
++..+...+
T Consensus 362 GLrtiF~~F 370 (536)
T KOG2734|consen 362 GLRTIFPLF 370 (536)
T ss_pred hHHHHHHHH
Confidence 777777664
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0012 Score=63.95 Aligned_cols=256 Identities=18% Similarity=0.193 Sum_probs=129.0
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
..+.+-.++.+.. +.+..+|+.++.++...++.... .++..|-.+++++...+|-.|.++|..+|.-.|.....
T Consensus 246 ~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 246 LFPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred HHHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 3455556666666 88999999999988765433222 27888888999999999999999999999776642111
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChH
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~ 274 (402)
+ .--++.++ .+.+ +..+..++..|..............-++.+++=+.++..-+..++..+|+........
T Consensus 320 c--N~elE~lI----td~N---rsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~ 390 (865)
T KOG1078|consen 320 C--NLDLESLI----TDSN---RSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHT 390 (865)
T ss_pred c--chhHHhhh----cccc---cchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHH
Confidence 0 00122222 1111 1222333333333322222222223333333333333333344444444333211000
Q ss_pred H-----HHHHHHhC-------------------------cHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC
Q 015687 275 K-----IQAVIEAG-------------------------VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 324 (402)
Q Consensus 275 ~-----~~~~~~~~-------------------------~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~ 324 (402)
. ...+.+.| ++..|+.++.+.. ...-+.++++-+....+.. .-..
T Consensus 391 ~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a---~~Ps 465 (865)
T KOG1078|consen 391 VMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKA---PNPS 465 (865)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCC---CCcc
Confidence 0 00011111 1222222221111 1112222222222111100 0011
Q ss_pred CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 325 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
..+..+.+.+--. +..+|..|..+|.++.++++.-.. .+...|.+.+.+.|..+|..|..+|.++-
T Consensus 466 kyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 466 KYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 2233334333333 678899999999999865444222 25567888899999999999999999886
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0024 Score=64.82 Aligned_cols=232 Identities=17% Similarity=0.168 Sum_probs=150.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCC-CCchhH-HhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCc-
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIER-SPPINE-VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE- 148 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~-~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~- 148 (402)
.+|.++-++..++..++..|+..|..++..-+ -++.+. +...=++|.|-.++.+++...++..-+.+|..+|..-..
T Consensus 463 VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rF 542 (1431)
T KOG1240|consen 463 VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRF 542 (1431)
T ss_pred hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHH
Confidence 46888889999999999999999999876432 233333 333447888889988844356677767777766631100
Q ss_pred --chHHHHhC-------------------------CchHHHHHhhCCCCHHHHHHHHHHHHHhhCC--CchhhHHHHhcC
Q 015687 149 --NTRVVIDH-------------------------GAVPIFVRLLSSPTDDVREQAVWALGNVAGD--SPKCRDLVLSNG 199 (402)
Q Consensus 149 --~~~~~~~~-------------------------g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~~g 199 (402)
....+..+ ++-.....++.++.+.|+...+..|+-||.. ....-+.
T Consensus 543 le~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~----- 617 (1431)
T KOG1240|consen 543 LELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDV----- 617 (1431)
T ss_pred HHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccc-----
Confidence 01111111 1223344466666667777777776666621 1111111
Q ss_pred ChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHH
Q 015687 200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 279 (402)
Q Consensus 200 ~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 279 (402)
++..|+..| .+.|..++......+..+|-.-.. ......++|.|.+.|.+..+.|...|+.++.-|+...--....+
T Consensus 618 iLshLiTfL-NDkDw~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v 694 (1431)
T KOG1240|consen 618 ILSHLITFL-NDKDWRLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV 694 (1431)
T ss_pred hHHHHHHHh-cCccHHHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH
Confidence 466677777 555777777666666655533211 11235678889999999999999999999999986544222223
Q ss_pred HHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 015687 280 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 280 ~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~ 313 (402)
. .+++....+|-+++.-+|..++.+|..+...
T Consensus 695 ~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 695 K--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred H--HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 2 4677888899999999999999999888753
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0089 Score=57.51 Aligned_cols=303 Identities=17% Similarity=0.166 Sum_probs=185.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
+--+.+++|.++-...++-+-..+.-++..+ .+..+. ++..+.+=|.+.+ +.....|+.+++|+.+ .+...
T Consensus 75 GhmEaV~LLss~kysEKqIGYl~is~L~n~n-~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~e 145 (938)
T KOG1077|consen 75 GHMEAVNLLSSNKYSEKQIGYLFISLLLNEN-SDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAE 145 (938)
T ss_pred chHHHHHHhhcCCccHHHHhHHHHHHHHhcc-hHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHH
Confidence 4456677787766555555544444444322 233332 2445555566666 7888999999999987 45555
Q ss_pred HHHhCCchHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 152 VVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
.+.. -|+ ++|-+ ..+-++..|+-+|..|-...|. .+-..+-...++.+| .+.+-.+...+...+..|+.
T Consensus 146 a~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk 216 (938)
T KOG1077|consen 146 AFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVK 216 (938)
T ss_pred Hhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHH
Confidence 5443 244 45544 3466888888899889877764 333335678899999 66677788888888888888
Q ss_pred CCCCCchhhhhchHHHHHHhccC-------------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC-
Q 015687 230 GKPQPLFEQTRPALPALERLIHS-------------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP- 295 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~-------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~- 295 (402)
..|.........++..|..+... +.|-+....+++|.++-...+.... ..-..+++.++...+..
T Consensus 217 ~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r-~~l~evl~~iLnk~~~~~ 295 (938)
T KOG1077|consen 217 KNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTR-ARLNEVLERILNKAQEPP 295 (938)
T ss_pred cCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHH-HHHHHHHHHHHhccccCc
Confidence 76544433333334433333211 3477888899999887433222111 11112344444444321
Q ss_pred ---C---hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 015687 296 ---S---PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 369 (402)
Q Consensus 296 ---~---~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 369 (402)
+ .......++-.-+++.+-+..-+.+. ..+..|-++|.+. ...+|--|.-.++.++... ..+..+-.+
T Consensus 296 ~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~-~s~davK~h-- 369 (938)
T KOG1077|consen 296 KSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR-ETNIRYLALESMCKLASSE-FSIDAVKKH-- 369 (938)
T ss_pred cccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc-cccchhhhHHHHHHHHhcc-chHHHHHHH--
Confidence 1 11223344444445444332222222 4567888999988 8899999988888888742 223344333
Q ss_pred HHHHHHHhc-cCCHHHHHHHHHHHHHhhcCC
Q 015687 370 IGPLVNLLL-NAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 370 i~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~ 399 (402)
...++..|+ ..|..+|+.|+..|..++..+
T Consensus 370 ~d~Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 370 QDTIINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence 677888888 688999999999998887654
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.7e-05 Score=45.71 Aligned_cols=39 Identities=38% Similarity=0.753 Sum_probs=35.9
Q ss_pred CcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015687 147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 185 (402)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 185 (402)
++++..+++.|+++.|+.++.+++.+++..++|+|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347788899999999999999999999999999999997
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.025 Score=57.13 Aligned_cols=310 Identities=15% Similarity=0.119 Sum_probs=175.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.+..+++.+++.|..++..|+..+.++.+.- | .. +.+ .++...++++...+++..=..|+-+|+.+|...----.
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rl--p-~~-Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRL--P-PE-LAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccC--c-HH-HHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 4678888899999999999999999997643 3 11 111 14555566555443345556888899998874222222
Q ss_pred HHHhCCchHHHHHhhCC--------CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHh----ccchhhHHHHH
Q 015687 152 VVIDHGAVPIFVRLLSS--------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF----NEHAKLSMLRN 219 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l----~~~~~~~~~~~ 219 (402)
.+. .++|.++.-|.- ....||+.|+++++.++...... .+ + +++..|...| .-+.+...++.
T Consensus 417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~--~l-~-p~l~~L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS--DL-K-PVLQSLASALLIVALFDREVNCRRA 490 (1133)
T ss_pred HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh--hh-h-HHHHHHHHHHHHHHhcCchhhHhHH
Confidence 222 356666665531 34679999999999988554321 11 1 1222222222 14567778888
Q ss_pred HHHHHHHhhhCCCCC----chh-----------------------hhhc----hHHHHHHh-ccCCChhHHHHHHHHHHH
Q 015687 220 ATWTLSNFCRGKPQP----LFE-----------------------QTRP----ALPALERL-IHSNDDEVLTDACWALSY 267 (402)
Q Consensus 220 a~~~L~~l~~~~~~~----~~~-----------------------~~~~----~l~~L~~l-L~~~~~~v~~~a~~~l~~ 267 (402)
|..++-......++. +.. ...+ ++..++.. +.+-|..+++.+.++|..
T Consensus 491 AsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~ 570 (1133)
T KOG1943|consen 491 ASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHK 570 (1133)
T ss_pred HHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 888887665442221 000 0011 22222211 345689999999999999
Q ss_pred hccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH---HHHH---HhCC---ChHHHHH-HhcCC
Q 015687 268 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ---TQCI---INHQ---ALPCLLD-LLTQN 337 (402)
Q Consensus 268 l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~---~~~i---~~~~---~l~~L~~-ll~~~ 337 (402)
|+...++ ....++++++++.....+...+.-+..+.|.++.+.... ...+ .-++ .++.+.. .+..+
T Consensus 571 Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg 646 (1133)
T KOG1943|consen 571 LSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRG 646 (1133)
T ss_pred HHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccc
Confidence 9865543 334577888888887777777766655555555322110 0000 0112 1222222 22222
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 338 YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 338 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
...-++...+..+-++...........+-.+.-..+.+.+..++ .+|..|.++++.++.
T Consensus 647 ~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 647 QGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred hHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence 12345556666777776654443333333333334444443344 788888888887653
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00027 Score=51.36 Aligned_cols=92 Identities=14% Similarity=0.193 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc
Q 015687 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 379 (402)
Q Consensus 300 ~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 379 (402)
|..++.+|+.++.+-.......++ .++|+++..+.++ ++.||..||-+|.|++....+.+.... ..+++.|.+++.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 566778888887766655554444 6889999999999 999999999999999975444333322 3489999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 015687 380 AEFEIKKEAAWAISNA 395 (402)
Q Consensus 380 ~~~~v~~~a~~aL~nl 395 (402)
.++.||..| ..|-++
T Consensus 80 ~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRL 94 (97)
T ss_pred CchhHHHHH-HHHHHH
Confidence 999998877 555544
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00023 Score=51.71 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015687 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIE 366 (402)
Q Consensus 299 v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 366 (402)
++...+++|+|++..++...+.+.+.|++|.++..-.- ..+|-+|+.|.|++-|++.++++....+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 46678999999999999999999999999999986632 238999999999999999999988766554
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00013 Score=53.02 Aligned_cols=67 Identities=16% Similarity=0.354 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhh--CCCCHHHHHHHHHHHHHhhCCCchhhHHHHh
Q 015687 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGDSPKCRDLVLS 197 (402)
Q Consensus 131 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 197 (402)
++...+.+|+|++..++...+.+.+.|++|.++... ++.+|-+++-|++++.||+.++++++..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 356778999999999999999999999999999965 4578999999999999999999998777654
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.002 Score=58.28 Aligned_cols=241 Identities=13% Similarity=0.134 Sum_probs=157.7
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh-----HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHH
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR-----DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~-----~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 226 (402)
.+...+.+..|+..|..-+-+.+..+.....++.......+ +.+.. ..-+.+..++....++++.-.+...|..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 34455889999999998899999999999999986654332 22322 1233334444344577777788888888
Q ss_pred hhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcCCCChhhHHHH
Q 015687 227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIPA 303 (402)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~~L~~~~~~v~~~a 303 (402)
++++.+-.......+.+-.+....+.++-++..+|..++..+..........++.. ..+.....+|.+++.-++..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 88774333333346677778888889999999999999998776665555555555 356778888999999999999
Q ss_pred HHHHHHhhcCChHH---HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHH-H--cCCHHHHHH
Q 015687 304 LRTVGNIVTGDDMQ---TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAII-E--AGIIGPLVN 375 (402)
Q Consensus 304 ~~~l~nl~~~~~~~---~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~-~--~~~i~~L~~ 375 (402)
+..||.+....... ..++-+..-+..++.+|.+. +..++-+|..++--+.+ ..+..+..++ . ..++..|-+
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~ 308 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKD 308 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHh
Confidence 99999999754422 23333446688999999998 99999999999998887 3344455544 2 223444444
Q ss_pred HhccC--CHHHHHHHHHHHHH
Q 015687 376 LLLNA--EFEIKKEAAWAISN 394 (402)
Q Consensus 376 ll~~~--~~~v~~~a~~aL~n 394 (402)
...+. |.....+=...+..
T Consensus 309 f~~~~~~D~qf~~EK~~li~~ 329 (335)
T PF08569_consen 309 FHTDRTDDEQFEDEKAYLIKQ 329 (335)
T ss_dssp TTTT--S-CHHHHHHHHHHHH
T ss_pred CCCCCCccccHHHHHHHHHHH
Confidence 43333 44444444444433
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0059 Score=62.11 Aligned_cols=242 Identities=12% Similarity=0.100 Sum_probs=155.0
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHh--CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hhhHHHH
Q 015687 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLVL 196 (402)
Q Consensus 120 ~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~ 196 (402)
.....+.++..+|..+..+|..++.. +.......+ ..+...|..-+++.....+...+.+|..|....+ +..+.+.
T Consensus 659 ~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~ 737 (1176)
T KOG1248|consen 659 DPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP 737 (1176)
T ss_pred hHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 33334443389999999999999886 322222111 1244555556666677788888888888876555 2222222
Q ss_pred hcCChHHHHHHhccchhhHHHHHHHHHHHHhh--hCC----CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhcc
Q 015687 197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFC--RGK----PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270 (402)
Q Consensus 197 ~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~--~~~----~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~ 270 (402)
. .|+.++-.+ +..+...++++..+|..++ ... ..+....+..+++.+...+-.+...+....+-++..+..
T Consensus 738 k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 738 K--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ 814 (1176)
T ss_pred H--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 2 333344344 6678888999999998888 221 222345556677777666554444444443555555543
Q ss_pred CChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHH
Q 015687 271 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 350 (402)
Q Consensus 271 ~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 350 (402)
...+....-.-.++++.+..+|.+.+..++..|+..+..++..-++..-......++|.+..+++.. .-.+|..+-..|
T Consensus 815 e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 815 EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLLL 893 (1176)
T ss_pred HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHHH
Confidence 3222222222235677788888999999999999999999998776544444446888999988877 778888888888
Q ss_pred HHHhc-CCHHHHHHHHH
Q 015687 351 SNITA-GNVNQIQAIIE 366 (402)
Q Consensus 351 ~nl~~-~~~~~~~~l~~ 366 (402)
--++. ...+.++.+..
T Consensus 894 ekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 894 EKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHhCHHHHHhhCH
Confidence 87776 45666666665
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0056 Score=61.61 Aligned_cols=261 Identities=15% Similarity=0.137 Sum_probs=163.3
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhh
Q 015687 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCR 192 (402)
Q Consensus 114 g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~ 192 (402)
+++..|.+.+++.+ ..++-.|+..++.++...|. .+.+ .+|...+.++.- +++.....++-+|+.++..+--.-
T Consensus 341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~---~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPP---ELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcH---HHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 56778888888888 79999999999999987662 2222 356666665553 346677799999999986653222
Q ss_pred HHHHhcCChHHHHHHhcc-------chhhHHHHHHHHHHHHhhhCC-CCCchhhhhchHHHH-HHhccCCChhHHHHHHH
Q 015687 193 DLVLSNGALMPLLAQFNE-------HAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL-ERLIHSNDDEVLTDACW 263 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~-------~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L-~~lL~~~~~~v~~~a~~ 263 (402)
..+.+ +++.++.-+.. .....++..||++++.+.+.. |..-..+...+.+.| ...+.+.+-.++..|..
T Consensus 416 s~l~d--VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLLED--VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHHHH--HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 23222 55556555521 124578999999999999886 332233334444443 34456677888888888
Q ss_pred HHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHH-hcCCCchhH
Q 015687 264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL-LTQNYKKSI 342 (402)
Q Consensus 264 ~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~l-l~~~~~~~v 342 (402)
++........+. . .| + .|+...+.-.-..+.++...+..-....+.++..+++ .++.. +.+= ++.+
T Consensus 494 AlqE~VGR~~n~-p----~G-i-~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HW-d~~i 560 (1133)
T KOG1943|consen 494 ALQENVGRQGNF-P----HG-I-SLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHW-DVKI 560 (1133)
T ss_pred HHHHHhccCCCC-C----Cc-h-hhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccc-cHHH
Confidence 887655321111 0 01 1 1222222223345566666666666666655554444 23322 4444 7889
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 343 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 343 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
|..++|+|.+|+...|+. ...+++|.|+......+...+.-+..+.+.++.+
T Consensus 561 relaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 561 RELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred HHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence 999999999987755553 3345788888888888888777666666655543
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0056 Score=60.44 Aligned_cols=225 Identities=15% Similarity=0.160 Sum_probs=155.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHH
Q 015687 167 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPAL 246 (402)
Q Consensus 167 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L 246 (402)
.+..+.+.-.+.|+++..+...+.....+. .++...+..+..+..+.++..++.+++..|. +.........++..|
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L 535 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGL 535 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHH
Confidence 456677777899999877655333222221 2556666777666777888888888888883 333444556788888
Q ss_pred HHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc--CCCChhhHHHHHHHHHHhhcCChHHHHHHHhC
Q 015687 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 324 (402)
Q Consensus 247 ~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L--~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~ 324 (402)
.++......++......+|+..+..+++. ....++.++|.++.++ .++++.+...+-.++-.++..... ..-...
T Consensus 536 ~qlas~~s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~--~g~m~e 612 (1005)
T KOG2274|consen 536 LQLASKSSDEVLVLLMEALSSVVKLDPEF-AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAAN--YGPMQE 612 (1005)
T ss_pred HHHcccccHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh--hcchHH
Confidence 88888888999999999999999887765 3456677888888776 456777777777777666652211 111233
Q ss_pred CChHHHHHHhcCCCc----hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH-hccCCHHHHHHHHHHHHHhhcCC
Q 015687 325 QALPCLLDLLTQNYK----KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL-LLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 325 ~~l~~L~~ll~~~~~----~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
..+|.++..|..+ . +.....++-+|.-+..+.|.-+...+-.-++|.+.++ ++++|...-..+..+|..+.+.+
T Consensus 613 ~~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 613 RLIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 6799999999877 4 4566667777777777544434443333378888887 46677888888888888887653
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00025 Score=64.81 Aligned_cols=307 Identities=16% Similarity=0.200 Sum_probs=163.3
Q ss_pred HHHHHhhcC--CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc-----CC
Q 015687 74 PAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS-----GT 146 (402)
Q Consensus 74 ~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~-----~~ 146 (402)
......+.+ .....+..+...|..++.. .....+....+...+...+...+ +.++..++.++-.+.. ..
T Consensus 256 ~~~~~~~~~~~~ps~~rle~~qvl~~~a~~---~~~~~~~~~~l~RvI~~~~~~~~-p~~~l~~a~ll~~lg~~lv~~~~ 331 (728)
T KOG4535|consen 256 SDAGSAAGSTYEPSPMRLEALQVLTLLARY---FSMTQAYLMELGRVICKCMGEAD-PSIQLHGAKLLEELGTGLIQQYK 331 (728)
T ss_pred hhHHhhhcCccCCchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccCCCCC-hHHHHHHHHHHHHHHHHHhhhcC
Confidence 344444443 2345667777777666421 11222222223334444455556 8899999988876643 23
Q ss_pred CcchHHHHhCCchHHHH------Hhh-CCCCHHHHHHHHHHHHHhhCCC----chhhHHHHhcCChHHHHHHhccchhhH
Q 015687 147 SENTRVVIDHGAVPIFV------RLL-SSPTDDVREQAVWALGNVAGDS----PKCRDLVLSNGALMPLLAQFNEHAKLS 215 (402)
Q Consensus 147 ~~~~~~~~~~g~i~~L~------~lL-~~~~~~v~~~a~~~L~nl~~~~----~~~~~~~~~~g~i~~L~~~l~~~~~~~ 215 (402)
|+..+.-...|.+-... ... ++..+..+..++-++.++.... |.-+.. ..+.+..=..++.+.-
T Consensus 332 P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T-----~~~~Fl~GC~d~~~~l 406 (728)
T KOG4535|consen 332 PDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT-----LCITFLLGCNDSKNRL 406 (728)
T ss_pred CCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh-----hhHHHHhcccchHHHH
Confidence 33332222222121111 111 2234556677777787775322 111111 1111111122334444
Q ss_pred HHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC----Ch---HHHHHHHHhCcHHH
Q 015687 216 MLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG----TN---DKIQAVIEAGVCPR 287 (402)
Q Consensus 216 ~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~----~~---~~~~~~~~~~~i~~ 287 (402)
+...|..++.-+.-+. ..........+...+...+.+..-..+..+.|+++|+++. .+ .....+. .-.+..
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLK 485 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHH
Confidence 5666666666555554 3334455567777777778777888999999999999852 11 1111111 111222
Q ss_pred HHHhc---CCCChhhHHHHHHHHHHhhcCChHHHHHHHhC-------CChHHHHH-HhcCCCchhHHHHHHHHHHHHhcC
Q 015687 288 LVELL---RHPSPSVLIPALRTVGNIVTGDDMQTQCIINH-------QALPCLLD-LLTQNYKKSIKKEACWTISNITAG 356 (402)
Q Consensus 288 L~~~L---~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~-------~~l~~L~~-ll~~~~~~~v~~~a~~~L~nl~~~ 356 (402)
++..- ...+..|+..+.++|||+...- +.+++. +.+..+.. ..-.. ...||-++|++++|+..+
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvl----q~i~~~~~~e~~~~~~~~l~~~v~~~~-~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFL----QPIEKPTFAEIIEESIQALISTVLTEA-AMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHH----HHhhhccHHHHHHHHHHhcccceeccc-ccccchHHHHHHHHhhcC
Confidence 22221 2345789999999999997532 222222 11111211 12223 678999999999999985
Q ss_pred CHHHHHHH-HHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHh
Q 015687 357 NVNQIQAI-IEAGIIGPLVNLLLN-AEFEIKKEAAWAISNA 395 (402)
Q Consensus 357 ~~~~~~~l-~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl 395 (402)
..-..+.. ...-+++.|..++.+ .+++||..|+.+|.--
T Consensus 561 ~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp 601 (728)
T KOG4535|consen 561 PALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVP 601 (728)
T ss_pred ccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence 21101110 122357788888765 7899999999988643
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0073 Score=57.36 Aligned_cols=232 Identities=14% Similarity=0.117 Sum_probs=153.8
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC-----CCHHHHHHHHHHHHHhhcCCCcchHHHHh
Q 015687 81 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-----DFPQLQFEAAWALTNIASGTSENTRVVID 155 (402)
Q Consensus 81 ~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 155 (402)
.+.++.....|+++|++++-.. ....+.+.+.|..+.+++.|+.. + .++.+...++|.-++..+++.+..+++
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~ 119 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIE 119 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 4567899999999999998754 44556788999999999999876 4 788999999998888877888777666
Q ss_pred C-CchHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccc------
Q 015687 156 H-GAVPIFVRLLSS-----------------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH------ 211 (402)
Q Consensus 156 ~-g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~------ 211 (402)
. +++..+...|.. .+......++.++.|+....+.... -...+.++.++.++...
T Consensus 120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~ 198 (446)
T PF10165_consen 120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPS 198 (446)
T ss_pred HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCC
Confidence 4 777777775521 1445677888999999876654322 12233555555554221
Q ss_pred --hhhHHHHHHHHHHHHhhhCC------------CCCchhhhhchHHHHHHhcc----C-C---ChhHHHHHHHHHHHhc
Q 015687 212 --AKLSMLRNATWTLSNFCRGK------------PQPLFEQTRPALPALERLIH----S-N---DDEVLTDACWALSYLS 269 (402)
Q Consensus 212 --~~~~~~~~a~~~L~~l~~~~------------~~~~~~~~~~~l~~L~~lL~----~-~---~~~v~~~a~~~l~~l~ 269 (402)
+......++.-+|.|+--.. ...........+..|+.+|. . . -.+.....+.+|..++
T Consensus 199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~ 278 (446)
T PF10165_consen 199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA 278 (446)
T ss_pred CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence 23456777777777772110 00001111334455555542 1 1 2467888889999998
Q ss_pred cCChHHHHHHHH----------------hCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 015687 270 DGTNDKIQAVIE----------------AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 270 ~~~~~~~~~~~~----------------~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~ 315 (402)
.......+.+.. ..+-.+|+.++.+..+.++..+...+-.+|..+.
T Consensus 279 ~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 279 RAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred HhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 776554444422 2355678888888888888888888888875443
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0048 Score=55.79 Aligned_cols=204 Identities=11% Similarity=0.128 Sum_probs=145.5
Q ss_pred HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCc----hhhhhchHHHHHHhc--cCCChhHHHHHHHHHH
Q 015687 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL----FEQTRPALPALERLI--HSNDDEVLTDACWALS 266 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~l~~L~~lL--~~~~~~v~~~a~~~l~ 266 (402)
..+...+.+..|+..| ..-+-+.+..++..+.++.+...... ......--|-++..| ..+++++...+-..|.
T Consensus 70 ~Ei~~~dll~~Li~~L-~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNL-PKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHHTHHHHHHHTG-GGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHh-hhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHH
Confidence 3455667888888888 77788899999999999999873332 222322212222222 2246666666666777
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC---CChHHHHHHhcCCCchhHH
Q 015687 267 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKSIK 343 (402)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~---~~l~~L~~ll~~~~~~~v~ 343 (402)
.++.+ +.....++....+..+..++..++-++...|..++..+.+.........+.. .++.....+|.++ +.-+|
T Consensus 149 ec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtk 226 (335)
T PF08569_consen 149 ECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTK 226 (335)
T ss_dssp HHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHH
T ss_pred HHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEee
Confidence 76655 4456778888899999999999999999999999999888777666666654 4567888899998 99999
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 344 KEACWTISNITAG--NVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 344 ~~a~~~L~nl~~~--~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
+.+...|+.|... +.......+ +..-+..++.+|.+....+|-+|..+.--++...
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 9999999999863 444444444 4556889999999999999999998877666543
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0076 Score=54.21 Aligned_cols=191 Identities=17% Similarity=0.228 Sum_probs=126.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHh---hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcC--C
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI---QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG--T 146 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~---~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~--~ 146 (402)
.+...+..+.......+..++..+.+++... ....++ ...++..+.+.++.+. .+-+..|+.+++-++-. .
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~---~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSR---YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCC
Confidence 3677788888777899999999999998653 222333 2336778888888887 56677787777766543 3
Q ss_pred CcchHHHHhCCchHHHHHhhCCC--CHHHHHHHHHHHHHhhC---CCchhhHHHHhcCChHHHH--HHhcc---------
Q 015687 147 SENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAG---DSPKCRDLVLSNGALMPLL--AQFNE--------- 210 (402)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~---~~~~~~~~~~~~g~i~~L~--~~l~~--------- 210 (402)
......+++ ...|.|.+.+.+. ...+|..++.+|+-++. ..+......++ .+..+. .....
T Consensus 120 g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 120 GEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred CccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccC
Confidence 344555665 5788999988764 45677777777776643 22221111111 222111 11211
Q ss_pred chhhHHHHHHHHHHHHhhhCCCCCch-hhhhchHHHHHHhccCCChhHHHHHHHHHHHhc
Q 015687 211 HAKLSMLRNATWTLSNFCRGKPQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (402)
Q Consensus 211 ~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~ 269 (402)
.+++.+...|+.+++-|...-|.... ......+|.|..+|.++|.+|+..|-.+|+-|.
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 12456888888888877766544322 334778999999999999999999999888775
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0006 Score=67.07 Aligned_cols=188 Identities=19% Similarity=0.171 Sum_probs=129.0
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh-------------hHHHHhcCChHHHHHHhccchhhHHHHHHHHHH
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC-------------RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 224 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-------------~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L 224 (402)
+...|+.+|++ +++-..+..++.-+..|++.. |+.+. ..++|.++..+ ...+...+.+...+|
T Consensus 816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~-~t~~~~~K~~yl~~L 891 (1030)
T KOG1967|consen 816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKF-ETAPGSQKHNYLEAL 891 (1030)
T ss_pred HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHh-ccCCccchhHHHHHH
Confidence 44556666664 344455666666666655432 23332 23677888877 456667788889999
Q ss_pred HHhhhCCCCCc-hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC---hhhH
Q 015687 225 SNFCRGKPQPL-FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---PSVL 300 (402)
Q Consensus 225 ~~l~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~---~~v~ 300 (402)
++...+-|... ......++|.|++.|.-+|..++..++.++.-+....+.....-++ -++|.++.+=.+.+ ..+|
T Consensus 892 shVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 892 SHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHH
Confidence 99888755433 2344778899999999999999999999998877554433222222 35666666655444 5799
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 015687 301 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (402)
Q Consensus 301 ~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 351 (402)
..|+.+++.+....|...-......++..|.+.|+++ +.-||++|+.+=.
T Consensus 971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQ 1020 (1030)
T ss_pred HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhh
Confidence 9999999999985554333344456778899999998 8899999986644
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0068 Score=63.11 Aligned_cols=223 Identities=17% Similarity=0.189 Sum_probs=136.6
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
.|-.|+++-+++-...-+..|+.-++.|+....+..+.... ..||.|.++=.+++..|+..-......|..|+....+.
T Consensus 957 LVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~-kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~ 1035 (1702)
T KOG0915|consen 957 LVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLK-KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDE 1035 (1702)
T ss_pred HHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHH-HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHH
Confidence 46666666665543455777888888888754333333332 47899999888999999977777667777775554444
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch-hhhhchHHHHHHhccCCChhHHHH---HHHHHHHhcc
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF-EQTRPALPALERLIHSNDDEVLTD---ACWALSYLSD 270 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~---a~~~l~~l~~ 270 (402)
... .+++.|+.-+ .+..-.+++.+|.+|..|.++.|.... ..+..+...+...+.+-.+.|+.. ++.+++.++.
T Consensus 1036 y~n-eIl~eLL~~l-t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1036 YLN-EILDELLVNL-TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred HHH-HHHHHHHHhc-cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 433 2666666666 667788999999999999998654332 223444445555554444556554 4566666552
Q ss_pred CChHHHHHHHHhCcHHHHHHhc-----CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhH
Q 015687 271 GTNDKIQAVIEAGVCPRLVELL-----RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI 342 (402)
Q Consensus 271 ~~~~~~~~~~~~~~i~~L~~~L-----~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v 342 (402)
..-+...-.-...++..++++| -+.-+.+|..++.++..++.......... -..++|.|+...+.- .+.+
T Consensus 1114 r~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~-~~~LIp~ll~~~s~l-E~~v 1188 (1702)
T KOG0915|consen 1114 RICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPH-FPKLIPLLLNAYSEL-EPQV 1188 (1702)
T ss_pred hhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcch-hhHHHHHHHHHcccc-chHH
Confidence 1110001011112334444443 24557899999999999987666433322 225677777777665 4443
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.021 Score=48.66 Aligned_cols=224 Identities=18% Similarity=0.273 Sum_probs=143.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhcCCCcchH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
+..+-+....+........+.+|.++- ....+|.|+..|...+ .+.++.+|+.+|+.+.. +
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~------------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---- 99 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQ------------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---- 99 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhc------------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h----
Confidence 444444444444444555566655542 2346899998887543 37889999999999873 2
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCC---------------CchhhHHHHhcCChHHHHHHhccchhhHH
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD---------------SPKCRDLVLSNGALMPLLAQFNEHAKLSM 216 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~---------------~~~~~~~~~~~g~i~~L~~~l~~~~~~~~ 216 (402)
+..+.+-++.+++-..+++.+..++..+--. +|... ...+-+..+-..|.+.+.+..
T Consensus 100 -----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~ 171 (289)
T KOG0567|consen 100 -----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLF 171 (289)
T ss_pred -----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCc---cccccHHHHHHHHHhcchhHH
Confidence 4677888888888888888888888776311 11111 111123334333323322222
Q ss_pred -HHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC--
Q 015687 217 -LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-- 293 (402)
Q Consensus 217 -~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~-- 293 (402)
+..+.+.|.|+-. ...+..+..-+..++.-.+..+..+++.|-.. -.++.|.+.|.
T Consensus 172 ~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~ 230 (289)
T KOG0567|consen 172 ERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDE 230 (289)
T ss_pred HHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccch-----------hhhHHHHHHHHhh
Confidence 3345555555432 25577788888888888899999888877432 23567777764
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 294 ~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
.+.+-+|..|+.+||.++. + ..++.|.+.+.+. .+-|++.+..+|..+-.
T Consensus 231 ~E~pMVRhEaAeALGaIa~--e---------~~~~vL~e~~~D~-~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 231 TEHPMVRHEAAEALGAIAD--E---------DCVEVLKEYLGDE-ERVVRESCEVALDMLEY 280 (289)
T ss_pred hcchHHHHHHHHHHHhhcC--H---------HHHHHHHHHcCCc-HHHHHHHHHHHHHHHHH
Confidence 3467899999999999974 2 3356788888887 88888888887775543
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0088 Score=49.26 Aligned_cols=93 Identities=24% Similarity=0.295 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc
Q 015687 213 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292 (402)
Q Consensus 213 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L 292 (402)
++.++.+++-+++-||...| ..+.+.+|.+...|.++++.|+..|+.++..|...+.-... ..++..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHHH
Confidence 46788999999999997754 34467889999999999999999999999999865432221 22347788888
Q ss_pred CCCChhhHHHHHHHHHHhhcC
Q 015687 293 RHPSPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~ 313 (402)
.++++.++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999876
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0029 Score=59.28 Aligned_cols=130 Identities=15% Similarity=0.233 Sum_probs=95.5
Q ss_pred HHHHhccCCChhHHHHHHHHHHH--hccCChHHHHHHHHhCcHHHHHHh-cCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 015687 245 ALERLIHSNDDEVLTDACWALSY--LSDGTNDKIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCI 321 (402)
Q Consensus 245 ~L~~lL~~~~~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~i~~L~~~-L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i 321 (402)
.+.+++.+.|+-++.....+++. ...+. .|++..++.+ .++.+.+|+..|..+||-+|....
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------ 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------ 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCc---------chhHhhhheeecccCchHHHHHHHHheeeeEecCc------
Confidence 56677777788888777665543 22222 2566777777 677888999999999999987654
Q ss_pred HhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 322 INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 322 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
..++..+++|..++++.||...+.+|+-.|+++..+. .+..|-.++.+...-||+.|+.+++-+....
T Consensus 585 ---~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~ 652 (926)
T COG5116 585 ---DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQC 652 (926)
T ss_pred ---chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhc
Confidence 5677788888777799999999999998888654432 2344555667777889999999988776544
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0044 Score=61.68 Aligned_cols=271 Identities=15% Similarity=0.125 Sum_probs=177.6
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh
Q 015687 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (402)
Q Consensus 113 ~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (402)
....+..-++.++.. +.++..++.-+++++..-.. .....+.++.+.++..+....+++.|...+.++...-..-
T Consensus 236 ~elr~~~~~lc~d~~-~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~- 310 (759)
T KOG0211|consen 236 RELRPIVQSLCQDDT-PMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD- 310 (759)
T ss_pred HHHHHHHHhhccccc-hhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc-
Confidence 334455555666665 88899999999888875332 6667789999999999999999999999999987543211
Q ss_pred HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCC
Q 015687 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~ 272 (402)
+. ....+.+.+++.. .+.+..+........+.++..-.. ........+....++.+...+.+..+..-...++...
T Consensus 311 ~d-~~~~~~~~l~~~~-~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l 386 (759)
T KOG0211|consen 311 DD-VVKSLTESLVQAV-EDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL 386 (759)
T ss_pred hh-hhhhhhHHHHHHh-cChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc
Confidence 01 1223566777777 667777777777777777665322 2222455677777777777777777666555555322
Q ss_pred h-HHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 015687 273 N-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (402)
Q Consensus 273 ~-~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 351 (402)
. +....+....+++.+..+..+.+..++...+..+..+..-.+ ...- -...+|.+...+++. .+.|+....|.++
T Consensus 387 ~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~t-i~~llp~~~~~l~de-~~~V~lnli~~ls 462 (759)
T KOG0211|consen 387 NASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERT-ISELLPLLIGNLKDE-DPIVRLNLIDKLS 462 (759)
T ss_pred CcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcC-ccccChhhhhhcchh-hHHHHHhhHHHHH
Confidence 1 112234455667888888888899999888777777654333 0001 125677788888877 8899999998887
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 352 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 352 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
.+-......-........+|.+..+-.+....++.+..+.+--++
T Consensus 463 ~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la 507 (759)
T KOG0211|consen 463 LLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLA 507 (759)
T ss_pred HHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHH
Confidence 665532222222333446777777766666777777777665554
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.03 Score=57.24 Aligned_cols=220 Identities=11% Similarity=0.121 Sum_probs=140.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc---cchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHH
Q 015687 168 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 244 (402)
Q Consensus 168 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~ 244 (402)
+.+..++..+...|..++...+ ......+ .+..+.+.+. +..+...+...+.+|..|....+......+...+|
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s-~~~~~~q--~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~ 741 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPS-GEGLVEQ--RIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIP 741 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCc-hhhHHHH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3578899999999999987732 2111111 2333333332 44566778888888888887766555556666666
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhC------cHHHHHHhc----CCCChhhHHHHHHHHHHhhcCC
Q 015687 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG------VCPRLVELL----RHPSPSVLIPALRTVGNIVTGD 314 (402)
Q Consensus 245 ~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~------~i~~L~~~L----~~~~~~v~~~a~~~l~nl~~~~ 314 (402)
-++=.+.+.|...+..+..+|..++. ++...+.| .+...+..+ -.+...+....+.+++.+....
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~ 816 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF 816 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 65555577888899999998888873 12222222 333344433 3333333333366666666533
Q ss_pred hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 015687 315 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394 (402)
Q Consensus 315 ~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n 394 (402)
........-.++++.+..+|.+. ++++++.|+..+.-++...|+.+-.--...++|.+..++++..-+++..+-..|-.
T Consensus 817 ~~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek 895 (1176)
T KOG1248|consen 817 KNILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK 895 (1176)
T ss_pred hccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 32222222236677788888888 99999999999999988655543333333489999999988888888887777665
Q ss_pred hh
Q 015687 395 AT 396 (402)
Q Consensus 395 l~ 396 (402)
++
T Consensus 896 Li 897 (1176)
T KOG1248|consen 896 LI 897 (1176)
T ss_pred HH
Confidence 54
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0061 Score=59.50 Aligned_cols=202 Identities=16% Similarity=0.117 Sum_probs=143.1
Q ss_pred hhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCC-hhHHHHHHHHHHHhc
Q 015687 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND-DEVLTDACWALSYLS 269 (402)
Q Consensus 191 ~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~~l~ 269 (402)
-+...++.|+...|+.+. ..+.+........+|. . .-.-........++.+...++... ..-...++.++.||+
T Consensus 496 ~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~--~--~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLa 570 (748)
T KOG4151|consen 496 ERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALA--G--KIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNLA 570 (748)
T ss_pred hcCccccccHHHHHHHHH-HHhchHHHHHHHHHHh--h--hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence 466778899999999998 4455566666666666 1 111111222344555555554332 223467888999999
Q ss_pred cCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC-CChHHHHHHhcCCCchhHHHHHHH
Q 015687 270 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH-QALPCLLDLLTQNYKKSIKKEACW 348 (402)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~-~~l~~L~~ll~~~~~~~v~~~a~~ 348 (402)
..++...+.++..-.++.+-.++..+++..+..++..+.|+..++.-+...+.+. ..++.....+... +......++.
T Consensus 571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~ 649 (748)
T KOG4151|consen 571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAG 649 (748)
T ss_pred CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhccc
Confidence 8777666778887777888888888999999999999999999888777777773 5567777777665 7777777887
Q ss_pred HHHHHhcCCHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 349 TISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 349 ~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
++..|+.-...++.... -......+..++.++++.++...+..+.|+...
T Consensus 650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~ 700 (748)
T KOG4151|consen 650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA 700 (748)
T ss_pred cccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH
Confidence 77777765555555322 245678889999999999999988888885543
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0037 Score=57.45 Aligned_cols=264 Identities=15% Similarity=0.112 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhh-----CCCchhhHHHHhcCChHHH
Q 015687 130 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA-----GDSPKCRDLVLSNGALMPL 204 (402)
Q Consensus 130 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~-----~~~~~~~~~~~~~g~i~~L 204 (402)
.++.+++.+|..++.+-.-.+..++ .....+..-+.+..+.++..+..++..+- .+.|+.-+.-...|.+-.+
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~--~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLM--ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 5777788888777764222222222 23344444556678888888888877664 2333221111122211111
Q ss_pred ------HHHhccchhhHHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHH
Q 015687 205 ------LAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277 (402)
Q Consensus 205 ------~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~ 277 (402)
-....++..+..+...|.+++++.... ..-+-..-...+-.+..+-.+.+.-++..|.+++.-+.-++.-...
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d 427 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD 427 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh
Confidence 112223345667778888888886543 1111100011111222222233444777888888776655554444
Q ss_pred HHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc----CCh---HHHHHHHhCCChHHHHHHhc--CCCchhHHHHHHH
Q 015687 278 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT----GDD---MQTQCIINHQALPCLLDLLT--QNYKKSIKKEACW 348 (402)
Q Consensus 278 ~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~----~~~---~~~~~i~~~~~l~~L~~ll~--~~~~~~v~~~a~~ 348 (402)
...-..+...+...+.+..-..+..+.|++|||.. +.+ .....+.. -.+..++..-. +..+..|+..++.
T Consensus 428 ~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navr 506 (728)
T KOG4535|consen 428 VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVR 506 (728)
T ss_pred HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 44444556667777777777899999999999974 222 12332222 12222332221 2225789999999
Q ss_pred HHHHHhcCCHHHHHHHHHc-------C-CHHHHHHHhccCCHHHHHHHHHHHHHhhcCCC
Q 015687 349 TISNITAGNVNQIQAIIEA-------G-IIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 349 ~L~nl~~~~~~~~~~l~~~-------~-~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
+|+|+..- .+.+.+. | ....+-.....+..+||=+||++++|+..+-+
T Consensus 507 aLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a 562 (728)
T KOG4535|consen 507 ALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA 562 (728)
T ss_pred HHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcc
Confidence 99998642 2222222 1 12222222334678999999999999987653
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.056 Score=51.93 Aligned_cols=176 Identities=15% Similarity=0.140 Sum_probs=105.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHH
Q 015687 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL 196 (402)
Q Consensus 117 ~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 196 (402)
..++...+ ++ ...+..|+..|......-|+..+. ++..++.|.++++..||.+|+..|..+|.+.++....
T Consensus 26 ~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-- 96 (556)
T PF05918_consen 26 KEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-- 96 (556)
T ss_dssp HHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--
T ss_pred HHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--
Confidence 34444444 34 688999999999988877776654 6788999999999999999999999999998765444
Q ss_pred hcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhcc---CCChhHHHHHHHHHHH-hccCC
Q 015687 197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSY-LSDGT 272 (402)
Q Consensus 197 ~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~a~~~l~~-l~~~~ 272 (402)
+.+.|+++| +..++.-...+-.+|..|...+| .+.+..+...+. +.|+.+++.++..|.. +-.-.
T Consensus 97 ---vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 97 ---VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp ---HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred ---HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence 466788888 66777777777788877776643 344444444443 5678889998876643 32211
Q ss_pred hHHHH--HHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 273 NDKIQ--AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 273 ~~~~~--~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
.+... .=.+.-++..+...|.+-...--...+.+|..+-.
T Consensus 166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI 207 (556)
T ss_dssp TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence 11111 11222345566667765443334444555555544
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0093 Score=58.68 Aligned_cols=224 Identities=13% Similarity=0.167 Sum_probs=143.8
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhh
Q 015687 161 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR 240 (402)
Q Consensus 161 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 240 (402)
.-+..+.++-..++-.++..|..++.... ....+...+++...+..+ .+.|+-+.-+|...+..||...| .
T Consensus 731 eai~sl~d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~-------e 801 (982)
T KOG4653|consen 731 EAISSLHDDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYP-------E 801 (982)
T ss_pred HHHHHhcCCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcc-------h
Confidence 33444556677789999999999997553 346777788899999999 78888888999999999997744 4
Q ss_pred chHHHHHH-hccCCC---hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH
Q 015687 241 PALPALER-LIHSND---DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316 (402)
Q Consensus 241 ~~l~~L~~-lL~~~~---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~ 316 (402)
.++|-+.. ..+..+ ++.+-.+-.++.++...-.+......+ -++...+....+++...|..++..+|++|.-.+.
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 55666655 332221 222333334455544332222222222 3455566667777888899999999999976553
Q ss_pred HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHhcc-CCHHHHHHHHHHH
Q 015687 317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLN-AEFEIKKEAAWAI 392 (402)
Q Consensus 317 ~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~-~~~~v~~~a~~aL 392 (402)
+....+. .++..++.+...+..+-+|+.|+..+..+..+.....-.+.. .+....+...... ++..++..|+.++
T Consensus 881 ~vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 881 QVSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred hhhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 3333222 345566666665557899999999999998876655555442 2233444444444 4456777777776
Q ss_pred HHh
Q 015687 393 SNA 395 (402)
Q Consensus 393 ~nl 395 (402)
--+
T Consensus 960 eei 962 (982)
T KOG4653|consen 960 EEI 962 (982)
T ss_pred HHH
Confidence 544
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.042 Score=53.54 Aligned_cols=218 Identities=15% Similarity=0.108 Sum_probs=116.1
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhh
Q 015687 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238 (402)
Q Consensus 159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 238 (402)
|..+..+|.++++.++-.|+.+|.+++.+....+. +...++.++.+.+|..+.-....-|..+.. .....
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~------Aa~~~i~l~~kesdnnvklIvldrl~~l~~----~~~~i 314 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA------AASTYIDLLVKESDNNVKLIVLDRLSELKA----LHEKI 314 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH------HHHHHHHHHHhccCcchhhhhHHHHHHHhh----hhHHH
Confidence 44444555555555555555555555444332211 223344444333333333333333333331 11223
Q ss_pred hhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 015687 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317 (402)
Q Consensus 239 ~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~ 317 (402)
..+.+--++.+|.++|-+++..++.....|+.... +.+-.++...+...--. =...+...|..-++++..++..-++.
T Consensus 315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~ 393 (948)
T KOG1058|consen 315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEV 393 (948)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHH
Confidence 34555567788899999999999988877765432 22111221111111000 01224567888888998888877765
Q ss_pred HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHhh
Q 015687 318 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNAT 396 (402)
Q Consensus 318 ~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~ 396 (402)
.. .+++.++..+.+. ++..-......+.......|.-+.. ++..|++.+.. ...++...|+|.++.-+
T Consensus 394 aa-----tvV~~ll~fisD~-N~~aas~vl~FvrE~iek~p~Lr~~-----ii~~l~~~~~~irS~ki~rgalwi~GeYc 462 (948)
T KOG1058|consen 394 AA-----TVVSLLLDFISDS-NEAAASDVLMFVREAIEKFPNLRAS-----IIEKLLETFPQIRSSKICRGALWILGEYC 462 (948)
T ss_pred HH-----HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhCchHHHH-----HHHHHHHhhhhhcccccchhHHHHHHHHH
Confidence 55 5677899999887 6654444444444333333333322 44455555533 55678888888888766
Q ss_pred cC
Q 015687 397 SG 398 (402)
Q Consensus 397 ~~ 398 (402)
.+
T Consensus 463 e~ 464 (948)
T KOG1058|consen 463 EG 464 (948)
T ss_pred hh
Confidence 54
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.013 Score=57.40 Aligned_cols=248 Identities=15% Similarity=0.079 Sum_probs=164.3
Q ss_pred hhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHH-HhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHH
Q 015687 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG-NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA 220 (402)
Q Consensus 142 l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~-nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a 220 (402)
++.....-+...++.|+...|+.+.....+..+-....+|. .+...+.. ....++++.+.+.+...-.-....
T Consensus 489 ~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~ 562 (748)
T KOG4151|consen 489 LAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEA 562 (748)
T ss_pred HhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHH
Confidence 34334555666788899999999988777777777777777 33222211 122566666666333333334567
Q ss_pred HHHHHHhhhCCCCCchhhh-hchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhcCCCChh
Q 015687 221 TWTLSNFCRGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLRHPSPS 298 (402)
Q Consensus 221 ~~~L~~l~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~L~~~L~~~~~~ 298 (402)
+.++.||+........... ...++.+-.++..+++..+..++..+.||.-++.-....+++ ...++.....+......
T Consensus 563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~ 642 (748)
T KOG4151|consen 563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEK 642 (748)
T ss_pred HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhH
Confidence 7888888877633333333 445555666777888999999999999999776655455555 23455555566666666
Q ss_pred hHHHHHHHHHHhhcCChHHHH-HHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh
Q 015687 299 VLIPALRTVGNIVTGDDMQTQ-CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377 (402)
Q Consensus 299 v~~~a~~~l~nl~~~~~~~~~-~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 377 (402)
...+++.++..|......... ..-.......+..++.+. ++.++......+.|+.....+....++....++.+...-
T Consensus 643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~ 721 (748)
T KOG4151|consen 643 FELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQ 721 (748)
T ss_pred HhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHH
Confidence 777777777766655443333 222336778889999998 999999999999997766777777777777887777765
Q ss_pred ccCCHHHHHHHHHHHHHhh
Q 015687 378 LNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 378 ~~~~~~v~~~a~~aL~nl~ 396 (402)
.-.....+..+.-+|..+.
T Consensus 722 ~~~~a~~~~~~~~~l~~a~ 740 (748)
T KOG4151|consen 722 KLNRAPKREDAAPCLSAAE 740 (748)
T ss_pred HhhhhhhhhhhhhHHHHHH
Confidence 4444555555655555443
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.02 Score=54.01 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=47.4
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 78 AGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 78 ~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
..+.+....+++.+++.++.+.... ....+++ ..+..|-.+|.++. ...|+.|+++|..++-..|+.
T Consensus 271 ~wls~k~emV~lE~Ar~v~~~~~~n---v~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~k 337 (898)
T COG5240 271 SWLSDKFEMVFLEAARAVCALSEEN---VGSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQK 337 (898)
T ss_pred HHhcCcchhhhHHHHHHHHHHHHhc---cCHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCce
Confidence 4555566788888998888874321 1222222 24777888888888 799999999999999866653
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.029 Score=50.47 Aligned_cols=190 Identities=17% Similarity=0.189 Sum_probs=114.2
Q ss_pred HHHHhccchhhHHHHHHHHHHHHhhhCCCCCchh--hhhchHHHHHHhccCCChhHHHHHHHHHHHhccC--ChHHHHHH
Q 015687 204 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE--QTRPALPALERLIHSNDDEVLTDACWALSYLSDG--TNDKIQAV 279 (402)
Q Consensus 204 L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~--~~~~~~~~ 279 (402)
.+..+ .......+..++..+.++........+. ....+++.+.+.++.+..+-+..++.++.-++-. .......+
T Consensus 48 ~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 48 AIDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 33444 3445778888888888888776433332 2255677888888877766666777777766533 22223334
Q ss_pred HHhCcHHHHHHhcCCCC--hhhHHHHHHHHHHhhcC---ChHHHHHHHhCCChHHHH--HHhcCC---------CchhHH
Q 015687 280 IEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTG---DDMQTQCIINHQALPCLL--DLLTQN---------YKKSIK 343 (402)
Q Consensus 280 ~~~~~i~~L~~~L~~~~--~~v~~~a~~~l~nl~~~---~~~~~~~i~~~~~l~~L~--~ll~~~---------~~~~v~ 343 (402)
++ .+.+.|...+.+.. ..+|..++.+|+-++.. ..+.....++ .+..+. ...+.. .++.+.
T Consensus 127 ~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 127 FE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 43 35678888876543 45667777788777542 2222221111 222111 112211 134577
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 344 KEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 344 ~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
..|+.+-+-|... .+..+....+. .+|.|..+|.+.+.+||..|..+|.-|...
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~~~-~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLLEE-ALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 6665444544442 33345544443 689999999999999999999999877543
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.016 Score=47.64 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcC-ChHHHHHH
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG-ALMPLLAQ 207 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g-~i~~L~~~ 207 (402)
+.++..++.+++.++...+.. ++ ..+|.+...|.++++.+|..|+.+|.+|...+. +.-.| .+..++..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~----ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNL----VE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHH----HH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence 788999999999988754432 22 468899999999999999999999999985532 11122 33677777
Q ss_pred hccchhhHHHHHHHHHHHHhhhCC
Q 015687 208 FNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 208 l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
+ .+++++++..|..++..+....
T Consensus 72 l-~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 72 L-VDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHhc
Confidence 7 8889999999999999999873
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.019 Score=52.74 Aligned_cols=175 Identities=14% Similarity=0.199 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHH-hhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHh
Q 015687 171 DDVREQAVWALGN-VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 249 (402)
Q Consensus 171 ~~v~~~a~~~L~n-l~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 249 (402)
.+-+..|+.-|.. ++.++...-...+ ..++..+++.|.++.+...+.-|+..|..+|.+.+..-+....-++..+++.
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 3444555553333 3444333222222 1256677888866688899999999999999997776666666677777777
Q ss_pred ccCCChhHHHHHHHH-HHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChH
Q 015687 250 IHSNDDEVLTDACWA-LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP 328 (402)
Q Consensus 250 L~~~~~~v~~~a~~~-l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~ 328 (402)
-.+.++++...|... +.-++.+.+.. .+.-+..++...+......++..+..++..-+...-..+-..+.|
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP 451 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAP 451 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhh
Confidence 777766665555443 33444554432 133444555457777777888888888875442222223348899
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 329 CLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 329 ~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
.+++-..+. +..||+.|++||..+..
T Consensus 452 ~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 452 CVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 999999999 99999999999998875
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.092 Score=50.52 Aligned_cols=290 Identities=14% Similarity=0.158 Sum_probs=154.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
....++...+. +......|+..+.++...- |... ..++..+++++.+.+ ..+|..|+..|-.+|.+++++..
T Consensus 24 ~y~~il~~~kg-~~k~K~Laaq~I~kffk~F--P~l~----~~Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~~~v~ 95 (556)
T PF05918_consen 24 DYKEILDGVKG-SPKEKRLAAQFIPKFFKHF--PDLQ----EEAINAQLDLCEDED-VQIRKQAIKGLPQLCKDNPEHVS 95 (556)
T ss_dssp HHHHHHHGGGS--HHHHHHHHHHHHHHHCC---GGGH----HHHHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--T-HH
T ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHhhC--hhhH----HHHHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHHHHHh
Confidence 45677777764 6888889999999987532 3222 225889999999998 89999999999999998887776
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc--cchhhHHHHHHHHHHHHhhh
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--EHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~--~~~~~~~~~~a~~~L~~l~~ 229 (402)
. ++..|+++|.++++.-...+-.+|..+...++.. .+..+...+. ...+..++..++.+|..=..
T Consensus 96 k-----vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~ 162 (556)
T PF05918_consen 96 K-----VADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREKLK 162 (556)
T ss_dssp H-----HHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGG
T ss_pred H-----HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHh
Confidence 5 4678999999988888888888888886555432 3445555552 24567788888877653333
Q ss_pred CC-C---CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhcc----CChHHHHHHHHhCcHHHHHHh------cCCC
Q 015687 230 GK-P---QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVEL------LRHP 295 (402)
Q Consensus 230 ~~-~---~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~i~~L~~~------L~~~ 295 (402)
.- + .+......-++..+.+.|.+-..+--.-.+.+|..+-. ......+.++ +.+.+. +...
T Consensus 163 ~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv-----~ii~eQa~Ld~~f~~s 237 (556)
T PF05918_consen 163 PLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELV-----DIIEEQADLDQPFDPS 237 (556)
T ss_dssp GS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHH-----HHHHHHHTTTS---SS
T ss_pred hCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHH-----HHHHHHhccCCCCCCc
Confidence 22 1 11133445556666777765333334444555555543 1233333333 233322 1223
Q ss_pred ChhhHHHHHHHHHH----hhcC--ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHcC
Q 015687 296 SPSVLIPALRTVGN----IVTG--DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN-QIQAIIEAG 368 (402)
Q Consensus 296 ~~~v~~~a~~~l~n----l~~~--~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~ 368 (402)
++......+.|+.. +..+ +.....++.+ .++|.+-.+ .+..+-....+++-++..... ....
T Consensus 238 D~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l-----~e~~kl~lLk~lAE~s~~~~~~d~~~----- 306 (556)
T PF05918_consen 238 DPESIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL-----PEDRKLDLLKLLAELSPFCGAQDARQ----- 306 (556)
T ss_dssp SHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT----------HHHHHHHHHHHHHTT----THHH-----
T ss_pred CHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC-----ChHHHHHHHHHHHHHcCCCCcccHHH-----
Confidence 44433333333322 1111 1223333333 566655555 335677888888888864221 1233
Q ss_pred CHHHHHHHhcc------CCH----HHHHHHHHHHHHhhcC
Q 015687 369 IIGPLVNLLLN------AEF----EIKKEAAWAISNATSG 398 (402)
Q Consensus 369 ~i~~L~~ll~~------~~~----~v~~~a~~aL~nl~~~ 398 (402)
.++.++.+|.. ..+ ...+..+.++.+|+..
T Consensus 307 ~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k 346 (556)
T PF05918_consen 307 LLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARK 346 (556)
T ss_dssp HHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhh
Confidence 34455555421 122 3456667777777654
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.018 Score=54.40 Aligned_cols=207 Identities=17% Similarity=0.174 Sum_probs=130.2
Q ss_pred chHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc----cchhhHHHHHHHHHHHHhhhCCC
Q 015687 158 AVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 158 ~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~----~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
.+..++.+.. ..++..+..++.+++.++.--+.. +.+ + .+++.+...+. ............|+..-|.....
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~-~~l-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD-DDL-D-EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh-hhH-H-HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 4555555443 355777777788777776432111 111 0 12333333331 11244566677787777776542
Q ss_pred CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh--------HHHHHHHHhC----cHHHHHHhcCCCChhhH
Q 015687 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN--------DKIQAVIEAG----VCPRLVELLRHPSPSVL 300 (402)
Q Consensus 233 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~--------~~~~~~~~~~----~i~~L~~~L~~~~~~v~ 300 (402)
. .....+..++.+|.+ +++...+..++..+....+ ..++.+.... ++|.+++.....+...+
T Consensus 267 ~----~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k 340 (415)
T PF12460_consen 267 P----LATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIK 340 (415)
T ss_pred c----hHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhH
Confidence 1 224556667777755 6677778888877765422 2233333433 45666666666666688
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Q 015687 301 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN 375 (402)
Q Consensus 301 ~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ 375 (402)
...+.+++.+..+-|...-.---..++|.+++-|+.+ ++.++..+..+|..+....++.+..-++. ++|.|++
T Consensus 341 ~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~~~~i~~hl~s-LI~~LL~ 413 (415)
T PF12460_consen 341 SNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEAPELISEHLSS-LIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcCHHHHHHHHHH-HHHHHHh
Confidence 8999999999998875433222237899999999888 88999999999999998877766665443 6666654
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0016 Score=47.32 Aligned_cols=91 Identities=18% Similarity=0.167 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC
Q 015687 217 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296 (402)
Q Consensus 217 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~ 296 (402)
+..++++|...+..-+.........++|.++..+.++|..|+..||.+|.+++....+.+-. .=..+++.|..++.+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCc
Confidence 45567777777777655566677899999999999999999999999999998654432211 11357888888899999
Q ss_pred hhhHHHHHHHHHH
Q 015687 297 PSVLIPALRTVGN 309 (402)
Q Consensus 297 ~~v~~~a~~~l~n 309 (402)
+.|+..| ..+-+
T Consensus 82 ~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 82 ENVRSAA-ELLDR 93 (97)
T ss_pred hhHHHHH-HHHHH
Confidence 9988776 44433
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.017 Score=45.67 Aligned_cols=126 Identities=13% Similarity=0.127 Sum_probs=97.3
Q ss_pred hhHHHHhcCChHHHHHHhccchh-----hHHHHHHHHHHHHhhhCCCCCchh-hhhchHHHHHHhccCC--ChhHHHHHH
Q 015687 191 CRDLVLSNGALMPLLAQFNEHAK-----LSMLRNATWTLSNFCRGKPQPLFE-QTRPALPALERLIHSN--DDEVLTDAC 262 (402)
Q Consensus 191 ~~~~~~~~g~i~~L~~~l~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~L~~lL~~~--~~~v~~~a~ 262 (402)
+...+++.|++..|+.++..+.. .++...++.++..|-.+. ..... ....++..++...... |..+...++
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence 45678889999999999965543 477888899999998874 22222 2245666666666443 789999999
Q ss_pred HHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 015687 263 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317 (402)
Q Consensus 263 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~ 317 (402)
..|-++...++...+.+.+.=-++.|+.+|..+++.++..++..+..+....++.
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 9999999888877776666667899999999999999999999998887665533
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.11 Score=50.85 Aligned_cols=210 Identities=18% Similarity=0.130 Sum_probs=108.1
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 236 (402)
..+|.+.+.|++.+.-+|..|+.|+..|-..... .+ ..+-+.+-..|....|+...++|...|...-..
T Consensus 134 pl~p~IracleHrhsYVRrNAilaifsIyk~~~~---L~--pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~E------ 202 (948)
T KOG1058|consen 134 PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---LI--PDAPELIESFLLTEQDPSCKRNAFLMLFTTDPE------ 202 (948)
T ss_pred hhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh---hc--CChHHHHHHHHHhccCchhHHHHHHHHHhcCHH------
Confidence 4677777788888888888888888877544221 11 113333344454566777777777665433221
Q ss_pred hhhhchHHHHHHhc---cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 015687 237 EQTRPALPALERLI---HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 237 ~~~~~~l~~L~~lL---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~ 313 (402)
.++..+...+ .+-++..+...+..+...+-..+... ...+..+..+|.++++.++-.|..++-++...
T Consensus 203 ----rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~ 273 (948)
T KOG1058|consen 203 ----RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND 273 (948)
T ss_pred ----HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcCCchhhhhhcceEEEccCC
Confidence 1222222222 12234444444444444443333221 23456677777776777777776666666543
Q ss_pred ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHH
Q 015687 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 393 (402)
Q Consensus 314 ~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 393 (402)
.. .... ....++.++....+-.++--..--|..+.+.+.... .|++-.++++|..+|.++++.++....
T Consensus 274 p~-alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il-----~~l~mDvLrvLss~dldvr~Ktldi~l 342 (948)
T KOG1058|consen 274 PT-ALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEKIL-----QGLIMDVLRVLSSPDLDVRSKTLDIAL 342 (948)
T ss_pred HH-HHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHH-----HHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 22 1111 122344444332244444444444444443322222 134555666677777777777766666
Q ss_pred Hhhc
Q 015687 394 NATS 397 (402)
Q Consensus 394 nl~~ 397 (402)
.|++
T Consensus 343 dLvs 346 (948)
T KOG1058|consen 343 DLVS 346 (948)
T ss_pred hhhh
Confidence 5554
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.005 Score=62.50 Aligned_cols=163 Identities=18% Similarity=0.153 Sum_probs=121.7
Q ss_pred HHHHHHhhhCC-CCCchhhhhchHHHHHHhcc----CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-C
Q 015687 221 TWTLSNFCRGK-PQPLFEQTRPALPALERLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-H 294 (402)
Q Consensus 221 ~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~-~ 294 (402)
..++..+|... -......+..+.|.+++..+ .+||+++..|.-+|+.+..-+..... .-++.|+..+. +
T Consensus 898 ~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeks 972 (1251)
T KOG0414|consen 898 ADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKS 972 (1251)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcC
Confidence 44455555543 11123344667888888874 45899999999999998765544322 23688899886 8
Q ss_pred CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Q 015687 295 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLV 374 (402)
Q Consensus 295 ~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~ 374 (402)
+++.+|.++.-++|.++..-+...+ -.-+.|...|.+. ++.+|+.|..+|++|...+ .+--.|.++.+.
T Consensus 973 p~p~IRsN~VvalgDlav~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILnd-----miKVKGql~eMA 1041 (1251)
T KOG0414|consen 973 PSPRIRSNLVVALGDLAVRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILND-----MIKVKGQLSEMA 1041 (1251)
T ss_pred CCceeeecchheccchhhhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHH
Confidence 8999999999999999987664333 4456889999888 9999999999999998642 222378999999
Q ss_pred HHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 375 NLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 375 ~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
..+.+++..++.-|-....-|...|
T Consensus 1042 ~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1042 LCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred HHhcCCcHHHHHHHHHHHHHhhhcc
Confidence 9999999999998886666665554
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.059 Score=54.03 Aligned_cols=199 Identities=19% Similarity=0.206 Sum_probs=129.4
Q ss_pred HHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHH--HHHHhccCCCh-h
Q 015687 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP--ALERLIHSNDD-E 256 (402)
Q Consensus 180 ~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~--~L~~lL~~~~~-~ 256 (402)
+|.++..+.+.....+++.|++..+...+......++...+...+.+++...+..........+. .+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 56677888888888999999999999999767788999999999999998864444333322222 34444544444 7
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC
Q 015687 257 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336 (402)
Q Consensus 257 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~ 336 (402)
.-+.++..++.+...+++..... ..+.+...-..++....... .......-+.|.+..++..
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~---------------~r~~~~~~l~e~i~~~~~~~---~~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECV---------------FRNSVNELLVEAISRWLTSE---IRVINDRSFFPRILRILRL 635 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCcccc---------------chHHHHHHHHHHhhccCccc---eeehhhhhcchhHHHHhcc
Confidence 88888888888876544311100 01122233333333332221 1112222222326666666
Q ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHhh
Q 015687 337 NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNAT 396 (402)
Q Consensus 337 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~ 396 (402)
+..+.....|.|++.+++...++....+.+.|+++.+.+.-.. ...+++.++...+.++.
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 5578899999999999999888888888899999888877433 34567777766655543
|
|
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.25 Score=47.42 Aligned_cols=287 Identities=13% Similarity=0.096 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHH
Q 015687 85 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 164 (402)
Q Consensus 85 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 164 (402)
...+..|+..++..+..-.-.++..+ -..--+++......+.|..+...|..++.+....... .. ...+-.
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~~i-----W~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~-~R---~~fF~~ 74 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIEEI-----WYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGL-MR---AEFFRD 74 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHH-----HHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHH-HH---HHHHHH
Confidence 34566677777776653322222222 2223355555544788888999998888764432111 11 111111
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccch--------------------------hhHHHH
Q 015687 165 LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--------------------------KLSMLR 218 (402)
Q Consensus 165 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~--------------------------~~~~~~ 218 (402)
+-....++-...-+.+|..|+.++... ..++.++.+.|...+...- +.....
T Consensus 75 I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 75 ISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred HhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence 223334444556677777777776554 2245666766666652111 223344
Q ss_pred HHHHHHHHhhhCC-CCCchhhhhchHHHHHHhc-cCCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhcC
Q 015687 219 NATWTLSNFCRGK-PQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLR 293 (402)
Q Consensus 219 ~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~~L~ 293 (402)
.....+.|+...+ .......+.+.+..++.+- .+.+++....++..+-.+... +.+... .++..|.....
T Consensus 153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~~ 227 (464)
T PF11864_consen 153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIVN 227 (464)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHhc
Confidence 4555555555554 3333344455555554443 333444444444444333321 222211 12233333322
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-----CchhHHHHHHHHHHHHhcCCHHHHHHHHH-c
Q 015687 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-----YKKSIKKEACWTISNITAGNVNQIQAIIE-A 367 (402)
Q Consensus 294 ~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~ 367 (402)
..+....+-.++.|++...-.+ ..+..|..+|.++ .+..+.+.|+..+..+..+..++...-+. .
T Consensus 228 --~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~ 298 (464)
T PF11864_consen 228 --SVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFS 298 (464)
T ss_pred --ccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceeccc
Confidence 2266778888899988643321 2245677777322 14566778999999888765332222222 2
Q ss_pred --CCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 368 --GIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 368 --~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
-+++.+...++.+++.+-.+.+..+.++.
T Consensus 299 ~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 299 PSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 27889999999888888888888888777
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.16 Score=51.31 Aligned_cols=217 Identities=15% Similarity=0.176 Sum_probs=133.2
Q ss_pred CCchHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc---cchh----hHHHHHHHHH
Q 015687 156 HGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAK----LSMLRNATWT 223 (402)
Q Consensus 156 ~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~---~~~~----~~~~~~a~~~ 223 (402)
.|++..++.++.+ ....+....+..|...+.- +.+|+.+++.|+++.|+..+. .... ..+.+....+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 4788888888865 3455666677777766655 568999999999999999884 2222 4555555555
Q ss_pred HHHhhhCCCCCchh-------------hhhchHHHHHHhccC----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 015687 224 LSNFCRGKPQPLFE-------------QTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 286 (402)
Q Consensus 224 L~~l~~~~~~~~~~-------------~~~~~l~~L~~lL~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 286 (402)
+..+.......... ....-+..+++.+.+ .++.+....+++|-+|+.+..+..+.+++. +.
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~ 272 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FK 272 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HH
Confidence 55444332111110 012335556665544 468899999999999999999887777654 23
Q ss_pred HHHHhc--CCCChhhHHHHHHHHHHhhcCC------hHHHHHHHhCCChHHHHHHhcCCC-------chhH--------H
Q 015687 287 RLVELL--RHPSPSVLIPALRTVGNIVTGD------DMQTQCIINHQALPCLLDLLTQNY-------KKSI--------K 343 (402)
Q Consensus 287 ~L~~~L--~~~~~~v~~~a~~~l~nl~~~~------~~~~~~i~~~~~l~~L~~ll~~~~-------~~~v--------~ 343 (402)
+.+.+= ......--...+.+++.++.+- ....+.+++.|++...+..|.... +++. -
T Consensus 273 p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL 352 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL 352 (802)
T ss_pred HhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence 333321 1111111123366666666543 356778889999998888885441 1222 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Q 015687 344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNL 376 (402)
Q Consensus 344 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l 376 (402)
..+...|.-++.++.. .+.++..++++.+-.+
T Consensus 353 p~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~L 384 (802)
T PF13764_consen 353 PYILRLLRGLARGHEP-TQLLIAEQLLPLLHRL 384 (802)
T ss_pred HHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHh
Confidence 4567777778776544 4455667777544444
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.034 Score=54.02 Aligned_cols=158 Identities=22% Similarity=0.151 Sum_probs=105.1
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 236 (402)
++=+.+-.++.+.++-+|...+.+++- +..... ..++|..|+..--++.+.++++.|.-+|.-+|..+|
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~al-Ay~GTg------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp---- 587 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLAL-AYVGTG------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP---- 587 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHH-HHhccC------chhhHHHhhcccccccchHHHHHHHHHheeeEecCh----
Confidence 344555667888888888888877763 322221 223566667664467889999999999998887754
Q ss_pred hhhhchHHHHHHhc-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 015687 237 EQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 237 ~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~ 315 (402)
..+|..+.+| .+.++-|+..++.+|+-.|.+..... ++..|-++.+++..-||..|+.+++-+.....
T Consensus 588 ----~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 588 ----EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred ----hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 3456666676 45689999999999998886654331 24555566667778899999999988875332
Q ss_pred HHHHHHHhCCChHHHHHHhcCC
Q 015687 316 MQTQCIINHQALPCLLDLLTQN 337 (402)
Q Consensus 316 ~~~~~i~~~~~l~~L~~ll~~~ 337 (402)
++...-. .++...+.+++.+.
T Consensus 657 ~~~~pkv-~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 657 EQLCPKV-NGFRKQLEKVINDK 677 (929)
T ss_pred cccCchH-HHHHHHHHHHhhhh
Confidence 2211111 14455666666555
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.017 Score=45.71 Aligned_cols=125 Identities=13% Similarity=0.119 Sum_probs=99.2
Q ss_pred hhHHhhcCcHHHHHHhhcCCCC-----HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC--CCHHHHHHHHH
Q 015687 107 INEVIQSGVVPRFIEFLSRDDF-----PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVW 179 (402)
Q Consensus 107 ~~~~~~~g~i~~L~~lL~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~ 179 (402)
..+++..|++..|++++.++.. .++...++.++..+..+..-.- ..++...|...+.+.+. .+..+.+.|+.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 4578889999999999988762 3677788889988888643223 34555677788887775 36889999999
Q ss_pred HHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCC
Q 015687 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233 (402)
Q Consensus 180 ~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 233 (402)
.|-++...++.....+.+.=-++.|+.+| +.++++++.++...+-.|....+.
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hL-q~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHL-QVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99999999887677777766799999999 778999999999988888877543
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.036 Score=54.20 Aligned_cols=259 Identities=16% Similarity=0.151 Sum_probs=132.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH-
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV- 152 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~- 152 (402)
+-+=.++.+........|+.++..+-. ...+.+.. .+..|--+++++. ..+|+.|.++|..+|...|.....
T Consensus 248 ~fl~s~l~~K~emV~~EaArai~~l~~----~~~r~l~p--avs~Lq~flssp~-~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 248 PFLESCLRHKSEMVIYEAARAIVSLPN----TNSRELAP--AVSVLQLFLSSPK-VALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccc----cCHhhcch--HHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhCCcccccc
Confidence 444456777788899999998888732 22333322 5777888888888 899999999999999765543211
Q ss_pred ------HHh-C---CchHHHHHhhCCCCHH----HHHHHHHHHHHhhCCCch-----hhHHH-----HhcCChHHHHHHh
Q 015687 153 ------VID-H---GAVPIFVRLLSSPTDD----VREQAVWALGNVAGDSPK-----CRDLV-----LSNGALMPLLAQF 208 (402)
Q Consensus 153 ------~~~-~---g~i~~L~~lL~~~~~~----v~~~a~~~L~nl~~~~~~-----~~~~~-----~~~g~i~~L~~~l 208 (402)
++. . =....+..+|+..... +..+.....++++.+... .+..+ ...+.+..|.++|
T Consensus 321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L 400 (865)
T KOG1078|consen 321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML 400 (865)
T ss_pred chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 111 0 0122333344333222 222333333333222110 00000 0112233344444
Q ss_pred ccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 015687 209 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 288 (402)
Q Consensus 209 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L 288 (402)
.+...-+..+....++..+....|.... .++..|...+. |-+....+...|.-+....+.. ......+..+
T Consensus 401 r~eGg~e~K~aivd~Ii~iie~~pdsKe----~~L~~LCefIE--Dce~~~i~~rILhlLG~EgP~a---~~Pskyir~i 471 (865)
T KOG1078|consen 401 REEGGFEFKRAIVDAIIDIIEENPDSKE----RGLEHLCEFIE--DCEFTQIAVRILHLLGKEGPKA---PNPSKYIRFI 471 (865)
T ss_pred HhccCchHHHHHHHHHHHHHHhCcchhh----HHHHHHHHHHH--hccchHHHHHHHHHHhccCCCC---CCcchhhHHH
Confidence 3434444455555555555444332221 12222333221 1122223333333333211100 0001123333
Q ss_pred HHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 015687 289 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (402)
Q Consensus 289 ~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 354 (402)
...+--++..+|..|..++.++..+.+... ..+...+.+.+.+. +.++|..|.+.|.++-
T Consensus 472 yNRviLEn~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~-DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 472 YNRVILENAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDS-DDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCc-hHHHHHHHHHHHHHhh
Confidence 333334577789999999999986554222 24445667788888 9999999999999887
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0014 Score=48.96 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=61.1
Q ss_pred CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 325 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
.++..|+++|..+.++.+..-||.=|+.++...|..+..+-+.|+-..+++++.++|++|+.+|+.++..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4577899999555488899999999999999778877777788999999999999999999999999988764
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.04 Score=46.39 Aligned_cols=144 Identities=13% Similarity=0.167 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC----CCHHHHHHHHHHHHHhhcCCC-cchHHHHhCCch
Q 015687 85 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD----DFPQLQFEAAWALTNIASGTS-ENTRVVIDHGAV 159 (402)
Q Consensus 85 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~----~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i 159 (402)
+.-...|+..|..++|. ++....+.+..+=-.|..+|... .++-++..++.+++.+...++ +....+...++|
T Consensus 93 snRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV 170 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV 170 (293)
T ss_pred cchHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence 44555677777777663 46667788887666667777543 247899999999999987543 455667788999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhc-------CChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN-------GALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~-------g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
|..++.++.+++.-+..|..++..+..++.+..-.+... -.+..++..+.+.++..+..++..+..+|+.+
T Consensus 171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999988776542222111 13444455555667888899999999998876
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.062 Score=48.33 Aligned_cols=170 Identities=16% Similarity=0.082 Sum_probs=115.5
Q ss_pred CchHHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCc
Q 015687 157 GAVPIFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235 (402)
Q Consensus 157 g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 235 (402)
+.++.|+ ..+.++++.+|+.++.+||-.|--+..... ..++.+...+ +..+..++..++.++..+....+...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~-~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQAL-QKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4555555 577889999999999999998866543222 2466677777 55688999999999988876542211
Q ss_pred h---------hhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC----CCChhhHHH
Q 015687 236 F---------EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR----HPSPSVLIP 302 (402)
Q Consensus 236 ~---------~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~----~~~~~v~~~ 302 (402)
+ .....++..+.+.+.+.+++++..++..++.|.-...-.- ...++..|+-..- .++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 1 1224678888899999999999999999999763322111 1233444444432 234567777
Q ss_pred HHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC
Q 015687 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 337 (402)
Q Consensus 303 a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~ 337 (402)
-...+-..+...+.. +..+...++|.+..+....
T Consensus 176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 777777888776654 4566668888888888665
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.2 Score=49.00 Aligned_cols=278 Identities=17% Similarity=0.138 Sum_probs=161.3
Q ss_pred cCcHHHHHHhhcCC-------CCHHHHHHHHHHHHHhhc--CCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHH
Q 015687 113 SGVVPRFIEFLSRD-------DFPQLQFEAAWALTNIAS--GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 183 (402)
Q Consensus 113 ~g~i~~L~~lL~~~-------~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n 183 (402)
.|+++.++..|... +++.-.+.|++.+.++.+ ..+.....+.+.-+++.++..++++.--++..||..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 57899999998421 123445667777777665 334444555555677888888888888899999999999
Q ss_pred hhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch---hhhhchHHHHHHhccCCChhHHHH
Q 015687 184 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF---EQTRPALPALERLIHSNDDEVLTD 260 (402)
Q Consensus 184 l~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~~l~~L~~lL~~~~~~v~~~ 260 (402)
+..+ .++..+-..+.+...+++ ++.+-.++-.|+-++..+..+. .... ..+.+.++.|+.+-+.-+.++...
T Consensus 487 ~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~-q~h~k~sahVp~tmekLLsLSn~feiD~LS~ 561 (970)
T COG5656 487 IEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE-QSHEKFSAHVPETMEKLLSLSNTFEIDPLSM 561 (970)
T ss_pred HHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch-hhhHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence 9544 333434444677777888 5578888999999999888875 1111 222344444444444445566665
Q ss_pred HHHHH-HHhccCChHHHHHHHHh---CcHHHHHHhcCCCC------hhhHHHHHHHHHHhhc------CChHHHHHHHhC
Q 015687 261 ACWAL-SYLSDGTNDKIQAVIEA---GVCPRLVELLRHPS------PSVLIPALRTVGNIVT------GDDMQTQCIINH 324 (402)
Q Consensus 261 a~~~l-~~l~~~~~~~~~~~~~~---~~i~~L~~~L~~~~------~~v~~~a~~~l~nl~~------~~~~~~~~i~~~ 324 (402)
+...+ .+.+..-......+... ..+.....++.+++ ++-+..|.+.|..+.+ ..+...+ -+..
T Consensus 562 vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk-~le~ 640 (970)
T COG5656 562 VMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLK-YLEV 640 (970)
T ss_pred HHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHH-HHHH
Confidence 55443 33332211111112111 12223333333221 1223344444433322 1122222 2334
Q ss_pred CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCH-HHHHHHHHHHHHhhcCC
Q 015687 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF-EIKKEAAWAISNATSGG 399 (402)
Q Consensus 325 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-~v~~~a~~aL~nl~~~~ 399 (402)
...|.+-=++.+. ..++-.+|+-.+-+.+--..+ +. -+.-|+.+.+.+++.+... .--.++.-++.|+...|
T Consensus 641 slypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I~-pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG 713 (970)
T COG5656 641 SLYPVISFILKNE-ISDFYQEALDILDGYTFMSKE-IE-PIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYG 713 (970)
T ss_pred HHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-hh-hhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhC
Confidence 6677777777777 777888888888776643222 22 1223556666666666553 67788999999998877
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.014 Score=59.37 Aligned_cols=159 Identities=21% Similarity=0.249 Sum_probs=118.6
Q ss_pred cHHHHHHhhcC----CCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCc
Q 015687 115 VVPRFIEFLSR----DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSP 189 (402)
Q Consensus 115 ~i~~L~~lL~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~ 189 (402)
+.|.+++.++. ++ |++|..|.-+|+.+..-+.++.. ..+|.|+..++ ++++.+|..++-++|-++..-|
T Consensus 920 f~piv~e~c~n~~~~sd-p~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSD-PELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHhcCCCcCCC-HHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 57888888854 45 89999999999998876555443 35899999888 7999999999999999987766
Q ss_pred hhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhc
Q 015687 190 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (402)
Q Consensus 190 ~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~ 269 (402)
..-+. .-+.|...+ .+.++.++++|..++++|... ....+.|.++.+..+|.++++.|..-|=..+..|+
T Consensus 994 nlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 994 NLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred cccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 54222 345566666 788999999999999999866 34566899999999999999998877765666666
Q ss_pred cCChHHHHHHHHhCcHHHHHHhcCCC
Q 015687 270 DGTNDKIQAVIEAGVCPRLVELLRHP 295 (402)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~L~~~L~~~ 295 (402)
...+..+ +++|-++..|++.
T Consensus 1064 ~k~n~iy------nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1064 SKGNTIY------NLLPDILSRLSNG 1083 (1251)
T ss_pred hcccchh------hhchHHHHhhccC
Confidence 4443222 2345555555443
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0015 Score=36.35 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=26.5
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 369 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
++|.+++++++++++||..|+++|+.++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 378999999999999999999999999864
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.045 Score=54.10 Aligned_cols=225 Identities=13% Similarity=0.102 Sum_probs=145.8
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHh
Q 015687 118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 197 (402)
Q Consensus 118 ~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 197 (402)
.-+..+.++. ..++-.++.-|..+.... +....+...+++...+..|.+.++-+--.|+..+..||.-.|+
T Consensus 731 eai~sl~d~q-vpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e------- 801 (982)
T KOG4653|consen 731 EAISSLHDDQ-VPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE------- 801 (982)
T ss_pred HHHHHhcCCc-ccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-------
Confidence 3344455555 678899999999999853 5556666678999999999999999998999988888755332
Q ss_pred cCChHHHHHHhccc---hhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChH
Q 015687 198 NGALMPLLAQFNEH---AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (402)
Q Consensus 198 ~g~i~~L~~~l~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~ 274 (402)
.+++.+...-... ..++.+-.+-.++.++...-......+...++..++...+++|...+..++..+++++.....
T Consensus 802 -~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 802 -DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred -hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 3566666643221 113444445577777776654444555567777888888888888899999999999854332
Q ss_pred HHHHHHHhCcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHhC---CChHHHHHHhcCCCchhHHHHHHHHH
Q 015687 275 KIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKSIKKEACWTI 350 (402)
Q Consensus 275 ~~~~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~---~~l~~L~~ll~~~~~~~v~~~a~~~L 350 (402)
.....+ ..++..++.+.. +++.-+|..|+..+..+..+.....-.+... .....+........+..++..|+.++
T Consensus 881 ~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 881 QVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred hhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 222111 123445555543 4567899999999999988776444333322 22333333343332555666666655
Q ss_pred HHH
Q 015687 351 SNI 353 (402)
Q Consensus 351 ~nl 353 (402)
--+
T Consensus 960 eei 962 (982)
T KOG4653|consen 960 EEI 962 (982)
T ss_pred HHH
Confidence 433
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.24 Score=41.96 Aligned_cols=177 Identities=14% Similarity=0.106 Sum_probs=111.7
Q ss_pred HHHHHHHHHhhhCCCCCchhhhhchHH-HHHHhccC-----CChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHH
Q 015687 218 RNATWTLSNFCRGKPQPLFEQTRPALP-ALERLIHS-----NDDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVE 290 (402)
Q Consensus 218 ~~a~~~L~~l~~~~~~~~~~~~~~~l~-~L~~lL~~-----~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~ 290 (402)
.++...|-.++.+ |.....+...-+| .+.++|.. +.+..+-.++..++.+...+ .+.+..+...+++|.++.
T Consensus 97 cnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 97 CNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 3444444444444 5554455444444 34455533 35778999999999998654 466777889999999999
Q ss_pred hcCCCChhhHHHHHHHHHHhhcCChH--HHH----H--HHhCCChHH-HHHHhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 015687 291 LLRHPSPSVLIPALRTVGNIVTGDDM--QTQ----C--IINHQALPC-LLDLLTQNYKKSIKKEACWTISNITAGNVNQI 361 (402)
Q Consensus 291 ~L~~~~~~v~~~a~~~l~nl~~~~~~--~~~----~--i~~~~~l~~-L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~ 361 (402)
.+..+++.-+.-|..+++.|...+.. ++- . .+. -++.. +.++.+.+ ++.+-+.++.+..+++.. +..+
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~-~~L~kmv~~l~~~p-s~RllKhviRcYlrLsdn-prar 252 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVA-LVLGKMVFQLVSMP-SPRLLKHVIRCYLRLSDN-PRAR 252 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCC-HHHH
Confidence 99999998999999999999865431 111 1 111 22333 34444555 888999999999999875 5544
Q ss_pred HHHHH---cCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 362 QAIIE---AGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 362 ~~l~~---~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
..+-. .++-..-...+-.+|+..+.--...+.|+..+
T Consensus 253 ~aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~~~ 292 (293)
T KOG3036|consen 253 AALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLCTG 292 (293)
T ss_pred HHHHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhccC
Confidence 44432 12222222333346666776666677777654
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0027 Score=47.46 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=61.4
Q ss_pred hchHHHHHHhc-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 240 RPALPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 240 ~~~l~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
..++..|+.+| .+.|+.+..-||.-|+.++...+.....+-+.|+-..+..++.++++.|+..|+.++..+..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45677888998 45588889999999999998777777777788999999999999999999999999988764
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.052 Score=50.07 Aligned_cols=184 Identities=14% Similarity=0.107 Sum_probs=118.7
Q ss_pred HHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 73 LPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 73 i~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
+..++..+.+. ..+.+..|+..|..++..+ ...+-.-.-..++..+++.|.+..++..+..|+++|..++...+.
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~-sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~--- 363 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEG-SFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA--- 363 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH---
Confidence 34455555543 4677778888899887754 333322122236777888888844378999999999999986432
Q ss_pred HHHhC--CchHHHHHhhCCCCHHHHHHHHH-HHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhh
Q 015687 152 VVIDH--GAVPIFVRLLSSPTDDVREQAVW-ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 152 ~~~~~--g~i~~L~~lL~~~~~~v~~~a~~-~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~ 228 (402)
.+.+. -+|..++..-.+..+++...|.. ++.-++...|.. .|..+..++ ...|.+....++..+..++
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~I-lt~D~~~~~~~iKm~Tkl~ 434 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLI-LTADEPRAVAVIKMLTKLF 434 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHH-hcCcchHHHHHHHHHHHHH
Confidence 23332 24556666556665555545544 455566666632 233344444 3356666666777778888
Q ss_pred hCCCCCch-hhhhchHHHHHHhccCCChhHHHHHHHHHHHhc
Q 015687 229 RGKPQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (402)
Q Consensus 229 ~~~~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~ 269 (402)
..-+.... ..+..+.|.+++...+....|+..++.+|..+.
T Consensus 435 e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 435 ERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 76533322 344788899999999999999999999998875
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.012 Score=50.33 Aligned_cols=142 Identities=11% Similarity=0.155 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC----CHHHHHHHHHHHHHhhcC-CCcchHHHHhCCchHHH
Q 015687 88 QLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD----FPQLQFEAAWALTNIASG-TSENTRVVIDHGAVPIF 162 (402)
Q Consensus 88 ~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~----~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L 162 (402)
.-.|+..|..+++ .++....++++.+.-.|..+|+..+ .+.++..++.+++.+... +++....+.+.+++|..
T Consensus 67 VcnaLaLlQ~vAs--hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplc 144 (262)
T PF04078_consen 67 VCNALALLQCVAS--HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLC 144 (262)
T ss_dssp HHHHHHHHHHHHH---TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHc--ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHH
Confidence 3445566666666 3577788999998888888887643 367889999999999873 35667778889999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCCchhhH------HHH-hcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 163 VRLLSSPTDDVREQAVWALGNVAGDSPKCRD------LVL-SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 163 ~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~------~~~-~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
++.++.++.-.+..|...+..+..++.+..- .+. -..++..++..+...+++.+.+++..+...|+.+.
T Consensus 145 Lr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 145 LRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 9999999888899999999888766543321 111 11245566666667788999999999999999883
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.011 Score=58.52 Aligned_cols=153 Identities=18% Similarity=0.202 Sum_probs=112.3
Q ss_pred hhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHH--hCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH
Q 015687 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316 (402)
Q Consensus 239 ~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~ 316 (402)
...++|.+++.+++.+...+..-+.+|+++..+-+. +.+.. ..++|.|++.|+-++..++..++.+|.-+......
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 367889999999877888888888889888766553 22322 25788888999999999999999999988875543
Q ss_pred HHHHHHhCCChHHHHHHhcCCCc---hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHH
Q 015687 317 QTQCIINHQALPCLLDLLTQNYK---KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 393 (402)
Q Consensus 317 ~~~~i~~~~~l~~L~~ll~~~~~---~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 393 (402)
....-++ .++|.++.+-.+. + ..+|..|..+|..|+..-|...-......++..|...|.++-..||++|..+=.
T Consensus 943 L~t~~~~-Tlvp~lLsls~~~-~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 943 LQTEHLS-TLVPYLLSLSSDN-DNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred cchHHHh-HHHHHHHhcCCCC-CcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 3222222 5678888777666 4 578999999999999843333222333458888999998888889999987754
Q ss_pred Hh
Q 015687 394 NA 395 (402)
Q Consensus 394 nl 395 (402)
+-
T Consensus 1021 ~W 1022 (1030)
T KOG1967|consen 1021 NW 1022 (1030)
T ss_pred hh
Confidence 43
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.29 Score=49.44 Aligned_cols=264 Identities=14% Similarity=0.114 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHHHHhccC-CCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHH
Q 015687 84 DRNIQLDATTQFRKLLSIE-RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF 162 (402)
Q Consensus 84 ~~~~~~~a~~~l~~l~s~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 162 (402)
++.....|+..+..+.+.= +..+.+...+.=+++.+...++++- -.+|..|+|+++.+++.. ......-..++...
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~d--f~d~~~l~~ale~t 507 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSID--FKDPNNLSEALELT 507 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhcc--CCChHHHHHHHHHH
Confidence 3445555666555554321 2344444444445566666677776 789999999999999632 22222222466666
Q ss_pred HHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhc--CChHHHHHHhccchhhHHHHHHHHHH-HHhhhCCCCCchhh
Q 015687 163 VRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSN--GALMPLLAQFNEHAKLSMLRNATWTL-SNFCRGKPQPLFEQ 238 (402)
Q Consensus 163 ~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~--g~i~~L~~~l~~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~ 238 (402)
...|. +.+-.|+-.|+-||..+..+.+.....+..+ +.++.|+.+. +..+.+....++..+ +..+..-..-....
T Consensus 508 ~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~-ne~End~Lt~vme~iV~~fseElsPfA~eL 586 (1010)
T KOG1991|consen 508 HNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS-NEVENDDLTNVMEKIVCKFSEELSPFAVEL 586 (1010)
T ss_pred HHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHhhchhHHHH
Confidence 67666 7778899999999999987766443323221 1233344444 222333333333322 23333222222333
Q ss_pred hhchHHHHHHhccC---C---ChhHHHHHHHHHHHh---cc---CChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHH
Q 015687 239 TRPALPALERLIHS---N---DDEVLTDACWALSYL---SD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306 (402)
Q Consensus 239 ~~~~l~~L~~lL~~---~---~~~v~~~a~~~l~~l---~~---~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~ 306 (402)
...+...+.+++.. . +.+=...|.++|..+ .. ..++..+ -++.-+++.+-.+|.+.-.++-+.++..
T Consensus 587 ~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~i~dfyeE~~ei 665 (1010)
T KOG1991|consen 587 CQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLPVIGFILKNDITDFYEELLEI 665 (1010)
T ss_pred HHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45666677777763 1 122222333333322 21 1222221 2233445555556666666777778777
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 307 l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
+..++...++..-.+ -|+++.+.+.+... ...--....-.|.|+..
T Consensus 666 ~~~~t~~~~~Isp~m--W~ll~li~e~~~~~-~~dyf~d~~~~l~N~vt 711 (1010)
T KOG1991|consen 666 VSSLTFLSKEISPIM--WGLLELILEVFQDD-GIDYFTDMMPALHNYVT 711 (1010)
T ss_pred HhhhhhhhcccCHHH--HHHHHHHHHHHhhh-hHHHHHHHHHHHhhhee
Confidence 777766543221111 14555566655554 44444455555555553
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.039 Score=57.78 Aligned_cols=166 Identities=16% Similarity=0.122 Sum_probs=113.9
Q ss_pred HHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC
Q 015687 217 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296 (402)
Q Consensus 217 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~ 296 (402)
..++.|+...++...+ -.....+++..++..|..+...++..|+.||+.+...++.. +....+-..+-.-+.+..
T Consensus 794 ~~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dss 868 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSS 868 (1692)
T ss_pred chhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccch
Confidence 4456666666665421 11223567777888888888999999999999999776632 333334444555566778
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Q 015687 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL 376 (402)
Q Consensus 297 ~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l 376 (402)
..||+.|+..+|..+...++..... ...+..-+.++ .-.||+.+...+..+|...|+. ..+.+ +...++.-
T Consensus 869 asVREAaldLvGrfvl~~~e~~~qy-----Y~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf-~~i~~--~cakmlrR 939 (1692)
T KOG1020|consen 869 ASVREAALDLVGRFVLSIPELIFQY-----YDQIIERILDT-GVSVRKRVIKILRDICEETPDF-SKIVD--MCAKMLRR 939 (1692)
T ss_pred hHHHHHHHHHHhhhhhccHHHHHHH-----HHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCCh-hhHHH--HHHHHHHH
Confidence 8999999999999998877665533 34566666666 7889999999999999866553 22211 23344444
Q ss_pred hccCCHHHHHHHHHHHHHhh
Q 015687 377 LLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 377 l~~~~~~v~~~a~~aL~nl~ 396 (402)
.++++..+++-++.++.++.
T Consensus 940 v~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 940 VNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred hccchhHHHHHHHHHHHHHh
Confidence 45555558888888887764
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0024 Score=35.46 Aligned_cols=29 Identities=38% Similarity=0.705 Sum_probs=25.8
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAG 186 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~ 186 (402)
++|.++++++++++++|..|+++|+.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999874
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.02 Score=38.89 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 015687 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 367 (402)
Q Consensus 300 ~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 367 (402)
.+.|+|++|++++. +.....+.+.++++.++++..+.+...+|-.|.++|+-++.. .+..+.+-+.
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~ 69 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDEL 69 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHc
Confidence 56899999999884 445666667899999999998775789999999999988764 5545544443
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.089 Score=45.15 Aligned_cols=145 Identities=13% Similarity=0.113 Sum_probs=100.9
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHh-------cCCCC--h---hhHHHHHHHHHHhhcCChHHHH
Q 015687 253 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVEL-------LRHPS--P---SVLIPALRTVGNIVTGDDMQTQ 319 (402)
Q Consensus 253 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~~-------L~~~~--~---~v~~~a~~~l~nl~~~~~~~~~ 319 (402)
.+++.++.|+.-|+.--+..++....+..+ |.+..|++= +..+. . .-...|+..+..++++ ++.+.
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~ 85 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRM 85 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHH
Confidence 366778888888877666555555555554 555554332 23332 1 2334566666677774 55777
Q ss_pred HHHhCCChHHHHHHhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 015687 320 CIINHQALPCLLDLLTQNY----KKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394 (402)
Q Consensus 320 ~i~~~~~l~~L~~ll~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n 394 (402)
.++++++.-.|..+|+... -+.+|-.+..+++.+.. ++++.+..+++.+++|..++.++.++.-.+..|...+..
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7999988888888886541 25688899999999997 688999999999999999999999999999999999888
Q ss_pred hhcC
Q 015687 395 ATSG 398 (402)
Q Consensus 395 l~~~ 398 (402)
+..+
T Consensus 166 IL~d 169 (262)
T PF04078_consen 166 ILLD 169 (262)
T ss_dssp HHHS
T ss_pred HHcc
Confidence 7643
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.19 Score=43.47 Aligned_cols=103 Identities=13% Similarity=0.066 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHH
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 207 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~ 207 (402)
+.....|+.+|..++--.+..+..+.....+..|+.+|+ ...+.++..++.+|..+..++|.+...+-+.+++..++.+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 345566888998888888999999999999999999995 4678999999999999999999998999999999999999
Q ss_pred hcc-chhhHHHHHHHHHHHHhhhCC
Q 015687 208 FNE-HAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 208 l~~-~~~~~~~~~a~~~L~~l~~~~ 231 (402)
++. +.+.+++-.+..+|.-.....
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHccc
Confidence 964 346778777887777665544
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.013 Score=48.65 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=78.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC--------CCHHHHHHHHHHHHHhh
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD--------DFPQLQFEAAWALTNIA 143 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~--------~~~~~~~~a~~~L~~l~ 143 (402)
....+++.+.+..... ..+..|+..+......-++.|++.|++..|+++|..- .+...+.+++.||..|.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3456778887765432 4455555555543223367888999999999988631 22578999999999999
Q ss_pred cCCCcchHHHHh-CCchHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015687 144 SGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVA 185 (402)
Q Consensus 144 ~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 185 (402)
.. ......+++ .+++..++..|.+++..++..++..|..+|
T Consensus 145 n~-~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NT-KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SS-HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cc-HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 75 444555554 689999999999999999999999999886
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.15 Score=47.38 Aligned_cols=144 Identities=14% Similarity=0.208 Sum_probs=106.2
Q ss_pred CCchhHHhh-cCcHHHHHHhhcCCC--CHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhC-C---CCHHHHHH
Q 015687 104 SPPINEVIQ-SGVVPRFIEFLSRDD--FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-S---PTDDVREQ 176 (402)
Q Consensus 104 ~~~~~~~~~-~g~i~~L~~lL~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~---~~~~v~~~ 176 (402)
....+.+++ +.+...|..++++.. -+.+-..|+.++..+....|..-..+.+.|+++.++..+. . ++.++...
T Consensus 95 ~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~ 174 (379)
T PF06025_consen 95 GDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTS 174 (379)
T ss_pred ccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHH
Confidence 334455667 666777777887754 2678889999999999988999999999999999999877 4 67888888
Q ss_pred HHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhh------HHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHH
Q 015687 177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL------SMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 248 (402)
Q Consensus 177 a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ 248 (402)
.-.+|+.||-+... .+.+.+.+.++.+++++.+.... +.....-..+-.|.++.|.-....+..++..+-+
T Consensus 175 lP~~l~AicLN~~G-l~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~ 251 (379)
T PF06025_consen 175 LPNVLSAICLNNRG-LEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDR 251 (379)
T ss_pred HHHHHhHHhcCHHH-HHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 88899999988775 57778889999999998433222 4455566677788888765555444444444433
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.016 Score=52.11 Aligned_cols=112 Identities=16% Similarity=0.223 Sum_probs=86.5
Q ss_pred CcHHHH-HHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHH
Q 015687 283 GVCPRL-VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQ 360 (402)
Q Consensus 283 ~~i~~L-~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~ 360 (402)
++++.+ .+.+.+.++.+|..|+.++|-.+--+..... ..++.+...++.+ ++.++..|+.++..+.. +..+.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence 344444 4778899999999999999999987664444 3466788888777 89999999999998886 33333
Q ss_pred HHHHHH-------cCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCCC
Q 015687 361 IQAIIE-------AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 361 ~~~l~~-------~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
...... ..++..+.+.+.+.+++++..|+..++.|.-.|.
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~ 146 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR 146 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence 333222 4578888999999999999999999999887764
|
|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.92 Score=49.92 Aligned_cols=315 Identities=16% Similarity=0.100 Sum_probs=169.6
Q ss_pred HHHHHHhhcC--CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 73 LPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 73 i~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+..+++.+.. ++.+-+ .++..|...++.+ ....+.+-..|+...|-.+-+-++++..+..+...-..++.+ +..+
T Consensus 165 ~~lllNafSKw~~~~~c~-~aa~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~ 241 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQ-AVAPRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLR 241 (2710)
T ss_pred HHHHHHHhhcCCCCchHH-HHHHHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHH
Confidence 4566666653 334444 3445555554443 334444544454444444555566466555444444445553 4444
Q ss_pred HHHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 151 RVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
..+-..| +-..+..|+ =++.....+++.+|..=..+.+..+..+ +...+...++-|.+.++..+-..++..|..=..
T Consensus 242 ~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~ 319 (2710)
T PRK14707 242 NELKPQE-LGNALNALSKWADTPVCAAAASALAERLVDDPGLRKAL-DPINVTQALNALSKWADLPVCAEAAIALAERLA 319 (2710)
T ss_pred HhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence 4443334 444455444 3666565566655544333445454443 333456667777788888887777766665444
Q ss_pred CCCCCchhhhhchHHHHHHhc-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHH
Q 015687 230 GKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~ 308 (402)
+++..........+...++.| +-+|..+...+..+|..-...+++..+.+--.|+-..|-.+-+-++..+...+...|.
T Consensus 320 ~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA 399 (2710)
T PRK14707 320 DDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALA 399 (2710)
T ss_pred ccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHH
Confidence 443333333333333344444 4466666666666665544344444443433344444444445566666666666666
Q ss_pred HhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHH
Q 015687 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA 388 (402)
Q Consensus 309 nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 388 (402)
.-..+.++..+.+--.|+-..|..+-+-+ +..+...++..|.--..++.+-.+.+--.++...|-.+-+-+|..+...|
T Consensus 400 ~~l~~d~~l~~~~~~Q~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~a 478 (2710)
T PRK14707 400 EHVVDDLELRKGLDPQGVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQT 478 (2710)
T ss_pred HHhccChhhhhhcchhhHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHH
Confidence 65556666655444445555565666677 76777777777776666666655544434444333333344666666666
Q ss_pred HHHHH
Q 015687 389 AWAIS 393 (402)
Q Consensus 389 ~~aL~ 393 (402)
+..|.
T Consensus 479 a~~La 483 (2710)
T PRK14707 479 ASALA 483 (2710)
T ss_pred HHHHH
Confidence 65554
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.015 Score=46.69 Aligned_cols=148 Identities=20% Similarity=0.176 Sum_probs=100.9
Q ss_pred ChHHHHHHhcc-chhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHH
Q 015687 200 ALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 278 (402)
Q Consensus 200 ~i~~L~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 278 (402)
.++.++..+.. ...++++..+.-++..+... ........+-+.+...+...+.+-...++.++..+-...++....
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~---~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLDA---AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 45566666644 56777888888888877411 111222334445555556555667778888888888887776665
Q ss_pred HH-HhCcHHHHHHhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchh-HHHHHHHHHHH
Q 015687 279 VI-EAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS-IKKEACWTISN 352 (402)
Q Consensus 279 ~~-~~~~i~~L~~~L~--~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~-v~~~a~~~L~n 352 (402)
++ ..|+.+.+.++.. ..+..++..++.+|..-|. .. .....+...+++.|-.+++.+.++. +|..|+-+|+-
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~-~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DK-SCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SH-HHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cH-HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 55 5589999999998 7788899999999977664 33 3444555578999999996553566 88888777753
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.18 Score=46.60 Aligned_cols=275 Identities=18% Similarity=0.155 Sum_probs=143.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHH-HHhhCCCchhhH
Q 015687 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWAL-GNVAGDSPKCRD 193 (402)
Q Consensus 116 i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L-~nl~~~~~~~~~ 193 (402)
+..+++=|.++....+|..++--|+.-+.+ ++++..+..+|.+..++..+.+ ++..+...++.++ .-++.+.+ .-.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 556666666444468888888888887774 9999999999999999998854 4443444444444 44444443 334
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch-hhhhchHHHHHHhcc---------CCChhHHHHHHH
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF-EQTRPALPALERLIH---------SNDDEVLTDACW 263 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~lL~---------~~~~~v~~~a~~ 263 (402)
.+.+.+....++.++.-........... .. ..... .........+.+.+. +....-+..++.
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~--~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall 172 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SS--RKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALL 172 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh------hh--hhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHH
Confidence 4445555555566663000000000000 00 00000 000111111111110 011112223333
Q ss_pred HHHHhc--------------cCChHHHHHHHHhCcHHHHHHhcC----CC-------C-----hhhHHHHHHHHHHhhcC
Q 015687 264 ALSYLS--------------DGTNDKIQAVIEAGVCPRLVELLR----HP-------S-----PSVLIPALRTVGNIVTG 313 (402)
Q Consensus 264 ~l~~l~--------------~~~~~~~~~~~~~~~i~~L~~~L~----~~-------~-----~~v~~~a~~~l~nl~~~ 313 (402)
++-.++ ...+...+.+...|+++.++..+. .. . ......++++|-+.+..
T Consensus 173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~ 252 (361)
T PF07814_consen 173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL 252 (361)
T ss_pred HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence 333321 112223345666788888888874 11 1 12446688888888776
Q ss_pred ChHHHHHHHhC--CChHHHHHH-hcCC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh-------c---
Q 015687 314 DDMQTQCIINH--QALPCLLDL-LTQN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-------L--- 378 (402)
Q Consensus 314 ~~~~~~~i~~~--~~l~~L~~l-l~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-------~--- 378 (402)
+.......+.. +.++.+... +... ....+...++.++.|++.++|+....+...++...+..+. .
T Consensus 253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~ 332 (361)
T PF07814_consen 253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPN 332 (361)
T ss_pred CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccc
Confidence 66554445433 333333332 2222 0334457888999999998877766665543322221111 1
Q ss_pred ----cCCHHHHHHHHHHHHHhhcCCC
Q 015687 379 ----NAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 379 ----~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
....+...-++.++.|++.+..
T Consensus 333 ~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 333 YVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred cccccccchHHHHHHHhHHHheeeCc
Confidence 1335788889999999998764
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.13 Score=49.96 Aligned_cols=174 Identities=18% Similarity=0.163 Sum_probs=119.7
Q ss_pred hhcCCCHHHHHHHHHHHHH--HhccCCCCchhHHhhcCcHHHHHHhhcC----CCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 79 GVWSDDRNIQLDATTQFRK--LLSIERSPPINEVIQSGVVPRFIEFLSR----DDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 79 ~l~s~~~~~~~~a~~~l~~--l~s~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
.+...+++....|...++. ++-++ .-+-+.+-|...+...+ ++ +.+|..|.-+|..+..-+.++..
T Consensus 861 ~IggtsEddf~da~~fikE~ElLyGe------ksvLs~F~pvVeE~csn~~~~sd-~~lq~aA~l~L~klMClS~~fc~- 932 (1128)
T COG5098 861 RIGGTSEDDFVDAFFFIKEKELLYGE------KSVLSNFKPVVEEGCSNSSRFSD-EELQVAAYLSLYKLMCLSFEFCS- 932 (1128)
T ss_pred hccCCCHHHHHHHHHHHHHHHHhhch------hHHHhhhhHHHHHHhccccccCC-HHHHHHHHHHHHHHHHHhHHHHH-
Confidence 4444445555555554442 33332 11123345555666655 44 89999999999887765444433
Q ss_pred HHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 153 VIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.-+|.|+..++ +++|.+|..|+-.||-++..-....+. .-..|.+.| .+.+..+++.+..++.+|.-..
T Consensus 933 ----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag 1002 (1128)
T COG5098 933 ----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG 1002 (1128)
T ss_pred ----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc
Confidence 35899999887 799999999999999887543322222 345677777 7788999999999999998653
Q ss_pred CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChH
Q 015687 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~ 274 (402)
...+.|-++.++.+|.++|.++..-|=..+..++..+..
T Consensus 1003 ----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt 1041 (1128)
T COG5098 1003 ----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT 1041 (1128)
T ss_pred ----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc
Confidence 234578899999999999999887777777777765543
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.041 Score=44.25 Aligned_cols=146 Identities=10% Similarity=0.086 Sum_probs=90.3
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
+++.|+++|+.+.+..++.+++++|+.|..-+|...+.+... .+.- .-...+...........+ .... .+.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~--~~~~~~~~~~~~~l~~~~-~~~~----~ee 81 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSK--SSENSNDESTDISLPMMG-ISPS----SEE 81 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCcc--ccccccccchhhHHhhcc-CCCc----hHH
Confidence 578889999887668999999999999988756544322221 1100 001112222222222111 1111 123
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhc
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~ 269 (402)
..-..++..|+..|++..-..-...+..++.++..........+...++|.++..+++.++..++..++-|+.+.
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 333446788899885544444555677777777765544557778899999999998877788888777776654
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.73 Score=43.43 Aligned_cols=259 Identities=14% Similarity=0.133 Sum_probs=146.8
Q ss_pred HHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC-C
Q 015687 91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-P 169 (402)
Q Consensus 91 a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~ 169 (402)
.-..|..++......+.+..++..++..|+.++.++| +.-|...-.+|..+-......+..+.. .+...|.+++.. .
T Consensus 110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~ 187 (409)
T PF01603_consen 110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETE 187 (409)
T ss_dssp HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcc
Confidence 3445555554332222445677788999999999999 899999999999988766666666654 466677777663 4
Q ss_pred CHHHHHHHHHHHHHhhCCCc-hhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHH
Q 015687 170 TDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 248 (402)
Q Consensus 170 ~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ 248 (402)
...-...++..++.+..+-. ..+..-.. =....++.+.....-.........++..++..+|.. ...++..+++
T Consensus 188 ~~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l----~~~~i~~llk 262 (409)
T PF01603_consen 188 RHNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSL----AEPVIKGLLK 262 (409)
T ss_dssp --STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGG----HHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh----HHHHHHHHHH
Confidence 44455677888888876522 22222111 012233444422233344555666666666554321 1223333333
Q ss_pred hccCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC---
Q 015687 249 LIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--- 324 (402)
Q Consensus 249 lL~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~--- 324 (402)
.--..+..-..-.+.-+..+...-+ .... -+...++..+...+.+++..|.+.|+....|- ....++..
T Consensus 263 ~WP~t~s~Kev~FL~el~~il~~~~~~~f~-~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~------~~~~li~~~~~ 335 (409)
T PF01603_consen 263 HWPKTNSQKEVLFLNELEEILEVLPPEEFQ-KIMVPLFKRLAKCISSPHFQVAERALYFWNNE------YFLSLISQNSR 335 (409)
T ss_dssp HS-SS-HHHHHHHHHHHHHHHTT--HHHHH-HHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSH------HHHHHHHCTHH
T ss_pred hCCCCCchhHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCH------HHHHHHHhChH
Confidence 3333444434444455555554322 2222 22234677888888999999999888776442 22223322
Q ss_pred CChHHHHHHhcCC----CchhHHHHHHHHHHHHhcCCHHHHHH
Q 015687 325 QALPCLLDLLTQN----YKKSIKKEACWTISNITAGNVNQIQA 363 (402)
Q Consensus 325 ~~l~~L~~ll~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~ 363 (402)
.++|.+..-|... =+..|+..|..++.-+..-+++.-..
T Consensus 336 ~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 336 VILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 3677777766432 15689999999999998877775444
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.19 Score=50.88 Aligned_cols=197 Identities=13% Similarity=0.102 Sum_probs=136.8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhh
Q 015687 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239 (402)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 239 (402)
+.|..-+.+.+..-|-.|+..+.-+..... .....-..|.+..++.....+.+..+...++.+|..++..-......+.
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 334444556777778888888887776654 1112222345556666666778888999999999999988655566667
Q ss_pred hchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH-HH
Q 015687 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-QT 318 (402)
Q Consensus 240 ~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~-~~ 318 (402)
...+|.+++.+......++..+..++-.++....- ....+.+...+.+.++.++..+...+.......+. ..
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 88899999999888887777776666555532211 12467788899999999999988888888765541 11
Q ss_pred HHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHH
Q 015687 319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAII 365 (402)
Q Consensus 319 ~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~ 365 (402)
..---.+++|.++....+. +..||..|.-+++-+.. +..+.+..++
T Consensus 408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L 454 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEEVFKKLL 454 (815)
T ss_pred chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1112237788999999888 99999999999998775 3344344333
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.23 Score=48.35 Aligned_cols=258 Identities=13% Similarity=0.152 Sum_probs=160.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 153 (402)
-.++..++..+.+.+..-...|...+. ..-+.++...+++.|+..+.-++...-....+.-++..... .+
T Consensus 257 ~~fLeel~lks~~eK~~Ff~~L~~~l~----~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~-~e----- 326 (690)
T KOG1243|consen 257 LLFLEELRLKSVEEKQKFFSGLIDRLD----NFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE-EE----- 326 (690)
T ss_pred HHHHHhcccCcHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc-cc-----
Confidence 455556666666666665555555332 12234555667777777776554111122222333333332 22
Q ss_pred HhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCC
Q 015687 154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233 (402)
Q Consensus 154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 233 (402)
...+++|.|++++.+++..+|-..+.-+-+.. +...+.+++..+++.+..-+ .++++.++...+.++..|+.--..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i---~~Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI---DHLTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHh---hhcCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhch
Confidence 55689999999999999999955554444443 33445667777888888888 788899999998888888754321
Q ss_pred CchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCc-HHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV-CPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 234 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~-i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
. ......+..+..+=.+++..++.+..-+++.++....... ..++ ......-+.++-..-|..+...+.....
T Consensus 403 ~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 403 R--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred h--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 1 2224455566555556678899988888888876543221 2333 2333344666666778888777766655
Q ss_pred CChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 313 ~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
..+. .-+...++|.+..+.-++ +..+|..|..++.....
T Consensus 477 ~~~~---~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 477 YFDQ---SEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLE 515 (690)
T ss_pred ccch---hhhhhhccccccccccCc-ccchhhHHHHHHHHHHh
Confidence 4332 123447888888888887 78888877777665543
|
|
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.58 Score=45.87 Aligned_cols=137 Identities=15% Similarity=0.196 Sum_probs=96.4
Q ss_pred hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHHHHHhhcCC
Q 015687 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGD 314 (402)
Q Consensus 236 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L-~~~~~~v~~~a~~~l~nl~~~~ 314 (402)
......++|.|...+++.+..+++.++..+..+++.-+. ..+..-++|++-.+. .+.+..++..++-|++.++..-
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l 460 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL 460 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH
Confidence 344577889888999999999999999999988866552 255566788887764 5677899999999999998322
Q ss_pred hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCC
Q 015687 315 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE 381 (402)
Q Consensus 315 ~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 381 (402)
+ ...++ ..+..+.+..+.. +|.+......+..++....+.. ..++...++|.++-+...+.
T Consensus 461 D--~~~v~--d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 461 D--KAAVL--DELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred H--HHHhH--HHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 2 11122 2355566666677 8888888888877777643332 33444568888887766544
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=95.89 E-value=1.1 Score=39.32 Aligned_cols=218 Identities=15% Similarity=0.163 Sum_probs=127.3
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhhHHHH
Q 015687 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVL 196 (402)
Q Consensus 119 L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 196 (402)
|=..|.+++ +.+|..|+.+|+.+...-+... ....-+..|+.++.+ .|......++.++..|.....-.....
T Consensus 4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~- 78 (262)
T PF14500_consen 4 LGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA- 78 (262)
T ss_pred hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH-
Confidence 445677877 8999999999998877544221 222335666665543 455555566777777764332111111
Q ss_pred hcCChHHHHHHhc-cchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccC-CChhHHHHHHHHHHHhccCChH
Q 015687 197 SNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTND 274 (402)
Q Consensus 197 ~~g~i~~L~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~ 274 (402)
..++..+..... +......+..+...+..+.......-......++..+++.+.. .||.-...+...+..+...-+-
T Consensus 79 -~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 79 -VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred -HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 112333332221 1224556777778888777664222222335667777777755 4888888887777776543321
Q ss_pred HHHHHHHhCcHHHHHHhcC--------C-C-Ch--hhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhH
Q 015687 275 KIQAVIEAGVCPRLVELLR--------H-P-SP--SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI 342 (402)
Q Consensus 275 ~~~~~~~~~~i~~L~~~L~--------~-~-~~--~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v 342 (402)
....+.+.+.+. . + ++ -.++.--..|.+....++... .-.+|.|+.-|.++ .+.+
T Consensus 158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~-~~~~ 224 (262)
T PF14500_consen 158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST-SPSV 224 (262)
T ss_pred -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-CcHH
Confidence 122233333331 1 1 21 234444555555555556433 36789999999999 8899
Q ss_pred HHHHHHHHHHHhc
Q 015687 343 KKEACWTISNITA 355 (402)
Q Consensus 343 ~~~a~~~L~nl~~ 355 (402)
|..+..+|...+.
T Consensus 225 K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 225 KLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998775
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.29 Score=45.22 Aligned_cols=143 Identities=17% Similarity=0.174 Sum_probs=84.2
Q ss_pred HHHHHHhccCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc---CCCChhhHHHHHHHHHHhhcCChH--
Q 015687 243 LPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---RHPSPSVLIPALRTVGNIVTGDDM-- 316 (402)
Q Consensus 243 l~~L~~lL~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L---~~~~~~v~~~a~~~l~nl~~~~~~-- 316 (402)
.+.+-.-+..+ ...-+..|+..+..++..-......++. +.+..++.-. .+.++.-+..|++.++.++.....
T Consensus 212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~ 290 (370)
T PF08506_consen 212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTK 290 (370)
T ss_dssp HHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BT
T ss_pred HHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcccc
Confidence 33344444333 3446777888888887543322221211 1222222211 234677888999999999875531
Q ss_pred ----------HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHH
Q 015687 317 ----------QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK 386 (402)
Q Consensus 317 ----------~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 386 (402)
+...++...++|-|. - ..+..|-++..|++.+..+-..-+. +.+. +++|.++..|.+++.-|..
T Consensus 291 ~Gvt~~~~~v~v~~Ff~~~v~peL~-~-~~~~~piLka~aik~~~~Fr~~l~~--~~l~--~~~~~l~~~L~~~~~vv~t 364 (370)
T PF08506_consen 291 SGVTQTNELVDVVDFFSQHVLPELQ-P-DVNSHPILKADAIKFLYTFRNQLPK--EQLL--QIFPLLVNHLQSSSYVVHT 364 (370)
T ss_dssp TB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-H--HHHH--HHHHHHHHHTTSS-HHHHH
T ss_pred CCcccccccccHHHHHHHHhHHHhc-c-cCCCCcchHHHHHHHHHHHHhhCCH--HHHH--HHHHHHHHHhCCCCcchhh
Confidence 234555666777666 1 2223788999999999988764332 1222 2789999999999999999
Q ss_pred HHHHHH
Q 015687 387 EAAWAI 392 (402)
Q Consensus 387 ~a~~aL 392 (402)
.|+.++
T Consensus 365 yAA~~i 370 (370)
T PF08506_consen 365 YAAIAI 370 (370)
T ss_dssp HHHHHH
T ss_pred hhhhhC
Confidence 998875
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >KOG1566 consensus Conserved protein Mo25 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.1 Score=39.41 Aligned_cols=225 Identities=13% Similarity=0.135 Sum_probs=141.7
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHh--cCChHHHHHHhccch-hhHHHHHHHHHHHHh
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS--NGALMPLLAQFNEHA-KLSMLRNATWTLSNF 227 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~g~i~~L~~~l~~~~-~~~~~~~a~~~L~~l 227 (402)
+.+.++|....|++.+...+-+-+.-++....|+-...-+.|....+ ..-.+.+-.++.... .+++.-++...|...
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLREC 152 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 34667789999999998888788878888888775433222222111 012233333332222 256666666666666
Q ss_pred hhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCc---HHH-HHHhcCCCChhhHHHH
Q 015687 228 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV---CPR-LVELLRHPSPSVLIPA 303 (402)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~---i~~-L~~~L~~~~~~v~~~a 303 (402)
.++..-.........+.......+.+.-++..+|..+...+.......+..++..+. ++. --.++.+++.-.+..+
T Consensus 153 irhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs 232 (342)
T KOG1566|consen 153 IRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS 232 (342)
T ss_pred HhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence 665433333333455556666667777788899999888876554444444554433 233 5556788888889999
Q ss_pred HHHHHHhhcCCh---HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHH-HcCCHHHHHHHh
Q 015687 304 LRTVGNIVTGDD---MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAII-EAGIIGPLVNLL 377 (402)
Q Consensus 304 ~~~l~nl~~~~~---~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~-~~~~i~~L~~ll 377 (402)
+..+|.+..+.+ .-++++-+..-+..++.+|..+ +..++-+|..+..-..+. .+.-+..++ .+ =+.|++++
T Consensus 233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvAnpnK~q~V~~IL~~N--r~KLl~~l 309 (342)
T KOG1566|consen 233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVANPNKPQPVRDILVRN--RPKLLELL 309 (342)
T ss_pred HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhcCCCCCchHHHHHHhC--cHHHHHHH
Confidence 999999987554 2344444556788999999998 899999999988877773 333333333 32 24455554
Q ss_pred c
Q 015687 378 L 378 (402)
Q Consensus 378 ~ 378 (402)
.
T Consensus 310 ~ 310 (342)
T KOG1566|consen 310 H 310 (342)
T ss_pred H
Confidence 3
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=95.87 E-value=1.4 Score=44.76 Aligned_cols=238 Identities=17% Similarity=0.190 Sum_probs=138.0
Q ss_pred hcCcHHHHHHhhcCCC----CHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhC----CCC----HHHHHHHHH
Q 015687 112 QSGVVPRFIEFLSRDD----FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS----SPT----DDVREQAVW 179 (402)
Q Consensus 112 ~~g~i~~L~~lL~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~----~~~----~~v~~~a~~ 179 (402)
+.|++..+++++.+-. ...+....+..|...+.. +.+++.+++.|+++.|+..+. ... .++.+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 4677888888887532 135556667777777765 899999999999999998774 333 678888888
Q ss_pred HHHHhhCCCchhhH----HHHhc--------CChHHHHHHhccc---hhhHHHHHHHHHHHHhhhCCCCCchhhhhchHH
Q 015687 180 ALGNVAGDSPKCRD----LVLSN--------GALMPLLAQFNEH---AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 244 (402)
Q Consensus 180 ~L~nl~~~~~~~~~----~~~~~--------g~i~~L~~~l~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~ 244 (402)
++-.+..+...... ..... ..+..+++.+... .++.+....+.+|-+|+.+.+......+..+-|
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p 273 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKP 273 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHH
Confidence 77777643321100 00111 1266666666432 368889999999999998864332222222222
Q ss_pred HHHHhcc-----CCChhHHHHHHHHHHHhcc----C--ChHHHHHHHHhCcHHHHHHhcCCC--------Chh-------
Q 015687 245 ALERLIH-----SNDDEVLTDACWALSYLSD----G--TNDKIQAVIEAGVCPRLVELLRHP--------SPS------- 298 (402)
Q Consensus 245 ~L~~lL~-----~~~~~v~~~a~~~l~~l~~----~--~~~~~~~~~~~~~i~~L~~~L~~~--------~~~------- 298 (402)
.+ ++=. ..+..+. +.+++.++. . .....+.+++.|++...+.+|... ++.
T Consensus 274 ~l-~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ 349 (802)
T PF13764_consen 274 YL-DFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR 349 (802)
T ss_pred hc-ChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence 22 1111 1122222 333344332 2 135567788999999998887321 111
Q ss_pred -hHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 299 -VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 299 -v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
-...+++.|.-++.+.. .++..+..++++.+..+=+.+.+..|=.-|=.+|-.+..
T Consensus 350 psLp~iL~lL~GLa~gh~-~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 350 PSLPYILRLLRGLARGHE-PTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CcHHHHHHHHHHHHhcCH-HHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 23456777777777655 344556677776655554433233333333334434433
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.26 Score=45.70 Aligned_cols=194 Identities=17% Similarity=0.237 Sum_probs=121.5
Q ss_pred HHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHH---HhhhCCCCCchhhhhchHHHHHHhccC
Q 015687 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS---NFCRGKPQPLFEQTRPALPALERLIHS 252 (402)
Q Consensus 176 ~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~---~l~~~~~~~~~~~~~~~l~~L~~lL~~ 252 (402)
.|+.+|-.+....+..-..+.+.+++..+++.+. ..- ..++. +-..+...+. ........ ...+..
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~-~Ev-------~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~i~~ 71 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQ-YEV-------DFALEENKNEEAGSGIPP-EYKESSVD--GYSISY 71 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHH-HHH-------HHHHhcccccCCCCCCCC-Cccccccc--ccccCH
Confidence 4566666676666556677889999999999983 221 11111 1111110000 00000000 000111
Q ss_pred CChhHHHHHHHHHHHhcc---CChHHHHHHHH-hCcHHHHHHhcCCCC---hhhHHHHHHHHHHhhcCChHHHHHHHhCC
Q 015687 253 NDDEVLTDACWALSYLSD---GTNDKIQAVIE-AGVCPRLVELLRHPS---PSVLIPALRTVGNIVTGDDMQTQCIINHQ 325 (402)
Q Consensus 253 ~~~~v~~~a~~~l~~l~~---~~~~~~~~~~~-~~~i~~L~~~L~~~~---~~v~~~a~~~l~nl~~~~~~~~~~i~~~~ 325 (402)
.....+...++.+..+.. +..+....+++ ..++..|..++.+.. +.+-..|+.++..+....|.....+.+.|
T Consensus 72 ~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~G 151 (379)
T PF06025_consen 72 QRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAG 151 (379)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcC
Confidence 122334445555555544 34455555677 566777777777654 68889999999999999998888889999
Q ss_pred ChHHHHHHhc-CC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCC
Q 015687 326 ALPCLLDLLT-QN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE 381 (402)
Q Consensus 326 ~l~~L~~ll~-~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 381 (402)
+.+.+++.+. .. .+.++-...--+++.||-+ ....+.+.+.+.++.+++++.+.+
T Consensus 152 l~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 152 LIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred ChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCHH
Confidence 9999999887 33 2345555556677777764 667888889999999999987644
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.31 Score=45.87 Aligned_cols=233 Identities=14% Similarity=0.092 Sum_probs=137.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
+..|+..+.|+|+..+......+.++... .......+...+...|.+++.......-..+.+.+++.+..|..-....
T Consensus 135 i~~Ll~l~~S~D~rER~~lk~~l~~iy~k--~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~ 212 (409)
T PF01603_consen 135 IKKLLELFDSPDPRERDYLKTILHRIYGK--FPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE 212 (409)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence 67888999999999999998999988653 4566677777778888998886654566778889999988864322212
Q ss_pred HHhCCchHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 153 VIDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
....-....|+.|...+. .....+-..++..++..+|..... ++..+++.- ...+..-....+.-+..+...-
T Consensus 213 eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~W-P~t~s~Kev~FL~el~~il~~~ 286 (409)
T PF01603_consen 213 EHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHW-PKTNSQKEVLFLNELEEILEVL 286 (409)
T ss_dssp HHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS--SS-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCchhHHHHHHHHHHHHHhc
Confidence 111112344444555432 233455556666666555543222 233444444 3333333333444455555443
Q ss_pred CCCch-hhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcCC-----CChhhHHH
Q 015687 232 PQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRH-----PSPSVLIP 302 (402)
Q Consensus 232 ~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~~L~~-----~~~~v~~~ 302 (402)
+...+ .....++..+..++.+.+-.|.+.|+....| +.. -.++.. .+++.+.+-|.. =+..++..
T Consensus 287 ~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~-~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~ 360 (409)
T PF01603_consen 287 PPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYF-LSLISQNSRVILPIIFPALYRNSKNHWNQTVRNL 360 (409)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHH-HHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHH-HHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 32222 2336677788888899999998888755422 211 222222 256677776643 25689999
Q ss_pred HHHHHHHhhcCChHHHH
Q 015687 303 ALRTVGNIVTGDDMQTQ 319 (402)
Q Consensus 303 a~~~l~nl~~~~~~~~~ 319 (402)
|..++.-+...++...+
T Consensus 361 a~~vl~~l~~~d~~lf~ 377 (409)
T PF01603_consen 361 AQNVLKILMEMDPKLFD 377 (409)
T ss_dssp HHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHhCHHHHH
Confidence 99999988887765433
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.41 Score=48.55 Aligned_cols=185 Identities=15% Similarity=0.124 Sum_probs=128.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 153 (402)
+.+-..+.+.+...+..|+..+...++... ....-...|.+-.++.....+.+..+...|+.+|..|+..........
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 344456668899999999999999987542 111122344555666655544447888999999999998655443333
Q ss_pred HhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC-
Q 015687 154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP- 232 (402)
Q Consensus 154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~- 232 (402)
.. +.+|.|+.-+......+++.+..++-.++...+. ....+.++..+ .+.++.++..+...+....+...
T Consensus 334 ~~-~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 334 AK-NVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HH-hhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCC
Confidence 32 6789999999888888988888877766653221 11455666677 77888887776666655555432
Q ss_pred -CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhc
Q 015687 233 -QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (402)
Q Consensus 233 -~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~ 269 (402)
.........++|.++....+.+.+|+..+..+++-+.
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 2333455788999999999999999999999887765
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.15 Score=44.03 Aligned_cols=101 Identities=17% Similarity=0.134 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHh
Q 015687 86 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 165 (402)
Q Consensus 86 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 165 (402)
.....|+..|.-++-.. ++....+-+...+..|+++|.....+.++..++.+|..+.-+++.+...+-+.+++..++.+
T Consensus 106 ~li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 34555677777665443 45555677888999999999665448999999999999999999999999999999999999
Q ss_pred hCC--CCHHHHHHHHHHHHHhhCC
Q 015687 166 LSS--PTDDVREQAVWALGNVAGD 187 (402)
Q Consensus 166 L~~--~~~~v~~~a~~~L~nl~~~ 187 (402)
+++ .+.+++-.++..|.-...+
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHcc
Confidence 986 5778888888888776543
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.79 E-value=2 Score=41.42 Aligned_cols=249 Identities=15% Similarity=0.110 Sum_probs=136.5
Q ss_pred CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCH---HHHHHHHHHHHHhhcCCCcchHHHHhCCchH
Q 015687 84 DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFP---QLQFEAAWALTNIASGTSENTRVVIDHGAVP 160 (402)
Q Consensus 84 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 160 (402)
..+.+..+...+..++........ ... ..+.+.+.....+ ..+.+|+.+| +.+..+. ...+.++.+
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~~~~--~~R----~~fF~~I~~~~~~~d~~~~l~aL~~L---T~~Grdi--~~~~~~i~~ 110 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDSSSG--LMR----AEFFRDISDPSNDDDFDLRLEALIAL---TDNGRDI--DFFEYEIGP 110 (464)
T ss_pred CHHHHHHHHHHHHHHHHccccccH--HHH----HHHHHHHhcCCCchhHHHHHHHHHHH---HcCCcCc--hhcccchHH
Confidence 467888888888888765422111 111 1233333333213 3455555555 4443333 235667788
Q ss_pred HHHHhhCC---------------------------CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchh
Q 015687 161 IFVRLLSS---------------------------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK 213 (402)
Q Consensus 161 ~L~~lL~~---------------------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~ 213 (402)
.|...+.. .+.......+..+.|+.+.+...-+.-.-.+.+..++.+.....+
T Consensus 111 ~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~ 190 (464)
T PF11864_consen 111 FLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSS 190 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCc
Confidence 88877631 122333455566666665544322222223456666666555555
Q ss_pred hHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC
Q 015687 214 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 293 (402)
Q Consensus 214 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~ 293 (402)
......+..++-.+.... ..+......++..|....... +....+-.++.||+...... ..+..|..+|.
T Consensus 191 ~~di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~ 260 (464)
T PF11864_consen 191 EDDIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILR 260 (464)
T ss_pred HHHHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHc
Confidence 556677777777666653 222233345555555553222 66667777888888544322 13566777773
Q ss_pred C------CChhhHHHHHHHHHHhhcCChHHHHHHHhC---CChHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 015687 294 H------PSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (402)
Q Consensus 294 ~------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~---~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 354 (402)
+ .+..+..-|+..++.+..+..+....-+.. -+++.+...++.+ ++.+--+....+.++.
T Consensus 261 ~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 261 SPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL 329 (464)
T ss_pred ccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence 2 234566788999999887763222212221 2677888888877 6666666666666666
|
|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=3.6 Score=45.75 Aligned_cols=308 Identities=14% Similarity=0.077 Sum_probs=162.5
Q ss_pred cHHHHHHhhcC--CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 72 SLPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 72 ~i~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
+|-.+++.+.. +++.-+ .++..|...+..+ ..-...+-..|+-..|-.+-+-++.+.....+.++=..++.+ +..
T Consensus 206 ~ia~~lNa~sKWp~~~~c~-~aa~~la~~l~~~-~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~-~~l 282 (2710)
T PRK14707 206 GVATVLNALCKWPDTPDCG-NAVSALAERLADE-SRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDD-PGL 282 (2710)
T ss_pred HHHHHHHHHhcCCCChhHH-HHHHHHHHHHcCc-HHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh-HHH
Confidence 45556666654 334333 4444454444433 233344444444444444445555344444444444556643 555
Q ss_pred hHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
++.+-..++-..|-.+-+-++..+...|...|..=..++++.+..+ +.-.+...++-|.+.+|..+-+.++.+|..=..
T Consensus 283 ~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~ 361 (2710)
T PRK14707 283 RKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLV 361 (2710)
T ss_pred HHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhc
Confidence 5544443433333334444777777777777766555666655443 334566777778788877777777666654443
Q ss_pred CCCCCchhh-hhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHH
Q 015687 230 GKPQPLFEQ-TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (402)
Q Consensus 230 ~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~ 308 (402)
.++...... ..++-..|..+-+-++..+...+...|..=...+.+..+.+-..|+-..|-.+-+-++..+...+...+.
T Consensus 362 ~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA 441 (2710)
T PRK14707 362 ADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALA 441 (2710)
T ss_pred cCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHH
Confidence 333222222 2333334433335577777777777776544455555444444455455555556677666666666666
Q ss_pred HhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 015687 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384 (402)
Q Consensus 309 nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 384 (402)
--...+.+..+.+--.++...|..+-+-+ +..+..+++-.|..=..+.++..+.+--.++...|-.+=+.++...
T Consensus 442 ~~la~d~~l~~~~~p~~va~~LnalSKWP-d~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~ 516 (2710)
T PRK14707 442 GRLAHDTELCKALDPINVTQALDALSKWP-DTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPI 516 (2710)
T ss_pred HHHhccHHHHhhcChHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHH
Confidence 55555554444333334444555555666 6666666666665444444554444433444444444444455433
|
|
| >KOG1566 consensus Conserved protein Mo25 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.74 E-value=1.3 Score=39.05 Aligned_cols=201 Identities=12% Similarity=0.097 Sum_probs=139.8
Q ss_pred HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCc---hhhh---hchHHHHHHhccCCChhHHHHHHHHHH
Q 015687 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL---FEQT---RPALPALERLIHSNDDEVLTDACWALS 266 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~---~~~l~~L~~lL~~~~~~v~~~a~~~l~ 266 (402)
..+.+.|.+..++..+ ...+-+.+..++..+.++-+...... ..+. ...++.|+..-.. .+++.-.+-..+.
T Consensus 73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 4566788889999988 77788888999999999987752221 1222 3444455444111 2555444444444
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCC----hHHHHHHhcCCCchhH
Q 015687 267 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA----LPCLLDLLTQNYKKSI 342 (402)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~----l~~L~~ll~~~~~~~v 342 (402)
....+ +.....+..+.-+.....++..+.-++...|..+...+.+........++..+. .++--.++.++ +.-+
T Consensus 151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt 228 (342)
T KOG1566|consen 151 ECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT 228 (342)
T ss_pred HHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence 44433 334456777777888888888888899999999999988776666666665433 34466788888 9999
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 343 KKEACWTISNITAG--NVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 343 ~~~a~~~L~nl~~~--~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
+..+...++.+..+ +.......+ +..-+..+..+|.++...+|.+|-....-.+.
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVA 286 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhc
Confidence 99999999998863 444444444 45678999999999999999999876654443
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.12 Score=41.41 Aligned_cols=144 Identities=19% Similarity=0.165 Sum_probs=95.2
Q ss_pred HHHHHhcc--CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 015687 244 PALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI 321 (402)
Q Consensus 244 ~~L~~lL~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i 321 (402)
+.++..|. ...++++..+.-++..+-+.. ..-...-+-+.+-..+...+.+-...++.++..+-.+.++....+
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~----~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLLDAA----REEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 34444443 467788888888888774211 112222233444445555555567788899999998888777666
Q ss_pred H-hCCChHHHHHHhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhc-cCCHH-HHHHHHHHHHH
Q 015687 322 I-NHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFE-IKKEAAWAISN 394 (402)
Q Consensus 322 ~-~~~~l~~L~~ll~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~-v~~~a~~aL~n 394 (402)
+ ..|+++.+..++. +. +..+...++-+|+.-|. +...+..+.++ +++.|-+.+. +++.. +|..|+-+|+.
T Consensus 82 ~~~eg~~~~l~~~~~~~~~-~~~~~~~~lell~aAc~-d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSK-DRKVQKAALELLSAACI-DKSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTT-SHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHc-cHHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 5 6699999999998 55 77777777777775554 45555555544 8899999995 45555 78888887764
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.28 Score=47.86 Aligned_cols=128 Identities=18% Similarity=0.167 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC
Q 015687 216 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 295 (402)
Q Consensus 216 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~ 295 (402)
+.+.++.++..+-..+ .....+.+.+..+++...+.|..|+..+|..|..+.+.... +...+-.++...+..-+.+.
T Consensus 62 Il~fla~fv~sl~q~d--~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Dr 138 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLD--KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDR 138 (892)
T ss_pred HHHHHHHHHHhhhccC--chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhcc
Confidence 4444444444444332 22235678888888888899999999999999999874332 23334456677788888889
Q ss_pred ChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 015687 296 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (402)
Q Consensus 296 ~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 351 (402)
.+.||..|+.+|+.+=..+.+. +..+...+..+++++++++||+.|...+.
T Consensus 139 ep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 139 EPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred CchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 9999999999999986322111 12445677888877768899998755544
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.25 Score=46.94 Aligned_cols=122 Identities=18% Similarity=0.209 Sum_probs=86.6
Q ss_pred chHHHHHHh-ccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHH
Q 015687 241 PALPALERL-IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQT 318 (402)
Q Consensus 241 ~~l~~L~~l-L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~l~nl~~~~~~~~ 318 (402)
+++..+++. ..+.+.+|+..|+-+|+.+|..+.+ .+...+++|. +.+..||.....+||-.|.+...+.
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 455566666 4667899999999999998866543 3456667664 5688999999999999998876432
Q ss_pred HHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCC
Q 015687 319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAE 381 (402)
Q Consensus 319 ~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~ 381 (402)
.++.|-.++.+. ..-||+.|+-+++.|.. ++++-...+ .++...+.+++.+..
T Consensus 622 -------a~diL~~L~~D~-~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~Kh 675 (926)
T COG5116 622 -------ATDILEALMYDT-NDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDKH 675 (926)
T ss_pred -------HHHHHHHHhhCc-HHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhhh
Confidence 245666777777 88899999999998886 333321111 235666777776543
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.50 E-value=4.4 Score=43.50 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHhhcCCh-----------HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015687 298 SVLIPALRTVGNIVTGDD-----------MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366 (402)
Q Consensus 298 ~v~~~a~~~l~nl~~~~~-----------~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 366 (402)
......++++|-++...+ .+....+..+++..|.-+.... +..+|..|.-.++.+|..+|. .+.+
T Consensus 1187 p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~-~~~lR~~al~~Lg~~ci~hp~---l~~~ 1262 (1692)
T KOG1020|consen 1187 PKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDK-DGELRRKALINLGFICIQHPS---LFTS 1262 (1692)
T ss_pred HHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhCch---hhhh
Confidence 456678899999987322 1112234557777888888887 889999999999999985554 3334
Q ss_pred cCCHHHHHHHhccCCH
Q 015687 367 AGIIGPLVNLLLNAEF 382 (402)
Q Consensus 367 ~~~i~~L~~ll~~~~~ 382 (402)
..+...+...|.+.+.
T Consensus 1263 ~~v~nly~~ila~~n~ 1278 (1692)
T KOG1020|consen 1263 REVLNLYDEILADDNS 1278 (1692)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 4455555666665443
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.53 Score=45.95 Aligned_cols=187 Identities=11% Similarity=0.062 Sum_probs=125.4
Q ss_pred HhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHH
Q 015687 196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 275 (402)
Q Consensus 196 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~ 275 (402)
+..++++.|++++ ...|..++-..+.-+-....+ -........++|.+...+.+.++.+++.++.++..++..-..+
T Consensus 327 yq~~i~p~l~kLF-~~~Dr~iR~~LL~~i~~~i~~--Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLF-KSPDRQIRLLLLQYIEKYIDH--LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHh-cCcchHHHHHHHHhHHHHhhh--cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 4566899999999 777888877766655555544 3334455789999999999999999999999998887543322
Q ss_pred HHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 276 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 276 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
.+....+..+..+-.++...+|.....|+|.+........ .+.-..-.+.+-+.++ -..-|..+.|.+.....
T Consensus 404 ---~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdp-f~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 404 ---NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDP-FVPARKAGVLALAATQE 476 (690)
T ss_pred ---hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCC-CCCchhhhhHHHhhccc
Confidence 2222233444444445667899999999999987644322 2222233444556666 56678888888886655
Q ss_pred CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 356 GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 356 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
.-+ +.=+...++|.++-+.-+.+..++..|-.++..+
T Consensus 477 ~~~---~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 477 YFD---QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred ccc---hhhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 211 1122344788888888888888888777776544
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.064 Score=36.45 Aligned_cols=66 Identities=20% Similarity=0.334 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcC
Q 015687 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNG 199 (402)
Q Consensus 132 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g 199 (402)
...|+|+++++++. +.....+.+.++++.++++.. ++...+|-.|.++|+-++.... ..+.+.+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~-G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE-GAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH-HHHHHHHcC
Confidence 56799999999984 666666667899999999887 5788999999999998886655 345554443
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.19 Score=41.62 Aligned_cols=81 Identities=19% Similarity=0.125 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHh--Cc--HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHh---CCCh
Q 015687 255 DEVLTDACWALSYLSDGTNDKIQAVIEA--GV--CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN---HQAL 327 (402)
Q Consensus 255 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~--i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~---~~~l 327 (402)
..-.......++|++.....+ +.+++. +. +..|+.++.+.+..-|.-++.+|.|+|...+.... ++. .+++
T Consensus 72 ~~~~~yla~vl~NlS~~~~gR-~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~-LL~~~~~~iL 149 (192)
T PF04063_consen 72 KDNYDYLASVLANLSQLPEGR-QFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEW-LLSDDEVDIL 149 (192)
T ss_pred CcchhHHHHHHHHhcCCHHHH-HHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHH-hcCchhhhhH
Confidence 444567778889999766644 556654 34 78899999988777778899999999997765533 443 3677
Q ss_pred HHHHHHhcCC
Q 015687 328 PCLLDLLTQN 337 (402)
Q Consensus 328 ~~L~~ll~~~ 337 (402)
|.|+--|..+
T Consensus 150 p~LLlPLaGp 159 (192)
T PF04063_consen 150 PYLLLPLAGP 159 (192)
T ss_pred HHHHhhccCC
Confidence 7777776644
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=95.25 E-value=2.7 Score=39.45 Aligned_cols=229 Identities=14% Similarity=0.112 Sum_probs=130.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCc--hhHHhhcCcHHHHHHhhcCCC----CH--HHHHHHHHHHHHhhcC
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDD----FP--QLQFEAAWALTNIASG 145 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~--~~~~~~~g~i~~L~~lL~~~~----~~--~~~~~a~~~L~~l~~~ 145 (402)
..+...+...+.+.++.|+....+++.+.+-.. .+.+.+.-+.+.+-+++.+.+ .+ -.+..++.+|+-.|..
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 456666777788899999999999987653222 334677777888888887642 22 2344556677777765
Q ss_pred CCcch--HHHHhCCchHHHHHhhCC-CC------HHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccch---h
Q 015687 146 TSENT--RVVIDHGAVPIFVRLLSS-PT------DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA---K 213 (402)
Q Consensus 146 ~~~~~--~~~~~~g~i~~L~~lL~~-~~------~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~---~ 213 (402)
++.. ..++ ..||.|..+++. .+ ..+.+-+..+|..++...+. ...++..|+++.+.++-.-.. |
T Consensus 94 -pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d 169 (698)
T KOG2611|consen 94 -PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHD 169 (698)
T ss_pred -hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchh
Confidence 4332 3344 469999998874 22 33788899999999988664 567788999999987652211 2
Q ss_pred hHHHHHHHHHHHHhhhC-C-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh-------HH---HHHHHH
Q 015687 214 LSMLRNATWTLSNFCRG-K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-------DK---IQAVIE 281 (402)
Q Consensus 214 ~~~~~~a~~~L~~l~~~-~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~-------~~---~~~~~~ 281 (402)
..+ +.-.+.-+... . -.........++..+..-+...+.......|..|..+..... .. ...-..
T Consensus 170 ~al---al~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~ 246 (698)
T KOG2611|consen 170 MAL---ALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLR 246 (698)
T ss_pred HHH---HHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHH
Confidence 221 11111111111 1 111111112234444444455566677778888874432221 11 011122
Q ss_pred hCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 282 AGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 282 ~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
.|+...|-.-+ .+.-+.+|+....|+..
T Consensus 247 ~G~~~IL~~kv---~p~qr~pAL~Laa~~~h 274 (698)
T KOG2611|consen 247 TGVVAILQNKV---APSQRLPALILAANMMH 274 (698)
T ss_pred HHHHHHHhccc---CchhcChHHHHHHHHHH
Confidence 34433333333 34446677777766654
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.22 E-value=2.9 Score=41.15 Aligned_cols=106 Identities=18% Similarity=0.154 Sum_probs=79.1
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh
Q 015687 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (402)
Q Consensus 113 ~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (402)
.|++..++....+.+ ..+++.++.+|..+.....+ ....+-.++...+..=+.+..+.||.+|+.+|..+=++...-
T Consensus 84 ~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKD-KKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE- 160 (892)
T ss_pred HHHHHHHHhcccCcc-hhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-
Confidence 456777777777777 89999999999998874333 333343477777777777888999999999999997543221
Q ss_pred HHHHhcCChHHHHHHhccchhhHHHHHHHHHHH
Q 015687 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 225 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~ 225 (402)
+..+...+..++..++++++++.++..+.
T Consensus 161 ----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 ----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 23367788888888899999998875544
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.1 Score=44.92 Aligned_cols=196 Identities=16% Similarity=0.118 Sum_probs=111.2
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC----CCHHHHHHHHHHHHHhhC----
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVAG---- 186 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~---- 186 (402)
.+..+.+++.+.. ---..|+..|..+......-... .+..+..++.+ .++.++..|+-+++.+..
T Consensus 396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 4666777777754 12334555565555432233332 35555556654 467788888888888863
Q ss_pred CC-----chhhHHHHhcCChHHHHHHhc---cchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCC---Ch
Q 015687 187 DS-----PKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DD 255 (402)
Q Consensus 187 ~~-----~~~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~---~~ 255 (402)
.. ............++.+...+. ...+..-+..++.+|.|+-.. ..++.+.+++... +.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccch
Confidence 21 001122223346777777774 234557778889999998643 6788888888766 67
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHH
Q 015687 256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 333 (402)
Q Consensus 256 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~l 333 (402)
.++..|++++..+....++.+ .+.+.+++.+ .+.++|..|+.+|-. ..|.. ..+..+...
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~~-------~~l~~i~~~ 600 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR---CNPSP-------SVLQRIAQS 600 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH---T---H-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh---cCCCH-------HHHHHHHHH
Confidence 899999999999877666543 3667777744 356788888766644 22211 234456777
Q ss_pred hcCCCchhHHHH
Q 015687 334 LTQNYKKSIKKE 345 (402)
Q Consensus 334 l~~~~~~~v~~~ 345 (402)
+....+..|...
T Consensus 601 l~~E~~~QV~sf 612 (618)
T PF01347_consen 601 LWNEPSNQVASF 612 (618)
T ss_dssp HTT-S-HHHHHH
T ss_pred HhhCchHHHHHH
Confidence 765535555443
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.4 Score=39.77 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=83.8
Q ss_pred CCChhHHHHHHHHHHHhccCChHHHHHHHH----------------hCcHHHHHHhcCC------CChhhHHHHHHHHHH
Q 015687 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIE----------------AGVCPRLVELLRH------PSPSVLIPALRTVGN 309 (402)
Q Consensus 252 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~----------------~~~i~~L~~~L~~------~~~~v~~~a~~~l~n 309 (402)
+.+......++..|+|++..+... ..+++ ...+..|+..+.. ....-......++.|
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 344455667788888888755433 22222 2356677777644 223455677889999
Q ss_pred hhcCChHHHHHHHhC--CC--hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHhcc
Q 015687 310 IVTGDDMQTQCIINH--QA--LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLN 379 (402)
Q Consensus 310 l~~~~~~~~~~i~~~--~~--l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~ 379 (402)
++.. ++.++.+++. +. +..|+.++.+. +..-|..++.+|-|+|-....+ ..++. .+++|.|+--|..
T Consensus 85 lS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLaG 158 (192)
T PF04063_consen 85 LSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLAG 158 (192)
T ss_pred hcCC-HHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhccC
Confidence 9874 5567777754 34 77888888888 7777888999999999876665 44443 4788888877754
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.47 Score=44.31 Aligned_cols=163 Identities=12% Similarity=0.141 Sum_probs=94.3
Q ss_pred HHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCChhh
Q 015687 221 TWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSV 299 (402)
Q Consensus 221 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L-~~~~~~v 299 (402)
...++.+..............++..+..-..+++..++..|++.|.+.+.+.++........ .+..++.-| ...+.+|
T Consensus 238 ~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V 316 (533)
T KOG2032|consen 238 IAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEV 316 (533)
T ss_pred HHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHH
Confidence 33444444443222223334455555555567788999999999999998866554433332 345555544 4456789
Q ss_pred HHHHHHHHHHhhcCCh--HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc--CC--HHHHHHHHHcCCHHHH
Q 015687 300 LIPALRTVGNIVTGDD--MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GN--VNQIQAIIEAGIIGPL 373 (402)
Q Consensus 300 ~~~a~~~l~nl~~~~~--~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~--~~~~~~l~~~~~i~~L 373 (402)
...++.+|..+...-. .....++ .+--.+..+..+. ++++|..|...++.++. |. .+.....+..+.. ++
T Consensus 317 ~leam~~Lt~v~~~~~~~~l~~~~l--~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~-~l 392 (533)
T KOG2032|consen 317 QLEAMKCLTMVLEKASNDDLESYLL--NIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLA-PL 392 (533)
T ss_pred HHHHHHHHHHHHHhhhhcchhhhch--hHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccc-cc
Confidence 9999998887764211 1111111 2334566677777 99999999998888775 21 2211112233333 34
Q ss_pred HHHhccCCHHHHHHH
Q 015687 374 VNLLLNAEFEIKKEA 388 (402)
Q Consensus 374 ~~ll~~~~~~v~~~a 388 (402)
+-.+++.++.+-.++
T Consensus 393 llhl~d~~p~va~AC 407 (533)
T KOG2032|consen 393 LLHLQDPNPYVARAC 407 (533)
T ss_pred eeeeCCCChHHHHHH
Confidence 444666777655443
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.93 E-value=3.4 Score=38.92 Aligned_cols=265 Identities=12% Similarity=0.091 Sum_probs=134.3
Q ss_pred hcCcHHHHHHhh----cCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHH-hhCCCCHHHHHHHHHHHHHhhC
Q 015687 112 QSGVVPRFIEFL----SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAG 186 (402)
Q Consensus 112 ~~g~i~~L~~lL----~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~ 186 (402)
+.|.+..++..+ .+++ ..++..|+.+|++.+++-|......... .+..++. +....+.+|.-.++.+|..+..
T Consensus 252 ~~~lL~s~~~~la~ka~dp~-a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~ 329 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPS-AKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLE 329 (533)
T ss_pred ccccHHHHHHHHHHhccCch-hHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 345555444444 3445 6889999999999999855544443332 3444444 4455678899999998887764
Q ss_pred CCc--hhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch-hh---hhchHHHHHHhccCCChhHHHH
Q 015687 187 DSP--KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF-EQ---TRPALPALERLIHSNDDEVLTD 260 (402)
Q Consensus 187 ~~~--~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~---~~~~l~~L~~lL~~~~~~v~~~ 260 (402)
... .....++. +...+..+. .+.+++++.++...+..|+........ .+ +.+....++-.+.+.++.+. .
T Consensus 330 ~~~~~~l~~~~l~--ialrlR~l~-~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ 405 (533)
T KOG2032|consen 330 KASNDDLESYLLN--IALRLRTLF-DSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-R 405 (533)
T ss_pred hhhhcchhhhchh--HHHHHHHHH-HhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-H
Confidence 322 12222221 233334444 677888998888888877765422221 11 22222233334455666554 4
Q ss_pred HHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHH---HHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC
Q 015687 261 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL---RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 337 (402)
Q Consensus 261 a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~---~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~ 337 (402)
||......+.-.-.. +.+ .++++... +.+.. +-.++ |++ .+....++....... ...-++++.
T Consensus 406 ACr~~~~~c~p~l~r-ke~--~~~~q~~l----d~~~~-~~q~Fyn~~c~-~L~~i~~d~l~~~~t-----~~~~~f~ss 471 (533)
T KOG2032|consen 406 ACRSELRTCYPNLVR-KEL--YHLFQESL----DTDMA-RFQAFYNQWCI-QLNHIHPDILMLLLT-----EDQHIFSSS 471 (533)
T ss_pred HHHHHHHhcCchhHH-HHH--HHHHhhhh----HHhHH-HHHHHHHHHHH-HHhhhCHHHHHHHHH-----hchhheecc
Confidence 555555544322211 111 12222221 11110 11110 111 111122222222221 233344444
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 338 YKKSIKKEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 338 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
-+.++..+...-.+...+..+...... -.-+...|-.+..++-++++..|..|+.-+..
T Consensus 472 -we~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 472 -WEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred -hHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 566777776666666543222222222 12245566666677889999999999887653
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=94.85 E-value=2.3 Score=36.67 Aligned_cols=202 Identities=19% Similarity=0.184 Sum_probs=119.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHH
Q 015687 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 195 (402)
Q Consensus 116 i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 195 (402)
++.|+.-+....++..+...+..|..++.+..... .-++..|..+.+.+..+.+..+.+.+..+...++..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 34455434444348999999999999998642211 1246667777777777777778888888876654321
Q ss_pred HhcCChHHHHHHh---------ccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhc-cCCChhHHHHHHHHH
Q 015687 196 LSNGALMPLLAQF---------NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWAL 265 (402)
Q Consensus 196 ~~~g~i~~L~~~l---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l 265 (402)
+.+..++..+ ......+.......++..+|...|. ....+++.+..+| +++++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3444444441 1122344555566788899988765 4456778888888 788899999999999
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhcCCC-ChhhHHHHHHHHHHhhcCCh-HHHHHHHhCCChHHHHHHhcCC
Q 015687 266 SYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQN 337 (402)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~-~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~~~l~~L~~ll~~~ 337 (402)
..++...- ++ +. .....+.+.|+.+ .+.+....+..++.+..+.- ..........++..+.++..+.
T Consensus 147 ~~Lc~~~v--vd-~~--s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 147 APLCEAEV--VD-FY--SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHHhh--cc-HH--HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 99994322 11 11 1223344444333 34454444444444433321 1112224446666777777665
|
|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.17 Score=49.19 Aligned_cols=143 Identities=17% Similarity=0.203 Sum_probs=104.5
Q ss_pred chHHHHHHhccC----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCCh
Q 015687 241 PALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 241 ~~l~~L~~lL~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~l~nl~~~~~ 315 (402)
.+-|.+.+...+ +|++++..|.-+|..+-.-+.+... .-+|.++..+. +++|.+|..|.-.+|.++.+-.
T Consensus 892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence 344555555544 6889998888888776543332221 23688888886 8999999999999999987655
Q ss_pred HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 316 ~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
..++.. -..|..-|.+. +..||+.+..++.++.... .+--.|-++.+..+|.++|..+...|-..+..+
T Consensus 967 ~~~de~-----t~yLyrrL~De-~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098 967 TTADEH-----THYLYRRLGDE-DADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred hhhHHH-----HHHHHHHhcch-hhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence 444433 34677778777 8999999999999887531 122257788899999999999999888888887
Q ss_pred hcCC
Q 015687 396 TSGG 399 (402)
Q Consensus 396 ~~~~ 399 (402)
+...
T Consensus 1036 a~Kd 1039 (1128)
T COG5098 1036 AKKD 1039 (1128)
T ss_pred Hhcc
Confidence 7654
|
|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.77 E-value=5 Score=40.15 Aligned_cols=315 Identities=12% Similarity=0.090 Sum_probs=177.4
Q ss_pred HHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHhh--cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 73 LPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQ--SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 73 i~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
...+++.++.+ |..++..++..++-++..- +-.-+.+.. ......+.+++..-..-+.+...+..|+-+.....+.
T Consensus 528 Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~ 606 (978)
T KOG1993|consen 528 YCAFLNLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH 606 (978)
T ss_pred HHHHHHhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 46777888875 7788888999998887543 222222221 2233444455544322455667777777666543333
Q ss_pred hHHHHhCCchHHHHHhh--CCCCHHHHHHHHHHHHHhhCC----CchhhHHHHhcCChHHHHHHhcc---chhhHHHHHH
Q 015687 150 TRVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGD----SPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNA 220 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~----~~~~~~~~~~~g~i~~L~~~l~~---~~~~~~~~~a 220 (402)
...... .++..|-.+= .++.+-++.+.+.+|.|+... ++.+.. ++-+++.+-.+ .++.-+.+.+
T Consensus 607 I~P~~~-~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv~L~EDg 679 (978)
T KOG1993|consen 607 IAPYAS-TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHVYLLEDG 679 (978)
T ss_pred hhHHHH-HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCceeehhhhH
Confidence 221110 1122222221 225566788888888888622 221111 22333443312 2233455666
Q ss_pred HHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHH-HHhccCChHHHHHHHHhCcHHHHHHhcCCCChhh
Q 015687 221 TWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299 (402)
Q Consensus 221 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l-~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v 299 (402)
.........+.+.-. ...-.++|.++..+..+.+.+. -++.++ +|+.-.+... -.....|++..+..++.+-..+-
T Consensus 680 meLW~~~L~n~~~l~-p~ll~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~f-l~~y~~~i~k~~~~~l~dvr~eg 756 (978)
T KOG1993|consen 680 MELWLTTLMNSQKLT-PELLLLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVF-LNDYAFGIFKKLNDLLDDVRNEG 756 (978)
T ss_pred HHHHHHHHhcccccC-HHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHHHHhhHHH
Confidence 666555555543322 2335678888888865544433 334444 3333223222 22344588888999887666666
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHH---
Q 015687 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLV--- 374 (402)
Q Consensus 300 ~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~--- 374 (402)
....+.++-.+...++ ........+++|.+..-+- ....|.+...-..+++.+.--+++....+++ ..-...++
T Consensus 757 l~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~l 835 (978)
T KOG1993|consen 757 LQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAML 835 (978)
T ss_pred HHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHHH
Confidence 6677777777776555 3444556688888887552 2226777778888888888777887777764 22222333
Q ss_pred -----HHhcc-CCHHHHHHHHHHHHHhhcCC
Q 015687 375 -----NLLLN-AEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 375 -----~ll~~-~~~~v~~~a~~aL~nl~~~~ 399 (402)
.+..+ .+++-|+--+-|+..+...|
T Consensus 836 i~~WI~~~~~I~~~k~rKl~~LalsSll~t~ 866 (978)
T KOG1993|consen 836 IGNWILLFDHINHPKDRKLNTLALSSLLRTN 866 (978)
T ss_pred HHHHHHHcccCCCHHHhhHHHHHHHHHhccC
Confidence 33332 56788888888888776654
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.77 E-value=1.9 Score=41.12 Aligned_cols=157 Identities=12% Similarity=0.142 Sum_probs=111.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCC---HHHHHHHHHHHHHhhcCCCcc
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF---PQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~---~~~~~~a~~~L~~l~~~~~~~ 149 (402)
...+.+.+.+++...+..|+..+..+ |.+ .....+++...++..|.+++.+++. .++....+.++..+..+.- .
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sl-s~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-v 161 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSL-SLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-V 161 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhc-ccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-e
Confidence 46788899999999998888888887 432 5566889999999999999988762 3556666666666655422 1
Q ss_pred hHHHHhCCchHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 150 TRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
.=..+....|.....+.+ ..+..+-..|+..|-++...++..++.+.+.--+..++..+ +..+..++..|...+..+
T Consensus 162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHHH
Confidence 111112223333333332 34566778889999999888887888998888899999999 667777777777777777
Q ss_pred hhCCCC
Q 015687 228 CRGKPQ 233 (402)
Q Consensus 228 ~~~~~~ 233 (402)
....|.
T Consensus 241 ~~~a~~ 246 (713)
T KOG2999|consen 241 FRKAPD 246 (713)
T ss_pred HhhCCh
Confidence 776543
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.72 Score=37.80 Aligned_cols=113 Identities=17% Similarity=0.128 Sum_probs=78.5
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHh----c---------------CChHHHHHHhccchhhHHHHH
Q 015687 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS----N---------------GALMPLLAQFNEHAKLSMLRN 219 (402)
Q Consensus 159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~----~---------------g~i~~L~~~l~~~~~~~~~~~ 219 (402)
.+.+.-++.++++.+|..|+.++..+..+...+-...-+ . ..-..|+..+....+..+...
T Consensus 42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q 121 (182)
T PF13251_consen 42 PSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQ 121 (182)
T ss_pred cchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 344445778899999999999999987554322111110 0 123344555555667888889
Q ss_pred HHHHHHHhhhCCCCCc--hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC
Q 015687 220 ATWTLSNFCRGKPQPL--FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (402)
Q Consensus 220 a~~~L~~l~~~~~~~~--~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 271 (402)
++.++..|...-|... ......++..+..++.+.|.+++..++.+++.+...
T Consensus 122 ~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 122 LLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 9999999998865433 344466777777888899999999999998887644
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.28 Score=35.18 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=63.8
Q ss_pred hHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 015687 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 280 (402)
Q Consensus 201 i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 280 (402)
+...+..+ .++.+.++..+...|..|..... ........++..+...|+++|+.|--+|+.+++.|+...++.
T Consensus 5 ~~~al~~L-~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~----- 77 (92)
T PF10363_consen 5 LQEALSDL-NDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE----- 77 (92)
T ss_pred HHHHHHHc-cCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH-----
Confidence 34455556 67788899999999999998865 344455788889999999999999999999999999766542
Q ss_pred HhCcHHHHHHhcC
Q 015687 281 EAGVCPRLVELLR 293 (402)
Q Consensus 281 ~~~~i~~L~~~L~ 293 (402)
+++.|++...
T Consensus 78 ---vl~~L~~~y~ 87 (92)
T PF10363_consen 78 ---VLPILLDEYA 87 (92)
T ss_pred ---HHHHHHHHHh
Confidence 3455555543
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=94.55 E-value=2.8 Score=36.20 Aligned_cols=203 Identities=17% Similarity=0.191 Sum_probs=116.0
Q ss_pred hHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchh
Q 015687 159 VPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 237 (402)
Q Consensus 159 i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 237 (402)
++.|+. +-+..++++....+.+|..++.....+... ++..+..+. ..++......+...+..+-...+ ..+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~~-r~f- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLV-EQGSLELRYVALRLLTLLWKAND-RHF- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHH-cCCchhHHHHHHHHHHHHHHhCc-hHH-
Confidence 344555 455688999999999999999876212222 233444444 44444444445555555554422 222
Q ss_pred hhhchHHHHHHh-----c---c--CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHH
Q 015687 238 QTRPALPALERL-----I---H--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRT 306 (402)
Q Consensus 238 ~~~~~l~~L~~l-----L---~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L-~~~~~~v~~~a~~~ 306 (402)
+.+..++.. . . +...+.......++..+|...++. ...+++.+..+| .+.++.++..++.+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 222222222 1 1 122344555566777787666552 224577888888 78888899999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHhccCCHH
Q 015687 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIGPLVNLLLNAEFE 383 (402)
Q Consensus 307 l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~ 383 (402)
+..+|...--... .....+.+-+..+..|.+.+..|..+..+..+ +.+. .......++..+.+...+.+.+
T Consensus 146 l~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~-~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 146 LAPLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEE-YEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred HHHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhh-hhHHHHHHHHHHHhhccccccc
Confidence 9999943221111 22334555555555677777666656555543 2222 2334455788888888776643
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.19 Score=36.11 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=58.3
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015687 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359 (402)
Q Consensus 285 i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 359 (402)
+...+..+.++.+.+|..++..|+.++.... ....-..+++..+...|+++ ++-|--.|+.+|+.++...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH
Confidence 4567778889999999999999999998766 11122237788888999999 999999999999999986555
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.49 E-value=1.8 Score=42.47 Aligned_cols=186 Identities=15% Similarity=0.098 Sum_probs=114.4
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhcCC-C----cchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 015687 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGT-S----ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191 (402)
Q Consensus 117 ~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~-~----~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 191 (402)
|.|..-|+-.+ ..+|..|+..+.+.---. + +..+.+++. -...+-.+|+++-+.+|..|..-+..+...-.+.
T Consensus 177 p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 177 PILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 34444555666 799999999998875321 2 223445543 3678889999999999998888777765331111
Q ss_pred --hHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhc
Q 015687 192 --RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (402)
Q Consensus 192 --~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~ 269 (402)
...+.+ .+..+..-+..++..+++......|..+..++ ........++|.+-..|+++...|+.++...|..+-
T Consensus 255 iP~~i~~~--ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 255 IPPTILID--LLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred cCHHHHHH--HHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 011111 23333344444556678888888888887662 233445677888888889999999999988887775
Q ss_pred cCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 015687 270 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (402)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~ 311 (402)
....-. +.+---.+.++.-|..++..+...-+..|-+.+
T Consensus 331 ~vra~~---f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 331 AVRAAK---FWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred hhhhhh---hhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 432211 211112344555565555555555555555544
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=94.43 E-value=3.2 Score=36.44 Aligned_cols=221 Identities=15% Similarity=0.114 Sum_probs=131.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc-chhhHHHHHHHHHHHHhhhCCCCCchhh
Q 015687 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQ 238 (402)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 238 (402)
..|-..|.++++.+|..|+..|+.+...-+.. .+...-+..|+..+.. -.|......++.++..|.... ......
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~ 77 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPES 77 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhh
Confidence 34566788999999999999999988665521 1222235555555422 235555656677777777543 222222
Q ss_pred hhchHHHHHHhcc--CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHHHhhcCCh
Q 015687 239 TRPALPALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 239 ~~~~l~~L~~lL~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-~~~~v~~~a~~~l~nl~~~~~ 315 (402)
...++..+.+-.+ .-....|..+...+..+.....+..+. ...+.+..++..+.. .||.-...+...+..+...-+
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 3344444443322 224567888888888887654433321 223566777777754 467666677777776665433
Q ss_pred HHHHHHHhCCChHHHHHHhc--------CC-Cch--hHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 015687 316 MQTQCIINHQALPCLLDLLT--------QN-YKK--SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384 (402)
Q Consensus 316 ~~~~~i~~~~~l~~L~~ll~--------~~-~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 384 (402)
. ....+.+...+. .+ .+| -.+..-...|.+....++... .-.+|.|++-|.++.+.+
T Consensus 157 ~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~ 224 (262)
T PF14500_consen 157 I-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSV 224 (262)
T ss_pred c-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHH
Confidence 1 222333333332 11 122 234455555655555444432 237899999999999999
Q ss_pred HHHHHHHHHHhhc
Q 015687 385 KKEAAWAISNATS 397 (402)
Q Consensus 385 ~~~a~~aL~nl~~ 397 (402)
+..++.+|..++.
T Consensus 225 K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 225 KLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.82 Score=46.10 Aligned_cols=196 Identities=18% Similarity=0.202 Sum_probs=120.4
Q ss_pred HHHHhhcCCCcchHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChH--HHHHHhccchhh
Q 015687 138 ALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM--PLLAQFNEHAKL 214 (402)
Q Consensus 138 ~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~--~L~~~l~~~~~~ 214 (402)
+|.++...+++....+++.|++..+...++. ...+++..++..++|++...+ .+........+. .+-..+....+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~-~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLE-LRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 6668888889999999999999999999985 678899999999999986554 222222222222 333344445555
Q ss_pred HHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-
Q 015687 215 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR- 293 (402)
Q Consensus 215 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~- 293 (402)
+.-..++..|+.+..+.+...... . -+.+......++.+...... ......-..+.+..++.
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~---~-----------r~~~~~~l~e~i~~~~~~~~---~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECV---F-----------RNSVNELLVEAISRWLTSEI---RVINDRSFFPRILRILRL 635 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCcccc---c-----------hHHHHHHHHHHhhccCccce---eehhhhhcchhHHHHhcc
Confidence 777888888888877643211000 0 01112222222222221111 11111111121444443
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 015687 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (402)
Q Consensus 294 ~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 351 (402)
+..+..+..|++++.+++...+++...+.+.++++.+.++-.......++.++...+-
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 3456678999999999999988888888999999988887765534455555554443
|
|
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=94.28 E-value=4.8 Score=37.85 Aligned_cols=191 Identities=13% Similarity=0.133 Sum_probs=118.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhcCCC---cchHHHHhCCchHHHHHhhCC-------CCHHHHHHHHHHHHHhhC
Q 015687 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTS---ENTRVVIDHGAVPIFVRLLSS-------PTDDVREQAVWALGNVAG 186 (402)
Q Consensus 117 ~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~g~i~~L~~lL~~-------~~~~v~~~a~~~L~nl~~ 186 (402)
..+..++...+ ++-++.|+...+..+.+.+ .++..+.++-+++.+-+++.+ ++...+..++..|.-+|.
T Consensus 14 ~~~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 14 DDCLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhHHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 33566666666 6789999999999988643 245667887778989998865 345667788888888887
Q ss_pred CCchh-hHHHHhcCChHHHHHHhccchhhH------HHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCC----h
Q 015687 187 DSPKC-RDLVLSNGALMPLLAQFNEHAKLS------MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND----D 255 (402)
Q Consensus 187 ~~~~~-~~~~~~~g~i~~L~~~l~~~~~~~------~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~----~ 255 (402)
+.+-. ...+++ .||.|+..+.+..|++ +...+..+|..++...+........|.++.+.++-.-.+ .
T Consensus 93 ~pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ 170 (698)
T KOG2611|consen 93 VPELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDM 170 (698)
T ss_pred ChhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhH
Confidence 65421 233333 6889999986655544 788899999999988666666666899999987654332 2
Q ss_pred hHHHHHHHHH-HHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 015687 256 EVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 256 ~v~~~a~~~l-~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~ 313 (402)
.+.--++..+ +.+-..++. +..+.. ++..+..-+...+....-..|+.+..+...
T Consensus 171 alal~Vlll~~~~~~cw~e~-~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~~ 226 (698)
T KOG2611|consen 171 ALALKVLLLLVSKLDCWSET-IERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLSS 226 (698)
T ss_pred HHHHHHHHHHHHhcccCcCC-HHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHhC
Confidence 2222221111 111122221 122221 133343334444455666777888765543
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.49 Score=38.34 Aligned_cols=111 Identities=21% Similarity=0.218 Sum_probs=79.7
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC--CChHHHHHHhcCCCchhHHHHHHHHHHHHhc---CC
Q 015687 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLLTQNYKKSIKKEACWTISNITA---GN 357 (402)
Q Consensus 283 ~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~--~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~ 357 (402)
..+.++..+|.+.++.-+-.++..++.++..++. +.+.+. ..+..++.+|+.+..+.+++.++.++..|.. +.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3567888999998888899999999988876532 223232 5688899999887677889999999998885 55
Q ss_pred HHHHHHHHHc---CCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 358 VNQIQAIIEA---GIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 358 ~~~~~~l~~~---~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
++-.+.+... ++++.++.+++. ......++.+|..+..
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 6655555432 345666666654 5677788888877754
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.66 Score=44.41 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=80.3
Q ss_pred hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 015687 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 236 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~ 315 (402)
...+.+.+..++..+.+.|..|+..+|.+|+.+.+.-.+ ++..+-.|++..|.+-+.+..+.||..|+.+|+.+-..+.
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 456678888888888999999999999999998865443 3556667888999998989999999999999988864322
Q ss_pred HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHH
Q 015687 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT 349 (402)
Q Consensus 316 ~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~ 349 (402)
.-.. .+...|..+++..++.+||..|..-
T Consensus 165 neen-----~~~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 165 NEEN-----RIVNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred ChHH-----HHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1111 2233566777766577888876443
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=94.18 E-value=2 Score=42.65 Aligned_cols=135 Identities=20% Similarity=0.196 Sum_probs=80.6
Q ss_pred chHHHHHHhccCC----ChhHHHHHHHHHHHhcc----CChHHHHHHHHhCcHHHHHHhc----CCCChhhHHHHHHHHH
Q 015687 241 PALPALERLIHSN----DDEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELL----RHPSPSVLIPALRTVG 308 (402)
Q Consensus 241 ~~l~~L~~lL~~~----~~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~i~~L~~~L----~~~~~~v~~~a~~~l~ 308 (402)
..+..+..++.++ .+.+...++-+++.+.. ..+.. ...+-..+++.+...| ...+...+..++++||
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC-PDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 4455666666543 45677777777766642 22110 0111122445555544 3445566788999999
Q ss_pred HhhcCChHHHHHHHhCCChHHHHHHhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHH
Q 015687 309 NIVTGDDMQTQCIINHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEI 384 (402)
Q Consensus 309 nl~~~~~~~~~~i~~~~~l~~L~~ll~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v 384 (402)
|+.... .++.+..++. ...+..+|..|+|+|..++...+..++ +.|+.++.+ .++++
T Consensus 472 N~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~Ev 532 (574)
T smart00638 472 NAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEV 532 (574)
T ss_pred ccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHH
Confidence 987532 2344555554 112568999999999999875555433 345555544 56789
Q ss_pred HHHHHHHHHHh
Q 015687 385 KKEAAWAISNA 395 (402)
Q Consensus 385 ~~~a~~aL~nl 395 (402)
|..|..+|...
T Consensus 533 RiaA~~~lm~t 543 (574)
T smart00638 533 RMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHhc
Confidence 99888877643
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.56 Score=38.82 Aligned_cols=83 Identities=12% Similarity=0.140 Sum_probs=62.6
Q ss_pred cCChHHHHHHHHhCcHHHHHHhcC---------CCChhhHHHHHHHHHHhhcCChHHHHHHHh-CCChHHHHHHhcCCCc
Q 015687 270 DGTNDKIQAVIEAGVCPRLVELLR---------HPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYK 339 (402)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~L~~~L~---------~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~-~~~l~~L~~ll~~~~~ 339 (402)
..+...++.+++.|++..|+.+|. ..+......+++|+..++.... ....+++ .+++..|...|.++ +
T Consensus 94 t~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~-G~~~v~~~~~~v~~i~~~L~s~-~ 171 (187)
T PF06371_consen 94 TNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKY-GLEAVLSHPDSVNLIALSLDSP-N 171 (187)
T ss_dssp HS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHH-HHHHHHCSSSHHHHHHHT--TT-S
T ss_pred cCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHH-HHHHHHcCcHHHHHHHHHHCCC-C
Confidence 455567888999999999999873 1345677889999988886544 4555665 58899999999988 9
Q ss_pred hhHHHHHHHHHHHHh
Q 015687 340 KSIKKEACWTISNIT 354 (402)
Q Consensus 340 ~~v~~~a~~~L~nl~ 354 (402)
..+|..++-+|+.+|
T Consensus 172 ~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 172 IKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999886
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal | Back alignment and domain information |
|---|
Probab=93.88 E-value=4.2 Score=35.67 Aligned_cols=216 Identities=18% Similarity=0.129 Sum_probs=117.8
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhccCC--CC-chhHHh-----------hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 015687 77 VAGVWSDDRNIQLDATTQFRKLLSIER--SP-PINEVI-----------QSGVVPRFIEFLSRDDFPQLQFEAAWALTNI 142 (402)
Q Consensus 77 ~~~l~s~~~~~~~~a~~~l~~l~s~~~--~~-~~~~~~-----------~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l 142 (402)
+.+|.+..+..-..|+..+.++++.-+ .+ ..+.+. -.|+.+.+++=+.++. ....++..|..+
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L 89 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL 89 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence 446666666666667777776655421 11 111111 1233333444444443 344555666665
Q ss_pred hcCC-------CcchHHHHhCCchHHHHHhhCCCC----HHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccc
Q 015687 143 ASGT-------SENTRVVIDHGAVPIFVRLLSSPT----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH 211 (402)
Q Consensus 143 ~~~~-------~~~~~~~~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~ 211 (402)
+... ++.+-.+.=.+.+|.++.-+++++ ......++..|+.+|.... ...+..++....++
T Consensus 90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~ 161 (262)
T PF14225_consen 90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG 161 (262)
T ss_pred hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence 5431 222222222356778888777766 2344466788888874322 12344445444333
Q ss_pred hhhHHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 015687 212 AKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 290 (402)
Q Consensus 212 ~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ 290 (402)
.-.+.......+...++... |. .....+-.+..+|.+.-+.++..++.+|..+....+-... ...+++..+.+
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~P~----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispllr 235 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFFPD----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPLLR 235 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHHHH
Confidence 22222233333334444432 32 2245667788899888899999999999998765443322 44567888999
Q ss_pred hcCCCChhhHHHHHHHHHHhhc
Q 015687 291 LLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 291 ~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
++..+-. ..|+.++-++..
T Consensus 236 lL~t~~~---~eAL~VLd~~v~ 254 (262)
T PF14225_consen 236 LLQTDLW---MEALEVLDEIVT 254 (262)
T ss_pred HhCCccH---HHHHHHHHHHHh
Confidence 9876653 456666655543
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=93.62 E-value=2.9 Score=34.36 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=78.9
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC
Q 015687 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 324 (402)
Q Consensus 245 ~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~ 324 (402)
.+..++.++++.++..|+.++..|.++........-+.+ ...... .+--..+|.+..
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~----------~~~~sF-tslS~tLa~~i~------------ 100 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESK----------GPSGSF-TSLSSTLASMIM------------ 100 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcC----------CCCCCc-ccHHHHHHHHHH------------
Confidence 344455677888888888888888877654332222111 111111 111222333222
Q ss_pred CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC----HHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI----IGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 325 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~----i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
.+-..|+..|+.+.+..+....+.++..+...+|.+.-. .|+ +..+..++.+.|.+++..+..+++.+.+..
T Consensus 101 ~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~---~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 101 ELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLP---PGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcC---HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 122346666766657788889999999999876665432 234 455555667789999999999998887643
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.45 Score=41.77 Aligned_cols=145 Identities=15% Similarity=0.190 Sum_probs=91.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhh
Q 015687 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238 (402)
Q Consensus 159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 238 (402)
+...+..|.+.+.+...-++..+..|+...++.....+.. .+..+++-+ ++....+-+.||.++..+...........
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666777777765554332222221 455556666 66777888999999998887743332222
Q ss_pred hhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 239 ~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
...++-.|..--..++.-|++++-.+|..+..+.... .+++.|+..+.+.++.++..++.++.+...
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccce
Confidence 2333333222223345678999999999888665432 246788888999999998888877766654
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=93.47 E-value=1.1 Score=36.04 Aligned_cols=146 Identities=11% Similarity=0.105 Sum_probs=86.7
Q ss_pred hchHHHHHHhccCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHHHHHhhcCChHH
Q 015687 240 RPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQ 317 (402)
Q Consensus 240 ~~~l~~L~~lL~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L-~~~~~~v~~~a~~~l~nl~~~~~~~ 317 (402)
..+++.|..+|+++ +..++..++++++.|..-++...+.+... . + ..- ...........+...+ .....++.
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~-~-~---~~~~~~~~~~~~~~~l~~~~-~~~~~ee~ 82 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS-L-D---SKSSENSNDESTDISLPMMG-ISPSSEEY 82 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc-C-C---ccccccccccchhhHHhhcc-CCCchHHH
Confidence 57788888999765 68999999999999987777554422111 0 1 000 1111222222222222 21122222
Q ss_pred HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 318 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 318 ~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
.. ..++..|+.+|+++.-..-...++.++.++... ...+ -..+.. ++|.+++.+...+...++.-.+-|+.+.
T Consensus 83 y~----~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~-viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 83 YP----TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQ-VIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 22 234567888887763344455677777777742 1222 333333 8999999999877788888888888775
Q ss_pred c
Q 015687 397 S 397 (402)
Q Consensus 397 ~ 397 (402)
.
T Consensus 157 ~ 157 (160)
T PF11865_consen 157 S 157 (160)
T ss_pred H
Confidence 3
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.46 E-value=1.1 Score=44.12 Aligned_cols=134 Identities=18% Similarity=0.121 Sum_probs=97.0
Q ss_pred CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCc
Q 015687 156 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235 (402)
Q Consensus 156 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 235 (402)
..++|.|..-+++.+..+++.++..+..++..-+ -..+..-++|.+-.+.....+..++.+++-++..+... .+
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~---lD 461 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR---LD 461 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH---HH
Confidence 3577888888888999999999999999986543 13344557788888776788999999999999998833 22
Q ss_pred hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC
Q 015687 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296 (402)
Q Consensus 236 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~ 296 (402)
...+...++.+....+..|+.+....+.+...+....... ..+....++|.++.+...+.
T Consensus 462 ~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 462 KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 2223344455566667789999998888888776443332 34556678899888876554
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.56 Score=47.11 Aligned_cols=152 Identities=19% Similarity=0.207 Sum_probs=84.2
Q ss_pred HHHHHHHhhhCCCCCchhhhhchHHHHHHhccC----CChhHHHHHHHHHHHhcc---CCh------HHHHHHHHhCcHH
Q 015687 220 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHS----NDDEVLTDACWALSYLSD---GTN------DKIQAVIEAGVCP 286 (402)
Q Consensus 220 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~----~~~~v~~~a~~~l~~l~~---~~~------~~~~~~~~~~~i~ 286 (402)
+...|..+......+.. ..+..+..++.+ .++.+...++-+++.+.. ... ......+...+++
T Consensus 414 a~~~l~~l~~~~~~Pt~----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~ 489 (618)
T PF01347_consen 414 AAQLLASLPFHVRRPTE----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVP 489 (618)
T ss_dssp HHHHHHHHHHT-----H----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTH
T ss_pred HHHHHHHHHhhcCCCCH----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHH
Confidence 44445555544323333 334444455543 356677777777776642 110 0001112223455
Q ss_pred HHHHhcC----CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC--CchhHHHHHHHHHHHHhcCCHHH
Q 015687 287 RLVELLR----HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN--YKKSIKKEACWTISNITAGNVNQ 360 (402)
Q Consensus 287 ~L~~~L~----~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~--~~~~v~~~a~~~L~nl~~~~~~~ 360 (402)
.+...+. ..+...+..++++|||+.. + ..++.+..++... ....+|..|+|+|..++...++.
T Consensus 490 ~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~ 558 (618)
T PF01347_consen 490 YLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK 558 (618)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH
Confidence 5555553 4566778899999999964 2 3456666666544 25689999999999998777765
Q ss_pred HHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHH
Q 015687 361 IQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISN 394 (402)
Q Consensus 361 ~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~n 394 (402)
+. +.|+.++.+ .++++|..|..+|..
T Consensus 559 v~--------~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 559 VR--------EILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HH--------HHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HH--------HHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 43 455666654 567899888877764
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=93.43 E-value=3.7 Score=38.05 Aligned_cols=228 Identities=16% Similarity=0.146 Sum_probs=119.5
Q ss_pred hHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh-CCCCCch
Q 015687 159 VPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLF 236 (402)
Q Consensus 159 i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~-~~~~~~~ 236 (402)
+.+++.=+. +....+|..++--|+.-+.+. .++..+..+|....+++.+...++..+...++.++..+.. +.+....
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~-~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADP-QFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCH-HHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 455555444 345678888888888887754 4899999999999999999555554355555445544444 4344444
Q ss_pred hhhhchHHHHHHhccCC---C--hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc---------CCCChhhHHH
Q 015687 237 EQTRPALPALERLIHSN---D--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---------RHPSPSVLIP 302 (402)
Q Consensus 237 ~~~~~~l~~L~~lL~~~---~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L---------~~~~~~v~~~ 302 (402)
.........+..++.-+ + ......-...+.... + +.+..+.+.+ .+....-+..
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~-------~-----~~~~~~~~~~~~~~~~~~~~~~~lsp~~l 169 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQ-------Q-----KSRSLCKELLSSGSSWKSPKPPELSPQTL 169 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchhhhhhhhhhHHH-------H-----HHHHHHHHHHhccccccccCCcccccccH
Confidence 33355566666666511 1 000000000011100 0 1111122222 1223345566
Q ss_pred HHHHHHHhhcC--------------ChHHHHHHHhCCChHHHHHHhcC----CC------c-----hhHHHHHHHHHHHH
Q 015687 303 ALRTVGNIVTG--------------DDMQTQCIINHQALPCLLDLLTQ----NY------K-----KSIKKEACWTISNI 353 (402)
Q Consensus 303 a~~~l~nl~~~--------------~~~~~~~i~~~~~l~~L~~ll~~----~~------~-----~~v~~~a~~~L~nl 353 (402)
|+.++-.++.. .+...+.+.+.|+++.++.++.. .. . ...-..+.++|=|.
T Consensus 170 all~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~ 249 (361)
T PF07814_consen 170 ALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESV 249 (361)
T ss_pred HHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHH
Confidence 77776666411 01123445566889999988852 10 1 11234566777777
Q ss_pred hcCCHHHHHHHHH--cCCHHHHHHH----hccCCHHHHHHHHHHHHHhhcCC
Q 015687 354 TAGNVNQIQAIIE--AGIIGPLVNL----LLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 354 ~~~~~~~~~~l~~--~~~i~~L~~l----l~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
+..+.++...++. .+.++.+... .......+...++..+.|++.+.
T Consensus 250 T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n 301 (361)
T PF07814_consen 250 TFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN 301 (361)
T ss_pred HhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC
Confidence 7655554445543 2233332222 22233445677888888887654
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.30 E-value=4 Score=39.02 Aligned_cols=155 Identities=14% Similarity=0.137 Sum_probs=110.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccch---hhHHHHHHHHHHHHhhhCCCCCc
Q 015687 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPL 235 (402)
Q Consensus 159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~ 235 (402)
...+...+.+++..-+..+...|..++.+.. +...++...++..|..++.+.. ..++....+.+++.+-.+.- ..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs 162 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPT-FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS 162 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence 4456667777777777778888888887765 5677788888999999985443 45677788888888776642 11
Q ss_pred hhhh-hchHHHHHHh--ccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 236 FEQT-RPALPALERL--IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 236 ~~~~-~~~l~~L~~l--L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
.... ..++-....+ .+..+..+...|+..+-++.-+++...+.+.+.--++.|+..+...+..++..|+..+..+..
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 1111 1222222222 233467788899999999888888777778888889999999999998899888888887776
Q ss_pred CCh
Q 015687 313 GDD 315 (402)
Q Consensus 313 ~~~ 315 (402)
..+
T Consensus 243 ~a~ 245 (713)
T KOG2999|consen 243 KAP 245 (713)
T ss_pred hCC
Confidence 544
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=13 Score=41.87 Aligned_cols=276 Identities=13% Similarity=0.063 Sum_probs=144.9
Q ss_pred CCCHHHHHHHHHHHHHHhccC--CCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCC--
Q 015687 82 SDDRNIQLDATTQFRKLLSIE--RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG-- 157 (402)
Q Consensus 82 s~~~~~~~~a~~~l~~l~s~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g-- 157 (402)
+.+..+...|+..|+++...- ..+....-.+..++..|..++.+..+.+++...+.|+.++..... .-+..|
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkSGWk 1223 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKSGWK 1223 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhcCcH
Confidence 345678888888888864421 111111122345678888877766558999999999998876422 222334
Q ss_pred -chHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-h----hHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHh----
Q 015687 158 -AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-C----RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF---- 227 (402)
Q Consensus 158 -~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~----~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l---- 227 (402)
++..|.....+.++.+.+.|..++..++.+.-. . .+.+.+ .+..+.....+..+..+--.++..|+++
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~D--lV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTD--CVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHH--HHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 233333333457788999999988887654211 0 011111 3444444443333333333444444433
Q ss_pred hhCC----------C-------------CC------ch---hhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC----
Q 015687 228 CRGK----------P-------------QP------LF---EQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---- 271 (402)
Q Consensus 228 ~~~~----------~-------------~~------~~---~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~---- 271 (402)
.... . .. .. ..--.++..|..+..++.++|+..|+.+|..+...
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 1110 0 00 00 01122333444555677899999999988776532
Q ss_pred -ChHHHHHHHHhCcHHHHHHhcCCC------------------C-h----hhHHHHHHHHHHhhcCChHHH---HHHHhC
Q 015687 272 -TNDKIQAVIEAGVCPRLVELLRHP------------------S-P----SVLIPALRTVGNIVTGDDMQT---QCIINH 324 (402)
Q Consensus 272 -~~~~~~~~~~~~~i~~L~~~L~~~------------------~-~----~v~~~a~~~l~nl~~~~~~~~---~~i~~~ 324 (402)
+.+....++. +++-+++..+++. + . -..+.+..++.+++.--..+. ..+++
T Consensus 1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~- 1459 (1780)
T PLN03076 1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK- 1459 (1780)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 2233333333 4555555554311 0 0 123444444444443222222 22222
Q ss_pred CChHHHHHHhcCCCchhHHHHHHHHHHHHhc-----CCHHHHHHHHH
Q 015687 325 QALPCLLDLLTQNYKKSIKKEACWTISNITA-----GNVNQIQAIIE 366 (402)
Q Consensus 325 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-----~~~~~~~~l~~ 366 (402)
+++..|...+..+ +..+-+.++.+|.++.. -++++...+++
T Consensus 1460 ~~l~ll~~ci~q~-n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~ 1505 (1780)
T PLN03076 1460 KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVL 1505 (1780)
T ss_pred HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 4555555666666 78888888888888875 25666655544
|
|
| >KOG1822 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.17 E-value=13 Score=41.25 Aligned_cols=230 Identities=13% Similarity=0.112 Sum_probs=129.7
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-CCCc
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL 235 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 235 (402)
-.+..++..+..+++..+..+..+++.++...+.. . .-.+..+.++..+....|+-.+....-++..+-++. ....
T Consensus 876 ~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~-f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s 952 (2067)
T KOG1822|consen 876 SALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--P-FVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS 952 (2067)
T ss_pred HHHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--c-hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 34566666777789999999999999998654421 1 112356667777766667766767777777777765 3344
Q ss_pred hhhhhchHHHHHHhccCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCh---hhHH----------
Q 015687 236 FEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP---SVLI---------- 301 (402)
Q Consensus 236 ~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~---~v~~---------- 301 (402)
.......+..+..+..++ +|.|+..++.++..+.+.........++. -+..+..+|-+..+ ++..
T Consensus 953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~-tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~ 1031 (2067)
T KOG1822|consen 953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP-TLSLCLKLLLSVPTSHVEVHQCYNRCFNGDD 1031 (2067)
T ss_pred chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH-HHHHHHHHcCCCCcchhhhhhhhccccccch
Confidence 444556677777777665 56999999999999986554443333332 23334444432211 1111
Q ss_pred ---HHHHHHHHhhcCChH--HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Q 015687 302 ---PALRTVGNIVTGDDM--QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL 376 (402)
Q Consensus 302 ---~a~~~l~nl~~~~~~--~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l 376 (402)
....++|+=..++.. .+.. +..-.+-...-++.++ ++-++.++..++-++-...|.+... .-+++.|..+
T Consensus 1032 ~~~alittlgpeL~~N~~~d~t~~-~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~ 1106 (2067)
T KOG1822|consen 1032 DEDALITTLGPELGPNGDKDSTST-LRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSL 1106 (2067)
T ss_pred hHHHHHHhcccccCCCCcccchhH-HHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHH
Confidence 222233333322221 1111 1111222333344555 8889999999999887644432211 1146666666
Q ss_pred hccCCHHHHHHHHHHHHHh
Q 015687 377 LLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 377 l~~~~~~v~~~a~~aL~nl 395 (402)
+.+...-.|.....++..+
T Consensus 1107 l~s~~~i~r~~~~~clrql 1125 (2067)
T KOG1822|consen 1107 LSSSYLILRRASFSCLRQL 1125 (2067)
T ss_pred hcchhhhhhhhHHhhhhHH
Confidence 6655444444444444433
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.92 E-value=1.8 Score=41.65 Aligned_cols=100 Identities=16% Similarity=0.149 Sum_probs=72.1
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHH
Q 015687 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQ 360 (402)
Q Consensus 283 ~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~ 360 (402)
|.+..++..+.+.+..||..++.+|+.+...-.+ ++..+-.|++..|..-+-+. .+.||.+|+.+|+.+-. +++++
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDR-EKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhccCChHH
Confidence 5677777788889999999999999988764432 33344447777888777777 88999999999999875 45553
Q ss_pred HHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHH
Q 015687 361 IQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWA 391 (402)
Q Consensus 361 ~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~a 391 (402)
. +...|..+++. ++.+||..|+--
T Consensus 169 ~-------~~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 169 R-------IVNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred H-------HHHHHHHHHhcCcHHHHHHHHHHH
Confidence 2 33456666654 556888876543
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.98 Score=41.83 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=85.1
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhcc------CCChhHHHHHHHHHHH
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------SNDDEVLTDACWALSY 267 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~v~~~a~~~l~~ 267 (402)
.+.+..-.+.+=.-+..+....-++.|+..+..|++..+......+.+ .+..++. +.+..-...|+..++.
T Consensus 205 ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~---~i~~~l~~y~~~~~~~w~~KD~Al~Li~a 281 (370)
T PF08506_consen 205 ELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQ---YIQQLLQQYASNPSNNWRSKDGALYLIGA 281 (370)
T ss_dssp HHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence 344444555555555333345567888899999997633222222222 2333332 2456667778888888
Q ss_pred hccCChH------------HHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc
Q 015687 268 LSDGTND------------KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT 335 (402)
Q Consensus 268 l~~~~~~------------~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~ 335 (402)
++..... .+..+....++|.|. -=.+..+-++..|++.+..+-..-+. +.+ .+++|.++..|.
T Consensus 282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~~l~~~L~ 356 (370)
T PF08506_consen 282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFPLLVNHLQ 356 (370)
T ss_dssp HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHHHHHHHTT
T ss_pred HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHHHHHHHhC
Confidence 8754321 223455555666555 11234566888899998887664332 112 258999999999
Q ss_pred CCCchhHHHHHHHHH
Q 015687 336 QNYKKSIKKEACWTI 350 (402)
Q Consensus 336 ~~~~~~v~~~a~~~L 350 (402)
++ +..|+.+|+.++
T Consensus 357 ~~-~~vv~tyAA~~i 370 (370)
T PF08506_consen 357 SS-SYVVHTYAAIAI 370 (370)
T ss_dssp SS--HHHHHHHHHHH
T ss_pred CC-CcchhhhhhhhC
Confidence 99 888999998875
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=92.85 E-value=4.8 Score=33.34 Aligned_cols=145 Identities=18% Similarity=0.176 Sum_probs=93.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
++.+++...+++...+..|+..+..++...=-.|.. .+|.++.+..+++ +.++..|...+..+....+.....
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHH
Confidence 578888888999999999999999988765344444 4899999999988 999999999999998764444433
Q ss_pred HHhCCchHHHHHhh---C-CCCHHH---HHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccch-------hhHHHH
Q 015687 153 VIDHGAVPIFVRLL---S-SPTDDV---REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-------KLSMLR 218 (402)
Q Consensus 153 ~~~~g~i~~L~~lL---~-~~~~~v---~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~-------~~~~~~ 218 (402)
-...| +..-..+- . +..... ....+..+..+...+...|..+ +..+++.+.... ...-..
T Consensus 83 ~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~ 156 (187)
T PF12830_consen 83 RYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLD 156 (187)
T ss_pred HHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHH
Confidence 33333 32222221 1 111111 4455666667776555555554 455666663321 334455
Q ss_pred HHHHHHHHhhhC
Q 015687 219 NATWTLSNFCRG 230 (402)
Q Consensus 219 ~a~~~L~~l~~~ 230 (402)
...++..||+.-
T Consensus 157 ~~~Fla~nLA~l 168 (187)
T PF12830_consen 157 FLLFLAENLATL 168 (187)
T ss_pred HHHHHHHHHhcC
Confidence 566666666654
|
|
| >KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.84 E-value=7.5 Score=38.17 Aligned_cols=243 Identities=15% Similarity=0.200 Sum_probs=118.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhhH
Q 015687 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT--DDVREQAVWALGNVAGDSPKCRD 193 (402)
Q Consensus 116 i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~~~ 193 (402)
+-.|.+.+++++ ..++..|+.-|+-.-++ .+++.+.. .|..++.+.+ .++.-.|..+||.+...+-. .
T Consensus 454 lALLsdyv~~~~-s~~ri~aIlGLglayaG--sq~e~V~~-----lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~ 523 (878)
T KOG2005|consen 454 LALLSDYLQSSS-SIHRIGAILGLGLAYAG--SQREEVLE-----LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--E 523 (878)
T ss_pred HHHHHHhccCCC-ceeehHHhhhhHHhhcC--CchHHHHH-----HHhHHhcCCCCchhHHHHHHhhcceeEEecCC--h
Confidence 455667777777 67777777777644333 23343332 5566666644 45777777778877543321 1
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhc---c
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS---D 270 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~---~ 270 (402)
.+ ...+++.++..=.........+...-.|.-+.-+.. ..++..+..+..-...++..+--.+..++ .
T Consensus 524 dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llflgkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGT 594 (878)
T KOG2005|consen 524 DV-TSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGT 594 (878)
T ss_pred HH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Confidence 11 111344444433212234445555555555554432 11222222222222222222222221111 1
Q ss_pred CChHHHHHHHHhCcHHHHHHhcCCCC---hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHH
Q 015687 271 GTNDKIQAVIEAGVCPRLVELLRHPS---PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC 347 (402)
Q Consensus 271 ~~~~~~~~~~~~~~i~~L~~~L~~~~---~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~ 347 (402)
++.-.++. ..+..+-.... ..-+..|+--++-++.+.+-..+.. +..+-.+|..+ ++.+|+..-
T Consensus 595 Gnvl~Iq~-------q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~-----lR~f~h~l~yg-e~~iRravP 661 (878)
T KOG2005|consen 595 GNVLKIQS-------QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMV-----LRHFGHLLHYG-EPHIRRAVP 661 (878)
T ss_pred CceEEech-------hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHH-----HHHHHHHHHcC-CHHHHHHHH
Confidence 11111110 11222222111 1223355555556666555444433 23455666666 777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 348 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 348 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
.+++-++..+|.. +++..|-+..++.|.++..+|+.+++-+-.
T Consensus 662 Lal~llsvSNPq~-------~vlDtLsk~shd~D~eva~naIfamGLiGA 704 (878)
T KOG2005|consen 662 LALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAMNAIFAMGLIGA 704 (878)
T ss_pred HHHhhhccCCCcc-------hHHHHHHHhccCcchHHHHHHHHHhccccC
Confidence 7777776655542 356666777777777777777777665544
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=92.81 E-value=5.3 Score=39.71 Aligned_cols=194 Identities=17% Similarity=0.198 Sum_probs=106.3
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC----CCHHHHHHHHHHHHHhhC----
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVAG---- 186 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~---- 186 (402)
.+..+.+.+.+..-.. .+++..+..+...-..... ..+..+..++.+ ....++..|+-+++++..
T Consensus 358 a~~~i~~~i~~~~~~~--~ea~~~~~~~~~~~~~Pt~-----~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~ 430 (574)
T smart00638 358 ALKFIKQWIKNKKITP--LEAAQLLAVLPHTARYPTE-----EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCV 430 (574)
T ss_pred HHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhhcCCH-----HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhc
Confidence 4566666776654111 2233333333222111111 245666667664 456788888888888763
Q ss_pred CCchhhHHHHhcCChHHHHHHhcc---chhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhcc-C--CChhHHHH
Q 015687 187 DSPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-S--NDDEVLTD 260 (402)
Q Consensus 187 ~~~~~~~~~~~~g~i~~L~~~l~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~-~--~~~~v~~~ 260 (402)
+.+.+. ..+....++.+...|.. ..+..-+..++.+|.|+-.. ..++.+.+++. . .+..++..
T Consensus 431 ~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~ 499 (574)
T smart00638 431 NTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLA 499 (574)
T ss_pred CCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHH
Confidence 222211 11122356666665532 23444456667777776643 44556666665 2 24679999
Q ss_pred HHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC
Q 015687 261 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY 338 (402)
Q Consensus 261 a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~ 338 (402)
|+++|..++...+..++ +.+.+++.+ .++++|..|+..+-.. +|.. ..+..+...+....
T Consensus 500 Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t---~P~~-------~~l~~ia~~l~~E~ 561 (574)
T smart00638 500 AILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRMAAVLVLMET---KPSV-------ALLQRIAELLNKEP 561 (574)
T ss_pred HHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhcC
Confidence 99999998865554433 556666644 4567888887766432 2211 22445666666553
Q ss_pred chhHHH
Q 015687 339 KKSIKK 344 (402)
Q Consensus 339 ~~~v~~ 344 (402)
+..|+.
T Consensus 562 ~~QV~s 567 (574)
T smart00638 562 NLQVAS 567 (574)
T ss_pred cHHHHH
Confidence 555543
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.81 E-value=11 Score=37.55 Aligned_cols=132 Identities=15% Similarity=0.102 Sum_probs=83.8
Q ss_pred HHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC--------CCHHHHHHHHHHHHHhhC--CCchhhHHHHhcCChHH
Q 015687 134 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--------PTDDVREQAVWALGNVAG--DSPKCRDLVLSNGALMP 203 (402)
Q Consensus 134 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~nl~~--~~~~~~~~~~~~g~i~~ 203 (402)
.|+.++..+.+..++.+ + .|+++.+...|.. .+..-.+.|++.++++.. ..+..-.-+++.=+++.
T Consensus 389 aal~fl~~~~sKrke~T--f--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h 464 (970)
T COG5656 389 AALFFLIISKSKRKEET--F--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH 464 (970)
T ss_pred HHHHHHHHHhcccchhh--h--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 35555555555333222 2 3899999998832 234455677787777754 21111223334334555
Q ss_pred HHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCC
Q 015687 204 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 204 L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~ 272 (402)
++..+ +++..-++..+|.+++.+..+.+. ......+.+....++.+++-.+...|+-++..+..+.
T Consensus 465 v~P~f-~s~ygfL~Srace~is~~eeDfkd--~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 465 VIPAF-RSNYGFLKSRACEFISTIEEDFKD--NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred hhHhh-cCcccchHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 55566 667777889999999999655332 3334566777778888888889999998888877544
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.73 E-value=17 Score=39.32 Aligned_cols=112 Identities=17% Similarity=0.205 Sum_probs=70.7
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 015687 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 362 (402)
Q Consensus 283 ~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 362 (402)
|++|.|-.-|.+++..+|..|...+|.+......+... -........+.-+.+. ++.||.+++....++...+|+...
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~-~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSE-TYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcc-cchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence 78888888889999999999999999998765533220 0112233344444455 667777777776666654433322
Q ss_pred HH-----------------------------------HHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 363 AI-----------------------------------IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 363 ~l-----------------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
.. +.. ++..+.+.+.+.-..||+.|+..|..+-.
T Consensus 337 ~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 337 ASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred HHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 11 111 33444445566788999999988876543
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.64 E-value=8.9 Score=37.99 Aligned_cols=175 Identities=14% Similarity=0.131 Sum_probs=109.5
Q ss_pred cchhhHHHHHHHHHHHHhhhCC-CCCchhh----hhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 015687 210 EHAKLSMLRNATWTLSNFCRGK-PQPLFEQ----TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 284 (402)
Q Consensus 210 ~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~----~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 284 (402)
+-.+..++.+|+..+.++.--. |...... +..-...+.++|.++-+.|+..|..-++.+... ...++-..+
T Consensus 184 ~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~----fWe~iP~~i 259 (1005)
T KOG1949|consen 184 KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSK----FWEMIPPTI 259 (1005)
T ss_pred ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH----HHHHcCHHH
Confidence 5678899999999999887543 3332222 245566788999999999999998877776532 112222222
Q ss_pred ----HHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015687 285 ----CPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359 (402)
Q Consensus 285 ----i~~L~~~L~-~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 359 (402)
+..+..-+. ++..+||......|..+...... ..+++ .++|.+-..|.++ ...||..+.-.|.-|-....-
T Consensus 260 ~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le-~~Lpal~~~l~D~-se~VRvA~vd~ll~ik~vra~ 335 (1005)
T KOG1949|consen 260 LIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLE-QLLPALRYSLHDN-SEKVRVAFVDMLLKIKAVRAA 335 (1005)
T ss_pred HHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc--hhHHH-HHHHhcchhhhcc-chhHHHHHHHHHHHHHhhhhh
Confidence 233333333 34568999999999888875432 22333 4567777777777 888999988888877554333
Q ss_pred HHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 360 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
+...++ -...++..|..++..+.+.-+..|.|.
T Consensus 336 ~f~~I~---~~d~~l~~L~~d~~~v~rr~~~li~~s 368 (1005)
T KOG1949|consen 336 KFWKIC---PMDHILVRLETDSRPVSRRLVSLIFNS 368 (1005)
T ss_pred hhhccc---cHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 333332 234455556666655555555444443
|
|
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=92.62 E-value=5.2 Score=33.15 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=56.6
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (402)
.++.++++..+++ ..++..|+.++.-+....--+- ...+|.|+.+..++++.++..|...+..+....+..-.
T Consensus 9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 4677778777888 8999999999988776321111 12689999999999999999999999999876654433
|
|
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.6 Score=39.01 Aligned_cols=106 Identities=14% Similarity=0.227 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC----CCHHHHHHHHHHHHHhhcCCC-cchHHHHhCCch
Q 015687 85 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD----DFPQLQFEAAWALTNIASGTS-ENTRVVIDHGAV 159 (402)
Q Consensus 85 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~----~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i 159 (402)
..-...|+..|..++|. ++....+++..+--.+..+|... ..+-++..++.+++.+...++ +....+....++
T Consensus 114 snRvcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeiv 191 (315)
T COG5209 114 SNRVCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIV 191 (315)
T ss_pred hhHHHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHH
Confidence 34445566667666652 33344466665443444555432 236788899999999988544 344566677999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh
Q 015687 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (402)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (402)
|.++++++.+++--+..|+..++.+..++.+.+
T Consensus 192 PLcLrIme~gSElSktvaifI~qkil~dDvGLq 224 (315)
T COG5209 192 PLCLRIMELGSELSKTVAIFIFQKILGDDVGLQ 224 (315)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccchhHH
Confidence 999999999988889999999999988876543
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.35 E-value=2.2 Score=43.06 Aligned_cols=311 Identities=15% Similarity=0.121 Sum_probs=156.5
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHH------HhC
Q 015687 83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV------IDH 156 (402)
Q Consensus 83 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~------~~~ 156 (402)
+|..+...++..++.++.. ......+++.|++..|+..=.-+ +.-...-.||..|.+. ....+.+ +-.
T Consensus 365 ~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~vpr~s---~~~~g~s~cly~~~~~-q~~mervc~~p~~v~~ 438 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAVPRVS---ETFYGLSSCLYTIGSL-QGIMERVCALPLVVIH 438 (1516)
T ss_pred ccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcCCCch---hhhhhHHHHHHHHhhh-hhHHHHHhhccHHHHH
Confidence 4556667778888887653 35566788888887776654322 2333344455555542 1122111 112
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc-------c-----------hhhHHHH
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-------H-----------AKLSMLR 218 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~-------~-----------~~~~~~~ 218 (402)
.++..-+.+|.-....-+..+...+. +|..-...-+.+-.+..+..|+.+++. + .+.+...
T Consensus 439 ~vv~~~~~l~~cs~~~~~~~~~~ff~-~~f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~ 517 (1516)
T KOG1832|consen 439 QVVKLAIELLDCSQDQARKNSALFFA-AAFVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAF 517 (1516)
T ss_pred HHHHHHHHHHhcchhhccchHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhh
Confidence 34455555555322222222211111 110000111333344566666666621 1 1223445
Q ss_pred HHHHHHHHhhhCCC-----C-CchhhhhchHHHHHHhccCC------ChhHHHHHHHHHHHhccCCh-------HHHHHH
Q 015687 219 NATWTLSNFCRGKP-----Q-PLFEQTRPALPALERLIHSN------DDEVLTDACWALSYLSDGTN-------DKIQAV 279 (402)
Q Consensus 219 ~a~~~L~~l~~~~~-----~-~~~~~~~~~l~~L~~lL~~~------~~~v~~~a~~~l~~l~~~~~-------~~~~~~ 279 (402)
..|.+|....+..- . .......+..+..++-+... ..+..+..+|-+-.+....+ ...+.+
T Consensus 518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf 597 (1516)
T KOG1832|consen 518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF 597 (1516)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence 56666654443320 0 01111122223333322211 12344555665554433222 223456
Q ss_pred HHhCcHHHHHHhcCCC--------ChhhHHHHHHHHHHhhcCChHHHHHHHh-----C--CChHHHHHHhcCC---Cchh
Q 015687 280 IEAGVCPRLVELLRHP--------SPSVLIPALRTVGNIVTGDDMQTQCIIN-----H--QALPCLLDLLTQN---YKKS 341 (402)
Q Consensus 280 ~~~~~i~~L~~~L~~~--------~~~v~~~a~~~l~nl~~~~~~~~~~i~~-----~--~~l~~L~~ll~~~---~~~~ 341 (402)
...+++..++++..-+ -.+....|+.+|..+..-.+-+.+..-. . .++..++..-.-. .+|+
T Consensus 598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpe 677 (1516)
T KOG1832|consen 598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPE 677 (1516)
T ss_pred HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHH
Confidence 6677777777776422 2245566777776666555544332211 1 1333333332211 2789
Q ss_pred HHHHHHHHHHHHhcCCHHHH-----------------------------------HHHHHcCCHHHHHHHhccCC-----
Q 015687 342 IKKEACWTISNITAGNVNQI-----------------------------------QAIIEAGIIGPLVNLLLNAE----- 381 (402)
Q Consensus 342 v~~~a~~~L~nl~~~~~~~~-----------------------------------~~l~~~~~i~~L~~ll~~~~----- 381 (402)
+++.|..+|.|+....|+.. ..+..+++|..|+.+|+...
T Consensus 678 i~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~a 757 (1516)
T KOG1832|consen 678 IIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTA 757 (1516)
T ss_pred HHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcH
Confidence 99999999999887542211 12234678999999998754
Q ss_pred HHHHHHHHHHHHHhhcCCC
Q 015687 382 FEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 382 ~~v~~~a~~aL~nl~~~~~ 400 (402)
..+|.-||.+|.-|+.+.+
T Consensus 758 D~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 758 DCIRALACRVLLGLARDDT 776 (1516)
T ss_pred HHHHHHHHHHHhccccCcH
Confidence 3689999999998887654
|
|
| >PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes | Back alignment and domain information |
|---|
Probab=92.34 E-value=1.6 Score=38.59 Aligned_cols=157 Identities=18% Similarity=0.155 Sum_probs=92.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCC--chHHHHHhhC----CCCHHHHHHHHHHHHHhhCCCch
Q 015687 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLS----SPTDDVREQAVWALGNVAGDSPK 190 (402)
Q Consensus 117 ~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~----~~~~~v~~~a~~~L~nl~~~~~~ 190 (402)
..+...+..=+ ++-+.-++..++-++.+ +.....+...+ +...+..++. +..+..+-.++++++|+.....
T Consensus 66 ~~~~~~~~~Wp-~~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~- 142 (268)
T PF08324_consen 66 ILLLKILLSWP-PESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP- 142 (268)
T ss_dssp HHHHHHHCCS--CCC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHhCC-CccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-
Confidence 34444443322 24467777777766664 44434443322 2344444432 3577888899999999988766
Q ss_pred hhHHHHhcC--ChHHHHHHhccch---hhHHHHHHHHHHHHhhhCC-CCC-chhhhhchHHHHHHhcc-C-CChhHHHHH
Q 015687 191 CRDLVLSNG--ALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGK-PQP-LFEQTRPALPALERLIH-S-NDDEVLTDA 261 (402)
Q Consensus 191 ~~~~~~~~g--~i~~L~~~l~~~~---~~~~~~~a~~~L~~l~~~~-~~~-~~~~~~~~l~~L~~lL~-~-~~~~v~~~a 261 (402)
.+..+.... .+...+..+.... +..++..++..+.|++-.. ... .......++..+.+.+. . .|++....+
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~ 222 (268)
T PF08324_consen 143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRL 222 (268)
T ss_dssp CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence 456665532 2333333332332 7788889999999997654 111 22233345666666442 2 689999999
Q ss_pred HHHHHHhccCChHHH
Q 015687 262 CWALSYLSDGTNDKI 276 (402)
Q Consensus 262 ~~~l~~l~~~~~~~~ 276 (402)
+-+++++...++...
T Consensus 223 LvAlGtL~~~~~~~~ 237 (268)
T PF08324_consen 223 LVALGTLLSSSDSAK 237 (268)
T ss_dssp HHHHHHHHCCSHHHH
T ss_pred HHHHHHHhccChhHH
Confidence 999999996665443
|
It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A. |
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=92.32 E-value=9.6 Score=35.52 Aligned_cols=223 Identities=11% Similarity=0.054 Sum_probs=118.2
Q ss_pred CHHHHHHHHHHHHHhhCCCchhhHHHHhc---CChHHHHHHhc-cchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHH
Q 015687 170 TDDVREQAVWALGNVAGDSPKCRDLVLSN---GALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 245 (402)
Q Consensus 170 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~---g~i~~L~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~ 245 (402)
+..+..+|+.+|+.+..+..-. ..+-+. -++...+..+. ...+..+...+.|+|+.---............++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~-~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIV-STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHH-hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 7789999999999987554321 111111 13445555552 234556777777777653322111111122223333
Q ss_pred HHHhcc-CCChhHHHHHHHHHHHhccCChHHHHHHHHhC-cHHHHHHhcCCCChhhHHHHHHHHHHhhc--CCh-HHH--
Q 015687 246 LERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELLRHPSPSVLIPALRTVGNIVT--GDD-MQT-- 318 (402)
Q Consensus 246 L~~lL~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~i~~L~~~L~~~~~~v~~~a~~~l~nl~~--~~~-~~~-- 318 (402)
+..+-. -+...+....+.++.++....+.. .....+ .++.++..+-+....++..|....-.+.. +.. ...
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~--M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~ 215 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQ--MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS 215 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 333322 356778889999999988665533 122223 67788887777777777776555544432 221 111
Q ss_pred -HHHHhC----C-----ChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHHhccCCHHHHHH
Q 015687 319 -QCIINH----Q-----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN-QIQAIIEAGIIGPLVNLLLNAEFEIKKE 387 (402)
Q Consensus 319 -~~i~~~----~-----~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 387 (402)
....+. + +.+.|..++.+. +...-.--+|...-+.-+++. .....+ +..+...-..++++|+.+|.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~ 293 (372)
T PF12231_consen 216 VLEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQ 293 (372)
T ss_pred HHHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHH
Confidence 112222 2 334467777764 333333445655544434331 111111 113444444567899999999
Q ss_pred HHHHHHHhhc
Q 015687 388 AAWAISNATS 397 (402)
Q Consensus 388 a~~aL~nl~~ 397 (402)
|..+-..++.
T Consensus 294 A~~aW~~liy 303 (372)
T PF12231_consen 294 AFKAWRRLIY 303 (372)
T ss_pred HHHHHHHHHH
Confidence 9888776653
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=91.78 E-value=11 Score=35.10 Aligned_cols=305 Identities=15% Similarity=0.165 Sum_probs=154.2
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCch-hHHhhcCcHHHHHHhhc----C------CCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 82 SDDRNIQLDATTQFRKLLSIERSPPI-NEVIQSGVVPRFIEFLS----R------DDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 82 s~~~~~~~~a~~~l~~l~s~~~~~~~-~~~~~~g~i~~L~~lL~----~------~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+.+.+.+..|-..|.+.+...++.+. ..+.+ -++.|+++++ + +.+..+..+|+.+|+.+... ++..
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~i~ 80 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PEIV 80 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HHHH
Confidence 45566667777667666655433332 22222 2455555443 1 11267889999999998864 4433
Q ss_pred HHHHhCC---chHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc----chhhHHHHHHH
Q 015687 151 RVVIDHG---AVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE----HAKLSMLRNAT 221 (402)
Q Consensus 151 ~~~~~~g---~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~----~~~~~~~~~a~ 221 (402)
..+-+.- ++...+..+.+ .+..+....+|+|..--.. ..++....+..++..+.. -+...+....+
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL 155 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVERLLAALHNIKNRFPSKSIISERL 155 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHHHHHHHHHHhhccCCchhHHHHHH
Confidence 3333221 34445555543 4566777777777653222 223444455555555421 34567778888
Q ss_pred HHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhcc--CCh-HHHH---HHHHh----C-----cHH
Q 015687 222 WTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD--GTN-DKIQ---AVIEA----G-----VCP 286 (402)
Q Consensus 222 ~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~--~~~-~~~~---~~~~~----~-----~i~ 286 (402)
.++.+|....|..-......=+|.++..+-+....++..|...+..+.. +.. .... ...+. + +.+
T Consensus 156 ~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 235 (372)
T PF12231_consen 156 NIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCE 235 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHH
Confidence 8888888775544333334456666666666677777666555544431 111 1111 11111 2 233
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHhhcCChH-HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHh---cCCHHHHH
Q 015687 287 RLVELLRHPSPSVLIPALRTVGNIVTGDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT---AGNVNQIQ 362 (402)
Q Consensus 287 ~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~-~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~---~~~~~~~~ 362 (402)
.+..++.+.+......-+|..--..-+... .....+ ...+...-..++++ ++.+|..|..+=..+. ..++....
T Consensus 236 ~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~~ 313 (372)
T PF12231_consen 236 RLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTSP 313 (372)
T ss_pred HHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccccH
Confidence 455555553333333333433333223221 111111 13444555566777 8888887754333222 22222223
Q ss_pred HHHHcCCHHHHHHHhcc-CCH----HHHHHHHHHHHHhhc
Q 015687 363 AIIEAGIIGPLVNLLLN-AEF----EIKKEAAWAISNATS 397 (402)
Q Consensus 363 ~l~~~~~i~~L~~ll~~-~~~----~v~~~a~~aL~nl~~ 397 (402)
..+.- +..++...++. ... .++..+...++|+..
T Consensus 314 k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 314 KRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 33332 23333444443 233 677778888877754
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=91.65 E-value=13 Score=35.48 Aligned_cols=273 Identities=10% Similarity=0.101 Sum_probs=124.1
Q ss_pred HHHHHHhhcC---CCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhC----C
Q 015687 116 VPRFIEFLSR---DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAG----D 187 (402)
Q Consensus 116 i~~L~~lL~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~----~ 187 (402)
+..|..++.. ..++.+-....+++..+-.+-......+++ ..+..+....++ .++.--.....+++.+.. .
T Consensus 28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~ 106 (435)
T PF03378_consen 28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA 106 (435)
T ss_dssp HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC
Confidence 4445555543 222444444455544433332233333332 133333333344 355555555555555543 2
Q ss_pred CchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC-CCchhhhhchHHHHHHhc-cCCChhHHHHHHHHH
Q 015687 188 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLI-HSNDDEVLTDACWAL 265 (402)
Q Consensus 188 ~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l 265 (402)
+++.. .-++...+|.+..+| +.+-.+....+...++.|.+..+ .........++|.|+.-. -.....+ -...+.|
T Consensus 107 ~~~~v-~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL 183 (435)
T PF03378_consen 107 DPEAV-SQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLL 183 (435)
T ss_dssp GHH----HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHH
T ss_pred ChhHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHH
Confidence 22211 123455777888888 55556677777888888877655 222233345555544322 1111222 3333444
Q ss_pred HHhccCChHHHHHHHHhCc----HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH-HHHHHhCCChHHHHHHhcCCCch
Q 015687 266 SYLSDGTNDKIQAVIEAGV----CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-TQCIINHQALPCLLDLLTQNYKK 340 (402)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~----i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~-~~~i~~~~~l~~L~~ll~~~~~~ 340 (402)
..+....... +...|- +...-.++.+... -..+...|..+...-+.. .+..+. .++..+..-|+++..+
T Consensus 184 ~a~i~k~~~~---i~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~ 257 (435)
T PF03378_consen 184 QAYIKKDPSF---IVANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTE 257 (435)
T ss_dssp HHHHHHHGGG-------S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--H
T ss_pred HHHHHhCchh---hcchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcH
Confidence 4433222222 122222 2223334444432 245777777777655431 121121 3444555555544366
Q ss_pred hHHHHHHHHHHHHhc-CCHHHHHHHHH---cCCHHHHHHHh-----cc-CCHHHHHHHHHHHHHhhcC
Q 015687 341 SIKKEACWTISNITA-GNVNQIQAIIE---AGIIGPLVNLL-----LN-AEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 341 ~v~~~a~~~L~nl~~-~~~~~~~~l~~---~~~i~~L~~ll-----~~-~~~~v~~~a~~aL~nl~~~ 398 (402)
...+.-+..++.++. .+++..-..++ .|++..++.-+ .. ..+.=|+-++-+++++...
T Consensus 258 kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e 325 (435)
T PF03378_consen 258 KFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE 325 (435)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence 666666666666654 45666655554 56655555532 11 3344477777777776643
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.54 Score=39.86 Aligned_cols=85 Identities=13% Similarity=0.180 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCchhHHhhcC-------cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch-HHHHhC
Q 015687 85 RNIQLDATTQFRKLLSIERSPPINEVIQSG-------VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT-RVVIDH 156 (402)
Q Consensus 85 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g-------~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~ 156 (402)
.+-|..|+.+|+++.-. +.+++.++..+ ++..|+++|....++..++-|+-.|.+++.++.... ....+.
T Consensus 138 lSPqrlaLEaLcKLsV~--e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~ 215 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVI--ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQK 215 (257)
T ss_pred CCHHHHHHHHHHHhhee--ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence 45788999999998543 34444444333 566777778776658899999999999999866655 444557
Q ss_pred CchHHHHHhhCCCCH
Q 015687 157 GAVPIFVRLLSSPTD 171 (402)
Q Consensus 157 g~i~~L~~lL~~~~~ 171 (402)
+.|..|+.++++...
T Consensus 216 ~~i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 216 PCISHLIAFIEDAEQ 230 (257)
T ss_pred chHHHHHHHHHHHHH
Confidence 899999999976443
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor | Back alignment and domain information |
|---|
Probab=91.45 E-value=5.1 Score=40.39 Aligned_cols=158 Identities=16% Similarity=0.202 Sum_probs=110.5
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
..|..++..|.|.|......+-..+...+..++.+ + ++..|+++.-+..+ ..|+.+|..+-. |..+
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~----~----l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K 69 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREP----W----LVNGLVDYYLSTNS----QRALEILVGVQE--PHDK 69 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH----H----HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH
Confidence 35789999999999988888888888887654222 1 36777776544442 235556654422 3212
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
..+..|-.++.. +.-|-.++..|+.+....|..--.+.+...+..|+.+|..+.+..+...|+.+|.-|.-.
T Consensus 70 ------~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 70 ------HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred ------HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 234555556654 466778999999999887766778888899999999998888999999999998888765
Q ss_pred CCCCchhhhhchHHHHHHhc
Q 015687 231 KPQPLFEQTRPALPALERLI 250 (402)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~lL 250 (402)
-|..-......++.++..++
T Consensus 142 ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 142 IPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred ccchhhHHHHHHHHHHHHHH
Confidence 55444444455555555555
|
The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking []. |
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.43 E-value=2.2 Score=37.71 Aligned_cols=139 Identities=16% Similarity=0.166 Sum_probs=93.2
Q ss_pred HHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHh
Q 015687 203 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 282 (402)
Q Consensus 203 ~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 282 (402)
..+..| .+.+-......+-.+..|+...+..-......++..+++-+++....|...||.+++.+...-.+.+...
T Consensus 92 ~~l~~L-~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~--- 167 (334)
T KOG2933|consen 92 QALKKL-SSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE--- 167 (334)
T ss_pred HHHHHh-chHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 344444 4555555556666666666655544444556777888888888888899999999998876555444432
Q ss_pred CcHHHHHHhc-C---CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 283 GVCPRLVELL-R---HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 283 ~~i~~L~~~L-~---~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
++.++..| . .++--+++.|-.+|..++..-..+ .+++.|+..+.+. .+.++..++.+..+...
T Consensus 168 --ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~-n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 168 --LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHS-NPRVRAKAALCFSRCVI 234 (334)
T ss_pred --HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhh-chhhhhhhhccccccce
Confidence 33344433 2 234458888999998887653322 4567788888888 89999988888877664
|
|
| >PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor [] | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.18 Score=29.44 Aligned_cols=38 Identities=34% Similarity=0.394 Sum_probs=25.3
Q ss_pred HHhhhccCCCCchHHhhhhHHHHHHHHHHhhhHHHHhhh
Q 015687 11 VRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKR 49 (402)
Q Consensus 11 ~~~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~~~~kr 49 (402)
+|...||+..++.+.-+|| +...+.-|.+|-+.++.-|
T Consensus 2 PR~sqYK~~~~~~~Q~eRR-~~~Le~QK~kR~d~~~~aR 39 (40)
T PF11538_consen 2 PRLSQYKNKGSALDQEERR-REFLERQKNKRLDYVNHAR 39 (40)
T ss_dssp TTCSCTT-TTTSCSHHHHH-HHHHHHHHSHHSHHHHHHH
T ss_pred ccHHHhhcccchHhHHHHH-HHHHHHHHHHhHHHHHhcc
Confidence 5788999854555555545 4556777888888777655
|
Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B. |
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.25 E-value=18 Score=36.50 Aligned_cols=265 Identities=12% Similarity=0.130 Sum_probs=120.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHh--CCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch-hhHH
Q 015687 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK-CRDL 194 (402)
Q Consensus 119 L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~-~~~~ 194 (402)
+++++++.++--++..++..+.-...+-.-..+.+.. ......+.+++.. +.-+.+...+.+|+.+.....+ .+..
T Consensus 531 ~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~ 610 (978)
T KOG1993|consen 531 FLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPY 610 (978)
T ss_pred HHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHH
Confidence 3445554433445555555555554432222222221 1223333344432 3445566666777766543221 1111
Q ss_pred HHhcCChHHHHHHhccc-hhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCCh---hHHHHHH--H--HHH
Q 015687 195 VLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD---EVLTDAC--W--ALS 266 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~---~v~~~a~--~--~l~ 266 (402)
... ++..+-.+-..+ .++-++.....++.|+...-.........-++|++--...-+.| ...+++. | .|.
T Consensus 611 ~~~--ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~ 688 (978)
T KOG1993|consen 611 AST--IVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLM 688 (978)
T ss_pred HHH--HHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHh
Confidence 111 122222222222 34455666677888888765444443334444444333322222 2344443 2 233
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc-CChHHHHHHHhCCChHHHHHHhcCCCchhHHHH
Q 015687 267 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT-GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 345 (402)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~-~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~ 345 (402)
|...-.++ +. +++|.+..++....+..+ .++.++..-.- .+....+ -...|+...+..++.+- ..+-...
T Consensus 689 n~~~l~p~----ll--~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~dv-r~egl~a 759 (978)
T KOG1993|consen 689 NSQKLTPE----LL--LLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDDV-RNEGLQA 759 (978)
T ss_pred cccccCHH----HH--HHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHHh-hHHHHHH
Confidence 33222222 22 457777777754443332 33333333222 2221111 12236777777777655 4444445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHh
Q 015687 346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNA 395 (402)
Q Consensus 346 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl 395 (402)
.+.++.++...++ ........+++|.+...+-. +.|-+-..-+..++.+
T Consensus 760 vLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi 810 (978)
T KOG1993|consen 760 VLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARI 810 (978)
T ss_pred HHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence 5555555555443 45555667777777776533 3344444444444433
|
|
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=91.07 E-value=2.7 Score=47.85 Aligned_cols=203 Identities=13% Similarity=0.152 Sum_probs=112.1
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
....+.+..+...+.++.-.+++.+...+|+++..+|.+.-..+....+..+-.+. .+.-.-+...+..-+..+....+
T Consensus 561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~ 639 (2341)
T KOG0891|consen 561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSP 639 (2341)
T ss_pred hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHH
Confidence 44455666677777888889999999999999987774322211111111111111 11111111111111111111111
Q ss_pred CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCChhhHHHHHHHHHHhh
Q 015687 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIV 311 (402)
Q Consensus 233 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~l~nl~ 311 (402)
.-....+...+..++..+...+..+...+..++..|+..........++ ..++.+.+.+. ..+..-+..+++++++++
T Consensus 640 ~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~ 718 (2341)
T KOG0891|consen 640 VLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLE 718 (2341)
T ss_pred HHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence 1122233455567777778888888888888888888544433333333 44555555553 345567788999999998
Q ss_pred cCChHHHHHHHh-CCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCC
Q 015687 312 TGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357 (402)
Q Consensus 312 ~~~~~~~~~i~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~ 357 (402)
+..........+ .-++..+...+.......++.++...++++....
T Consensus 719 s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d 765 (2341)
T KOG0891|consen 719 SSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALD 765 (2341)
T ss_pred cccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccc
Confidence 754321111111 1345556666666656678888888888776643
|
|
| >PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] | Back alignment and domain information |
|---|
Probab=90.88 E-value=13 Score=34.08 Aligned_cols=110 Identities=20% Similarity=0.207 Sum_probs=81.8
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHhhc-CChHHHHHHHhC-C-ChHHHHHHhcCCC----c--------hhHHHHHHHH
Q 015687 285 CPRLVELLRHPSPSVLIPALRTVGNIVT-GDDMQTQCIINH-Q-ALPCLLDLLTQNY----K--------KSIKKEACWT 349 (402)
Q Consensus 285 i~~L~~~L~~~~~~v~~~a~~~l~nl~~-~~~~~~~~i~~~-~-~l~~L~~ll~~~~----~--------~~v~~~a~~~ 349 (402)
+..+...|+.....+..++++.+..++. .+......++.. + -.+.+.+++.... . +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6788888988888899999999999999 665666667654 2 2445666663321 1 2788887765
Q ss_pred HHHHh-cCCHHHHHHHHH-cCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 015687 350 ISNIT-AGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISN 394 (402)
Q Consensus 350 L~nl~-~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~n 394 (402)
+..+. .+++.....+++ .+.+..+..-|..+++++....+.+|..
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~ 184 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKD 184 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 55444 578888888775 6678889999988889999888888875
|
The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. |
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.78 Score=38.93 Aligned_cols=87 Identities=20% Similarity=0.236 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHh-------CCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcCC
Q 015687 298 SVLIPALRTVGNIVTGDDMQTQCIIN-------HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII-EAGI 369 (402)
Q Consensus 298 ~v~~~a~~~l~nl~~~~~~~~~~i~~-------~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~ 369 (402)
.-+..|+.+++.++-... +.+.++. +.++..|.+++...+++..|+-|+-.|.|++.++......+. +.+.
T Consensus 139 SPqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 457889999999886432 3333332 245667888887777889999999999999998776665544 6889
Q ss_pred HHHHHHHhccCCHHHH
Q 015687 370 IGPLVNLLLNAEFEIK 385 (402)
Q Consensus 370 i~~L~~ll~~~~~~v~ 385 (402)
+..|+.++++.+...+
T Consensus 218 i~~Li~FiE~a~~~~~ 233 (257)
T PF12031_consen 218 ISHLIAFIEDAEQNAH 233 (257)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999987665433
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=90.49 E-value=2.7 Score=37.42 Aligned_cols=138 Identities=12% Similarity=0.169 Sum_probs=81.2
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch-HHHHhCCchHHHHH----hhC--------CCCHHHHHHHHHHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT-RVVIDHGAVPIFVR----LLS--------SPTDDVREQAVWAL 181 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~----lL~--------~~~~~v~~~a~~~L 181 (402)
++|.++.++++.+ +.++..++.+|..+....+... ..+...|..+.+-. ++. .++..+...+.-+|
T Consensus 120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 6899999999988 9999999999999988543332 23566675544433 333 34566778888888
Q ss_pred HHhhCC----CchhhHHHHhcCChHHHHHHhccc---hhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCC
Q 015687 182 GNVAGD----SPKCRDLVLSNGALMPLLAQFNEH---AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN 253 (402)
Q Consensus 182 ~nl~~~----~~~~~~~~~~~g~i~~L~~~l~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~ 253 (402)
..++.- +...+......-.-+.++.-+... ..+.+....+..+..+...-..........+++.+.+.+.+.
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 887431 111122221111112122222122 246666666666666665533344455567777777766554
|
|
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=90.44 E-value=1 Score=35.44 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=59.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~ 144 (402)
+++..+.+.|++.++..+..|+..|-.++..-.......+...+++..|++++....++.++..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999887653234456677889999999999854448899999988887664
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] | Back alignment and domain information |
|---|
Probab=90.20 E-value=15 Score=33.68 Aligned_cols=155 Identities=17% Similarity=0.119 Sum_probs=101.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhc-CCCcchHHHHhC--CchHHHHHhhCC-----CC--------HHHHHHHHH
Q 015687 116 VPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTSENTRVVIDH--GAVPIFVRLLSS-----PT--------DDVREQAVW 179 (402)
Q Consensus 116 i~~L~~lL~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~--g~i~~L~~lL~~-----~~--------~~v~~~a~~ 179 (402)
++.+...|.+.. ..+...++..|..++. ........+... --.+.|..++.- .. +.+|...+.
T Consensus 58 ~k~lyr~L~~~~-~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSSK-PSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcCc-HHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 778888888888 7888999999999998 655666666653 223455666532 11 278888887
Q ss_pred HHHHhhC-CCchhhHHHHh-cCChHHHHHHhccchhhHHHHHHHHHHH-HhhhCCC--CCch--hhhhchHHHHHHhccC
Q 015687 180 ALGNVAG-DSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLS-NFCRGKP--QPLF--EQTRPALPALERLIHS 252 (402)
Q Consensus 180 ~L~nl~~-~~~~~~~~~~~-~g~i~~L~~~l~~~~~~~~~~~a~~~L~-~l~~~~~--~~~~--~~~~~~l~~L~~lL~~ 252 (402)
.+..+.. .++..+..+++ .+.+..+.+-+ ..++.++....+.+|. ++..+.. .... .....++..|..+...
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l-~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGL-RKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcc-cCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 7666654 45555555554 45677777777 4466677777777776 4554431 1111 2236678888887776
Q ss_pred CCh----hHHHHHHHHHHHhccCC
Q 015687 253 NDD----EVLTDACWALSYLSDGT 272 (402)
Q Consensus 253 ~~~----~v~~~a~~~l~~l~~~~ 272 (402)
.++ .+...+-..|..+|..+
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcCC
Confidence 666 67777777777766543
|
The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. |
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=90.04 E-value=1.2 Score=35.15 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=61.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcC
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~ 145 (402)
+++..+.+.|++.++.++..|+..|-.++..-......++...+++..|++++....++.++..++..+...+..
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999876543344567788899999999998844489999999999887653
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species | Back alignment and domain information |
|---|
Probab=89.92 E-value=12 Score=32.41 Aligned_cols=135 Identities=20% Similarity=0.214 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHH--------HHHHHHHHHHHhhCCCchhhHHHHhcCCh
Q 015687 130 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD--------VREQAVWALGNVAGDSPKCRDLVLSNGAL 201 (402)
Q Consensus 130 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~--------v~~~a~~~L~nl~~~~~~~~~~~~~~g~i 201 (402)
.....|+..|+.+-. ..+++.++++++.++.. +.+....++..+ -.|-+
T Consensus 57 ~~~~~a~~LLaq~re-----------~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv------------~~G~~ 113 (249)
T PF06685_consen 57 NLHFYALYLLAQFRE-----------ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV------------GDGDI 113 (249)
T ss_pred HHHHHHHHHHHHHhh-----------hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH------------hCCCH
Confidence 345556666655433 25799999999765442 122222233333 24556
Q ss_pred HHHHHHhccc-hhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhcc-CChHHHHHH
Q 015687 202 MPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD-GTNDKIQAV 279 (402)
Q Consensus 202 ~~L~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~ 279 (402)
+.|..++.+. -+.-++..++.+|..+....+......+.-+-..+-..+..++..+....+..+..|.. .-...+..+
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~ 193 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKA 193 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHH
Confidence 6777777443 36678889999999999987665555544444444444544444433333333333321 122344556
Q ss_pred HHhCcHHH
Q 015687 280 IEAGVCPR 287 (402)
Q Consensus 280 ~~~~~i~~ 287 (402)
.+.|.++.
T Consensus 194 f~~~lVd~ 201 (249)
T PF06685_consen 194 FEDGLVDP 201 (249)
T ss_pred HHcCCCCc
Confidence 66666654
|
The function of this family is unknown. |
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=89.44 E-value=5 Score=36.87 Aligned_cols=209 Identities=19% Similarity=0.165 Sum_probs=108.1
Q ss_pred hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 015687 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191 (402)
Q Consensus 112 ~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 191 (402)
...++..|..++..+.++......+.+|..-...- ..-+...++..+..-+.+..+.+|..-+..++.+....+..
T Consensus 20 s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~ 95 (339)
T PF12074_consen 20 SSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS 95 (339)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc
Confidence 34457777888876554676777777776544321 01112245677777778777779988888888887511110
Q ss_pred hHHHHhcCChHHHHHHhcc---chhhHHH---HHHHHHHHHhhhCC-----------------CCCchhhhhchHHHHHH
Q 015687 192 RDLVLSNGALMPLLAQFNE---HAKLSML---RNATWTLSNFCRGK-----------------PQPLFEQTRPALPALER 248 (402)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~---~~~~~~~---~~a~~~L~~l~~~~-----------------~~~~~~~~~~~l~~L~~ 248 (402)
...-.-..+++.|+..+.. ++-+... -.++.++..++... +.+.+.... +
T Consensus 96 ~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~-------k 168 (339)
T PF12074_consen 96 DSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSE-------K 168 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCH-------H
Confidence 0111122367777777632 1111111 11111111111111 111111111 1
Q ss_pred hccC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHhCC
Q 015687 249 LIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQ 325 (402)
Q Consensus 249 lL~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~--~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~ 325 (402)
++.. .+++.....+.++..+..+.......-.....-..++.++.+. .+.+|..|+.++..+...++.. +...
T Consensus 169 vyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~ 244 (339)
T PF12074_consen 169 VYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKS 244 (339)
T ss_pred HHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHH
Confidence 2222 3444455566666555543332211111223456677777777 7899999999999999887763 2333
Q ss_pred ChHHHHHHhc
Q 015687 326 ALPCLLDLLT 335 (402)
Q Consensus 326 ~l~~L~~ll~ 335 (402)
++..+...+.
T Consensus 245 li~~l~~~l~ 254 (339)
T PF12074_consen 245 LISGLWKWLS 254 (339)
T ss_pred HHHHHHHHHH
Confidence 4445555553
|
This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM. |
| >KOG1788 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.12 E-value=5.9 Score=41.10 Aligned_cols=282 Identities=17% Similarity=0.151 Sum_probs=155.7
Q ss_pred hhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcC-CCcchHHHHhCC
Q 015687 79 GVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG-TSENTRVVIDHG 157 (402)
Q Consensus 79 ~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g 157 (402)
.|++++.+.+-..+..+.++.+.. ..+....-+.--+|.|+.-+..-. ..+|...+.+|..-... +.--.+.
T Consensus 475 FLkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvncvPeqE----- 547 (2799)
T KOG1788|consen 475 FLKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVNCVPEQE----- 547 (2799)
T ss_pred HHHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhccCcHHH-----
Confidence 445778888888888888887643 333333445566888888887666 57777777766543321 0000111
Q ss_pred chHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccch---hhHHHHHHHHHHHHhhhCCC-
Q 015687 158 AVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKP- 232 (402)
Q Consensus 158 ~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~---~~~~~~~a~~~L~~l~~~~~- 232 (402)
+-.|+-+|+.+ ...+....+.....+...+..+++.+.+-|.++.|-..+.++. .++- ....+.....+|
T Consensus 548 -LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdq----ysgvsehydrnps 622 (2799)
T KOG1788|consen 548 -LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQ----YSGVSEHYDRNPS 622 (2799)
T ss_pred -HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcch----hhhHHHHhhcCCC
Confidence 22345566654 3445555666666666777778899999999999888775422 0000 011112222221
Q ss_pred CCchhhh---hchHHHHHHhccCCC--hhH------HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHH
Q 015687 233 QPLFEQT---RPALPALERLIHSND--DEV------LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301 (402)
Q Consensus 233 ~~~~~~~---~~~l~~L~~lL~~~~--~~v------~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~ 301 (402)
.+.+... ...+-.--.++++.. ..+ ....-.+|..+.....+....+.+..++..+++++ -++..|.
T Consensus 623 s~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl--indehRS 700 (2799)
T KOG1788|consen 623 SPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL--INDEHRS 700 (2799)
T ss_pred CchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee--echHHHH
Confidence 1111110 011101111222211 011 11112345556666666667788888888888888 3455688
Q ss_pred HHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC-----------chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Q 015687 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-----------KKSIKKEACWTISNITAGNVNQIQAIIEAGII 370 (402)
Q Consensus 302 ~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~-----------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i 370 (402)
..++++..+....+.+.. ++-+-.++..|+++. ..........++..+..-+......+-+++++
T Consensus 701 slLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGF 776 (2799)
T KOG1788|consen 701 SLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGF 776 (2799)
T ss_pred HHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccH
Confidence 889999988876664322 223445666666531 12344555566666664334444455577888
Q ss_pred HHHHHHhc
Q 015687 371 GPLVNLLL 378 (402)
Q Consensus 371 ~~L~~ll~ 378 (402)
..|...|.
T Consensus 777 slLlttLh 784 (2799)
T KOG1788|consen 777 SLLLTTLH 784 (2799)
T ss_pred HHHHHHHH
Confidence 77777764
|
|
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.07 E-value=22 Score=36.09 Aligned_cols=156 Identities=13% Similarity=0.066 Sum_probs=77.5
Q ss_pred HhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHH-hhCC--CCHHHHHHHHHHHHHhhC
Q 015687 110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSS--PTDDVREQAVWALGNVAG 186 (402)
Q Consensus 110 ~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~--~~~~v~~~a~~~L~nl~~ 186 (402)
+.+.+.+...-.-|..+|...-+..|+..+..++...+.....++.. .+..+++ +..+ .+..-.+.+++....++.
T Consensus 357 lFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~talai 435 (960)
T KOG1992|consen 357 LFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVTALAI 435 (960)
T ss_pred HhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhHHHHh
Confidence 33444444444555544423345667777777887654444444432 2333333 4443 344445667777777764
Q ss_pred CCchhhHHHHhcC----ChHHHHH----Hhcc---chhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCCh
Q 015687 187 DSPKCRDLVLSNG----ALMPLLA----QFNE---HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD 255 (402)
Q Consensus 187 ~~~~~~~~~~~~g----~i~~L~~----~l~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 255 (402)
.....+.-+.... .+..+.. -|.+ ...+-++..+. ..+..............++|.++..|+.+..
T Consensus 436 k~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aI---Ky~~~FR~ql~~~~lm~~~p~li~~L~a~s~ 512 (960)
T KOG1992|consen 436 KGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAI---KYIYTFRNQLGKEHLMALLPRLIRFLEAESR 512 (960)
T ss_pred hcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhccc---ceeeeecccCChHHHHHHHHHHHHhccCcch
Confidence 4332211111111 1111111 1111 11122222221 1221111233334556789999999999999
Q ss_pred hHHHHHHHHHHHhc
Q 015687 256 EVLTDACWALSYLS 269 (402)
Q Consensus 256 ~v~~~a~~~l~~l~ 269 (402)
-+...|+.++-.+.
T Consensus 513 vvhsYAA~aiEkil 526 (960)
T KOG1992|consen 513 VVHSYAAIAIEKLL 526 (960)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887764
|
|
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=88.90 E-value=2.7 Score=32.98 Aligned_cols=75 Identities=13% Similarity=0.051 Sum_probs=62.3
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.++..|.+-|.+.++.++-.|+..|-.+..+. ..+...+.+.++++.|+.++....++.++..++..+...+...
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 35777777788889999999999999888774 5578888889999999999966778889999998888887665
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=88.68 E-value=9.1 Score=29.64 Aligned_cols=75 Identities=12% Similarity=0.009 Sum_probs=61.7
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-hhHHHHhcCChHHHHHHhcc--chhhHHHHHHHHHHHHhhhCCC
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNE--HAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~g~i~~L~~~l~~--~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
++..|.+-|.++++.++..|+.+|-.+..++.. ++..+....++..++.++.. ..+..++..+...+.......+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 577778888889999999999999999877654 77777777888889999865 4688899999999888887653
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=88.51 E-value=7.2 Score=41.25 Aligned_cols=237 Identities=20% Similarity=0.250 Sum_probs=132.3
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCc--------HHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGV--------VPRFIEFLSRDDFPQLQFEAAWALTNI 142 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~--------i~~L~~lL~~~~~~~~~~~a~~~L~~l 142 (402)
+.+..|++.+-+...+.+.-++.+++.++...........++.-+ +..+=++..++-...++..++|+|+.+
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~ 156 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAY 156 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence 456788888889999999999999999986542222122222211 122222222222246888899999887
Q ss_pred hcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHh--cCChHHHHHHhccchhhHHHHHH
Q 015687 143 ASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS--NGALMPLLAQFNEHAKLSMLRNA 220 (402)
Q Consensus 143 ~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~g~i~~L~~~l~~~~~~~~~~~a 220 (402)
..+..+. .+. ..+..+.+++..++.+++...+..+..... ..++.+.. ..+++..+.-+ .+.+..++..+
T Consensus 157 l~~~~~s--~~~--~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~a 228 (1549)
T KOG0392|consen 157 LKHMDES--LIK--ETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVA 228 (1549)
T ss_pred HHhhhhH--hhH--HHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHH
Confidence 7642221 111 356777788877777776665555543321 11222221 01233344444 56677888888
Q ss_pred HHHHHHhhhCCCCCchhhhhchHHHHHHhccCCCh-hH-HHHHHHHHHHhccCCh--HH-HHHHHHhCcHHHHHHhcCCC
Q 015687 221 TWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD-EV-LTDACWALSYLSDGTN--DK-IQAVIEAGVCPRLVELLRHP 295 (402)
Q Consensus 221 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v-~~~a~~~l~~l~~~~~--~~-~~~~~~~~~i~~L~~~L~~~ 295 (402)
+.++.......+......+..++..+...+..-|. .- .......+..++...+ +. .+.-.+.|++|.+..++.+.
T Consensus 229 a~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~ 308 (1549)
T KOG0392|consen 229 AQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHT 308 (1549)
T ss_pred HHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHH
Confidence 88877766654333333334444444444432222 00 1111122233333221 00 11123358999999999998
Q ss_pred ChhhHHHHHHHHHHhhcCCh
Q 015687 296 SPSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 296 ~~~v~~~a~~~l~nl~~~~~ 315 (402)
-..++..++..+..+....+
T Consensus 309 i~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 309 ISSVRRAALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 88899999999988876543
|
|
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=88.21 E-value=1.8 Score=33.58 Aligned_cols=74 Identities=9% Similarity=0.021 Sum_probs=57.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHH-HHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ-LQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~-~~~~a~~~L~~l~~ 144 (402)
+++..+.+.|++.++..+..|+..|-.++..-..+...++...+++..|+.++....... ++..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 467888889999999999999999999876533344466778889999999998765333 88888888876654
|
Unpublished observations. Domain of unknown function. |
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.99 E-value=3.1 Score=34.92 Aligned_cols=98 Identities=9% Similarity=0.075 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC----CCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHH
Q 015687 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ----NYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPL 373 (402)
Q Consensus 299 v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~----~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L 373 (402)
-...|+..+.-++++ ++....++++.+--.+..+|.. +....+|-.+..+++.+.. ++++.+..+....++|.+
T Consensus 116 RvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 116 RVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 345667777666664 4455556666553344444432 2235688899999999997 688888999999999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhc
Q 015687 374 VNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 374 ~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
+++++.++.-.+--|+..+..+..
T Consensus 195 LrIme~gSElSktvaifI~qkil~ 218 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILG 218 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhc
Confidence 999999888778778877776654
|
|
| >PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal | Back alignment and domain information |
|---|
Probab=87.84 E-value=18 Score=31.73 Aligned_cols=181 Identities=19% Similarity=0.193 Sum_probs=102.3
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------chhhHHHHhcCChHHHHHHhccch---hhHHHHHHHHHHHH
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-------PKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSN 226 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-------~~~~~~~~~~g~i~~L~~~l~~~~---~~~~~~~a~~~L~~ 226 (402)
|+-+.+.+-+.+ +...+.++..|..++... ++.|-.+.-.+.+|.++..+.+.. .......++..|+.
T Consensus 64 Glq~Ll~KGL~S--s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~ 141 (262)
T PF14225_consen 64 GLQPLLLKGLRS--SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ 141 (262)
T ss_pred hHHHHHhCccCC--CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 333444444443 334556677777766321 112333333345666666663333 12455677788888
Q ss_pred hhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHH
Q 015687 227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306 (402)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~ 306 (402)
+|........ ..++....+-=..+..+....++..|..-.. ++ . +..++..+..+|.+.-+.++..++.+
T Consensus 142 ~a~~~~~~~L---a~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~-~-----~~~~l~~Ll~lL~n~~~w~~~~~L~i 211 (262)
T PF14225_consen 142 VAEAQGLPNL---ARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PD-H-----EFQILTFLLGLLENGPPWLRRKTLQI 211 (262)
T ss_pred HHHhCCCccH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-ch-h-----HHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 8865432221 1222222222123345556666666654221 11 1 12346778999988888999999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 307 l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
|..+....+-... ...+++.++.++++++ .-.+|.-+|-++..
T Consensus 212 L~~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 212 LKVLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred HHHHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 9999876553322 5556888999999876 34456666655543
|
|
| >PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes | Back alignment and domain information |
|---|
Probab=87.67 E-value=2 Score=37.93 Aligned_cols=133 Identities=17% Similarity=0.133 Sum_probs=75.5
Q ss_pred hhhHHHHHHHHHHHHhhhCCCCCchhhh--h-chHHHHHHhccCC---ChhHHHHHHHHHHHhccCChHHH-HHHHHhCc
Q 015687 212 AKLSMLRNATWTLSNFCRGKPQPLFEQT--R-PALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKI-QAVIEAGV 284 (402)
Q Consensus 212 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~-~~l~~L~~lL~~~---~~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~ 284 (402)
..+..+--++.+++|+..+.+....... . .++..+..+..+. +..++..+...+.|++....... ..-....+
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4566777889999999987544332222 2 2333343333333 78899999999998863211000 00011123
Q ss_pred HHHHHHhcC-C-CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHH
Q 015687 285 CPRLVELLR-H-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344 (402)
Q Consensus 285 i~~L~~~L~-~-~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~ 344 (402)
+..+.+.+. . .+++....++-++|+++...+.........|+-..+...-....++.++.
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~ 263 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKE 263 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHH
Confidence 556666432 2 57889999999999999877654443333344444444443332444443
|
It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A. |
| >PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species | Back alignment and domain information |
|---|
Probab=87.61 E-value=18 Score=31.41 Aligned_cols=117 Identities=26% Similarity=0.347 Sum_probs=65.9
Q ss_pred hchHHHHHHhccCCChh--------HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--ChhhHHHHHHHHHH
Q 015687 240 RPALPALERLIHSNDDE--------VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGN 309 (402)
Q Consensus 240 ~~~l~~L~~lL~~~~~~--------v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~--~~~v~~~a~~~l~n 309 (402)
..++|.++++++.++.. +.+..-.++..++. |=++.|..++.++ +..+|..|+.++..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------------G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------------GDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------------CCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 47789999999665431 22233333444443 3455666666555 46789999999999
Q ss_pred hhcCChHHHHHHHhCCChHHHHHH-hcCCCchhHHHHHHHHHHHHhcC----CHHHHHHHHHcCCHHHHH
Q 015687 310 IVTGDDMQTQCIINHQALPCLLDL-LTQNYKKSIKKEACWTISNITAG----NVNQIQAIIEAGIIGPLV 374 (402)
Q Consensus 310 l~~~~~~~~~~i~~~~~l~~L~~l-l~~~~~~~v~~~a~~~L~nl~~~----~~~~~~~l~~~~~i~~L~ 374 (402)
++...+..+..+++. +..++.. +... ++. .-.+.+++++.- --..++.+.+.|+++.-+
T Consensus 140 l~~~~~~~Re~vi~~--f~~ll~~~l~~~--~~~--~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~~ 203 (249)
T PF06685_consen 140 LVHEGPISREEVIQY--FRELLNYFLERN--PSF--LWGSLVADICDLYPEELLPEIRKAFEDGLVDPSF 203 (249)
T ss_pred HHHcCCCCHHHHHHH--HHHHHHHHhccC--chH--HHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCccc
Confidence 999888777766642 3333332 3332 222 112233444442 233455556677765533
|
The function of this family is unknown. |
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=87.57 E-value=3.1 Score=32.24 Aligned_cols=75 Identities=15% Similarity=0.095 Sum_probs=58.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC--CCHHHHHHHHHHHHHhhcC
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD--DFPQLQFEAAWALTNIASG 145 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~~~~~~a~~~L~~l~~~ 145 (402)
+++..+.+.|+++++..+..|+..|-.++..-..+....+....++..|++++... .++.++..++..+...+..
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999987654223344555668888899999763 3378999999988877653
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=87.51 E-value=13 Score=30.08 Aligned_cols=116 Identities=15% Similarity=0.175 Sum_probs=71.6
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhC--CchHHHHHhhCC-CCHHHHHHHHHHHHHhh---CCC
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH--GAVPIFVRLLSS-PTDDVREQAVWALGNVA---GDS 188 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~---~~~ 188 (402)
.+..+..+|++.+ +.-+-.++..+..++..++ .+.+.+. .-+..++.+|+. +...+.+.++.+|..|. .+.
T Consensus 26 l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4667788888887 7778888888877776432 2344333 357788888886 45667888888888876 344
Q ss_pred chhhHHHHhcCChHHHHHHhccc-hhhHHHHHHHHHHHHhhhCCCCC
Q 015687 189 PKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQP 234 (402)
Q Consensus 189 ~~~~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~ 234 (402)
|+....+... .++.++..+.+- .+......++.+|..+....|..
T Consensus 103 p~l~Rei~tp-~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 103 PTLTREIATP-NLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTT 148 (165)
T ss_pred CchHHHHhhc-cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCcc
Confidence 4443333322 234433333111 11566677777787777765443
|
|
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=87.41 E-value=2.4 Score=33.11 Aligned_cols=74 Identities=12% Similarity=0.023 Sum_probs=58.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR-----DDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~~~~~~a~~~L~~l~~ 144 (402)
+++..+.+.|++.++..+..|+..|-.++..-.......+...+++..|++++.. ..++.++..++..+..-+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999988764333445667788899999999963 1237899988888877664
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=86.92 E-value=61 Score=36.83 Aligned_cols=266 Identities=12% Similarity=0.106 Sum_probs=143.5
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCcc---hHHHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCC
Q 015687 125 RDDFPQLQFEAAWALTNIASGTSEN---TRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 200 (402)
Q Consensus 125 ~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~ 200 (402)
+.+ ..+...|+..|..++..--+. ...-.+...+.+|..++. +.+.++++..+.++.++..... ..+ .. +
T Consensus 1148 ~~n-~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nI-kS-G 1221 (1780)
T PLN03076 1148 SEN-LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNV-KS-G 1221 (1780)
T ss_pred Ccc-hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhh-hc-C
Confidence 334 678888888888777532211 111122346677777665 4788999999999999874322 122 22 5
Q ss_pred hHHHHHHhc---cchhhHHHHHHHHHHHHhhhCC-CCC---chhhhhchHHHHHHhccCC-ChhHHHHHHHHHHHhc---
Q 015687 201 LMPLLAQFN---EHAKLSMLRNATWTLSNFCRGK-PQP---LFEQTRPALPALERLIHSN-DDEVLTDACWALSYLS--- 269 (402)
Q Consensus 201 i~~L~~~l~---~~~~~~~~~~a~~~L~~l~~~~-~~~---~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~l~~l~--- 269 (402)
...+..++. ...++.+...+..++..++.+. +.. .......++..+..+.... +.++--.++..|.+++
T Consensus 1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 556666553 3456778888888888777653 211 1233345555555555333 4555555555555331
Q ss_pred -cCCh-----------------------HHH-----HHHHHhCcHHHHHHh---cCCCChhhHHHHHHHHHHhhcC----
Q 015687 270 -DGTN-----------------------DKI-----QAVIEAGVCPRLVEL---LRHPSPSVLIPALRTVGNIVTG---- 313 (402)
Q Consensus 270 -~~~~-----------------------~~~-----~~~~~~~~i~~L~~~---L~~~~~~v~~~a~~~l~nl~~~---- 313 (402)
.+.. ... ........++.|..+ ..++..+||..|+.+|-.+...
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 1100 000 000011233333333 4567789999999988777632
Q ss_pred -ChHHHHHHHhCCChHHHHHHhcCCC----------------------chhHHHHHHHHHHHHhc---CCHHHHHHHHHc
Q 015687 314 -DDMQTQCIINHQALPCLLDLLTQNY----------------------KKSIKKEACWTISNITA---GNVNQIQAIIEA 367 (402)
Q Consensus 314 -~~~~~~~i~~~~~l~~L~~ll~~~~----------------------~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~ 367 (402)
+++....++. +++-++...+.+.. +..+...+..+|.+++. .--+.+..+++
T Consensus 1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~- 1459 (1780)
T PLN03076 1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK- 1459 (1780)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 2233444444 45555555443210 00123333344444443 22333333333
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 368 GIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 368 ~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
+++..|...+..++..+...++.+|.+++..
T Consensus 1460 ~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076 1460 KVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 3566666666668888888888888887653
|
|
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=86.54 E-value=13 Score=28.86 Aligned_cols=74 Identities=16% Similarity=0.111 Sum_probs=58.7
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhhHHHHhcCChHHHHHHhccchhhH-HHHHHHHHHHHhhhCC
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLS-MLRNATWTLSNFCRGK 231 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~-~~~~a~~~L~~l~~~~ 231 (402)
++..|.+-|.++++.++..|+..|-.+..+ ++.++..+...++++.|..++....+.. ++..++..+.......
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 566677777889999999999999999877 4557788888889999999986555444 8888888887777654
|
Unpublished observations. Domain of unknown function. |
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=86.26 E-value=8.7 Score=31.46 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=53.7
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcC-CCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 015687 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASG-TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191 (402)
Q Consensus 114 g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 191 (402)
..+|.|.+=|...+ ...+..|...+..+... ..+..-.++ ..+|.++...|++.++++...++.+|..|+..++..
T Consensus 38 ~~Lpif~dGL~Et~-~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 38 HYLPIFFDGLRETE-HPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hHHHHHHhhhhccC-ccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 35788888887777 56677777777777654 222222222 256777888889999999999999999996555433
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=86.06 E-value=5.5 Score=31.36 Aligned_cols=74 Identities=12% Similarity=0.112 Sum_probs=61.5
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
++..|..=|.+.++.++..|+..|-.+..++. .++..+...+++..|+.++....+..++..+...+...+...
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 56777777788899999999999999987654 477788888899999999966578899999998888887765
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region [] | Back alignment and domain information |
|---|
Probab=85.82 E-value=27 Score=31.61 Aligned_cols=155 Identities=12% Similarity=0.043 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCC-----------chHHHHHhhC------CCCHHHHHHHHHHHHHhhCCCchh
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHG-----------AVPIFVRLLS------SPTDDVREQAVWALGNVAGDSPKC 191 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g-----------~i~~L~~lL~------~~~~~v~~~a~~~L~nl~~~~~~~ 191 (402)
-++|..|+.|+.....++++.+..+++.- ....|+..|- +.|+--...|+.+|.++..+++..
T Consensus 52 f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~ 131 (312)
T PF04869_consen 52 FDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEA 131 (312)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 57889999999999988888777766521 1112333222 223333445666666666666655
Q ss_pred hHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhc----c-CCChhHHHHHHHHHH
Q 015687 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----H-SNDDEVLTDACWALS 266 (402)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL----~-~~~~~v~~~a~~~l~ 266 (402)
++.+..- .......... ....++.+..+| . +.|+.+...-+..|+
T Consensus 132 Ke~al~V--------------------------~~~~~~~ge~----~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~ 181 (312)
T PF04869_consen 132 KEQALRV--------------------------TEGDESSGEE----PVTLIQTVSELLIASLRRNSDPRIQIGYLMLLI 181 (312)
T ss_dssp HHHHTT----------------------------EE--STTS------EEHHHHHHHHTTT----T--HHHHHHHHHHHH
T ss_pred HHHHHcc--------------------------cCCCCCCCCC----cccHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence 4444331 0000000111 122334444433 2 446777777778887
Q ss_pred HhccCChHHHHHHHHh-CcHHHHHHhcC---CCChhhHHHHHHHHHHhhcC
Q 015687 267 YLSDGTNDKIQAVIEA-GVCPRLVELLR---HPSPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 267 ~l~~~~~~~~~~~~~~-~~i~~L~~~L~---~~~~~v~~~a~~~l~nl~~~ 313 (402)
....+++..+..+++. ..++.|+.... +.+..++--+...||-+...
T Consensus 182 ~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef 232 (312)
T PF04869_consen 182 VWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEF 232 (312)
T ss_dssp HHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHh
Confidence 7777777777777776 47888888753 33456777777778877653
|
p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A. |
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=85.65 E-value=9.5 Score=33.97 Aligned_cols=136 Identities=15% Similarity=0.164 Sum_probs=73.1
Q ss_pred ChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch--hhhhc----hHHHHHHhcc--------CCChhHHHHHHHHH
Q 015687 200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF--EQTRP----ALPALERLIH--------SNDDEVLTDACWAL 265 (402)
Q Consensus 200 ~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~----~l~~L~~lL~--------~~~~~v~~~a~~~l 265 (402)
++|+++.++ ++.++.++..++.+|..+....+.... ....| +.+.+.+++. .+...+...+.-++
T Consensus 120 iiP~iL~ll-DD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLL-DDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHh-cCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 688999999 777999999999999999987654440 11122 2334445554 33456777777777
Q ss_pred HHhcc-----CCh---HHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC
Q 015687 266 SYLSD-----GTN---DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 337 (402)
Q Consensus 266 ~~l~~-----~~~---~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~ 337 (402)
..++. ... .....++..|++..+...-+...+.++...+..+..++..-....-.-++ .+++.+.+.+.++
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~-rii~~l~~~l~np 277 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQ-RIIPVLSQILENP 277 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHhcCC
Confidence 77632 111 11222233333332222222223566666666666665431111111111 4566666666554
|
|
| >KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.36 E-value=42 Score=33.43 Aligned_cols=291 Identities=11% Similarity=0.105 Sum_probs=144.2
Q ss_pred ccHHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
..++.+.+.|. +.|+..+..|-..|+.+. .+ ++ .+....-++..++.+--+..|..+|..+.++.. .
T Consensus 5 aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s-~s-pe---------clskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~ 72 (1082)
T KOG1410|consen 5 AQLESLCKDLYESTDPTARHRAEKALAELS-ES-PE---------CLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-P 72 (1082)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHc-cC-HH---------HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-C
Confidence 34567776665 689999999999999883 22 12 233444445555546667788888888777533 1
Q ss_pred hHHHHhCCchHHHHHhhCCCCHH----HHHHHHHHHHHhhCCCch--hhHHHHhcCChHHHHHHhccchhhHHHHHHHHH
Q 015687 150 TRVVIDHGAVPIFVRLLSSPTDD----VREQAVWALGNVAGDSPK--CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT 223 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~----v~~~a~~~L~nl~~~~~~--~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~ 223 (402)
........+-.+++.++....|+ +....+..++.+.+-... .++...-...+..+.+.+ +..+.+--..+...
T Consensus 73 lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~i 151 (1082)
T KOG1410|consen 73 LPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQI 151 (1082)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHH
Confidence 11122223455666666654433 333444445555432111 111111222455556666 33333333334444
Q ss_pred HHHhhhCC-------CCCchh---------hhhchHHHHHHhccCC------C---hhHHHHHHHHHHHhc---------
Q 015687 224 LSNFCRGK-------PQPLFE---------QTRPALPALERLIHSN------D---DEVLTDACWALSYLS--------- 269 (402)
Q Consensus 224 L~~l~~~~-------~~~~~~---------~~~~~l~~L~~lL~~~------~---~~v~~~a~~~l~~l~--------- 269 (402)
|..|...- |..... ....++..-..+|+.. | ..+...++..-.++.
T Consensus 152 LsqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~ 231 (1082)
T KOG1410|consen 152 LSQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSST 231 (1082)
T ss_pred HHHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccccc
Confidence 44444321 110000 0111222222222211 1 122233332222211
Q ss_pred c----------CChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC------ChHHHHHHHhCCChHHHHHH
Q 015687 270 D----------GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG------DDMQTQCIINHQALPCLLDL 333 (402)
Q Consensus 270 ~----------~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~------~~~~~~~i~~~~~l~~L~~l 333 (402)
+ -+......+.+...++...++..+-.+..-..++.++..+++- +++. ...+. .++.-...+
T Consensus 232 DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeR-a~yl~-~Lv~Gvk~i 309 (1082)
T KOG1410|consen 232 DESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAER-AKYLQ-HLVEGVKRI 309 (1082)
T ss_pred ccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHH-HHHHH-HHHHHHHHH
Confidence 1 1122333455667788888888888888888899999888752 2222 22222 344445556
Q ss_pred hcCC---CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhc
Q 015687 334 LTQN---YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 378 (402)
Q Consensus 334 l~~~---~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 378 (402)
+.++ .++.--.+-|..|+.+-. ..+...++.....|.+++++.
T Consensus 310 l~np~~LsD~~nyHeFCRllaRlkt--NYQL~ELv~v~~Y~e~irLiA 355 (1082)
T KOG1410|consen 310 LENPQGLSDPANYHEFCRLLARLKT--NYQLGELVKVECYPEVIRLIA 355 (1082)
T ss_pred HhCCcCCCCcchHHHHHHHHHHHHh--hhhhHhhhccCCcHHHHHHHH
Confidence 6554 245555666777666543 244555555555555555553
|
|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=85.07 E-value=4.1 Score=41.70 Aligned_cols=130 Identities=13% Similarity=0.116 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhc
Q 015687 171 DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 250 (402)
Q Consensus 171 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL 250 (402)
+.++.++.-+|+++|-...... ...+|.+++-|..+....++.+..-++..+|... .......+|.+...|
T Consensus 945 ~~vra~~vvTlakmcLah~~La-----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLA-----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHh
Confidence 5688899999999986544322 2268899999988888889999998888888662 234467899999999
Q ss_pred cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 015687 251 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 251 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~ 313 (402)
.++++-|+..++-.|++|....-.+.. -.++-+++--|-+.+++++..|=++++.+...
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~~vKw~----G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVKWN----GELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhhhhhcc----hhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 999999999999999998854321111 11233334444456777888888888877653
|
|
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=84.84 E-value=28 Score=40.26 Aligned_cols=212 Identities=13% Similarity=0.079 Sum_probs=124.6
Q ss_pred HHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCC----Cch--hhhhchHHHHH
Q 015687 174 REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ----PLF--EQTRPALPALE 247 (402)
Q Consensus 174 ~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~----~~~--~~~~~~l~~L~ 247 (402)
...|.++++++-...... .-.+..++.-.....+.+++.++..+++.+....+. .+. ..+...+..+.
T Consensus 461 ~~~a~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll 534 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSL------TLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALL 534 (2341)
T ss_pred HHHHHHHHhhhhhhhhhH------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHH
Confidence 556888888875432211 113344344333667888888887666666555322 111 11333344433
Q ss_pred Hhc-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCC
Q 015687 248 RLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA 326 (402)
Q Consensus 248 ~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~ 326 (402)
.+- .+.++.++......+. ......+...+.+..+...+....-.++..+...+|+++..++.+.-.-+....
T Consensus 535 ~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~ 608 (2341)
T KOG0891|consen 535 TVAIADTDPDIRIRVLSSLN------ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTL 608 (2341)
T ss_pred HHhccCCCcchhhhHHhhhc------cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHH
Confidence 332 3456776666555443 222234555566666777778888889999999999999988855544444444
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 327 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 327 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
+..+-.+-.+. -..++..+..-+..+..+.+..+...++. .+..++..+.+.+..+.+.+..++..|+..|
T Consensus 609 l~~~s~l~~sg-~~r~~~~~a~~~~~~i~~~~~~i~~~v~~-~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~ 679 (2341)
T KOG0891|consen 609 LELLTELEFSG-MARTKEESAKLLCELIISSPVLISPYVGP-ILLVLLPKLQDPSSGVEKAVLETIGELCAVG 679 (2341)
T ss_pred HHHhchhhhcc-hHHhHHHHHHHhhHHHHHHHHHHHhhcCc-hHHHHHHHHhccchhhHHHHHHHHHHHHHhc
Confidence 44444444444 34444444444444444455555555544 4566777778888888888888888887654
|
|
| >PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=84.48 E-value=13 Score=29.14 Aligned_cols=74 Identities=15% Similarity=0.112 Sum_probs=58.1
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhhHHHHhcCChHHHHHHhccchhhH---HHHHHHHHHHHhhhCC
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLS---MLRNATWTLSNFCRGK 231 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~---~~~~a~~~L~~l~~~~ 231 (402)
++..|.+-|.+.++.++..|+.+|-.+..++ +.++..+....++..|..++....... ++..+...+.......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 5677777888899999999999999998775 567778877788899999885444333 8888888877777665
|
Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A .... |
| >cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain | Back alignment and domain information |
|---|
Probab=83.87 E-value=17 Score=27.65 Aligned_cols=93 Identities=16% Similarity=0.101 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHH-cCCHHHHHHHh
Q 015687 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIE-AGIIGPLVNLL 377 (402)
Q Consensus 300 ~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~-~~~i~~L~~ll 377 (402)
--..+.-|.+++..+......+ .+.|.+-|++. ++.|+..+..+|-++|. |+++....+.. ..+|..+.+.-
T Consensus 18 pgy~~~Eia~~t~~s~~~~~ei-----~d~L~kRL~~~-~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~ 91 (122)
T cd03572 18 PGYLYEEIAKLTRKSVGSCQEL-----LEYLLKRLKRS-SPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYK 91 (122)
T ss_pred chHHHHHHHHHHHcCHHHHHHH-----HHHHHHHhcCC-CCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcC
Confidence 3345556667776665555534 45788999988 89999999999999997 67777666664 33444444443
Q ss_pred ccCC--------HHHHHHHHHHHHHhhcC
Q 015687 378 LNAE--------FEIKKEAAWAISNATSG 398 (402)
Q Consensus 378 ~~~~--------~~v~~~a~~aL~nl~~~ 398 (402)
...| ..||.+|-.++.-|...
T Consensus 92 g~~Dp~~Gd~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 92 GPPDPLKGDSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred CCCCcccCcchhHHHHHHHHHHHHHHhcc
Confidence 3122 36888888887766543
|
The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t |
| >PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes [] | Back alignment and domain information |
|---|
Probab=83.50 E-value=24 Score=36.34 Aligned_cols=143 Identities=17% Similarity=0.186 Sum_probs=90.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 153 (402)
..+...+.++++......+.++..+...+.-++.. ...-++.-..-.+..- ..+......+|..++...++....+
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~~l 519 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLKEL 519 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 45566666777777777777777775554222222 1111111122222211 4566777889999998877777666
Q ss_pred Hh-CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 154 ID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 154 ~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.. .++...++.++-+++.++.+.|...|....... .|.. .+-.++ +..-........+.+..+....
T Consensus 520 ~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~--~R~e--------~i~~ll-~~~~~~tL~ai~~~l~~~~~~~ 587 (727)
T PF12726_consen 520 LSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD--GRLE--------AIQALL-QSNFSPTLSAINWSLRQLTKLK 587 (727)
T ss_pred HcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC--cHHH--------HHHHHH-HHhHHHHHHHHHHHHHHHHhhh
Confidence 65 688999999999999999999999999987532 2222 223333 3334455677777887777664
|
The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain. |
| >KOG1988 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.79 E-value=61 Score=33.26 Aligned_cols=252 Identities=13% Similarity=0.119 Sum_probs=146.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
...+=++++++....+-.++..+-++.... +.+ .++.+ .+=.|.+....++ ..++...+++...- ..+...
T Consensus 26 ~~~ldkGlr~~~t~eqpeavvr~~RLFek~-Pfp--ifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q~----g~hln~ 96 (970)
T KOG1988|consen 26 LMELDKGLRSGKTSEQPEAVVRFPRLFEKY-PFP--IFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQS----GKHLNK 96 (970)
T ss_pred HHHHhhcccccccccchHHHHHHHHHHhhC-Cch--hhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhhc----cccchh
Confidence 345556788777777778887777775432 222 34333 2345666667777 67888777777632 222233
Q ss_pred HHh-CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 153 VID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 153 ~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
+.. ...+........+.|+.-+..++..+|.+..--| +..-...++..=..+.+.--.+.++.+....+...
T Consensus 97 v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~s 169 (970)
T KOG1988|consen 97 VLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQS 169 (970)
T ss_pred hhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhh
Confidence 332 2344455555667899999999999998864444 33445556655334444445566677766666542
Q ss_pred CCCchhhhhchHHHHHHhccCCC--hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCChhhHHHHHHHHH
Q 015687 232 PQPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVG 308 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~l~ 308 (402)
. ....++...+..++...+ +...-..+.+++.+..... ....+......++. .+..+....-+.++.
T Consensus 170 k----~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at------~A~ra~~l~m~lv~~tps~d~~v~fL~stT 239 (970)
T KOG1988|consen 170 K----DFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHAT------GASRAFGLCMSLVSGTPSIDRVVAFLYSTT 239 (970)
T ss_pred h----hhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhh------hhHHHHHHHHHHhcCCCcccceeeehhhhH
Confidence 1 111233334445554443 3445566677777764322 11223445555553 334445556677777
Q ss_pred HhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 309 nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
+++...-.. -.+-++.+.+.++.+....++..+.|.+.+++.
T Consensus 240 ~Lasrs~~a-----i~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 240 NLASRSLVA-----ISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHHHHH-----hHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 777533221 224566788888866466778888888888875
|
|
| >KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.19 E-value=39 Score=31.42 Aligned_cols=154 Identities=16% Similarity=0.084 Sum_probs=90.9
Q ss_pred HHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhcc----------CCChhHHHHHHHHHHHhccCC
Q 015687 203 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------SNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 203 ~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~----------~~~~~v~~~a~~~l~~l~~~~ 272 (402)
.++..|.+......+..++.++.-|+++...-.-....+.+..|+.+-. ..|..+...++.+|+|+..++
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 4455553333344455666667777776533333333444444444321 135678999999999999998
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCC-----ChhhHHHHHHHHHHhhc-CChHHHHHHHhCCChHHHHHHhcCCC--------
Q 015687 273 NDKIQAVIEAGVCPRLVELLRHP-----SPSVLIPALRTVGNIVT-GDDMQTQCIINHQALPCLLDLLTQNY-------- 338 (402)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~~L~~~-----~~~v~~~a~~~l~nl~~-~~~~~~~~i~~~~~l~~L~~ll~~~~-------- 338 (402)
....+...+......+.+.+... -..+...=++.|--+.. ..+...+.+.+.++++.+-+++.+..
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~ 208 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV 208 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence 88877788887777777765211 11122222222222222 22445556678899999999996541
Q ss_pred ------chhHHHHHHHHHHHHhcC
Q 015687 339 ------KKSIKKEACWTISNITAG 356 (402)
Q Consensus 339 ------~~~v~~~a~~~L~nl~~~ 356 (402)
+-..-.++..++.|++.+
T Consensus 209 ~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 209 PPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred CCCCHHHHHHHHHHHHHHhheeec
Confidence 113446778888888863
|
|
| >KOG1788 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.08 E-value=57 Score=34.47 Aligned_cols=254 Identities=13% Similarity=0.143 Sum_probs=140.9
Q ss_pred HHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC----
Q 015687 93 TQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS---- 168 (402)
Q Consensus 93 ~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~---- 168 (402)
.+|..++... ..+.+.+.+..++..++.++-+ ++-+...++++..+....+.+.. ..-+-.++..|++
T Consensus 664 DcLisllKnn-teNqklFreanGvklilpflin---dehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt 735 (2799)
T KOG1788|consen 664 DCLISLLKNN-TENQKLFREANGVKLILPFLIN---DEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVT 735 (2799)
T ss_pred HHHHHHHhcc-chhhHHHHhhcCceEEEEeeec---hHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhccee
Confidence 4455555443 6667777787778777777743 34466666666666554454322 1224445555554
Q ss_pred ----CC----HHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc---------chhh----HHHHHHHHHHH-H
Q 015687 169 ----PT----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---------HAKL----SMLRNATWTLS-N 226 (402)
Q Consensus 169 ----~~----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~---------~~~~----~~~~~a~~~L~-~ 226 (402)
++ ..+....+.+++.+.+-+...+..+-+.|++..|+..|.. ..|. ++.......+. .
T Consensus 736 ~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTla 815 (2799)
T KOG1788|consen 736 RISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLA 815 (2799)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHH
Confidence 12 2234445566777776666677888888888888776621 1121 11111111111 1
Q ss_pred hhhCCCCCchhh---hh----------c---------hHHHHH----HhccCCChhHHHHHHHHHHHhcc----------
Q 015687 227 FCRGKPQPLFEQ---TR----------P---------ALPALE----RLIHSNDDEVLTDACWALSYLSD---------- 270 (402)
Q Consensus 227 l~~~~~~~~~~~---~~----------~---------~l~~L~----~lL~~~~~~v~~~a~~~l~~l~~---------- 270 (402)
.|.+..+..... .. + .+..+. +.+-+++-.--..||..+..+-+
T Consensus 816 vcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsG 895 (2799)
T KOG1788|consen 816 VCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSG 895 (2799)
T ss_pred HhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCC
Confidence 222221111100 00 1 111111 11122222222334444433321
Q ss_pred CChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc---CCCchhHHHHHH
Q 015687 271 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT---QNYKKSIKKEAC 347 (402)
Q Consensus 271 ~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~---~~~~~~v~~~a~ 347 (402)
......+.+...|++..++..+-...++.+..-++.+..++..++......-..|.++.|+.++. ++ +......+.
T Consensus 896 qfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsg-sspfLshal 974 (2799)
T KOG1788|consen 896 QFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSG-SSPFLSHAL 974 (2799)
T ss_pred CcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcC-CchHhhccH
Confidence 11123456788999999999988888999999999999999998877776777788888887763 23 334555666
Q ss_pred HHHHHHhc
Q 015687 348 WTISNITA 355 (402)
Q Consensus 348 ~~L~nl~~ 355 (402)
.++..+++
T Consensus 975 kIvemLga 982 (2799)
T KOG1788|consen 975 KIVEMLGA 982 (2799)
T ss_pred HHHHHHhh
Confidence 66666665
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.03 E-value=57 Score=32.41 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHH---hCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHH
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVI---DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 205 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~---~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~ 205 (402)
.+++.-|+.+|+-+..+.+-+....- .+..+..++..+. .++..+-.++++|.|+..+ +..+..+... ...++
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL 633 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence 57888888888887775443332222 1234455555554 4567777899999999888 4456665543 33333
Q ss_pred HHhc---cchhhHHHHHHHHHHHHhhhCC--CCCchhhhhchHHHHHHhccC-CChhHHHHHHHHHHHhccCChHHHHHH
Q 015687 206 AQFN---EHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAV 279 (402)
Q Consensus 206 ~~l~---~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~ 279 (402)
..+. ..++..++....-...|++-.- ...+......+...+..++.. +|-+.....+-+|++|+..+...++ +
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~-~ 712 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ-L 712 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH-H
Confidence 3331 2233344444333333333221 122222222222333333332 2445566777888888877655444 4
Q ss_pred HHhCcHHHHHHhcC
Q 015687 280 IEAGVCPRLVELLR 293 (402)
Q Consensus 280 ~~~~~i~~L~~~L~ 293 (402)
...--++.++..+.
T Consensus 713 A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 713 AKNRSVDSIAKKLK 726 (745)
T ss_pred HHhcCHHHHHHHHH
Confidence 33334566666553
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=81.08 E-value=29 Score=28.47 Aligned_cols=73 Identities=10% Similarity=0.081 Sum_probs=53.9
Q ss_pred cHHHHHHhcCCCChhhHHHHHHHHHHhhcC-ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 015687 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358 (402)
Q Consensus 284 ~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~-~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 358 (402)
.++.+++-|...+...+--|...+..+... ..+.+-.++ ..++..|...|++. ++++...+..+|..|+..++
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhh
Confidence 567777777777777777777777777765 333333333 37788888999999 99999999999999965433
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=80.79 E-value=45 Score=32.58 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 169 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.+...|..+..+||.|+...|.. ..-+.+.+..|..-| ..++++++.++-.+|+.+....
T Consensus 386 ~~~~lR~~aYe~lG~L~~~~p~l--~~~d~~li~~LF~sL-~~~~~evr~sIqeALssl~~af 445 (501)
T PF13001_consen 386 EDIELRSLAYETLGLLAKRAPSL--FSKDLSLIEFLFDSL-EDESPEVRVSIQEALSSLAPAF 445 (501)
T ss_pred ccHHHHHHHHHHHHHHHccCccc--ccccHHHHHHHHHHh-hCcchHHHHHHHHHHHHHHHHH
Confidence 57889999999999999887753 112345778888888 7778889999888998888775
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 402 | ||||
| 4b8j_A | 528 | Rimp_alpha1a Length = 528 | 0.0 | ||
| 4b8j_A | 528 | Rimp_alpha1a Length = 528 | 4e-13 | ||
| 2yns_A | 490 | Rimp_alpha_b54nls Length = 490 | 1e-170 | ||
| 1wa5_B | 530 | Crystal Structure Of The Exportin Cse1p Complexed W | 1e-106 | ||
| 1wa5_B | 530 | Crystal Structure Of The Exportin Cse1p Complexed W | 7e-04 | ||
| 3tj3_A | 447 | Structure Of Importin A5 Bound To The N-Terminus Of | 1e-98 | ||
| 2jdq_A | 450 | C-Terminal Domain Of Influenza A Virus Polymerase P | 1e-98 | ||
| 1bk5_A | 422 | Karyopherin Alpha From Saccharomyces Cerevisiae Len | 3e-98 | ||
| 1bk6_A | 422 | Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng | 4e-98 | ||
| 1ee4_A | 423 | Crystal Structure Of Yeast Karyopherin (Importin) A | 1e-97 | ||
| 1ee5_A | 424 | Yeast Karyopherin (Importin) Alpha In A Complex Wit | 2e-97 | ||
| 1un0_A | 443 | Crystal Structure Of Yeast Karyopherin (Importin) A | 3e-97 | ||
| 2c1t_A | 454 | Structure Of The Kap60p:nup2 Complex Length = 454 | 3e-97 | ||
| 3tpo_A | 529 | Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP | 6e-93 | ||
| 2ynr_A | 461 | Mimp_alphadibb_b54nls Length = 461 | 1e-88 | ||
| 4ba3_A | 496 | Mimp_alphadibb_a89nls Length = 496 | 1e-88 | ||
| 3rz9_A | 510 | Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt | 2e-88 | ||
| 1ial_A | 453 | Importin Alpha, Mouse Length = 453 | 2e-88 | ||
| 1q1s_C | 466 | Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid | 2e-88 | ||
| 4htv_A | 509 | Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex | 2e-88 | ||
| 3ukw_B | 510 | Mouse Importin Alpha: Bimax1 Peptide Complex Length | 2e-88 | ||
| 1ejl_I | 460 | Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti | 2e-88 | ||
| 3ve6_A | 426 | Crystal Structure Analysis Of Venezuelan Equine Enc | 2e-88 | ||
| 3l3q_A | 427 | Mouse Importin Alpha-Peptm Nls Peptide Complex Leng | 2e-88 | ||
| 3btr_C | 427 | Ar-Nls:importin-Alpha Complex Length = 427 | 2e-88 | ||
| 3tpm_A | 422 | Crystal Structure Of Mal Rpel Domain In Complex Wit | 2e-88 | ||
| 1y2a_C | 428 | Structure Of Mammalian Importin Bound To The Non-Cl | 3e-88 | ||
| 2c1m_A | 424 | Nup50:importin-Alpha Complex Length = 424 | 3e-88 | ||
| 3fex_C | 467 | Crystal Structure Of The Cbc-Importin Alpha Complex | 1e-86 | ||
| 4db8_A | 252 | Designed Armadillo-Repeat Protein Length = 252 | 5e-36 | ||
| 4db8_A | 252 | Designed Armadillo-Repeat Protein Length = 252 | 6e-34 | ||
| 4db8_A | 252 | Designed Armadillo-Repeat Protein Length = 252 | 7e-27 | ||
| 4dba_A | 210 | Designed Armadillo Repeat Protein (Yiim3aii) Length | 8e-26 | ||
| 4dba_A | 210 | Designed Armadillo Repeat Protein (Yiim3aii) Length | 4e-22 | ||
| 4db9_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aiii) Leng | 1e-22 | ||
| 4db9_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aiii) Leng | 2e-22 | ||
| 4db6_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aii) Lengt | 3e-22 | ||
| 4hxt_A | 252 | Crystal Structure Of Engineered Protein. Northeast | 2e-21 | ||
| 4hxt_A | 252 | Crystal Structure Of Engineered Protein. Northeast | 9e-15 |
| >pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528 | Back alignment and structure |
|
| >pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528 | Back alignment and structure |
|
| >pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490 | Back alignment and structure |
|
| >pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530 | Back alignment and structure |
|
| >pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530 | Back alignment and structure |
|
| >pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447 | Back alignment and structure |
|
| >pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450 | Back alignment and structure |
|
| >pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422 | Back alignment and structure |
|
| >pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422 | Back alignment and structure |
|
| >pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423 | Back alignment and structure |
|
| >pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424 | Back alignment and structure |
|
| >pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443 | Back alignment and structure |
|
| >pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454 | Back alignment and structure |
|
| >pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529 | Back alignment and structure |
|
| >pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461 | Back alignment and structure |
|
| >pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496 | Back alignment and structure |
|
| >pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510 | Back alignment and structure |
|
| >pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453 | Back alignment and structure |
|
| >pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466 | Back alignment and structure |
|
| >pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509 | Back alignment and structure |
|
| >pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510 | Back alignment and structure |
|
| >pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460 | Back alignment and structure |
|
| >pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426 | Back alignment and structure |
|
| >pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427 | Back alignment and structure |
|
| >pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427 | Back alignment and structure |
|
| >pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422 | Back alignment and structure |
|
| >pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428 | Back alignment and structure |
|
| >pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424 | Back alignment and structure |
|
| >pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467 | Back alignment and structure |
|
| >pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252 | Back alignment and structure |
|
| >pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252 | Back alignment and structure |
|
| >pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252 | Back alignment and structure |
|
| >pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210 | Back alignment and structure |
|
| >pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210 | Back alignment and structure |
|
| >pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210 | Back alignment and structure |
|
| >pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210 | Back alignment and structure |
|
| >pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210 | Back alignment and structure |
|
| >pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 | Back alignment and structure |
|
| >pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 464 bits (1196), Expect = e-162
Identities = 215/405 (53%), Positives = 272/405 (67%), Gaps = 14/405 (3%)
Query: 9 TEVRRSKYK--VAVDAEEGRRRREDNMVEIRKNKREESLLKKRR---------EGLQAHQ 57
E RR+ +K A+E RRRR+ VE+RK KR+E+L K+R +
Sbjct: 14 PEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDES 73
Query: 58 PLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVP 117
++ ++ + LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVP
Sbjct: 74 SVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 133
Query: 118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 177
R +EF+ + LQ EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA
Sbjct: 134 RLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 193
Query: 178 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLF 236
+WALGNVAGDS RD VL A+ P+L FN + K S++R ATWTLSN CRGK PQP +
Sbjct: 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDW 252
Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
ALP L +LI+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 312
Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
V PALR VGNIVTG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAG
Sbjct: 313 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAG 371
Query: 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSS 401
N QIQA+I+A +I PLV LL AE++ KKEA WAISNA+SGG
Sbjct: 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ 416
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 3e-48
Identities = 65/337 (19%), Positives = 125/337 (37%), Gaps = 19/337 (5%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
+P + +++ ++ A + + + + + V+Q + + + + P L
Sbjct: 175 VPLFIQLLYTGSVEVKEQAIWALGNV-AGDSTDYRDYVLQCNAMEPILGLFNSNK-PSLI 232
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
A W L+N+ G + A+P +L+ S + A WA+ ++ +
Sbjct: 233 RTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAI 292
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIH 251
V+ L + H + A + N G Q LPAL L+
Sbjct: 293 QAVIDVRIP-KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS 351
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
S + + +ACW +S ++ G ++IQAVI+A + P LV+LL A + N
Sbjct: 352 SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS 411
Query: 312 TGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI-----------TAGN 357
+G + +++ + L DLL + I + + NI
Sbjct: 412 SGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR-IIEVTLDALENILKMGEADKEARGLNI 470
Query: 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
I +AG + + N N +I ++A I
Sbjct: 471 NENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET 507
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 440 bits (1133), Expect = e-152
Identities = 179/384 (46%), Positives = 242/384 (63%), Gaps = 7/384 (1%)
Query: 23 EEGRRRREDNMVEIRKNKREESLLKKRREGLQ-AHQPLTNSAALDNKKLESLPAMVAGVW 81
G R M E K E + G + + + + S+ +V G+
Sbjct: 8 SSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGIN 67
Query: 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 141
S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +QFE+AWALTN
Sbjct: 68 SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTN 127
Query: 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 201
IASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD RDLV+ +GA+
Sbjct: 128 IASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAI 187
Query: 202 MPLLAQFNEH----AKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDE 256
PLLA LRN TWTLSN CR K P P + LP L RL+H ND E
Sbjct: 188 DPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE 247
Query: 257 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316
VL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR +GNIVTG D
Sbjct: 248 VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE 307
Query: 317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL 376
QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +QIQ ++ G++ LV +
Sbjct: 308 QTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 366
Query: 377 LLNAEFEIKKEAAWAISNATSGGS 400
L A+F+ +KEAAWAI+N TSGG+
Sbjct: 367 LSKADFKTQKEAAWAITNYTSGGT 390
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 5e-51
Identities = 69/338 (20%), Positives = 128/338 (37%), Gaps = 23/338 (6%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
+PA ++ + S +I A + + + S + VI+ G + + L+ D L
Sbjct: 145 IPAFISLLASPHAHISEQAVWALGNI-AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA 203
Query: 133 FE----AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188
W L+N+ + + +P VRLL +V + WA+ +
Sbjct: 204 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 263
Query: 189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR-----PAL 243
+ ++V+ G + P L + +L ++ A + N G EQT+ AL
Sbjct: 264 NERIEMVVKKGVV-PQLVKLLGATELPIVTPALRAIGNIVTGTD----EQTQKVIDAGAL 318
Query: 244 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 303
L+ + + +A W +S ++ G D+IQ V+ G+ P LV +L A
Sbjct: 319 AVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378
Query: 304 LRTVGNIVT-GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI------TAG 356
+ N + G Q +++ + L++LL+ K I + ISNI
Sbjct: 379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK-IIQVILDAISNIFQAAEKLGE 437
Query: 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
I E G + + L + + K + I
Sbjct: 438 TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 475
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 2e-42
Identities = 58/281 (20%), Positives = 119/281 (42%), Gaps = 11/281 (3%)
Query: 99 LSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA 158
L ++P ++P + L +D P++ ++ WA++ + G +E +V+ G
Sbjct: 217 LCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDGPNERIEMVVKKGV 275
Query: 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 218
VP V+LL + + A+ A+GN+ + + V+ GAL + + K ++ +
Sbjct: 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL-AVFPSLLTNPKTNIQK 334
Query: 219 NATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL-SDGTNDKI 276
ATWT+SN G+ Q +P L ++ D + +A WA++ S GT ++I
Sbjct: 335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQI 394
Query: 277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI------VTGDDMQTQCIINHQALPCL 330
++ G+ L+ LL ++ L + NI + + + I L +
Sbjct: 395 VYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 454
Query: 331 LDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG 371
L ++ +S+ K + I + + Q ++
Sbjct: 455 EALQ-RHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSE 494
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 1e-40
Identities = 58/258 (22%), Positives = 116/258 (44%), Gaps = 11/258 (4%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
LP +V + +D + D+ L + + I V++ GVVP+ ++ L + +
Sbjct: 234 LPTLVRLLHHNDPEVLADSCWAISYL-TDGPNERIEMVVKKGVVPQLVKLLGATE-LPIV 291
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
A A+ NI +GT E T+ VID GA+ +F LL++P +++++A W + N+
Sbjct: 292 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI 351
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG--KPQPLFEQTRPALPALERLI 250
V+++G + P L A + A W ++N+ G Q ++ + L L+
Sbjct: 352 QQVVNHGLV-PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL 410
Query: 251 HSNDDEVLTDACWALSYL------SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 304
+ D +++ A+S + T + E G ++ L RH + SV +L
Sbjct: 411 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 470
Query: 305 RTVGNIVTGDDMQTQCII 322
+ + ++ + Q ++
Sbjct: 471 NLIEKYFSVEEEEDQNVV 488
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 93.9 bits (233), Expect = 4e-21
Identities = 41/220 (18%), Positives = 88/220 (40%), Gaps = 11/220 (5%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
+P +V + + + I A +++ +VI +G + F L+ +Q
Sbjct: 276 VPQLVKLLGATELPIVTPALRAIGNIVT-GTDEQTQKVIDAGALAVFPSLLTNPK-TNIQ 333
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA-GDSPKC 191
EA W ++NI +G + + V++HG VP V +LS +++A WA+ N G + +
Sbjct: 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ 393
Query: 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLFEQTRP------ALP 244
++ G + PL+ + +++ +SN + + E+ L
Sbjct: 394 IVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD 452
Query: 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 284
+E L ++ V + + ++ Q V+
Sbjct: 453 KIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETT 492
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 426 bits (1098), Expect = e-148
Identities = 203/331 (61%), Positives = 239/331 (72%), Gaps = 3/331 (0%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQ 130
M+ ++S QL AT +FRKLLS E +PPI+EVI + GVV RF+EFL R +
Sbjct: 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80
Query: 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190
LQFE+AW LTNIASG S TR+VI GAVPIF+ LLSS +DV+EQAVWALGN+AGDS
Sbjct: 81 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140
Query: 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 249
CRD VL L PLL F++ +L+M RNA W LSN CRGK P P F + P L L L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200
Query: 250 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309
+ +D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H V+ PALR VGN
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260
Query: 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 369
IVTGDD+QTQ I+N AL LL LL + K+SIKKEACWTISNITAGN QIQ +I+A I
Sbjct: 261 IVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319
Query: 370 IGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
L+++L AEF +KEAAWAI+NATSGGS
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGS 350
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 209 bits (533), Expect = 2e-63
Identities = 87/318 (27%), Positives = 146/318 (45%), Gaps = 11/318 (3%)
Query: 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 141
++ +Q ++ + + S VIQ+G VP FIE LS + +Q +A WAL N
Sbjct: 76 KENCTLQFESAWVLTNI-ASGNSLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGN 133
Query: 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGA 200
IA ++ V+D +P ++L S + AVWAL N+ + +
Sbjct: 134 IAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPC 193
Query: 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP---QPLFEQTRPALPALERLIHSNDDEV 257
L +L+ + +L +A W LS G Q + + L L+ ND +V
Sbjct: 194 L-NVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDA--GVCRRLVELLMHNDYKV 250
Query: 258 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317
++ A A+ + G + + Q ++ L+ LL P S+ A T+ NI G+ Q
Sbjct: 251 VSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQ 310
Query: 318 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNL 376
Q +I+ P L+ +L Q + +KEA W I+N T+ G+ QI+ ++E G I PL +L
Sbjct: 311 IQTVIDANIFPALISIL-QTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDL 369
Query: 377 LLNAEFEIKKEAAWAISN 394
L + +I + A + N
Sbjct: 370 LTVMDSKIVQVALNGLEN 387
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 2e-53
Identities = 72/339 (21%), Positives = 132/339 (38%), Gaps = 24/339 (7%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
+P + + S+ ++Q A + + + + + V+ ++P ++ S+ + +
Sbjct: 109 VPIFIELLSSEFEDVQEQAVWALGNI-AGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMT 167
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
A WAL+N+ G S + + LL DV A WAL ++
Sbjct: 168 RNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKI 227
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR-----PALPALE 247
V+ G L + H ++ A + N G QT+ AL +L
Sbjct: 228 QAVIDAGVC-RRLVELLMHNDYKVVSPALRAVGNIVTGDD----IQTQVILNCSALQSLL 282
Query: 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
L+ S + + +ACW +S ++ G +IQ VI+A + P L+ +L+ A +
Sbjct: 283 HLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAI 342
Query: 308 GNIVTGDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI----------TAG 356
N +G Q + ++ + L DLLT K I + A + NI
Sbjct: 343 TNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSK-IVQVALNGLENILRLGEQEAKRNGT 401
Query: 357 NVNQI-QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
+N I EA + + L + EI ++A I +
Sbjct: 402 GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 2e-39
Identities = 42/260 (16%), Positives = 92/260 (35%), Gaps = 43/260 (16%)
Query: 141 NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA--GDSPKCRDLVLSN 198
N + + ++ S + + + A + +P +++ +
Sbjct: 4 GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTP 63
Query: 199 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVL 258
G + +E L + +
Sbjct: 64 GVVARF-----------------------------------------VEFLKRKENCTLQ 82
Query: 259 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 318
++ W L+ ++ G + + + VI+AG P +ELL V A+ +GNI M
Sbjct: 83 FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 142
Query: 319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 378
+++ LP LL L ++ + ++ + A W +SN+ G + + + L LL
Sbjct: 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 202
Query: 379 NAEFEIKKEAAWAISNATSG 398
++ ++ +A WA+S + G
Sbjct: 203 VSDTDVLADACWALSYLSDG 222
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 3e-05
Identities = 17/135 (12%), Positives = 40/135 (29%), Gaps = 42/135 (31%)
Query: 269 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP 328
+ + ++ + ++E++ SP + A + +++ +
Sbjct: 6 HEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEP------------- 52
Query: 329 CLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF-EIKKE 387
N + I G++ V L E ++ E
Sbjct: 53 ----------------------------NPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 388 AAWAISNATSGGSSW 402
+AW ++N SG S
Sbjct: 85 SAWVLTNIASGNSLQ 99
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 294 bits (755), Expect = 3e-94
Identities = 50/333 (15%), Positives = 110/333 (33%), Gaps = 9/333 (2%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
+ A+V + + + T LS R + + +SG +P ++ L +
Sbjct: 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL-AIFKSGGIPALVKMLGSPV-DSVL 115
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
F A L N+ V G + V LL+ L +A + + +
Sbjct: 116 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 175
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS 252
++L++G L+ + +L + L + AL +
Sbjct: 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 235
Query: 253 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312
++ + W L LSD + G+ LV+LL +V+ A + N+
Sbjct: 236 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 292
Query: 313 GDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVN---QIQAIIEAG 368
+ + + L+ + + ++ I + A + ++T+ + A+
Sbjct: 293 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 352
Query: 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSS 401
+ +V LL +A + + +
Sbjct: 353 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 385
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 2e-64
Identities = 72/333 (21%), Positives = 122/333 (36%), Gaps = 12/333 (3%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
+P + + +D+ + A +L E S + +V + + + +
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 74
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
A L N+ S E + G +P V++L SP D V A+ L N+ +
Sbjct: 75 RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIH 251
V G L + + L T L G + L AL ++
Sbjct: 134 MAVRLAGGL-QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 192
Query: 252 SNDDEVLT-DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310
+ E L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251
Query: 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 370
D T+ L L+ LL + ++ A +SN+T N + + G I
Sbjct: 252 ---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307
Query: 371 GPLVNLLLNA--EFEIKKEAAWAISNATSGGSS 401
LV +L A +I + A A+ + TS
Sbjct: 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQE 340
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 212 bits (540), Expect = 1e-62
Identities = 59/334 (17%), Positives = 119/334 (35%), Gaps = 13/334 (3%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
+PA+V + S ++ A T LL + + V +G + + + L++ + +
Sbjct: 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM-AVRLAGGLQKMVALLNKTN-VKFL 157
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKC 191
L +A G E+ +++ G V ++ + T + L ++
Sbjct: 158 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSN 216
Query: 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 251
+ ++ G + L +++N WTL N + + L L +L+
Sbjct: 217 KPAIVEAGGM-QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME--GLLGTLVQLLG 273
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGN 309
S+D V+T A LS L+ V + G LV + + PA+ + +
Sbjct: 274 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 333
Query: 310 IVTGDD---MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366
+ + M + H LP ++ LL +A + A + E
Sbjct: 334 LTSRHQEAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLRE 392
Query: 367 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
G I LV LL+ A + ++ + +
Sbjct: 393 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 426
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 206 bits (525), Expect = 1e-60
Identities = 50/296 (16%), Positives = 111/296 (37%), Gaps = 9/296 (3%)
Query: 107 INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL 166
+ + + +P + L+ +D + +AA + ++ + ++ V VR +
Sbjct: 7 DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65
Query: 167 SSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 225
+ D + L N++ + + +G + P L + S+L A TL
Sbjct: 66 QNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGI-PALVKMLGSPVDSVLFYAITTLH 123
Query: 226 NFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 284
N + + + L + L++ + + L L L+ G + ++ +G
Sbjct: 124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 183
Query: 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344
LV ++R + L+ V +++ I+ + L L + + + +
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLVQ 242
Query: 345 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
WT+ N++ Q G++G LV LL + + + AA +SN T
Sbjct: 243 NCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 295
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 188 bits (478), Expect = 6e-54
Identities = 43/252 (17%), Positives = 87/252 (34%), Gaps = 1/252 (0%)
Query: 148 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 207
+ A+P +LL+ V +A + ++ ++ S + ++
Sbjct: 5 YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64
Query: 208 FNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY 267
+ R TL N + L +PAL +++ S D VL A L
Sbjct: 65 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124
Query: 268 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL 327
L AV AG ++V LL + L + + G+ I+
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184
Query: 328 PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 387
L++++ + + + ++ + N+ AI+EAG + L L + + +
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQN 243
Query: 388 AAWAISNATSGG 399
W + N +
Sbjct: 244 CLWTLRNLSDAA 255
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 6e-53
Identities = 62/355 (17%), Positives = 116/355 (32%), Gaps = 33/355 (9%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
A+V + + L T++ K+LS+ S ++++G + L+ +L
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP-AIVEAGGMQALGLHLTDPS-QRLV 241
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
W L N++ T+ G + V+LL S +V A L N+ ++ K +
Sbjct: 242 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298
Query: 193 DLVLSNGALMPLL-AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP----ALPALE 247
+V G + L+ + + A L + + Q LP +
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 358
Query: 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
+L+H L A L + E G PRLV+LL
Sbjct: 359 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 418
Query: 308 GNIVTGDDMQT---------------------QCIINHQALPCLLDLLTQNYKKSIKKEA 346
+ ++ I +P + LL + ++I++ A
Sbjct: 419 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENIQRVA 477
Query: 347 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSS 401
+ + A + +AI G PL LL + + AA + +
Sbjct: 478 AGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQ 531
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 2e-33
Identities = 52/326 (15%), Positives = 100/326 (30%), Gaps = 31/326 (9%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL-SRDDFPQL 131
L +V + SDD N+ A L + V Q G + + + D +
Sbjct: 265 LGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 323
Query: 132 QFEAAWALTNIASGTSENTRV---VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188
A AL ++ S E V H +P+ V+LL P+ +A L
Sbjct: 324 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383
Query: 189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 248
P + GA+ P L Q A R + + +
Sbjct: 384 PANHAPLREQGAI-PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV--------------- 427
Query: 249 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308
+E++ AL L+ +++ + P V+LL P ++ A +
Sbjct: 428 ----RMEEIVEGCTGALHILARDVHNR-IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 482
Query: 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 368
+ + + I A L +LL + + + A + ++ + +
Sbjct: 483 ELAQDKEAA-EAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVE 540
Query: 369 IIGPLVNLLLNAEFEIKKEAAWAISN 394
+ +L + A +
Sbjct: 541 L---TSSLFRTEPMAWNETADLGLDI 563
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 92.3 bits (229), Expect = 2e-20
Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 1/122 (0%)
Query: 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 332
N + A + P L +LL V+ A V + + + + + Q + ++
Sbjct: 4 NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63
Query: 333 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392
+ + T+ N++ AI ++G I LV +L + + A +
Sbjct: 64 TMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122
Query: 393 SN 394
N
Sbjct: 123 HN 124
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 85.4 bits (211), Expect = 4e-18
Identities = 39/221 (17%), Positives = 72/221 (32%), Gaps = 27/221 (12%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
LP +V + + AT + L++ + + G +PR ++ L R Q
Sbjct: 354 LPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAH-QDTQ 411
Query: 133 FEAAWALTNIA---------------------SGTSENTRVVIDHGAVPIFVRLLSSPTD 171
+ T + N V+ +P+FV+LL SP +
Sbjct: 412 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIE 471
Query: 172 DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231
+++ A L +A D + + + + GA L + + A L K
Sbjct: 472 NIQRVAAGVLCELAQD-KEAAEAIEAEGA-TAPLTELLHSRNEGVATYAAAVLFRMSEDK 529
Query: 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272
PQ + R ++ L + A L + G
Sbjct: 530 PQD--YKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQGE 568
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 6e-04
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSS 401
Q A + I L LL + + + +AA + + +S
Sbjct: 6 QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS 47
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 291 bits (746), Expect = 4e-94
Identities = 50/332 (15%), Positives = 109/332 (32%), Gaps = 9/332 (2%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
+ A+V + + + T LS R + + +SG +P ++ L +
Sbjct: 61 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL-AIFKSGGIPALVKMLGSPV-DSVL 118
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
F A L N+ V G + V LL+ L +A + + +
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS 252
++L++G L+ + +L + L + AL +
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 238
Query: 253 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312
++ + W L LSD + G+ LV+LL +V+ A + N+
Sbjct: 239 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295
Query: 313 GDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVN---QIQAIIEAG 368
+ + + L+ + + ++ I + A + ++T+ + A+
Sbjct: 296 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 355
Query: 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
+ +V LL +A + +
Sbjct: 356 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 387
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 231 bits (590), Expect = 6e-71
Identities = 68/332 (20%), Positives = 117/332 (35%), Gaps = 10/332 (3%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
+P + + +D+ + A +L E S + +V + + + +
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 77
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
A L N+ S E + G +P V++L SP D V A+ L N+ +
Sbjct: 78 RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIH 251
V G L + + L T L G L AL ++
Sbjct: 137 MAVRLAGGL-QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
+ E L + + + A++EAG L L PS ++ L T+ N+
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL- 254
Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG 371
D T+ L L+ LL + ++ A +SN+T N + + G I
Sbjct: 255 --SDAATKQEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311
Query: 372 PLVNLLLNA--EFEIKKEAAWAISNATSGGSS 401
LV +L A +I + A A+ + TS
Sbjct: 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQE 343
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 210 bits (535), Expect = 5e-63
Identities = 59/335 (17%), Positives = 117/335 (34%), Gaps = 13/335 (3%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
+PA+V + S ++ A T L + + V +G + + + L++ + +
Sbjct: 103 IPALVKMLGSPVDSVLFYAITTLHNL-LLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFL 160
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKC 191
L +A G E+ +++ G V ++ + T + L ++
Sbjct: 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSN 219
Query: 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 251
+ ++ G + L +++N WTL N + L L +L+
Sbjct: 220 KPAIVEAGGM-QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLG 276
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI--PALRTVGN 309
S+D V+T A LS L+ V + G LV + I PA+ + +
Sbjct: 277 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336
Query: 310 IVTGDD---MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366
+ + M + H LP ++ LL +A + A + E
Sbjct: 337 LTSRHQEAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLRE 395
Query: 367 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSS 401
G I LV LL+ A + ++ + +
Sbjct: 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 430
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 198 bits (504), Expect = 2e-58
Identities = 44/263 (16%), Positives = 91/263 (34%), Gaps = 4/263 (1%)
Query: 138 ALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 197
A+ N+ + + A+P +LL+ V +A + ++ ++ S
Sbjct: 1 AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 198 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEV 257
+ ++ + R TL N + L +PAL +++ S D V
Sbjct: 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117
Query: 258 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317
L A L L AV AG ++V LL + L + + G+
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177
Query: 318 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377
I+ L++++ + + + + + + AI+EAG + L L
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHL 236
Query: 378 LNAEFEIKKEAAWAISNATSGGS 400
+ + + W + N + +
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAAT 259
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 2e-55
Identities = 50/296 (16%), Positives = 109/296 (36%), Gaps = 9/296 (3%)
Query: 107 INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL 166
+ + + +P + L+ +D + +AA + ++ + ++ V VR +
Sbjct: 10 DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68
Query: 167 SSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 225
+ D + L N++ + + +G + P L + S+L A TL
Sbjct: 69 QNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGI-PALVKMLGSPVDSVLFYAITTLH 126
Query: 226 NFCRGKPQPLFEQTRP-ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 284
N + L + L++ + + L L L+ G + ++ +G
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186
Query: 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344
LV ++R + L+ V +++ I+ + L L + + + +
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLVQ 245
Query: 345 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
WT+ N++ Q G++G LV LL + + + AA +SN T
Sbjct: 246 NCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 181 bits (460), Expect = 4e-52
Identities = 61/348 (17%), Positives = 115/348 (33%), Gaps = 33/348 (9%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
A+V + + L T++ K+LS+ S ++++G + L+ +L
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS-QRLV 244
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
W L N++ T+ G + V+LL S +V A L N+ ++ K +
Sbjct: 245 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301
Query: 193 DLVLSNGALMPLLAQ-FNEHAKLSMLRNATWTLSNFCRGKPQP----LFEQTRPALPALE 247
+V G + L+ + + A L + + + LP +
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361
Query: 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
+L+H L A L + E G PRLV+LL
Sbjct: 362 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421
Query: 308 GNIVTGDDMQT---------------------QCIINHQALPCLLDLLTQNYKKSIKKEA 346
+ ++ I +P + LL + ++I++ A
Sbjct: 422 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENIQRVA 480
Query: 347 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
+ + A + +AI G PL LL + + AA +
Sbjct: 481 AGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 527
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 3e-28
Identities = 51/286 (17%), Positives = 93/286 (32%), Gaps = 28/286 (9%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL-SRDDFPQL 131
L +V + SDD N+ A L + V Q G + + + D +
Sbjct: 268 LGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 326
Query: 132 QFEAAWALTNIASGTSENTRV---VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188
A AL ++ S E V H +P+ V+LL P+ +A L
Sbjct: 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386
Query: 189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 248
P + GA+ P L Q A R + + +
Sbjct: 387 PANHAPLREQGAI-PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV--------------- 430
Query: 249 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308
+E++ AL L+ +++I + P V+LL P ++ A +
Sbjct: 431 ----RMEEIVEGCTGALHILARDVHNRI-VIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485
Query: 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354
+ + + I A L +LL + + + A + ++
Sbjct: 486 ELAQDKEAA-EAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRMS 529
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 270 bits (692), Expect = 1e-89
Identities = 90/241 (37%), Positives = 135/241 (56%), Gaps = 4/241 (1%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
LP M + SDD QL AT +F ++LS + + I VI +G +P ++ LS + Q+
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPN-EQIL 71
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
EA WAL+NIASG +E + VID GA+P V+LLSSP + + ++A+WAL N+A +
Sbjct: 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIH 251
V+ GAL P L Q +L+ A W LSN G Q ALPAL +L+
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 190
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
S ++++L +A WALS ++ G N++ QAV EAG +L +L H + + A + +
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250
Query: 312 T 312
+
Sbjct: 251 S 251
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 5e-67
Identities = 64/159 (40%), Positives = 96/159 (60%), Gaps = 1/159 (0%)
Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
LP + + ++S+D + A S + N++IQAVI+AG P LV+LL P+ +L
Sbjct: 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 361
AL + NI +G + Q Q +I+ ALP L+ LL + + I +EA W +SNI +G QI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131
Query: 362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
QA+I+AG + LV LL + +I +EA WA+SN SGG+
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 1e-50
Identities = 79/243 (32%), Positives = 119/243 (48%), Gaps = 43/243 (17%)
Query: 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSM 216
+P + L+S + A + D + V+ GAL
Sbjct: 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL--------------- 56
Query: 217 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 276
PAL +L+ S ++++L +A WALS ++ G N++I
Sbjct: 57 ---------------------------PALVQLLSSPNEQILQEALWALSNIASGGNEQI 89
Query: 277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336
QAVI+AG P LV+LL P+ +L AL + NI +G + Q Q +I+ ALP L+ LL
Sbjct: 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-S 148
Query: 337 NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396
+ + I +EA W +SNI +G QIQA+I+AG + LV LL + +I +EA WA+SN
Sbjct: 149 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208
Query: 397 SGG 399
SGG
Sbjct: 209 SGG 211
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 253 bits (647), Expect = 3e-77
Identities = 50/333 (15%), Positives = 111/333 (33%), Gaps = 9/333 (2%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
+ A+V + + + T+ LS R + + +SG +P + L +
Sbjct: 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLL-AIFKSGGIPALVNMLGSPV-DSVL 251
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
F A L N+ V G + V LL+ L +A + + +
Sbjct: 252 FHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 311
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS 252
++L++G L+ + +L + L + AL +
Sbjct: 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 371
Query: 253 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312
++ + W L LSD + G+ LV+LL +V+ A + N+
Sbjct: 372 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 428
Query: 313 GDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVN---QIQAIIEAG 368
+ + + L+ + + ++ I + A + ++T+ + + A+
Sbjct: 429 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHY 488
Query: 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSS 401
+ +V LL +A + + +
Sbjct: 489 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 521
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 227 bits (580), Expect = 1e-67
Identities = 54/341 (15%), Positives = 109/341 (31%), Gaps = 8/341 (2%)
Query: 62 SAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIE 121
+ + + D + Q T R R+ E + G+ +
Sbjct: 58 DNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQR-----VRAAMFPETLDEGMQIPSTQ 112
Query: 122 FL-SRDDFPQLQFEAAWALTNIASG-TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
F + Q E + L + + + A+P +LL+ V +A
Sbjct: 113 FDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAV 172
Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
+ ++ ++ S + ++ + R + TL N + L
Sbjct: 173 MVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK 232
Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
+PAL ++ S D VL A L L AV AG ++V LL +
Sbjct: 233 SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 292
Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
L + + G+ I+ L++++ + Y + + + +
Sbjct: 293 LAITTDCLQILAYGNQESKLIILASGGPQALVNIM-RTYTYEKLLWTTSRVLKVLSVCSS 351
Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
AI+EAG + L L + + + W + N + +
Sbjct: 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 392
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 3e-62
Identities = 58/333 (17%), Positives = 118/333 (35%), Gaps = 13/333 (3%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
+PA+V + S ++ A T L + + V +G + + + L++ + +
Sbjct: 236 IPALVNMLGSPVDSVLFHAITTLHNL-LLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFL 293
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD-VREQAVWALGNVAGDSPKC 191
L +A G E+ +++ G V ++ + T + + L ++
Sbjct: 294 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSN 352
Query: 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 251
+ ++ G + L +++N WTL N + L L +L+
Sbjct: 353 KPAIVEAGGM-QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLG 409
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGN 309
S+D V+T A LS L+ V + G LV + + PA+ + +
Sbjct: 410 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 469
Query: 310 IVTGDD---MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366
+ + M + H LP ++ LL +A + A + E
Sbjct: 470 LTSRHQDAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLRE 528
Query: 367 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399
G I LV LL+ A + ++ + +
Sbjct: 529 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 561
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 203 bits (517), Expect = 1e-58
Identities = 62/355 (17%), Positives = 116/355 (32%), Gaps = 33/355 (9%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
A+V + + L T++ K+LS+ S ++++G + L D +L
Sbjct: 320 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLV 377
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
W L N++ T+ G + V+LL S +V A L N+ ++ K +
Sbjct: 378 QNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434
Query: 193 DLVLSNGALMPLLAQ-FNEHAKLSMLRNATWTLSNFCRG----KPQPLFEQTRPALPALE 247
+V G + L+ + + A L + + + LP +
Sbjct: 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV 494
Query: 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
+L+H L A L + E G PRLV+LL
Sbjct: 495 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 554
Query: 308 GNIVTGDDMQT---------------------QCIINHQALPCLLDLLTQNYKKSIKKEA 346
+ ++ I +P + LL + ++I++ A
Sbjct: 555 TQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLL-YSPIENIQRVA 613
Query: 347 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSS 401
+ + A + +AI G PL LL + + AA + +
Sbjct: 614 AGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQ 667
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 146 bits (369), Expect = 2e-38
Identities = 46/355 (12%), Positives = 109/355 (30%), Gaps = 37/355 (10%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
+ A+ + + + + R L + G++ ++ L DD +
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAAT----KQEGMEGLLGTLVQLLGSDD-INVV 416
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVA---GD 187
AA L+N+ +N +V G + VR + + +D+ E A+ AL ++ D
Sbjct: 417 TCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQD 476
Query: 188 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE 247
+ ++ V + L ++ + + +++ + N + + A+P L
Sbjct: 477 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLV 536
Query: 248 RLIHSNDDEVLTDACWALSYLSDG---------------------TNDKIQAVIEAGVCP 286
+L+ + + + P
Sbjct: 537 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIP 596
Query: 287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 346
V+LL P ++ A + + + + I A L +LL + + + A
Sbjct: 597 LFVQLLYSPIENIQRVAAGVLCELAQDKE-AAEAIEAEGATAPLTELL-HSRNEGVATYA 654
Query: 347 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSS 401
+ ++ + + L + L E E + + G
Sbjct: 655 AAVLFRMSEDKPQDYK----KRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEP 705
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 1e-72
Identities = 67/159 (42%), Positives = 99/159 (62%), Gaps = 1/159 (0%)
Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
LP + + ++S D + L A LS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 361
AL + NI +G + Q Q +I+ ALP L+ LL + + I +EA W +SNI +G QI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131
Query: 362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
QA+I+AG + LV LL + +I +EA WA+SN SGG+
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 178 bits (455), Expect = 1e-54
Identities = 78/289 (26%), Positives = 121/289 (41%), Gaps = 86/289 (29%)
Query: 109 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS 168
+P+ ++ L+ D Q A L+ IASG +E + VID GA+P V+LLSS
Sbjct: 7 HHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65
Query: 169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228
P + + ++A+WAL N+A + V+ GAL L+
Sbjct: 66 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV----------------------- 102
Query: 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 288
+L+ S ++++L +A WALS ++ G N++IQAVI+AG P L
Sbjct: 103 -------------------QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 143
Query: 289 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW 348
V+LL P+ + +EA W
Sbjct: 144 VQLLSSPNEQI-------------------------------------------LQEALW 160
Query: 349 TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397
+SNI +G Q QA+ EAG + L L + +I+KEA A+ S
Sbjct: 161 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 4e-49
Identities = 72/258 (27%), Positives = 118/258 (45%), Gaps = 52/258 (20%)
Query: 55 AHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSG 114
+H + + L P MV + S D+ A + ++ + I VI +G
Sbjct: 4 SHHHHHHGSEL--------PQMVQQLNSPDQQELQSALRKLS-QIASGGNEQIQAVIDAG 54
Query: 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 174
+P ++ LS + Q+ EA WAL+NIASG +E + VID GA+P V+LLSSP + +
Sbjct: 55 ALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 175 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 234
++A+WAL N+A + V+ G
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAG----------------------------------- 138
Query: 235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294
ALPAL +L+ S ++++L +A WALS ++ G N++ QAV EAG +L +L H
Sbjct: 139 -------ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 191
Query: 295 PSPSVLIPALRTVGNIVT 312
+ + A + + +
Sbjct: 192 ENEKIQKEAQEALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
+ +V L + + + + A +S SGG+
Sbjct: 6 HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGN 44
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 221 bits (564), Expect = 4e-69
Identities = 59/333 (17%), Positives = 109/333 (32%), Gaps = 34/333 (10%)
Query: 88 QLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147
Q+ A + P +++ A L + S
Sbjct: 15 QIRAYCETCWEWQEAHEPGMDQDKN----------PMPAPVEHQICPAVCVLMKL-SFDE 63
Query: 148 ENTRVVIDHGAVPIFVRLLSSPTD-----------DVREQAVWALGNVAGDSPKCRDLVL 196
E+ + + G + LL + +R A AL N+ + +
Sbjct: 64 EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123
Query: 197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR--PALPALERL-IHSN 253
S M L + + + L N + R ++ AL +
Sbjct: 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 183
Query: 254 DDEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP-------ALR 305
+ L AL LS T +K G LV L + S + + LR
Sbjct: 184 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 243
Query: 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 365
V +++ ++ Q + + L LL L +++ +I AC T+ N++A N +A+
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 302
Query: 366 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398
+ G + L NL+ + I +A A+ N +
Sbjct: 303 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 187 bits (477), Expect = 3e-56
Identities = 60/360 (16%), Positives = 118/360 (32%), Gaps = 33/360 (9%)
Query: 38 KNKREESLLKKRREGLQAHQPLTNSA-ALDNKKLESLPAMVAGVWSDDRNIQLDATTQFR 96
+ +L L+ + + + + + + A
Sbjct: 2 GHHHHHHMLHL----LEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLM 57
Query: 97 KLLSIERSPPINEVIQSGVVPRFIEFLSRD----------DFPQLQFEAAWALTNIASGT 146
KL E + + G + E L D L+ A ALTN+ G
Sbjct: 58 KLSFDEEHRH--AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD 115
Query: 147 SENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVA-GDSPKCRDLVLSNGALMPL 204
N + G + V L S ++D+++ L N++ + + G++ L
Sbjct: 116 VANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175
Query: 205 LAQFNEHAKLSMLRNAT---WTLSNFCRGKPQPLFEQTRPALPALERLI----HSNDDEV 257
+ E K S L++ W LS C + AL L + +N +
Sbjct: 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAV-DGALAFLVGTLTYRSQTNTLAI 234
Query: 258 LTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 314
+ L +S D Q + E L++ L+ S +++ A T+ N+ +
Sbjct: 235 IESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN 294
Query: 315 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN--QIQAIIEAGIIGP 372
+ + + A+ L +L+ + K I + + N+ A + I+ G P
Sbjct: 295 PKDQEALWDMGAVSMLKNLI-HSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 2e-16
Identities = 18/131 (13%), Positives = 47/131 (35%), Gaps = 12/131 (9%)
Query: 281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL------ 334
+ + P + PA+ + + ++ + L + +LL
Sbjct: 30 HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE-HRHAMNELGGLQAIAELLQVDCEM 88
Query: 335 ----TQNYKKSIKKEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAA 389
+Y ++++ A ++N+T G+V + G + LV L + ++++ A
Sbjct: 89 YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 148
Query: 390 WAISNATSGGS 400
+ N +
Sbjct: 149 SVLRNLSWRAD 159
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 11/100 (11%), Positives = 32/100 (32%), Gaps = 13/100 (13%)
Query: 313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP 372
+ + + + + + A + ++ ++ A+ E G +
Sbjct: 20 CETCWEWQEAHEPGMDQDKNPM-PAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQA 77
Query: 373 LVNLL-----------LNAEFEIKKEAAWAISNATSGGSS 401
+ LL + +++ A A++N T G +
Sbjct: 78 IAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA 117
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 199 bits (506), Expect = 2e-59
Identities = 71/401 (17%), Positives = 132/401 (32%), Gaps = 79/401 (19%)
Query: 18 VAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMV 77
+ ++ R RRE ++ + + R E +AH+P +
Sbjct: 110 IHSQPDDKRGRREIRVLHLLEQIRAYCETC--WEWQEAHEP-------------GMDQDK 154
Query: 78 AGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD----------D 127
+ + + A KL E + + G + E L D
Sbjct: 155 NPMPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAELLQVDCEMYGLTNDHY 212
Query: 128 FPQLQFEAAWALTNIASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 186
L+ A ALTN+ G N + G + V L S ++D+++ L N++
Sbjct: 213 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW 272
Query: 187 D-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 245
+ + G++ L+
Sbjct: 273 RADVNSKKTLREVGSVKALM---------------------------------------- 292
Query: 246 LERLIHSNDDEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP-- 302
E + + L AL LS T +K G LV L + S + +
Sbjct: 293 -ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAII 351
Query: 303 -----ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
LR V +++ ++ Q + + L LL L +++ +I AC T+ N++A N
Sbjct: 352 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARN 410
Query: 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398
+A+ + G + L NL+ + I +A A+ N +
Sbjct: 411 PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 6e-34
Identities = 61/400 (15%), Positives = 118/400 (29%), Gaps = 103/400 (25%)
Query: 52 GLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI 111
GL + K+E + ++++ + + D + D + R LL++ S +
Sbjct: 13 GLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHD---KDDMS---RTLLAMSSSQDSCISM 66
Query: 112 -QSGVVPRFIEFLSRDDFPQ-----------LQFEAAWALTNIASGTSENTRVVIDHGAV 159
QSG +P I+ L +D + A+ AL NI ++ R + +
Sbjct: 67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVL 126
Query: 160 PI------------------------FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 195
+ + +P + AV L ++ D + R +
Sbjct: 127 HLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAM 185
Query: 196 LSNGALMPLL----------AQFNEHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPAL 243
G L + N+H +++ R A L+N G + + +
Sbjct: 186 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245
Query: 244 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPSPSVLIP 302
AL + S +++ L LS + + + E G L+E
Sbjct: 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK------ 299
Query: 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQI 361
K+S K + N++A N+
Sbjct: 300 ------------------------------------KESTLKSVLSALWNLSAHCTENKA 323
Query: 362 QAIIEAGIIGPLVNLLLNAE----FEIKKEAAWAISNATS 397
G + LV L I + + N +S
Sbjct: 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 363
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 47/215 (21%), Positives = 77/215 (35%), Gaps = 12/215 (5%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
+ A+VA + S+ ++Q + R L + + G V +E
Sbjct: 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304
Query: 133 FEAAWALTNIASGTSEN-TRVVIDHGAVPIFVRLLSSP----TDDVREQAVWALGNVAG- 186
AL N+++ +EN + GA+ V L+ T + E L NV+
Sbjct: 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 364
Query: 187 --DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPA 242
+ R ++ N L LL L+++ NA TL N P Q A
Sbjct: 365 IATNEDHRQILRENNCLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMG-A 422
Query: 243 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277
+ L+ LIHS + + AL L K +
Sbjct: 423 VSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 186 bits (473), Expect = 1e-54
Identities = 49/317 (15%), Positives = 98/317 (30%), Gaps = 32/317 (10%)
Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
+P+ +++LS D + Q A+ + + + V G + V LL SP +V++
Sbjct: 4 IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62
Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
A AL N+ S + + ++ + + T L N
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122
Query: 236 FEQTRPALPALERLI----------------HSNDDEVLTDACWALSYLSDGTNDKIQAV 279
E ALP L + D EV +A L LS +
Sbjct: 123 -ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181
Query: 280 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK 339
+G+ L+ +++ + + ++ + L+ +N
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241
Query: 340 KSIKKEACWTISNITAGNVNQIQAI-------------IEAGIIGPLVNLLLNAEFEIKK 386
C++ + N N + + I +NL+ ++ +
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301
Query: 387 EAA-WAISNATSGGSSW 402
EA A+ N T+
Sbjct: 302 EACAGALQNLTASKGLM 318
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 6e-28
Identities = 45/308 (14%), Positives = 92/308 (29%), Gaps = 28/308 (9%)
Query: 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 172
SG P++ F A L N++S + + G + + + +
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200
Query: 173 VR------EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--------KLSMLR 218
R E + L N++ A + + M
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260
Query: 219 NATWTLSNFCRG-KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK-- 275
N L K + L + S D L AL L+
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320
Query: 276 ---IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 332
++ P++ LL+ + V+ + N+ ++ +Q P +
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378
Query: 333 LLTQNYKKSIKKE-----ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE-IKK 386
LLT + + E AC+T+ N+ A + + ++ ++NL ++ +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438
Query: 387 EAAWAISN 394
A +S+
Sbjct: 439 AARLLLSD 446
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 87.6 bits (216), Expect = 5e-19
Identities = 27/176 (15%), Positives = 63/176 (35%), Gaps = 18/176 (10%)
Query: 241 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL 300
+P + + S D++ + + + Q V + G +LV+LLR P+ +V
Sbjct: 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61
Query: 301 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 360
A + N+V + + LL + I+K+ + N+++ +
Sbjct: 62 QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL- 120
Query: 361 IQAIIEAGIIGPLVNLLL----------------NAEFEIKKEAAWAISNATSGGS 400
+ + A + L + ++ + E+ A + N +S +
Sbjct: 121 -KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADA 175
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 77.6 bits (190), Expect = 9e-16
Identities = 30/219 (13%), Positives = 68/219 (31%), Gaps = 23/219 (10%)
Query: 199 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP---QPLFEQTRPALPALERLIHSNDD 255
G +P Q+ + + + C Q +++ + L L+ S +
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL--GGICKLVDLLRSPNQ 58
Query: 256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGD 314
V A AL L + V LLR + + + N+ + D
Sbjct: 59 NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118
Query: 315 DMQTQCIINHQALPCLLDLL---------------TQNYKKSIKKEACWTISNITAGNVN 359
+++ + + ALP L D + + + A + N+++ +
Sbjct: 119 ELKEE--LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG 176
Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398
+ +G+I L+ + N + + +
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVL 215
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 174 bits (441), Expect = 4e-49
Identities = 58/352 (16%), Positives = 113/352 (32%), Gaps = 57/352 (16%)
Query: 98 LLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 157
L S+ + P + +P I L ++ AA L ++ + V
Sbjct: 32 LDSLRKGGPPPPNWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLK 90
Query: 158 AVPIFVRLLSSPTDDVREQAVWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLSM 216
+P+ V LL P +V A AL N++ G + + + + L+ + + +
Sbjct: 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150
Query: 217 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLI------------------HSNDDEVL 258
T TL N E AL AL + H + VL
Sbjct: 151 TEVITGTLWN-LSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209
Query: 259 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH----------------------- 294
T+ L +S ++ + + E G+ L+ +++
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269
Query: 295 --------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 346
+ A N T + + + + + LL ++ +I + +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329
Query: 347 CWTISNITAGNVNQI----QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
I N+ AG A+ + + + +LL N + K A+ A+ N
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRN 381
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 1e-23
Identities = 55/386 (14%), Positives = 111/386 (28%), Gaps = 68/386 (17%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
+P +V + + + L A + + + VP + L + L
Sbjct: 92 IPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLT 151
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP------------------TDDVR 174
L N++S ++ ++ I A+ + P + V
Sbjct: 152 EVITGTLWNLSS--HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209
Query: 175 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS------MLRNATWTLSNFC 228
L NV+ + + R + L+ L + ++ N L N
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269
Query: 229 R---------------------------GKPQPLFEQTRPALPALERLIHSNDDEVLTDA 261
+ L Q + L S +L +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329
Query: 262 CWALSYLSDGT----NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317
A+ L G A+ + + +LL + V+ A + N+ +
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA--R 387
Query: 318 TQCIINHQALPCLLDLLT-------QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 370
+ +I A+P L+ L N+ + TI+ + A N+ + + E I
Sbjct: 388 NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGI 447
Query: 371 GPLVNLLLNAEFEIK--KEAAWAISN 394
LV + + K + AA +
Sbjct: 448 EKLVLINKSGNRSEKEVRAAALVLQT 473
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 92.3 bits (228), Expect = 2e-20
Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 4/166 (2%)
Query: 214 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273
R + +L + +G P P + +P LP + ++ D V ++A L +L +
Sbjct: 22 AQHERGSLASLDSLRKGGPPPPNWR-QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND 80
Query: 274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC-IINHQALPCLLD 332
V + P LV LL HP V + A + NI G D + I N +P L+
Sbjct: 81 KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVR 140
Query: 333 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 378
LL + + + T+ N+++ + +++ + A + L + ++
Sbjct: 141 LLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHA--LHALTDEVI 184
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 80.4 bits (197), Expect = 1e-16
Identities = 48/327 (14%), Positives = 105/327 (32%), Gaps = 56/327 (17%)
Query: 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188
P Q E + + +P + +L D V+ A L ++ +
Sbjct: 20 PLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN 79
Query: 189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP--LFEQTRPALPAL 246
K + V + L+ + K + A L N G+ Q + + +PAL
Sbjct: 80 DKVKTDVRKLKGIPVLVGLLDHPKK-EVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138
Query: 247 ERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP---------- 295
RL+ + D ++ L LS + K++ V A L + + P
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHAL--HALTDEVIIPHSGWEREPNE 196
Query: 296 --------SPSVLIPALRTVGNIVTGDDMQTQCIINHQAL-PCLLDLL-----TQNYKKS 341
SVL + N+ + + + L L+ ++ ++
Sbjct: 197 DCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSK 256
Query: 342 IKKEACWTISNITAGNVNQI-------------------------QAIIEAGIIGPLVNL 376
+ + + N++ +I + + + ++ ++L
Sbjct: 257 LVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISL 316
Query: 377 LLNAE-FEIKKEAAWAISNATSGGSSW 402
L ++ I + +A AI N +G ++
Sbjct: 317 LKESKTPAILEASAGAIQNLCAGRWTY 343
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 52.3 bits (124), Expect = 1e-07
Identities = 22/164 (13%), Positives = 51/164 (31%), Gaps = 15/164 (9%)
Query: 81 WSDDRNIQLDATTQFRKLLSIERSPPIN---EVIQSGVVPRFIEFLSRDDFPQLQFEAAW 137
S I + + L + + + Q + + L+ + ++ A+
Sbjct: 319 ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH-ERVVKAASG 377
Query: 138 ALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT--------DDVREQAVWALGNVAGDSP 189
AL N+A + +I A+P V+ L +D + + V ++
Sbjct: 378 ALRNLAVD--ARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL 435
Query: 190 KCRDLVLSNGALMPLLA-QFNEHAKLSMLRNATWTLSNFCRGKP 232
+ + + L+ + + +R A L K
Sbjct: 436 EAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 4e-49
Identities = 41/240 (17%), Positives = 82/240 (34%), Gaps = 7/240 (2%)
Query: 111 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH-GAVPIFVRLLSSP 169
+ S +P + Q + A L ++ +N G + R L +
Sbjct: 36 VLSQPMPPTAGEAEQAADQQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAG 94
Query: 170 TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229
+R +A +G + + ++ VL GAL LL + A ++ A + +S R
Sbjct: 95 AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 154
Query: 230 GKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 287
+ F + L R + ++ + + L L G + + G+ +
Sbjct: 155 EQEAGLLQFLRL-DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213
Query: 288 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC 347
LV L+R L + ++VT + + L +LL + + E
Sbjct: 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRHRCQLLQQHEEY 271
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 99.3 bits (247), Expect = 7e-24
Identities = 24/163 (14%), Positives = 60/163 (36%)
Query: 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 298
++P P + D + A L+ L + ++ +G+ + L +
Sbjct: 38 SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97
Query: 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358
+ A + +G + ++ AL LL LL ++ +++ +A + IS +
Sbjct: 98 LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157
Query: 359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSS 401
+ + L+ + ++K ++A+ + N G
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPE 200
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 98.2 bits (244), Expect = 2e-23
Identities = 22/154 (14%), Positives = 54/154 (35%), Gaps = 2/154 (1%)
Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVL 300
+ R + + + A + S + V+ G +L+ LL +V
Sbjct: 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 142
Query: 301 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 360
+ AL + +V + + L+ + Q + +K ++ + + N+ G+
Sbjct: 143 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQKLKVKSAFLLQNLLVGHPEH 201
Query: 361 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
+ G++ LV L+ + A+ +
Sbjct: 202 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCS 235
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 89.7 bits (222), Expect = 2e-20
Identities = 24/181 (13%), Positives = 58/181 (32%), Gaps = 2/181 (1%)
Query: 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 141
+ ++ A + +V+ G + + + L RD ++ +A +A++
Sbjct: 93 AGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISC 151
Query: 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 201
+ + + +R + ++ ++ + L N+ P+ + + S G +
Sbjct: 152 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 211
Query: 202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDA 261
L + L + PQ + E P L E L H +
Sbjct: 212 -QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEE 270
Query: 262 C 262
Sbjct: 271 Y 271
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 152 bits (384), Expect = 2e-40
Identities = 55/393 (13%), Positives = 119/393 (30%), Gaps = 42/393 (10%)
Query: 46 LKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSP 105
L K + KL D++I+ A L+++
Sbjct: 354 LCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA-YLTLDAEC 412
Query: 106 PINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT------------------- 146
+ + ++ + + N+ +
Sbjct: 413 KEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQH 471
Query: 147 -------------SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193
++ V+ + G L + + + +E L V G + R
Sbjct: 472 IPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRG 530
Query: 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRP--ALPALERLI 250
V+ G + LL E + R+AT L+ P+ F R + L L+
Sbjct: 531 KVVQEGGVKALLRMALEGTEKGK-RHATQALARIGITINPEVSFSGQRSLDVIRPLLNLL 589
Query: 251 HSNDDEVLT-DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309
+ + ++ AL+ L+ Q +I+ ++ L + A + + N
Sbjct: 590 QQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649
Query: 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AG 368
+V +D+ N+ + L L ++ + ++ IT+ +V + I+ A
Sbjct: 650 LVMSEDVIKMFEGNNDRVKFLALLC-EDEDEETATACAGALAIITSVSVKCCEKILAIAS 708
Query: 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSS 401
+ L L+ N ++ I N + G
Sbjct: 709 WLDILHTLIANPSPAVQHRGIVIILNMINAGEE 741
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 3e-36
Identities = 44/350 (12%), Positives = 101/350 (28%), Gaps = 47/350 (13%)
Query: 86 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145
+ A+ ++ + +I+ + + A+T + +G
Sbjct: 219 SSSTIASVCLARIYENMYYDEAKARFTD-QIDEYIKDKLLAPDMESKVRVTVAITALLNG 277
Query: 146 TSE-NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL 204
+ +VV G + + + + ++ + + A L + + G + +
Sbjct: 278 PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKK-DKAKALCEQG--VDI 334
Query: 205 LAQFNEHAKLSMLRNATWTLSNFC-----RGKPQPLFEQTRPALPALER---LIHSNDDE 256
L + + A L +P + L R + D +
Sbjct: 335 LKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKD 394
Query: 257 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316
+ A L+YL+ K + + + L++L R + S L + T N+ +
Sbjct: 395 IRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454
Query: 317 QT--------------------------------QCIINHQALPCLLDLLTQNYKKSIKK 344
Q + N L L S +
Sbjct: 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNS--Q 512
Query: 345 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
E + N G +++ G + L+ + L + K+ A A++
Sbjct: 513 ELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALAR 562
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 4e-33
Identities = 41/291 (14%), Positives = 79/291 (27%), Gaps = 5/291 (1%)
Query: 107 INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL 166
I + G+ L++ + Q A L + G E V+ G V +R+
Sbjct: 488 ITVLANEGITTALCA-LAKTESHNSQELIARVLNAV-CGLKELRGKVVQEGGVKALLRMA 545
Query: 167 SSPTDDVREQAVWALGN--VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 224
T+ + A AL + + S + PLL + + L
Sbjct: 546 LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMAL 605
Query: 225 SNFCRGKPQPLFEQTR-PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 283
+N + + +E + + + A L L +
Sbjct: 606 TNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNND 665
Query: 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 343
L L + I + + I+ + +L L N +++
Sbjct: 666 RVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQ 725
Query: 344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
I N+ + + E I+ L L + K A
Sbjct: 726 HRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQC 776
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 115 bits (288), Expect = 6e-28
Identities = 35/231 (15%), Positives = 68/231 (29%), Gaps = 6/231 (2%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLL-SIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
+ A++ + AT ++ +I + V+ + L +D
Sbjct: 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALE 597
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
FE+ ALTN+AS + +I V L + A L N+
Sbjct: 598 NFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI 657
Query: 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP---QPLFEQTRPALPALER 248
+ +N + LA E L+ + + L L
Sbjct: 658 KMFEGNNDRV-KFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIAS-WLDILHT 715
Query: 249 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
LI + V + + + + + + E + L L + P +
Sbjct: 716 LIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTR 766
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 81.4 bits (200), Expect = 1e-16
Identities = 30/210 (14%), Positives = 61/210 (29%), Gaps = 3/210 (1%)
Query: 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 141
++ L S+ S +I+ V + +L +D L AA L N
Sbjct: 592 DCTALENFESLMALTNLASMNESV-RQRIIKEQGVSKIEYYLM-EDHLYLTRAAAQCLCN 649
Query: 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 201
+ ++ V L ++ AL + S KC + +L+ +
Sbjct: 650 LVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW 709
Query: 202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP-ALPALERLIHSNDDEVLTD 260
+ +L + ++ + N + + + L L DD
Sbjct: 710 LDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKA 769
Query: 261 ACWALSYLSDGTNDKIQAVIEAGVCPRLVE 290
A L+ +I + P +
Sbjct: 770 REVATQCLAAAERYRIIERSDNAEIPDVFA 799
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 3e-37
Identities = 38/214 (17%), Positives = 63/214 (29%), Gaps = 20/214 (9%)
Query: 116 VPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 174
+ R + L D P AA + + SE + V + ++LL +DV+
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 175 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 234
AL N+ + + V + LL + L + T L N
Sbjct: 70 RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129
Query: 235 LFEQTRPALPALERLI----------------HSNDDEVLTDACWALSYLSDGTNDKIQA 278
AL L I D ++ + L +S D +A
Sbjct: 130 N-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188
Query: 279 VIEA-GVCPRLVELLRHPSPSVLIPALRTVGNIV 311
+ G+ LV +R + N V
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDD-KATENCV 221
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 6e-20
Identities = 27/177 (15%), Positives = 64/177 (36%), Gaps = 20/177 (11%)
Query: 241 PALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 298
L ++ ++ ++ A + + ++ + V + +L++LL+ +
Sbjct: 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNED 67
Query: 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358
V + N+V D+ + +P LL +L Q KK+ + N+++ +
Sbjct: 68 VQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK 127
Query: 359 NQIQAIIEAGIIGPLVNLLL----------------NAEFEIKKEAAWAISNATSGG 399
+ I EA + L ++ +F+I + N +S G
Sbjct: 128 LKNLMITEA--LLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG 182
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 89.4 bits (221), Expect = 1e-20
Identities = 44/262 (16%), Positives = 89/262 (33%), Gaps = 27/262 (10%)
Query: 50 REGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINE 109
RE L + L + L ++ + D + +A + + E
Sbjct: 11 REALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKT------RE 64
Query: 110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP 169
+ ++ + L + + L E A A +A E + +I P+
Sbjct: 65 DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIG 119
Query: 170 TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229
+ + +AL +A +P ++ + M +L+ N KL+ L +
Sbjct: 120 DEKTKINVSYALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL----NFIEAMGE 173
Query: 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 289
+ + P LP + L+H D+ V A AL +L+ + + VI + +
Sbjct: 174 NSFKYV----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRL 223
Query: 290 ELLRHPSPSVLIPALRTVGNIV 311
E L S V + ++
Sbjct: 224 EELNDTSSLVNKTVKEGISRLL 245
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 71.7 bits (175), Expect = 2e-14
Identities = 32/201 (15%), Positives = 70/201 (34%), Gaps = 20/201 (9%)
Query: 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 174
V+ + IE L DD + A + IA + ++ +F L S +
Sbjct: 33 VLKKLIELLD-DDLWTVVKNAISIIMVIAKTREDLYEPMLK----KLFSLLKKSEAIPLT 87
Query: 175 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 234
++ A G +A + P+ +++P+L N ++ L + P
Sbjct: 88 QEIAKAFGQMAKEKPELVK------SMIPVLFANYRIGDEKTKINVSYALEEIAKANP-- 139
Query: 235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294
+ ++ S + E A + + + + + + PR++ LL
Sbjct: 140 --MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL-----PRIINLLHD 192
Query: 295 PSPSVLIPALRTVGNIVTGDD 315
V A+ + ++ T +D
Sbjct: 193 GDEIVRASAVEALVHLATLND 213
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 4e-12
Identities = 34/253 (13%), Positives = 69/253 (27%), Gaps = 45/253 (17%)
Query: 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 174
L D + +A L AV + + S R
Sbjct: 24 NDDELFRLL-DDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRR 71
Query: 175 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 234
+ + LG + KC D V + L + A + + C+ P
Sbjct: 72 DIGAFILGQI-KICKKCEDNVFN-----ILNNMALNDKSACVRATAIESTAQRCKKNPIY 125
Query: 235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294
+ + + V +A+S ++D P L+ LL+
Sbjct: 126 SPK----IVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKD 170
Query: 295 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354
P+ V A + + C +++L + ++ EA +S
Sbjct: 171 PNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKN-EEVRIEAIIGLSYR- 219
Query: 355 AGNVNQIQAIIEA 367
+ + + +
Sbjct: 220 -KDKRVLSVLCDE 231
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 34/173 (19%)
Query: 98 LLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 157
+ S + N + +V + D ++ A+A++ I D
Sbjct: 112 IESTAQRCKKNPIYSPKIVEQSQITA-FDKSTNVRRATAFAISVIN-----------DKA 159
Query: 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 217
+P+ + LL P DVR A +A+ D+ RD + +L NE +
Sbjct: 160 TIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRD------CFVEMLQDKNEEVR---- 209
Query: 218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270
A LS + + L L + + V D A L D
Sbjct: 210 IEAIIGLSYR----------KDKRVLSVLCDEL--KKNTVYDDIIEAAGELGD 250
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 5e-04
Identities = 24/266 (9%), Positives = 54/266 (20%), Gaps = 84/266 (31%)
Query: 134 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193
+A+ RLL R + L
Sbjct: 9 KASKEYGLYNQCKKL---------NDDELFRLLDDHNSLKRISSARVLQLR--------- 50
Query: 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN 253
+ A+
Sbjct: 51 --------------------------------------------GGQDAVRLAIEFCSDK 66
Query: 254 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313
+ + L + + + L S V A+ +
Sbjct: 67 NYIRRDIGAFILGQIKIC-----KKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKK 121
Query: 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL 373
+ + + + + ++++ + IS I + I L
Sbjct: 122 NPIYSP-----KIVEQSQITAFDKST-NVRRATAFAISVIN-----------DKATIPLL 164
Query: 374 VNLLLNAEFEIKKEAAWAISNATSGG 399
+NLL + +++ AA+AI+
Sbjct: 165 INLLKDPNGDVRNWAAFAININKYDN 190
|
| >1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.50A {Homo sapiens} Length = 44 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-11
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 12 RRSKYK-VAVDAEEGRRRREDNMVEIRKNKREESLLKKRR 50
R ++K D+ E RRRR + VE+RK K+++ +LK+R
Sbjct: 3 RLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRN 42
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 4e-11
Identities = 45/245 (18%), Positives = 78/245 (31%), Gaps = 57/245 (23%)
Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
V +I+ L D ++ AA+AL I D AV ++ L VR
Sbjct: 21 VEMYIKNLQDDS-YYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 68
Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
A ALG + + A+ PL+ + + ++A L
Sbjct: 69 AAADALGQIGDER-----------AVEPLIKAL-KDEDGWVRQSAAVALGQI-------- 108
Query: 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 295
A+ L + + D V A +AL + D +AV L++ L+
Sbjct: 109 --GDERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----ERAV------EPLIKALKDE 155
Query: 296 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355
V A +G I G + + + L + +K A + +
Sbjct: 156 DGWVRQSAADALGEI--GGE---------RVRAAMEKLA-ETGTGFARKVAVNYLETHKS 203
Query: 356 GNVNQ 360
N +
Sbjct: 204 FNHHH 208
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-09
Identities = 41/238 (17%), Positives = 77/238 (32%), Gaps = 56/238 (23%)
Query: 155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL 214
D V ++++ L + VR A +ALG + + A+ PL+ +
Sbjct: 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDER-----------AVEPLIKAL-KDEDA 64
Query: 215 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274
+ R A L A+ L + + D V A AL + D
Sbjct: 65 WVRRAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD---- 110
Query: 275 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 334
+ +E L++ L+ V I A +G I GD+ +A+ L+ L
Sbjct: 111 --ERAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL 152
Query: 335 TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392
++ +++ A + I + + L +K A +
Sbjct: 153 -KDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYL 198
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 60.5 bits (145), Expect = 6e-10
Identities = 40/324 (12%), Positives = 106/324 (32%), Gaps = 14/324 (4%)
Query: 70 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERS-PPINEVIQSGVVPRFIEFLSRDDF 128
+++L + R+I L S + + + R +++ +
Sbjct: 88 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147
Query: 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188
+Q EA + ++ S V + + L+SP VR++ + ALG++
Sbjct: 148 VSVQLEALDIMADMLS-RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV--- 203
Query: 189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 248
C ++V + + LL++ +++ +S R ++ R + E +P + +
Sbjct: 204 MSCGNIVFVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVK 262
Query: 249 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308
+ +DDE+ A ++ + + ++ L + P
Sbjct: 263 FCNVDDDELREYCIQAFESFVRRCPKEVYPHVST-IINICLKYLTYD------PNYNYDD 315
Query: 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 368
+ M + + +++ A + + +++
Sbjct: 316 EDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV-VSTRHEMLPEFYKT 374
Query: 369 IIGPLVNLLLNAEFEIKKEAAWAI 392
+ L++ E +K + A
Sbjct: 375 VSPALISRFKEREENVKADVFHAY 398
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 46.2 bits (108), Expect = 1e-05
Identities = 34/247 (13%), Positives = 80/247 (32%), Gaps = 25/247 (10%)
Query: 108 NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS 167
+ + V + + ++ A +L + + ++ + + + S
Sbjct: 811 PKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKS----VILEAFS 866
Query: 168 SPTDDVREQAVWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226
SP+++V+ A +ALG+++ G+ P+ VL P H+ ++ +A+
Sbjct: 867 SPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSAS----- 921
Query: 227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 286
L L + ++ L K+ + + P
Sbjct: 922 -----VVGLKPYVENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLLP 968
Query: 287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 346
RL L S + V ++ D Q + + L L ++++ A
Sbjct: 969 RLKGYLISGSSYARSSVVTAVKFTIS-DHPQPIDPLLKNCIGDFLKTLEDP-DLNVRRVA 1026
Query: 347 CWTISNI 353
T ++
Sbjct: 1027 LVTFNSA 1033
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 7e-10
Identities = 40/219 (18%), Positives = 70/219 (31%), Gaps = 56/219 (25%)
Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
V +I+ L +DD ++ AA+AL I D AV ++ L VR
Sbjct: 16 VEMYIKNL-QDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 63
Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
A ALG + + + L + + + ++A L
Sbjct: 64 AAADALGQ------------IGDERAVEPLIKALKDEDGWVRQSAAVALGQI-------- 103
Query: 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 295
A+ L + + D V A +AL + D + +E L++ L+
Sbjct: 104 --GDERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ERAVEP-----LIKALKDE 150
Query: 296 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 334
V A +G I G + + + L
Sbjct: 151 DGWVRQSAADALGEI--GGE---------RVRAAMEKLA 178
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-09
Identities = 41/235 (17%), Positives = 78/235 (33%), Gaps = 56/235 (23%)
Query: 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 217
V ++++ L + VR A +ALG + + A+ PL+ + +
Sbjct: 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDER-----------AVEPLIKAL-KDEDAWVR 62
Query: 218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277
R A L A+ L + + D V A AL + D +
Sbjct: 63 RAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD------E 106
Query: 278 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 337
+E L++ L+ V I A +G I GD+ +A+ L+ L ++
Sbjct: 107 RAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL-KD 149
Query: 338 YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392
+++ A + I + + A + L +K A +
Sbjct: 150 EDGWVRQSAADALGEI------GGERVRAA-----MEKLAETGTGFARKVAVNYL 193
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-08
Identities = 32/219 (14%), Positives = 61/219 (27%), Gaps = 53/219 (24%)
Query: 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSG---------------- 114
E + + + D ++ A K+ P+ + ++
Sbjct: 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 73
Query: 115 ---VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD 171
V I+ L +D+ ++ AA AL I D AV ++ L
Sbjct: 74 DERAVEPLIKAL-KDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDW 121
Query: 172 DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231
VR A +ALG + + + L + + + ++A L
Sbjct: 122 FVRIAAAFALGE------------IGDERAVEPLIKALKDEDGWVRQSAADALGEI---- 165
Query: 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270
A+E+L + A L
Sbjct: 166 ------GGERVRAAMEKLAETGTGFARKVAVNYLETHKS 198
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 34/157 (21%)
Query: 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 297
A+ L + + D V A AL + D + +E L++ L+
Sbjct: 42 GDERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEP-----LIKALKDEDG 90
Query: 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
V A +G I GD+ +A+ L+ L ++ A + + I
Sbjct: 91 WVRQSAAVALGQI--GDE---------RAVEPLIKALKDED-WFVRIAAAFALGEIGD-- 136
Query: 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
+ PL+ L + + +++ AA A+
Sbjct: 137 ---------ERAVEPLIKALKDEDGWVRQSAADALGE 164
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 2e-09
Identities = 32/282 (11%), Positives = 85/282 (30%), Gaps = 35/282 (12%)
Query: 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA---LM 202
N + ++ + R + + + + ++Q V + N+ + GA ++
Sbjct: 446 LLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIIL 504
Query: 203 PLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRP--ALPALERLIHSNDDEVLT 259
LA + + L+ P +F++ A+P L L+ +
Sbjct: 505 EYLANKQDIGEPIR-ILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDN 563
Query: 260 --------------DACWALSYL---SDGTNDKI--QAVIEAGVCPRLVELLRHPSPSVL 300
+A AL+ L +++ V + L+ + +
Sbjct: 564 PLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQ 623
Query: 301 IPALRTVGNIVTGDDMQTQCIINHQALPC-----LLDLLTQNYKKSIKKEACWTISNITA 355
L + N+++ N + +L L Q ++ +NI
Sbjct: 624 RSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683
Query: 356 GNVNQIQAIIE-AGIIGPLVNLLLN--AEFEIKKEAAWAISN 394
+ ++ +I + + + + E+++
Sbjct: 684 TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFG 725
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 2e-06
Identities = 42/284 (14%), Positives = 94/284 (33%), Gaps = 27/284 (9%)
Query: 107 INEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 165
I+E +++ + +++ L R + +Q +A L S T + IF+
Sbjct: 285 IDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQL--SEIFINA 342
Query: 166 LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR-NATWTL 224
+S E +V AL ++ + ++ SN + +L + K++ +
Sbjct: 343 ISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIM 401
Query: 225 SNFCRGKPQPLFEQTRPALPALERLI-----HSNDDEVLTDACWALSYLSDGTNDKIQAV 279
+N + E D + +
Sbjct: 402 ANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE--------DILLFNEKYI 453
Query: 280 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT--QN 337
+ + L + + SP+ +R + NI + Q + A+ +L+ L Q+
Sbjct: 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQ-LAQQGAVKIILEYLANKQD 512
Query: 338 YKKSIKKEACWTISNITA----GNVNQIQAIIEAGIIGPLVNLL 377
+ I+ C ++ + G + + + + A I L LL
Sbjct: 513 IGEPIRILGCRALTRMLIFTNPGLIFKKYSALNA--IPFLFELL 554
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 2e-09
Identities = 51/290 (17%), Positives = 100/290 (34%), Gaps = 18/290 (6%)
Query: 105 PPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 164
P ++ +++ + F L DD P ++ AA L A + + +P+F
Sbjct: 155 PRVSSAVKAELRQYFRN-LCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSN 210
Query: 165 LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 224
L S D VR AV A N+A + +MP L Q E +
Sbjct: 211 LASDEQDSVRLLAVEACVNIA----QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 266
Query: 225 SNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAG 283
+ + + + +PA + L+ + EV A + + + D + VI +
Sbjct: 267 TELQKAVGPEITKTD--LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ 324
Query: 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 343
+ P + EL+ + V + + + + LL L K
Sbjct: 325 ILPCIKELVSDANQHVKSALASVIMGLS-------PILGKDNTIEHLLPLFLAQLKDECP 377
Query: 344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 393
+ ISN+ N + ++ +V L +A++ ++ +
Sbjct: 378 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 427
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 3e-06
Identities = 27/227 (11%), Positives = 74/227 (32%), Gaps = 17/227 (7%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
LP +A + + ++L+ + + + +++ + +P +E D +++
Sbjct: 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL----LPAIVELAE-DAKWRVR 419
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
+ +A D + + L +RE A L + K
Sbjct: 420 LAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW 476
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS 252
++ ++P + + + ++ Q + + LP + R+
Sbjct: 477 ----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKH--MLPTVLRMAGD 530
Query: 253 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
V + +L + ++ +++ V P L +L + V
Sbjct: 531 PVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQDVDV 574
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 7e-05
Identities = 34/236 (14%), Positives = 69/236 (29%), Gaps = 18/236 (7%)
Query: 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 218
+ + + L + +R ++ L +A + + L+P L +L
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIA----LALGVERTRSELLPFLTDTIYDED-EVLL 66
Query: 219 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 278
L F P + LP LE L + V A +L +S +
Sbjct: 67 ALAEQLGTFTTLVGGPEYVH--CLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD-- 122
Query: 279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY 338
+EA P + L + A + + +L +
Sbjct: 123 -LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL----RQYFRNLC-SDD 176
Query: 339 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
+++ A + +++ II NL + + ++ A A N
Sbjct: 177 TPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVN 229
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 6e-09
Identities = 61/409 (14%), Positives = 106/409 (25%), Gaps = 134/409 (32%)
Query: 2 SLRPN-------ARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKN-KREESLLKKRREGL 53
LR N +TE R+ + E+ R DN V + N R + K R+ L
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQAL 144
Query: 54 QAHQP----------------LTNSAALDNKKLESLPAMVAGVW-------SDD------ 84
+P + L K + + W S +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLEML 202
Query: 85 RNIQLDATTQFRKLLSIERSPPIN-EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIA 143
+ + + + + IQ+ L + L
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQA----ELRRLLKSKPYEN-------CL---- 247
Query: 144 SGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA--- 200
+V+ +V+ W N+ C+ L+ +
Sbjct: 248 --------LVL----------------LNVQNAKAWNAFNL-----SCKILLTTRFKQVT 278
Query: 201 ------------LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 248
L S+L +PQ L + P
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-------RPQDLPREVLTTNPRRLS 331
Query: 249 LI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV---CPRLVELLRH--------PS 296
+I S D + T W DK+ +IE+ + P R P
Sbjct: 332 IIAESIRDGLAT---W--DNWKHVNCDKLTTIIESSLNVLEP---AEYRKMFDRLSVFP- 382
Query: 297 PSVLIPA--LRTV-GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI 342
PS IP L + +++ D M ++N L++ + SI
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMV---VVNKLHKYSLVEKQPKESTISI 428
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 9e-09
Identities = 50/302 (16%), Positives = 103/302 (34%), Gaps = 81/302 (26%)
Query: 65 LDNKKLESLPAMVAGVWS----DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFI 120
D K ++ +P + S D + DA + +L S +V +F+
Sbjct: 33 FDCKDVQDMPK---SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE------MVQKFV 83
Query: 121 EFLSRDDFPQLQFEAAWALTNIAS---GTSENTRVVID-----HGAVPIFVRLLSSPTDD 172
E + R ++ + ++ I + S TR+ I+ + +F +
Sbjct: 84 EEVLRINYK-------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF------AKYN 130
Query: 173 V-REQAVWALGNVA-GDSPKCRDLVLSNGALMP------LLAQ--FNEHAKLSMLRNATW 222
V R Q L P +++++ +G + + + + M W
Sbjct: 131 VSRLQPYLKLRQALLELRPA-KNVLI-DG--VLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 223 -TLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 281
L N C P+ + E L++L++ D + SD + I+ I
Sbjct: 187 LNLKN-CN-SPETVLEM-------LQKLLYQIDPN--------WTSRSDHS-SNIKLRIH 228
Query: 282 AGVCPRLVELLRHPS-PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK 340
+ + L LL+ + L+ ++ ++Q N L C + L T+ K
Sbjct: 229 S-IQAELRRLLKSKPYENCLL--------VL--LNVQNAKAWNAFNLSCKILLTTRF--K 275
Query: 341 SI 342
+
Sbjct: 276 QV 277
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 2e-08
Identities = 34/179 (18%), Positives = 61/179 (34%), Gaps = 29/179 (16%)
Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
I + D L++ A+ + +GT N+ V + +S DDVR
Sbjct: 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK------RLLHVAVSDSNDDVRR 596
Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
AV ALG V + ++ ++ + + L C GK
Sbjct: 597 AAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ- 646
Query: 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294
A+ L+ L D V A ALS + +K + P++ ++ ++
Sbjct: 647 -----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK--------LNPQVADINKN 692
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 4e-08
Identities = 41/304 (13%), Positives = 87/304 (28%), Gaps = 23/304 (7%)
Query: 107 INEVIQSGVVPRFIEFLSR---DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 163
+ V + ++P + L ++ L IA G + + +P +
Sbjct: 348 LANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE-LIPHLI 406
Query: 164 RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT 223
+ LS VR W L A + LL + + K + A
Sbjct: 407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSA 465
Query: 224 LSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEA 282
+ L L L + L A+ L+D + +
Sbjct: 466 FATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ 525
Query: 283 GVCPRLVELLR--HPSPSVLIPALRTVGNIVTG---------DDMQTQCI------INHQ 325
+ P L++ L P L + ++ T + + +C+ +
Sbjct: 526 MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQA 585
Query: 326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385
L + K A +S + G I+ ++ I L+ + +
Sbjct: 586 MLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEV 645
Query: 386 KEAA 389
++++
Sbjct: 646 RQSS 649
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 9e-08
Identities = 52/319 (16%), Positives = 107/319 (33%), Gaps = 44/319 (13%)
Query: 107 INEVIQSGVVPRFIEFLS---RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 163
+ + ++ +EF+ D + + A A +I G + R H A+P +
Sbjct: 358 FAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSIL 417
Query: 164 RLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 222
L++ + V+E W +G +A + G + L +H K++ N +W
Sbjct: 418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCSW 475
Query: 223 TLSNFCRGKPQPLFEQTRPALPA-LERLIHS-----NDDEVLTDACWALSYLSDGTNDKI 276
T+ N + PA ++ LI + N+ A AL+ + + D +
Sbjct: 476 TIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTV 535
Query: 277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCL------ 330
+ + +++ L + N +T +D Q+ + L L
Sbjct: 536 AETSAS-ISTFVMD--------KLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRK 586
Query: 331 ----------------LDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLV 374
LL + I+ + + IS + A + +E L+
Sbjct: 587 SPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET-FSPYLL 645
Query: 375 NLLLNAEFEIKKEAAWAIS 393
L + + A I+
Sbjct: 646 KALNQVDSPVSITAVGFIA 664
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 3e-04
Identities = 44/297 (14%), Positives = 93/297 (31%), Gaps = 23/297 (7%)
Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA---VPIFVRLLSSPTD-DVRE 175
++ + ++ + AL + ++ ++ + I S+ T VR
Sbjct: 140 VDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRL 199
Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
A+ AL + + LM ++ + + + + A L +
Sbjct: 200 AALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFM 259
Query: 236 FEQTRPALPALE-RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294
AL AL + S +D+V + S + + D + + P
Sbjct: 260 KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL 319
Query: 295 PSPSVLIPALR---TVGNIVTGDDMQTQCIINHQAL------------PCLLDLLTQNYK 339
S ++P L T N DD + L +L+ + QN
Sbjct: 320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNIT 379
Query: 340 KS---IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 393
++ A +I G + + ++NL+ + ++K+ AW I
Sbjct: 380 ADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIG 436
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 2e-07
Identities = 47/312 (15%), Positives = 95/312 (30%), Gaps = 32/312 (10%)
Query: 95 FRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 154
L+ + ++ + I + +S D+ +++ + ++ S +E +
Sbjct: 62 MEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEI--FIK 119
Query: 155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAK 213
V + + LL VR V L ++ + + ++L + + L ++
Sbjct: 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR 179
Query: 214 LSMLRNATWTLSNFCRGKP--QPL--FEQTRPALPALERLIH----SNDDEVLTDACWAL 265
+ + L R Q + FE A L +I S+ V+ D L
Sbjct: 180 EVIRNDGVLLLQALTRSNGAIQKIVAFEN---AFERLLDIITEEGNSDGGIVVEDCLILL 236
Query: 266 SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV---------------LIPALRTVGNI 310
L N E R+ + L+ L + N
Sbjct: 237 QNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNP 296
Query: 311 VTGDDMQTQCIINHQALPCLLDL-LTQNYKKSIKKEACWTISNITAGN-VNQIQ-AIIEA 367
+ + L L + + I E T+S + G VNQ A + A
Sbjct: 297 PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA 356
Query: 368 GIIGPLVNLLLN 379
P +++
Sbjct: 357 PSNPPRPAIVVL 368
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 35/150 (23%)
Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
+ + D+ ++ + + AL+ + A + LS+ +R
Sbjct: 14 LVPRGSHM-ADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRG 60
Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
A W +GN + + L + E + A +L
Sbjct: 61 AAAWIIGN------------FQDERAVEPLIKLLEDDSGFVRSGAARSLEQI-------- 100
Query: 236 FEQTRPALPALERLIHSNDDEVLTDACWAL 265
A+E+L + A L
Sbjct: 101 --GGERVRAAMEKLAETGTGFARKVAVNYL 128
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-06
Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 34/142 (23%)
Query: 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 217
+ ++ VR AL + + A PLL + +
Sbjct: 13 GLVPRGSHMADENKWVRRDVSTALSR------------MGDEAFEPLLESL-SNEDWRIR 59
Query: 218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277
A W + NF Q A+ L +L+ + V + A +L + +
Sbjct: 60 GAAAWIIGNF----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------E 103
Query: 278 AVIEAGVCPRLVELLRHPSPSV 299
V A + +L +
Sbjct: 104 RVRAA-----MEKLAETGTGFA 120
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 7e-06
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 111 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT 170
+ +E L ++ +++ AAW + N D AV ++LL +
Sbjct: 39 MGDEAFEPLLESL-SNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDS 86
Query: 171 DDVREQAVWALGNVAGDS 188
VR A +L + G+
Sbjct: 87 GFVRSGAARSLEQIGGER 104
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-05
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 12/68 (17%)
Query: 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 174
V I+ L DD ++ AA +L I +L + T R
Sbjct: 74 AVEPLIKLL-EDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFAR 121
Query: 175 EQAVWALG 182
+ AV L
Sbjct: 122 KVAVNYLE 129
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 1e-04
Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 35/153 (22%)
Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
L + + V D ALS + D +A L+E L + +
Sbjct: 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------EAF------EPLLESLSNEDWRI 58
Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
A +GN D+ +A+ L+ LL ++ ++ A ++ I G
Sbjct: 59 RGAAAWIIGNF--QDE---------RAVEPLIKLL-EDDSGFVRSGAARSLEQI--GG-- 102
Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392
+ + L +K A +
Sbjct: 103 -------ERVRAAMEKLAETGTGFARKVAVNYL 128
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 1e-05
Identities = 45/243 (18%), Positives = 81/243 (33%), Gaps = 17/243 (6%)
Query: 38 KNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRK 97
N ++ L++ Q + A D + L + + DD +L A +
Sbjct: 4 NNPISKTELRELVLSWQILD-AVSLALEDKRALFLILELAG---EDDETTRLRAFVALGE 59
Query: 98 LLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 157
+L S V++ + FI LS+++ ++ +A AL + ++ +
Sbjct: 60 ILKRADSDLRMMVLER-HLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGSKTFLK-- 115
Query: 158 AVPIFVRLLSSPTDDVREQAVWALG--NVAGDSPKCRDLVLSNGALMPLLAQ------FN 209
A V LL SP D +R + + L DS R + L + F
Sbjct: 116 AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFL 175
Query: 210 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTR-PALPALERLIHSNDDEVLTDACWALSYL 268
S + + Q E AL LE+ + E + +S +
Sbjct: 176 NMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRI 235
Query: 269 SDG 271
DG
Sbjct: 236 VDG 238
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 3e-04
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Query: 234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 293
L + + AL + L +D+ A AL + + ++ ++ + L
Sbjct: 26 SLALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALS 85
Query: 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT 335
+ V I ALR +G +V M ++ + +A L+ LL
Sbjct: 86 QENEKVTIKALRALGYLVKDVPMGSKTFL--KAAKTLVSLLE 125
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 1e-05
Identities = 49/337 (14%), Positives = 104/337 (30%), Gaps = 17/337 (5%)
Query: 17 KVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAM 76
+VA+ E D +++ E + + E L ++L
Sbjct: 274 EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ 333
Query: 77 VAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAA 136
DD N A L + + V+ FI+ ++ + + A
Sbjct: 334 DENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLP------FIKEHIKNPDWRYRDAAV 387
Query: 137 WALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL 196
A I G + + A+P + L+ P+ VR+ A W +G + + +
Sbjct: 388 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL---LPEAAI 444
Query: 197 SNGALMPLLAQFNEH--AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND 254
++ L PLL E A+ + N W S+ + + + S+
Sbjct: 445 NDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEA-ADVADDQEEPATYCLSSSF 503
Query: 255 DEVLTDACWALSYLSDGTNDKIQAVIEA-----GVCPRLVELLRHPSPSVLIPALRTVGN 309
+ ++ N+ + E+ + + V++ L+ V
Sbjct: 504 ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQ 563
Query: 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 346
+ + + I + L L +K ++A
Sbjct: 564 MESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA 600
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 402 | |||
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 100.0 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 100.0 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 100.0 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 100.0 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 100.0 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 100.0 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 100.0 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 100.0 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 100.0 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 100.0 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 100.0 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 100.0 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 100.0 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 100.0 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 100.0 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 100.0 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 100.0 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 100.0 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 100.0 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 100.0 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 100.0 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 100.0 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 100.0 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 100.0 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.98 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.98 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.97 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.97 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.97 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.97 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.95 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.94 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.94 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.93 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.92 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.9 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.9 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.88 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.79 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.77 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.76 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.76 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.75 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.75 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.68 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.68 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.65 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.65 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.63 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.63 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.62 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.62 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.59 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.59 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.58 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.58 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.57 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.57 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.56 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.48 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.48 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.4 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.4 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 99.31 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 99.28 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 99.27 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 99.17 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.16 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 99.08 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 99.07 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 99.04 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.98 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.93 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 98.91 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 98.87 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.87 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.86 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 98.85 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 98.81 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.8 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 98.7 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 98.69 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 98.67 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 98.57 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.39 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 98.34 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.33 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 98.25 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 98.15 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 98.12 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.11 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 98.09 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 98.05 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 98.01 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 97.97 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 97.9 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 97.86 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 97.84 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 97.77 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 97.7 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 97.69 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 97.5 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 97.47 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 97.42 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 97.36 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 97.22 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 97.13 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 97.11 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 97.04 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 96.78 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 96.68 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 96.64 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 96.58 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 96.54 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 96.51 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 96.35 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 96.17 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 96.11 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 96.03 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 95.94 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 95.43 | |
| 3c2g_A | 619 | SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev | 95.42 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 95.3 | |
| 3c2g_A | 619 | SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev | 95.27 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 94.98 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 94.97 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 94.61 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 94.59 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 94.52 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 94.32 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 94.14 | |
| 2p8q_B | 40 | Snurportin-1; heat repeat, IBB-domain, importin, k | 94.11 | |
| 2npp_B | 449 | PP2A, B subunit, serine/threonine-protein phosphat | 91.94 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 91.71 | |
| 3qml_C | 315 | Protein SLS1, nucleotide exchange factor SIL1; arm | 91.68 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 91.23 | |
| 3fga_B | 403 | Serine/threonine-protein phosphatase 2A 56 kDa RE | 90.04 | |
| 3fga_B | 403 | Serine/threonine-protein phosphatase 2A 56 kDa RE | 89.1 | |
| 2npp_B | 449 | PP2A, B subunit, serine/threonine-protein phosphat | 86.73 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 85.01 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 84.77 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 84.27 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 83.5 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 83.02 | |
| 3zyq_A | 226 | Hepatocyte growth factor-regulated tyrosine kinas | 80.7 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 80.68 |
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-62 Score=477.12 Aligned_cols=399 Identities=48% Similarity=0.775 Sum_probs=322.2
Q ss_pred CCCCCCC-ccHHHhhhccC-CCCchHHhhhhHHHHHHHHHHhhhHHHHhhhhccccCCCC-Ccchh--hhhhhhhccHHH
Q 015687 1 MSLRPNA-RTEVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQP-LTNSA--ALDNKKLESLPA 75 (402)
Q Consensus 1 ~~~~~~~-~~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~kr~~~~~~~~~-~~~~~--~~~~~~~~~i~~ 75 (402)
|++++|. .+++|+++||+ |++++|+||||++++++|||+||||++.|||++....++. ++... .........++.
T Consensus 1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (529)
T 3tpo_A 1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED 80 (529)
T ss_dssp -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence 7776655 67899999998 9999999999999999999999999999999875432222 22111 111111246899
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHh
Q 015687 76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID 155 (402)
Q Consensus 76 l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 155 (402)
+++.++|+|++.++.|+..++++++.+++++++.+++.|++|.|+++|..++++.++..|+|+|+||+.++++++..+++
T Consensus 81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~ 160 (529)
T 3tpo_A 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD 160 (529)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999889999999999999999999987666899999999999999999999999999
Q ss_pred CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccch----hhHHHHHHHHHHHHhhhCC
Q 015687 156 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 156 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~----~~~~~~~a~~~L~~l~~~~ 231 (402)
.|++|.|+.+|.+++.++++.|+|+|+||+.+++.+|+.+.+.|++++|+.++.... ...+++.++|++++++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999995432 3467899999999999987
Q ss_pred -CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 232 -PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 232 -~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
+........+++|.|+.++.+++++++..++|+|++++.+.++..+.+.+.|+++.|+.+|.++++.++.+++++|+|+
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 6666777789999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 015687 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 390 (402)
Q Consensus 311 ~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 390 (402)
+.+++..+..+++.|+++.|+.+|.++ ++.++++|+|+|+||+.++++++..+++.|++|.|+.++.+++++++++|+|
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~ 399 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW 399 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCC
Q 015687 391 AISNATSGGS 400 (402)
Q Consensus 391 aL~nl~~~~~ 400 (402)
+|+|++.+|+
T Consensus 400 aL~nl~~~~~ 409 (529)
T 3tpo_A 400 AITNYTSGGT 409 (529)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHcCCC
Confidence 9999998765
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-56 Score=433.18 Aligned_cols=399 Identities=87% Similarity=1.305 Sum_probs=319.5
Q ss_pred CCCCCCCccHHHhhhccCCCCchHHhhhhHHHHHHHHHHhhhHHHHhhhhccccCCCC-CcchhhhhhhhhccHHHHHHh
Q 015687 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQP-LTNSAALDNKKLESLPAMVAG 79 (402)
Q Consensus 1 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~~~~kr~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~ 79 (402)
|++.++.+++.|+++||++++++|+|+||+++.++|||+||+|++.|||++....+.. ++.......+....+|.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~ 82 (528)
T 4b8j_A 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAMIGG 82 (528)
T ss_dssp ------------------------CCCCC-----------------CCCC----------------------CHHHHHHH
T ss_pred CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccccchhhhHHHHHHHHHH
Confidence 6777777889999999999999999999999999999999999999999974322221 110011111233579999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCch
Q 015687 80 VWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV 159 (402)
Q Consensus 80 l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i 159 (402)
|.++++..+..|++.|+++++.+.+++.+.+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|++
T Consensus 83 L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 162 (528)
T 4b8j_A 83 VYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAV 162 (528)
T ss_dssp HTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcH
Confidence 99999999999999999999877558889999999999999999987658999999999999999889999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhh
Q 015687 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239 (402)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 239 (402)
+.|+.+|.++++.+++.|+|+|+||+.+.+.++..+...|++++|+.++..+.+..++..++|+|.+|+...+.......
T Consensus 163 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 242 (528)
T 4b8j_A 163 PIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 242 (528)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 99999999999999999999999999999989999999999999999997678899999999999999999877777778
Q ss_pred hchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 015687 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 319 (402)
Q Consensus 240 ~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~ 319 (402)
.+++|.|+.+|.+++++++..++|+|++++.+.+..++.+++.|+++.|+.+|.++++.++..|+++|+|++.+++...+
T Consensus 243 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 322 (528)
T 4b8j_A 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322 (528)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999888888899999999999999999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 320 ~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
.+++.|++|.|+.+|.++.++.++++|+|+|+||+.++++++..+++.|++|.|+.+|.+++++++.+|+|+|+|++.+|
T Consensus 323 ~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~ 402 (528)
T 4b8j_A 323 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGG 402 (528)
T ss_dssp HHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999987657899999999999999999999999999999999999999999999999999999999875
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-52 Score=407.40 Aligned_cols=391 Identities=55% Similarity=0.826 Sum_probs=340.8
Q ss_pred ccHHHhhhccC-C-CCchHHhhhhHHHHHHHHHHhhhHHHHhhhhcccc---CCCCCcch-----hhhhh-hhhccHHHH
Q 015687 8 RTEVRRSKYKV-A-VDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQ---AHQPLTNS-----AALDN-KKLESLPAM 76 (402)
Q Consensus 8 ~~~~~~~~~k~-~-~~~~~~r~~r~~~~~~lRk~~r~~~~~~kr~~~~~---~~~~~~~~-----~~~~~-~~~~~i~~l 76 (402)
+++.|++.||+ | ++++|+||||+++.++|||+||++++.|||++... .+..++.+ ..... ...+.++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 92 (530)
T 1wa5_B 13 VPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM 92 (530)
T ss_dssp CCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHH
T ss_pred chHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHHH
Confidence 55789999999 8 99999999999999999999999999999997542 11111100 00110 122579999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhC
Q 015687 77 VAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH 156 (402)
Q Consensus 77 ~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 156 (402)
++.|+++++..+..|+..|+++++.+.+++.+.+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.
T Consensus 93 v~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~ 172 (530)
T 1wa5_B 93 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA 172 (530)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHC
Confidence 99999999999999999999998876567788899999999999999987338999999999999999888899999999
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-CCCc
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL 235 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 235 (402)
|+++.|+.+|.++++.+++.|+|+|++++.+.+..++.+...|+++.|+.++ .+.+..++..++|+|.+|+.+. +...
T Consensus 173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~ 251 (530)
T 1wa5_B 173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD 251 (530)
T ss_dssp TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 9999999999999999999999999999999888999999999999999999 5588899999999999999987 6667
Q ss_pred hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 015687 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 236 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~ 315 (402)
.....+++|.|+.+|.++++.++..++|+|.+++...++..+.+++.|+++.|+.+|.++++.++..|+++|++++.+++
T Consensus 252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~ 331 (530)
T 1wa5_B 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 331 (530)
T ss_dssp HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH
Confidence 77778999999999999999999999999999998888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 316 ~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
...+.+++.|++|.|+.+|.++ ++.++..|+|+|+|++.+++++++.+++.|+++.|+.+|.+++++++..|+|+|+|+
T Consensus 332 ~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l 410 (530)
T 1wa5_B 332 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 410 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8889999999999999999998 999999999999999999899999999999999999999999999999999999999
Q ss_pred hcCCC
Q 015687 396 TSGGS 400 (402)
Q Consensus 396 ~~~~~ 400 (402)
+.+|+
T Consensus 411 ~~~~~ 415 (530)
T 1wa5_B 411 SSGGL 415 (530)
T ss_dssp HHHTT
T ss_pred HhcCC
Confidence 98764
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=391.12 Aligned_cols=371 Identities=47% Similarity=0.789 Sum_probs=310.5
Q ss_pred hHHHHHHHHHHhhhHHHHhhhhccccCCCCCcchhhhhhhhh-ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCch
Q 015687 29 REDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKL-ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPI 107 (402)
Q Consensus 29 r~~~~~~lRk~~r~~~~~~kr~~~~~~~~~~~~~~~~~~~~~-~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~ 107 (402)
|....++.|+++++......++....+++.+..+........ ..++.+++.++|+|++.|+.|+..+|+++|.+++||+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi 93 (510)
T 3ul1_B 14 RGSGMLETAAALFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPI 93 (510)
T ss_dssp ---------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCH
T ss_pred CCcccHHHHHHHHHhhccCCccccCCccccchhhhccccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchH
Confidence 334556777777777766666654433332111111111111 2589999999999999999999999999999989999
Q ss_pred hHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCC
Q 015687 108 NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187 (402)
Q Consensus 108 ~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~ 187 (402)
+.+++.|++|.|+++|++++++.+|.+|+|+|+||++++++++..+++.|++|.|+.+|.+++.+++++|+|+|+||+.+
T Consensus 94 ~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 173 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998766689999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHhcCChHHHHHHhccch----hhHHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhccCCChhHHHHHH
Q 015687 188 SPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDAC 262 (402)
Q Consensus 188 ~~~~~~~~~~~g~i~~L~~~l~~~~----~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 262 (402)
++.+|+.+.+.|++++|+.++.... ...+++.++|++++++.+. +........+++|.|+.++.+++++++..++
T Consensus 174 ~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~ 253 (510)
T 3ul1_B 174 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 253 (510)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999995432 3457899999999999987 6666677789999999999999999999999
Q ss_pred HHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhH
Q 015687 263 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI 342 (402)
Q Consensus 263 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v 342 (402)
|+|++++.+.++..+.+.+.|+++.|+.+|.+++..++.+++++|+|++.+++..+..+++.|+++.|..+|.++ ++.+
T Consensus 254 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v 332 (510)
T 3ul1_B 254 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNI 332 (510)
T ss_dssp HHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHH
T ss_pred HHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHH
Confidence 999999999988888899999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCCC
Q 015687 343 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 343 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
++.|+|+|+||+.++++++..+++.|++|.|+.++.+++++++++|+|+|+|++.+|+
T Consensus 333 ~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~ 390 (510)
T 3ul1_B 333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT 390 (510)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999999999999999998764
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=308.65 Aligned_cols=327 Identities=62% Similarity=0.968 Sum_probs=302.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhc-CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
.++.+++.++++++..+..|+..|+++++...+++.+.+++. |+++.|+++|.+++++.++..|+++|++++.++++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 378999999999999999999999999875546677778888 9999999999998338999999999999999878888
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
..+++.|++|.|+.+|.++++.+++.|+++|++++.+.+..++.+.+.|+++.++.++..+.+..++..++|+|.+++.+
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 88899999999999999999999999999999999999889999999999999999995557899999999999999988
Q ss_pred C-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 015687 231 K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (402)
Q Consensus 231 ~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~n 309 (402)
. +........+++|.|+.++.++|+.++..++|+|.+++...++....+.+.|+++.|+.+|.++++.++..|+++|++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 6 655666668999999999999999999999999999998887777888899999999999999999999999999999
Q ss_pred hhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHH
Q 015687 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 389 (402)
Q Consensus 310 l~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 389 (402)
++.+.+...+.+++.|+++.|+.++.++ ++.++..|+|+|+|++.++++.++.+++.|+++.|+.++.+++++++.+|+
T Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~ 339 (450)
T 2jdq_A 261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339 (450)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 9999988888899999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCC
Q 015687 390 WAISNATSGG 399 (402)
Q Consensus 390 ~aL~nl~~~~ 399 (402)
|+|+|++.++
T Consensus 340 ~~L~~l~~~~ 349 (450)
T 2jdq_A 340 WAITNATSGG 349 (450)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHcCC
Confidence 9999998764
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=314.65 Aligned_cols=324 Identities=28% Similarity=0.440 Sum_probs=294.0
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
|.+|.|++.|.+ +++.+++.|+++|.++++++ ......+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++.
T Consensus 119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~~ 196 (529)
T 3tpo_A 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSAF 196 (529)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHHH
Confidence 789999999975 56899999999999998764 556678999999999999999998 999999999999999988999
Q ss_pred hHHHHhCCchHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHH
Q 015687 150 TRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 224 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L 224 (402)
+..+++.|+++.|+.+|..++ ..+...++|+|.|++.+...........|+++.|+.++ .+++++++..++|+|
T Consensus 197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL 275 (529)
T 3tpo_A 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI 275 (529)
T ss_dssp HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHH
Confidence 999999999999999998643 45788999999999987765555666677899999999 788899999999999
Q ss_pred HHhhhCCCCC-chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHH
Q 015687 225 SNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 303 (402)
Q Consensus 225 ~~l~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a 303 (402)
++++.+.+.. ......+++|.|+.+|.++++.++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..|
T Consensus 276 ~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a 355 (529)
T 3tpo_A 276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 355 (529)
T ss_dssp HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHH
Confidence 9999875322 223347899999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCH
Q 015687 304 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEF 382 (402)
Q Consensus 304 ~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~ 382 (402)
+++|+|++.+++.+...+++.|++|.|+.++.++ ++.++++|+|+|+|++. ++++++..+++.|+++.|+++|.+.|+
T Consensus 356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~ 434 (529)
T 3tpo_A 356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 434 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCH
Confidence 9999999999999999999999999999999999 99999999999999997 688999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 015687 383 EIKKEAAWAISNATSG 398 (402)
Q Consensus 383 ~v~~~a~~aL~nl~~~ 398 (402)
+++..++++|.|+...
T Consensus 435 ~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 435 KIIQVILDAISNIFQA 450 (529)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998753
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=314.19 Aligned_cols=324 Identities=28% Similarity=0.444 Sum_probs=293.5
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
|.+|.|++.|++ +++.+|+.|+++|.++++++ .+..+.+++.|++|.|+++|.+++ ++++..|+|+|+||+.++++.
T Consensus 100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 789999999985 56899999999999998765 667788999999999999999988 999999999999999988899
Q ss_pred hHHHHhCCchHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHH
Q 015687 150 TRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 224 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L 224 (402)
+..+.+.|+++.|+.++.+++ ..+...++|++.|++.+...........|+++.|+.++ .+.+++++..++|+|
T Consensus 178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL 256 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI 256 (510)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence 999999999999999998754 45778999999999987655555556677899999999 788899999999999
Q ss_pred HHhhhCCCCC-chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHH
Q 015687 225 SNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 303 (402)
Q Consensus 225 ~~l~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a 303 (402)
++|+.+.+.. ......+++|.|+.+|.+.+..++..++++|++++.+++.....+++.|+++.|+.+|.+++..++..|
T Consensus 257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A 336 (510)
T 3ul1_B 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336 (510)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence 9999875322 223347899999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCH
Q 015687 304 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEF 382 (402)
Q Consensus 304 ~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~ 382 (402)
+++|+|++.+++.+...+++.|++|.|+.++.++ ++.++++|+|+|+|++. ++++++..+++.|+++.|+++|.+.|+
T Consensus 337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~ 415 (510)
T 3ul1_B 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH
Confidence 9999999999999999999999999999999999 99999999999999997 688999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 015687 383 EIKKEAAWAISNATSG 398 (402)
Q Consensus 383 ~v~~~a~~aL~nl~~~ 398 (402)
+++..++++|.|+...
T Consensus 416 ~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 416 KIIQVILDAISNIFQA 431 (510)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998753
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-40 Score=322.06 Aligned_cols=320 Identities=16% Similarity=0.171 Sum_probs=278.1
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHh-hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 73 LPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 73 i~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
++.++++|.++ |++.+..|++.|..+.. . .+....++ +.|++|.|+++|++++ +.+++.|+|+|+||+.++++.
T Consensus 379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~-~-~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~q 455 (810)
T 3now_A 379 AEACRRFLIKPGKDKDIRRWAADGLAYLTL-D-AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQ 455 (810)
T ss_dssp HHHHHHHHHCSSCCSSHHHHHHHHHHHHTT-S-HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhC-C-cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchhh
Confidence 57788888887 89999999999999943 2 34444444 6899999999999988 899999999999999865321
Q ss_pred --------------------------------hHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHh
Q 015687 150 --------------------------------TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 197 (402)
Q Consensus 150 --------------------------------~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 197 (402)
.+.+++.|++|.|+.+++++++.++++|+|+|+||+.+. .+|..+++
T Consensus 456 ~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-~~r~~Vv~ 534 (810)
T 3now_A 456 EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK-ELRGKVVQ 534 (810)
T ss_dssp CCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-HHHHHHHH
T ss_pred hhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHH
Confidence 267899999999999999999999999999999999764 58999999
Q ss_pred cCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-CCCch--hhhhchHHHHHHhccCCC-hhHHHHHHHHHHHhccCCh
Q 015687 198 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLF--EQTRPALPALERLIHSND-DEVLTDACWALSYLSDGTN 273 (402)
Q Consensus 198 ~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~--~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~~l~~~~~ 273 (402)
.|++++|+.++ .+.+...++.|+|+|.+|+.+. |...+ ....+++|.|+.+|.+++ ......++|+|.||+..++
T Consensus 535 ~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d 613 (810)
T 3now_A 535 EGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNE 613 (810)
T ss_dssp TTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred CCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCH
Confidence 99999999999 6667788999999999999864 22211 123568999999998663 3445789999999999988
Q ss_pred HHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHh-CCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 015687 274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTISN 352 (402)
Q Consensus 274 ~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~n 352 (402)
+..+.+++.|+++.|+.+|.++++.++.+|+++|+|++.+++.+.. +++ .|.++.|+.++.++ +..++++|+|+|+|
T Consensus 614 ~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~-~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALan 691 (810)
T 3now_A 614 SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM-FEGNNDRVKFLALLCEDE-DEETATACAGALAI 691 (810)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH-HHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH-HHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999997665444 554 79999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHH-cCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 353 ITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 353 l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
|+.+++.+++.+++ .|+++.|+++|.++++++++.|+|+|.|++.++
T Consensus 692 Lt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s 739 (810)
T 3now_A 692 ITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG 739 (810)
T ss_dssp HHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC
Confidence 99988999999998 899999999999999999999999999999864
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=302.95 Aligned_cols=324 Identities=20% Similarity=0.197 Sum_probs=258.2
Q ss_pred hhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCch-hHHhhcCcHHHHHHhhcCCCC-----------HHHHHHH
Q 015687 68 KKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPI-NEVIQSGVVPRFIEFLSRDDF-----------PQLQFEA 135 (402)
Q Consensus 68 ~~~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~-~~~~~~g~i~~L~~lL~~~~~-----------~~~~~~a 135 (402)
++++.++.++..+.+.|+.. .++++++.+.++++ ..+++.|++|.|+++|+..+. ++++.+|
T Consensus 29 ~~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a 102 (458)
T 3nmz_A 29 TKVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA 102 (458)
T ss_dssp ----------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHH
Confidence 45577899999999888773 44444444445555 779999999999999997542 6999999
Q ss_pred HHHHHHhhcCCCcchHHHHhCCch----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCCchh
Q 015687 136 AWALTNIASGTSENTRVVIDHGAV----------PIFVRLLSSPT--DD-----VRE-------QAVWALGNVAGDSPKC 191 (402)
Q Consensus 136 ~~~L~~l~~~~~~~~~~~~~~g~i----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~nl~~~~~~~ 191 (402)
+|+|+||+.++++.+....+.|++ +.+++++.+.. .+ +++ +|+|+|+|++.+ +++
T Consensus 103 ~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~ 181 (458)
T 3nmz_A 103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEH 181 (458)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHH
Confidence 999999999999999999998888 77777787642 22 555 999999999776 779
Q ss_pred hHHHHhcCChHHHHHHhcc----------chhhHHHHHHHHHHHHhhhCCCCCchhh--hhchHHHHHHhccCCChhHHH
Q 015687 192 RDLVLSNGALMPLLAQFNE----------HAKLSMLRNATWTLSNFCRGKPQPLFEQ--TRPALPALERLIHSNDDEVLT 259 (402)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~l~~L~~lL~~~~~~v~~ 259 (402)
|+.+.+.|++++|+.++.. +.++.+++.++|+|.|||.+++...... ..+++|.|+.+|.+++++++.
T Consensus 182 R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~ 261 (458)
T 3nmz_A 182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ 261 (458)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHH
Confidence 9999999999999999942 2457899999999999998864333222 356799999999999999999
Q ss_pred HHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHHHHHhhcCChHHHHHHH-hCCChHHHHHHhcC
Q 015687 260 DACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQ 336 (402)
Q Consensus 260 ~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~~L-~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~-~~~~l~~L~~ll~~ 336 (402)
.++|+|.||+.. +++....+.+.|+++.|+.+| .+.+..++..|+.+|+|++.++++....+. ..|++|.|+.+|.+
T Consensus 262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~ 341 (458)
T 3nmz_A 262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 341 (458)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence 999999999985 556678889999999999975 667889999999999999996655555565 78999999999987
Q ss_pred CCch----hHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 337 NYKK----SIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 337 ~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
+ ++ .+++.|+|+|.||+. +++++++.+++.|+++.|+.+|.+++.+++++|+|+|+|++.+.
T Consensus 342 ~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~ 410 (458)
T 3nmz_A 342 R-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN 410 (458)
T ss_dssp C-CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC
T ss_pred C-CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC
Confidence 7 44 499999999999997 78999999999999999999999999999999999999999653
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=297.56 Aligned_cols=326 Identities=17% Similarity=0.186 Sum_probs=277.1
Q ss_pred hccHHHHHHhhcCC------------CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcH----------HHHHHhhcCCC
Q 015687 70 LESLPAMVAGVWSD------------DRNIQLDATTQFRKLLSIERSPPINEVIQSGVV----------PRFIEFLSRDD 127 (402)
Q Consensus 70 ~~~i~~l~~~l~s~------------~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i----------~~L~~lL~~~~ 127 (402)
-|.+|.|++.|+.. ++++++.|+++|.++++++ ++..+...+.|++ +.+++++.+..
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE 147 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence 38999999999963 3799999999999999986 6666777777777 77778887642
Q ss_pred -CHH-----HHH-------HHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC-----------CCHHHHHHHHHHHHH
Q 015687 128 -FPQ-----LQF-------EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGN 183 (402)
Q Consensus 128 -~~~-----~~~-------~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~n 183 (402)
..+ ++. .|+|+|.|++.+ ++++..+++.|++++|+.+|.. .++.++..|+|+|.|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n 226 (458)
T 3nmz_A 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN 226 (458)
T ss_dssp SSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred cccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence 012 333 899999999876 8999999999999999999941 357799999999999
Q ss_pred hhCCCchhhHHHHh-cCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-C-CCchhhhhchHHHHHHhc-cCCChhHHH
Q 015687 184 VAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-P-QPLFEQTRPALPALERLI-HSNDDEVLT 259 (402)
Q Consensus 184 l~~~~~~~~~~~~~-~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~-~~~~~~~~~~l~~L~~lL-~~~~~~v~~ 259 (402)
|+.+++..+..+.. .|+++.|+.+| .+++++++..++|+|.||+... + ........+++|.|+++| .+.++.++.
T Consensus 227 La~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~ 305 (458)
T 3nmz_A 227 LTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLK 305 (458)
T ss_dssp HHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHH
T ss_pred HhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHH
Confidence 99988777766654 56699999999 6788999999999999999752 2 222333478999999975 667899999
Q ss_pred HHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhcCCCCh----hhHHHHHHHHHHhhc---CChHHHHHHHhCCChHHHH
Q 015687 260 DACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPSP----SVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLL 331 (402)
Q Consensus 260 ~a~~~l~~l~~~~~~~~~~~~-~~~~i~~L~~~L~~~~~----~v~~~a~~~l~nl~~---~~~~~~~~i~~~~~l~~L~ 331 (402)
.++.+|.||+.+.++....+. ..|+++.|+.+|.+.++ .++..|+++|.|++. +++++++.+++.|++|.|+
T Consensus 306 ~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv 385 (458)
T 3nmz_A 306 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL 385 (458)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHH
Confidence 999999999985544444555 78999999999987654 489999999999997 7888999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 332 DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 332 ~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
.+|.++ +..++++|+|+|+|++.++++++..+++.|++|.|+++|.++++++++.|+|+|.||+.+.
T Consensus 386 ~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 386 QHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999998 8999999999999999888999999999999999999999999999999999999999864
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-37 Score=291.81 Aligned_cols=324 Identities=27% Similarity=0.380 Sum_probs=289.9
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
+.+|.+++.++++ ++..+..|+++|.++.+.. .+....+++.|+++.|+++|++++ +.++..|+++|++++.++++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence 5689999999998 8999999999999997653 455667788999999999999988 999999999999999988888
Q ss_pred hHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-chhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 150 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
+..+++.|+++.|+.++.+ ++..++..++|+|++++.+. +..+..+ ..++++.|+.++ .+.++.++..++|+|.++
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 9999999999999999995 78999999999999999765 4333333 378999999999 677889999999999999
Q ss_pred hhCCC-CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHH
Q 015687 228 CRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306 (402)
Q Consensus 228 ~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~ 306 (402)
+...+ ........+++|.|+.+|.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 98752 22223336899999999999999999999999999999888877888889999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 015687 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385 (402)
Q Consensus 307 l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 385 (402)
|++++.+++...+.+++.|++|.|+.++.++ ++.+|..|+|+|+|++.+ ++++++.+++.|+++.|+.++.+++++++
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 9999999988888899999999999999988 999999999999999974 78889999999999999999999999999
Q ss_pred HHHHHHHHHhhcCC
Q 015687 386 KEAAWAISNATSGG 399 (402)
Q Consensus 386 ~~a~~aL~nl~~~~ 399 (402)
..|+++|.+++..+
T Consensus 379 ~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 379 QVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998654
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=294.69 Aligned_cols=324 Identities=27% Similarity=0.398 Sum_probs=293.5
Q ss_pred ccHHHHHHhhcCCC-HHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
+.+|.|++.|.+++ +.++..|+++|.++.+.. ......+++.|+++.|+.+|.+++ +.++..|+|+|++|+.+++..
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 67999999999887 999999999999998753 556677889999999999999987 999999999999999988888
Q ss_pred hHHHHhCCchHHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhh
Q 015687 150 TRVVIDHGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~ 228 (402)
+..+.+.|+++.|+.+| .+.+..++..++|+|++++...+.. ......|+++.|+.++ .+.++.++..++|+|.+++
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 6789999999999999999876543 4445688999999999 7788999999999999999
Q ss_pred hCCCCC-chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC-ChhhHHHHHHH
Q 015687 229 RGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRT 306 (402)
Q Consensus 229 ~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~-~~~v~~~a~~~ 306 (402)
...+.. ......+++|.|+.+|.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 774322 2233468999999999999999999999999999998888888899999999999999988 89999999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 015687 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385 (402)
Q Consensus 307 l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 385 (402)
|+|++.+++.....+++.|++|.|+.+|.++ ++.++..|+|+|+|++.+ +++....+++.|+++.|+.+|.+++++++
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~ 431 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIV 431 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 9999999888899999999999999999998 999999999999999984 78999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCC
Q 015687 386 KEAAWAISNATSGG 399 (402)
Q Consensus 386 ~~a~~aL~nl~~~~ 399 (402)
..|+++|.+++..+
T Consensus 432 ~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 432 TVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998644
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=293.17 Aligned_cols=325 Identities=27% Similarity=0.376 Sum_probs=291.9
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
+.+|.+++.|.++ ++.++..|+++|.++.+.. ......+++.|+++.|+.+|.+++ +.++..|+|+|++++.++++.
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence 6899999999987 8999999999999997643 445667889999999999999887 999999999999999987888
Q ss_pred hHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
+..+...|+++.|+.++.+++..++..++|+|++++.+...........|+++.|+.++ .+.++.++..++|+|.+|+.
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999987622345566688999999999 67789999999999999998
Q ss_pred CCCCC-chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHH
Q 015687 230 GKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (402)
Q Consensus 230 ~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~ 308 (402)
..+.. ......+++|.|+.+|.+.++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 74322 22223589999999999999999999999999999988888888899999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCH--HHHHHHHHcCCHHHHHHHhccCCHHHH
Q 015687 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNV--NQIQAIIEAGIIGPLVNLLLNAEFEIK 385 (402)
Q Consensus 309 nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~ 385 (402)
+++.+++.+.+.+++.|++|.|+.+|.++ ++.++..|+|+|+|++. +.+ ++...+++.|+++.|+.++.+++++++
T Consensus 367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 445 (530)
T 1wa5_B 367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 99999888888899999999999999988 99999999999999997 455 788899999999999999999999999
Q ss_pred HHHHHHHHHhhcCC
Q 015687 386 KEAAWAISNATSGG 399 (402)
Q Consensus 386 ~~a~~aL~nl~~~~ 399 (402)
..|+++|.+++..+
T Consensus 446 ~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 446 EVTLDALENILKMG 459 (530)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998653
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-37 Score=291.50 Aligned_cols=320 Identities=18% Similarity=0.219 Sum_probs=269.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.+|.+++.|++++++.+..|+.+|+++...+ ++....+.+.|++|.|+++|++++ +.++..|+|+|+||+.++++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 5799999999999999999999999986432 344558899999999999999888 99999999999999998899999
Q ss_pred HHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc--------c-------hhhH
Q 015687 152 VVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------H-------AKLS 215 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~--------~-------~~~~ 215 (402)
.+++.|++|.|+.+|. ++++++++.++|+|+||+.+ +..+..+.+ |++++|+.++.. . .+..
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 88999999999999999998 568888888 999999999931 1 3567
Q ss_pred HHHHHHHHHHHhhhCCCCCchhhh-h-chHHHHHHhccC-----------------------------------------
Q 015687 216 MLRNATWTLSNFCRGKPQPLFEQT-R-PALPALERLIHS----------------------------------------- 252 (402)
Q Consensus 216 ~~~~a~~~L~~l~~~~~~~~~~~~-~-~~l~~L~~lL~~----------------------------------------- 252 (402)
+++.++|+|+|||.+ +....... . |++|.|+.+|.+
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 888999999999986 32222222 2 666666655532
Q ss_pred ----------------------------------------------------------CChhHHHHHHHHHHHhccCChH
Q 015687 253 ----------------------------------------------------------NDDEVLTDACWALSYLSDGTND 274 (402)
Q Consensus 253 ----------------------------------------------------------~~~~v~~~a~~~l~~l~~~~~~ 274 (402)
.++.+++.++|+|+|++.+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 2356777789999999976543
Q ss_pred H---H-HHHH-HhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCc------hhHH
Q 015687 275 K---I-QAVI-EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK------KSIK 343 (402)
Q Consensus 275 ~---~-~~~~-~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~------~~v~ 343 (402)
. + +.++ +.|+++.|+.+|.+++..++..|+++|+|++.+. ....++..|++|.|+++|.++ + +++.
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~-~~~~~~~~~v~ 394 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSH-TGNTSNSEDIL 394 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSC-CSCSTTHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCC-CCCCCCcHHHH
Confidence 2 2 3344 5799999999999999999999999999999853 344566778999999999876 3 3688
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC-CHHHHHHHHHHHHHhhcCC
Q 015687 344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 344 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~ 399 (402)
..++++|.|+..+++++...+.+.|+++.|++++.++ +.++++.|+|+|.|+..+.
T Consensus 395 ~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 395 SSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 8999999999998899999999999999999999999 8999999999999998764
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-37 Score=300.93 Aligned_cols=326 Identities=14% Similarity=0.098 Sum_probs=280.1
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCC----------------------------c---hhHHhhcCcHHH
Q 015687 70 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSP----------------------------P---INEVIQSGVVPR 118 (402)
Q Consensus 70 ~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~----------------------------~---~~~~~~~g~i~~ 118 (402)
.+.+|.|++.++++++..++.|+++|.++..+.+.. . ++.+++.|++|.
T Consensus 420 ~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~ 499 (810)
T 3now_A 420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA 499 (810)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence 367999999999999999999999999998643111 0 267889999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhh-HHHH
Q 015687 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCR-DLVL 196 (402)
Q Consensus 119 L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~-~~~~ 196 (402)
|+.+|.+++ +.++..|+|+|+||+.+ ++++..+++.|++|+|+.+|.++++..++.|+|+|+|++.+. +... ....
T Consensus 500 LV~LL~s~s-~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~ 577 (810)
T 3now_A 500 LCALAKTES-HNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQR 577 (810)
T ss_dssp HHHHHTCCC-HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHH
T ss_pred HHHHHcCCC-HHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchh
Confidence 999999988 99999999999999964 789999999999999999999999999999999999998643 3210 0001
Q ss_pred hcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCC-CchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHH
Q 015687 197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 275 (402)
Q Consensus 197 ~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~ 275 (402)
..|++++|+.+|..+.+...+..++|+|.||+...+. .......+++|.|+.+|.++++.++..|+++|+|++.+++..
T Consensus 578 ~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~ 657 (810)
T 3now_A 578 SLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI 657 (810)
T ss_dssp HHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH
T ss_pred hhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH
Confidence 2469999999995333444557899999999988532 223334689999999999999999999999999999876644
Q ss_pred HHHHHH-hCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHh-CCChHHHHHHhcCCCchhHHHHHHHHHHHH
Q 015687 276 IQAVIE-AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (402)
Q Consensus 276 ~~~~~~-~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl 353 (402)
..+++ .|.++.|+.++.+++..++..|+++|+|++.+++.+.+.+++ .|++|.|+.++.++ ++.+++.|+|+|+|+
T Consensus 658 -~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL 735 (810)
T 3now_A 658 -KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNM 735 (810)
T ss_dssp -HHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHH
T ss_pred -HHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence 44555 689999999999999999999999999999988888999998 89999999999998 999999999999999
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHHhccC---CHHHHHHHHHHHHHhhcCC
Q 015687 354 TAGNVNQIQAIIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 354 ~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~nl~~~~ 399 (402)
+.+++++...+++.|+++.|++++... +.++.+.|..+|.++...|
T Consensus 736 ~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 736 INAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 998899999999999999999999765 6899999999999998655
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=282.56 Aligned_cols=322 Identities=19% Similarity=0.196 Sum_probs=264.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcC-CCcc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG-TSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~-~~~~ 149 (402)
+.+|.+++.|.++++..+..|+++|+++.... .++...+++.|+||.|+++|.+++ +.++..|+|+|+||+.+ ++++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence 57999999999999999999999999997643 677788999999999999999988 99999999999999985 5899
Q ss_pred hHHHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc-----------------cc
Q 015687 150 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-----------------EH 211 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~-----------------~~ 211 (402)
+..+++.|+||.|+.+|.+ .+.++++.++++|+||+.. +.++..+.+ ++++.|+.++. ..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999996 6889999999999999985 457777775 57999999762 11
Q ss_pred hhhHHHHHHHHHHHHhhhCCCC-Cchhh----------------------------------------------------
Q 015687 212 AKLSMLRNATWTLSNFCRGKPQ-PLFEQ---------------------------------------------------- 238 (402)
Q Consensus 212 ~~~~~~~~a~~~L~~l~~~~~~-~~~~~---------------------------------------------------- 238 (402)
.++.++.+++++|.||+...+. .....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 2457777777777777654311 00000
Q ss_pred ----------------------hhchHHHHHHhcc-CCChhHHHHHHHHHHHhccCChH---HHH-HHHHhCcHHHHHHh
Q 015687 239 ----------------------TRPALPALERLIH-SNDDEVLTDACWALSYLSDGTND---KIQ-AVIEAGVCPRLVEL 291 (402)
Q Consensus 239 ----------------------~~~~l~~L~~lL~-~~~~~v~~~a~~~l~~l~~~~~~---~~~-~~~~~~~i~~L~~~ 291 (402)
-.++++.++.+|. +.++.++++|+|+|.||+.+... ..+ .+.+.++++.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 0123445566664 45688889999999999866421 222 33456889999999
Q ss_pred cCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC-------chhHHHHHHHHHHHHhcCCHHHHHHH
Q 015687 292 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-------KKSIKKEACWTISNITAGNVNQIQAI 364 (402)
Q Consensus 292 L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~-------~~~v~~~a~~~L~nl~~~~~~~~~~l 364 (402)
|.+++..++..|+++|+|++.+... +.++..|++|.|+.+|.++. ...+...|||+|+||+.+++++.+.+
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~~--~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I 441 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDARN--KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKL 441 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCChhH--HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999999999987653 34567899999999998762 25688999999999999999999999
Q ss_pred HHcCCHHHHHHHhccC--CHHHHHHHHHHHHHhhcC
Q 015687 365 IEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSG 398 (402)
Q Consensus 365 ~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~ 398 (402)
++.|+++.|+.++.++ .+++++.|+|+|+|++.+
T Consensus 442 ~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 442 RETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred HHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 9999999999999986 789999999999999864
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=260.14 Aligned_cols=268 Identities=19% Similarity=0.193 Sum_probs=234.0
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCCchhhHHHHh
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLS 197 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 197 (402)
...+..|+|+|.|++.+ ++++..+++.|+++.|+.+|.. .++.++..|+|+|.||+.+++..+..+..
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35566899999999987 8999999999999999999942 34789999999999999888777777754
Q ss_pred -cCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-C-CCchhhhhchHHHHHHhc-cCCChhHHHHHHHHHHHhccCCh
Q 015687 198 -NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-P-QPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTN 273 (402)
Q Consensus 198 -~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~-~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~ 273 (402)
.|+++.|+.+| .+++++++..++|+|.||+... + ........+++|.|+++| .+.+++++..++++|.+|+...+
T Consensus 125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 45699999999 6788999999999999999852 2 222333478999999975 66789999999999999998665
Q ss_pred HHHHHHH-HhCcHHHHHHhcCCCCh----hhHHHHHHHHHHhhc---CChHHHHHHHhCCChHHHHHHhcCCCchhHHHH
Q 015687 274 DKIQAVI-EAGVCPRLVELLRHPSP----SVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 345 (402)
Q Consensus 274 ~~~~~~~-~~~~i~~L~~~L~~~~~----~v~~~a~~~l~nl~~---~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~ 345 (402)
+....+. ..|+++.|+.+|.+.++ .++..|+++|.|++. +++++++.+.+.|++|.|+.+|.++ +..++++
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence 5445555 78999999999987654 489999999999997 7888999999999999999999998 9999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 346 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
|+|+|+|++.+++++++.+++.|++|.|+++|.++++++++.|+|+|.||+.+.
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999888999999999999999999999999999999999999999864
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=272.14 Aligned_cols=322 Identities=19% Similarity=0.241 Sum_probs=274.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+.+|.+++.++++++..+..|+.+|.++.... ......+.+.|++|.|++++.+++ +.++..++.+|.+++.++++.+
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence 78999999999999999999999999997754 455667789999999999999987 8999999999999999888999
Q ss_pred HHHHhCCchHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 151 RVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
..+.+.|+++.|+.++.+. ....+..++.+|.+++.+ +..+..+.+.|+++.|+.++ .+.++.++..++|+|.+++.
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence 9999999999999999864 566778899999999975 45788999999999999999 56688999999999999998
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CChhhHHHHHHHH
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTV 307 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l 307 (402)
..+.. ....+++|.|++++.+++++++..++|+|++++.++++....+.+.|+++.|+.+|.+ +++.++..|+++|
T Consensus 257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 86432 2346899999999999999999999999999999888788889999999999999965 3478999999999
Q ss_pred HHhhcCChH---HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 015687 308 GNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384 (402)
Q Consensus 308 ~nl~~~~~~---~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 384 (402)
+|++.+.+. ....+.+.|++|.|+.+|.++.++.+++.++|+|+|++.+... ...+++.|++|.|+.++.++++++
T Consensus 335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v 413 (529)
T 1jdh_A 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT 413 (529)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHHHHHhHHH
Confidence 999986543 3567889999999999999883469999999999999986444 478889999999999999999999
Q ss_pred HHHHHHHHHH--hhcCC
Q 015687 385 KKEAAWAISN--ATSGG 399 (402)
Q Consensus 385 ~~~a~~aL~n--l~~~~ 399 (402)
|++|+|+++| +..++
T Consensus 414 ~~~a~~~l~n~~~~~~~ 430 (529)
T 1jdh_A 414 QRRTSMGGTQQQFVEGV 430 (529)
T ss_dssp C-----------CBTTB
T ss_pred HHHHhcccCchhhhccc
Confidence 9999999998 54443
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=268.27 Aligned_cols=282 Identities=18% Similarity=0.204 Sum_probs=239.8
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (402)
.+|.|+.+|++++ ++++..|+++|.+++.+++..+..+++.|++|.|+.+|+++++.++..|+|+|.||+.++++.+..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4899999999998 899999999999999887788889999999999999999999999999999999999988889999
Q ss_pred HHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhcc--------C--------CChhHH
Q 015687 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--------S--------NDDEVL 258 (402)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~--------~--------~~~~v~ 258 (402)
+.+.|++++|+.+|..+.++++++.++|+|+||+.+. ........+++|.|+.+|. + .++++.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH-HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 9999999999999954778999999999999999984 3333333499999999993 2 356778
Q ss_pred HHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC------CChhhHHHHHHHHHHhhcCC-----------------
Q 015687 259 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGD----------------- 314 (402)
Q Consensus 259 ~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~~L~~------~~~~v~~~a~~~l~nl~~~~----------------- 314 (402)
..++|+|.||+.. ++..+.+.+. |+++.|+.+|.+ .+..+.+.|+.++.|++...
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 8999999999987 6677888887 999999999975 45678889999999986321
Q ss_pred ---------------------------------hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH--
Q 015687 315 ---------------------------------DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN-- 359 (402)
Q Consensus 315 ---------------------------------~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-- 359 (402)
+...+.+++.|+++.|+.+|.++.++.+++.|+|+|+||+.++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 112234456678999999998775789999999999999986432
Q ss_pred -HH-HHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 360 -QI-QAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 360 -~~-~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
.+ +.++ +.|++|.|+++|.+++++++++|+|+|.|++.+.
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 23 4455 6899999999999999999999999999998753
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=260.32 Aligned_cols=274 Identities=19% Similarity=0.171 Sum_probs=237.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC----------CCHHHHHHHHHHHHHhhcCCCcchHHHH
Q 015687 85 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD----------DFPQLQFEAAWALTNIASGTSENTRVVI 154 (402)
Q Consensus 85 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 154 (402)
...+..|+++|.++. .+ .+..+.+++.|+++.|+.+|..+ +++.++..|+|+|.|++.++++.+..+.
T Consensus 46 ~~~~~~A~~aL~nls-~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 46 EHQICPAVCVLMKLS-FD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGTHHHHHHHHHHHH-TS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc-CC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345568999999994 43 57788899999999999999521 1267999999999999998666777775
Q ss_pred h-CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-
Q 015687 155 D-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK- 231 (402)
Q Consensus 155 ~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~- 231 (402)
. .|+||.|+.+|.++++++++.|+|+|+||+.. ++..+..+.+.|++++|+.+|..+.+..+++.++++|+||+...
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 4 46699999999999999999999999999985 56789999999999999998756678899999999999999854
Q ss_pred CCCchhh-hhchHHHHHHhccCCCh----hHHHHHHHHHHHhcc---CChHHHHHHHHhCcHHHHHHhcCCCChhhHHHH
Q 015687 232 PQPLFEQ-TRPALPALERLIHSNDD----EVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 303 (402)
Q Consensus 232 ~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a 303 (402)
....... ..+++|.|+.+|.+.++ +++..++|+|.|++. ..++..+.+.+.|+++.|+.+|.+.+..+++.|
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 283 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA 283 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence 2222222 47999999999987654 599999999999997 677778889999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 015687 304 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 361 (402)
Q Consensus 304 ~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~ 361 (402)
+++|+|++.+++++.+.+++.|++|.|+.++.++ ++.+++.|+|+|.||+.+++...
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999988899999999999999999999998 99999999999999999766643
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=273.75 Aligned_cols=317 Identities=19% Similarity=0.241 Sum_probs=272.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+.++.+++.|+++++.++..|+.+|.++.+.. ......+.+.|+++.|+++|.+++ +.++..++.+|.+++.++++.+
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~ 175 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 175 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence 68999999999999999999999999998764 566677889999999999999987 8888889999999998888999
Q ss_pred HHHHhCCchHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 151 RVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
..+.+.|+++.|+.++.+. ...++..++.+|.|++.+ +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999875 467889999999999965 45789999999999999999 56689999999999999998
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--ChhhHHHHHHHH
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTV 307 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~--~~~v~~~a~~~l 307 (402)
..+. .....+++|.|+.+|.+.+++++..++|+|++|+.++++..+.+.+.|+++.|+.+|.+. .+.++..|+++|
T Consensus 254 ~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 254 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 8633 234468999999999999999999999999999998888788899999999999999763 379999999999
Q ss_pred HHhhcCCh--HH-HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 015687 308 GNIVTGDD--MQ-TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384 (402)
Q Consensus 308 ~nl~~~~~--~~-~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 384 (402)
+|++...+ .. ...+++.|+++.|+++|.++.++.+++.|+|+|+||+.+... ...+++.|+++.|+++|.++++++
T Consensus 332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~v 410 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT 410 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhccchhh
Confidence 99997543 23 334778999999999999873469999999999999987554 488889999999999999888888
Q ss_pred HHHHHHHHHH
Q 015687 385 KKEAAWAISN 394 (402)
Q Consensus 385 ~~~a~~aL~n 394 (402)
|++|+|+++|
T Consensus 411 r~~a~~al~n 420 (644)
T 2z6h_A 411 QRRTSMGGTQ 420 (644)
T ss_dssp TTC-------
T ss_pred hhHhhhcccc
Confidence 8888887777
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-33 Score=264.19 Aligned_cols=291 Identities=18% Similarity=0.200 Sum_probs=242.0
Q ss_pred hHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCC
Q 015687 108 NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187 (402)
Q Consensus 108 ~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~ 187 (402)
..-...+.++.|+++|.+++ +++|..|+++|.+++.++++++..+++.|+||.|+.+|.+++.++++.|+|+|+||+..
T Consensus 42 ~~~~~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~ 120 (584)
T 3l6x_A 42 PPNWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG 120 (584)
T ss_dssp CCCCCCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSS
T ss_pred CCCcccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHcc
Confidence 33446778999999999988 99999999999999998899999999999999999999999999999999999999985
Q ss_pred -CchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhcc---------------
Q 015687 188 -SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--------------- 251 (402)
Q Consensus 188 -~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~--------------- 251 (402)
++.++..+.+.|++++|+.+|....+.++++.++++|++|+... ........+++|.|++++.
T Consensus 121 ~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k 199 (584)
T 3l6x_A 121 RDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCK 199 (584)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC--------
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhccccccccccccccc
Confidence 67899999999999999999965578889999999999999863 3344444678999999871
Q ss_pred ---CCChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC------CChhhHHHHHHHHHHhhcCChHH----
Q 015687 252 ---SNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDDMQ---- 317 (402)
Q Consensus 252 ---~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~~L~~------~~~~v~~~a~~~l~nl~~~~~~~---- 317 (402)
.++++++.+++++|.||+..+++..+.+++. |+++.|+.++.+ .+...++.|+++|.|++......
T Consensus 200 ~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~ 279 (584)
T 3l6x_A 200 PRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQA 279 (584)
T ss_dssp --CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTC
T ss_pred ccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccch
Confidence 2367999999999999998887766777775 667899999863 46678999999999999752211
Q ss_pred ---------------------HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH---HHHHHHH-HcCCHHH
Q 015687 318 ---------------------TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV---NQIQAII-EAGIIGP 372 (402)
Q Consensus 318 ---------------------~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~---~~~~~l~-~~~~i~~ 372 (402)
...+.+.++++.|+.+|.++.++.+++.|+|+|.||+.+.. ..++..+ +.+++|.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~ 359 (584)
T 3l6x_A 280 ERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSA 359 (584)
T ss_dssp CC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHH
T ss_pred hhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHH
Confidence 11112335567889999654489999999999999998642 2334344 5788999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhcCCC
Q 015687 373 LVNLLLNAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 373 L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
|+++|.+++.++++.|+|+|.||+.+..
T Consensus 360 Lv~LL~s~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 360 IADLLTNEHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCChh
Confidence 9999999999999999999999998754
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=259.70 Aligned_cols=322 Identities=16% Similarity=0.164 Sum_probs=281.2
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
+.++.+++.|.+ ++++.+..|+..|+++... ..+...+.+.|+++.|+++|.+++ +.++..|+++|.+++.+++..
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence 578999999975 4899999999999998543 357778889999999999999988 999999999999999987788
Q ss_pred hHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
+..+.+.|++|.|+.++.+++.+++..++.+|.+++..++..+..+.+.|+++.++.++....+......++.+|.+++.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999998888999999999999999999666667788889999999997
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~n 309 (402)
...........++++.|+.++.+++++++..++|++.+++....... ...|+++.|+.++.++++.++..|+++|++
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 64333333447899999999999999999999999999997654321 123789999999999999999999999999
Q ss_pred hhcCChHHHHHHHhCCChHHHHHHhcCC-CchhHHHHHHHHHHHHhcCCHH---HHHHHHHcCCHHHHHHHhccCC-HHH
Q 015687 310 IVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAGNVN---QIQAIIEAGIIGPLVNLLLNAE-FEI 384 (402)
Q Consensus 310 l~~~~~~~~~~i~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~-~~v 384 (402)
++.++++....+.+.|+++.|+.++.+. .++.++..|+++|+|++.++++ ....+++.|+++.|+.+|.+++ +.+
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v 372 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence 9998888899999999999999999763 1479999999999999986433 4567889999999999999876 599
Q ss_pred HHHHHHHHHHhhcC
Q 015687 385 KKEAAWAISNATSG 398 (402)
Q Consensus 385 ~~~a~~aL~nl~~~ 398 (402)
+++|+|+|+|++.+
T Consensus 373 ~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 373 IKATVGLIRNLALC 386 (529)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999975
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=228.44 Aligned_cols=244 Identities=32% Similarity=0.507 Sum_probs=219.8
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhH
Q 015687 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (402)
Q Consensus 114 g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (402)
|.++.|+++|.+++ ++++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..++++|++++.+++..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 56899999999998 99999999999999998778999999999999999999999999999999999999998887888
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 273 (402)
.+.+.|+++.++.++ .+++++++..++++|.+++...+
T Consensus 81 ~~~~~~~i~~l~~ll------------------------------------------~~~~~~v~~~a~~~L~~l~~~~~ 118 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL------------------------------------------TSTDSEVQKEAARALANIASGPD 118 (252)
T ss_dssp HHHHTTHHHHHHHHT------------------------------------------TCSSHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHH------------------------------------------cCCCHHHHHHHHHHHHHHHcCCH
Confidence 877776666655555 44556677777777777776666
Q ss_pred HHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHH
Q 015687 274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (402)
Q Consensus 274 ~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl 353 (402)
+....+.+.|+++.|+.++.++++.++..++++|++++.+++.....+.+.|+++.|+.++.++ ++.++..|+|+|+|+
T Consensus 119 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l 197 (252)
T 4hxt_A 119 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANI 197 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence 6667788899999999999999999999999999999999888888899999999999999988 999999999999999
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCCCC
Q 015687 354 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSS 401 (402)
Q Consensus 354 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~ 401 (402)
+.++++....+.+.|+++.|++++.++++++++.|+|+|.|++.....
T Consensus 198 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 198 ASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp TTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 998899999999999999999999999999999999999999987654
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.98 E-value=7e-31 Score=264.63 Aligned_cols=317 Identities=19% Similarity=0.248 Sum_probs=270.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+.++.|++.|+++++.++..|+.+|.++.... ......+.+.|+++.|+++|.+++ ..++..++.+|.+++.++++.+
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~ 311 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 311 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence 68999999999999999999999999998754 455666778999999999999987 8999999999999998888899
Q ss_pred HHHHhCCchHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 151 RVVIDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
..+.+.|+++.|+.++++.+ ...++.++.+|.+++... ..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~ 389 (780)
T 2z6g_A 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 389 (780)
T ss_dssp HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence 99999999999999998754 556778999999999754 4788999999999999999 66688899999999999998
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC-C-hhhHHHHHHHH
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-S-PSVLIPALRTV 307 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~-~-~~v~~~a~~~l 307 (402)
..+. .....+++|.|+.+|.+.++.++..++++|++|+.++++....+++.|+++.|+.+|.+. + +.++..|+++|
T Consensus 390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8633 223468999999999999999999999999999998888888899999999999999753 3 48999999999
Q ss_pred HHhhcCChH---HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 015687 308 GNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384 (402)
Q Consensus 308 ~nl~~~~~~---~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 384 (402)
+|++....+ ....+.+.|+++.|+.+|.++..+.+++.|+|+|+||+.+. .....+++.|+++.|+.+|.++++++
T Consensus 468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~ 546 (780)
T 2z6g_A 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT 546 (780)
T ss_dssp HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhcchhH
Confidence 999876543 23467889999999999998834599999999999999864 44578889999999999998877777
Q ss_pred HHHHHHHHHH
Q 015687 385 KKEAAWAISN 394 (402)
Q Consensus 385 ~~~a~~aL~n 394 (402)
+++|+|+++|
T Consensus 547 ~~~aa~al~n 556 (780)
T 2z6g_A 547 QRRTSMGGTQ 556 (780)
T ss_dssp HHTTC-----
T ss_pred HHHHhhcccc
Confidence 6666666655
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-30 Score=258.10 Aligned_cols=323 Identities=15% Similarity=0.159 Sum_probs=279.6
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
+.++.+++.|.++ +++.+..|+..|+++.. . ..+...+.+.|+++.|+++|++++ +.++..|+++|.+++...+..
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSH-H-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-S-HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-C-hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence 4689999999865 89999999999998754 3 346778889999999999999988 999999999999999987788
Q ss_pred hHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
+..+.+.|+++.|+.+|.+++..++..++.+|.+++...+..+..+.+.|+++.|+.++.......++..++.+|.+++.
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999988888899999999999999999666667888999999999997
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~n 309 (402)
...........++++.|+.++.+.+..++..++|+|.+++...... ....++++.|+.+|.++++.++..|+++|++
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6444344444789999999999999999999999999999754321 1123689999999999999999999999999
Q ss_pred hhcCChHHHHHHHhCCChHHHHHHhcCCCc-hhHHHHHHHHHHHHhcCCH--HH-HHHHHHcCCHHHHHHHhccCC-HHH
Q 015687 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISNITAGNV--NQ-IQAIIEAGIIGPLVNLLLNAE-FEI 384 (402)
Q Consensus 310 l~~~~~~~~~~i~~~~~l~~L~~ll~~~~~-~~v~~~a~~~L~nl~~~~~--~~-~~~l~~~~~i~~L~~ll~~~~-~~v 384 (402)
++.+++..+..+.+.|+++.|+.++.+..+ +.++..|+++|+||+..++ +. ...+++.|+++.|+++|.+++ +.+
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 999888888999999999999999987423 7999999999999997533 23 334778999999999999875 799
Q ss_pred HHHHHHHHHHhhcCC
Q 015687 385 KKEAAWAISNATSGG 399 (402)
Q Consensus 385 ~~~a~~aL~nl~~~~ 399 (402)
+++|+|+|+|++.+.
T Consensus 370 ~~~a~~~L~nLa~~~ 384 (644)
T 2z6h_A 370 IKATVGLIRNLALCP 384 (644)
T ss_dssp HHHHHHHHHHHTTSG
T ss_pred HHHHHHHHHHHccCH
Confidence 999999999998753
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=259.68 Aligned_cols=322 Identities=16% Similarity=0.163 Sum_probs=278.0
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
+.++.|++.|.++ ++..+..|+.+|+++.. . ..+...+.+.|+++.|+++|++++ +.++..|+++|.+|+...+..
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~-~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSH-H-REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-S-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-C-chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 4688999999854 89999999999999754 3 355677888999999999999988 999999999999999987888
Q ss_pred hHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
+..+.+.|+++.|+.+|.+++..++..++.+|.+++..+++.+..+.+.|+++.|+.++...........++.+|.+|+.
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 88898999999999999999999999999999999988888899999999999999999666666677889999999997
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~n 309 (402)
...........++++.|+.++.+.++.++..++|+|.+++...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6433333344789999999999999999999999999999765421 1124688999999999999999999999999
Q ss_pred hhcCChHHHHHHHhCCChHHHHHHhcCCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHcCCHHHHHHHhccCCH-HH
Q 015687 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISNITAGNVN---QIQAIIEAGIIGPLVNLLLNAEF-EI 384 (402)
Q Consensus 310 l~~~~~~~~~~i~~~~~l~~L~~ll~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~~-~v 384 (402)
++.+++.....+.+.|+++.|+.+|.+..+ +.++..|+|+|+||+..+++ ....+.+.|+++.|+.+|.+++. .+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v 505 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence 999988889999999999999999976313 48999999999999975433 23467789999999999998774 99
Q ss_pred HHHHHHHHHHhhcC
Q 015687 385 KKEAAWAISNATSG 398 (402)
Q Consensus 385 ~~~a~~aL~nl~~~ 398 (402)
+++|+|+|+|++.+
T Consensus 506 ~~~A~~aL~nLa~~ 519 (780)
T 2z6g_A 506 IKATVGLIRNLALC 519 (780)
T ss_dssp HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999864
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=226.52 Aligned_cols=239 Identities=35% Similarity=0.556 Sum_probs=220.2
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhH
Q 015687 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (402)
Q Consensus 114 g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (402)
...+.++..|.+++ ++++..|+++|.++.+.+++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 35899999999998 89999999999887766678888999999999999999999999999999999999998888999
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCC-chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCC
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~ 272 (402)
.+.+.|+++.|+.++ .++++.++..++|+|.+++.+.+.. ......+++|.|+.+|.++++.++..++|+|++++...
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6678999999999999999886443 34445789999999999999999999999999999988
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 015687 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352 (402)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n 352 (402)
++....+.+.|+++.|+.+|.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.++..|+|+|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999998998999999999999999999998 99999999999999
Q ss_pred Hhc
Q 015687 353 ITA 355 (402)
Q Consensus 353 l~~ 355 (402)
|+.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 975
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-30 Score=223.42 Aligned_cols=239 Identities=35% Similarity=0.515 Sum_probs=218.5
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC-CCc
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPL 235 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~ 235 (402)
..++.++..|.+++++++..|+++|.++....+..+..+.+.|+++.|+.++ .++++.++..++|+|.+++.+.+ ...
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4689999999999999999999999887665666788899999999999999 66779999999999999998653 233
Q ss_pred hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 015687 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 236 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~ 315 (402)
.....+++|.|+.+|.++++.++..++++|++++...+.....+.+.|+++.|+.+|.++++.++..|+++|++++.+++
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 33347899999999999999999999999999999888776889999999999999999999999999999999999998
Q ss_pred HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 316 ~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
.....+.+.|++|.|+.++.++ ++.++..|+|+|+|++.++++....+++.|+++.|+.++.+++++++..|+|+|.|+
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888899999999999999998 999999999999999998899999999999999999999999999999999999999
Q ss_pred hc
Q 015687 396 TS 397 (402)
Q Consensus 396 ~~ 397 (402)
+.
T Consensus 250 ~~ 251 (252)
T 4db8_A 250 QS 251 (252)
T ss_dssp C-
T ss_pred hc
Confidence 85
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-29 Score=217.40 Aligned_cols=241 Identities=29% Similarity=0.465 Sum_probs=217.5
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+.++.+++.|++++++.+..|++.|.++.+.. ......+++.|+++.|+++|.+++ +.++..|+++|++++.++++.+
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHH
Confidence 56899999999999999999999999997654 346778899999999999999988 9999999999999999889999
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
..+.+.|+++.|+.++.+++++++..|+++|++++...+..+..+.+.|+++.|+.++
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l---------------------- 137 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL---------------------- 137 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT----------------------
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH----------------------
Confidence 9999999999999999999999999999999999988777777777777777777766
Q ss_pred CCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
.++++.++..++++|++++...+...+.+.+.|+++.|+.++.++++.++..|+++|+++
T Consensus 138 --------------------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 197 (252)
T 4hxt_A 138 --------------------TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197 (252)
T ss_dssp --------------------TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred --------------------cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 235677888888888888877777777888999999999999999999999999999999
Q ss_pred hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 015687 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (402)
Q Consensus 311 ~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 356 (402)
+.+++.....+.+.|+++.|+.++.++ ++.+++.|+|+|+|++..
T Consensus 198 ~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 198 ASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALENIKSG 242 (252)
T ss_dssp TTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHHHHcC
Confidence 998888899999999999999999988 999999999999999974
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-26 Score=220.07 Aligned_cols=320 Identities=11% Similarity=0.136 Sum_probs=256.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHh-hcCcHHHHHHhhcC-CCCHHHHHHHHHHHHHhhcCCCc--
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASGTSE-- 148 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~i~~L~~lL~~-~~~~~~~~~a~~~L~~l~~~~~~-- 148 (402)
.+.+.+.|.+++.+.+..|+..|..+ +.. ......+. +.|+++.|+++++. .+ ..+.+.++.+|.|++...+.
T Consensus 336 a~~~~~~L~~~~~~~~~~AvEgLaYL-Sl~-~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~~~ 412 (778)
T 3opb_A 336 SEIFINAISRRIVPKVEMSVEALAYL-SLK-ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEEXX 412 (778)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHH-TTS-SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHH-hCC-HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCcccc
Confidence 46677788887777799999999998 432 33333444 56789999999996 45 78999999999999975431
Q ss_pred ------------------------------------chHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh
Q 015687 149 ------------------------------------NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (402)
Q Consensus 149 ------------------------------------~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (402)
.+..+.+.|++|.|+.++.++++.+++.++|+|+||+.+ +..|
T Consensus 413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R 491 (778)
T 3opb_A 413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFI 491 (778)
T ss_dssp CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGH
T ss_pred hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHH
Confidence 345678899999999999999999999999999999977 5689
Q ss_pred HHHHhcCChHHHHHHhccchhh--HHHHHHHHHHHHhhhCC-CCCchh--hhhchHHHHHHhccC-CCh-----------
Q 015687 193 DLVLSNGALMPLLAQFNEHAKL--SMLRNATWTLSNFCRGK-PQPLFE--QTRPALPALERLIHS-NDD----------- 255 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~--~~~~~a~~~L~~l~~~~-~~~~~~--~~~~~l~~L~~lL~~-~~~----------- 255 (402)
..+.++|++++|+.++....+. ..+..|+.+|.+++... |...+. ...+++|.|+.+|.. ++.
T Consensus 492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 9999999999999999655433 37899999999999653 221111 113899999999983 211
Q ss_pred --hHHHHHHHHHHHhccCCh----HHHHHHHHh-CcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC----
Q 015687 256 --EVLTDACWALSYLSDGTN----DKIQAVIEA-GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH---- 324 (402)
Q Consensus 256 --~v~~~a~~~l~~l~~~~~----~~~~~~~~~-~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~---- 324 (402)
--...|+.+|.||+..++ +....++.. |+++.|..+|.+++..++..|+++++|++.+.....+.+.+.
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~ 651 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ 651 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence 126799999999998762 334567774 999999999999999999999999999998554221334332
Q ss_pred --CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHhcc--CCHHHHHHHHHHHHHhhc
Q 015687 325 --QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA-GIIGPLVNLLLN--AEFEIKKEAAWAISNATS 397 (402)
Q Consensus 325 --~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~ 397 (402)
+.++.|+.++.++ +..+|+.|+|+|+|++.+++...+.+++. ++++.++.++.+ ++++++..++.++.|++.
T Consensus 652 ~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 652 SLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 2388999999988 99999999999999988778888888875 799999999999 899999999999999996
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=189.88 Aligned_cols=200 Identities=36% Similarity=0.530 Sum_probs=181.4
Q ss_pred hcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCC-chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHH
Q 015687 197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 275 (402)
Q Consensus 197 ~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~ 275 (402)
..|..+.|+.++ .++++.++..++|+|.+++...+.. ......+++|.|+.+|.+++++++..++++|++++.+.++.
T Consensus 10 ~~~~~~~l~~LL-~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQL-NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 456888999999 7889999999999999999775322 23344689999999999999999999999999999888888
Q ss_pred HHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 276 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 276 ~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
...+++.|+++.|+.+|.++++.++..|+++|+|++.+++.....+++.|+++.|+.++.++ ++.++..|+|+|+|++.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 88899999999999999999999999999999999999998888899999999999999998 99999999999999999
Q ss_pred CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 356 GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 356 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
++++....+.+.|+++.|+.++.++++++++.|+++|.+++.+
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999863
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-25 Score=187.99 Aligned_cols=199 Identities=33% Similarity=0.526 Sum_probs=181.2
Q ss_pred hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 015687 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191 (402)
Q Consensus 112 ~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 191 (402)
..|..+.|+.+|++++ +.++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+++|+|++.+.+..
T Consensus 10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 4678999999999988 999999999999999888899999999999999999999999999999999999999888888
Q ss_pred hHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCC-chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhcc
Q 015687 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270 (402)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~ 270 (402)
+..+.+.|+++.|+.++ .++++.++..++|+|.+++.+.+.. ......+++|.|+.++.+++++++..++++|.+++.
T Consensus 89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999 7778999999999999999865322 223347899999999999999999999999999999
Q ss_pred CChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 271 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 271 ~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
.+++....+.+.|+++.|+.++.++++.++..|+++|++++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 878888889999999999999999999999999999999975
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.6e-25 Score=193.53 Aligned_cols=226 Identities=17% Similarity=0.147 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHH
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 207 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~ 207 (402)
.+-+..|+..|.+++.. .++...+.+.|++|.|+. +|.++++.+++.|+|+|+|++.+++.+++.+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 46788999999999985 668888899999999999 9999999999999999999999999999999999999999999
Q ss_pred hccchhhHHHHHHHHHHHHhhhCCCCCc-hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 015687 208 FNEHAKLSMLRNATWTLSNFCRGKPQPL-FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 286 (402)
Q Consensus 208 l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 286 (402)
|..+++..+++.++|+|++++++.+... .....+++|.|+.+|++++..++..++|+|++++.++++.++.+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 9555678999999999999999864322 233368999999999999999999999999999988888889999999999
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC--CC---hHHHHHHhcCCC-chhHHHHHHHHHHHHhc
Q 015687 287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--QA---LPCLLDLLTQNY-KKSIKKEACWTISNITA 355 (402)
Q Consensus 287 ~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~--~~---l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~ 355 (402)
.|+.+|.+++..+++.|+++|++++.+.+......-.. .+ +..-..-+++.+ ..++.+.+..++-++..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999865433322211 11 112233333221 24556666666665553
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-24 Score=189.76 Aligned_cols=187 Identities=14% Similarity=0.179 Sum_probs=168.7
Q ss_pred hhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHH-hccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 015687 212 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER-LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 290 (402)
Q Consensus 212 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ 290 (402)
.+.+-+..|+..|.+++...+........|++|.++. +|.++++.++..|+|+|++++.+++...+.+++.|+++.|+.
T Consensus 52 ~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 52 ADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 3456678888999999876433332334688999999 999999999999999999999988888888999999999999
Q ss_pred hcCC-CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 015687 291 LLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 369 (402)
Q Consensus 291 ~L~~-~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 369 (402)
+|.+ ++..++..|+|+|+|++.+++...+.+.+.|++|.|+.+|.++ ++.++..|+|+|+|++.++++.+..+++.|+
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~ 210 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 210 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 9985 4789999999999999999988888899999999999999998 9999999999999999988999999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 370 IGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 370 i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
++.|+.+|.+++++++..|+++|+||+.++
T Consensus 211 i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 211 VQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999874
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-23 Score=176.99 Aligned_cols=197 Identities=19% Similarity=0.141 Sum_probs=171.4
Q ss_pred cHHHHHHhhcCCCCH--HHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh
Q 015687 115 VVPRFIEFLSRDDFP--QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (402)
.+|.|+++|.+++ + +++..|+++|.+++.++++++..+++.|+||.|+++|.++++++++.|+|+|.||+.++++.+
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 4899999999988 6 899999999999998888999999999999999999999999999999999999999888899
Q ss_pred HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhcc----------------CCChh
Q 015687 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------------SNDDE 256 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~----------------~~~~~ 256 (402)
..+.+.|++++|+.+|..+.+.++++.++.+|+||+..... ......+++|.|+.++. ..+++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~-k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL-KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG-HHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh-HHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999995567889999999999999977433 33444678999988763 13679
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC------CChhhHHHHHHHHHHhhcC
Q 015687 257 VLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 257 v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~~L~~------~~~~v~~~a~~~l~nl~~~ 313 (402)
+++++..+|.||+..+++..+.+.+. |+++.|+.+++. .+.+.++.|+.+|.|++..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998776677778776 778999999853 3567899999999999864
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.6e-22 Score=192.20 Aligned_cols=314 Identities=15% Similarity=0.129 Sum_probs=243.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.++.|.+.+++ ...+..|+..|+++.+..+... ..+. ...+.+.++|.+++ .+-+..|++.|..++.+ ++.+.
T Consensus 297 ~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~-~si~--~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl~-~~VKe 369 (778)
T 3opb_A 297 YLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTC-INLK--QLSEIFINAISRRI-VPKVEMSVEALAYLSLK-ASVKI 369 (778)
T ss_dssp HHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTT-CCHH--HHHHHHHHHTTTCC-HHHHHHHHHHHHHHTTS-SHHHH
T ss_pred HHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCc-CcHH--HHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCC-HHHHH
Confidence 34666666654 4678889999999876542221 1122 26788889998876 56699999999999886 77777
Q ss_pred HHHhC-CchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch--------------------------------------h
Q 015687 152 VVIDH-GAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK--------------------------------------C 191 (402)
Q Consensus 152 ~~~~~-g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~--------------------------------------~ 191 (402)
.+.+. |+++.|+.++++ .+..+...++.+|.|++.+.+. .
T Consensus 370 ~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~ 449 (778)
T 3opb_A 370 MIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFN 449 (778)
T ss_dssp HHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHH
Confidence 77765 669999999995 7788899999999999864431 3
Q ss_pred hHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChh---HHHHHHHHHHHh
Q 015687 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDE---VLTDACWALSYL 268 (402)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~---v~~~a~~~l~~l 268 (402)
+..+.+.|+++.|+.++ .+.++.++..++|+|.+|+..........-.|+++.|+++|.+.... .+..|+.+|+++
T Consensus 450 ~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 450 EKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp HHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 45678899999999999 77889999999999999997754444555589999999999877544 899999999999
Q ss_pred ccCChHHHHHHHH----hCcHHHHHHhcCC-CCh-------------hhHHHHHHHHHHhhcCCh----HHHHHHHhC-C
Q 015687 269 SDGTNDKIQAVIE----AGVCPRLVELLRH-PSP-------------SVLIPALRTVGNIVTGDD----MQTQCIINH-Q 325 (402)
Q Consensus 269 ~~~~~~~~~~~~~----~~~i~~L~~~L~~-~~~-------------~v~~~a~~~l~nl~~~~~----~~~~~i~~~-~ 325 (402)
+...+... ++. .|++++|+.+|.. +.. --+.+|+.+|+|++..++ +....++.. |
T Consensus 529 lis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g 606 (778)
T 3opb_A 529 LIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV 606 (778)
T ss_dssp HHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred HhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence 85443221 221 3899999999983 221 126789999999999862 345668885 9
Q ss_pred ChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHH-HHHHHc------CCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI-QAIIEA------GIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 326 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~------~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
++|.|..+|.++ ++.+|+.|+|+++|++.+ ++.+ +.+.+. +.++.|+.++..+|.++|.+|+|+|+|+++
T Consensus 607 a~~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 607 YWSTIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 999999999988 899999999999999984 5544 344322 237899999999999999999999999974
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-22 Score=170.93 Aligned_cols=196 Identities=18% Similarity=0.185 Sum_probs=165.5
Q ss_pred cHHHHHHhhcCCCH--HHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 72 SLPAMVAGVWSDDR--NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 72 ~i~~l~~~l~s~~~--~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
.+|.+++.|+++++ +.+..|+..++++.... +++...+++.|++|.|+++|.+++ +++|..|+|+|+||+.+++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 68999999999988 88999999999986543 567778999999999999999988 999999999999999988999
Q ss_pred hHHHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc---------------chh
Q 015687 150 TRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---------------HAK 213 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~---------------~~~ 213 (402)
+..+.+.|+||.|+.+|. +++.+++++|+.+|+||+.... ++..+.+. ++++|+.++.. ..+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence 999999999999999998 5799999999999999997654 57777764 69999886520 126
Q ss_pred hHHHHHHHHHHHHhhhCCC-CCchhh-hhchHHHHHHhccC------CChhHHHHHHHHHHHhccC
Q 015687 214 LSMLRNATWTLSNFCRGKP-QPLFEQ-TRPALPALERLIHS------NDDEVLTDACWALSYLSDG 271 (402)
Q Consensus 214 ~~~~~~a~~~L~~l~~~~~-~~~~~~-~~~~l~~L~~lL~~------~~~~v~~~a~~~l~~l~~~ 271 (402)
+.++.+++++|.||+...+ ...... ..|+++.|+.+++. .+...+++++.+|.||+..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 6899999999999998752 222222 25789999999965 2668899999999999864
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.1e-19 Score=180.08 Aligned_cols=316 Identities=16% Similarity=0.186 Sum_probs=228.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhH-H---hhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCC
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINE-V---IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~-~---~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~ 147 (402)
-++.+++.+.++++..+..++.+|..++... .+.... . .-..+++.|++++.+++ +.++..|+++|.++....+
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~-~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDS-AEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH-TTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-HHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccc
Confidence 4788888999999999999999999886532 121111 0 01236788888888877 8999999999998886543
Q ss_pred cchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 148 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 148 ~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
......+ .++++.+..++.++++.++..++++|++++...+..-...+. ++++.++..+ .+.++.++..+++++..+
T Consensus 207 ~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~-~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 207 QALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRT-QDQDENVALEACEFWLTL 283 (852)
T ss_dssp HHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHc-cCCcHHHHHHHHHHHHHH
Confidence 2211111 257888999999999999999999999999766543111111 3566777777 667889999999999999
Q ss_pred hhCCCCCc--hhhhhchHHHHHHhcc-----------C-----------CChhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 015687 228 CRGKPQPL--FEQTRPALPALERLIH-----------S-----------NDDEVLTDACWALSYLSDGTNDKIQAVIEAG 283 (402)
Q Consensus 228 ~~~~~~~~--~~~~~~~l~~L~~lL~-----------~-----------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 283 (402)
+....... ......++|.++..+. + .+..++..+..++..++....+. ++ ..
T Consensus 284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~ 359 (852)
T 4fdd_A 284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PH 359 (852)
T ss_dssp TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HH
Confidence 97631111 1233567777777772 2 12246888888888887543221 11 23
Q ss_pred cHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 015687 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA 363 (402)
Q Consensus 284 ~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 363 (402)
+++.+...+.++++.+|..|++++|+++.+........+ .+++|.++..+.++ ++.||..|+|++++++...+.....
T Consensus 360 l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~ 437 (852)
T 4fdd_A 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPD 437 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHH
Confidence 577888888999999999999999999998875444322 37889999999988 9999999999999998632221111
Q ss_pred HHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 364 IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 364 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
..-.++++.|+..+.++++.++..|+++|.+++.+
T Consensus 438 ~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 11234788999999999999999999999999864
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-16 Score=148.91 Aligned_cols=322 Identities=16% Similarity=0.129 Sum_probs=249.4
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhcCCCc
Q 015687 71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTSE 148 (402)
Q Consensus 71 ~~i~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~~~~~~a~~~L~~l~~~~~~ 148 (402)
+.|+.|+..+.+. -.+-+..|+..|+.+.. + ....+-.++++.|+..|+.+ ++.++...++.+|.++....++
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk----~-y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSK----K-YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT----T-TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHH----H-hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 5688999999864 57899999999999842 1 22333455799999999764 3478888899999887764332
Q ss_pred -----------------chHHH-HhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-hhHHHHhc-CChHHHHHHh
Q 015687 149 -----------------NTRVV-IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSN-GALMPLLAQF 208 (402)
Q Consensus 149 -----------------~~~~~-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~-g~i~~L~~~l 208 (402)
+++.+ -+.+.|+.|+.+|++.+..+|..++.+|..|+...+. .++.++.. ++++.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 12233 3457899999999999999999999999999988876 77777744 9999999999
Q ss_pred ccchhhHHHHHHHHHHHHhhhCCCCCchhh-hhchHHHHHHhccCCC----hhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 015687 209 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQ-TRPALPALERLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAG 283 (402)
Q Consensus 209 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~l~~L~~lL~~~~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 283 (402)
.+....++..++..|.+|+.+++..+... ..++++.|+.++..+. ..+..+++.++.+|...+......+.+.|
T Consensus 176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 66778899999999999999975544443 3699999999997654 47889999999999999887778899999
Q ss_pred cHHHHHHhcCCCChh------hHH---HHHHHHHHhhcCC------hHHHHHHHhCCChHHHHHHhcCCC-chhHHHHHH
Q 015687 284 VCPRLVELLRHPSPS------VLI---PALRTVGNIVTGD------DMQTQCIINHQALPCLLDLLTQNY-KKSIKKEAC 347 (402)
Q Consensus 284 ~i~~L~~~L~~~~~~------v~~---~a~~~l~nl~~~~------~~~~~~i~~~~~l~~L~~ll~~~~-~~~v~~~a~ 347 (402)
+++.|..+|..+.+. ... .++.++.-++..+ ......+.+.|+++.|++++.++. ...++.+|.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 999999999754321 222 3667777777652 234566789999999999987542 457999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcC---------CHHHHHHHhcc-CCHHHHHHHHHHHHHhhcC
Q 015687 348 WTISNITAGNVNQIQAIIEAG---------IIGPLVNLLLN-AEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 348 ~~L~nl~~~~~~~~~~l~~~~---------~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~ 398 (402)
.+++.+..+++.....+.+.. ++..|+.++.+ ...++|.+|+.++..+..+
T Consensus 335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~ 395 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK 395 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC
Confidence 999999999988777776532 33444444544 4589999999999888754
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.1e-17 Score=142.83 Aligned_cols=229 Identities=14% Similarity=0.145 Sum_probs=175.3
Q ss_pred hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 015687 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191 (402)
Q Consensus 112 ~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 191 (402)
..+.++.|+..|.+++ +.++..|+++|+++.. .++++.|+.++.++++.++..|+++|+.+.......
T Consensus 21 ~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHN-SLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 4567899999999887 8999999999998863 246889999999999999999999999986433221
Q ss_pred hHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC
Q 015687 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (402)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 271 (402)
. . .++.+...+..++++.++..++++|..+....+ .....+++.|..++.++++.++..++++|+++..
T Consensus 89 ~-~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~- 157 (280)
T 1oyz_A 89 D-N-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND- 157 (280)
T ss_dssp H-H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred h-H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence 1 1 223333333367788999999999999986432 1234678889999999999999999999988753
Q ss_pred ChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 015687 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (402)
Q Consensus 272 ~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 351 (402)
.+.++.|+.++.++++.++..|+++|+.+....+ .+++.|..++.++ ++.+|..|+++|+
T Consensus 158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGLS 217 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 2468889999999999999999999999854333 3467888888888 8899999999999
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 352 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 352 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
++.. ...++.|+..+.+++ ++..|+++|+.+.
T Consensus 218 ~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 218 YRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELG 249 (280)
T ss_dssp HTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHC
T ss_pred HhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence 8852 236777777776543 7778888887764
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-16 Score=140.23 Aligned_cols=255 Identities=15% Similarity=0.123 Sum_probs=202.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
..++.+++.|.++++..+..|+..|..+.. .+.++.|+.++.+++ +.++..|+++|+.+... +...
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~-~~~~ 88 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKIC-KKCE 88 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCC-TTTH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccc-cccc
Confidence 478999999999999999999999998841 235889999999988 89999999999998753 2211
Q ss_pred HHHHhCCchHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 151 RVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 151 ~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
. .+++.|.. +++++++.++..++++|+++....+... ...++.|+..+ .++++.++..++++|.++..
T Consensus 89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITA-FDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence 1 13445543 5678999999999999999975433221 12577888888 78899999999999998764
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~n 309 (402)
. ..+|.|..++.++++.++..++++|+.+....+ .+++.|+..+.++++.++..|+++|++
T Consensus 158 ~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 K----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2 478999999999999999999999999854333 246789999999999999999999999
Q ss_pred hhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHH
Q 015687 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEA 388 (402)
Q Consensus 310 l~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a 388 (402)
+.. ...++.|...+.++ + ++..++++|+.+.. + .++|.|..++.+ .++++...+
T Consensus 219 ~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~--~---------~~~~~L~~~l~~~~~~~~~~~~ 273 (280)
T 1oyz_A 219 RKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIITSA 273 (280)
T ss_dssp TTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHHHH
T ss_pred hCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc--h---------hhhHHHHHHHhcCCCcHHHHHH
Confidence 862 35788999999765 3 89999999999853 2 478899999965 567888888
Q ss_pred HHHHHH
Q 015687 389 AWAISN 394 (402)
Q Consensus 389 ~~aL~n 394 (402)
..+|.+
T Consensus 274 ~~~l~~ 279 (280)
T 1oyz_A 274 IDKLKR 279 (280)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 887754
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-17 Score=166.55 Aligned_cols=309 Identities=14% Similarity=0.169 Sum_probs=231.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 153 (402)
+.+++.+.++++.++..++.++..++..+ .+ .. -.++++.|++.+.+++ +.++..++.+|+.++...+.....-
T Consensus 93 ~~ll~~l~~~~~~vr~~~a~~i~~ia~~~-~~--~~--wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~ 166 (852)
T 4fdd_A 93 SECLNNIGDSSPLIRATVGILITTIASKG-EL--QN--WPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSD 166 (852)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHHHT-TT--TT--CTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhc-Cc--cc--cHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhchh
Confidence 56777888888999999999999998754 11 11 2457999999999988 8999999999999987544332110
Q ss_pred H----hCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 154 I----DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 154 ~----~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
. -.++++.|++++.++++.+|..|+++|++++...+..-... -.++++.++..+ .++++.++..++++|..++.
T Consensus 167 ~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~ 244 (852)
T 4fdd_A 167 VLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALA-GDEEPEVRKNVCRALVMLLE 244 (852)
T ss_dssp SSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHH
Confidence 0 12467888888999999999999999999886544211000 113566777766 67788999999999999998
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhc-----------CC-
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL-----------RH- 294 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~~L-----------~~- 294 (402)
..+..-.....++++.+...+.+.++.++..+++.+..++..... ...+.. .+++.++..+ .+
T Consensus 245 ~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~ 322 (852)
T 4fdd_A 245 VRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV 322 (852)
T ss_dssp HCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred hCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCc
Confidence 764333344567888899999999999999999999999865421 112221 3456666666 23
Q ss_pred ----------CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 015687 295 ----------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 364 (402)
Q Consensus 295 ----------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 364 (402)
.++.++..|..+++.++...++. ++. .++|.+...+.++ ++.+|..|++++++++.+..+.....
T Consensus 323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~ 397 (852)
T 4fdd_A 323 EGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPY 397 (852)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGG
T ss_pred ccccccccccccchHHHHHHHHHHHHHHhccHH---HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 34567899999999998643321 222 4678888888888 99999999999999999877766554
Q ss_pred HHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 365 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 365 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
+ .++++.++..+.++++.||..|+|+|++++..
T Consensus 398 l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 398 L-PELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred H-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4 34899999999999999999999999998863
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-15 Score=143.14 Aligned_cols=326 Identities=14% Similarity=0.184 Sum_probs=242.2
Q ss_pred ccHHHHHHhhcC--CCHHHHHHHHHHHHHHhccCCCC----------------chhHHh-hcCcHHHHHHhhcCCCCHHH
Q 015687 71 ESLPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSP----------------PINEVI-QSGVVPRFIEFLSRDDFPQL 131 (402)
Q Consensus 71 ~~i~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~----------------~~~~~~-~~g~i~~L~~lL~~~~~~~~ 131 (402)
.+++.++..|+. +|.+....++..|..+++.+..+ ..+.++ +.+.++.|+.+|++.+ -.+
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v 138 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV 138 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence 478999999986 57888889999999887754221 112333 5678999999999988 899
Q ss_pred HHHHHHHHHHhhcCCCc-chHHHHh-CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc
Q 015687 132 QFEAAWALTNIASGTSE-NTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN 209 (402)
Q Consensus 132 ~~~a~~~L~~l~~~~~~-~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~ 209 (402)
+..++.+|..++...++ ..+.+.. .++++.|+.+|++....+|..++..|.+|+.++++.++.+.-.|+++.|+.++.
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999987777 6676775 499999999999999999999999999999999999999999999999999994
Q ss_pred cch---hhHHHHHHHHHHHHhhhCCCCCc-hhhhhchHHHHHHhccCCChh------HHHH---HHHHHHHhccCC----
Q 015687 210 EHA---KLSMLRNATWTLSNFCRGKPQPL-FEQTRPALPALERLIHSNDDE------VLTD---ACWALSYLSDGT---- 272 (402)
Q Consensus 210 ~~~---~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~------v~~~---a~~~l~~l~~~~---- 272 (402)
... ...+...++.++.||.+.++..+ .....+++|.|.++|..+++. ...+ ++.++.-++..+
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 332 23688999999999999974333 334478999999999754322 3333 555565555432
Q ss_pred --hHHHHHHHHhCcHHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHhCC---------ChHHHHHHhcCCCc
Q 015687 273 --NDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQ---------ALPCLLDLLTQNYK 339 (402)
Q Consensus 273 --~~~~~~~~~~~~i~~L~~~L~~~--~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~---------~l~~L~~ll~~~~~ 339 (402)
......+.+.|+++.|+.++... ...++..|+.+++.++.+++.....+.+.. ++..|+.++.+...
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 13345678899999999998765 568999999999999999987777666532 33334444655546
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHc----------CCH---HHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 340 KSIKKEACWTISNITAGNVNQIQAIIEA----------GII---GPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 340 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~i---~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
..+|..|+.++..+..++++....++.. +.+ ..|...+-+.|+--.--|+.++..+..
T Consensus 379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~ 449 (651)
T 3grl_A 379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQ 449 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHc
Confidence 7899999999999999887655555543 001 123444444555333336666665554
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-15 Score=148.64 Aligned_cols=305 Identities=13% Similarity=0.099 Sum_probs=227.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.++.+++.++.+++.++..|+..+..+...-............++|.+..++++++ +.++..++++|+.++..-.. .
T Consensus 282 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~-~~vR~~a~~~l~~l~~~~~~--~ 358 (588)
T 1b3u_A 282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILGK--D 358 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHCH--H
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhH--h
Confidence 35677778888888899889888888876432211111223457889999998888 89999999999998753221 1
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.....++|.+..++.+++++++..++.+++.++..... . ......++.+..++ .+.+..++..++.++..++...
T Consensus 359 -~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~-~~~~~~lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~ 433 (588)
T 1b3u_A 359 -NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--R-QLSQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQL 433 (588)
T ss_dssp -HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--H-HHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH--H-HHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHc
Confidence 11234789999999999999999999999988754321 1 12233677777777 6678889999999999998653
Q ss_pred CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 015687 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~ 311 (402)
+.. .....++|.+..++.+++..++..++.+++.++...... .....+++.+..++.++++.+|..++.+++.++
T Consensus 434 ~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~ 508 (588)
T 1b3u_A 434 GVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS 508 (588)
T ss_dssp CGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred CHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 221 122467899999999999999999999999987542221 123457888888888889999999999999998
Q ss_pred cCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 015687 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 390 (402)
Q Consensus 312 ~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 390 (402)
..... ......++|.+...+.++ ++.+|..++++++.++.. .++. ....++|.|..++.+.+.++|..|++
T Consensus 509 ~~~~~---~~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~----~~~~~~p~l~~l~~d~d~~vr~~a~~ 580 (588)
T 1b3u_A 509 EVCGQ---DITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPILDNST----LQSEVKPILEKLTQDQDVDVKYFAQE 580 (588)
T ss_dssp HHHHH---HHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSCHHH----HHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HhcCH---HHHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHhchhh----hHHHHHHHHHHHcCCCchhHHHHHHH
Confidence 64221 123347899999999988 899999999999999963 2322 22347788888888999999999999
Q ss_pred HHHHhhc
Q 015687 391 AISNATS 397 (402)
Q Consensus 391 aL~nl~~ 397 (402)
++..+..
T Consensus 581 al~~l~~ 587 (588)
T 1b3u_A 581 ALTVLSL 587 (588)
T ss_dssp HHHHTTC
T ss_pred HHHHhhc
Confidence 9998754
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=149.74 Aligned_cols=304 Identities=12% Similarity=0.109 Sum_probs=222.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc-hH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN-TR 151 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~-~~ 151 (402)
+|.+.+.+.++++.++..++..|..+...-. .......+++.+++++++++ +.++..|+++|+.++...+.. ..
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~ 318 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVG----PEITKTDLVPAFQNLMKDCE-AEVRAAASHKVKEFCENLSADCRE 318 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC----HHHHHHTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhC----cccchhHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHhChhhhh
Confidence 4445555566667777777777776654210 11223457889999998887 899999999999998754322 11
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
...-..++|.+..++.++++.+|..++++|+.++..... ......+++.+...+ .+.++.++..++.++..++...
T Consensus 319 ~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~ 394 (588)
T 1b3u_A 319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQL-KDECPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHH-TCSCHHHHHHHHTTCHHHHHHS
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHHHHhc
Confidence 122336789999999999999999999999999743221 111223677888888 6678899999999999988753
Q ss_pred CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 015687 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~ 311 (402)
+ .......++|.+..++.+.+..++..++.++..++...... .....+++.+...+.++++.++..|+.+++.++
T Consensus 395 ~--~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 469 (588)
T 1b3u_A 395 G--IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLV 469 (588)
T ss_dssp C--HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 2 12234678899999999899999999999999887421110 111235788888999999999999999999998
Q ss_pred cCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHH
Q 015687 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 391 (402)
Q Consensus 312 ~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 391 (402)
...... .....++|.|..++.++ ++.+|..++++++.++...... . ....++|.|...+.++++.||..++++
T Consensus 470 ~~~~~~---~~~~~llp~l~~~~~~~-~~~~R~~a~~~l~~l~~~~~~~--~-~~~~~~~~l~~~l~d~~~~Vr~~a~~~ 542 (588)
T 1b3u_A 470 EKFGKE---WAHATIIPKVLAMSGDP-NYLHRMTTLFCINVLSEVCGQD--I-TTKHMLPTVLRMAGDPVANVRFNVAKS 542 (588)
T ss_dssp HHHCHH---HHHHHTHHHHHHTTTCS-CHHHHHHHHHHHHHHHHHHHHH--H-HHHHTHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHhCch---hHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHhhCCCCCchHHHHHHHH
Confidence 643221 12346788898888877 8999999999999998632221 1 233589999999999999999999999
Q ss_pred HHHhhc
Q 015687 392 ISNATS 397 (402)
Q Consensus 392 L~nl~~ 397 (402)
|+.++.
T Consensus 543 l~~l~~ 548 (588)
T 1b3u_A 543 LQKIGP 548 (588)
T ss_dssp HHHHGG
T ss_pred HHHHHH
Confidence 999875
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-14 Score=141.02 Aligned_cols=300 Identities=17% Similarity=0.151 Sum_probs=202.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.++.+.+.++++++..+..|+..+.++.. +... ..+++.+.+++.+++ +.++..|++++.++...+++..
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~----~~~~----~~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~- 156 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV----DKIT----EYLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMV- 156 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCS----GGGH----HHHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCH-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCh----HHHH----HHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhc-
Confidence 34566666777788888777777766631 1111 224677899999888 9999999999999998766643
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.+.+.++.|..+|.++++.++..|+++|+.++.+.+..+......+.+..|+..+ ...++-.+..++.++..++..
T Consensus 157 --~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~- 232 (591)
T 2vgl_B 157 --EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPK- 232 (591)
T ss_dssp --HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCC-
T ss_pred --ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCC-
Confidence 2347889999999999999999999999999988764311111122466677776 445666666677777666532
Q ss_pred CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHH
Q 015687 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~ 308 (402)
.......+++.+..++++.++.|+..|++++.++... +++..+.+. ..+.+.|+.++. +++.++..|+.+|+
T Consensus 233 ---~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~ 307 (591)
T 2vgl_B 233 ---DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNIN 307 (591)
T ss_dssp ---SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred ---ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence 2233467889999999999999999999999998742 233333332 345566776554 67888888888888
Q ss_pred HhhcCChH-----------------H-HHHHH-------hC----CChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015687 309 NIVTGDDM-----------------Q-TQCII-------NH----QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359 (402)
Q Consensus 309 nl~~~~~~-----------------~-~~~i~-------~~----~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 359 (402)
.++...+. . +...+ +. .+++.|..++.+. +..+|..+++++++++...+.
T Consensus 308 ~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~ 386 (591)
T 2vgl_B 308 LIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQ 386 (591)
T ss_dssp HHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChh
Confidence 88742111 0 01111 11 2455666777777 889999999999999986554
Q ss_pred HHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 360 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
.... +++.|++++.+....++.++..++.++.
T Consensus 387 ~~~~-----~v~~Ll~ll~~~~~~v~~e~i~~l~~ii 418 (591)
T 2vgl_B 387 SAER-----CVSTLLDLIQTKVNYVVQEAIVVIRDIF 418 (591)
T ss_dssp HHHH-----HHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 3322 3445555555555555555555555553
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=144.95 Aligned_cols=310 Identities=13% Similarity=0.097 Sum_probs=217.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCC--CCHHHHHHHHHHHHHhhcCC-Ccch
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD--DFPQLQFEAAWALTNIASGT-SENT 150 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~~~~~~a~~~L~~l~~~~-~~~~ 150 (402)
..+++.+.++++.. ..++.++..++... . +.. .-.++++.|++.+.++ + +.++..++.+|+.++... ++..
T Consensus 93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~-~-~~~--~w~~ll~~L~~~l~~~~~~-~~~r~~al~~l~~l~~~~~~~~~ 166 (462)
T 1ibr_B 93 NYVLQTLGTETYRP-SSASQCVAGIACAE-I-PVN--QWPELIPQLVANVTNPNST-EHMKESTLEAIGYICQDIDPEQL 166 (462)
T ss_dssp HHHHHHTTCCCSSS-CSHHHHHHHHHHHH-G-GGT--CCTTHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHHHHSCGGGT
T ss_pred HHHHHHhCCCCchh-hHHHHHHHHHHHHh-c-ccc--ccHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHhCCchhh
Confidence 34667777777666 67777777776542 1 111 1246899999999987 6 899999999999998743 2221
Q ss_pred HHHHhCCchHHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchhh-HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 151 RVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCR-DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~-~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
.... ..+++.+..++.++ +..+|..|+++++++.......- ......-+++.+...+ .+.+..++..++++|..+
T Consensus 167 ~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~vr~~~~~~l~~l 244 (462)
T 1ibr_B 167 QDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKI 244 (462)
T ss_dssp GGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred HhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHH
Confidence 2112 24788899999887 79999999999999764322110 0000111244444444 667889999999999999
Q ss_pred hhCCCCCchhhhh-chHHHHHHhccCCChhHHHHHHHHHHHhccCChH---------------------HHHHHHHhCcH
Q 015687 228 CRGKPQPLFEQTR-PALPALERLIHSNDDEVLTDACWALSYLSDGTND---------------------KIQAVIEAGVC 285 (402)
Q Consensus 228 ~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~---------------------~~~~~~~~~~i 285 (402)
+...+..-..... .+++.+...+.+.+++++..+++.+..++..... ...... ..++
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 323 (462)
T 1ibr_B 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLV 323 (462)
T ss_dssp HHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhcc
Confidence 9875432223445 7888888888889999999999998888753210 111011 2356
Q ss_pred HHHHHhcCC-------CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 015687 286 PRLVELLRH-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358 (402)
Q Consensus 286 ~~L~~~L~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 358 (402)
+.++..+.. .++.++..|+.+++.++....+ .++ ..++|.+...+.++ +..+|..|+++++.++.+..
T Consensus 324 p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~ 398 (462)
T 1ibr_B 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPE 398 (462)
T ss_dssp HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSC
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCc
Confidence 667777743 3467899999999999875442 122 25678888888888 99999999999999998643
Q ss_pred -HHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 359 -NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 359 -~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
+.+...+ ..++|.|+..+.++++.||..|+|+|++++..
T Consensus 399 ~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 399 PSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp TTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 3222222 45899999999999999999999999999864
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-14 Score=121.48 Aligned_cols=189 Identities=20% Similarity=0.229 Sum_probs=158.7
Q ss_pred CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCc
Q 015687 156 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235 (402)
Q Consensus 156 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 235 (402)
.+.++.|+.+|.++++.++..++++|+.+.. .+.++.|+..+ .++++.++..++++|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence 4679999999999999999999999998743 24688899999 67799999999999998863
Q ss_pred hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 015687 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 236 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~ 315 (402)
...++.|..+|.++++.++..++++|+.+.. .+.++.|+.++.++++.++..|+++|+++.. +
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~ 142 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--E 142 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--H
Confidence 3678999999999999999999999998863 2457889999999999999999999999843 2
Q ss_pred HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 316 ~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
..++.|..++.++ ++.+|..|+++|+.+.. ++ +++.|..++.++++.||..|..+|.++
T Consensus 143 ---------~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 143 ---------RAVEPLIKALKDE-DGWVRQSAADALGEIGG--ER---------VRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp ---------GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--HH---------HHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred ---------HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--hh---------HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 4678899999888 99999999999999943 22 577888899999999999999999998
Q ss_pred hcCCC
Q 015687 396 TSGGS 400 (402)
Q Consensus 396 ~~~~~ 400 (402)
...+.
T Consensus 202 ~~~~~ 206 (211)
T 3ltm_A 202 KSFNH 206 (211)
T ss_dssp -----
T ss_pred CCCCC
Confidence 87654
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-14 Score=141.11 Aligned_cols=297 Identities=18% Similarity=0.182 Sum_probs=221.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+.+..+.+.|++++...+..++..+..+...+ .+. ..+++.+++++.+++ ..++..+...+..++..+++..
T Consensus 13 ~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G-~d~------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~e~~ 84 (591)
T 2vgl_B 13 GEIFELKAELNNEKKEKRKEAVKKVIAAMTVG-KDV------SSLFPDVVNCMQTDN-LELKKLVYLYLMNYAKSQPDMA 84 (591)
T ss_dssp SHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTT-CCC------GGGHHHHHHTTSSSC-HHHHHHHHHHHHHHHHHSHHHH
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCC-CCh------HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccCchHH
Confidence 46788889999999888888877776665443 221 224677888998888 8999988888888876433321
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
. -+++.+.+-|.++++.+|..|+.+|+++. .++.... .++.+..++ .+.++.+++.|++++..++..
T Consensus 85 ---~--l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L-~d~~~~VRk~A~~al~~i~~~ 151 (591)
T 2vgl_B 85 ---I--MAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEY-----LCEPLRKCL-KDEDPYVRKTAAVCVAKLHDI 151 (591)
T ss_dssp ---H--TTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHH-----HHHHHHHHS-SCSCHHHHHHHHHHHHHHHHS
T ss_pred ---H--HHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHH-----HHHHHHHHc-CCCChHHHHHHHHHHHHHHhh
Confidence 1 35778888899999999999999999995 3332222 466788888 788999999999999999986
Q ss_pred CCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
.|.. ....+.++.+..+|.++|+.|+..|+++|..++...++....-...+.+..|+..+.+.++..+...+++++.+
T Consensus 152 ~p~~--~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l 229 (591)
T 2vgl_B 152 NAQM--VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY 229 (591)
T ss_dssp SCCC--HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred Chhh--cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Confidence 5432 22247889999999999999999999999999876542200001123456777777777888888999999999
Q ss_pred hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHHHHhccCCHHHHHH
Q 015687 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 387 (402)
Q Consensus 311 ~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 387 (402)
+..++.... .+++.+..++++. ++.|+.+|++++.++... +++..+.+.. .+.+.|+.++. +++.+|..
T Consensus 230 ~~~~~~~~~-----~~l~~l~~~l~~~-~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~-~d~~vr~~ 301 (591)
T 2vgl_B 230 NPKDDREAQ-----SICERVTPRLSHA-NSAVVLSAVKVLMKFLELLPKDSDYYNMLLK-KLAPPLVTLLS-GEPEVQYV 301 (591)
T ss_dssp CCCSHHHHH-----HHHHHHTTCSCSS-TTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH-HTHHHHHHHTT-SCHHHHHH
T ss_pred CCCChHHHH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHhhccCCCHHHHHHHHH-HHHHHHHHHhc-CCccHHHH
Confidence 876554433 4567888888888 999999999999999742 3444444443 36777776664 78899999
Q ss_pred HHHHHHHhhcC
Q 015687 388 AAWAISNATSG 398 (402)
Q Consensus 388 a~~aL~nl~~~ 398 (402)
|+.+|..++..
T Consensus 302 aL~~l~~i~~~ 312 (591)
T 2vgl_B 302 ALRNINLIVQK 312 (591)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988753
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.5e-14 Score=118.01 Aligned_cols=185 Identities=21% Similarity=0.241 Sum_probs=158.8
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 236 (402)
+..+.++.+|.++++.++..|+++|+.+.. .+.++.|+..+ .++++.++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 568899999999999999999999998753 23688899999 77899999999999988753
Q ss_pred hhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH
Q 015687 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316 (402)
Q Consensus 237 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~ 316 (402)
...++.|..+|.++++.++..++++|+.+.. ...++.|+.++.++++.++..|+++|+.+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 2678999999999999999999999998753 2357889999999999999999999999853
Q ss_pred HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 317 ~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
...++.|..++.++ ++.+|..|+++|+.+. .++ .++.|..++.++++.+|..|.++|.++.
T Consensus 137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 25688899999988 9999999999999993 333 5678888899999999999999999875
Q ss_pred c
Q 015687 397 S 397 (402)
Q Consensus 397 ~ 397 (402)
.
T Consensus 198 ~ 198 (201)
T 3ltj_A 198 S 198 (201)
T ss_dssp -
T ss_pred h
Confidence 3
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-14 Score=147.85 Aligned_cols=317 Identities=17% Similarity=0.224 Sum_probs=222.9
Q ss_pred cHHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhcCCCc
Q 015687 72 SLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSE 148 (402)
Q Consensus 72 ~i~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~l~~~~~~ 148 (402)
-++.+++.+.++ ++..+..++.++..++..- .+..-.-.-..+++.+.+.+.+++ +..++..|+.+++.++..-..
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc-CHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888 8999999999999987532 111101112346777888888762 379999999999998763221
Q ss_pred ch-HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 149 NT-RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 149 ~~-~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
.. .......+++.+..++.+++.+++..++.+|..++...+..-...+...+++.++..+ .+.++.++..+++++..+
T Consensus 208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHH
Confidence 11 0111113677788888888999999999999999865543322223335677777766 567788999999999888
Q ss_pred hhCC----------------C---CCch--hhhhchHHHHHHhccC-------CChhHHHHHHHHHHHhccCChHHHHHH
Q 015687 228 CRGK----------------P---QPLF--EQTRPALPALERLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAV 279 (402)
Q Consensus 228 ~~~~----------------~---~~~~--~~~~~~l~~L~~lL~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~ 279 (402)
+... | .... .....++|.++..+.. ++..++..+..++..++....+. +
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~ 363 (876)
T 1qgr_A 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I 363 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---G
T ss_pred HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---h
Confidence 7641 1 1111 1235677888887742 34678889999998887543221 1
Q ss_pred HHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 015687 280 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358 (402)
Q Consensus 280 ~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 358 (402)
+ ..+++.+...+.++++.++..|+++++.++.+.. +.....+ .+++|.++..+.++ ++.+|..|+|++++++...+
T Consensus 364 ~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCG
T ss_pred H-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCc
Confidence 1 2456777788888999999999999999998765 3333333 36899999999988 89999999999999997433
Q ss_pred HHH--HHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 359 NQI--QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 359 ~~~--~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
... ...+ ..+++.|+..+.++ +.++..|+|+|.+++..
T Consensus 441 ~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 441 EAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp GGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred hhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 211 1112 23678888888774 89999999999999854
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.59 E-value=8.2e-15 Score=139.24 Aligned_cols=278 Identities=17% Similarity=0.215 Sum_probs=195.9
Q ss_pred ccHHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhcCCC
Q 015687 71 ESLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTS 147 (402)
Q Consensus 71 ~~i~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~l~~~~~ 147 (402)
+.+|.+++.+.++ ++..+..++..|..+............. ..+++.++.++.++. ++.++..|+++++++.....
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3578889999988 9999999999999987532111111111 247888999998872 38999999999999765321
Q ss_pred cchH-HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHH
Q 015687 148 ENTR-VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (402)
Q Consensus 148 ~~~~-~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 226 (402)
+... .....-+++.+...+.+++..++..++++|..++...+..-...+..++++.++..+ .+.+..++..+++++..
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHH
Confidence 1110 011112467777788889999999999999999865443211111114566666666 66788899999999999
Q ss_pred hhhCC-------------------CCCch--hhhhchHHHHHHhccCC-------ChhHHHHHHHHHHHhccCChHHHHH
Q 015687 227 FCRGK-------------------PQPLF--EQTRPALPALERLIHSN-------DDEVLTDACWALSYLSDGTNDKIQA 278 (402)
Q Consensus 227 l~~~~-------------------~~~~~--~~~~~~l~~L~~lL~~~-------~~~v~~~a~~~l~~l~~~~~~~~~~ 278 (402)
++... ..... .....++|.++..+... +..++..++.+|..++....+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~--- 362 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD--- 362 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH---
Confidence 88652 11111 12356778787777432 3578999999999988543321
Q ss_pred HHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 015687 279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (402)
Q Consensus 279 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 356 (402)
++ ..+++.+...+.++++.++..|+.++|.++.+.. ......+ ..++|.++..+.++ ++.||..|+|+|++++..
T Consensus 363 ~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence 22 2467888888999999999999999999998654 2111112 47899999999998 899999999999999973
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.8e-14 Score=118.01 Aligned_cols=187 Identities=21% Similarity=0.220 Sum_probs=158.5
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh
Q 015687 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (402)
Q Consensus 113 ~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (402)
.+.++.|+++|.+++ +.++..|++.|+.+.. .++++.|+.++.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 456899999999888 9999999999998764 2579999999999999999999999999852
Q ss_pred HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCC
Q 015687 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~ 272 (402)
.+.++.|+..+ .++++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 23678888888 77889999999999998853 3578999999999999999999999999853
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 015687 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352 (402)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n 352 (402)
...++.|..++.++++.++..|+.+|+.+.. + ..++.|..+++++ ++.+|..|..+|.+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 2357889999999999999999999999843 2 3567888999888 99999999999999
Q ss_pred HhcC
Q 015687 353 ITAG 356 (402)
Q Consensus 353 l~~~ 356 (402)
+...
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 9764
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=5.1e-13 Score=131.22 Aligned_cols=337 Identities=18% Similarity=0.143 Sum_probs=227.2
Q ss_pred cCCCCchHHhhhhHHHHHHHHHHhhhHHHHhhhh-------ccccCCCCCcchhhhhhhhhccHHHHHHhhcCCCHHHHH
Q 015687 17 KVAVDAEEGRRRREDNMVEIRKNKREESLLKKRR-------EGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQL 89 (402)
Q Consensus 17 k~~~~~~~~r~~r~~~~~~lRk~~r~~~~~~kr~-------~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~ 89 (402)
++.++.+|.+++-.....+||+.-++.-..+|+. ..+...+.+ .....+++.+.+++...+.
T Consensus 20 r~~~~~~~e~~~i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~~-----------~~~~~vik~~~s~~~~~Kr 88 (618)
T 1w63_A 20 RTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAH-----------FGQLECLKLIASQKFTDKR 88 (618)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCCG-----------GGHHHHHHHHHSSSHHHHH
T ss_pred HcCCChHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCCc-----------chHHHHHHHHcCCchHHHH
Confidence 4455556666666666777877654432222221 111111110 3567888888999999888
Q ss_pred HHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCC
Q 015687 90 DATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP 169 (402)
Q Consensus 90 ~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~ 169 (402)
.+.-.+..++..+ + +.++ -+++.|.+-|.+++ +.++..|+++|+++.. ++ +.+ .+++.+..+|.++
T Consensus 89 l~Yl~~~~~~~~~--~--e~~~--l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~----~~~-~l~~~l~~~L~~~ 154 (618)
T 1w63_A 89 IGYLGAMLLLDER--Q--DVHL--LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SE----MCR-DLAGEVEKLLKTS 154 (618)
T ss_dssp HHHHHHHHHCCCC--H--HHHH--HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HH----HHH-HHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCC--c--HHHH--HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HH----HHH-HHHHHHHHHHcCC
Confidence 8888888876422 1 1111 14778888888888 8999999999999984 32 222 4688889999999
Q ss_pred CHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHh
Q 015687 170 TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 249 (402)
Q Consensus 170 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 249 (402)
++.+|..|+.+++++....|+... +.++.+..++ .+.++.++..|+++|..++...+.. ......++|.++.+
T Consensus 155 ~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~ 227 (618)
T 1w63_A 155 NSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLL-NEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRI 227 (618)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHH
Confidence 999999999999999876664322 4677777777 6788999999999999998664321 12234556666655
Q ss_pred ccC---------------CChhHHHHHHHHHHHhccCChHHHH-------HHH---------------------------
Q 015687 250 IHS---------------NDDEVLTDACWALSYLSDGTNDKIQ-------AVI--------------------------- 280 (402)
Q Consensus 250 L~~---------------~~~~v~~~a~~~l~~l~~~~~~~~~-------~~~--------------------------- 280 (402)
|.. .++..+..++.++..++..+++... .+.
T Consensus 228 L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~ 307 (618)
T 1w63_A 228 LKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE 307 (618)
T ss_dssp HHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC
Confidence 532 3566666666666666654332110 000
Q ss_pred ---HhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCC
Q 015687 281 ---EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357 (402)
Q Consensus 281 ---~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~ 357 (402)
...+++.|..++.++++.++..|+.+|+.++...+. .+. ...+.++..+.++ +..+|..|..+|..++...
T Consensus 308 ~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~~-~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~ 381 (618)
T 1w63_A 308 SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AVQ-RHRSTIVDCLKDL-DVSIKRRAMELSFALVNGN 381 (618)
T ss_dssp HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HHG-GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HHH-HHHHHHHHHccCC-ChhHHHHHHHHHHHHcccc
Confidence 012456677777778888888888888888865442 222 3566788888887 8899999999999988642
Q ss_pred HHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 358 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
. +.. +++.|...+.+.+.+++..++.+|+.++..
T Consensus 382 n--v~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 382 N--IRG-----MMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp S--THH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred c--HHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 1 222 356777778888999999999999999874
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-13 Score=115.56 Aligned_cols=185 Identities=22% Similarity=0.232 Sum_probs=158.9
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh
Q 015687 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (402)
Q Consensus 113 ~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (402)
.+..+.++++|.+++ +.++..|+++|+.+.. .+.++.|+.+|.++++.++..++++|+.+..
T Consensus 13 ~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred CcchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 356889999999998 9999999999998764 2578999999999999999999999999842
Q ss_pred HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCC
Q 015687 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~ 272 (402)
.+.++.|+..+ .++++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 75 -----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 136 (201)
T 3ltj_A 75 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 136 (201)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--
Confidence 13678888888 77899999999999998753 2578899999999999999999999999853
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 015687 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352 (402)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n 352 (402)
.+.++.|..++.++++.++..|+++|+.+. .+ ..++.|..++.++ ++.+|..|.++|..
T Consensus 137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAETG-TGFARKVAVNYLET 195 (201)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 246788999999999999999999999993 22 3567888899888 99999999999998
Q ss_pred Hh
Q 015687 353 IT 354 (402)
Q Consensus 353 l~ 354 (402)
+.
T Consensus 196 l~ 197 (201)
T 3ltj_A 196 HK 197 (201)
T ss_dssp CC
T ss_pred HH
Confidence 74
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.5e-14 Score=145.49 Aligned_cols=316 Identities=13% Similarity=0.163 Sum_probs=219.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc--h
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN--T 150 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~--~ 150 (402)
++.+.+.+.+.++..+..|+.++..++...........+. .+++.++..+.+++ +.++..++|+++.++...... .
T Consensus 371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCC
Confidence 3445556678889999999999999975321112222222 47889999998887 999999999999988642111 0
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-----chhhHHHHhcCChHHHHHHhcc-chhhHHHHHHHHHH
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-----PKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTL 224 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-----~~~~~~~~~~g~i~~L~~~l~~-~~~~~~~~~a~~~L 224 (402)
.... ..+++.++..+.++ +.++..++++|.+++... ......+ ..+++.++..+.. +.+..++..++.++
T Consensus 449 ~~~~-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 449 QQHL-PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp TTTH-HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 0111 14678888888776 899999999999997532 1122222 2256677777743 33478999999999
Q ss_pred HHhhhCCCCCchhhhhchHHHHHHhccC---------------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 015687 225 SNFCRGKPQPLFEQTRPALPALERLIHS---------------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 289 (402)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~l~~L~~lL~~---------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~ 289 (402)
..++...+.........++|.++..+.. ....++..++.++..++........... ..+++.+.
T Consensus 525 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~ 603 (861)
T 2bpt_A 525 TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFF 603 (861)
T ss_dssp HHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHH
T ss_pred HHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHH
Confidence 9999886544444556677777776642 1355778899999988854433211111 24667778
Q ss_pred HhcCCCCh-hhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 015687 290 ELLRHPSP-SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 368 (402)
Q Consensus 290 ~~L~~~~~-~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 368 (402)
..+.+.+. .++..++.+++.++..........+. .++|.+...+.++ ++.++..++++++.++....+.....+. .
T Consensus 604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~ 680 (861)
T 2bpt_A 604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSD-A 680 (861)
T ss_dssp HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHH-H
T ss_pred HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchHH-H
Confidence 88877766 89999999999998654332222232 4788999999777 8889999999999998743333444443 3
Q ss_pred CHHHHHHHhccCC--HHHHHHHHHHHHHhhcC
Q 015687 369 IIGPLVNLLLNAE--FEIKKEAAWAISNATSG 398 (402)
Q Consensus 369 ~i~~L~~ll~~~~--~~v~~~a~~aL~nl~~~ 398 (402)
+++.++..+.+.+ ++++..++.+++.++..
T Consensus 681 l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 681 MMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp HHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 7888888888764 88999999999988753
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.57 E-value=8.3e-14 Score=143.02 Aligned_cols=311 Identities=16% Similarity=0.179 Sum_probs=204.2
Q ss_pred HHHHHHhhcC-------CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcC
Q 015687 73 LPAMVAGVWS-------DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145 (402)
Q Consensus 73 i~~l~~~l~s-------~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~ 145 (402)
++.+++.+.. ++...+..|+.++..+...- . +.++ ..+++.+...+.+++ +.++..|+++|+.++.+
T Consensus 323 l~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~-~---~~~~-~~~l~~l~~~l~~~~-~~~r~~a~~~l~~i~~~ 396 (876)
T 1qgr_A 323 VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC-E---DDIV-PHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEG 396 (876)
T ss_dssp HHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH-G---GGGH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSS
T ss_pred hHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHC-c---HhhH-HHHHHHHHHHccCCC-hHHHHHHHHHHHHHHcC
Confidence 5666777652 34567778888888776432 1 1222 246777788888877 89999999999999986
Q ss_pred CC-cchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh---hHHHHhcCChHHHHHHhccchhhHHHHHHH
Q 015687 146 TS-ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC---RDLVLSNGALMPLLAQFNEHAKLSMLRNAT 221 (402)
Q Consensus 146 ~~-~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~ 221 (402)
.. +...... .+++|.++..+.++++.+|..|+|+|++++...+.. ...+ ..+++.++..+.+ ++.++..++
T Consensus 397 ~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~--~~~v~~~a~ 471 (876)
T 1qgr_A 397 PEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSA--EPRVASNVC 471 (876)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTS--CHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcC--CHHHHHHHH
Confidence 54 3232333 358999999999999999999999999998654321 1111 1356777777733 378899999
Q ss_pred HHHHHhhhCCC--------------CCchhhhhchHHHHHHhccCC---ChhHHHHHHHHHHHhc---------------
Q 015687 222 WTLSNFCRGKP--------------QPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLS--------------- 269 (402)
Q Consensus 222 ~~L~~l~~~~~--------------~~~~~~~~~~l~~L~~lL~~~---~~~v~~~a~~~l~~l~--------------- 269 (402)
|++.+++.... ..-..+...++|.|..++... +..++..++.++..++
T Consensus 472 ~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~ 551 (876)
T 1qgr_A 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTT 551 (876)
T ss_dssp HHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHH
Confidence 99999986521 112234466777777777543 2344444444444333
Q ss_pred -----------------------------------------cCCh-HHHHHHHHhCcHHHHHHhcCCCC--hhhHHHHHH
Q 015687 270 -----------------------------------------DGTN-DKIQAVIEAGVCPRLVELLRHPS--PSVLIPALR 305 (402)
Q Consensus 270 -----------------------------------------~~~~-~~~~~~~~~~~i~~L~~~L~~~~--~~v~~~a~~ 305 (402)
.... ...... -..+++.++..+.+.. +.++..++.
T Consensus 552 ~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~v~~~a~~ 630 (876)
T 1qgr_A 552 LVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQI-SDVVMASLLRMFQSTAGSGGVQEDALM 630 (876)
T ss_dssp HHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTT-HHHHHHHHHHHC-----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHH-HHHHHHHHHHHHHhccCCCCccHHHHH
Confidence 2211 111100 1135667777777664 478999999
Q ss_pred HHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHH
Q 015687 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFE 383 (402)
Q Consensus 306 ~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~ 383 (402)
+++.++..........+. .++|.+...+.+..++.+|..++++++.++......+...+. .+++.|+..+.+ .+.+
T Consensus 631 ~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~ 708 (876)
T 1qgr_A 631 AVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCD-EVMQLLLENLGNENVHRS 708 (876)
T ss_dssp HHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHTCTTSCGG
T ss_pred HHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHhCCccccHH
Confidence 999998643222222222 367888888876546889999999999998643333444443 478889999987 4678
Q ss_pred HHHHHHHHHHHhhc
Q 015687 384 IKKEAAWAISNATS 397 (402)
Q Consensus 384 v~~~a~~aL~nl~~ 397 (402)
++..+++++++++.
T Consensus 709 ~~~~~~~~l~~i~~ 722 (876)
T 1qgr_A 709 VKPQILSVFGDIAL 722 (876)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999999875
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-13 Score=139.67 Aligned_cols=316 Identities=14% Similarity=0.183 Sum_probs=218.0
Q ss_pred cHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCc--hhHHhhcCcHHHHHHhhcCC--CCHHHHHHHHHHHHHhhcCC
Q 015687 72 SLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRD--DFPQLQFEAAWALTNIASGT 146 (402)
Q Consensus 72 ~i~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~--~~~~~~~g~i~~L~~lL~~~--~~~~~~~~a~~~L~~l~~~~ 146 (402)
-++.+++.+.++ ++..+..++..+..+...-.... ... ....+++.+...+.++ + +.++..|+.+++.+...-
T Consensus 135 ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~-~~vr~~al~~l~~~~~~~ 212 (861)
T 2bpt_A 135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVS-SSNNILIAIVQGAQSTETS-KAVRLAALNALADSLIFI 212 (861)
T ss_dssp HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGG-GHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHH-HHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHHHHHH
Confidence 467888888888 99999999999988865321110 111 1223677778888876 5 899999999999875421
Q ss_pred Ccch-HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHH
Q 015687 147 SENT-RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 225 (402)
Q Consensus 147 ~~~~-~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~ 225 (402)
.... .......+++.|...+.+++.+++..++.+|..++...+..-...+...+++.++..+ .+.+..++..++.++.
T Consensus 213 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~vr~~a~~~l~ 291 (861)
T 2bpt_A 213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATM-KSPNDKVASMTVEFWS 291 (861)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHT-TCSSHHHHHHHHHHHH
T ss_pred HHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHH
Confidence 1110 0000113577778888889999999999999999865432211111214555666666 5678899999999999
Q ss_pred HhhhCCC---------------CCc--hhhhhchHHHHHHhccCC-------ChhHHHHHHHHHHHhccCChHHHHHHHH
Q 015687 226 NFCRGKP---------------QPL--FEQTRPALPALERLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAVIE 281 (402)
Q Consensus 226 ~l~~~~~---------------~~~--~~~~~~~l~~L~~lL~~~-------~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 281 (402)
.++.... ... ......++|.++..+... +..++..+..++..++....+. ++
T Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~---~~- 367 (861)
T 2bpt_A 292 TICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH---IL- 367 (861)
T ss_dssp HHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG---GH-
T ss_pred HHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh---HH-
Confidence 8887521 111 123367788888888642 3468889999998887532211 11
Q ss_pred hCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH
Q 015687 282 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 360 (402)
Q Consensus 282 ~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~ 360 (402)
..+++.+...+.+.++.++..|+++++.++.+.. ......+. .+++.++..+.++ ++.+|..++|+++.++...+..
T Consensus 368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~ 445 (861)
T 2bpt_A 368 EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAES 445 (861)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhhhh
Confidence 1356777778888899999999999999998753 44433443 5788999999888 9999999999999998631111
Q ss_pred H--HHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 361 I--QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 361 ~--~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
. ...+ ..+++.|+..+.++ +.++..|+|+|.+++.+
T Consensus 446 ~~~~~~~-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 446 IDPQQHL-PGVVQACLIGLQDH-PKVATNCSWTIINLVEQ 483 (861)
T ss_dssp SCTTTTH-HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHH-HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHh
Confidence 0 0111 22678888888765 99999999999998764
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.4e-12 Score=123.00 Aligned_cols=294 Identities=15% Similarity=0.165 Sum_probs=208.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
+..+-+.+++++...+..++..+..+.... .+. ..+....++++.+++ ...+..+...+..++..+++...
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~~~~G-~d~------~~~~~~vik~~~s~~-~~~Krl~Yl~~~~~~~~~~e~~~- 106 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYMHMLG-YPA------HFGQLECLKLIASQK-FTDKRIGYLGAMLLLDERQDVHL- 106 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHHHHTT-CCC------GGGHHHHHHHHHSSS-HHHHHHHHHHHHHHCCCCHHHHH-
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHcC-CCC------cchHHHHHHHHcCCc-hHHHHHHHHHHHHHhCCCcHHHH-
Confidence 456666777766666666666665554433 221 224667778888887 78888888888888875443211
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
-++..|.+-|.++++.++..|+++|+++.. ++. . ...++.+...+ .+.++.+++.|+.++..+....|
T Consensus 107 ----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~----~-~~l~~~l~~~L-~~~~~~VRk~A~~al~~l~~~~p 174 (618)
T 1w63_A 107 ----LMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEM----C-RDLAGEVEKLL-KTSNSYLRKKAALCAVHVIRKVP 174 (618)
T ss_dssp ----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHH----H-HHHHHHHHHHH-HSCCHHHHHHHHHHHHHHHHHCG
T ss_pred ----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHH----H-HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHCh
Confidence 257888888999999999999999999973 221 1 23577788888 77899999999999999998754
Q ss_pred CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC---------------CCh
Q 015687 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH---------------PSP 297 (402)
Q Consensus 233 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~---------------~~~ 297 (402)
. ...++++.+..+|.+.|+.|+..|++++..++..+++....+ ..+++.++.+|.+ .++
T Consensus 175 ~----~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~ 248 (618)
T 1w63_A 175 E----LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDP 248 (618)
T ss_dssp G----GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCH
T ss_pred H----HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCC
Confidence 2 335788889999999999999999999999997655432222 2566777766532 366
Q ss_pred hhHHHHHHHHHHhhcCChHHHHH-------H----------------------Hh--------CCChHHHHHHhcCCCch
Q 015687 298 SVLIPALRTVGNIVTGDDMQTQC-------I----------------------IN--------HQALPCLLDLLTQNYKK 340 (402)
Q Consensus 298 ~v~~~a~~~l~nl~~~~~~~~~~-------i----------------------~~--------~~~l~~L~~ll~~~~~~ 340 (402)
-.+..++++++.++..++..... + +. ..+++.|..++.++ ++
T Consensus 249 ~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~-d~ 327 (618)
T 1w63_A 249 FLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNN-DK 327 (618)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCS-ST
T ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC-CC
Confidence 67777888888887655432110 0 00 02456777777777 88
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 341 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 341 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
.+|..|..+|+.++...+..+ . ...+.++..+.+++..+|..|+.+|..++...
T Consensus 328 ~vr~~aL~~L~~i~~~~p~~~----~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~ 381 (618)
T 1w63_A 328 NIRYVALTSLLKTVQTDHNAV----Q-RHRSTIVDCLKDLDVSIKRRAMELSFALVNGN 381 (618)
T ss_dssp TTHHHHHHHHHHHHHHHHHHH----G-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS
T ss_pred chHHHHHHHHHHHHhhCHHHH----H-HHHHHHHHHccCCChhHHHHHHHHHHHHcccc
Confidence 888888888888876544422 2 25667888888889999999999999988754
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.48 E-value=6.4e-13 Score=141.23 Aligned_cols=314 Identities=15% Similarity=0.155 Sum_probs=221.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.++.+++.+.+.|++.+..|...|.+.+... ....+.-....+++.+++.|.+.+ +.+|..|+.+|+.++...++ .
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~--~ 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKE--Y 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCH--H
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCH--H
Confidence 4789999999999999999999999886543 111111122346888999998877 89999999999999976444 1
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh-----HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHH
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR-----DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~-----~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 226 (402)
.+ ..+++.|+..+.++++.+|..++.+|+.++...+... ..-....+++.|+..+.++++..++..++.+|..
T Consensus 83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 11 2468888888888899999999999999985433210 0111223788888888435778999999999999
Q ss_pred hhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC-ChhhHHHHHH
Q 015687 227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALR 305 (402)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~-~~~v~~~a~~ 305 (402)
++...+..-......+++.+...|.++++.++..++.+++.++....+. + -..+++.++..|.+. ++.++..++.
T Consensus 161 ~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 161 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQ 236 (1230)
T ss_dssp HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHHHH
Confidence 9976433333355788899999999999999999999999998765432 1 124577777777543 3467888999
Q ss_pred HHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc------
Q 015687 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN------ 379 (402)
Q Consensus 306 ~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------ 379 (402)
+++.++...+...... -..++|.+...+.+. ++.+|..+++++..++...++.+...+. .+++.++..+..
T Consensus 237 ~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~ 313 (1230)
T 1u6g_C 237 CIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNY 313 (1230)
T ss_dssp HHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC-----
T ss_pred HHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCC
Confidence 9999886543321111 136889999999887 8999999999999998743332222222 144444444321
Q ss_pred -------------------------------CCHHHHHHHHHHHHHhhcC
Q 015687 380 -------------------------------AEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 380 -------------------------------~~~~v~~~a~~aL~nl~~~ 398 (402)
...++|..|+.++..++..
T Consensus 314 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~ 363 (1230)
T 1u6g_C 314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVST 363 (1230)
T ss_dssp -------------------------------CTTHHHHHHHHHHHHHHTT
T ss_pred cccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHh
Confidence 1245799999999988763
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.40 E-value=4.3e-12 Score=134.92 Aligned_cols=318 Identities=12% Similarity=0.166 Sum_probs=218.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCc----hhHHhhcCcHHHHHHhhcC-CCCHHHHHHHHHHHHHhhcCC
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP----INEVIQSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASGT 146 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~----~~~~~~~g~i~~L~~lL~~-~~~~~~~~~a~~~L~~l~~~~ 146 (402)
.++.++..+.++++..+..|+.++..++..-.... ...-....++|.|++.+.+ ++ +.++..|+.+|..++...
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence 35677788888888888889999988875431110 1111233578999999984 55 899999999999998532
Q ss_pred CcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHH
Q 015687 147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (402)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 226 (402)
+....... ..+++.|...+.++++.+|..|+.+|+.++...+. .+ -...++.++..+....+..++..++.++..
T Consensus 166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 22111111 24678888888999999999999999999976542 12 223578888888554445677788999999
Q ss_pred hhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC------------
Q 015687 227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH------------ 294 (402)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~------------ 294 (402)
++...+..-......++|.+...+.+++++++..+++++..++..........+ ..+++.++..+..
T Consensus 241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence 987754322334578999999999989999999999999888754332111111 2234444444421
Q ss_pred -------------------------CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHH
Q 015687 295 -------------------------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT 349 (402)
Q Consensus 295 -------------------------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~ 349 (402)
..+.++..|+.+++.++...+.....++ ..++|.+...+.+. ++.+|..++.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~ 397 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA 397 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence 1245788999999999875543333333 36788888888777 88999999998
Q ss_pred HHHHhc--CC-----------------HHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 350 ISNITA--GN-----------------VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 350 L~nl~~--~~-----------------~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
+..++. +. ...+..++. .+++.+...+.+.++.+|..++.+|+.++.++
T Consensus 398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~ 465 (1230)
T 1u6g_C 398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP-NIVKALHKQMKEKSVKTRQCCFNMLTELVNVL 465 (1230)
T ss_dssp HHHHHHHHCCC------------CCCHHHHHHHHTT-HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhccccccccCccccccccchHHHHHHHhh-HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Confidence 887764 11 122223332 36777778899999999999999999987653
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.40 E-value=5.3e-10 Score=109.53 Aligned_cols=339 Identities=14% Similarity=0.173 Sum_probs=219.1
Q ss_pred CCCchHHhhhhHHHHHHHHHHhhh----HHHHhhhhc------cccCCCCCcchhhhhhhhhccHHHHHHhhcCCCHHHH
Q 015687 19 AVDAEEGRRRREDNMVEIRKNKRE----ESLLKKRRE------GLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQ 88 (402)
Q Consensus 19 ~~~~~~~r~~r~~~~~~lRk~~r~----~~~~~kr~~------~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~~~ 88 (402)
..+.++.+++-.....+||++-+. ..-.|++.+ .+...+.+ .....+++.+.+++...+
T Consensus 23 ~~~~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s-----------~~~~~vvkl~~s~~~~~K 91 (621)
T 2vgl_A 23 CKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDID-----------FGHMEAVNLLSSNRYTEK 91 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCC-----------SCHHHHHHGGGCSCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCc-----------hhHHHHHHHhcCCCHHHH
Confidence 455566676666677788877652 222232221 11111111 356888999999999999
Q ss_pred HHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhh--
Q 015687 89 LDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL-- 166 (402)
Q Consensus 89 ~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL-- 166 (402)
..+.-.+..++..+ + +.++- +++.+.+=|.+++ +.++-.|+.+|+++.. ++ +.+ .+++.+.+++
T Consensus 92 rl~YL~l~~~~~~~--~--e~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e----~~~-~l~~~v~~~l~~ 157 (621)
T 2vgl_A 92 QIGYLFISVLVNSN--S--ELIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--RE----MAE-AFAGEIPKILVA 157 (621)
T ss_dssp HHHHHHHHHSCCCC--H--HHHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HH----HHH-HHTTHHHHHHHC
T ss_pred HHHHHHHHHHccCC--c--HHHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HH----HHH-HHHHHHHHHHhC
Confidence 98888888876432 1 21111 3677888888888 8999999999999965 33 222 4678889999
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHH
Q 015687 167 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPAL 246 (402)
Q Consensus 167 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L 246 (402)
.+.++-||..|+.++.++....|+. +...+.++.+..+| .+.++.++.+++.++..++...+..-......++..|
T Consensus 158 ~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L 233 (621)
T 2vgl_A 158 GDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRL 233 (621)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 8899999999999999998766542 22247889999999 7788999999999999998765321001111122222
Q ss_pred HHhccCC-------------ChhHHHHHHHHHHHhccCC-hHHHHHH-------H-------------------------
Q 015687 247 ERLIHSN-------------DDEVLTDACWALSYLSDGT-NDKIQAV-------I------------------------- 280 (402)
Q Consensus 247 ~~lL~~~-------------~~~v~~~a~~~l~~l~~~~-~~~~~~~-------~------------------------- 280 (402)
..++... ++-.+...+..+..++..+ ++....+ +
T Consensus 234 ~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea 313 (621)
T 2vgl_A 234 SRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEA 313 (621)
T ss_dssp HHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHH
Confidence 2222110 3334444444444443211 1111100 0
Q ss_pred -------------HhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc-CCCchhHHHHH
Q 015687 281 -------------EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEA 346 (402)
Q Consensus 281 -------------~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~-~~~~~~v~~~a 346 (402)
-..++..|..+|.+.++.++..++.+|..++...+. .. .+. ...+.++..+. ++ +..+|..+
T Consensus 314 ~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~~-~~~~~i~~~L~~d~-d~~Ir~~a 389 (621)
T 2vgl_A 314 ISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AVK-THIETVINALKTER-DVSVRQRA 389 (621)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HHH-TTHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HHH-HHHHHHHHHhccCC-CHhHHHHH
Confidence 012455667777777788888888888888765531 11 222 45677778887 77 88899999
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 347 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 347 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
.-+|..++. +.++..+ +..|...+...+.+++.+++.+++.++.
T Consensus 390 L~lL~~l~~--~~Nv~~I-----v~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 390 VDLLYAMCD--RSNAQQI-----VAEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp HHHHHHHCC--HHHHHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--hhhHHHH-----HHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 999988874 4555554 4566777777888999999999988874
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.7e-11 Score=118.49 Aligned_cols=215 Identities=17% Similarity=0.138 Sum_probs=157.2
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHH-HHhhCCCCHHHHHHHHHHHHHhhCC-Cchh
Q 015687 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF-VRLLSSPTDDVREQAVWALGNVAGD-SPKC 191 (402)
Q Consensus 114 g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~ 191 (402)
.++| +++.|++++ +..|..|+++|++|+.+ +..+..+...|+|..+ ..+|.+++.++|..|+++|+||+.+ .+..
T Consensus 35 ~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 35 KILP-VLKDLKSPD-AKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp TTHH-HHHHHSSSC-CSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHH-HHHHcCCCC-HHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 3444 567789888 89999999999999974 7888888888888775 5588999999999999999999965 4667
Q ss_pred hHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC
Q 015687 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (402)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 271 (402)
++.+...|++++|..++.+. ...+..+........ ......+ .++...++.+|.+|+.+
T Consensus 112 ~~~l~~~~il~~L~~~l~~~---------~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~L~e~ 170 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAV---------LETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGLLALA 170 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHH---------HHHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhh---------HHHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHHHHhC
Confidence 88899999999999998321 122222221110000 0001111 12446677888888888
Q ss_pred ChHHHHHHHHhCcHHHHHHhcCC---CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChH---HHHHHhcCCCchhHHHH
Q 015687 272 TNDKIQAVIEAGVCPRLVELLRH---PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP---CLLDLLTQNYKKSIKKE 345 (402)
Q Consensus 272 ~~~~~~~~~~~~~i~~L~~~L~~---~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~---~L~~ll~~~~~~~v~~~ 345 (402)
+++....+...+.++.|+..|.+ ....++..|+.+|..++..++...+.+.+.+... .+..+.. . +...+..
T Consensus 171 s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~-~~~~~~l 248 (684)
T 4gmo_A 171 RDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-G-TDPRAVM 248 (684)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-S-SCTTHHH
T ss_pred CHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-C-CcHHHHH
Confidence 88877788888999999998843 2457999999999999999998888888876543 3333333 3 4456889
Q ss_pred HHHHHHHHh
Q 015687 346 ACWTISNIT 354 (402)
Q Consensus 346 a~~~L~nl~ 354 (402)
++++|.|+.
T Consensus 249 a~giL~Ni~ 257 (684)
T 4gmo_A 249 ACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhHh
Confidence 999999985
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-09 Score=84.41 Aligned_cols=217 Identities=14% Similarity=0.189 Sum_probs=178.1
Q ss_pred hCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCC
Q 015687 155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 234 (402)
Q Consensus 155 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 234 (402)
+..++..++.+|.+.-..++.+|+..+.+++...|+.... .+..|+.++..+....+......++..++...|
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence 3457889999999988999999999999999988876444 355778888778888888889999999998754
Q ss_pred chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 015687 235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 314 (402)
Q Consensus 235 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~ 314 (402)
..+.+.+|.+..-..-.|+.++.+..++|..++...+.... +++.-+..++.+++..-+..|+..|+.+..+.
T Consensus 103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 45578888888888888999999999999999987775433 56778899999999888899999999988776
Q ss_pred hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 015687 315 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394 (402)
Q Consensus 315 ~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n 394 (402)
..+.. -.+|.|..+|.+. +.-||..|+-+|.+++..++..+..+. .-+.-+++.+..+++....+|+.
T Consensus 176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHH
T ss_pred ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHH
Confidence 65443 6789999999999 999999999999999998888544333 33566778888899888888887
Q ss_pred hhc
Q 015687 395 ATS 397 (402)
Q Consensus 395 l~~ 397 (402)
++.
T Consensus 244 l~l 246 (253)
T 2db0_A 244 LLL 246 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=99.27 E-value=4.4e-10 Score=111.75 Aligned_cols=272 Identities=14% Similarity=0.141 Sum_probs=193.9
Q ss_pred cHHHHHHhhc---CCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC-------CHHHHHHHHHHHHH
Q 015687 72 SLPAMVAGVW---SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-------FPQLQFEAAWALTN 141 (402)
Q Consensus 72 ~i~~l~~~l~---s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~-------~~~~~~~a~~~L~~ 141 (402)
++..+-+.|. ++++..+.-|+..|.-+-++.. +. ++..|...|.+++ .+.++..|+..|+-
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----RD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----HH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----HH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3455555665 5677888888888888755431 11 4667777776543 26788899999998
Q ss_pred hhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHH
Q 015687 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 221 (402)
Q Consensus 142 l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~ 221 (402)
+..++... .+++.|..++.+.+..+++.|+.+||-+..+... .+ ++..|+..+....+..+++.++
T Consensus 464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~~------ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-PE------AIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-HH------HHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-HH------HHHHHHHHHhccCcHHHHHHHH
Confidence 77664321 3577788888887888888999999987433321 11 3556666665566788999999
Q ss_pred HHHHHhhhCCCCCchhhhhchHHHHHHhcc-CCChhHHHHHHHHHHH--hccCChHHHHHHHHhCcHHHHHHhc-CCCCh
Q 015687 222 WTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSY--LSDGTNDKIQAVIEAGVCPRLVELL-RHPSP 297 (402)
Q Consensus 222 ~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~i~~L~~~L-~~~~~ 297 (402)
.+|..+..+.+ ..++.++..|. +.++-++..++.+++. ...++... ++.|+..+ .+.+.
T Consensus 530 lgLGll~~g~~--------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~d 592 (963)
T 4ady_A 530 VGLALINYGRQ--------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSND 592 (963)
T ss_dssp HHHHHHTTTCG--------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSCH
T ss_pred HHHHhhhCCCh--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCcH
Confidence 99998876532 45666776665 4678888888877754 33444433 34444443 46678
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh
Q 015687 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377 (402)
Q Consensus 298 ~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 377 (402)
.+|..|+.+||.+..+++ ..++.++.+|.+.+++.+|..|+++|+.++++++.. .++..|..++
T Consensus 593 ~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~ 656 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHc
Confidence 899999999999988775 345667765554449999999999999999876531 1566778888
Q ss_pred ccCCHHHHHHHHHHHHHhhcCC
Q 015687 378 LNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 378 ~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
.+.+..|+..|+.+|+.+..+.
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHSTTC
T ss_pred cCCCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999988764
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-10 Score=114.87 Aligned_cols=195 Identities=14% Similarity=0.105 Sum_probs=151.5
Q ss_pred ChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHH-HHHhccCCChhHHHHHHHHHHHhccC-ChHHHH
Q 015687 200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA-LERLIHSNDDEVLTDACWALSYLSDG-TNDKIQ 277 (402)
Q Consensus 200 ~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~-L~~lL~~~~~~v~~~a~~~l~~l~~~-~~~~~~ 277 (402)
.+.++++.| +++++..+..||++|++|+.+..........++++. +..+|.+++.+|+..|+++|.||+.. ..+...
T Consensus 35 ~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 566788888 788999999999999999976433333344566654 56788999999999999999999854 566778
Q ss_pred HHHHhCcHHHHHHhcCCCC---------------------hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC
Q 015687 278 AVIEAGVCPRLVELLRHPS---------------------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336 (402)
Q Consensus 278 ~~~~~~~i~~L~~~L~~~~---------------------~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~ 336 (402)
.++..|+++.|..++.... +.+...++.+|.+++.+++.....+...+.++.|+..|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 8999999999998874210 1244568889999999888888888889999999998854
Q ss_pred C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCH---HHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 337 N--YKKSIKKEACWTISNITAGNVNQIQAIIEAGII---GPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 337 ~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i---~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
. ....++..|+.+|.+++.++++.++.+.+.+.. ..+..+ ..++...+..+++.|.|+.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence 3 135799999999999999999999998887653 333333 3344556778999999975
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2.6e-09 Score=104.71 Aligned_cols=255 Identities=15% Similarity=0.151 Sum_probs=179.0
Q ss_pred HHHHHHhh--cCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 73 LPAMVAGV--WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 73 i~~l~~~l--~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
++.+.+.+ .+.++.++..|+.++.++.... + +.+...++++.+.++|.+.+ +.++..|+.++..++..+++.
T Consensus 148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~--p--~~~~~~~~~~~l~~lL~d~d-~~V~~~a~~~l~~i~~~~~~~- 221 (621)
T 2vgl_A 148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTS--P--DLVPMGDWTSRVVHLLNDQH-LGVVTAATSLITTLAQKNPEE- 221 (621)
T ss_dssp TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC--G--GGCCCCSCHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCHHH-
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC--h--hhcCchhHHHHHHHHhCCCC-ccHHHHHHHHHHHHHHhChHH-
Confidence 46667777 6778888888888888887532 2 11222578999999998888 899999999999999865432
Q ss_pred HHHHhCCchHHHH----HhhCC-------------CCHHHHHHHHHHHHHhhCC-CchhhHHHHhcCChHHHHHHhc---
Q 015687 151 RVVIDHGAVPIFV----RLLSS-------------PTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFN--- 209 (402)
Q Consensus 151 ~~~~~~g~i~~L~----~lL~~-------------~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~--- 209 (402)
+. ..+|.++ +++.. +++-.+...+..|+.++.. ++..+..+.+ .+..++..+.
T Consensus 222 --~~--~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ 295 (621)
T 2vgl_A 222 --FK--TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPP 295 (621)
T ss_dssp --HT--THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCC
T ss_pred --HH--HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCc
Confidence 11 2344444 44322 1678898999999998863 3444444443 4444444321
Q ss_pred -----cchh--hHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHh
Q 015687 210 -----EHAK--LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 282 (402)
Q Consensus 210 -----~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 282 (402)
++.+ ..+...++.++..+. ........++..|..+|.+.+++++..++.++..++...+.. . ++ .
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~-----~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~-~~-~ 367 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHD-----SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH-E-AV-K 367 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-H-HH-H
T ss_pred ccccccccchHHHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-H-HH-H
Confidence 1223 377888888888774 123445678888999999999999999999999998765321 1 22 2
Q ss_pred CcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 283 GVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 283 ~~i~~L~~~L~-~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
.....++..|. +++..++..++.++..++. +.....+ +..|...+.+. +.+++.+++..++.++.
T Consensus 368 ~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~I-----v~eL~~yl~~~-d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 368 THIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQI-----VAEMLSYLETA-DYSIREEIVLKVAILAE 433 (621)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHHH-----HHHHHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHHH-----HHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 45677888888 8999999999999999974 3444433 44677777777 88888888888888774
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-08 Score=91.13 Aligned_cols=277 Identities=14% Similarity=0.066 Sum_probs=164.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
...+++.++++|...+...--.+..+... .++ ++ =+++.|.+=+++++ +-++-.|+++|++|... +..+
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e----~i--Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~~--~m~~- 138 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED----VI--IVTSSLTKDMTGKE-DSYRGPAVRALCQITDS--TMLQ- 138 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC----GG--GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCCT--TTHH-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH----HH--HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCCH--HHHH-
Confidence 56778899999999999888888777532 122 22 14788889999988 89999999999999873 3333
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
.+.+.+.+.|.+.++-||..|+.+...+....|+. + .++++.+-+++ .+.++.++.+|..++..++..+
T Consensus 139 ----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~---v--~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d- 207 (355)
T 3tjz_B 139 ----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV---V--KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND- 207 (355)
T ss_dssp ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH---H--HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC-
T ss_pred ----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH---H--HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc-
Confidence 35677888999999999999999999999887753 2 25888888888 7778889999999999998753
Q ss_pred CCchhhhhchHHHHHHhccCC---ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHH
Q 015687 233 QPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (402)
Q Consensus 233 ~~~~~~~~~~l~~L~~lL~~~---~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~ 308 (402)
...+..++..+... ++-.+...++.+..++..+ +. ....+++.+.++|++.++.|...|+++|.
T Consensus 208 -------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~ 275 (355)
T 3tjz_B 208 -------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAIV 275 (355)
T ss_dssp -------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHT
T ss_pred -------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 11333444444332 4555566666665655443 21 12356788889999999999999999998
Q ss_pred HhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHH
Q 015687 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA 388 (402)
Q Consensus 309 nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 388 (402)
.+...+.. .. ..++..|..++.++ ++.+|-.|...|..+....|+.++. .-..+.+++.+++..+.--|
T Consensus 276 ~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~A 344 (355)
T 3tjz_B 276 NLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLA 344 (355)
T ss_dssp C----------------CCCTHHHHHHSS-SSSSHHHHHHCC--------------------------------------
T ss_pred hccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHH
Confidence 88652221 12 24567788888888 9999999999999998877776543 33456778888888777766
Q ss_pred HHHHHH
Q 015687 389 AWAISN 394 (402)
Q Consensus 389 ~~aL~n 394 (402)
+.+|..
T Consensus 345 ittllk 350 (355)
T 3tjz_B 345 ITTLLK 350 (355)
T ss_dssp ------
T ss_pred HHHhhh
Confidence 666543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-08 Score=99.40 Aligned_cols=274 Identities=16% Similarity=0.137 Sum_probs=192.8
Q ss_pred HHHHHHhhcCCC--------HHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 015687 73 LPAMVAGVWSDD--------RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 73 i~~l~~~l~s~~--------~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~ 144 (402)
+..|...|.+++ +.++..|+..|.....+..++ .+++.|...|.+++ ...+..|+.+|+.+..
T Consensus 431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e--------ev~e~L~~~L~dd~-~~~~~~AalALGli~v 501 (963)
T 4ady_A 431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI--------EVYEALKEVLYNDS-ATSGEAAALGMGLCML 501 (963)
T ss_dssp HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH--------HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhc
Confidence 455556665544 567777777777764443211 24677888888777 6777789999998755
Q ss_pred CCCcchHHHHhCCchHHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHH
Q 015687 145 GTSENTRVVIDHGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT 223 (402)
Q Consensus 145 ~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~ 223 (402)
++... .++..|++.+ ++.+..++..++.+|+.+....++ .++.+++.|....++.++..++.+
T Consensus 502 GTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~a 565 (963)
T 4ady_A 502 GTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFT 565 (963)
T ss_dssp TCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHH
T ss_pred ccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 53321 2345555543 456889999999999998776664 577788888667788888888888
Q ss_pred HHHhhhCCCCCchhhhhchHHHHHHhc-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCChhhHH
Q 015687 224 LSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLI 301 (402)
Q Consensus 224 L~~l~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L-~~~~~~v~~ 301 (402)
+.--+.+..+ ...++.|++.+ .+.+..++..|+.+|+.+..+.++ .++.++.+| .+.++.+|.
T Consensus 566 lglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~ 630 (963)
T 4ady_A 566 IALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRC 630 (963)
T ss_dssp HHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHH
T ss_pred HHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHH
Confidence 8755554222 23455444444 456788999999999998766542 356677654 577899999
Q ss_pred HHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH----HHHHHHcCCHHHHHHHh
Q 015687 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ----IQAIIEAGIIGPLVNLL 377 (402)
Q Consensus 302 ~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~----~~~l~~~~~i~~L~~ll 377 (402)
.+..++|.++.+++.. .+++.|..++.++ ++.||..|+.+|+.+..++.+. +.. +...|....
T Consensus 631 gAalALGli~aGn~~~-------~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~-----~l~~L~~~~ 697 (963)
T 4ady_A 631 GTAFALGIACAGKGLQ-------SAIDVLDPLTKDP-VDFVRQAAMIALSMILIQQTEKLNPQVAD-----INKNFLSVI 697 (963)
T ss_dssp HHHHHHHHHTSSSCCH-------HHHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTCCTTTCTTHHH-----HHHHHHHHH
T ss_pred HHHHHHHHhccCCCcH-------HHHHHHHHHccCC-CHHHHHHHHHHHHHHhcCCccccchHHHH-----HHHHHHHHH
Confidence 9999999999887631 2455777888888 9999999999999999865443 333 334456666
Q ss_pred cc--CCHHHHHHHHHHHHHhhcCC
Q 015687 378 LN--AEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 378 ~~--~~~~v~~~a~~aL~nl~~~~ 399 (402)
.+ .|+..+-.|..|.+-+-.||
T Consensus 698 ~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 698 TNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred hcccccHHHHHHHHHHHHHHhcCC
Confidence 54 56788888888888876665
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-07 Score=73.61 Aligned_cols=216 Identities=17% Similarity=0.204 Sum_probs=165.0
Q ss_pred hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCch
Q 015687 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPK 190 (402)
Q Consensus 112 ~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~ 190 (402)
+..++..++.+|.++- ..++..|+.++..++...++.... .+..|+.+++ ++...+.+....++|.++...|+
T Consensus 30 d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 5568899999998877 699999999999999876765544 3455666654 67777878889999999988776
Q ss_pred hhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhcc
Q 015687 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270 (402)
Q Consensus 191 ~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~ 270 (402)
..+. .+|.+..-. .-.++.++-+..++|..+.+.+| ....+++.-+..++.+.|..-+..++..++-+..
T Consensus 104 ~v~~-----vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 104 LVKS-----MIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp HHHH-----HHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred HHHh-----hHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 3222 344444444 44599999999999999998865 3445677788889998887777777777777776
Q ss_pred CChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHH
Q 015687 271 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 350 (402)
Q Consensus 271 ~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 350 (402)
+..... ...+|+|..+|.+.+.-+|..|..++++++.-++..+..+. ..+.-+++. +..+++..--.|
T Consensus 174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~-S~lv~~~V~egL 241 (253)
T 2db0_A 174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDT-SSLVNKTVKEGI 241 (253)
T ss_dssp TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCS-CHHHHHHHHHHH
T ss_pred cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCc-HHHHHHHHHHHH
Confidence 655432 35789999999999999999999999999999997555433 355566666 777777777777
Q ss_pred HHHhc
Q 015687 351 SNITA 355 (402)
Q Consensus 351 ~nl~~ 355 (402)
+.++.
T Consensus 242 ~rl~l 246 (253)
T 2db0_A 242 SRLLL 246 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77764
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.98 E-value=7e-09 Score=89.35 Aligned_cols=185 Identities=15% Similarity=0.236 Sum_probs=142.4
Q ss_pred HHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhcc-CCChhHHHHHHHHHHHhccCChHHHHHHH
Q 015687 202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVI 280 (402)
Q Consensus 202 ~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 280 (402)
+.+...+ .+.+...+..++..|..++...+.........+++.|...+. +.+..++..++.++..++..-.......+
T Consensus 18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3466777 678899999999999999887332111223577888999995 89999999999999999854322222222
Q ss_pred HhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHH
Q 015687 281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVN 359 (402)
Q Consensus 281 ~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~ 359 (402)
..+++.++..+.+.+..++..|..++..++.... .. .++|.+...+++. ++.+|..++..|+.+.. ..++
T Consensus 97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence 2478999999999999999999999999987543 11 3578899999988 99999999999999765 3333
Q ss_pred H-HHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 360 Q-IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 360 ~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
. ....+. .++|.|+.++.+.++++|..|..+++.++.
T Consensus 168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 2 223333 389999999999999999999999998763
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.8e-09 Score=90.39 Aligned_cols=186 Identities=14% Similarity=0.187 Sum_probs=142.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhh
Q 015687 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239 (402)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 239 (402)
+.+...+.+.+...|..++..|..++...+.....-. ..+++.|...+.++.+..++..++.++..|+..-...-....
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4577888999999999999999999865332111000 124556666673377889999999999999976432223455
Q ss_pred hchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCC-hHH-
Q 015687 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD-DMQ- 317 (402)
Q Consensus 240 ~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~-~~~- 317 (402)
..++|.++..+.+.++.++..+..++..+..... .. .+++.+...+.+.++.++..++..|+.+.... +..
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 7899999999999999999999999999886543 12 25788899999999999999999999976543 321
Q ss_pred HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 318 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 318 ~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
....+. .++|.|..++.++ ++.+|..|..+++.++.
T Consensus 170 ~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred cHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 122233 6789999999988 99999999999999986
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-08 Score=86.44 Aligned_cols=191 Identities=13% Similarity=0.185 Sum_probs=141.6
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHH-hhcCCCcchHHHHh-CCchHHHHHhh-CCCCHHHHHHHHHHHHHhhCCC--chhh
Q 015687 118 RFIEFLSRDDFPQLQFEAAWALTN-IASGTSENTRVVID-HGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDS--PKCR 192 (402)
Q Consensus 118 ~L~~lL~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~-~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~--~~~~ 192 (402)
.+.+.+.+.+ ...|..|+..|.. ++.+.++......+ ..++..|...+ .+.+..++..|+.+|+.++.+- +.+.
T Consensus 20 ~f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 20 DFQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp THHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred hHHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 3566678888 7889999999999 88654443210001 13577888888 7899999999999999998432 2232
Q ss_pred -HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhcc
Q 015687 193 -DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270 (402)
Q Consensus 193 -~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~ 270 (402)
..... +++.++..+ .+....++..+..++..++..- +.........+++.|...|.+.++.++..++.+|..++.
T Consensus 99 ~~y~~~--llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 99 KDYVSL--VFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHHHH--HHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 22222 688888888 6666889999999999999864 222111256789999999999999999999999999885
Q ss_pred CCh---HHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 015687 271 GTN---DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (402)
Q Consensus 271 ~~~---~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~ 312 (402)
... ......+...+++.+..++.+++..+|..|..+++.++.
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 443 222223335789999999999999999999999999874
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.4e-07 Score=84.69 Aligned_cols=279 Identities=11% Similarity=0.086 Sum_probs=177.5
Q ss_pred HhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHh
Q 015687 78 AGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID 155 (402)
Q Consensus 78 ~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 155 (402)
+.++.. |+.-...++..+..+.....+-+..++ ..+....++++.+.+ ..++.-....+.+++...++. +.
T Consensus 32 r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~--t~lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e~---iL- 104 (355)
T 3tjz_B 32 RVFNETPINPRKCAHILTKILYLINQGEHLGTTEA--TEAFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAEDV---II- 104 (355)
T ss_dssp GGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHH--HHHHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSCG---GG-
T ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHHH---HH-
Confidence 455543 454444455444444333323222222 235677789999998 899999888888888763332 22
Q ss_pred CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCc
Q 015687 156 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235 (402)
Q Consensus 156 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 235 (402)
++..|.+=+.++++-+|-.|+++|+++.... .-+. ..+.+-+.+ .+.++-+++.|+.+...|....|
T Consensus 105 --v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~~-----l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~p--- 171 (355)
T 3tjz_B 105 --VTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQA-----IERYMKQAI-VDKVPSVSSSALVSSLHLLKCSF--- 171 (355)
T ss_dssp --GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THHH-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCH---
T ss_pred --HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHHH-----HHHHHHHHc-CCCCHHHHHHHHHHHHHHhccCH---
Confidence 5778888889999999999999999996443 1111 344555666 78899999999999999986643
Q ss_pred hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC---ChhhHHHHHHHHHHhhc
Q 015687 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP---SPSVLIPALRTVGNIVT 312 (402)
Q Consensus 236 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~---~~~v~~~a~~~l~nl~~ 312 (402)
..+.++++.+-.++.+.++.+..+|+.++..+...+... +..++..+... ++-.+...++.++.++.
T Consensus 172 -e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a---------~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~ 241 (355)
T 3tjz_B 172 -DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLA---------VSKMISKFTRHGLKSPFAYCMMIRVASRQLE 241 (355)
T ss_dssp -HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHH---------HHHHHHHHHSSCCSCHHHHHHHHHHHTCC--
T ss_pred -HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHH---------HHHHHHHHhcCCCcChHHHHHHHHHHHHhcc
Confidence 234678999999999999999999999999998765322 23344444332 45555667777777766
Q ss_pred CC-hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHH
Q 015687 313 GD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 391 (402)
Q Consensus 313 ~~-~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 391 (402)
.+ +.. ...+++.+..+|++. ++.|.-+|+.++..+...... +. ..++..|..++.++++.+|..|+..
T Consensus 242 ~d~~~~-----~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~ 310 (355)
T 3tjz_B 242 DEDGSR-----DSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRT 310 (355)
T ss_dssp --------------------CCCCCS-SHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHC
T ss_pred ccchhh-----HHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHH
Confidence 54 222 236677888889988 999999999999998652222 22 2245677778888899999998887
Q ss_pred HHHhhc
Q 015687 392 ISNATS 397 (402)
Q Consensus 392 L~nl~~ 397 (402)
|..++.
T Consensus 311 L~~l~~ 316 (355)
T 3tjz_B 311 LNKVAM 316 (355)
T ss_dssp C-----
T ss_pred HHHHHH
Confidence 776654
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-07 Score=76.91 Aligned_cols=186 Identities=15% Similarity=0.131 Sum_probs=151.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.+..++..|+..|+..+..++.++..+++.. +...+...-..+++.++.++.+.+ +.+...|+.||..+..+.|-...
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCHH
Confidence 5678889999999999999999999999864 334444444557999999999888 99999999999999998776666
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
.+.. ++.+|..++.++++-++..++..++.+---.+ . . +++..+..++ .+.+..++..+..++.+++...
T Consensus 112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-~-~-----~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-S-K-----LVRTYINELV-VSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-C-H-----HHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-h-H-----HHHHHHHHHH-hCCChhHHHHHHHHHHHhhccc
Confidence 6664 68899999999999999999999999932221 1 1 2466778888 8999999999999999999874
Q ss_pred CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC
Q 015687 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 271 (402)
. +......++.-+-.+|.+.|+.++.-|+.++-.+...
T Consensus 182 ~--D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 182 A--DSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp S--SCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred C--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 2 2233456667777888999999999999999988765
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.6e-08 Score=79.18 Aligned_cols=188 Identities=19% Similarity=0.203 Sum_probs=150.6
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhH
Q 015687 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (402)
Q Consensus 114 g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (402)
+.+..|..+|.+.| +.++..|+.+|..+...-+.......-...++.++.++.+.|..+.-.|+.+|+.|..+.|--..
T Consensus 33 ~~l~~L~~LL~dkD-~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDD-ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 35888999998888 89999999999999886444444444346899999999999999999999999999988775444
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 273 (402)
.+.. ....+..++ ..++.-+...++..+.-+- + ......++..+..++.+.|..+...++.++.+++..+.
T Consensus 112 ~y~K--l~~aL~dli-k~~~~il~~eaae~Lgklk---v---~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 112 TFLK--AAKTLVSLL-ESPDDMMRIETIDVLSKLQ---P---LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHH--HHHHHHHHT-TSCCHHHHHHHHHHHHHCC---B---SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHH--HHHHHHHHh-cCCCchHHHHHHHHhCcCC---c---ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 4444 677888888 5888889999999998881 1 12235677888899999999999999999999986544
Q ss_pred HHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 015687 274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 314 (402)
Q Consensus 274 ~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~ 314 (402)
+. -+-.+++.-+-.+|+++++.+++.|+..+-.+.+..
T Consensus 183 D~---~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 183 DS---GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp SC---CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred CH---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 22 011357788889999999999999999999998753
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.85 E-value=3.3e-10 Score=87.67 Aligned_cols=121 Identities=18% Similarity=0.167 Sum_probs=93.7
Q ss_pred hchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 015687 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 319 (402)
Q Consensus 240 ~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~ 319 (402)
...++.+..+|.++++.++..++++|+.+... .++.|+..|.++++.+|..|+++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H----
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H----
Confidence 56678899999999999999999999876431 15788999999999999999999999863 2
Q ss_pred HHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 320 ~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
..++.|...+.++ ++.||..|+|+|+++.. ++ .++.|+.++.++++.|+..|+++|.+|
T Consensus 73 -----~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~--~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 -----RAVEPLIKLLEDD-SGFVRSGAARSLEQIGG--ER---------VRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS--HH---------HHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--HH---------HHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 2478899999888 99999999999999852 22 578889999999999999999998754
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.81 E-value=7.8e-08 Score=82.83 Aligned_cols=194 Identities=10% Similarity=0.118 Sum_probs=142.2
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHH-hhCCCchhhHHHHh-cCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCC-CCch-
Q 015687 161 IFVRLLSSPTDDVREQAVWALGN-VAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLF- 236 (402)
Q Consensus 161 ~L~~lL~~~~~~v~~~a~~~L~n-l~~~~~~~~~~~~~-~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~- 236 (402)
.+...+.+.+..-|..|+..|+. ++.+.+.......+ ..++..|...+..+.+..++..++.++..++.+-. ..-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35567788999999999999999 87544332100001 12455666666567788899999999999997644 3333
Q ss_pred hhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-
Q 015687 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD- 315 (402)
Q Consensus 237 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~- 315 (402)
.+...++|.++..+.+..+.|+..+..++..++...+.....-.-..+++.|...|.+.++.++..++.+|+.++....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 5667899999999998889999988888887775331100000001256888999999999999999999999996544
Q ss_pred --HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 316 --MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 316 --~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
......+...++|.|.+++.++ ++.+|..|.-+++.++.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 3333344358999999999998 99999999999999875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.80 E-value=7.6e-07 Score=89.84 Aligned_cols=304 Identities=13% Similarity=0.144 Sum_probs=218.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCc--
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE-- 148 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~-- 148 (402)
..+..+++.+...+......++..+..++.++ .. ...+..+++..|.+.+.+.. .. +.|+.++..|+.....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~ 87 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGN-II--EHDVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSP 87 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSS-CS--SSSCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhcc-cc--ccccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCC
Confidence 34566777777655666678888888887643 11 11222367888888887765 23 8899999999954321
Q ss_pred chHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhh
Q 015687 149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~ 228 (402)
..+.++ .+.+|.++..+.+....++..|..++..++..-+...- ..+++.|+..+.....-+.+..++.++..|+
T Consensus 88 ~~e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~ 162 (986)
T 2iw3_A 88 SVEPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMV 162 (986)
T ss_dssp TTHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred Ccccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 222222 26789999998888899999999888888755443211 2368899999955557788999999999999
Q ss_pred hCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC--ChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHH
Q 015687 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG--TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306 (402)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~--~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~ 306 (402)
...|..-...+..++|.+...+.+..++|...+..++..+|.. +.+. ...+|.|+..+.+++. ...++..
T Consensus 163 ~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~ 234 (986)
T 2iw3_A 163 DAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHL 234 (986)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHH
T ss_pred HHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHH
Confidence 8754333445588999999999999999999999988888742 2222 2467999999988754 4566777
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHhcc-CCHH
Q 015687 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLN-AEFE 383 (402)
Q Consensus 307 l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~-~~~~ 383 (402)
|+..+.-..-... .+. =++|.|.+-|... ...+++.++-++-|+|. .+|.....++.. ++|.|-...+. .+|+
T Consensus 235 l~~~tfv~~v~~~-~l~-~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~-l~p~~~~~~~~~~~pe 310 (986)
T 2iw3_A 235 LGATTFVAEVTPA-TLS-IMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGK-LLPGLKSNFATIADPE 310 (986)
T ss_dssp HTTCCCCSCCCHH-HHH-HHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTT-THHHHHHHTTTCCSHH
T ss_pred hhcCeeEeeecch-hHH-HHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhhh-hhhHHHHHhhccCCHH
Confidence 7666543321111 111 2468888888887 88899999999999997 788888777754 88888887765 7899
Q ss_pred HHHHHHHHHHHhhc
Q 015687 384 IKKEAAWAISNATS 397 (402)
Q Consensus 384 v~~~a~~aL~nl~~ 397 (402)
+|..|..|+..|..
T Consensus 311 ~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 311 AREVTLRALKTLRR 324 (986)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99888888877743
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.70 E-value=2.8e-09 Score=82.41 Aligned_cols=121 Identities=18% Similarity=0.184 Sum_probs=93.1
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh
Q 015687 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (402)
Q Consensus 113 ~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (402)
...++.++.+|++++ +.++..|+++|+.+... .++.|+.+|.++++.+|..|+++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~--- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E--- 72 (131)
T ss_dssp ----------CCSSC-CCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence 345788999999888 78999999998876431 36899999999999999999999999852 1
Q ss_pred HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHh
Q 015687 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 268 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l 268 (402)
..++.|+..+ .++++.++..++|+|..+.. ...++.|..++.++++.++..++++|..+
T Consensus 73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 2478888888 77889999999999998862 36788999999999999999999988653
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=98.69 E-value=8.9e-06 Score=83.87 Aligned_cols=296 Identities=11% Similarity=0.093 Sum_probs=173.9
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHH-HhhcCCCCHHHHHHHHHHHHHhhcCC--Cc---chHHHHh
Q 015687 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFI-EFLSRDDFPQLQFEAAWALTNIASGT--SE---NTRVVID 155 (402)
Q Consensus 82 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~~~~~~a~~~L~~l~~~~--~~---~~~~~~~ 155 (402)
+++++....++.++...++ --+...+++.++++.+. .+|.. ++++..|+.||..+.... .+ ....+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 3566777778888888875 35677788899999999 88853 789999999999998732 12 1111111
Q ss_pred C--CchHHH--------------HHhhCCCCHHHHHHHHHHHHHhhC-------CCchhhHHHHhcCChHHHHHHhccch
Q 015687 156 H--GAVPIF--------------VRLLSSPTDDVREQAVWALGNVAG-------DSPKCRDLVLSNGALMPLLAQFNEHA 212 (402)
Q Consensus 156 ~--g~i~~L--------------~~lL~~~~~~v~~~a~~~L~nl~~-------~~~~~~~~~~~~g~i~~L~~~l~~~~ 212 (402)
. +.++.+ ..--...+.+..+..+..+..+.. ..+..+..+. .++..|+.+- ..+
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~ 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence 0 111111 111122345666666666654432 1122222221 1233444433 456
Q ss_pred hhHHHHHHHHHHHHhhhCCC-C-Cchhh----hhchHHHHHHhccCCC--------------------hh-HH----HHH
Q 015687 213 KLSMLRNATWTLSNFCRGKP-Q-PLFEQ----TRPALPALERLIHSND--------------------DE-VL----TDA 261 (402)
Q Consensus 213 ~~~~~~~a~~~L~~l~~~~~-~-~~~~~----~~~~l~~L~~lL~~~~--------------------~~-v~----~~a 261 (402)
+.++...++..+..+...-- . ..... ...+++.++.-+..++ ++ .. .++
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 78888888888777776421 1 11122 2344555555443321 00 11 123
Q ss_pred HHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC---
Q 015687 262 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ--- 336 (402)
Q Consensus 262 ~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~--- 336 (402)
+..+.++.. ++..+. +++.+...+.+ .++..++.+++++|.++.+..+....-.-..+++.|+.++.+
T Consensus 437 L~~l~~l~~--~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~ 509 (1023)
T 4hat_C 437 LVYLTHLNV--IDTEEI-----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG 509 (1023)
T ss_dssp HHHHHHHCH--HHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHhccCH--HHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence 322322221 122221 23444444443 578999999999999998765442322333678888888864
Q ss_pred --CCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 015687 337 --NYKKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 337 --~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 399 (402)
+ ...++..++|+++.++. .+++.... ++..|+..+.+++++++..||+++.+|+..+
T Consensus 510 ~d~-k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c 571 (1023)
T 4hat_C 510 KDN-KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1023)
T ss_dssp HHH-HHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred Ccc-hHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 2 45677789999998875 34554333 5667888888788999999999999998753
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=98.67 E-value=6.4e-06 Score=75.70 Aligned_cols=320 Identities=13% Similarity=0.097 Sum_probs=194.1
Q ss_pred cHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCC---ch-hHHhhcC-cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcC
Q 015687 72 SLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSP---PI-NEVIQSG-VVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145 (402)
Q Consensus 72 ~i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~---~~-~~~~~~g-~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~ 145 (402)
....+++.|.. ...+.....+..+..++..+ + .. ..+.+.. ....+.....+.+++-.+..+..+++.++..
T Consensus 78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~--~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSD--KYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCS--SSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcC--cchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 45778888884 66888888889999998753 3 22 2333322 2222333222344245556666666666543
Q ss_pred CCcchHHHHhCCchH--HHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhhHHHHhcC--ChHHHHHHhcc----------
Q 015687 146 TSENTRVVIDHGAVP--IFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFNE---------- 210 (402)
Q Consensus 146 ~~~~~~~~~~~g~i~--~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~~l~~---------- 210 (402)
.+...+.+- ..+. -++..|.+ ++...+..++.+|..+....+ +|..+.+.+ .+++++.++..
T Consensus 156 ~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 156 GLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp TTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred CCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 333211111 1222 34444544 345556678888888887654 788877643 36666654421
Q ss_pred ------chhhHHHHHHHHHHHHhhhCCCCCchhhhhc--hHHHHHHhccC-CChhHHHHHHHHHHHhccCCh----HHHH
Q 015687 211 ------HAKLSMLRNATWTLSNFCRGKPQPLFEQTRP--ALPALERLIHS-NDDEVLTDACWALSYLSDGTN----DKIQ 277 (402)
Q Consensus 211 ------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~l~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~----~~~~ 277 (402)
....+++..++.+++-|+..++......... .++.|+.+++. ..+++..-++.++.|+..... ..+.
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred ccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 1146778899999999987743111111122 23566666654 468899999999999987652 2222
Q ss_pred -HHHHhCcHHHHHHhcCC---CChhhHHHHHHHHHHhh----------------------cCChHHHH-HHH--------
Q 015687 278 -AVIEAGVCPRLVELLRH---PSPSVLIPALRTVGNIV----------------------TGDDMQTQ-CII-------- 322 (402)
Q Consensus 278 -~~~~~~~i~~L~~~L~~---~~~~v~~~a~~~l~nl~----------------------~~~~~~~~-~i~-------- 322 (402)
.++..++ .+++..|.. .|+++.... ..+.... .-+|.... .+.
T Consensus 313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl-~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~ 390 (480)
T 1ho8_A 313 QLLLLGNA-LPTVQSLSERKYSDEELRQDI-SNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK 390 (480)
T ss_dssp HHHHHHCH-HHHHHHHHSSCCSSHHHHHHH-HHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred HHHHHccc-hHHHHHHhhCCCCcHHHHHHH-HHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence 2333444 455666532 344433221 1111111 11111111 111
Q ss_pred --hCCChHHHHHHhcC---------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHH
Q 015687 323 --NHQALPCLLDLLTQ---------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 391 (402)
Q Consensus 323 --~~~~l~~L~~ll~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 391 (402)
+..++..|+++|.+ +.++.+..-||.=++.++.+.|..+..+-+.|+-..+++++.++|++|+.+|+.|
T Consensus 391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~a 470 (480)
T 1ho8_A 391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKA 470 (480)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 12467889999973 2278899999999999999888887777788999999999999999999999999
Q ss_pred HHHhhcC
Q 015687 392 ISNATSG 398 (402)
Q Consensus 392 L~nl~~~ 398 (402)
+..+..+
T Consensus 471 vQklm~~ 477 (480)
T 1ho8_A 471 TQAIIGY 477 (480)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9887653
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.1e-06 Score=76.31 Aligned_cols=234 Identities=14% Similarity=0.120 Sum_probs=158.1
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCC--chHHHHHhhC----C-------------CCHHHHHHHH
Q 015687 118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLS----S-------------PTDDVREQAV 178 (402)
Q Consensus 118 ~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~----~-------------~~~~v~~~a~ 178 (402)
.++..|........+..++.+|..+... ++.|..+.+.+ .++.++.++. + ....++-+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 4566666532256678899999999885 88888887653 3666654332 1 1356788889
Q ss_pred HHHHHhhCCCchhhHHHHhcCCh--HHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchh-----hh-hchHHHHHHhc
Q 015687 179 WALGNVAGDSPKCRDLVLSNGAL--MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE-----QT-RPALPALERLI 250 (402)
Q Consensus 179 ~~L~nl~~~~~~~~~~~~~~g~i--~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-----~~-~~~l~~L~~lL 250 (402)
.+++-++.+.+ ..+.+...++. ..|+.++.....+.+.+-++.+|.|+....+..... .. .++ +.++..|
T Consensus 250 l~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L 327 (480)
T 1ho8_A 250 LLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSL 327 (480)
T ss_dssp HHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHH
T ss_pred HHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHH
Confidence 99998887766 44555555543 567777867778999999999999999875322221 11 234 4455555
Q ss_pred cC---CChhHHHHHHHHHHHhcc---------------------CChHH-HHHHHH----------hCcHHHHHHhcCC-
Q 015687 251 HS---NDDEVLTDACWALSYLSD---------------------GTNDK-IQAVIE----------AGVCPRLVELLRH- 294 (402)
Q Consensus 251 ~~---~~~~v~~~a~~~l~~l~~---------------------~~~~~-~~~~~~----------~~~i~~L~~~L~~- 294 (402)
.. +|+++..+.-.....|-. .++.. -+.+.. ..++..|+.+|.+
T Consensus 328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 33 577766554332222211 11100 001111 1357788888863
Q ss_pred ---------CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 295 ---------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 295 ---------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
.++.+..-||.=||.++...|..+..+-+.|+-..++.++.++ +++||.+|..++.-+..
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 3577888899999999999998888777889999999999999 99999999999987754
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.39 E-value=5.4e-05 Score=78.34 Aligned_cols=305 Identities=10% Similarity=0.060 Sum_probs=163.0
Q ss_pred CCCHHHHHHHHHHHHHHhccCC--CCchhHH-hhcCcHHH----HHHhhcCC--CCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 82 SDDRNIQLDATTQFRKLLSIER--SPPINEV-IQSGVVPR----FIEFLSRD--DFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 82 s~~~~~~~~a~~~l~~l~s~~~--~~~~~~~-~~~g~i~~----L~~lL~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
+++...+..|+.++..++.+.. ..+.... ....+.+. ++..|.++ .++.+|..|+|+++.++..- ...
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~- 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKA- 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHH-
Confidence 5667788889999988864320 1111100 00012222 33344555 13899999999999998752 122
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------chh-hHHHHh--cCChHHHHHHhccc----hhhHHHH
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-------PKC-RDLVLS--NGALMPLLAQFNEH----AKLSMLR 218 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-------~~~-~~~~~~--~g~i~~L~~~l~~~----~~~~~~~ 218 (402)
.. ..+++.++..|.+++..|+..|+++|.+++... +.+ +..+.. ..+++.|+.++... .+.....
T Consensus 493 ~l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 493 QL-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp HH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred HH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 22 247888999888889999999999999998631 121 222211 11344445555332 1111234
Q ss_pred HHHHHHHHhhhCCCCCchhhhhchHHHHHHhcc----C-CChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhc
Q 015687 219 NATWTLSNFCRGKPQPLFEQTRPALPALERLIH----S-NDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL 292 (402)
Q Consensus 219 ~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~----~-~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~~L 292 (402)
.+..++..++...+..-..+...+++.+...+. + +++.....++.+++.++.. .++... -+...+++.+...|
T Consensus 572 ~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~iL 650 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTVF 650 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHH
Confidence 555666555543322223344455555555542 2 3567777788888888765 222222 23344667777777
Q ss_pred CCCChhhHHHHHHHHHHhhcCC----h---HHHHHHH------hCCCh---------------------HHHH----HHh
Q 015687 293 RHPSPSVLIPALRTVGNIVTGD----D---MQTQCII------NHQAL---------------------PCLL----DLL 334 (402)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~----~---~~~~~i~------~~~~l---------------------~~L~----~ll 334 (402)
..........++.+++.+.... + .....+. ..|.+ +.+. +++
T Consensus 651 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~ 730 (960)
T 1wa5_C 651 SEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLI 730 (960)
T ss_dssp HTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHH
T ss_pred HhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCCCchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 6555555656666655554211 0 0000000 00111 2222 233
Q ss_pred cCCCchhHHHHHHHHHHHHhcCCHHH-HHHHHHcCCHHHHHHHhccC-CHHHHHHHHHHHHHh
Q 015687 335 TQNYKKSIKKEACWTISNITAGNVNQ-IQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNA 395 (402)
Q Consensus 335 ~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl 395 (402)
.+. . ....++++++.++...+.. ....+.. +++.++..+... ..++++..+..++.+
T Consensus 731 ~~~-~--~~~~a~~ll~~i~~~~~~~~~~~yl~~-i~~~l~~~l~~~~~~~~~~~~l~~~~~~ 789 (960)
T 1wa5_C 731 ASK-A--YEVHGFDLLEHIMLLIDMNRLRPYIKQ-IAVLLLQRLQNSKTERYVKKLTVFFGLI 789 (960)
T ss_dssp TCT-T--THHHHHHHHHHHHHHSCHHHHGGGHHH-HHHHHHHGGGSSCCHHHHHHHHHHHHHH
T ss_pred CCC-c--ccchHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHhhCCcHhHHHHHHHHHHHH
Confidence 333 2 2478999999888744444 4444443 666777777654 456665555555444
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-05 Score=70.06 Aligned_cols=157 Identities=14% Similarity=0.105 Sum_probs=126.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
...+++.|++++......++..|..+++.+ .....+++..+++..|+......+ ...+..++.+|.++... ......
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~~-v~Gm~g 196 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLMLF-VDGMLG 196 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHhc-cccccc
Confidence 467888999888889999999999977754 788899999999999999999887 89999999999999986 444444
Q ss_pred HH-hCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhc--------C--ChHHHHHHhc--cchhhHHHHH
Q 015687 153 VI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN--------G--ALMPLLAQFN--EHAKLSMLRN 219 (402)
Q Consensus 153 ~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~--------g--~i~~L~~~l~--~~~~~~~~~~ 219 (402)
++ ....|..+..++.+.+..|...|+..|..++..++.....+.+. | .+..++.+|. ...|.+++.+
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 44 44678889999999999999999999999987776444443321 1 3778899994 2568889999
Q ss_pred HHHHHHHhhhCCC
Q 015687 220 ATWTLSNFCRGKP 232 (402)
Q Consensus 220 a~~~L~~l~~~~~ 232 (402)
+...+-.+....|
T Consensus 277 amtLIN~lL~~ap 289 (339)
T 3dad_A 277 TVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHhcCC
Confidence 8888877776644
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00012 Score=75.85 Aligned_cols=257 Identities=9% Similarity=0.049 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhC------CCCHHHHHHHHHHHHHhhCCCchhhHHHH---h-cC
Q 015687 130 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS------SPTDDVREQAVWALGNVAGDSPKCRDLVL---S-NG 199 (402)
Q Consensus 130 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~---~-~g 199 (402)
..+..|..+|..++...+ +.++. .+++.+...+. +++...++.|+.+++.++........... . ..
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 456677777777776422 22221 23444444454 56778999999999999854211100000 0 01
Q ss_pred ChH----HHHHHhccch---hhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCC
Q 015687 200 ALM----PLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 200 ~i~----~L~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~ 272 (402)
..+ .++..+ .++ ++-++..++|+++.++..- .......+++.++..|.+++..|+..|++++.+++...
T Consensus 452 l~~~l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 452 VVDFFTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp HHHHHHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence 112 223334 333 7889999999999999874 23456788999999998888999999999999988631
Q ss_pred h-----------HHHHHHHHhCcHHHHHHhcCCCC-----hhhHHHHHHHHHHhhcCCh----HHHHHHHhCCChHHHHH
Q 015687 273 N-----------DKIQAVIEAGVCPRLVELLRHPS-----PSVLIPALRTVGNIVTGDD----MQTQCIINHQALPCLLD 332 (402)
Q Consensus 273 ~-----------~~~~~~~~~~~i~~L~~~L~~~~-----~~v~~~a~~~l~nl~~~~~----~~~~~i~~~~~l~~L~~ 332 (402)
+ +.....+ ..+++.|..++.... ......++.+|+.++.... .+...++. .++..+..
T Consensus 528 ~~~~~~~~~~~~~~l~p~l-~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~-~L~~~l~~ 605 (960)
T 1wa5_C 528 ESNTSPAFIFHKEDISNST-EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLA-QFIEIVTI 605 (960)
T ss_dssp SCSSSCCBSSCGGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHH-HHHHHHHH
T ss_pred cccccccccccHHHhhhhH-HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHH
Confidence 1 1111111 135566666665531 1133566667766654211 12222221 12222222
Q ss_pred HhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 333 LLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 333 ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
..+++.++..+..++-+++.++.. .++....+.+ .++|.+..+|.....+....+...+..+..
T Consensus 606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~-~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD-SMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHH-HHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHH-HHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 233443667777788888888864 4554444444 378999999987666777777777776654
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00079 Score=70.30 Aligned_cols=297 Identities=11% Similarity=0.106 Sum_probs=165.0
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHH-hhcCCCCHHHHHHHHHHHHHhhcCCC-cc----hHHHHh-
Q 015687 83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIE-FLSRDDFPQLQFEAAWALTNIASGTS-EN----TRVVID- 155 (402)
Q Consensus 83 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~~~~~~a~~~L~~l~~~~~-~~----~~~~~~- 155 (402)
++..++..++.++..+++ -.+...+.+..+++.+.+ ++. + ++++..|+.||..+..... .. ...+..
T Consensus 207 ~~~~~~~~aL~~l~~~l~---wi~~~~~~~~~ll~~l~~~~l~--~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l 280 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh---hCCHHHHhhhhHHHHHHHHhCC--C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence 456777788888887764 233445666778888874 443 4 7999999999999987521 11 111111
Q ss_pred -CCchHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhC-------CCchhhHHHHhcCChHHHHHHhccchh
Q 015687 156 -HGAVPIFVR-LL-------------SSPTDDVREQAVWALGNVAG-------DSPKCRDLVLSNGALMPLLAQFNEHAK 213 (402)
Q Consensus 156 -~g~i~~L~~-lL-------------~~~~~~v~~~a~~~L~nl~~-------~~~~~~~~~~~~g~i~~L~~~l~~~~~ 213 (402)
.+++..+.. ++ .+.+.+.....+..+..+.. ..+..+..+ ..+++.++... ..++
T Consensus 281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d 357 (1049)
T 3m1i_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEE 357 (1049)
T ss_dssp HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSC
T ss_pred HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCc
Confidence 122222222 11 12344444455555543321 111122222 12455555554 4557
Q ss_pred hHHHHHHHHHHHHhhh----CCCCC--chhhhhchHHHHHHhccCC-------------------Ch---hHHHHHHHHH
Q 015687 214 LSMLRNATWTLSNFCR----GKPQP--LFEQTRPALPALERLIHSN-------------------DD---EVLTDACWAL 265 (402)
Q Consensus 214 ~~~~~~a~~~L~~l~~----~~~~~--~~~~~~~~l~~L~~lL~~~-------------------~~---~v~~~a~~~l 265 (402)
.++...++..+..+++ ..... .......+++.++..+..+ |. ..+..+..+|
T Consensus 358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L 437 (1049)
T 3m1i_C 358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL 437 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence 7888888888888877 32111 1123355566666655321 00 1222344455
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC-----CC
Q 015687 266 SYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-----NY 338 (402)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~i~~L~~~L~--~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~-----~~ 338 (402)
..++......+- .-+.+.+-..+. +.++..++.+++++|.++.+.......-.-..+++.+..+... +
T Consensus 438 ~~l~~~~~~~~l----~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~- 512 (1049)
T 3m1i_C 438 VYLTHLNVIDTE----EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN- 512 (1049)
T ss_dssp HHHHHHCHHHHH----HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-
T ss_pred HHHHccCHHHHH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-
Confidence 555432221111 112344444454 3578889999999999986544321111111344455554332 2
Q ss_pred chhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 339 KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 339 ~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
.+.++..++|+++.++. .+++.... +++.|+..+.++++.|+..|++++.+++..
T Consensus 513 ~~~v~~~~~~~lgry~~~~~~~~~~l~~-----vl~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 513 KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 45566679999998875 23333222 577788888888999999999999999864
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.15 E-value=5.2e-05 Score=78.62 Aligned_cols=302 Identities=10% Similarity=0.040 Sum_probs=170.2
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHh-------hcCCCC--HHHHHHHHHHHHHhhcCCCcch---
Q 015687 83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEF-------LSRDDF--PQLQFEAAWALTNIASGTSENT--- 150 (402)
Q Consensus 83 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~l-------L~~~~~--~~~~~~a~~~L~~l~~~~~~~~--- 150 (402)
++++.+..|+.++..+++..........+. .+++.++.+ +...+. ++.....+..+..++.......
T Consensus 256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 334 (971)
T 2x1g_F 256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG 334 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999987531111111111 123443332 223331 2666666777776664212110
Q ss_pred ---------HHHHhCCchHHHHHhhCC-----CCHHHHHHHHHHHHHhhCC---------CchhhHHHHh--cCChHHHH
Q 015687 151 ---------RVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGD---------SPKCRDLVLS--NGALMPLL 205 (402)
Q Consensus 151 ---------~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~---------~~~~~~~~~~--~g~i~~L~ 205 (402)
..+. ..++.++.+... .++++...+++.+..++.+ .+.....+.. ...++.++
T Consensus 335 ~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 412 (971)
T 2x1g_F 335 ITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV 412 (971)
T ss_dssp HHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 1111 345566665533 4778899999998887641 1111111111 12344444
Q ss_pred HHhccchh--------------hHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccC-----CChhHHHHHHHHHH
Q 015687 206 AQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-----NDDEVLTDACWALS 266 (402)
Q Consensus 206 ~~l~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-----~~~~v~~~a~~~l~ 266 (402)
..+...++ ...+..+..++..++...+ ......+++.+...+.+ .+...++.++.+++
T Consensus 413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~ 489 (971)
T 2x1g_F 413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ 489 (971)
T ss_dssp HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence 44421111 1355667777777775433 23334444555555543 56778999999999
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHH
Q 015687 267 YLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 345 (402)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~i~~L~~~L~-~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~ 345 (402)
.++.+........+. .+++.+..+.. +..+.++..+++++|.++..-....+ .+. .+++.|+..|+ +.++..
T Consensus 490 ~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l~-~vl~~l~~~l~----~~v~~~ 562 (971)
T 2x1g_F 490 SVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YIP-PAINLLVRGLN----SSMSAQ 562 (971)
T ss_dssp HTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHH-HHHHHHHHHHH----SSCHHH
T ss_pred HHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HHH-HHHHHHHHHhC----hHHHHH
Confidence 998775533211111 12332222222 34788999999999999853221111 111 34566666662 679999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHhhcC
Q 015687 346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 346 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~ 398 (402)
|++++.+++......+...++. ++..|..++.. .+.+.+..+..+++.++..
T Consensus 563 A~~al~~l~~~~~~~l~p~~~~-ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 563 ATLGLKELCRDCQLQLKPYADP-LLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccccHHH-HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 9999999998666666665554 77888888887 3578899999999888753
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=98.12 E-value=2e-05 Score=81.07 Aligned_cols=304 Identities=11% Similarity=0.014 Sum_probs=167.8
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCc--chHHHHhCCc
Q 015687 81 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE--NTRVVIDHGA 158 (402)
Q Consensus 81 ~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~g~ 158 (402)
.+.++.....++.++...++ -.+...++..++++.+.++|.+ ++++..|+.||..|...... ....++..=.
T Consensus 203 ~~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~ 276 (980)
T 3ibv_A 203 NAKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILN 276 (980)
T ss_dssp HTTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Confidence 34778888899999999985 3566777788899999999865 78999999999999875433 1122222100
Q ss_pred hHHHHHhhC--CCCHHHHHHHHHHHHHhh------CCCc-----hhhHH--HHhcCChHHHHHHhccchhhHHHHHHHHH
Q 015687 159 VPIFVRLLS--SPTDDVREQAVWALGNVA------GDSP-----KCRDL--VLSNGALMPLLAQFNEHAKLSMLRNATWT 223 (402)
Q Consensus 159 i~~L~~lL~--~~~~~v~~~a~~~L~nl~------~~~~-----~~~~~--~~~~g~i~~L~~~l~~~~~~~~~~~a~~~ 223 (402)
+...+.-+. ..|.+..+..+..+..++ ...+ +.+.. -.-.+.++.++.++ .+++.++...++.+
T Consensus 277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~F 355 (980)
T 3ibv_A 277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPF 355 (980)
T ss_dssp HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHH
Confidence 111122122 467776655554443332 1111 10100 11124777778887 55566777767666
Q ss_pred HHHhhhCC---CC----Cc--hhhhhchHHHHHHhccCC-----C-----------hhHHHHHHHHHHHh-ccCChHH-H
Q 015687 224 LSNFCRGK---PQ----PL--FEQTRPALPALERLIHSN-----D-----------DEVLTDACWALSYL-SDGTNDK-I 276 (402)
Q Consensus 224 L~~l~~~~---~~----~~--~~~~~~~l~~L~~lL~~~-----~-----------~~v~~~a~~~l~~l-~~~~~~~-~ 276 (402)
+..+.... +. .. ......+++.++.-+..+ + .+.|.... .+... +.-.++. .
T Consensus 356 w~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l 434 (980)
T 3ibv_A 356 LSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFS 434 (980)
T ss_dssp HHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHH
Confidence 66655321 11 11 123345555555555321 1 12344444 33222 2212211 1
Q ss_pred HHHHHhCcHHHHHHhcC---CCChhhHHHHHHHHHHhhcCChHHHHHHH-h----CCChHHHHHHhc-----CCCchhHH
Q 015687 277 QAVIEAGVCPRLVELLR---HPSPSVLIPALRTVGNIVTGDDMQTQCII-N----HQALPCLLDLLT-----QNYKKSIK 343 (402)
Q Consensus 277 ~~~~~~~~i~~L~~~L~---~~~~~v~~~a~~~l~nl~~~~~~~~~~i~-~----~~~l~~L~~ll~-----~~~~~~v~ 343 (402)
..+.+ -+.+.+...+. +.++..++.++.+++.++.+-......+. . ..+++.+..+++ .+ .|.|+
T Consensus 435 ~~~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~ 512 (980)
T 3ibv_A 435 SYMYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQ 512 (980)
T ss_dssp HHHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHH
T ss_pred HHHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHH
Confidence 11111 11222333342 34578899999999999886442111110 0 123455556654 44 78999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh------ccCCHHHHHHHHHHHHHhhcCCC
Q 015687 344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL------LNAEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 344 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll------~~~~~~v~~~a~~aL~nl~~~~~ 400 (402)
..++|+++..+.--.. ....++.++..+ .+++.+|+..|+.++.+++..+.
T Consensus 513 ~~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 513 LLYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 9999999998862111 112344444443 44678899999999999987543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0011 Score=67.18 Aligned_cols=265 Identities=11% Similarity=0.093 Sum_probs=176.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCC-CCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIER-SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
.+..+.+.+...... ..|+..+..++.... .++... .--+.+|.+++.+.+.. ..++..|..++..++..-+...
T Consensus 55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~dk~-~~v~~aa~~~~~~~~~~~~~~a 130 (986)
T 2iw3_A 55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEP-YIVQLVPAICTNAGNKD-KEIQSVASETLISIVNAVNPVA 130 (986)
T ss_dssp HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHH-HHHTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCccc-chHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhCCHHH
Confidence 345555555543222 777888888764331 233332 22257899999988877 7899888888777766333322
Q ss_pred HHHHhCCchHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 151 RVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
- ..++|.|+..|.+. ....+..|+.++..++...+..-...+ ..++|.+...+ -+..+++...+..++..+|.
T Consensus 131 ~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~-~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 131 I----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM-PELIPVLSETM-WDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp H----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH-HHHHHHHHHHT-TCSSHHHHHHHHHHHHHHGG
T ss_pred H----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc-cchhcchHhhc-ccCcHHHHHHHHHHHHHHHh
Confidence 2 24689999988754 688999999999999976553211111 12566666666 67788999999999999997
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~n 309 (402)
--.+.+ +.+.+|.|++.+.+++. ...++..|+.-+.-.......+ +=++|.|..-|......+...++-++.|
T Consensus 205 ~~~n~d---~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n 277 (986)
T 2iw3_A 205 TVDNKD---IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIIDN 277 (986)
T ss_dssp GCCCTT---TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred cCCCcc---hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEcc
Confidence 654433 36789999999977743 4455555555443221111111 0135777777888888888999999999
Q ss_pred hhc--CChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 015687 310 IVT--GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (402)
Q Consensus 310 l~~--~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 354 (402)
+|. .++.....+ -..++|-+-+....-.+|++|.-|-.++..|.
T Consensus 278 ~~~lv~~~~~~~~f-~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 278 MCKLVEDPQVIAPF-LGKLLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHTTCCCHHHHHHH-HTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred hhhhcCCHHHHhhh-hhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 996 344444433 45888888888877668999988877777663
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0037 Score=64.54 Aligned_cols=297 Identities=12% Similarity=0.130 Sum_probs=165.6
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHH-HHhhcCCCCHHHHHHHHHHHHHhhcCCC-cchHHHHh--CC
Q 015687 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF-IEFLSRDDFPQLQFEAAWALTNIASGTS-ENTRVVID--HG 157 (402)
Q Consensus 82 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~--~g 157 (402)
+++++....++.++..+++ --+...+++.++++.+ ..+|. + +.++..|+.||+.|.+... +....+.. .+
T Consensus 218 ~~~~~lv~~~L~~L~~~~s---WI~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLN---WIPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH---hcCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 4677888888899999875 3467788889999988 47764 3 7899999999999887422 22222211 01
Q ss_pred chHHHHHhh-------------CCCCHHHHHHHHHHHHHhhCC-------CchhhHHHHhcCChHHHHHHhccchhhHHH
Q 015687 158 AVPIFVRLL-------------SSPTDDVREQAVWALGNVAGD-------SPKCRDLVLSNGALMPLLAQFNEHAKLSML 217 (402)
Q Consensus 158 ~i~~L~~lL-------------~~~~~~v~~~a~~~L~nl~~~-------~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~ 217 (402)
.+..+..++ .+.+.+....-+..+..+... .|..+..+.. ++..++.+- ..++.++.
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~--~l~~ll~~s-~~~d~ei~ 368 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALME--ALHYMLLVS-EVEETEIF 368 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHT-TCSCHHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHH--HHHHHHHHh-CCCcHHHH
Confidence 222222222 112334444455555544321 1211222111 233344433 55688888
Q ss_pred HHHHHHHHHhhhC----CC-----CC------------chhhhhchH----HHHHHhccCCC------------------
Q 015687 218 RNATWTLSNFCRG----KP-----QP------------LFEQTRPAL----PALERLIHSND------------------ 254 (402)
Q Consensus 218 ~~a~~~L~~l~~~----~~-----~~------------~~~~~~~~l----~~L~~lL~~~~------------------ 254 (402)
+.+...+..|... .+ .+ ......+++ ..++.-+..++
T Consensus 369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~ 448 (1073)
T 3gjx_A 369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMK 448 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECS
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHh
Confidence 8887776666542 11 00 011112333 33333332211
Q ss_pred --h-----hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CChhhHHHHHHHHHHhhcCChHHHH-HHHhC
Q 015687 255 --D-----EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQ-CIINH 324 (402)
Q Consensus 255 --~-----~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~nl~~~~~~~~~-~i~~~ 324 (402)
. ++..+++..+.++. .++.... ..+.+...+.. .++...+.++|++|.++..-.+... .++ .
T Consensus 449 d~~~~~ly~~mrd~L~~lt~l~--~~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L-p 520 (1073)
T 3gjx_A 449 DTDSINLYKNMRETLVYLTHLD--YVDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL-V 520 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHC--HHHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-H
T ss_pred hcchHHHHHHHHHHHHHHhcCC--HHHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH-H
Confidence 0 12223332233222 1222221 23445444443 3588899999999999754433222 222 2
Q ss_pred CChHHHHHHhcCCC----chhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 325 QALPCLLDLLTQNY----KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 325 ~~l~~L~~ll~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
.+++.|+.+..++. .+.++...+|+++..+. .+++.... ++..|++.+.+.++.|+..||.|+..++.
T Consensus 521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 56667777765441 23466677899998775 34444433 56788888888999999999999999987
Q ss_pred CCC
Q 015687 398 GGS 400 (402)
Q Consensus 398 ~~~ 400 (402)
.+.
T Consensus 596 ~C~ 598 (1073)
T 3gjx_A 596 KCR 598 (1073)
T ss_dssp HTG
T ss_pred HHH
Confidence 654
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00038 Score=72.16 Aligned_cols=251 Identities=10% Similarity=0.105 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHH
Q 015687 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 205 (402)
Q Consensus 131 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~ 205 (402)
.+..+..+|..++...++. +.. -+++.+...+.+ .+...++.++++++.++....... ...++.++
T Consensus 437 ~R~~~~~~l~~~~~~~~~~---~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~ 507 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLNDY---ILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLM 507 (971)
T ss_dssp HHHHHHHHHHHHHTTCTTH---HHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHH---HHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHH
Confidence 4556666777766543311 111 122333333332 567789999999999987654321 12344444
Q ss_pred HHh---cc-chhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 015687 206 AQF---NE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 281 (402)
Q Consensus 206 ~~l---~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 281 (402)
.++ .. +.++.++..++|+++.++..-.. .......+++.++..| + +.++..|++++.+++..........+
T Consensus 508 ~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~- 582 (971)
T 2x1g_F 508 RVLAEIPYEKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA- 582 (971)
T ss_dssp HHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH-
T ss_pred HHHHhcCccccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH-
Confidence 433 21 24788999999999999976422 1255678888888888 2 78999999999999965543332222
Q ss_pred hCcHHHHHHhcCC--CChhhHHHHHHHHHHhhcCCh-HHHHHHHhCCChHHHHH----HhcCCC-chhHHHHHHHHHHHH
Q 015687 282 AGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLD----LLTQNY-KKSIKKEACWTISNI 353 (402)
Q Consensus 282 ~~~i~~L~~~L~~--~~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~~~l~~L~~----ll~~~~-~~~v~~~a~~~L~nl 353 (402)
..++..+..++.. .+...+..++.+++.++..-+ +.....+. .+++.++. +++... ++.-+.....++..|
T Consensus 583 ~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L 661 (971)
T 2x1g_F 583 DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMI 661 (971)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Confidence 2456667777766 356788899999999986432 22222222 23334443 333321 222344444444444
Q ss_pred hc-----CC-----------HHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHhhc
Q 015687 354 TA-----GN-----------VNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATS 397 (402)
Q Consensus 354 ~~-----~~-----------~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~ 397 (402)
+. +. ++....+. ..+++.+..++.. .+..+.+.++++++.++.
T Consensus 662 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 662 STLFSSLNTDVDEQATDQPIVQPVLLVM-QRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHHHHHHTC-------------CCHHHH-HTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCcCcccccccCCCchHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 32 11 11122222 3488888888865 367999999999998654
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.01 E-value=7.1e-05 Score=65.46 Aligned_cols=154 Identities=15% Similarity=0.125 Sum_probs=120.3
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHH-
Q 015687 244 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII- 322 (402)
Q Consensus 244 ~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~- 322 (402)
..+++-|.+.+...+..++.-|..+...+.+....++..+++..|+....+.+...+..++++++++....+ ...-++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~-Gm~gvvs 199 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVD-GMLGVVA 199 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHH-HHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccc-cccchhC
Confidence 345566677888889999999998665677788999999999999999999999999999999999998644 343444
Q ss_pred hCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------cC--CHHHHHHHhc---cCCHHHHHHHH
Q 015687 323 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--------AG--IIGPLVNLLL---NAEFEIKKEAA 389 (402)
Q Consensus 323 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~~--~i~~L~~ll~---~~~~~v~~~a~ 389 (402)
...++..+..++.+. +..|.+.|...|..++..++.....+.+ .| .++.|+.+|+ +.|.+++..|.
T Consensus 200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 446788899999976 8999999999999998755433333222 11 3789999997 68899999988
Q ss_pred HHHHHhhcCC
Q 015687 390 WAISNATSGG 399 (402)
Q Consensus 390 ~aL~nl~~~~ 399 (402)
..|-.+..++
T Consensus 279 tLIN~lL~~a 288 (339)
T 3dad_A 279 TLINKTLAAL 288 (339)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 8776665544
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00018 Score=74.46 Aligned_cols=306 Identities=11% Similarity=0.071 Sum_probs=166.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHh----h--cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCC
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI----Q--SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~----~--~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~ 147 (402)
+.+++.+ ++++.+..|+.++..+++....+.....+ . .+..+.+.+.+...+ .+.....+..+..++...+
T Consensus 244 ~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~~~~ 320 (963)
T 2x19_B 244 QAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGENHS 320 (963)
T ss_dssp HHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHhH
Confidence 3444444 35667788999999998753111111111 0 011222222334444 4555556666666554211
Q ss_pred c-------chHHHHhCCchHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCC--------chhhHHHHh--cCChHHHH
Q 015687 148 E-------NTRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDS--------PKCRDLVLS--NGALMPLL 205 (402)
Q Consensus 148 ~-------~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~--------~~~~~~~~~--~g~i~~L~ 205 (402)
. ....+. +.++.++.+... .++.+...++..+..++.+. +.....+.. ..+++.++
T Consensus 321 ~~l~~~~~~~~~~~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll 398 (963)
T 2x19_B 321 RALLDQVEHWQSFL--ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLL 398 (963)
T ss_dssp HHHHHCGGGHHHHH--HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCccchHHHH--HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1 011111 355666665554 35556667776666665411 111111110 01233334
Q ss_pred HHhccchh--------------hHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhc----cCCChhHHHHHHHHHHH
Q 015687 206 AQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----HSNDDEVLTDACWALSY 267 (402)
Q Consensus 206 ~~l~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL----~~~~~~v~~~a~~~l~~ 267 (402)
..+....+ .+.+..+..+|..++...+ ......+++.+...+ .+.+...++.++++++.
T Consensus 399 ~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~ 475 (963)
T 2x19_B 399 HKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQS 475 (963)
T ss_dssp HHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHH
T ss_pred HHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 43421111 1234555666666664322 122233444444555 45677889999999999
Q ss_pred hccCChHHHHHHHHhCcHHHHHHhc---CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHH
Q 015687 268 LSDGTNDKIQAVIEAGVCPRLVELL---RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344 (402)
Q Consensus 268 l~~~~~~~~~~~~~~~~i~~L~~~L---~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~ 344 (402)
++.+..+.. ...++.++..+ ..+++.++..+++++|.++..-.... ..+ ..+++.++..|.+ +.|+.
T Consensus 476 i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~~---~~V~~ 545 (963)
T 2x19_B 476 IAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALGN---PELSV 545 (963)
T ss_dssp HTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTTC---GGGHH
T ss_pred HHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhCC---chHHH
Confidence 987644211 12233333332 34578899999999999986322111 223 3788889888853 78999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHhhcC
Q 015687 345 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 345 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~ 398 (402)
.|++++.+++...++.+...++ +++..|..++.. -+.+.+..+..+++.++..
T Consensus 546 ~A~~al~~l~~~~~~~l~p~~~-~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 546 SSVSTLKKICRECKYDLPPYAA-NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp HHHHHHHHHHHHTGGGCTTTHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence 9999999999644333322222 255566666665 3568888889999888753
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00026 Score=65.83 Aligned_cols=230 Identities=13% Similarity=0.078 Sum_probs=118.2
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCc
Q 015687 69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (402)
Q Consensus 69 ~~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 148 (402)
..+-...|+..|-++..+.+.-|+..||.++..... .. |-. ...+ . .-|+++++-++-+ .
T Consensus 172 PfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~-GA------GR~-------~~~N-~---DLAvRLLCVLALD--R 231 (800)
T 3oc3_A 172 VLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDN-GG------DIQ-------IRVD-S---KLFSKIYEILVTD--K 231 (800)
T ss_dssp GGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCC-T---THHHHHHHHHHHB--C
T ss_pred HHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhcc-CC------cee-------cccc-H---HHHHHHHHHHHhc--c
Confidence 344567888889999999999999999999865411 00 100 1111 1 3444555544442 1
Q ss_pred chHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhh
Q 015687 149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~ 228 (402)
+.+.+-+ . --..||+.|+.+||.+ ..-+.- ..++..++..+ ....-+++..++-.|.++
T Consensus 232 FGDYVSD-q-----------VVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL- 290 (800)
T 3oc3_A 232 FNDFVDD-R-----------TVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL- 290 (800)
T ss_dssp CBBCSSS-S-----------CBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT-
T ss_pred ccccccC-e-----------eeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH-
Confidence 1111111 1 1123666666666666 443321 22333333322 334456666666666666
Q ss_pred hCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC--hhhHHHHHHH
Q 015687 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS--PSVLIPALRT 306 (402)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~--~~v~~~a~~~ 306 (402)
.+--. . ..++++.++..|.+.|++|+..|+.+|.-++ .. +.+.. ++..+...|.+-+ ..-....+..
T Consensus 291 ~DLL~-~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p-~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdL 359 (800)
T 3oc3_A 291 KEFVE-D---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-IT-DSLDL-----VLEKCWKNIESEELISVSKTSNLSL 359 (800)
T ss_dssp GGGCC-C---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CS-STHHH-----HHHHHHHHHHTCCSCCTTHHHHHHH
T ss_pred HHHHH-H---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-ch-hhHHH-----HHHHHHHHhhhhcccchhhHHHHHH
Confidence 11110 0 4556666666666667777777777766666 21 12221 2333444443221 1223344555
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 015687 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (402)
Q Consensus 307 l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 354 (402)
|+.++..+.. .-.+...+|.|..++.++ -+.||..+..+|..+.
T Consensus 360 LAkL~s~p~~---a~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 360 LTKIYRENPE---LSIPPERLKDIFPCFTSP-VPEVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHCTT---CCCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTTCC
T ss_pred HHHHHcCCcc---cccChHHHHHHHhhhcCC-cHHHHHHHHHHHHHHH
Confidence 5555554321 011235666777777776 6677777766666555
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0028 Score=65.46 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=95.2
Q ss_pred hHHHHHHhccC--CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-----CChhhHHHHHHHHHHhhcCC
Q 015687 242 ALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-----PSPSVLIPALRTVGNIVTGD 314 (402)
Q Consensus 242 ~l~~L~~lL~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-----~~~~v~~~a~~~l~nl~~~~ 314 (402)
.++.+...+.+ .+...++.++|+++.++.+..+....-.-..+++.|+.++.+ +...++..+++++|..+..-
T Consensus 452 ~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl 531 (1023)
T 4hat_C 452 MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFL 531 (1023)
T ss_dssp HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHH
Confidence 34444444443 478899999999999998765432222223466777777753 23346667889999987632
Q ss_pred hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH--------HHHHcCCHHHHHHHhccCCHHHHH
Q 015687 315 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ--------AIIEAGIIGPLVNLLLNAEFEIKK 386 (402)
Q Consensus 315 ~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~--------~l~~~~~i~~L~~ll~~~~~~v~~ 386 (402)
..... .+. .++..|...+..+ .+.++..|||++.+||..+..... ..++ .++..+...+..-+.+-+.
T Consensus 532 ~~~~~-~L~-~vl~~L~~~l~~~-~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~-~il~~l~~~~~~l~~~~~~ 607 (1023)
T 4hat_C 532 KAHWN-FLR-TVILKLFEFMHET-HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQ-TIIRDIQKTTADLQPQQVH 607 (1023)
T ss_dssp HHCHH-HHH-HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHH-HHHHTHHHHHTTSCHHHHH
T ss_pred hccHH-HHH-HHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHH-HHHHHHHHHHHhCCHHHHH
Confidence 21111 111 3445566666666 788999999999999974333221 0111 1334444444556677778
Q ss_pred HHHHHHHHhhcCC
Q 015687 387 EAAWAISNATSGG 399 (402)
Q Consensus 387 ~a~~aL~nl~~~~ 399 (402)
.+..+++.++...
T Consensus 608 ~lyeai~~vi~~~ 620 (1023)
T 4hat_C 608 TFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC
Confidence 8888888887653
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00062 Score=59.41 Aligned_cols=192 Identities=12% Similarity=0.110 Sum_probs=128.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCch-hH-Hh-hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCC
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPI-NE-VI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~-~~-~~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~ 147 (402)
..+| +-+.|.+.+...+..|+..+.+++........ +. +. -....+.+...+.+.+ ..++..++.++..++....
T Consensus 10 sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~ 87 (278)
T 4ffb_C 10 TTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFA 87 (278)
T ss_dssp -CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred hcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhh
Confidence 3456 66889999999999999999998865321111 11 11 1234566777888877 8999999999998875321
Q ss_pred c--c-hH--HHHhCCchHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHH
Q 015687 148 E--N-TR--VVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 221 (402)
Q Consensus 148 ~--~-~~--~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~ 221 (402)
. . .. ...-..++|.|+. .+.+....+++.+..++..++...... .. +++.++..+ .+.++.++..++
T Consensus 88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l 160 (278)
T 4ffb_C 88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAA 160 (278)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHH
Confidence 1 1 11 1112246777775 578889999999999888776432211 11 234455555 677888888888
Q ss_pred HHHHHhhhCC--C-CCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC
Q 015687 222 WTLSNFCRGK--P-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (402)
Q Consensus 222 ~~L~~l~~~~--~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~ 271 (402)
..|..+.... . ......+..+++.+..+|.+.|++||..|..++..+-..
T Consensus 161 ~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 161 NCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 8888877653 1 122334466778888999999999999999998877543
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0018 Score=67.68 Aligned_cols=234 Identities=12% Similarity=0.134 Sum_probs=129.5
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCC---CchhhHHHHh--cCChHHHHHHhccch------------------h
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGD---SPKCRDLVLS--NGALMPLLAQFNEHA------------------K 213 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~---~~~~~~~~~~--~g~i~~L~~~l~~~~------------------~ 213 (402)
.+++.++.....++.++...++..+..++.+ .+..+..... ...++.++..+.... +
T Consensus 344 ~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d 423 (1049)
T 3m1i_C 344 NAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKE 423 (1049)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhcc
Confidence 4577777777778889999999888887651 1111111111 012333343331110 0
Q ss_pred ---hHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhcc--CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 015687 214 ---LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 288 (402)
Q Consensus 214 ---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L 288 (402)
......+..+|..++...+ ......+.+.+...+. ..+...++.++++++.++.........-.-..+++.+
T Consensus 424 ~d~~~~~~~~~~~L~~l~~~~~---~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l 500 (1049)
T 3m1i_C 424 SDTIQLYKSEREVLVYLTHLNV---IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDL 500 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCH---HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHH
Confidence 0234456667777764422 1222334455555554 3467789999999999986543321111112344555
Q ss_pred HHhcCC-----CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH-
Q 015687 289 VELLRH-----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ- 362 (402)
Q Consensus 289 ~~~L~~-----~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~- 362 (402)
..+... +.+.++..+++++|.++..-....+ .+. .+++.++..+.++ ++.|+..||+++.+++...+....
T Consensus 501 ~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~-~l~-~vl~~ll~~l~~~-~~~V~~~A~~al~~l~~~~~~~l~~ 577 (1049)
T 3m1i_C 501 LDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-FLR-TVILKLFEFMHET-HEGVQDMACDTFIKIVQKCKYHFVI 577 (1049)
T ss_dssp HHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-HHH-HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHHTHHHHS
T ss_pred HHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHH-HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 554332 2234455688999988753221111 222 4567788888877 899999999999999974333221
Q ss_pred -------HHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 363 -------AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 363 -------~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
..++ .++..+..++..-+.+-......+++.++.
T Consensus 578 ~~~~~~~p~~~-~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 578 QQPRESEPFIQ-TIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp CCTTCSSCHHH-HHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCcHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 1122 144445555555455555566666666654
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.006 Score=53.32 Aligned_cols=240 Identities=14% Similarity=0.157 Sum_probs=163.1
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh----HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhh
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR----DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~----~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~ 228 (402)
+...+.+..|+..|..-+-+.|..+..++.++.....+.+ +.+.. -.+.+..++....++++.-.+-..|..++
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLReci 151 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence 4445788899999988899999999999999886654322 23332 33444444433456677777777777777
Q ss_pred hCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcCCCChhhHHHHHH
Q 015687 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIPALR 305 (402)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~~L~~~~~~v~~~a~~ 305 (402)
++..........+.+-.+.+.++.++-++..+|..++..+..........++.. .++.....+|.+++.-.+..++.
T Consensus 152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 764333333335566677788889999999999999988876555555555554 35677888899999999999999
Q ss_pred HHHHhhcCCh--HH-HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHH-HH--cCCHHHHHHHh
Q 015687 306 TVGNIVTGDD--MQ-TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAI-IE--AGIIGPLVNLL 377 (402)
Q Consensus 306 ~l~nl~~~~~--~~-~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l-~~--~~~i~~L~~ll 377 (402)
.||.+..... .. ..++-+..-+..++.+|.+. +..++-+|..++--+.+ ..+..+..+ +. ..++..|-++.
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~ 310 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQ 310 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCC
Confidence 9999987533 22 22233445688999999999 99999999999987776 234444444 43 33455555555
Q ss_pred ccC--CHHHHHHHHHHHHHh
Q 015687 378 LNA--EFEIKKEAAWAISNA 395 (402)
Q Consensus 378 ~~~--~~~v~~~a~~aL~nl 395 (402)
.+. |.....+=...+..|
T Consensus 311 ~d~~eDeqF~dEK~~lI~~I 330 (341)
T 1upk_A 311 NDRTEDEQFNDEKTYLVKQI 330 (341)
T ss_dssp TTC-CCSHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHH
Confidence 443 445555544444444
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0011 Score=68.51 Aligned_cols=220 Identities=9% Similarity=0.087 Sum_probs=133.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc--chhhHHHHHHHHHHHHhhhCCCCCchhhhhchHH
Q 015687 167 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 244 (402)
Q Consensus 167 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~ 244 (402)
.+.+...++.++++++.++....... ...++.++..+.. .+++.++..++|++..++..-.. .......+++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~-~~~~l~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLAD-HPVMINSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHH-CHHHHTTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHH
Confidence 55688899999999999997644311 1234455554422 24677999999999999875311 1256678899
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CChhhHHHHHHHHHHhhcCCh-HHHHHH
Q 015687 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDD-MQTQCI 321 (402)
Q Consensus 245 ~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~--~~~~v~~~a~~~l~nl~~~~~-~~~~~i 321 (402)
.++..|.+ +.++..|++++.+++..........+ ..+++.+..++.. -+...+..++.+++.++...+ +.....
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99988854 88999999999999854332111011 1344455555554 246788889999999986543 333333
Q ss_pred HhCCChHHHHHHh----cCCCchhHHHH---HHHHHHHHhc--CC--H------------------HHHHHHHHcCCHHH
Q 015687 322 INHQALPCLLDLL----TQNYKKSIKKE---ACWTISNITA--GN--V------------------NQIQAIIEAGIIGP 372 (402)
Q Consensus 322 ~~~~~l~~L~~ll----~~~~~~~v~~~---a~~~L~nl~~--~~--~------------------~~~~~l~~~~~i~~ 372 (402)
++ .+++.+...+ +...++..+.. ..-+|+.+.. +. + +....+.+ .+++.
T Consensus 610 ~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 687 (963)
T 2x19_B 610 LH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQ-QVFQL 687 (963)
T ss_dssp HH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHH-HHHHH
T ss_pred HH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHH-HHHHH
Confidence 32 3444444443 22224444443 3334444442 10 0 11222332 36677
Q ss_pred HHHHhcc--CCHHHHHHHHHHHHHhhc
Q 015687 373 LVNLLLN--AEFEIKKEAAWAISNATS 397 (402)
Q Consensus 373 L~~ll~~--~~~~v~~~a~~aL~nl~~ 397 (402)
+..++.. .++.+.+.++.++..++.
T Consensus 688 ~~~~l~~~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 688 IQKVLSKWLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 7777653 567899999999888653
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0018 Score=55.28 Aligned_cols=185 Identities=15% Similarity=0.059 Sum_probs=119.0
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc---cchhhHHHHHHHHHHHHhh----hCCCCC
Q 015687 162 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFC----RGKPQP 234 (402)
Q Consensus 162 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~l~----~~~~~~ 234 (402)
+...|.+.+..-+..++..|.......+ +.+.. .++.++..+. .+++..+...++.+|..+. ......
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3444455566666666666665543332 22222 3333333221 2456777777777766653 322222
Q ss_pred chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhcc-CChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 015687 235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD-GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 235 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~ 313 (402)
.......++|.|+.-+.++.+.++..+-.++..+.. .++. .+++.+.+.+.+.++..+..++..++.+...
T Consensus 126 ~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 126 SQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp CHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 233346788999999998888898888777766553 1221 2467788888999999999999999999752
Q ss_pred ChHHHHHHHhCCCh---HHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 015687 314 DDMQTQCIINHQAL---PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 365 (402)
Q Consensus 314 ~~~~~~~i~~~~~l---~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 365 (402)
.... ..+.+ |.+.+++.++ +..||..|..++..+..+-.+.+...+
T Consensus 198 ~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 198 AGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp HCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred cCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2111 23568 9999999998 999999999999977763233344433
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0018 Score=56.49 Aligned_cols=184 Identities=13% Similarity=0.125 Sum_probs=123.3
Q ss_pred HHHHhccchhhHHHHHHHHHHHHhhhCCCCCc-----hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh-----
Q 015687 204 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL-----FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN----- 273 (402)
Q Consensus 204 L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~----- 273 (402)
+-..| .+.+-..+..++..+..+....+... ........+.+...+.+.+..+...++.++..++....
T Consensus 14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 45566 67788889999988888776642211 11234556777788889999999999999988764321
Q ss_pred HHHHHHHHhCcHHHHHHh-cCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 015687 274 DKIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352 (402)
Q Consensus 274 ~~~~~~~~~~~i~~L~~~-L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n 352 (402)
.......-..+++.|+.- +.+....++..++.++..++...... . .+++.+...+.+. +|.++.+++..|..
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~l~~K-npkv~~~~l~~l~~ 165 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPFFEKK-LPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGGGGCS-CHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence 111112223467777764 78888899999988887776532210 1 1235666778888 99999999988887
Q ss_pred Hhc--CCHH-HHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 015687 353 ITA--GNVN-QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (402)
Q Consensus 353 l~~--~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 396 (402)
+.. |... .....+. .+++.+..++.+.++.||.+|..++..+-
T Consensus 166 ~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 764 2111 1122222 25667888899999999999999987764
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0089 Score=51.07 Aligned_cols=177 Identities=10% Similarity=0.098 Sum_probs=122.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhh----cCCCCHHHHHHHHHHHHHhhc----C
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL----SRDDFPQLQFEAAWALTNIAS----G 145 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL----~~~~~~~~~~~a~~~L~~l~~----~ 145 (402)
+.+...+.+.|......|+..|...++.. + +.++. .+..+++.+ .+++ ..+...++..|..+.. .
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~---~-~~~~~--~lDll~kw~~lr~~d~N-~~v~~~~L~~L~~l~~~l~~~ 121 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTS---P-RSLLS--NSDLLLKWCTLRFFETN-PAALIKVLELCKVIVELIRDT 121 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHC---H-HHHHH--THHHHHHHHHHHTTSCC-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhC---h-HHHHH--HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhc
Confidence 57777888899999999999999987642 1 22221 123333322 3555 7888888888877642 2
Q ss_pred CCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHH
Q 015687 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 225 (402)
Q Consensus 146 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~ 225 (402)
.......-. .-.+|.|+.=+.++...+|+.+-.++..++.-.+. ..+++.+++-+ .+.+...+..++..+.
T Consensus 122 ~y~~~~~ea-~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~-ksKN~R~R~e~l~~l~ 192 (266)
T 2of3_A 122 ETPMSQEEV-SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDAL-KSKNARQRSECLLVIE 192 (266)
T ss_dssp TCCCCHHHH-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGG-GCSCHHHHHHHHHHHH
T ss_pred cccchHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHH-ccCCHHHHHHHHHHHH
Confidence 122222111 23689999999999999999988888777542221 12466677777 7778888999988888
Q ss_pred HhhhCCCCCchhhhhchH---HHHHHhccCCChhHHHHHHHHHHHhcc
Q 015687 226 NFCRGKPQPLFEQTRPAL---PALERLIHSNDDEVLTDACWALSYLSD 270 (402)
Q Consensus 226 ~l~~~~~~~~~~~~~~~l---~~L~~lL~~~~~~v~~~a~~~l~~l~~ 270 (402)
.+....... ....+ |.+..++.+.|..|+..|+.++..+-.
T Consensus 193 ~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 193 YYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 887664222 13467 999999999999999999999986643
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.008 Score=52.54 Aligned_cols=201 Identities=12% Similarity=0.111 Sum_probs=147.9
Q ss_pred HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhh---h---hchHHHHHHhccCCChhHHHHHHHHHH
Q 015687 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ---T---RPALPALERLIHSNDDEVLTDACWALS 266 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~---~---~~~l~~L~~lL~~~~~~v~~~a~~~l~ 266 (402)
..+...+.+..|+..| ..-+-+.++.++.++.++.+......... + ..++..|+..- +++++.-.+-..|.
T Consensus 72 ~ei~~~dll~~Li~~l-~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLR 148 (341)
T 1upk_A 72 QELYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLR 148 (341)
T ss_dssp HHHHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhc-ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHH
Confidence 3445567788888888 77788899999999999998874333222 2 23344444433 34555455555555
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC---CChHHHHHHhcCCCchhHH
Q 015687 267 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKSIK 343 (402)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~---~~l~~L~~ll~~~~~~~v~ 343 (402)
.++. .+.....++..+.+-.+.+++..++-++...|..++..+.+.........+.. .++.....+|.++ +.-+|
T Consensus 149 ecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTk 226 (341)
T 1upk_A 149 ECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTK 226 (341)
T ss_dssp HHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHH
T ss_pred HHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhH
Confidence 5554 44456678888888999999999999999999999999988766555556543 3577788899998 99999
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHH-cCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 344 KEACWTISNITAG--NVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 344 ~~a~~~L~nl~~~--~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
+.+...|+.|... +.......+. ..-+..++.+|.+....+|.+|..+.--++..
T Consensus 227 RQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 227 RQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 9999999999864 5555555553 45688999999999999999999887665543
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0003 Score=59.68 Aligned_cols=46 Identities=22% Similarity=0.210 Sum_probs=30.4
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHH
Q 015687 328 PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 393 (402)
Q Consensus 328 ~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 393 (402)
+.|..++.++ +..||..++..++ .+.|..+ .++++.|+..|...|+
T Consensus 197 ~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 197 DDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 4566666666 7777777766542 2445555 8888999998876543
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.018 Score=47.78 Aligned_cols=144 Identities=17% Similarity=0.080 Sum_probs=107.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CCchhhH
Q 015687 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAG-DSPKCRD 193 (402)
Q Consensus 116 i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~-~~~~~~~ 193 (402)
++....+.+++. .++|..|+..|+.. . +. ..+++.+.. +-.+++-.|++.+..+++.++. ..++.
T Consensus 73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~--~~-------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-S--KD-------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHTCSS-HHHHHHHHHHHHHT-T--TS-------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHhCcc-hHHHHHHHHHHHhc-c--Cc-------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 555666677776 79999999998887 3 11 135677776 5667889999999999999985 44431
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 273 (402)
.++.+.... .+++..+++.++..+.-.+.. + ........++|.+..+..+++..|+..+.|.|..++...+
T Consensus 140 ------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 455566666 888999999999887665543 2 1223335678888888888999999999999999999888
Q ss_pred HHHHHHHH
Q 015687 274 DKIQAVIE 281 (402)
Q Consensus 274 ~~~~~~~~ 281 (402)
+.+..+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77665554
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.01 Score=61.12 Aligned_cols=236 Identities=15% Similarity=0.098 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHH-HhC----CchHHHHHhhC-----CCCHHHHHHHHHHHHHhhCCCchhhHHHHhc
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVV-IDH----GAVPIFVRLLS-----SPTDDVREQAVWALGNVAGDSPKCRDLVLSN 198 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~-~~~----g~i~~L~~lL~-----~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 198 (402)
....+.++.+|+.++++-......+ -.. .+++.+..+++ .+.+.++..++++++..+..-.. ..
T Consensus 457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~~ 530 (980)
T 3ibv_A 457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ES 530 (980)
T ss_dssp HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------CC
T ss_pred HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------Cc
Confidence 4668889999999988644322211 011 13455555554 57899999999999998754321 22
Q ss_pred CChHHHHHHhcc-----chhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccC-----CCh-------------
Q 015687 199 GALMPLLAQFNE-----HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-----NDD------------- 255 (402)
Q Consensus 199 g~i~~L~~~l~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-----~~~------------- 255 (402)
..+++++..+.. +++..++..|+.++.++|+.....-......++..+..+|.. .+.
T Consensus 531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~ 610 (980)
T 3ibv_A 531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRN 610 (980)
T ss_dssp TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHT
T ss_pred hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhccc
Confidence 456777776644 456789999999999999886433333444555555555542 111
Q ss_pred ---hHHHHHHHHHHHhc---cCChHHHHHHHHhCcHHHHHH----hcCCC----Chhh-HHHHHHHHHHhhcCChHH---
Q 015687 256 ---EVLTDACWALSYLS---DGTNDKIQAVIEAGVCPRLVE----LLRHP----SPSV-LIPALRTVGNIVTGDDMQ--- 317 (402)
Q Consensus 256 ---~v~~~a~~~l~~l~---~~~~~~~~~~~~~~~i~~L~~----~L~~~----~~~v-~~~a~~~l~nl~~~~~~~--- 317 (402)
+-+.....+++.+. ..+.+.....++ .++++++. .+... +... ....+.++|.++.+-+..
T Consensus 611 ~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~ 689 (980)
T 3ibv_A 611 SDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSE 689 (980)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-C
T ss_pred CCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCC
Confidence 12333445555554 223333332332 23344333 33221 1111 224567778888653211
Q ss_pred ---HHHHHhCCChHHHHHHhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhc
Q 015687 318 ---TQCIINHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 378 (402)
Q Consensus 318 ---~~~i~~~~~l~~L~~ll~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 378 (402)
...++. .+.+.+...+. .. +..|+..++.++..+...-...+.. .+|.++..+-
T Consensus 690 ~~p~~~~f~-~~~~~il~~l~~~~~-~~~irea~~~~~~r~i~~lg~~~~p-----~lp~~i~~ll 748 (980)
T 3ibv_A 690 EVAWLASFN-KASDEIFLILDRMGF-NEDIRGAVRFTSGRIINVVGPDMLP-----KVPQLISILL 748 (980)
T ss_dssp CCSHHHHHH-HHHHHHHHHHHHSCC-SHHHHHHHHHHHHHHTTTTHHHHTT-----THHHHHHHHH
T ss_pred CCcHHHHHH-HHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHhHHH-----HHHHHHHHHH
Confidence 111222 34555655564 33 6789999999999998754443332 4555555443
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00055 Score=58.09 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=44.0
Q ss_pred HHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCC
Q 015687 246 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ 325 (402)
Q Consensus 246 L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~ 325 (402)
+..++.++++.|+..+...+ ..+.|..++.++++.|+..+...++
T Consensus 175 l~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~~l~----------------- 219 (244)
T 1lrv_A 175 LGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVEHAS----------------- 219 (244)
T ss_dssp GGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHHHSC-----------------
T ss_pred HHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHHcCC-----------------
Confidence 33455666666766665432 2356777778888888888877754
Q ss_pred ChHHHHHHhcCCCchhHHHHHHHHH
Q 015687 326 ALPCLLDLLTQNYKKSIKKEACWTI 350 (402)
Q Consensus 326 ~l~~L~~ll~~~~~~~v~~~a~~~L 350 (402)
.+.|..+ .++ ++.||..+...|
T Consensus 220 -~~~L~~L-~D~-~~~VR~aa~~~L 241 (244)
T 1lrv_A 220 -LEALREL-DEP-DPEVRLAIAGRL 241 (244)
T ss_dssp -HHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred -HHHHHHc-cCC-CHHHHHHHHHHh
Confidence 2445555 666 889998886544
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0029 Score=59.02 Aligned_cols=188 Identities=17% Similarity=0.131 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHH
Q 015687 128 FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 207 (402)
Q Consensus 128 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~ 207 (402)
-..+|+.|+.+|+.+ ..-+.. ..++..++..+..+..+++..++-.|..+ .+-..+ -.++++.++.-
T Consensus 241 VAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~---Ld~Vv~aVL~G 307 (800)
T 3oc3_A 241 VAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED---KDGLCRKLVSL 307 (800)
T ss_dssp BCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC---HHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH---HHHHHHHHHhh
Confidence 368999999999999 654443 34566666666788999999999999988 111111 12356667777
Q ss_pred hccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCC-C-hhHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 015687 208 FNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-D-DEVLTDACWALSYLSDGTNDKIQAVIEAGVC 285 (402)
Q Consensus 208 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~-~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i 285 (402)
| .+.|.+++..|+.+|..++ .+ .....++..+-..|.+- | ..-....+..|+.|+..+... ......+
T Consensus 308 L-~D~DDDVRAVAAetLiPIA--~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LV 377 (800)
T 3oc3_A 308 L-SSPDEDIKLLSAELLCHFP--IT----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERL 377 (800)
T ss_dssp T-TCSSHHHHHHHHHHHTTSC--CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGG
T ss_pred c-CCcccHHHHHHHHHhhhhc--ch----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHH
Confidence 7 6778899999999999888 12 23455566666666442 2 122334455556655443211 1123789
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHH-HHhcCCCchhHHHHHHHHH
Q 015687 286 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL-DLLTQNYKKSIKKEACWTI 350 (402)
Q Consensus 286 ~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~-~ll~~~~~~~v~~~a~~~L 350 (402)
|+|.++|.|+-.+||..+++++..+. .. .++..+. .+|-.. +++++..+..+-
T Consensus 378 PRL~PFLRHtITSVR~AVL~TL~tfL--~~---------~~LRLIFQNILLE~-neeIl~lS~~VW 431 (800)
T 3oc3_A 378 KDIFPCFTSPVPEVRTSILNMVKNLS--EE---------SIDFLVAEVVLIEE-KDEIREMAIKLL 431 (800)
T ss_dssp GGTGGGGTCSSHHHHHHHHHHTTTCC--CH---------HHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHHHH--hh---------hHHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence 99999999999999999999998887 11 2233333 344445 677776554433
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.3 Score=50.52 Aligned_cols=222 Identities=13% Similarity=0.080 Sum_probs=138.4
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCC---
Q 015687 70 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT--- 146 (402)
Q Consensus 70 ~~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~--- 146 (402)
+..+..++..+.+++.+.+..|-..|..+ .. .+ ++...+..+|..+.++.++..|+.+|.+.....
T Consensus 27 v~~Le~lv~~ly~p~~~~r~qA~~~L~q~-q~--sp--------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~ 95 (1073)
T 3gjx_A 27 INLLDNVVNCLYHGEGAQQRMAQEVLTHL-KE--HP--------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKI 95 (1073)
T ss_dssp HHHHHHHHHTTTCSSHHHHHHHHHHHHTS-SC--CS--------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH-Hc--Cc--------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 34678899998888888888888877765 22 22 224445556655545899999999999876521
Q ss_pred -CcchHHHHhCCchHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCC-chhhHHHHhcCChHHHHHHhccchhhHHHHH
Q 015687 147 -SENTRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRN 219 (402)
Q Consensus 147 -~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~ 219 (402)
+......+...++..+...-.+ .++.++.+.+.++..++... |.. -.+.++.++..+. .++.....
T Consensus 96 L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-----Wp~fi~dLv~~~~--~~~~~~~~ 168 (1073)
T 3gjx_A 96 LPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-----WPTFISDIVGASR--TSESLCQN 168 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHH--HCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-----ccHHHHHHHHHhC--CCHHHHHH
Confidence 2222333333556666655433 35677788888888887432 110 1235666666662 23344566
Q ss_pred HHHHHHHhhhCCCCC------c------hhhh----hchHHHHHHhcc-CCChhHHHHHHHHHHHhccCChHHHHHHHHh
Q 015687 220 ATWTLSNFCRGKPQP------L------FEQT----RPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEA 282 (402)
Q Consensus 220 a~~~L~~l~~~~~~~------~------~~~~----~~~l~~L~~lL~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 282 (402)
.+.+|..|++.-... . ...+ ..+++.+..+|. ..++++...++.++..+...-+ +..+++.
T Consensus 169 ~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~ 246 (1073)
T 3gjx_A 169 NMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFET 246 (1073)
T ss_dssp HHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSS
T ss_pred HHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccc
Confidence 777777776652110 0 0011 233344444443 3577888889999998887765 3567788
Q ss_pred CcHHHH-HHhcCCCChhhHHHHHHHHHHhhcC
Q 015687 283 GVCPRL-VELLRHPSPSVLIPALRTVGNIVTG 313 (402)
Q Consensus 283 ~~i~~L-~~~L~~~~~~v~~~a~~~l~nl~~~ 313 (402)
++++.+ ..+| .++.++..|+.||..++..
T Consensus 247 ~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 247 KLISTLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp SHHHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 888888 4666 4667999999999999874
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.038 Score=46.20 Aligned_cols=143 Identities=13% Similarity=0.125 Sum_probs=102.8
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHh-------cCCCC-----hhhHHHHHHHHHHhhcCChHHHHH
Q 015687 254 DDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVEL-------LRHPS-----PSVLIPALRTVGNIVTGDDMQTQC 320 (402)
Q Consensus 254 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~~-------L~~~~-----~~v~~~a~~~l~nl~~~~~~~~~~ 320 (402)
+++-++.|+..|+.=-+.-++....+..+ |.+..|++= ++.+. ..-...|+..+..++++ ++.+..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhH
Confidence 45567777777766555444554455554 555554332 22222 12234566667777764 557777
Q ss_pred HHhCCChHHHHHHhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 321 IINHQALPCLLDLLTQNY----KKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 321 i~~~~~l~~L~~ll~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
++++++.-.|..+|+... .+.+|-.+..+++.+.. ++++.+..+++.+++|..++.++.++.-.+.-|...+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 999998888888886552 24788899999999997 7899999999999999999999999999999999988877
Q ss_pred hc
Q 015687 396 TS 397 (402)
Q Consensus 396 ~~ 397 (402)
..
T Consensus 173 L~ 174 (268)
T 2fv2_A 173 LL 174 (268)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.74 Score=48.64 Aligned_cols=300 Identities=10% Similarity=0.058 Sum_probs=170.0
Q ss_pred cHHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhc-CCCCHHHHHHHHHHHHHhhcC---
Q 015687 72 SLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASG--- 145 (402)
Q Consensus 72 ~i~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~~~~~~a~~~L~~l~~~--- 145 (402)
.+..+++.+.++ +.+.+..|-..|..+-.. ++ ....+...|. .+.++.++..|+..|.+....
T Consensus 12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--ch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 355566555554 667788888888776321 11 2334444333 333389999999999987642
Q ss_pred -CCcchHHHHhCCchHHHHHhhC---CCCHHHHHHHHHHHHHhhCCC-chhhHHHHhcCChHHHHHHhccchhhHHHHHH
Q 015687 146 -TSENTRVVIDHGAVPIFVRLLS---SPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA 220 (402)
Q Consensus 146 -~~~~~~~~~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a 220 (402)
-++.....++..++..+...-. +....++.+.+.++..++... |.. -.+.++.++..+.. +......+
T Consensus 81 ~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-----Wp~ll~~L~~~~~~--~~~~~e~~ 153 (1204)
T 3a6p_A 81 GMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-----WPDMLIELDTLSKQ--GETQTELV 153 (1204)
T ss_dssp GSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHHHHHT--CHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHhcC--CHHHHHHH
Confidence 1222223333345555554322 146889999999999987442 211 13467777877733 34456777
Q ss_pred HHHHHHhhhCC-C--CCchhh-----------hhchHHHHHHhccC-------------------CChhHHHHHHHHHHH
Q 015687 221 TWTLSNFCRGK-P--QPLFEQ-----------TRPALPALERLIHS-------------------NDDEVLTDACWALSY 267 (402)
Q Consensus 221 ~~~L~~l~~~~-~--~~~~~~-----------~~~~l~~L~~lL~~-------------------~~~~v~~~a~~~l~~ 267 (402)
+.+|..+++.. . ...... ...+++.+..++.. .+..+...++.++.+
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 88888887642 1 110000 11344444444432 134567777888876
Q ss_pred hccCChHHHHHHHHhC--cHHHHHHhcCCCChhhHHHHHHHHHHhhcCC--hHHHHHHHhC---CChHHHHHHhc-----
Q 015687 268 LSDGTNDKIQAVIEAG--VCPRLVELLRHPSPSVLIPALRTVGNIVTGD--DMQTQCIINH---QALPCLLDLLT----- 335 (402)
Q Consensus 268 l~~~~~~~~~~~~~~~--~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~--~~~~~~i~~~---~~l~~L~~ll~----- 335 (402)
.....+- ..+.+.. +++.+..++. ++.++..|+.+|..++... +.....++.. ..+..++..+.
T Consensus 234 ~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~ 309 (1204)
T 3a6p_A 234 YIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG 309 (1204)
T ss_dssp TTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred HHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 6654332 2333433 6777776665 4678999999999999754 2222222221 11234444432
Q ss_pred --CCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-----------cCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 336 --QNYKKSIKKEACWTISNITAGNVNQIQAIIE-----------AGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 336 --~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----------~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
+..+.++.+..+..+..++. ....+++ .++++.++.++.+++..+-..++.....+..
T Consensus 310 ~~~e~d~e~~k~l~~ll~~lg~----~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~ 380 (1204)
T 3a6p_A 310 GLVEKHYVFLKRLCQVLCALGN----QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFR 380 (1204)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHH----HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHS
T ss_pred CCccHHHHHHHHHHHHHHHHHH----HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHh
Confidence 11145677777777777762 1222222 1357888888888888888877765554443
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.039 Score=46.17 Aligned_cols=140 Identities=11% Similarity=0.177 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC----CHHHHHHHHHHHHHhhc-CCCcchHHHHhCCchHHHH
Q 015687 89 LDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD----FPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFV 163 (402)
Q Consensus 89 ~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~----~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~ 163 (402)
-.|+..|..+++ .++....+++.++.-.|..+|+..+ .+.++..++.+++.+.. ++++....+.+.+++|..+
T Consensus 74 cnaLaLlQcvAs--hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 74 CNALALLQCVAS--HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHH--CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHc--CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 445556666665 3577778999998888888887654 35788999999999886 3456677788899999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCCchhhHHH------Hh-cCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 164 RLLSSPTDDVREQAVWALGNVAGDSPKCRDLV------LS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 164 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~------~~-~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
+.++.++.-.+..|...+..+..++.+..-.+ .. ..++..++..+.+.+++.+.+++..+...|+.+
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 99999999999999999998876655432111 11 124455555555677889999999999999877
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.47 Score=43.64 Aligned_cols=245 Identities=12% Similarity=0.039 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHh
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 208 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l 208 (402)
+..+..|+..|......-|+..+. ++..++.+.++.+..||.+|+..|..+|.+ +.... +.+.|+++|
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k-----iaDvL~QlL 109 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPR-----VADILTQLL 109 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhh-----HHHHHHHHH
Confidence 788999999999988877776654 678899999999999999999999999988 23222 567788888
Q ss_pred ccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhc-cCChHHHHHHHHhCcHHH
Q 015687 209 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPR 287 (402)
Q Consensus 209 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~-~~~~~~~~~~~~~~~i~~ 287 (402)
+..++.-...+-++|..+...+| .+.+..+...+..+++.+++.++..|..=. .-..+....-++.-++..
T Consensus 110 -qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ 181 (507)
T 3u0r_A 110 -QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTE 181 (507)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHH
T ss_pred -hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHH
Confidence 66676677777777777776643 344555555555568888988887775322 211111112223334566
Q ss_pred HHHhcCCCChhhHHHHHHHHHHhhcCC-hHHHHHHHhCCChHHHHHHh------cCCCchhHHHHHHHHHHH----Hhc-
Q 015687 288 LVELLRHPSPSVLIPALRTVGNIVTGD-DMQTQCIINHQALPCLLDLL------TQNYKKSIKKEACWTISN----ITA- 355 (402)
Q Consensus 288 L~~~L~~~~~~v~~~a~~~l~nl~~~~-~~~~~~i~~~~~l~~L~~ll------~~~~~~~v~~~a~~~L~n----l~~- 355 (402)
+...|.+-...--.-.+.+|+.+-... ....+.+ ++.+.... ... +++.......|+.. ++.
T Consensus 182 ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeL-----v~ii~eQa~L~~~f~~s-D~e~vdRlI~C~~~ALP~FS~~ 255 (507)
T 3u0r_A 182 SKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQL-----VELVAEQADLEQTFNPS-DPDCVDRLLQCTRQAVPLFSKN 255 (507)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHH-----HHHHHHHHTTTSCCCSS-CHHHHHHHHHHHHHHGGGCBTT
T ss_pred HHHHhccccHHHHHHHHHHHHhcccccCchHHHHH-----HHHHHHHHhccCCCCCc-CHHHHHHHHHHHHHHHHHhccC
Confidence 677775555444444555555543332 2222222 22333332 112 33333333333332 222
Q ss_pred -CCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhcCCC
Q 015687 356 -GNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGS 400 (402)
Q Consensus 356 -~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~ 400 (402)
++......+++. ++|.+-.+-.. ...+.+..-+.++.-++....
T Consensus 256 v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~ 301 (507)
T 3u0r_A 256 VHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG 301 (507)
T ss_dssp BCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred CChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence 345555556555 77755443332 223466677777777665543
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.088 Score=48.34 Aligned_cols=124 Identities=17% Similarity=0.131 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHH
Q 015687 168 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE 247 (402)
Q Consensus 168 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~ 247 (402)
.++...+..|+..|.....+-|..++. ++..++.++ .+.|..++..|...|..+|.+ ..+..+..+|+
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHH
Confidence 357899999999999999998887665 577899999 888999999999999999976 34678899999
Q ss_pred HhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 015687 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (402)
Q Consensus 248 ~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~ 311 (402)
++|+++++.-...+=++|..+...++.. .+..+...+..+++.+|+.++..|..-.
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred HHHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 9999999887777777777776555422 2333444443457888988888885544
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.16 Score=42.55 Aligned_cols=138 Identities=12% Similarity=0.141 Sum_probs=85.0
Q ss_pred HHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcC----C------CCHHHHHHHHHHHHHhhcCCCcchHHHHh-CCch
Q 015687 91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D------DFPQLQFEAAWALTNIASGTSENTRVVID-HGAV 159 (402)
Q Consensus 91 a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~----~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~i 159 (402)
-+..|+..+..+...-++.+ ..+++..|+++|.. . .+...+..++.||..+... ......+.+ .+.+
T Consensus 21 ~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~i 98 (233)
T 2f31_A 21 CLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGI 98 (233)
T ss_dssp HHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS-HHHHHHHHTSSSHH
T ss_pred HHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC-hHHHHHHHcCcHHH
Confidence 44455544443322224556 45667777777642 1 1257789999999999875 444444444 5789
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-hHHHH----------hcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
..+...|.++++.++..++..|..+|..+. .. ...++ +..-+.+++..+....+.+....++..+-.+
T Consensus 99 ~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~l 178 (233)
T 2f31_A 99 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 178 (233)
T ss_dssp HHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 999999999999999999999998886543 12 23322 2224555666664444555555555555555
Q ss_pred hhC
Q 015687 228 CRG 230 (402)
Q Consensus 228 ~~~ 230 (402)
...
T Consensus 179 i~~ 181 (233)
T 2f31_A 179 ITP 181 (233)
T ss_dssp HTT
T ss_pred HCC
Confidence 544
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.081 Score=43.85 Aligned_cols=141 Identities=11% Similarity=0.064 Sum_probs=99.6
Q ss_pred HHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHH-hccCCChhHHHHHHHHHHHhcc-CChHHHHHHH
Q 015687 203 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER-LIHSNDDEVLTDACWALSYLSD-GTNDKIQAVI 280 (402)
Q Consensus 203 ~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~ 280 (402)
.+...|-+++..+++..|+.+|..+ . .....++.+.. +-.+++-.|++.+..++..++. ..++.
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~----- 139 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK----- 139 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-----
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-----
Confidence 3444444666668888899887776 2 11456777777 4456678899999989988874 33321
Q ss_pred HhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh--HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 015687 281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD--MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358 (402)
Q Consensus 281 ~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~--~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 358 (402)
.++.+.....+++..+|..|...+.-.+.... .... -++|.|-.+..++ +..||+..+|.|..++..+|
T Consensus 140 ---~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~-----~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ---ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPN-----EAIRRIADLKEDV-SEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ---THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHH-----HHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCH
T ss_pred ---HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHH-----HHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCH
Confidence 46778889999999999998887654332211 1111 2456666667777 88999999999999999999
Q ss_pred HHHHHHHH
Q 015687 359 NQIQAIIE 366 (402)
Q Consensus 359 ~~~~~l~~ 366 (402)
+-+..+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98777665
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.31 Score=44.22 Aligned_cols=157 Identities=11% Similarity=0.112 Sum_probs=102.7
Q ss_pred HHHHHhhcCCC-HHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcC----------CCCHHHHHHHHHHHHHh
Q 015687 74 PAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----------DDFPQLQFEAAWALTNI 142 (402)
Q Consensus 74 ~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~----------~~~~~~~~~a~~~L~~l 142 (402)
..++..|.++. .......+..|+..+......=++.++ .+++..|+++|.. ..+...+..++.||..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 34566666543 233344567777666544233356676 5668888888752 11257889999999999
Q ss_pred hcCCCcchHHHHh-CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-hHHHH----------hcCChHHHHHHhc
Q 015687 143 ASGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFN 209 (402)
Q Consensus 143 ~~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~L~~~l~ 209 (402)
.-. ......+++ ...+..|...|.++++.++..++..|..+|.... .. ...++ +..-+..++..+.
T Consensus 148 mN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 148 MNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp TSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred hcc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 875 344444444 5789999999999999999999999999986653 21 23332 2344777788775
Q ss_pred cchhhHHHHHHHHHHHHhhhCCC
Q 015687 210 EHAKLSMLRNATWTLSNFCRGKP 232 (402)
Q Consensus 210 ~~~~~~~~~~a~~~L~~l~~~~~ 232 (402)
...+.+....++..+-.+....+
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCC
T ss_pred ccCcHHHHHHHHHHHHHHHcCCC
Confidence 44566666666666666666544
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.3 Score=42.66 Aligned_cols=173 Identities=12% Similarity=0.061 Sum_probs=104.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCC----chHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch
Q 015687 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG----AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK 190 (402)
Q Consensus 116 i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g----~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~ 190 (402)
+..+.++++.+. +.+.-++..++-.+.+ +.....+.+.+ ++..+...+.+ ..+..+-.++++++|+.....
T Consensus 105 l~~l~kil~WP~--~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~- 180 (304)
T 3ebb_A 105 LQILWKAINCPE--DIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA- 180 (304)
T ss_dssp HHHHHHHHTSCT--TTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred HHHHHHHHcCCH--HhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence 556666665443 4566677777665543 44433333322 22334444443 456678899999999987765
Q ss_pred hhHHHHhcCChHHHHHHhc---cchhhHHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhccC-CChhHHHHHHHHH
Q 015687 191 CRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS-NDDEVLTDACWAL 265 (402)
Q Consensus 191 ~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~l 265 (402)
.++.+.. ....++..+. .+.+..++..++..+.|++-.. ..........++..+..++.. .|.+....++-+|
T Consensus 181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 5666654 2344444442 3456788888888888888653 222233334455666666643 5889999999999
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhcCC
Q 015687 266 SYLSDGTNDKIQAVIEAGVCPRLVELLRH 294 (402)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~i~~L~~~L~~ 294 (402)
+++...+.+..+.....|+-..+-...+.
T Consensus 259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 99997766554434344555555555544
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.14 Score=44.69 Aligned_cols=139 Identities=14% Similarity=0.120 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHhccCCCCchhH-Hhhc----CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhC--Cc
Q 015687 86 NIQLDATTQFRKLLSIERSPPINE-VIQS----GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH--GA 158 (402)
Q Consensus 86 ~~~~~a~~~l~~l~s~~~~~~~~~-~~~~----g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--g~ 158 (402)
+.++-++..+|-.+- .+.... +.+. .++..+...+.+...+..+..++++++|+... +..+..+... .+
T Consensus 117 ~~~fPvLDLlRl~~l---~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~i 192 (304)
T 3ebb_A 117 DIVFPALDILRLSIK---HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESL 192 (304)
T ss_dssp TTCHHHHHHHHHHTT---SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHH
T ss_pred HhHHHHHHHHHHHHc---CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHH
Confidence 445555666665542 222222 2221 12334445555443467799999999999985 5566665542 35
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh--HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR--DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~--~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
++.+...+.+++..++..++.++.|++......+ +... ..+..+..++....|.+....++-+|.+|...
T Consensus 193 l~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~--~ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 193 MSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKA--QCLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp HHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHH--HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 5666666667899999999999999984311100 1111 13344445554456778888888888888865
|
| >3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.23 Score=43.52 Aligned_cols=110 Identities=17% Similarity=0.117 Sum_probs=86.5
Q ss_pred HHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhc-cCCChhHHH
Q 015687 181 LGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLT 259 (402)
Q Consensus 181 L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~ 259 (402)
|.|+..+....-+-+.+..++..+...+ +.++.++.+..+..|...+..+ ..........+|.+...+ .+++.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEE
Confidence 3445555555668888889999998888 7788899999999998887653 222233467888888877 467899999
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc
Q 015687 260 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292 (402)
Q Consensus 260 ~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L 292 (402)
.....|+|...+.....+..+..|++..|...+
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I 376 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTII 376 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHH
Confidence 999999999998888888888999999988876
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=95.30 E-value=2.3 Score=44.14 Aligned_cols=133 Identities=16% Similarity=0.131 Sum_probs=85.1
Q ss_pred hHHHHHHhccc---hhhHHHHHHHHHHHHhh----hCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCCh
Q 015687 201 LMPLLAQFNEH---AKLSMLRNATWTLSNFC----RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273 (402)
Q Consensus 201 i~~L~~~l~~~---~~~~~~~~a~~~L~~l~----~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~ 273 (402)
+..+..++... .++.+...+..+++.|. ...+......+..+...+.+.+...+.+-..-++.+|+|+...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence 44455555322 24556666666665554 3333333344566666777777777888889999999998742
Q ss_pred HHHHHHHHhCcHHHHHHhcCC-------CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc-CCCchhHHHH
Q 015687 274 DKIQAVIEAGVCPRLVELLRH-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKE 345 (402)
Q Consensus 274 ~~~~~~~~~~~i~~L~~~L~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~-~~~~~~v~~~ 345 (402)
..++.|.+++.. ....++..|+++|.++....+...+ +.++++.. ..+++++|..
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHH
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHH
Confidence 235666666632 1346888999999999976654433 34666663 3347899999
Q ss_pred HHHHHHH
Q 015687 346 ACWTISN 352 (402)
Q Consensus 346 a~~~L~n 352 (402)
|+..|..
T Consensus 534 A~~~Lm~ 540 (1056)
T 1lsh_A 534 SCIVFFE 540 (1056)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888853
|
| >3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=1.4 Score=38.69 Aligned_cols=129 Identities=13% Similarity=0.144 Sum_probs=98.8
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHH
Q 015687 266 SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 345 (402)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~ 345 (402)
.++.-++.+.++-++..+++..+......++..+....+..+-.++....- ...- -...+|.++..+.-..+.++.-.
T Consensus 267 L~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL-~~t~-L~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 267 LGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKAL-AKTP-LENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGG-GTSC-CTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHH-hhcc-ccccchHHHHHhccCCCcceEEe
Confidence 355567778889999999999999999999999999998888777543221 1000 12568888888864447889999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-------CCHHHHHHHHHHHHHhh
Q 015687 346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-------AEFEIKKEAAWAISNAT 396 (402)
Q Consensus 346 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL~nl~ 396 (402)
....|+|+.++.....+.-+.+|.++.|...+.. .+..-++.||..++|..
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~L 402 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCL 402 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHH
Confidence 9999999999988877778899999999998743 34456777888888754
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=94.98 E-value=1 Score=46.79 Aligned_cols=202 Identities=15% Similarity=0.172 Sum_probs=125.8
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC----CCHHHHHHHHHHHHHhh----C
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVA----G 186 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~----~ 186 (402)
.+..+.+++.+.. -.. .+|+++|...... ..... ..+..+..++.+ .++.+++.++-++++++ .
T Consensus 357 a~~~i~~~i~~~~-l~~-~ea~~~l~~~~~~-~~Pt~-----e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~ 428 (1056)
T 1lsh_A 357 ALLFLKRTLASEQ-LTS-AEATQIVASTLSN-QQATR-----ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA 428 (1056)
T ss_dssp HHHHHHHHHHTTC-SCH-HHHHHHHHHHHHT-CCCCH-----HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC-CCH-HHHHHHHHHhhcc-CCCCH-----HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhc
Confidence 3555666666654 121 2355555433221 11111 245566667765 56788888888888875 2
Q ss_pred CCchhhHHHHhcCChHHHHHHhc---cchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccC-------CChh
Q 015687 187 DSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-------NDDE 256 (402)
Q Consensus 187 ~~~~~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-------~~~~ 256 (402)
+.+.+.. ..++.+.+.+. ...+.+-...++.+|.|+-.. ..++.|.+++.. ....
T Consensus 429 ~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~r 493 (1056)
T 1lsh_A 429 NTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTR 493 (1056)
T ss_dssp TCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHH
T ss_pred cCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchH
Confidence 3222211 23455554442 334566678888999998753 467777777742 1356
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc--CCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHh
Q 015687 257 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 334 (402)
Q Consensus 257 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L--~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll 334 (402)
++..|+++|..+....+..++ +.+.+++ ...++++|..|+..|-.. .++. ..+..+...+
T Consensus 494 vr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRiaA~~~Lm~t--~P~~--------~~l~~ia~~l 555 (1056)
T 1lsh_A 494 VQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES--KPSV--------ALVSMVAVRL 555 (1056)
T ss_dssp HHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT--CCCH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHHHHHHHHHH--CcCH--------HHHHHHHHHH
Confidence 889999999999876654433 5677777 456788999998887432 2221 2345677777
Q ss_pred cCCCchhHHHHHHHHHHHHhcCC
Q 015687 335 TQNYKKSIKKEACWTISNITAGN 357 (402)
Q Consensus 335 ~~~~~~~v~~~a~~~L~nl~~~~ 357 (402)
....+..|.......|.+++..+
T Consensus 556 ~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 556 RREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTCC
T ss_pred hhCchHHHHHHHHHHHHHHHhcC
Confidence 76558889988888999998743
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=94.97 E-value=1.2 Score=40.37 Aligned_cols=141 Identities=11% Similarity=0.126 Sum_probs=91.0
Q ss_pred HHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcC----C------CCHHHHHHHHHHHHHhhcCCCcchHHHH-hCCch
Q 015687 91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D------DFPQLQFEAAWALTNIASGTSENTRVVI-DHGAV 159 (402)
Q Consensus 91 a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~----~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~i 159 (402)
.+..|+..+..+...-++.|. .+++..|+.+|.. . .+...+..++.||..+... ......++ ..+++
T Consensus 25 ~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i 102 (386)
T 2bnx_A 25 CLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGI 102 (386)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHH
T ss_pred HHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHH
Confidence 445555545433222345564 4567777777642 1 1257889999999999875 33444444 45789
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-hHHHH----------hcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
..+...|.++++.++..++..|..+|..+. .. ...++ +..-+.+++..+..+.+.+....++..+-.+
T Consensus 103 ~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l 182 (386)
T 2bnx_A 103 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 182 (386)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 999999999999999999999988886543 21 22222 2335667788775556667766666666666
Q ss_pred hhCCCC
Q 015687 228 CRGKPQ 233 (402)
Q Consensus 228 ~~~~~~ 233 (402)
....+.
T Consensus 183 v~~~~d 188 (386)
T 2bnx_A 183 ITPAEE 188 (386)
T ss_dssp HTTCSC
T ss_pred HCCCCC
Confidence 666443
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=2.5 Score=38.10 Aligned_cols=88 Identities=11% Similarity=0.173 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHh
Q 015687 86 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 165 (402)
Q Consensus 86 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 165 (402)
+.+...+..++.++-.. ++. .-..+++.++++-.+.+ .+++...+..|...+....+.. . .+++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~---~--~~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELL---L--KLIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGH---H--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHH
Confidence 46888888888875533 232 22457999999998888 8999999999988876433332 2 367888889
Q ss_pred hCCCCHHHHHHHHHHHHHh
Q 015687 166 LSSPTDDVREQAVWALGNV 184 (402)
Q Consensus 166 L~~~~~~v~~~a~~~L~nl 184 (402)
|+++++.+...++.+.+++
T Consensus 109 L~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 9999999999999988887
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.59 E-value=1.2 Score=47.04 Aligned_cols=247 Identities=12% Similarity=0.081 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHH-hh-CCCCHHHHHHHHHHHHHhhCC-----CchhhHHHHhcCCh
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LL-SSPTDDVREQAVWALGNVAGD-----SPKCRDLVLSNGAL 201 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL-~~~~~~v~~~a~~~L~nl~~~-----~~~~~~~~~~~g~i 201 (402)
+..+.+|-..|..+-.. ++ +...+.. +. .+.+..+|..|+.+|.|.... +++.+..+. ..++
T Consensus 27 ~~~r~~Ae~~L~~~~~~-p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ll 95 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKEK-CP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NSVM 95 (1204)
T ss_dssp HHHHHHHHHHHHHHHHH-CT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HHHH
T ss_pred hHHHHHHHHHHHHHHhC-ch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HHHH
Confidence 67888888888776543 21 3333333 33 456889999999999987632 232333332 2233
Q ss_pred HHHHHHhcc--chhhHHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC-------
Q 015687 202 MPLLAQFNE--HAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG------- 271 (402)
Q Consensus 202 ~~L~~~l~~--~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~------- 271 (402)
..+...... ..+..++..++.+++.+.... |. .-..+++.++.++.+ ++.....++.+|..++..
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~ 170 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTL 170 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccch
Confidence 333222101 135678888899999988775 31 225778888888865 455567777888777532
Q ss_pred ChHHHHH---HHHh---CcHHHHHHhcCC-------------------CChhhHHHHHHHHHHhhcCChHHHHHHHhCC-
Q 015687 272 TNDKIQA---VIEA---GVCPRLVELLRH-------------------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQ- 325 (402)
Q Consensus 272 ~~~~~~~---~~~~---~~i~~L~~~L~~-------------------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~- 325 (402)
...+... .+.. .+++.+..++.. .+..+...++.++.+....-+. ..+.+..
T Consensus 171 ~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~ 248 (1204)
T 3a6p_A 171 PPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAENC 248 (1204)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhccc
Confidence 1111111 1111 223333333322 1234667788888877664442 2233433
Q ss_pred -ChHHHHHHhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHc---CCHHHHHHHhc--------cCCHHHHHHHHHH
Q 015687 326 -ALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEA---GIIGPLVNLLL--------NAEFEIKKEAAWA 391 (402)
Q Consensus 326 -~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~---~~i~~L~~ll~--------~~~~~v~~~a~~a 391 (402)
+++.+..++. ++.++..|+-+|..++.. .++....++.. ..+..++..+. +.+.++.+..+..
T Consensus 249 ~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~l 325 (1204)
T 3a6p_A 249 KLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQV 325 (1204)
T ss_dssp HHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHH
Confidence 6777776665 467899999999999973 24443333321 11234444432 2235666666666
Q ss_pred HHHhh
Q 015687 392 ISNAT 396 (402)
Q Consensus 392 L~nl~ 396 (402)
+..+.
T Consensus 326 l~~lg 330 (1204)
T 3a6p_A 326 LCALG 330 (1204)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.52 E-value=1.8 Score=36.14 Aligned_cols=166 Identities=11% Similarity=0.128 Sum_probs=100.6
Q ss_pred CcchHHHHhCCchHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhH
Q 015687 147 SENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS 215 (402)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~ 215 (402)
..+.+.+ ..+++..|+.+|.. .+......++.||..+.....+....+...+.+..+...+ .++++.
T Consensus 34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~~ 111 (233)
T 2f31_A 34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN 111 (233)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTSHH
T ss_pred cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCCch
Confidence 3455555 34667777776642 1456778899999999877766655555556777777777 778888
Q ss_pred HHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-C
Q 015687 216 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-H 294 (402)
Q Consensus 216 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~-~ 294 (402)
++..++..|..+|...... |..+.++..+. +... .-+..-+..++..+. +
T Consensus 112 ~r~~~leLL~~lc~~~~~~------G~~~~VL~Al~---------------~~~~--------~~e~~RF~~lv~~l~~~ 162 (233)
T 2f31_A 112 MMIDAAKLLSALCILPQPE------DMNERVLEAMT---------------ERAE--------MDEVERFQPLLDGLKSG 162 (233)
T ss_dssp HHHHHHHHHHHHHTCSSSS------CHHHHHHHHHH---------------HHHH--------HHTSCTTHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHhCCCCC------ChHHHHHHHHH---------------HHHH--------hCCcchHHHHHHHHhcC
Confidence 9999999999998774211 10222222221 1100 012233556666675 4
Q ss_pred CChhhHHHHHHHHHHhhcCChH------HHHHHHhCCChHHHHHHhcCCCchhHHH
Q 015687 295 PSPSVLIPALRTVGNIVTGDDM------QTQCIINHQALPCLLDLLTQNYKKSIKK 344 (402)
Q Consensus 295 ~~~~v~~~a~~~l~nl~~~~~~------~~~~i~~~~~l~~L~~ll~~~~~~~v~~ 344 (402)
.+...+..++..|..++.+.++ .+..+...|+.+.+-++=... ++.+..
T Consensus 163 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~-~~~L~~ 217 (233)
T 2f31_A 163 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE-NEDMKV 217 (233)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCC-CHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccC-CHHHHH
Confidence 4567788888888888876642 234455667766666554444 554443
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=94.32 E-value=2.1 Score=36.18 Aligned_cols=101 Identities=6% Similarity=0.080 Sum_probs=71.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
+-.+++.-+....+.+...+...+.++... ++. +. ..+++.++.+..+.+ .+++...+..+...+...++...
T Consensus 17 v~~lln~A~~~~~~~kl~~L~qa~el~~~~-dp~---ll-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~- 89 (257)
T 3gs3_A 17 VVDWCNELVIASPSTKCELLAKVQETVLGS-CAE---LA-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP- 89 (257)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHTTT-TGG---GH-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-
T ss_pred HHHHHHHhhhcCcHHHHHHHHHHHHHHHcc-CHh---HH-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH-
Confidence 344555444433368888999999976643 222 11 236788888877766 89999999999888864333222
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHh
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 184 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl 184 (402)
..++.|..+++++++.+...++.+.+++
T Consensus 90 ----~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 90 ----HVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp ----HHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3678888899999999999999888876
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=94.14 E-value=2.5 Score=38.19 Aligned_cols=145 Identities=12% Similarity=0.141 Sum_probs=92.8
Q ss_pred CcchHHHHhCCchHHHHHhhC-----------CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhH
Q 015687 147 SENTRVVIDHGAVPIFVRLLS-----------SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS 215 (402)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~-----------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~ 215 (402)
..+...++ .+++..|+.+|. ..+......++.||..+.....+....+-..+.+..+...+ .+..+.
T Consensus 100 ~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L-~s~~~~ 177 (383)
T 3eg5_B 100 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN 177 (383)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTC-CTTSHH
T ss_pred cHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHh-CCCchH
Confidence 45556665 466777777764 12457888899999999877666555555556788888887 778889
Q ss_pred HHHHHHHHHHHhhhCCC-CCchhhh------------hchHHHHHHhccC-CChhHHHHHHHHHHHhccCChHH------
Q 015687 216 MLRNATWTLSNFCRGKP-QPLFEQT------------RPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDK------ 275 (402)
Q Consensus 216 ~~~~a~~~L~~l~~~~~-~~~~~~~------------~~~l~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~~------ 275 (402)
++..++..|..+|.... ..-...+ ..-+..++..|.. .+.+....++..+..+..+.++.
T Consensus 178 ~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~l 257 (383)
T 3eg5_B 178 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI 257 (383)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999999999998753 2201111 1124556777765 56777777777776666554422
Q ss_pred HHHHHHhCcHHHHHHhcCC
Q 015687 276 IQAVIEAGVCPRLVELLRH 294 (402)
Q Consensus 276 ~~~~~~~~~i~~L~~~L~~ 294 (402)
...+...|+.+.+-. |..
T Consensus 258 R~ef~~~Gl~~il~~-lr~ 275 (383)
T 3eg5_B 258 RSELMRLGLHQVLQE-LRE 275 (383)
T ss_dssp HHHHHHTTHHHHHHH-HTT
T ss_pred HHHHHHCChHHHHHH-Hhc
Confidence 122345566555544 543
|
| >2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B | Back alignment and structure |
|---|
Probab=94.11 E-value=0.036 Score=31.39 Aligned_cols=38 Identities=37% Similarity=0.538 Sum_probs=27.8
Q ss_pred HHhhhccC-CCCchHHhhhhHHHHHHHHHHhhhHHHHhhhh
Q 015687 11 VRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRR 50 (402)
Q Consensus 11 ~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~kr~ 50 (402)
+|...||+ +...++..++| + ..+..|++|-+.++..|+
T Consensus 2 PR~sqYK~k~~~~~q~~rRr-~-~L~~QK~~R~D~~nhaR~ 40 (40)
T 2p8q_B 2 PRLSQYKSKYSSLEQSERRR-R-LLELQKSKRLDYVNHARR 40 (40)
T ss_dssp CCGGGTTCCCCSCSTTHHHH-H-HHHHHHHHHHHHHHTTTC
T ss_pred ccHHhhccccchhhHHHHHH-H-HHHHHHHHHHHHHHHhcC
Confidence 57889999 45544444444 4 688999999999887774
|
| >2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 | Back alignment and structure |
|---|
Probab=91.94 E-value=5 Score=36.86 Aligned_cols=231 Identities=11% Similarity=0.045 Sum_probs=123.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
+..|+..+.|+|+..+..--..|..+-.. -...+.++...+-..+.+++.......-..+.+.+++.|..|-.--...
T Consensus 164 i~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe 241 (449)
T 2npp_B 164 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 241 (449)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHS--CTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence 56788888899998888888888777542 3444455544455667777655432333456778888887663211111
Q ss_pred HHhCCchHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 153 VIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
-...=....|+.|.+.... .-..+-..++..+...++..... ++..|++.- ..++..-....+.-+..+...-
T Consensus 242 ehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~eleeile~~ 315 (449)
T 2npp_B 242 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEEILDVI 315 (449)
T ss_dssp HHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhC-CCCCchHHHHHHHHHHHHHHhC
Confidence 1111123344444443322 12234445555555444443222 233333332 2222222222333344444432
Q ss_pred CCCch-hhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcC-----CCChhhHHH
Q 015687 232 PQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLR-----HPSPSVLIP 302 (402)
Q Consensus 232 ~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~~L~-----~~~~~v~~~ 302 (402)
+...+ .....++..+..++.+++-.|.+.|+....| +.. -.++.. .++|.+...|. |=+..++..
T Consensus 316 ~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i-~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~l 389 (449)
T 2npp_B 316 EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----EYI-MSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGL 389 (449)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHH-HHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHH-HHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHH
Confidence 22222 2335677788888899888888887644321 111 222221 24566666553 225679999
Q ss_pred HHHHHHHhhcCChHH
Q 015687 303 ALRTVGNIVTGDDMQ 317 (402)
Q Consensus 303 a~~~l~nl~~~~~~~ 317 (402)
+..++.-+...++..
T Consensus 390 a~~vlk~l~e~d~~l 404 (449)
T 2npp_B 390 IYNALKLFMEMNQKL 404 (449)
T ss_dssp HHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHCHHH
Confidence 999998887766643
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=91.71 E-value=3.7 Score=36.97 Aligned_cols=162 Identities=15% Similarity=0.173 Sum_probs=104.7
Q ss_pred CChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHh--------cc
Q 015687 199 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL--------SD 270 (402)
Q Consensus 199 g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l--------~~ 270 (402)
++++.++.+. .+.+.++++.++.++...|.. .......+++.|..+|.++|+.+...++.+..++ +.
T Consensus 63 ~fl~~il~f~-~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~ 137 (386)
T 3o2t_A 63 NFLDEIIAFQ-ADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVK 137 (386)
T ss_dssp GGHHHHHGGG-GCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-cCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4778888777 667899999999999999864 2334577888999999988998887777665544 22
Q ss_pred CCh--HHHHHHHH--hCcHHHHHHhcCCCChhhHHHHHHHHHHhhc----CC-h-H---------------------HHH
Q 015687 271 GTN--DKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRTVGNIVT----GD-D-M---------------------QTQ 319 (402)
Q Consensus 271 ~~~--~~~~~~~~--~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~----~~-~-~---------------------~~~ 319 (402)
.+. +..+...+ ..+-..++.++.+.+..++..|+..+-.++- +. + . ...
T Consensus 138 ~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~ 217 (386)
T 3o2t_A 138 SRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYN 217 (386)
T ss_dssp C-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHH
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHH
Confidence 221 11111111 1344567777888899999999998887651 10 0 0 001
Q ss_pred HH--HhCCChHHHHHHhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHH
Q 015687 320 CI--INHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAII 365 (402)
Q Consensus 320 ~i--~~~~~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~ 365 (402)
.+ -..+++..|+.++.++. ++..-..+..+|++|+...|.....++
T Consensus 218 ~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl 266 (386)
T 3o2t_A 218 VLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVI 266 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 11 12377888999887641 344555677888888876666555544
|
| >3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.68 E-value=3 Score=35.93 Aligned_cols=137 Identities=11% Similarity=0.055 Sum_probs=86.3
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC--CChHHH
Q 015687 254 DDEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCL 330 (402)
Q Consensus 254 ~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~--~~l~~L 330 (402)
|.+....++..|..++-.-....+..- +..++..|+ +.....+.+++.|.++|+....++|.....+.+. .++..+
T Consensus 41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 555677788888777743333333222 223444444 3344567899999999999999999888877653 444444
Q ss_pred HHHhcC----C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC--CHHHHHHHHHHHHHhh
Q 015687 331 LDLLTQ----N--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNAT 396 (402)
Q Consensus 331 ~~ll~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~ 396 (402)
..-|.. . ....+.+.-+.+|.-|...+.. + ....+..|.+++... ++.+|..++..+..+-
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 433322 1 1335666667777777765321 1 134667777777776 8889998888887765
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=91.23 E-value=5 Score=36.30 Aligned_cols=132 Identities=13% Similarity=0.105 Sum_probs=80.3
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HH-HHHHH---------
Q 015687 254 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQ-TQCII--------- 322 (402)
Q Consensus 254 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~-~~-~~~i~--------- 322 (402)
+......++.||..+.......-..+-..+++..+...|.++++.++..++..|+.+|..+. .. ...++
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence 45677888899988886655543434445788999999999999999999999998887553 12 22232
Q ss_pred -hCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH--HHH----HHHHHcCCHHHHHHHhccCCHHHH
Q 015687 323 -NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV--NQI----QAIIEAGIIGPLVNLLLNAEFEIK 385 (402)
Q Consensus 323 -~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~--~~~----~~l~~~~~i~~L~~ll~~~~~~v~ 385 (402)
+..-+..++..+....+.+.+..+...+-.+..+.+ +.+ ..+...|+.+.+-.+-...++++.
T Consensus 151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK 220 (386)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHH
Confidence 224566677777655344555444444444444322 222 234456666555544333555443
|
| >3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* | Back alignment and structure |
|---|
Probab=90.04 E-value=6.5 Score=35.51 Aligned_cols=229 Identities=12% Similarity=0.064 Sum_probs=115.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
+..|+..+.|+|+..+...-..|..+-.. -.....++...+-..|..++.......-..+.+.+++.|..|-..-...
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~k--f~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLke 208 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 208 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchH
Confidence 56678888888888888777777776432 2334445544445566666654331222345666777666543211111
Q ss_pred HHhCCchHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 153 VIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
-...-....|+.|.+.... .-..+-..++......+|..... ++..+++.- ..++..-...-+.-+..+...-
T Consensus 209 ehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~Ele~iLe~~ 282 (403)
T 3fga_B 209 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEEILDVI 282 (403)
T ss_dssp HHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCcHHHHHHHHHHHHHHHhC
Confidence 1111122334444443322 22245555666565555543222 223333332 2222222222333344444432
Q ss_pred CCCch-hhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhc-----CCCChhhHHH
Q 015687 232 PQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL-----RHPSPSVLIP 302 (402)
Q Consensus 232 ~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~~L-----~~~~~~v~~~ 302 (402)
+...+ .....++..+..++.+++-.|.+.|+.... ++ .+-.++.. .++|.+...| .|=+..++..
T Consensus 283 ~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wn-----Ne-~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l 356 (403)
T 3fga_B 283 EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN-----NE-YIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGL 356 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG-----CH-HHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc-----cH-HHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 22222 233566777888888888888887764431 12 22222222 2445555444 2336788888
Q ss_pred HHHHHHHhhcCCh
Q 015687 303 ALRTVGNIVTGDD 315 (402)
Q Consensus 303 a~~~l~nl~~~~~ 315 (402)
+..++.-+...++
T Consensus 357 ~~~vlk~l~e~d~ 369 (403)
T 3fga_B 357 IYNALKLFMEMNQ 369 (403)
T ss_dssp HHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhCH
Confidence 8888887766544
|
| >3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* | Back alignment and structure |
|---|
Probab=89.10 E-value=13 Score=33.66 Aligned_cols=234 Identities=13% Similarity=0.061 Sum_probs=114.3
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
..++...+-.|+.++.++|+.=|+..-.+|.++-+.-...|..+... +-..+.+.+.......=....+.++..+..+.
T Consensus 124 ~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~-innif~~fiye~e~~~GIaeLLeilgsIinGf 202 (403)
T 3fga_B 124 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIINGF 202 (403)
T ss_dssp TTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHC
T ss_pred hhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHhcCcccCCCHHHHHHHHHHHHccc
Confidence 34445567889999999999999999999998876555455444331 22333443322211111234555556666655
Q ss_pred CCCc-hhhhhchHHHHHHhccCCChh-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 015687 232 PQPL-FEQTRPALPALERLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (402)
Q Consensus 232 ~~~~-~~~~~~~l~~L~~lL~~~~~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~n 309 (402)
..+- .....-...+|+++-....-. .......++......++.....+ +..|+.+==..+..=...-+.-+..
T Consensus 203 a~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~Ele~ 277 (403)
T 3fga_B 203 ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELEE 277 (403)
T ss_dssp CSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 2222 222222344455555443322 22333344444444444332211 2222222222233223334444555
Q ss_pred hhcCC-hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH-----HHhcCCHHHHHHHHHcCCHHHHHHHhccC-CH
Q 015687 310 IVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS-----NITAGNVNQIQAIIEAGIIGPLVNLLLNA-EF 382 (402)
Q Consensus 310 l~~~~-~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~-----nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~ 382 (402)
+.... +...+.+.. .++..+...+.++ ...|-+.|..... ++...+...+-.+ ++|.|.+....+ +.
T Consensus 278 iLe~~~~~~f~~i~~-~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li~~n~~~IlPi----i~p~L~~~~~~HWn~ 351 (403)
T 3fga_B 278 ILDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAAKILPI----MFPSLYRNSKTHWNK 351 (403)
T ss_dssp HHTTCCHHHHHHHHH-HHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHHHHHHH----HHHHHHHTTSCCSCH
T ss_pred HHHhCCHHHHHHHHH-HHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHHHHhHHHHHHH----HHHHHHHHHHHccCH
Confidence 55433 333332322 4566777777777 7777777665432 2222222222111 233344433332 67
Q ss_pred HHHHHHHHHHHHhhc
Q 015687 383 EIKKEAAWAISNATS 397 (402)
Q Consensus 383 ~v~~~a~~aL~nl~~ 397 (402)
.++..|..++.-+..
T Consensus 352 ~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 352 TIHGLIYNALKLFME 366 (403)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888888776643
|
| >2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 | Back alignment and structure |
|---|
Probab=86.73 E-value=19 Score=33.06 Aligned_cols=234 Identities=14% Similarity=0.063 Sum_probs=116.5
Q ss_pred chHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhh
Q 015687 149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~ 228 (402)
.....++...+-.|+.++.++|+.=|+....+|..+-+.-...|..+... +-..+.+.+.......=....+.++..+.
T Consensus 154 ~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSIi 232 (449)
T 2npp_B 154 IAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSII 232 (449)
T ss_dssp TGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHHH
T ss_pred hhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence 34556666788899999999999999999999988865544455544432 23334444422222222335566666666
Q ss_pred hCCCCC-chhhhhchHHHHHHhccCCChh-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHH
Q 015687 229 RGKPQP-LFEQTRPALPALERLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306 (402)
Q Consensus 229 ~~~~~~-~~~~~~~~l~~L~~lL~~~~~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~ 306 (402)
.+...+ ......-...+|+++.....-. .......++..+...++..... ++..|+.+==..+..=...-+.-
T Consensus 233 nGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~e 307 (449)
T 2npp_B 233 NGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNE 307 (449)
T ss_dssp SSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhCCCCCchHHHHHHHH
Confidence 665222 1222223344555555444322 2223334444434333333221 12223222212232222334444
Q ss_pred HHHhhcCC-hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHhcc---
Q 015687 307 VGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLN--- 379 (402)
Q Consensus 307 l~nl~~~~-~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~--- 379 (402)
|..+.... +...+.+.. .++..+...++++ ...|-+.|+....| +.+..++. ..++|.++..|..
T Consensus 308 leeile~~~~~ef~~i~~-~lF~~la~ci~S~-hfqVAErAL~~w~N------~~i~~li~~n~~~IlPii~p~L~~~s~ 379 (449)
T 2npp_B 308 LEEILDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYRNSK 379 (449)
T ss_dssp HHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCS-CHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHhCCHHHHHHHHH-HHHHHHHHHHcCC-CHHHHHHHHHHHCC------HHHHHHHHhchhhhHHhhHHHHHHHHH
Confidence 55555432 333333322 4566777777777 77777776644321 11122221 1134555555422
Q ss_pred -C-CHHHHHHHHHHHHHhh
Q 015687 380 -A-EFEIKKEAAWAISNAT 396 (402)
Q Consensus 380 -~-~~~v~~~a~~aL~nl~ 396 (402)
+ +..++..|..++.-+.
T Consensus 380 ~HWn~~V~~la~~vlk~l~ 398 (449)
T 2npp_B 380 THWNKTIHGLIYNALKLFM 398 (449)
T ss_dssp CCSSTTHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHH
Confidence 1 4567777777765443
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=85.01 E-value=1.6 Score=34.16 Aligned_cols=74 Identities=12% Similarity=0.061 Sum_probs=56.5
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~ 144 (402)
+++..+.+.|++.++.++..|+..|-.++..-......++....++..|+.++....++.++..++..+...+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 46778888899999999999999999887653233344666778889999988763448899888888766554
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=84.77 E-value=1.1 Score=33.92 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=54.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~ 144 (402)
+++..+.+.|++.++..+..|+..|-.++..-......++....++..|+.++...+ +.++..++..+...+.
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~-~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGH-PKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHH
Confidence 467788888999999999999998888876432233345666678888888887666 8898888888876553
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=84.27 E-value=1.9 Score=33.07 Aligned_cols=74 Identities=14% Similarity=-0.028 Sum_probs=57.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR-----DDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~~~~~~a~~~L~~l~~ 144 (402)
+++..+.+.|++.++..+..|+..|-.++..-......++....++..|++++.. ..++.++..++..+...+.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999998765323344667778899999999874 1237899998888877664
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=83.50 E-value=4.5 Score=41.58 Aligned_cols=188 Identities=12% Similarity=0.066 Sum_probs=113.0
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhcc---chhhHHHHHHHHHHHHhhhCC-CC
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLSNFCRGK-PQ 233 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~---~~~~~~~~~a~~~L~~l~~~~-~~ 233 (402)
++.-|+.+--+...+||..|-.+|......-+..+.. +++.+++.|.. ..+.+-.+-|+++|..=.... -.
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~ 208 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLM 208 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGG
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHh
Confidence 5667777778899999999999999998877666555 46778888755 445666677777665111111 22
Q ss_pred CchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccC--------------------C----hHHHHHH----------
Q 015687 234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG--------------------T----NDKIQAV---------- 279 (402)
Q Consensus 234 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~--------------------~----~~~~~~~---------- 279 (402)
.+......+++.|+.....+.+.++.-+-.+...+... + +..++..
T Consensus 209 ~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~ 288 (997)
T 1vsy_5 209 TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREY 288 (997)
T ss_dssp GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHH
T ss_pred cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888888887777766655444333222210 0 0001111
Q ss_pred -HH--hCcHHHHHHhc-CCCC--hhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHH
Q 015687 280 -IE--AGVCPRLVELL-RHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (402)
Q Consensus 280 -~~--~~~i~~L~~~L-~~~~--~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl 353 (402)
.+ .++...++... .... +.....+++.+.++....+. .....++..+++.+.++ .|.+|+.|..++..+
T Consensus 289 ~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 289 YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTK-HPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHH
Confidence 00 12333444554 2234 66777777776555533220 11223455677788888 899999999888777
Q ss_pred hc
Q 015687 354 TA 355 (402)
Q Consensus 354 ~~ 355 (402)
..
T Consensus 364 l~ 365 (997)
T 1vsy_5 364 CN 365 (997)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=83.02 E-value=2.3 Score=32.58 Aligned_cols=73 Identities=11% Similarity=0.003 Sum_probs=57.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcC------CCCHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR------DDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~------~~~~~~~~~a~~~L~~l~~ 144 (402)
+++..+.+.|++.++..+..|+..|-.++..-..+...++....++..|++++.. .+ +.++..++..+...+.
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~-~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS-EKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCC-HHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999888765423334567777889999999964 34 7899998888877665
|
| >3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* | Back alignment and structure |
|---|
Probab=80.70 E-value=1.5 Score=36.38 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=56.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~ 144 (402)
+++..|.+.|++.++.+++.|+..|-.++..-..+...++....++..|++++....++.++..++..+...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999998887654233345566777888888888654447889888888877654
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=80.68 E-value=3.8 Score=31.92 Aligned_cols=74 Identities=12% Similarity=0.067 Sum_probs=57.3
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
++..|.+-|.+.++.++-.|+.+|-.+..+ .+.++..+....+++.++.++....++.++..+...+.......
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 466677777888999999999888888766 35577777777788899998865467888888888877776654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 402 | ||||
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 3e-92 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 3e-10 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 5e-06 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 2e-58 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 1e-11 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 1e-08 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 4e-38 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 3e-16 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-13 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 1e-12 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 1e-08 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 3e-21 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 3e-18 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-13 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 6e-13 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 5e-11 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-10 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 3e-10 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-08 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 1e-12 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 7e-12 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 0.001 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 1e-11 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-08 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 5e-08 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 1e-04 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 4e-11 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 8e-08 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 6e-07 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 9e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 1e-05 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 7e-05 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 0.001 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 0.002 | |
| d1oyza_ | 276 | a.118.1.16 (A:) Hypothetical protein YibA {Escheri | 2e-04 |
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 284 bits (726), Expect = 3e-92
Identities = 215/405 (53%), Positives = 272/405 (67%), Gaps = 14/405 (3%)
Query: 10 EVRRSKYKVA--VDAEEGRRRREDNMVEIRKNKREESLLKKRR---------EGLQAHQP 58
E RR+ +K A+E RRRR+ VE+RK KR+E+L K+R +
Sbjct: 4 EYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESS 63
Query: 59 LTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR 118
++ ++ + LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR
Sbjct: 64 VSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPR 123
Query: 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 178
+EF+ + LQ EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+
Sbjct: 124 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAI 183
Query: 179 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFE 237
WALGNVAGDS RD VL A+ P+L FN + K S++R ATWTLSN CRGK PQP +
Sbjct: 184 WALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWS 242
Query: 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 297
ALP L +LI+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S
Sbjct: 243 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 302
Query: 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
V PALR VGNIVTG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 303 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGN 361
Query: 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSSW 402
QIQA+I+A +I PLV LL AE++ KKEA WAISNA+SGG
Sbjct: 362 TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR 406
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.3 bits (142), Expect = 3e-10
Identities = 39/190 (20%), Positives = 80/190 (42%), Gaps = 16/190 (8%)
Query: 125 RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 184
+ +Q A A+ NI +G T+VVI+ G +P LLSSP ++++++A W + N+
Sbjct: 298 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 357
Query: 185 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG----KPQPLFEQTR 240
+ + V+ L+P L + E A+ + A W +SN G + ++
Sbjct: 358 TAGNTEQIQAVIDAN-LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQ 416
Query: 241 PALPALERLIHSNDDEVLTDACWALSYL-----------SDGTNDKIQAVIEAGVCPRLV 289
+ L L+ D+ ++ AL + N+ + +AG ++
Sbjct: 417 GCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIF 476
Query: 290 ELLRHPSPSV 299
++ + +
Sbjct: 477 NCQQNENDKI 486
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.2 bits (108), Expect = 5e-06
Identities = 37/192 (19%), Positives = 73/192 (38%), Gaps = 17/192 (8%)
Query: 81 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALT 140
S + + + + VI +GV+P LS ++ EA W ++
Sbjct: 297 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK-ENIKKEACWTIS 355
Query: 141 NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV---LS 197
NI +G +E + VID +P V+LL +++A WA+ N + + D++ +S
Sbjct: 356 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVS 415
Query: 198 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-----GKPQPLFEQTRP-------ALPA 245
G + PL E A ++ L N + + + L +
Sbjct: 416 QGCIKPLCDLL-EIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK 474
Query: 246 LERLIHSNDDEV 257
+ + +D++
Sbjct: 475 IFNCQQNENDKI 486
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 194 bits (492), Expect = 2e-58
Identities = 170/335 (50%), Positives = 228/335 (68%), Gaps = 6/335 (1%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P + LP L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366
+GNIVTG D QTQ +I+ AL LL N K +I+KEA WT+SNITAG +QIQ ++
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVN 312
Query: 367 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSS 401
G++ LV +L A+F+ +KEAAWAI+N TSGG+
Sbjct: 313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV 347
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 63.7 bits (153), Expect = 1e-11
Identities = 57/279 (20%), Positives = 116/279 (41%), Gaps = 9/279 (3%)
Query: 81 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALT 140
S L T L ++P ++P + L +D ++ WA++
Sbjct: 155 LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV-LADSCWAIS 213
Query: 141 NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 200
+ G +E +V+ G VP V+LL + + A+ A+GN+ + + V+ GA
Sbjct: 214 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 273
Query: 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ-TRPALPALERLIHSNDDEVLT 259
+ + + K ++ + ATWT+SN G+ + + +P L ++ D +
Sbjct: 274 -LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 332
Query: 260 DACWALSYL-SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV-----TG 313
+A WA++ S GT ++I ++ G+ L+ LL ++ L + NI G
Sbjct: 333 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG 392
Query: 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352
+ + +I ++ L ++ +S+ K + I
Sbjct: 393 ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 431
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 54.0 bits (128), Expect = 1e-08
Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 9/136 (6%)
Query: 99 LSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHG 157
++ R I +V+ G+VP + + + Q EAAWA+TN S GT E ++ G
Sbjct: 299 ITAGRQDQIQQVVNHGLVPFLVG-VLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 357
Query: 158 AVPIFVRLLSSPTDDVREQAVWALGNVA------GDSPKCRDLVLSNGALMPLLAQFNEH 211
+ + LLS+ + + + A+ N+ G++ K ++ G L + H
Sbjct: 358 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL-DKIEALQRH 416
Query: 212 AKLSMLRNATWTLSNF 227
S+ + + + +
Sbjct: 417 ENESVYKASLNLIEKY 432
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 140 bits (353), Expect = 4e-38
Identities = 41/315 (13%), Positives = 88/315 (27%), Gaps = 29/315 (9%)
Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
+P+ +++LS D + Q A+ + + + V G + V LL SP +V++
Sbjct: 4 IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62
Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
A AL N+ S + + ++ + + T L N
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122
Query: 236 FEQTRPALPALERLI---------------HSNDDEVLTDACWALSYLSDGTNDKIQAVI 280
+R+I D EV +A L LS +
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182
Query: 281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN--- 337
+G+ L+ +++ + + ++ + L+ +N
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242
Query: 338 ----------YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 387
+ N + + I +NL+ ++ + E
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302
Query: 388 AAWAISNATSGGSSW 402
A +
Sbjct: 303 ACAGALQNLTASKGL 317
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.9 bits (190), Expect = 3e-16
Identities = 44/308 (14%), Positives = 92/308 (29%), Gaps = 28/308 (9%)
Query: 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 172
SG P++ F A L N++S + + G + + + +
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200
Query: 173 VR------EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-------HAKLSMLRN 219
R E + L N++ A + + M+ N
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260
Query: 220 ATWTLSNFCRGKPQPLFEQTRPAL--PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277
P+ L + S D L AL L+
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320
Query: 278 A-----VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 332
++ P++ LL+ + V+ + N+ ++ +Q P +
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378
Query: 333 LLTQNYKKS-----IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE-IKK 386
LLT + + I AC+T+ N+ A + + ++ ++NL ++ +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438
Query: 387 EAAWAISN 394
A +S+
Sbjct: 439 AARLLLSD 446
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (167), Expect = 2e-13
Identities = 35/225 (15%), Positives = 73/225 (32%), Gaps = 14/225 (6%)
Query: 141 NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 200
+ + + + S+ +D + +PK + + A
Sbjct: 225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA 284
Query: 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR------PALPALERLIHSND 254
+ L + K + L L N K ++ LP + RL+ S +
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344
Query: 255 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH------PSPSVLIPALRTVG 308
+V+ LS +S + + V+ V P + LL S +L A TV
Sbjct: 345 SDVVRSGASLLSNMS--RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402
Query: 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353
N++ + + L +++L + + A +S++
Sbjct: 403 NLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.4 bits (160), Expect = 1e-12
Identities = 25/208 (12%), Positives = 59/208 (28%), Gaps = 15/208 (7%)
Query: 199 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP-ALPALERLIHSNDDEV 257
G +P Q+ + + + C + + + L L+ S + V
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60
Query: 258 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317
A AL L + V LLR + + L + ++ D
Sbjct: 61 QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120
Query: 318 TQCIINHQALPCLLDLL--------------TQNYKKSIKKEACWTISNITAGNVNQIQA 363
+ +I ++ + + A + N+++ + +
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180
Query: 364 IIEAGIIGPLVNLLLNAEFEIKKEAAWA 391
+G+I L+ + N + +
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSV 208
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (129), Expect = 1e-08
Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 9/130 (6%)
Query: 108 NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS 167
++ +P+ + + A L+N++ V+ + P RLL+
Sbjct: 325 LIGLKEKGLPQIARL-LQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLT 381
Query: 168 S------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 221
S ++D+ A + + N+ P+ S+ L ++ A A
Sbjct: 382 SHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441
Query: 222 WTLSNFCRGK 231
LS+ K
Sbjct: 442 LLLSDMWSSK 451
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.5 bits (223), Expect = 3e-21
Identities = 46/260 (17%), Positives = 89/260 (34%), Gaps = 9/260 (3%)
Query: 101 IERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVP 160
+E+ V+ + P E D Q + A L ++ +N +
Sbjct: 4 VEQMKSCLRVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCE-NMDNAADFCQLSGMH 61
Query: 161 IFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRN 219
+ V R L + +R +A +G + + ++ VL GAL LL + A ++
Sbjct: 62 LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVK 121
Query: 220 ATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 278
A + +S R + L L R + ++ + + L L G +
Sbjct: 122 ALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT 181
Query: 279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-----HQALPCLLDL 333
+ G+ +LV L+R L + ++VT + + L L
Sbjct: 182 LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQL 241
Query: 334 LTQNYKKSIKKEACWTISNI 353
L Q+ + + E C +
Sbjct: 242 LQQHEEYQEELEFCEKLLQT 261
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.2 bits (206), Expect = 3e-18
Identities = 62/337 (18%), Positives = 114/337 (33%), Gaps = 12/337 (3%)
Query: 70 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI--QSGVVPRFIEFLSRDD 127
++P + + +D+ + A +L E I +V + + +
Sbjct: 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE---ASRHAIMRSPQMVSAIVRTMQNTN 72
Query: 128 FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
+ A L N++ E + G +P V++L SP D V A+ L N+
Sbjct: 73 DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 131
Query: 188 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE 247
+ V G L ++A N+ + + L AL
Sbjct: 132 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 191
Query: 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
++ + E L + + + A++EAG L L PS ++ L T+
Sbjct: 192 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251
Query: 308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 367
N+ + L L L + ++ A +SN+T N + +
Sbjct: 252 RNLSD----AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 307
Query: 368 GIIGPLVNLLLNAEF--EIKKEAAWAISNATSGGSSW 402
G I LV +L A +I + A A+ + TS
Sbjct: 308 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA 344
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.2 bits (167), Expect = 2e-13
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 1/123 (0%)
Query: 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL 331
N + A + P L +LL V+ A V + + + + + Q + ++
Sbjct: 6 INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 65
Query: 332 DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 391
+ + T+ N++ AI ++G I LV +L + + A
Sbjct: 66 RTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITT 124
Query: 392 ISN 394
+ N
Sbjct: 125 LHN 127
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.0 bits (164), Expect = 6e-13
Identities = 30/199 (15%), Positives = 58/199 (29%), Gaps = 23/199 (11%)
Query: 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD 171
+P ++ L L + N+A N + + GA+P V+LL
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQ 411
Query: 172 DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231
D + + ++ T L R
Sbjct: 412 DTQRRTSMGGTQ---------------------QQFVEGVRMEEIVEGCTGALHILARDV 450
Query: 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 291
+ + +P +L++S + + A L L+ + +A+ G L EL
Sbjct: 451 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTEL 509
Query: 292 LRHPSPSVLIPALRTVGNI 310
L + V A + +
Sbjct: 510 LHSRNEGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.8 bits (148), Expect = 5e-11
Identities = 51/319 (15%), Positives = 98/319 (30%), Gaps = 25/319 (7%)
Query: 99 LSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA 158
L+ ++ SG + + + +L + + S S N +++ G
Sbjct: 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLL-WTTSRVLKVLSVCSSNKPAIVEAGG 228
Query: 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 218
+ L+ P+ + + +W L N++ + K + G L+ LL + +
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 288
Query: 219 NATWTLSNFCRGKPQPLFEQTRPALPAL--ERLIHSNDDEVLTDACWALSYLSDGTNDKI 276
+ N + K AL + E A L+
Sbjct: 289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ 348
Query: 277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336
AV P +V+LL PS LI A + + + A+P L+ LL +
Sbjct: 349 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 408
Query: 337 NYKK---------------------SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN 375
++ I + + + N+ I I V
Sbjct: 409 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR-IVIRGLNTIPLFVQ 467
Query: 376 LLLNAEFEIKKEAAWAISN 394
LL + I++ AA +
Sbjct: 468 LLYSPIENIQRVAAGVLCE 486
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.3 bits (144), Expect = 2e-10
Identities = 42/273 (15%), Positives = 91/273 (33%), Gaps = 28/273 (10%)
Query: 127 DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNV 184
D + AA L+N+ +N +V G + VR + +D+ E A+ AL ++
Sbjct: 278 DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 337
Query: 185 AGDS---PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP 241
++ V + L ++ + + +++ + N + +
Sbjct: 338 TSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG 397
Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
A+P L +L+ + + +++ ++E
Sbjct: 398 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG---------------- 441
Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 361
AL I+ D I +P + LL + ++I++ A + +
Sbjct: 442 -ALH----ILARDVHNRIVIRGLNTIPLFVQLL-YSPIENIQRVAAGVLCELAQDKEAA- 494
Query: 362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
+AI G PL LL + + AA +
Sbjct: 495 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 527
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.5 bits (142), Expect = 3e-10
Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 44/172 (25%)
Query: 98 LLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 157
L+ + + ++ + +F+ ++ AL +A N V+
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLN 460
Query: 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 217
+P+FV+LL SP ++++ A L +A D + + + + G
Sbjct: 461 TIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEG------------------ 501
Query: 218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269
A L L+HS ++ V T A L +S
Sbjct: 502 ------------------------ATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.5 bits (129), Expect = 1e-08
Identities = 33/219 (15%), Positives = 66/219 (30%), Gaps = 23/219 (10%)
Query: 135 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194
A LT+ V H +P+ V+LL P+ +A L P
Sbjct: 333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAP 392
Query: 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND 254
+ GA+ L+ + + R + + +
Sbjct: 393 LREQGAIPRLVQLLVRAHQDTQRRTSM--------------------GGTQQQFVEGVRM 432
Query: 255 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 314
+E++ AL L+ +++ + P V+LL P ++ A + +
Sbjct: 433 EEIVEGCTGALHILARDVHNR-IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 491
Query: 315 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353
+ I A L +LL + + A + +
Sbjct: 492 EAAEA-IEAEGATAPLTELLHSRNEG-VATYAAAVLFRM 528
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.4 bits (155), Expect = 7e-12
Identities = 48/289 (16%), Positives = 91/289 (31%), Gaps = 29/289 (10%)
Query: 73 LPAMVAGVWSDDRN--IQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 130
L A++ G+ ++ + ++L AT L ++ E + ++ E D +
Sbjct: 173 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TR 231
Query: 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190
++ A L I S + + I + + S D+V Q + NV +
Sbjct: 232 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 291
Query: 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ------------ 238
++ L+ L+ + + +
Sbjct: 292 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 351
Query: 239 -----------TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 287
LP ++ I + D A A + +G + P
Sbjct: 352 MLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 411
Query: 288 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336
L+EL++ PS V A TVG I ++ + IN L LL L +
Sbjct: 412 LIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIE 457
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 0.001
Identities = 29/192 (15%), Positives = 56/192 (29%), Gaps = 7/192 (3%)
Query: 60 TNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
+ +D L+ + + + + S + +VP
Sbjct: 266 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 325
Query: 120 IEFLSRDDFPQL--QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 177
+ L++ D + A + I +P + +P R+ A
Sbjct: 326 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAA 385
Query: 178 VWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
V A G + G P ++ MP L + + + + A WT+ C P+
Sbjct: 386 VMAFGCILEGPEPSQLKPLVIQ--AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI 443
Query: 237 EQTR--PALPAL 246
P L L
Sbjct: 444 NDVYLAPLLQCL 455
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.0 bits (154), Expect = 1e-11
Identities = 33/299 (11%), Positives = 94/299 (31%), Gaps = 13/299 (4%)
Query: 95 FRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 154
+L + + + R +++ + +Q EA + ++ S
Sbjct: 111 IGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH 170
Query: 155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL 214
+ + L+SP VR++ + ALG++ ++ + LL++ +++ +
Sbjct: 171 PS-ILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN----IVFVDLIEHLLSELSKNDSM 225
Query: 215 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274
S R ++ R + E +P + + + +DDE+ A
Sbjct: 226 STTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 285
Query: 275 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 334
++ + + ++ L + P + M +
Sbjct: 286 EVYPHVST-IINICLKYLTYD------PNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD 338
Query: 335 TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 393
+ +++ A + + + + + + L++ E +K + A
Sbjct: 339 DDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKT-VSPALISRFKEREENVKADVFHAYL 396
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.6 bits (127), Expect = 3e-08
Identities = 48/340 (14%), Positives = 99/340 (29%), Gaps = 50/340 (14%)
Query: 30 EDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQL 89
+ E+ R L + +N L M+ G
Sbjct: 729 GSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALT 788
Query: 90 DATTQFRKLLSIERSPPINEVIQSGVVPRFI-EFLSRDDFPQLQFEAAWALTNIASGTSE 148
+ + + VV +FI + + ++ A +L +
Sbjct: 789 HKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDL 848
Query: 149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA---------------GDSPKCRD 193
+ ++ + + + SSP+++V+ A +ALG+++ PK +
Sbjct: 849 SGQLEL----KSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQY 904
Query: 194 LVLSN-----------------GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
L+L + + LL + E A+ L P+ L
Sbjct: 905 LLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL- 963
Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
LP L+ + S + A+ + I +++ ++ L P
Sbjct: 964 ------LPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDPD 1016
Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLL 334
+V AL T + + I + LP L +
Sbjct: 1017 LNVRRVALVTFNSAA---HNKPSLIRDLLDTVLPHLYNET 1053
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (125), Expect = 5e-08
Identities = 40/267 (14%), Positives = 84/267 (31%), Gaps = 10/267 (3%)
Query: 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188
+F A L S + V + ++LL +V+ AV LG +
Sbjct: 17 KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV 76
Query: 189 PKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 245
+ + + + L + E L+ L G +
Sbjct: 77 KEYQVETIVD-TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRL 135
Query: 246 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305
+ D V +A ++ + + + + L+ L P +V +
Sbjct: 136 TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRKRTII 194
Query: 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 365
+G++V + + LL L++N S + I+ I+ ++I +
Sbjct: 195 ALGHLVMSCGNI----VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL 250
Query: 366 EAGIIGPLVNLLLNAEFEIKKEAAWAI 392
E II +V + E+++ A
Sbjct: 251 EK-IIPLVVKFCNVDDDELREYCIQAF 276
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 1e-04
Identities = 29/178 (16%), Positives = 54/178 (30%), Gaps = 15/178 (8%)
Query: 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 141
+ + L + + S+ P E I + ++ + A L
Sbjct: 900 PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLK-----HCECAEEGTRNVVAECLGK 954
Query: 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 201
+ E +P L S + R V A+ D P+ D +L N
Sbjct: 955 LTLIDPET--------LLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN--C 1004
Query: 202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT 259
+ + E L++ R A T ++ KP + + LP L + +
Sbjct: 1005 IGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIRE 1062
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (123), Expect = 8e-08
Identities = 46/321 (14%), Positives = 97/321 (30%), Gaps = 34/321 (10%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR-DDFPQL 131
L +V L L ++P I+ + D +
Sbjct: 521 LDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKD 580
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
F L+++A+ + P++ R ++ + + + ++P
Sbjct: 581 LFPLLECLSSVATALQSGFLPYCE----PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDK 636
Query: 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 251
++++ L L + + SN L + + +
Sbjct: 637 DFMIVALDLLSGLAEGLGGNIE------QLVARSNI---------------LTLMYQCMQ 675
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
EV + L L+ ++ I P L L SV A +G I
Sbjct: 676 DKMPEVRQSSFALLGDLTKACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEIS 734
Query: 312 --TGDDMQTQCIINHQALPCLLDLL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 368
G +MQ L L++++ N K++ + TI + ++ +++
Sbjct: 735 IQMGIEMQPYI---PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQ- 790
Query: 369 IIGPLVNLLLNAEFEIKKEAA 389
I P L N +K++A
Sbjct: 791 FIRPWCTSLRNIRDNEEKDSA 811
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 6e-07
Identities = 49/309 (15%), Positives = 99/309 (32%), Gaps = 13/309 (4%)
Query: 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 141
S+D + + + + + + + + P ++ +T
Sbjct: 57 SEDEPTRSLSGLILKNNVK-AHFQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITT 114
Query: 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG-- 199
IAS +P LL S + E A AL + DS + D + +
Sbjct: 115 IASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPL 170
Query: 200 -ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVL 258
++P QF +H+ + +A ++ F + Q L L L + EV
Sbjct: 171 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVR 230
Query: 259 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 318
+ C AL L + D++ + + +++ + +V AL +T +
Sbjct: 231 KNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENV---ALEACEFWLTLAEQPI 286
Query: 319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 378
+ + LP L+ +L K S + + I
Sbjct: 287 CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQ 346
Query: 379 NAEFEIKKE 387
+ E I++E
Sbjct: 347 HDEDGIEEE 355
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 9e-06
Identities = 41/333 (12%), Positives = 93/333 (27%), Gaps = 22/333 (6%)
Query: 83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNI 142
D+ + + + S + V + ++P + L F + +
Sbjct: 360 DEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVL 419
Query: 143 ASGTSENTRVVIDHGA--VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 200
+ + +I + +P ++ LS VR W L A
Sbjct: 420 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 479
Query: 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTD 260
+ LL + + K + A + L L L + L
Sbjct: 480 MTELLKRILDSNK-RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLI 538
Query: 261 ACWALSYLSDGTNDKI-QAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDM- 316
A+ L+D + + + P L++ L P L + ++ T
Sbjct: 539 LYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSG 598
Query: 317 --------------QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 362
Q + L + K A +S + G I+
Sbjct: 599 FLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE 658
Query: 363 AII-EAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
++ + I+ + + + E+++ + + +
Sbjct: 659 QLVARSNILTLMYQCMQDKMPEVRQSSFALLGD 691
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 1e-05
Identities = 21/154 (13%), Positives = 48/154 (31%), Gaps = 9/154 (5%)
Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
+ D ++ A L + + +P + + P R
Sbjct: 442 LNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW---AHATIIPKVLAMSGDPNYLHRM 498
Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
++ + ++ + D+ + ++P + + ++ N +L
Sbjct: 499 TTLFCINVLSEVCGQ--DITTKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST 554
Query: 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269
+ P LE+L D +V A AL+ LS
Sbjct: 555 LQSE--VKPILEKLTQDQDVDVKYFAQEALTVLS 586
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (98), Expect = 7e-05
Identities = 24/194 (12%), Positives = 59/194 (30%), Gaps = 12/194 (6%)
Query: 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ 176
I L+ D +++ + +A D + + L +RE
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREA 460
Query: 177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
A L + K ++ ++P + + + ++ Q +
Sbjct: 461 ATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516
Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
+ LP + R+ V + +L + ++ +++ V P L +L +
Sbjct: 517 TKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQD 571
Query: 297 PSVLIPALRTVGNI 310
V A + +
Sbjct: 572 VDVKYFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 0.001
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 109 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS 168
++ ++P + D ++F A +L I +T + PI +L
Sbjct: 514 DITTKHMLPTVLRMAG-DPVANVRFNVAKSLQKIGPILDNST---LQSEVKPILEKLTQD 569
Query: 169 PTDDVREQAVWALGNVA 185
DV+ A AL ++
Sbjct: 570 QDVDVKYFAQEALTVLS 586
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (86), Expect = 0.002
Identities = 16/139 (11%), Positives = 47/139 (33%), Gaps = 8/139 (5%)
Query: 47 KKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP 106
+ R ++ L ++ + +A + I+ AT+ +KL+
Sbjct: 417 RVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW 476
Query: 107 INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL 166
+ I +P+ + ++ + + ++ ++ + +P +R+
Sbjct: 477 AHATI----IPKVLAMSGDPNYLHRM-TTLFCINVLSEVCGQD---ITTKHMLPTVLRMA 528
Query: 167 SSPTDDVREQAVWALGNVA 185
P +VR +L +
Sbjct: 529 GDPVANVRFNVAKSLQKIG 547
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Score = 40.2 bits (92), Expect = 2e-04
Identities = 24/254 (9%), Positives = 57/254 (22%), Gaps = 37/254 (14%)
Query: 125 RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 184
D + +A L AV + + S R+ + LG +
Sbjct: 29 DDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQI 77
Query: 185 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 244
+ L + A + + C+ P + +
Sbjct: 78 KICKKCEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVE 127
Query: 245 ALERLIHSNDDEVLTDACWALSYLSDGT-----------NDKIQAVIEAGVCPRLVELLR 293
+ V +A+S ++D + A
Sbjct: 128 QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNS 187
Query: 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353
+ + + + + L L D L +N ++ + +
Sbjct: 188 DIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN---TVYDDIIEAAGEL 244
Query: 354 TAGNVNQIQAIIEA 367
G+ + +
Sbjct: 245 --GDKTLLPVLDTM 256
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 402 | |||
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 100.0 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 100.0 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 100.0 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 100.0 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.92 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.87 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.84 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.59 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.53 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.5 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.49 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 99.47 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.45 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 99.39 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.35 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.34 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 99.34 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.19 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.19 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.06 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.02 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.97 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.97 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 98.93 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 98.86 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.82 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 98.77 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 98.67 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 98.49 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 97.75 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 97.57 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 97.55 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 96.64 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 96.51 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 96.35 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 96.16 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 95.83 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 95.73 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 94.17 | |
| d2jaka1 | 343 | Serine/threonine-protein phosphatase 2A regulatory | 91.34 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 88.24 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 85.68 | |
| d2jaka1 | 343 | Serine/threonine-protein phosphatase 2A regulatory | 84.74 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 82.87 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 80.86 |
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.1e-54 Score=415.91 Aligned_cols=392 Identities=55% Similarity=0.827 Sum_probs=343.7
Q ss_pred ccHHHhhhccC-CC-CchHHhhhhHHHHHHHHHHhhhHHHHhhhhccccCCCC-Ccc--------hhhhhhhhhccHHHH
Q 015687 8 RTEVRRSKYKV-AV-DAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQP-LTN--------SAALDNKKLESLPAM 76 (402)
Q Consensus 8 ~~~~~~~~~k~-~~-~~~~~r~~r~~~~~~lRk~~r~~~~~~kr~~~~~~~~~-~~~--------~~~~~~~~~~~i~~l 76 (402)
.+++|++.||+ |+ +++|+||||+++++||||+||++.++|||+.....+.. ++. ......+..+.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~e~r~kR~~~~veiRk~kr~e~l~kkR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (503)
T d1wa5b_ 2 VPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM 81 (503)
T ss_dssp CCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHH
T ss_pred CchHHhHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCcccccccccchhccccchhhHHHHHHHHHHHHH
Confidence 57889999999 75 99999999999999999999999999999764322211 110 011112233578999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhC
Q 015687 77 VAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH 156 (402)
Q Consensus 77 ~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 156 (402)
++.++++|...+..|+..++++++.+..++++.+++.|++|.|+++++.+.++.++..|+|+|++++.+++..+..+.+.
T Consensus 82 ~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~ 161 (503)
T d1wa5b_ 82 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA 161 (503)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 99999999999999999999999888888999999999999999999876558899999999999999888899999999
Q ss_pred CchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC-CCCc
Q 015687 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL 235 (402)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 235 (402)
|+++.++.+|.+++.++++.|+|+|+||+.+++.+++.+.+.|++++++.++ .+.+..+++.++|++.+++.+. +...
T Consensus 162 g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~~~~~~~~ 240 (503)
T d1wa5b_ 162 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD 240 (503)
T ss_dssp TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhcCCccchH
Confidence 9999999999999999999999999999999999999999999999999999 6677889999999999999886 5566
Q ss_pred hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 015687 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (402)
Q Consensus 236 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~ 315 (402)
.....+++|.++.++.+.|++++..++|++.+++...++.+..+++.|+++.++.++.++++.++.+++.++++++.+.+
T Consensus 241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~ 320 (503)
T d1wa5b_ 241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 320 (503)
T ss_dssp HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH
Confidence 67778999999999999999999999999999999988888889999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 015687 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (402)
Q Consensus 316 ~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 395 (402)
..+..+++.|+++.+..++.++ ++.++++++|+|+|++.++++++..+++.|+++.++.++.+++++++++|+|+|+|+
T Consensus 321 ~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl 399 (503)
T d1wa5b_ 321 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 399 (503)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHH
Confidence 9999999999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCC
Q 015687 396 TSGGSS 401 (402)
Q Consensus 396 ~~~~~~ 401 (402)
+.+++.
T Consensus 400 ~~~~~~ 405 (503)
T d1wa5b_ 400 SSGGLQ 405 (503)
T ss_dssp HHHTTT
T ss_pred Hhcccc
Confidence 987753
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.2e-38 Score=299.63 Aligned_cols=329 Identities=52% Similarity=0.875 Sum_probs=303.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
..++.+++.+++++++.+..|+..++++++...+++++.+++.|++|.|+++|++.++++++..|+++|.+++.++++.+
T Consensus 13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~ 92 (434)
T d1q1sc_ 13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 92 (434)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence 57899999999999999999999999999877677788999999999999999876558899999999999999888899
Q ss_pred HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccch----hhHHHHHHHHHHHH
Q 015687 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSN 226 (402)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~----~~~~~~~a~~~L~~ 226 (402)
..+++.|+++.|+.+|.+++.++++.|+++|+|++.+++..+..+.+.|+++.++.++.... .....+.++|++.+
T Consensus 93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~ 172 (434)
T d1q1sc_ 93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 172 (434)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999995432 23567889999999
Q ss_pred hhhCC-CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHH
Q 015687 227 FCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305 (402)
Q Consensus 227 l~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~ 305 (402)
++... +........+++|.+..++.+++++++..++|++.+++..+++....+...|+++.++.++.++++.++..+++
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~ 252 (434)
T d1q1sc_ 173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 252 (434)
T ss_dssp HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhh
Confidence 99887 44555666889999999999999999999999999999988888888888999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 015687 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385 (402)
Q Consensus 306 ~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 385 (402)
++++++.+++.....+++.|+++.+..++.++ ++.++..++|+|+|++.++++....+.+.|+++.++.++.+++++++
T Consensus 253 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~ 331 (434)
T d1q1sc_ 253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 331 (434)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHH
T ss_pred hhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHH
Confidence 99999999998899999999999999999998 99999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCC
Q 015687 386 KEAAWAISNATSGGS 400 (402)
Q Consensus 386 ~~a~~aL~nl~~~~~ 400 (402)
..|+|+|+|++.+++
T Consensus 332 ~~a~~~l~nl~~~~~ 346 (434)
T d1q1sc_ 332 KEAAWAITNYTSGGT 346 (434)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999987764
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.6e-34 Score=274.24 Aligned_cols=324 Identities=27% Similarity=0.364 Sum_probs=291.1
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
|.+|.++..+++ .++..+..|+++|.++.+.. ......+.+.|+++.++.+|.+++ .+++..|+|+|+||+..+++.
T Consensus 119 g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a~~~L~nia~~~~~~ 196 (503)
T d1wa5b_ 119 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY 196 (503)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhHHHHHHHHHHHHhhhhHHH
Confidence 679999999985 56789999999999997654 455667889999999999999988 899999999999999988899
Q ss_pred hHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
+..+.+.|+++.|+.++.+.+..++..++|+|.|++...+.........++++.++.++ .+.+.+++..++|++.+++.
T Consensus 197 r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~~ 275 (503)
T d1wa5b_ 197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD 275 (503)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999977655555556678999999999 77889999999999999998
Q ss_pred CCCCC-chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHH
Q 015687 230 GKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (402)
Q Consensus 230 ~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~ 308 (402)
..+.. ......++++.++.++.++++.+...++.++++++.+.+.....+.+.|+++.+..++.++++.++..++++++
T Consensus 276 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~ 355 (503)
T d1wa5b_ 276 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 355 (503)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 75322 22334789999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 015687 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385 (402)
Q Consensus 309 nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 385 (402)
|++.+++.....+++.|+++.++.++.++ ++.++.+|+|+|+|++. ..++.+..+++.|+++.|+++|...++++.
T Consensus 356 nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~ 434 (503)
T d1wa5b_ 356 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 434 (503)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred HHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHH
Confidence 99999999999999999999999999998 89999999999999996 346778899999999999999999999999
Q ss_pred HHHHHHHHHhhcC
Q 015687 386 KEAAWAISNATSG 398 (402)
Q Consensus 386 ~~a~~aL~nl~~~ 398 (402)
..++.+|.++...
T Consensus 435 ~~~L~~l~~ll~~ 447 (503)
T d1wa5b_ 435 EVTLDALENILKM 447 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998643
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.6e-32 Score=257.37 Aligned_cols=324 Identities=28% Similarity=0.444 Sum_probs=287.3
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
|.+|.|++.|++ ++++++..|+++|.++.+.. +.....+++.|+++.|+++|.+++ ++++..|+++|++++.++++.
T Consensus 56 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~L~nl~~~~~~~ 133 (434)
T d1q1sc_ 56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF 133 (434)
T ss_dssp TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCC-HHHHHHHHHHHHHHhccchHH
Confidence 789999999975 56789999999999997653 456678899999999999999988 899999999999999988888
Q ss_pred hHHHHhCCchHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHH
Q 015687 150 TRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 224 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L 224 (402)
+..+.+.|+++.|+.++...+ ......++|++.+++...+.........++++.++.++ .+.+++++..++|++
T Consensus 134 ~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~a~~~l 212 (434)
T d1q1sc_ 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI 212 (434)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hccccchhhhHHhhh
Confidence 899999999999999997643 35567889999999987765555556667888899888 778889999999999
Q ss_pred HHhhhCCCCC-chhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHH
Q 015687 225 SNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 303 (402)
Q Consensus 225 ~~l~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a 303 (402)
.+++...+.. ......+++|.+++++.+++++++..+++++.+++.+++.....+++.|+++.++.++.++++.++..+
T Consensus 213 ~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a 292 (434)
T d1q1sc_ 213 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 292 (434)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred cccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHH
Confidence 9999875322 223346899999999999999999999999999998888888889999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCH
Q 015687 304 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEF 382 (402)
Q Consensus 304 ~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~ 382 (402)
++++++++.+.......+.+.|+++.++.++.++ ++.++..|+|+|+|++. ++++.+..+++.|+++.|++++.++++
T Consensus 293 ~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~ 371 (434)
T d1q1sc_ 293 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 371 (434)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCH
T ss_pred HHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCH
Confidence 9999999999888889899999999999999998 99999999999999997 578888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 015687 383 EIKKEAAWAISNATSG 398 (402)
Q Consensus 383 ~v~~~a~~aL~nl~~~ 398 (402)
+++..++++|.++...
T Consensus 372 ~~~~~~l~~l~~ll~~ 387 (434)
T d1q1sc_ 372 KIIQVILDAISNIFQA 387 (434)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998753
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.2e-29 Score=244.09 Aligned_cols=320 Identities=21% Similarity=0.234 Sum_probs=275.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHh-hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
+.+|.|++.|+++|..++..|+..+.++... +.....++ ..|+++.|+++|.+.++++++..|+++|.+++.+ ++.
T Consensus 17 ~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~--~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~-~~~ 93 (529)
T d1jdha_ 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKK--EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REG 93 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--cHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chh
Confidence 5799999999999999999999999999643 24444444 4578999999998755489999999999999974 888
Q ss_pred hHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
+..+++.|++|.|+.+|++++++++..|+++|+|++.+.+..+..+.+.|+++.|+.++ ++++++++..+++++.+++.
T Consensus 94 ~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~ 172 (529)
T d1jdha_ 94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHH-HccChHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999888889999999999999999 77889999999999999997
Q ss_pred CCC-CCchhhhhchHHHHHHhccC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 015687 230 GKP-QPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (402)
Q Consensus 230 ~~~-~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l 307 (402)
..+ ........++++.++.++.+ +++.++..+++++.+++...+ ....+++.|+++.|+.++.+++..++..+++++
T Consensus 173 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~-~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l 251 (529)
T d1jdha_ 173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251 (529)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT-HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcccc-ccchhhhhhhhhhHHHHhcccchhhhhhhhhHH
Confidence 753 22334447889999999965 457889999999999987554 446789999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhc--cCCHHHH
Q 015687 308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL--NAEFEIK 385 (402)
Q Consensus 308 ~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~ 385 (402)
.++....... ....|+++.|++++.++ ++.++..|+++|+|++.++++....+.+.|+++.|+..+. .+.++++
T Consensus 252 ~~ls~~~~~~---~~~~~~i~~Lv~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~ 327 (529)
T d1jdha_ 252 RNLSDAATKQ---EGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 327 (529)
T ss_dssp HHHHTTCTTC---SCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred Hhccccccch---hhhhhcchhhhhhcccc-cHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHH
Confidence 9997654321 12247899999999988 9999999999999999988998888999999999999885 3667899
Q ss_pred HHHHHHHHHhhcCC
Q 015687 386 KEAAWAISNATSGG 399 (402)
Q Consensus 386 ~~a~~aL~nl~~~~ 399 (402)
..|+++|.|++...
T Consensus 328 ~~a~~aL~~l~~~~ 341 (529)
T d1jdha_ 328 EPAICALRHLTSRH 341 (529)
T ss_dssp HHHHHHHHHHTSSS
T ss_pred HHHHHHhhcccchh
Confidence 99999999998654
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.9e-28 Score=234.32 Aligned_cols=323 Identities=15% Similarity=0.163 Sum_probs=278.7
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcc
Q 015687 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (402)
Q Consensus 71 ~~i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 149 (402)
+.++.++..|.+ ++++.+..|+.+|..+.. +.+....+++.|+++.|+.+|++++ ++++..|+++|.+++.+++..
T Consensus 59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~~~ 135 (529)
T d1jdha_ 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSH--HREGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC--CchhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccchh
Confidence 458899999974 678999999999999853 2566778999999999999999988 999999999999999988888
Q ss_pred hHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
+..+.+.|+++.|+.+|++++++++..++++|++++..++..+..+...|+++.++.++..+++..++..+++++.+++.
T Consensus 136 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~ 215 (529)
T d1jdha_ 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred hhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence 88899999999999999999999999999999999998888889999999999999999777778899999999999997
Q ss_pred CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 015687 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (402)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~n 309 (402)
...........++++.+..++.+++.++...+++++.+++...... ....|+++.|+.++.+++..++..++++|++
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~ 292 (529)
T d1jdha_ 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHh
Confidence 7544444455789999999999999999999999999998654422 2234789999999999999999999999999
Q ss_pred hhcCChHHHHHHHhCCChHHHHHHhcC-CCchhHHHHHHHHHHHHhcCC---HHHHHHHHHcCCHHHHHHHhccCC-HHH
Q 015687 310 IVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGN---VNQIQAIIEAGIIGPLVNLLLNAE-FEI 384 (402)
Q Consensus 310 l~~~~~~~~~~i~~~~~l~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~---~~~~~~l~~~~~i~~L~~ll~~~~-~~v 384 (402)
++.+++.....+.+.++++.++..+.. +..+.++..++++|.|++... ......+...|+++.|+.++..++ ..+
T Consensus 293 l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~ 372 (529)
T d1jdha_ 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred hccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHH
Confidence 999998888888999999999998843 226788999999999999742 223445567899999999998754 578
Q ss_pred HHHHHHHHHHhhcCC
Q 015687 385 KKEAAWAISNATSGG 399 (402)
Q Consensus 385 ~~~a~~aL~nl~~~~ 399 (402)
+..+++++.|++.+.
T Consensus 373 ~~~~~~~l~~l~~~~ 387 (529)
T d1jdha_ 373 IKATVGLIRNLALCP 387 (529)
T ss_dssp HHHHHHHHHHHTTSG
T ss_pred HHHHHHHHhhcchhh
Confidence 899999999998653
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.8e-25 Score=206.48 Aligned_cols=322 Identities=19% Similarity=0.210 Sum_probs=246.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.||.+++.|++++++++..|+.+|.++... +++....+.+.|++|.|+++|++++ ++++..|+++|.+++.++++.+.
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~ 80 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ-DESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSS-CSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHH
Confidence 589999999999999999999999999654 3677888999999999999999888 99999999999999988889999
Q ss_pred HHHhCCchHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhc---------------cchhhH
Q 015687 152 VVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---------------EHAKLS 215 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~---------------~~~~~~ 215 (402)
.+.+.|+++.|+.++.+ .+++++..++++|++++.+... +...... +++.++..+. ...+..
T Consensus 81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (457)
T d1xm9a1 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHHH-HHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccHH
Confidence 99999999999998864 7889999999999999987653 3444333 3334433321 223456
Q ss_pred HHHHHHHHHHHhhhCCCCCchh----------------------------------------------------------
Q 015687 216 MLRNATWTLSNFCRGKPQPLFE---------------------------------------------------------- 237 (402)
Q Consensus 216 ~~~~a~~~L~~l~~~~~~~~~~---------------------------------------------------------- 237 (402)
++..+++++.+++.........
T Consensus 159 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (457)
T d1xm9a1 159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhh
Confidence 6666666666555432100000
Q ss_pred -----------------------------------------hhhchHHHHHHhcc-CCChhHHHHHHHHHHHhccCChH-
Q 015687 238 -----------------------------------------QTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTND- 274 (402)
Q Consensus 238 -----------------------------------------~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~~l~~~~~~- 274 (402)
...++++.++.++. ..++.+...+++++.+++.....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~ 318 (457)
T d1xm9a1 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccc
Confidence 00122333444432 23566677788888888754332
Q ss_pred ----HHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-----CchhHHHH
Q 015687 275 ----KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-----YKKSIKKE 345 (402)
Q Consensus 275 ----~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~-----~~~~v~~~ 345 (402)
....+.+.|+++.|+.++.++++.++..+++++++++.... ....+ ..++++.++.+|... .+++++..
T Consensus 319 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~-~~~~i-~~~~i~~li~~L~~~~~~~~~~~~v~~~ 396 (457)
T d1xm9a1 319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL-LHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG-GHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred hHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh-HHHHH-HHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence 12334556899999999999999999999999999987543 44434 447899999998643 14579999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhcCC
Q 015687 346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGG 399 (402)
Q Consensus 346 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~ 399 (402)
++++|.|++.++++..+.+.+.|+++.|+.++.+ +++.+++.|+.+|+|++.+.
T Consensus 397 a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~ 451 (457)
T d1xm9a1 397 ACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCH
Confidence 9999999999889999999999999999999976 46789999999999997653
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.8e-23 Score=195.06 Aligned_cols=281 Identities=17% Similarity=0.218 Sum_probs=217.3
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhH
Q 015687 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (402)
Q Consensus 114 g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (402)
+.||.|+++|++++ ++++..|+++|++++.++++++..+.+.|+||.|+++|++++++++..|+++|+||+.+++..+.
T Consensus 2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~ 80 (457)
T d1xm9a1 2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 46899999999999 99999999999999999899999999999999999999999999999999999999999888999
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhc----------------cCCChhH
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----------------HSNDDEV 257 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL----------------~~~~~~v 257 (402)
.+.+.|+++.++.++....+..++..+++++.+++...... .......++.++..+ ...+..+
T Consensus 81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 159 (457)
T d1xm9a1 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK-EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH-HHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhH-HHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence 99999999999999977788999999999999999875332 333334444443332 3356888
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC--------------------------------------------
Q 015687 258 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-------------------------------------------- 293 (402)
Q Consensus 258 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~-------------------------------------------- 293 (402)
+..+++++.+++...+.........|+++.++.++.
T Consensus 160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 239 (457)
T d1xm9a1 160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence 999999998887655544333333344444443321
Q ss_pred -------------------------------------------------------CCChhhHHHHHHHHHHhhcCChH--
Q 015687 294 -------------------------------------------------------HPSPSVLIPALRTVGNIVTGDDM-- 316 (402)
Q Consensus 294 -------------------------------------------------------~~~~~v~~~a~~~l~nl~~~~~~-- 316 (402)
..++.++..+.+++.+++.....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 319 (457)
T d1xm9a1 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence 11233445666667776654331
Q ss_pred ---HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc------CCHHHHHH
Q 015687 317 ---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN------AEFEIKKE 387 (402)
Q Consensus 317 ---~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~ 387 (402)
....+.+.|+++.|+.++.++ ++.++..++++++|++.. ++.... +..++++.|+.+|.. .+.+++..
T Consensus 320 ~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~-~~~~~~-i~~~~i~~li~~L~~~~~~~~~~~~v~~~ 396 (457)
T d1xm9a1 320 SGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PLLHRV-MGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GGGHHH-HHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhC-hhHHHH-HHHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence 223344679999999999998 999999999999999875 333344 445689999999864 23579999
Q ss_pred HHHHHHHhhcCC
Q 015687 388 AAWAISNATSGG 399 (402)
Q Consensus 388 a~~aL~nl~~~~ 399 (402)
|+.+|.|++.+.
T Consensus 397 a~~~L~~l~~~~ 408 (457)
T d1xm9a1 397 ACYTVRNLMASQ 408 (457)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhcCC
Confidence 999999998654
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=9.6e-22 Score=170.95 Aligned_cols=195 Identities=17% Similarity=0.183 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHH
Q 015687 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 207 (402)
Q Consensus 129 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~ 207 (402)
.+.+..|+.+|.+++.+ .++...+...|+++.++. ++++++++++..|+++|++++.+++..+..+.+.|+++.|+.+
T Consensus 31 ~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l 109 (264)
T d1xqra1 31 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 109 (264)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 67899999999999974 778888999999999886 7889999999999999999999999899999999999999999
Q ss_pred hccchhhHHHHHHHHHHHHhhhCCCCCc-hhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 015687 208 FNEHAKLSMLRNATWTLSNFCRGKPQPL-FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 286 (402)
Q Consensus 208 l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 286 (402)
+....++.++..+++++++++.+.+... .....++++.|++++.++++.++..++++|.+++..+++....+.+.|+++
T Consensus 110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~ 189 (264)
T d1xqra1 110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 189 (264)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence 9767788999999999999998874333 344578999999999999999999999999999988887888899999999
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC
Q 015687 287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 324 (402)
Q Consensus 287 ~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~ 324 (402)
.|+.+|.++++.++..|+++|++++..++.....+...
T Consensus 190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~ 227 (264)
T d1xqra1 190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP 227 (264)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 99999999999999999999999999888777666543
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=3.1e-20 Score=161.23 Aligned_cols=198 Identities=12% Similarity=0.122 Sum_probs=175.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCch-hhhhchHHHH
Q 015687 168 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF-EQTRPALPAL 246 (402)
Q Consensus 168 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L 246 (402)
+.+.+.+..|+.+|.+++.+.+ .+..+...|++++++..+..+++++++..++++|.+++.+.+.... ....+++|.|
T Consensus 28 ~~~~~~~~~Al~~L~~L~~~~d-~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 28 AADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 3467889999999999996544 6778889999999998665888999999999999999988654333 3347899999
Q ss_pred HHhcc-CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCC
Q 015687 247 ERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ 325 (402)
Q Consensus 247 ~~lL~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~ 325 (402)
+.++. ..++.++..+++++++++.+.+.....+...|+++.|+.++.+++..++..++++|++++.+++.....+.+.|
T Consensus 107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 186 (264)
T d1xqra1 107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 186 (264)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence 99996 46789999999999999999888888899999999999999999999999999999999998888899999999
Q ss_pred ChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 015687 326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 367 (402)
Q Consensus 326 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 367 (402)
++|.|+.++.++ ++.++..|+|+|.+|+.+++.........
T Consensus 187 ~v~~L~~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~~~~~~ 227 (264)
T d1xqra1 187 MVQQLVALVRTE-HSPFHEHVLGALCSLVTDFPQGVRECREP 227 (264)
T ss_dssp HHHHHHHHHTSC-CSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred hHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 999999999998 99999999999999999888888777653
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=4.2e-14 Score=136.30 Aligned_cols=305 Identities=13% Similarity=0.101 Sum_probs=223.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.++.+...+++++++++..|+..+..++..-.........-..+++.+...+.+.+ +.++..++.++..++..-. ..
T Consensus 282 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~-~~vr~~~~~~l~~~~~~~~--~~ 358 (588)
T d1b3ua_ 282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILG--KD 358 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHC--HH
T ss_pred hhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCC-hHHHHHHHHHHhhhhhccc--hh
Confidence 35677778888888888888888888765432222233334557888889988887 8999999888877764211 11
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
... ...+|.+..++.+++++++..++.+++.+...... ..+ ....++.+...+ .+.+..++..++.++..++...
T Consensus 359 ~~~-~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~~~-~~~ll~~l~~~~-~d~~~~~r~~~~~~l~~l~~~~ 433 (588)
T d1b3ua_ 359 NTI-EHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQL-SQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQL 433 (588)
T ss_dssp HHH-HHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HHH-HHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--hhh-hhHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHc
Confidence 122 24789999999999999999999888877643211 111 123566777777 6778889999999999888653
Q ss_pred CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 015687 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~ 311 (402)
.. ......+.+.+..++.++...++..++++++.++...... .....+++.+..++.++++..|..++.+++.+.
T Consensus 434 ~~--~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~---~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~ 508 (588)
T d1b3ua_ 434 GV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS 508 (588)
T ss_dssp CG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred Ch--HhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 21 1222456778888999999999999999999987532111 123457889999999999999999999999987
Q ss_pred cCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 015687 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 390 (402)
Q Consensus 312 ~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 390 (402)
...+. ......++|.+.+++.++ .+.||..++++|..+... .+.. +...+.|.|..+++++|.+||..|..
T Consensus 509 ~~~~~---~~~~~~ilp~ll~~~~D~-v~nVR~~a~~~l~~i~~~~~~~~----~~~~i~~~l~~L~~D~d~dVr~~A~~ 580 (588)
T d1b3ua_ 509 EVCGQ---DITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPILDNST----LQSEVKPILEKLTQDQDVDVKYFAQE 580 (588)
T ss_dssp HHHHH---HHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSCHHH----HHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHcCh---HHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHcCcHh----HHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 64332 233446899999999988 999999999999999863 3332 22335678888888999999999999
Q ss_pred HHHHhhc
Q 015687 391 AISNATS 397 (402)
Q Consensus 391 aL~nl~~ 397 (402)
|+..|+-
T Consensus 581 al~~l~~ 587 (588)
T d1b3ua_ 581 ALTVLSL 587 (588)
T ss_dssp HHHHTTC
T ss_pred HHHHHhc
Confidence 9998874
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.4e-13 Score=132.55 Aligned_cols=304 Identities=12% Similarity=0.099 Sum_probs=221.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCC-cchH
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS-ENTR 151 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~-~~~~ 151 (402)
+|.+.+.++..++.++..++..|..+...- ........+++.+..++.+++ ++++..|+..++.++..-. ....
T Consensus 244 ~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~----~~~~~~~~l~~~l~~ll~d~~-~~vr~~a~~~l~~~~~~l~~~~~~ 318 (588)
T d1b3ua_ 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAV----GPEITKTDLVPAFQNLMKDCE-AEVRAAASHKVKEFCENLSADCRE 318 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHH----CHHHHHHTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred HHHHHHhcccccHHHHHHHHHhHHHHHHHh----hhhhhhhhhhHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhh
Confidence 456666666677777777777777765321 112233457889999999888 8999999999998876432 2223
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
...-..+++.+...+.+.+..++..++.++..++..-. ........++.+...+ .+.+++++..+...+..+....
T Consensus 319 ~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~---~~~~~~~l~p~l~~~l-~d~~~~v~~~~~~~l~~~~~~~ 394 (588)
T d1b3ua_ 319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG---KDNTIEHLLPLFLAQL-KDECPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC---HHHHHHHTHHHHHHHH-TCSCHHHHHHHHTTCHHHHHHS
T ss_pred hhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccc---hhHHHHHHHHHHHHHH-HhhhhhhhhHHHHHHHHHHhhc
Confidence 33334688999999999999999999998888763211 1111223677888888 6778889999988888777642
Q ss_pred CCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 015687 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (402)
Q Consensus 232 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~ 311 (402)
........++|.+..++.+.++.++..++.++..++..-... .....+.+.+..++.++...+|..|+.+++.++
T Consensus 395 --~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~ 469 (588)
T d1b3ua_ 395 --GIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLV 469 (588)
T ss_dssp --CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred --chhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChH---hHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Confidence 122334678889999999999999999999998886421100 111234567788888999999999999999998
Q ss_pred cCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHH
Q 015687 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 391 (402)
Q Consensus 312 ~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 391 (402)
..... ......++|.+..++.++ +..+|..++++++.+....+. ......++|.|..++.++.+.||..|+++
T Consensus 470 ~~~~~---~~~~~~i~~~l~~~~~~~-~~~~R~~~~~~l~~l~~~~~~---~~~~~~ilp~ll~~~~D~v~nVR~~a~~~ 542 (588)
T d1b3ua_ 470 EKFGK---EWAHATIIPKVLAMSGDP-NYLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLRMAGDPVANVRFNVAKS 542 (588)
T ss_dssp HHHCH---HHHHHHTHHHHHHTTTCS-CHHHHHHHHHHHHHHHHHHHH---HHHHHHTHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHhCc---HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCh---HHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 63211 112335788999999888 899999999999988763222 22344589999999999999999999999
Q ss_pred HHHhhc
Q 015687 392 ISNATS 397 (402)
Q Consensus 392 L~nl~~ 397 (402)
|..+..
T Consensus 543 l~~i~~ 548 (588)
T d1b3ua_ 543 LQKIGP 548 (588)
T ss_dssp HHHHGG
T ss_pred HHHHHH
Confidence 999864
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=1.5e-11 Score=106.04 Aligned_cols=253 Identities=15% Similarity=0.139 Sum_probs=190.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
..+.|++.|+++++.++..|+..|..+-+ ...++.|++++++++ +.++..|+.+|+.+..... ...
T Consensus 20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~------------~~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~~-~~~ 85 (276)
T d1oyza_ 20 NDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK-CED 85 (276)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-THH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHhhCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-ccc
Confidence 46789999999999999999999988731 125899999999988 9999999999999875322 111
Q ss_pred HHHhCCchHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhC
Q 015687 152 VVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (402)
Q Consensus 152 ~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (402)
. .++.+.. +++++++.++..++.+|++++...+.... ..++.+...+ .+.++.++..++.++.....
T Consensus 86 ~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~- 153 (276)
T d1oyza_ 86 N-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND- 153 (276)
T ss_dssp H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC---
T ss_pred c-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHh-cCcchHHHHHHHHHHhhcch-
Confidence 1 2333443 56789999999999999999865543222 2455666666 66778888888888776542
Q ss_pred CCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 015687 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (402)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl 310 (402)
...++.+..++...+..+...+..++..+...... ..+.+...+.+.+..++..+..+++.+
T Consensus 154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~~ 215 (276)
T d1oyza_ 154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYR 215 (276)
T ss_dssp ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccchh
Confidence 24567888888889999999998888887655543 235577778889999999999998876
Q ss_pred hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHH
Q 015687 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAA 389 (402)
Q Consensus 311 ~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~ 389 (402)
.. ...+|.|+..+.++ .+|..++++|+.+. ++ +.++.|..++.+ ++.+++..|+
T Consensus 216 ~~-----------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig--~~---------~~~~~L~~~l~~~~d~~vr~~A~ 270 (276)
T d1oyza_ 216 KD-----------KRVLSVLCDELKKN---TVYDDIIEAAGELG--DK---------TLLPVLDTMLYKFDDNEIITSAI 270 (276)
T ss_dssp TC-----------GGGHHHHHHHHTSS---SCCHHHHHHHHHHC--CG---------GGHHHHHHHHTTSSCCHHHHHHH
T ss_pred hh-----------hhhHHHHHHHhCCh---HHHHHHHHHHHHcC--CH---------HHHHHHHHHHccCCCHHHHHHHH
Confidence 42 24678888888644 58999999999884 22 378888888876 5788999999
Q ss_pred HHHH
Q 015687 390 WAIS 393 (402)
Q Consensus 390 ~aL~ 393 (402)
.+|.
T Consensus 271 ~~L~ 274 (276)
T d1oyza_ 271 DKLK 274 (276)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8874
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=3e-13 Score=136.64 Aligned_cols=276 Identities=17% Similarity=0.181 Sum_probs=174.8
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hhhH
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRD 193 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~ 193 (402)
+++.+.+.+.+++ ...|..|+.+|+.++.+..+.....+. .+++.|+..++++++.+|..++|+|+.++.... ...+
T Consensus 396 ~l~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~ 473 (888)
T d1qbkb_ 396 ILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD 473 (888)
T ss_dssp HHHHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHH
T ss_pred HHHHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3555666777777 799999999999999865433222222 468889999999999999999999999874221 1111
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHH-------------
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTD------------- 260 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~------------- 260 (402)
. .-...++.++..+ .+.++.++..++++|.+++.............+++.++..+...+......
T Consensus 474 ~-~~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~ 551 (888)
T d1qbkb_ 474 T-YLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVG 551 (888)
T ss_dssp H-HTTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHG
T ss_pred h-hhhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhh
Confidence 2 2234677788777 667789999999999999876432222222333333333332221111111
Q ss_pred --------------------------------HHHHHHHhcc----C---------------------------------
Q 015687 261 --------------------------------ACWALSYLSD----G--------------------------------- 271 (402)
Q Consensus 261 --------------------------------a~~~l~~l~~----~--------------------------------- 271 (402)
.+.+++.++. .
T Consensus 552 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 631 (888)
T d1qbkb_ 552 HHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY 631 (888)
T ss_dssp GGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred ccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 1111111100 0
Q ss_pred ---ChHHH-------------------HHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHH
Q 015687 272 ---TNDKI-------------------QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPC 329 (402)
Q Consensus 272 ---~~~~~-------------------~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~ 329 (402)
..+.. ..+....+++.+...+.+.++.++..|+.++|.++..........++ .+++.
T Consensus 632 ~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~~ 710 (888)
T d1qbkb_ 632 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPI 710 (888)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHH
Confidence 00000 00011123444555566778888999999999888655443332222 46777
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCC--HHHHHHHHHHHHHhhc
Q 015687 330 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE--FEIKKEAAWAISNATS 397 (402)
Q Consensus 330 L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~a~~aL~nl~~ 397 (402)
+...+.++ .+.++..|+|+++.|+....+.....++. +++.|+.++++++ ..++.+++.+|+.++.
T Consensus 711 l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~py~~~-il~~L~~il~~~~~~~~v~~n~~~~lgrl~~ 778 (888)
T d1qbkb_ 711 LGTNLNPE-FISVCNNATWAIGEISIQMGIEMQPYIPM-VLHQLVEIINRPNTPKTLLENTAITIGRLGY 778 (888)
T ss_dssp HHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGGGGSHH-HHHHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHcCCCccHHHHHHHHHHHHHHHH
Confidence 88888877 88999999999999987444444544443 7889999998754 4589999999998764
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=7.5e-12 Score=126.29 Aligned_cols=318 Identities=15% Similarity=0.164 Sum_probs=198.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCC-cchHH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS-ENTRV 152 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~ 152 (402)
+.+.+.+.++++..+..|+.++..++.+. .......+ ..+++.++..+++++ +.+|..|+|+|+.++.... .....
T Consensus 398 ~~l~~~l~s~~~~~reaa~~alg~i~eg~-~~~~~~~l-~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~~~ 474 (888)
T d1qbkb_ 398 PLLKELLFHHEWVVKESGILVLGAIAEGC-MQGMIPYL-PELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPDT 474 (888)
T ss_dssp HHHHHTTTSSSHHHHHHHHHHHHHHTTTS-HHHHTTTH-HHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCHHH
T ss_pred HHHHHhhccchhHHHHHHHHHhhhhhhhH-HHHhcccc-hhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 45556777889999999999999886432 11111111 235788899998888 9999999999999875321 22222
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hhh---HHH--------------------------Hh-----
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCR---DLV--------------------------LS----- 197 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~---~~~--------------------------~~----- 197 (402)
.. ..+++.++..+.++++.+++.|+++|.+++.... ... ..+ .+
T Consensus 475 ~~-~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~ 553 (888)
T d1qbkb_ 475 YL-KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHH 553 (888)
T ss_dssp HT-TTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred hh-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhcc
Confidence 22 3688899999999999999999999999873211 000 000 00
Q ss_pred ---cCChHHHHHHh----cc--chh-------------------------------------------------------
Q 015687 198 ---NGALMPLLAQF----NE--HAK------------------------------------------------------- 213 (402)
Q Consensus 198 ---~g~i~~L~~~l----~~--~~~------------------------------------------------------- 213 (402)
...++.++..+ .. ..+
T Consensus 554 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 633 (888)
T d1qbkb_ 554 LNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEA 633 (888)
T ss_dssp GCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCC
T ss_pred ccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 00011111110 00 000
Q ss_pred --hHHHHHHHHHHHHhhhCCCCCchhhh--hchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 015687 214 --LSMLRNATWTLSNFCRGKPQPLFEQT--RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 289 (402)
Q Consensus 214 --~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~ 289 (402)
.++...++.++..+...-........ ..+++.+...+.+.+++++..++.+++.++..........++ .+++.+.
T Consensus 634 ~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~ 712 (888)
T d1qbkb_ 634 PDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILG 712 (888)
T ss_dssp CCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHH
Confidence 00011111111111111100000011 235566677778888999999999998887544433222222 3567788
Q ss_pred HhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 015687 290 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAIIEAG 368 (402)
Q Consensus 290 ~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 368 (402)
..|.++...++..|++++|.++..........+. .+++.|+.+++++. ...++.+++-+|+.|+...|+.+...++.
T Consensus 713 ~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~- 790 (888)
T d1qbkb_ 713 TNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQ- 790 (888)
T ss_dssp HTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGG-
T ss_pred HHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHH-
Confidence 8888888899999999999998754433222222 57788999998752 34589999999999998778866555544
Q ss_pred CHHHHHHHhcc-CCHHHHHHHHHHHHHhhcC
Q 015687 369 IIGPLVNLLLN-AEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 369 ~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~ 398 (402)
+++.++..|.. .|.+-+..|...++.+...
T Consensus 791 ~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~ 821 (888)
T d1qbkb_ 791 FIRPWCTSLRNIRDNEEKDSAFRGICTMISV 821 (888)
T ss_dssp THHHHHHHHTTSCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHHHHH
Confidence 78888888866 4556678888888887753
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.1e-11 Score=128.95 Aligned_cols=272 Identities=14% Similarity=0.149 Sum_probs=195.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 151 (402)
.+..+++.+++.|++.++.|+..|.+.+..+ ....+.-....+++.|+++|++++ +++|..|+.+|+.++..-++.
T Consensus 4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~-~~~~~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~-- 79 (1207)
T d1u6gc_ 4 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY-- 79 (1207)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhc-ccccChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHh--
Confidence 3678899999999999999999999987654 222222223347899999999888 999999999999998764432
Q ss_pred HHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch------hhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHH
Q 015687 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK------CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 225 (402)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~------~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~ 225 (402)
.+. .+++.|+..+.+++...+..+..+|..+...-+. .... .....++.+...+....+..++..++.++.
T Consensus 80 -~~~-~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~v~~~al~~l~ 156 (1207)
T d1u6gc_ 80 -QVE-TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA 156 (1207)
T ss_dssp -HHH-HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred -hHH-HHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 121 4688888888888888999988888877532211 1111 111244555555555667888999999999
Q ss_pred HhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCChhhHHHHH
Q 015687 226 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPAL 304 (402)
Q Consensus 226 ~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L-~~~~~~v~~~a~ 304 (402)
.+....+..-......+++.++..+.++++.++..|+.+++.++....+.. -..+++.++..+ .+.+...+..++
T Consensus 157 ~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~----~~~~~~~ll~~l~~~~~~~~~~~~~ 232 (1207)
T d1u6gc_ 157 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTYI 232 (1207)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHccCCCHHHHHHHH
Confidence 998876544444556788899999999999999999999999986544221 123456666655 355566777888
Q ss_pred HHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 015687 305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (402)
Q Consensus 305 ~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 356 (402)
.+++.++...+...... -..++|.+...+.+. ++.+|..++.++..++..
T Consensus 233 ~~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~ 282 (1207)
T d1u6gc_ 233 QCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRR 282 (1207)
T ss_dssp HHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcchhhHHH-HHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHh
Confidence 89998886544322111 136789999999988 899999999999988764
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=5.9e-11 Score=102.17 Aligned_cols=229 Identities=14% Similarity=0.144 Sum_probs=177.1
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh
Q 015687 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (402)
Q Consensus 113 ~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (402)
....+.|+++|++++ +.++..|+.+|+.+.. + .+++.|+.+++++++.++..|+.+|+.+...... .
T Consensus 18 ~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~ 84 (276)
T d1oyza_ 18 KLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-E 84 (276)
T ss_dssp TSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-H
T ss_pred cCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-c
Confidence 445778999999988 9999999999998753 1 4689999999999999999999999998644332 1
Q ss_pred HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCC
Q 015687 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (402)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~ 272 (402)
+. .++.+...+..++++.++..++.+|..++...+ ......++.+...+.+.++.++..++.+++.+..
T Consensus 85 ~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~-- 153 (276)
T d1oyza_ 85 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-- 153 (276)
T ss_dssp HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--
Confidence 22 244566666578899999999999999987642 2224567888888889999999999888876542
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 015687 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352 (402)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n 352 (402)
...++.+..++.+.++.++..+..+++.+...... ..+.+...+.+. +..++..+.++++.
T Consensus 154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~al~~ 214 (276)
T d1oyza_ 154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK-NEEVRIEAIIGLSY 214 (276)
T ss_dssp ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhh-hhhhhhhhccccch
Confidence 24567788888889999999999999888776553 344567777777 88999999999987
Q ss_pred HhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 353 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 353 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
+.. ..+++.|+..+.+ ++++..|+++|+.+..
T Consensus 215 ~~~-----------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~ 246 (276)
T d1oyza_ 215 RKD-----------KRVLSVLCDELKK--NTVYDDIIEAAGELGD 246 (276)
T ss_dssp TTC-----------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCC
T ss_pred hhh-----------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCC
Confidence 642 2367888888874 4588999999998754
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=2.9e-10 Score=104.76 Aligned_cols=275 Identities=17% Similarity=0.199 Sum_probs=178.1
Q ss_pred cHHHHHHhhcC--CCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhcCCCc
Q 015687 72 SLPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSE 148 (402)
Q Consensus 72 ~i~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~l~~~~~~ 148 (402)
.++.+++.+.+ .++..+..++.++..+.... .+....-....+++.++..+.+++ ...++..|+.++..+......
T Consensus 128 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~ 206 (458)
T d1ibrb_ 128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 206 (458)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred hhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhc-cchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence 46778888876 34566667777777775432 122111222335788888887543 368999999999998864332
Q ss_pred ch-HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 149 NT-RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 149 ~~-~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
.. .........+.+..++.+++++++..++.+|..++...+..-...+.. .+..++.....+.+..++..++.++..+
T Consensus 207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~i 285 (458)
T d1ibrb_ 207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP-ALFAITIEAMKSDIDEVALQGIEFWSNV 285 (458)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTT-THHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 21 112222456778888899999999999999999986554321111111 2333333333566778888888888877
Q ss_pred hhCCC-----------------CCc----hhhhhchHHHHHHhccC-------CChhHHHHHHHHHHHhccCCh-HHHHH
Q 015687 228 CRGKP-----------------QPL----FEQTRPALPALERLIHS-------NDDEVLTDACWALSYLSDGTN-DKIQA 278 (402)
Q Consensus 228 ~~~~~-----------------~~~----~~~~~~~l~~L~~lL~~-------~~~~v~~~a~~~l~~l~~~~~-~~~~~ 278 (402)
+.... ... ......+.|.+...+.+ ++..++..+..++..++.... ....
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~- 364 (458)
T d1ibrb_ 286 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP- 364 (458)
T ss_dssp HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-
T ss_pred HHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhh-
Confidence 64210 000 01123445555555532 234578888888888774332 2222
Q ss_pred HHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 279 ~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
.+++.+...+.++++.+|..|+.+|+.++.+.. ..... .-..++|.++..++++ ++.||..|+|+|+.++.
T Consensus 365 ----~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d~-~~~VR~~a~~~l~~i~~ 436 (458)
T d1ibrb_ 365 ----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICE 436 (458)
T ss_dssp ----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 356778888899999999999999999997542 22111 2236889999999998 99999999999999975
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=2.6e-10 Score=105.11 Aligned_cols=278 Identities=13% Similarity=0.090 Sum_probs=181.8
Q ss_pred CcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCch
Q 015687 114 GVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPK 190 (402)
Q Consensus 114 g~i~~L~~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~ 190 (402)
++++.+++.+.++. +...+..++.++..++.........-.-..+++.+...+.+ .+.+++..++.+++++....+.
T Consensus 127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~ 206 (458)
T d1ibrb_ 127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 206 (458)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence 56888888886533 35677888899988875433222111122467788887764 5688999999999999865432
Q ss_pred hhH-HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhh-hchHHHHHHhccCCChhHHHHHHHHHHHh
Q 015687 191 CRD-LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYL 268 (402)
Q Consensus 191 ~~~-~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~~l~~l 268 (402)
... ........+.+...+ .+++++++..++.++..++...+..-...+ ....+.+...+.+.+++++..++..+..+
T Consensus 207 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i 285 (458)
T d1ibrb_ 207 NFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 285 (458)
T ss_dssp HHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhHhhHHHHh-cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 211 111112344444455 677899999999999999887543222222 23344556667788889999998888877
Q ss_pred ccCChHHH--------------------HHHHHhCcHHHHHHhcC-------CCChhhHHHHHHHHHHhhcCChHHHHHH
Q 015687 269 SDGTNDKI--------------------QAVIEAGVCPRLVELLR-------HPSPSVLIPALRTVGNIVTGDDMQTQCI 321 (402)
Q Consensus 269 ~~~~~~~~--------------------~~~~~~~~i~~L~~~L~-------~~~~~v~~~a~~~l~nl~~~~~~~~~~i 321 (402)
+....... .......+++.+...+. +.+..++..+..+++.++.......
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~--- 362 (458)
T d1ibrb_ 286 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI--- 362 (458)
T ss_dssp HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH---
T ss_pred HHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh---
Confidence 63211110 00111123444555443 2234678888888888876433221
Q ss_pred HhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 322 INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 322 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
+. .+++.+...++++ ++.+|..|+.+|+.++.+. ++.+...+ ..+++.++..++++++.||..|+|+|+.++..
T Consensus 363 ~~-~l~~~i~~~l~s~-~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~ 437 (458)
T d1ibrb_ 363 VP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 437 (458)
T ss_dssp HH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred hh-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCHhHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 11 3567788888888 8999999999999998653 23222222 34789999999999999999999999998753
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=2.8e-09 Score=110.52 Aligned_cols=317 Identities=11% Similarity=0.154 Sum_probs=204.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCC----CCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCc
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIER----SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~----~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 148 (402)
++.++..+.+++...+..+..+|+.++..-. .......+-..+++.+...+....+..++..++.+|..+....+.
T Consensus 85 ~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~ 164 (1207)
T d1u6gc_ 85 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 164 (1207)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhH
Confidence 3444555555555556556666655543210 011111222234556666666655588999999999988763332
Q ss_pred chHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhh
Q 015687 149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~ 228 (402)
...... ..+++.|+..+.+++..+|..|+.+|+.++...+. .. -...++.++..+..+.+...++.++.++..++
T Consensus 165 ~l~~~~-~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~---~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~ 239 (1207)
T d1u6gc_ 165 LLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAIS 239 (1207)
T ss_dssp SCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred hhHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH---HH-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 211111 13678888889999999999999999999876542 11 12357777777756666677788888999998
Q ss_pred hCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh-----------------
Q 015687 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL----------------- 291 (402)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~----------------- 291 (402)
+..+..-......++|.+...+.+++++++..++.++..++...+....... ..+++.+...
T Consensus 240 ~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~ii~~~l~~l~~dp~~~~~~~~~~~~ 318 (1207)
T d1u6gc_ 240 RQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDEN 318 (1207)
T ss_dssp HHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-------------
T ss_pred HHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhH-HHHHHHHHHHHhcCcchhhhhHHHHHh
Confidence 8765444455678899999999999999999999988887644321111000 0111111111
Q ss_pred --------------------cCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 015687 292 --------------------LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (402)
Q Consensus 292 --------------------L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 351 (402)
..+..+.++..++.+++.++...++...... ..++|.++..+.+. ++.+|..+..++.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~-~~~~~~L~~~l~d~-~~~vr~~~~~~l~ 396 (1207)
T d1u6gc_ 319 AMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHAYL 396 (1207)
T ss_dssp -----------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHHH
T ss_pred hhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhcCC-chHHHHHHHHHHH
Confidence 1234567899999999999887665554443 36889999999888 8899999999888
Q ss_pred HHhcC---CHH-------------HHHHHHH--cCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 352 NITAG---NVN-------------QIQAIIE--AGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 352 nl~~~---~~~-------------~~~~l~~--~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
.+... ... ....+.+ ..+++.+...+.+.+.+++..+..++..++.
T Consensus 397 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~ 460 (1207)
T d1u6gc_ 397 SLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVN 460 (1207)
T ss_dssp HHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 77631 000 0011111 2356777888888999999999999988764
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.02 E-value=2.5e-08 Score=98.95 Aligned_cols=314 Identities=14% Similarity=0.114 Sum_probs=199.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 153 (402)
..+++.+.++++.++..++.++..++..+ .+...+ ..+++.|++.+.+++...++..|+.+|..++.........+
T Consensus 98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~--~p~~~w--peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~ 173 (861)
T d2bpta1 98 TNALTALVSIEPRIANAAAQLIAAIADIE--LPHGAW--PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQAL 173 (861)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHH--GGGTCC--HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHh--CCcCch--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45677888889999999999998886543 111111 12678888888877656788889999999986533322222
Q ss_pred Hh--CCchHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhhH-HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhh
Q 015687 154 ID--HGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRD-LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 154 ~~--~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~-~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~ 228 (402)
.. ..+++.++..+. ..+..++..++.+++++....+..-. .......++.+...+ ++++++++..++.++..++
T Consensus 174 ~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~i~ 252 (861)
T d2bpta1 174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT-QAEDIEVQAAAFGCLCKIM 252 (861)
T ss_dssp GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHH-TCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHh-cCCCHHHHHHHHHHHHHHH
Confidence 21 123444444443 46789999999999998765432111 111112445555666 6788899999999999998
Q ss_pred hCCCCCchhhhhchHHH-HHHhccCCChhHHHHHHHHHHHhccCChHHHHHHH----------------HhCcHHHHHHh
Q 015687 229 RGKPQPLFEQTRPALPA-LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI----------------EAGVCPRLVEL 291 (402)
Q Consensus 229 ~~~~~~~~~~~~~~l~~-L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~----------------~~~~i~~L~~~ 291 (402)
...+..-.......+.. +.....+.++.++..++..+..++........... -..+++.+...
T Consensus 253 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~ 332 (861)
T d2bpta1 253 SKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNL 332 (861)
T ss_dssp HHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77543333333333433 34555677889999888888777643221111111 11234555555
Q ss_pred cCC-------CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHH
Q 015687 292 LRH-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQA 363 (402)
Q Consensus 292 L~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~ 363 (402)
+.. .+...+..+..++..++...+...- . -..+.+...+.+. +...+..++.+++.++.+ .......
T Consensus 333 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~-~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~ 407 (861)
T d2bpta1 333 LTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL---E-PVLEFVEQNITAD-NWRNREAAVMAFGSIMDGPDKVQRTY 407 (861)
T ss_dssp TTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH---H-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHH
T ss_pred HHHhhccccchhHHHHHHHHHHHHHHHhhcchhhh---h-hhcchhhhhhhhH-HHHHHHHHHHHHHHHHhhcchhhHHH
Confidence 532 2345677777777776653322111 0 1234455556666 888999999999999975 3444444
Q ss_pred HHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 364 IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 364 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
.++. +++.++..+.+.++.+|..|+|+++.++..
T Consensus 408 ~l~~-~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T d2bpta1 408 YVHQ-ALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HHHH-HHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHhcCcchhhhhHHHHHHHHHHHH
Confidence 4443 789999999999999999999999988753
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.9e-08 Score=100.24 Aligned_cols=318 Identities=17% Similarity=0.204 Sum_probs=196.4
Q ss_pred cHHHHHHhhcCCC--HHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhcCCCc
Q 015687 72 SLPAMVAGVWSDD--RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSE 148 (402)
Q Consensus 72 ~i~~l~~~l~s~~--~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~l~~~~~~ 148 (402)
-++.+++.+.+++ +..+..++.+|..+...-...... -.-..+++.+++.+.+++ +..++..|+.++.+.......
T Consensus 129 li~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~-~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~ 207 (876)
T d1qgra_ 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ-DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHG-GGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhh
Confidence 4678888887654 567777888888875422111111 112346788888886543 368899999999887653221
Q ss_pred ch-HHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHh
Q 015687 149 NT-RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 149 ~~-~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l 227 (402)
.. ......-+++.+...+.+++++++..++.+|..++...+..-...+.....+.+...+ .+.+.++...++..+..+
T Consensus 208 ~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~i 286 (876)
T d1qgra_ 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHH
Confidence 11 1111122567777788889999999999999999876554323323332333344444 555667777777766666
Q ss_pred hhCC----------------C-CCch----hhhhchHHHHHHhccCC-------ChhHHHHHHHHHHHhccCChHHHHHH
Q 015687 228 CRGK----------------P-QPLF----EQTRPALPALERLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAV 279 (402)
Q Consensus 228 ~~~~----------------~-~~~~----~~~~~~l~~L~~lL~~~-------~~~v~~~a~~~l~~l~~~~~~~~~~~ 279 (402)
+... + .... .....++|.+...+... +..++..+..++..++....+. +
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~ 363 (876)
T d1qgra_ 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I 363 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---G
T ss_pred HHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh---h
Confidence 5421 0 0011 11234455555554321 2346777777777766432221 1
Q ss_pred HHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015687 280 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359 (402)
Q Consensus 280 ~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 359 (402)
+ ..+++.+...+.++++..+..++.+++.+..+.......-.-..+++.+...+.++ ++.++..++|+++.++...+.
T Consensus 364 ~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T d1qgra_ 364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGG
T ss_pred h-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCC-ccHHHHHHHHHHHHHHHHcch
Confidence 1 12345666777888999999999999999876543322233336788999999988 999999999999999863222
Q ss_pred HH--HHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 360 QI--QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 360 ~~--~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
.. ...+ ..+++.+...+. +++.++..+++++.++...
T Consensus 442 ~~~~~~~~-~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~~ 480 (876)
T d1qgra_ 442 AAINDVYL-APLLQCLIEGLS-AEPRVASNVCWAFSSLAEA 480 (876)
T ss_dssp GTSSTTTH-HHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHh-hhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHH
Confidence 11 0001 113455555554 5789999999999998753
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.93 E-value=6.9e-09 Score=103.05 Aligned_cols=310 Identities=13% Similarity=0.173 Sum_probs=190.6
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhC
Q 015687 77 VAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH 156 (402)
Q Consensus 77 ~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 156 (402)
...+.+.++..+..++..+..+.... ......-.-..+++.++..+.+++ +.++..++++++.++...+.. +...
T Consensus 375 ~~~~~~~~~~~~~~a~~~l~~i~~~~-~~~~~~~~l~~~l~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~---~~~~ 449 (861)
T d2bpta1 375 EQNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAES---IDPQ 449 (861)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGG---SCTT
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhchh---hhhH
Confidence 34556788889988999888886533 222212222346889999999888 999999999999987632211 1112
Q ss_pred CchHHHHHhh---CCCCHHHHHHHHHHHHHhhCC----Cc-hhhHHHHhcCChHHHHHHhc-cchhhHHHHHHHHHHHHh
Q 015687 157 GAVPIFVRLL---SSPTDDVREQAVWALGNVAGD----SP-KCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLSNF 227 (402)
Q Consensus 157 g~i~~L~~lL---~~~~~~v~~~a~~~L~nl~~~----~~-~~~~~~~~~g~i~~L~~~l~-~~~~~~~~~~a~~~L~~l 227 (402)
..++.++..+ ...++.++..+++++.+++.. .. ....... ..+..++.... ...+..++..+..++..+
T Consensus 450 ~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~al~~~ 527 (861)
T d2bpta1 450 QHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYP--ALVDGLIGAANRIDNEFNARASAFSALTTM 527 (861)
T ss_dssp TTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHH--HHHHHHHHHHTCSCCGGGHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHh--hHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 2333333322 135678888888888887632 11 1111111 13444554442 234667888888999988
Q ss_pred hhCCCCCchhhhhchHHHHHHhc----cCCC-----------hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc
Q 015687 228 CRGKPQPLFEQTRPALPALERLI----HSND-----------DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292 (402)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~L~~lL----~~~~-----------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L 292 (402)
....+.........+.+.+...+ .... ..+...++.++..+............ ..+++.+...+
T Consensus 528 i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~l~~~l~~~l 606 (861)
T d2bpta1 528 VEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLL 606 (861)
T ss_dssp HHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHHhhhc
Confidence 87755444444344444433333 2211 12344444455544432221111111 12455566666
Q ss_pred CC-CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Q 015687 293 RH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG 371 (402)
Q Consensus 293 ~~-~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~ 371 (402)
.. .+..++..++.+++.++..........++ .++|.+...+++. ++.++..|+.+++.++...++.....++. +++
T Consensus 607 ~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~-~i~p~l~~~l~~~-~~~v~~~a~~~l~~i~~~~~~~~~~~~~~-i~~ 683 (861)
T d2bpta1 607 EKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSDA-MMN 683 (861)
T ss_dssp HSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHHH-HHH
T ss_pred ccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhHhhHHH-HHH
Confidence 44 45678899999999998754433333333 5788999999888 88999999999999987555555555443 788
Q ss_pred HHHHHhccC--CHHHHHHHHHHHHHhhc
Q 015687 372 PLVNLLLNA--EFEIKKEAAWAISNATS 397 (402)
Q Consensus 372 ~L~~ll~~~--~~~v~~~a~~aL~nl~~ 397 (402)
.|++.+.+. +..++..++.+|+.++.
T Consensus 684 ~L~~~l~~~~~~~~~k~~~~~~l~~i~~ 711 (861)
T d2bpta1 684 VLAQMISNPNARRELKPAVLSVFGDIAS 711 (861)
T ss_dssp HHHHHHHCTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 899998764 46799999999998875
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.86 E-value=4.6e-07 Score=80.94 Aligned_cols=320 Identities=13% Similarity=0.079 Sum_probs=206.1
Q ss_pred cHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHh----hc--CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 015687 72 SLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVI----QS--GVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 72 ~i~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~----~~--g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~ 144 (402)
.+..+++.+.. ..++.....+..+-.++..+ +....++ +. ..-+.+..++..++ .-....+..++..++.
T Consensus 75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d--~~~~~~~~~~~~~~~~~~~~f~~~l~~~d-~~~~~~s~~i~~ll~~ 151 (477)
T d1ho8a_ 75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSD--KYGDDTVKFFQEDPKQLEQLFDVSLKGDF-QTVLISGFNVVSLLVQ 151 (477)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCS--SSSHHHHHHHHHCTTHHHHHHHHCSCSSH-HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcC--cchhHHHHHHhhCccchhHHHHHhccCch-hHHHHHHHHHHHHHHh
Confidence 46778888875 56777778888888888653 3222221 11 12245556665555 6667777778888877
Q ss_pred CCCcchHHHHh-CCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHh--cCChHHHHHHhcc-----------
Q 015687 145 GTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS--NGALMPLLAQFNE----------- 210 (402)
Q Consensus 145 ~~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~g~i~~L~~~l~~----------- 210 (402)
.........-. ......+-.+....+......++.++..+....+ +|..+.. ...+++++..|..
T Consensus 152 ~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~-~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~ 230 (477)
T d1ho8a_ 152 NGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 230 (477)
T ss_dssp TTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred ccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCcc-HHHHHHHcccchHHHHHHHHHHHhcccccchhh
Confidence 54443332111 1233444445577888899899999998887655 7777643 3457777777632
Q ss_pred -----chhhHHHHHHHHHHHHhhhCCCCCchhhh--hchHHHHHHhccC-CChhHHHHHHHHHHHhccCCh-----HHHH
Q 015687 211 -----HAKLSMLRNATWTLSNFCRGKPQPLFEQT--RPALPALERLIHS-NDDEVLTDACWALSYLSDGTN-----DKIQ 277 (402)
Q Consensus 211 -----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~-----~~~~ 277 (402)
....+++..++.+++-|+........... .+.++.++.++.. ..+++..-++.++.|++.... ....
T Consensus 231 ~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~ 310 (477)
T d1ho8a_ 231 ATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ 310 (477)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 12457889999999999875322111111 2457788888854 568899999999999986432 1233
Q ss_pred HHHHhCcHHHHHHhcCC---CChhhHHHHHHHHHHhhc-------CChHHHHH----------------HH---------
Q 015687 278 AVIEAGVCPRLVELLRH---PSPSVLIPALRTVGNIVT-------GDDMQTQC----------------II--------- 322 (402)
Q Consensus 278 ~~~~~~~i~~L~~~L~~---~~~~v~~~a~~~l~nl~~-------~~~~~~~~----------------i~--------- 322 (402)
.++..++++. +..|.. .++++.. .+..+..... .-+++... +.
T Consensus 311 ~~v~~~~l~~-l~~L~~r~~~Dedl~e-dl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e 388 (477)
T d1ho8a_ 311 LLLLGNALPT-VQSLSERKYSDEELRQ-DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK 388 (477)
T ss_dssp HHHHHCHHHH-HHHHHSSCCSSHHHHH-HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred HHHHcchhHH-HHHHhcCCCCCHHHHH-HHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcc
Confidence 4556666654 444532 2444332 2222222221 01112221 21
Q ss_pred -hCCChHHHHHHhcC---------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHH
Q 015687 323 -NHQALPCLLDLLTQ---------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392 (402)
Q Consensus 323 -~~~~l~~L~~ll~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 392 (402)
+..++..|+.+|++ +.++.+..-||.=++.++.+.|..+..+-+-|+=..+++++.++|++||.+|+.|+
T Consensus 389 ~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~av 468 (477)
T d1ho8a_ 389 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKAT 468 (477)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 12467889999852 22778889999999999998888877777889999999999999999999999999
Q ss_pred HHhhc
Q 015687 393 SNATS 397 (402)
Q Consensus 393 ~nl~~ 397 (402)
..+..
T Consensus 469 Qklm~ 473 (477)
T d1ho8a_ 469 QAIIG 473 (477)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=9.5e-08 Score=94.98 Aligned_cols=312 Identities=13% Similarity=0.101 Sum_probs=194.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhcCCCcchHH
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRV 152 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~ 152 (402)
..+++.+.+++. .+..++.++..++..+ -+... -.++++.|++.+.+++ .+.++..++.+|..++..-......
T Consensus 93 ~~ll~~l~~~~~-~~~~~a~~i~~i~~~~--~p~~~--Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~ 167 (876)
T d1qgra_ 93 NYVLHTLGTETY-RPSSASQCVAGIACAE--IPVNQ--WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ 167 (876)
T ss_dssp HHHHHHTTTCCS-SSCHHHHHHHHHHHHH--GGGTC--CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHG
T ss_pred HHHHHHhcCCcH-HHHHHHHHHHHHHHHH--CCccc--cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 456677776554 3445566666665432 11111 1357899999887654 3577888999999987632211110
Q ss_pred HHhCCchHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhhHH-HHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015687 153 VIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDL-VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~-~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (402)
-.-..+++.++..+.+ ++.+++..++.++.+........-.. ....-+++.+...+ .++++.++..++.+|..++.
T Consensus 168 ~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~v~~~~~~~l~~l~~ 246 (876)
T d1qgra_ 168 DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKIMS 246 (876)
T ss_dssp GGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 1112467888887764 56789999999998886543321110 11111334444445 67788999999999999998
Q ss_pred CCCCCchhhh-hchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHH--------------------HHHHhCcHHHH
Q 015687 230 GKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ--------------------AVIEAGVCPRL 288 (402)
Q Consensus 230 ~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~--------------------~~~~~~~i~~L 288 (402)
..+....... ..+.+.+...+.+.++++...++..+..++........ ......+++.+
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 326 (876)
T d1qgra_ 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326 (876)
T ss_dssp HSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 7644333333 34555666777788888888877776666542211110 01111233444
Q ss_pred HHhcCC-------CChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHH
Q 015687 289 VELLRH-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQ 360 (402)
Q Consensus 289 ~~~L~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~ 360 (402)
...+.. .+..++..|..++..++...... ++. .+++.+...+.++ +...|..+++.++.+..+ ....
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~-~~~~~i~~~l~~~-~~~~r~~~~~~l~~~~~~~~~~~ 401 (876)
T d1qgra_ 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IVP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQ 401 (876)
T ss_dssp HHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHH
T ss_pred HHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh---hhh-hhHHHHHHhhccc-hHHHHHHHHHHHHhhhhhhhHHH
Confidence 444432 23457777878877776533221 111 2345666677777 888999999999999875 4455
Q ss_pred HHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 015687 361 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 361 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 397 (402)
....+.. +++.++..+.++++.++..|+|+++.++.
T Consensus 402 ~~~~~~~-~~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 437 (876)
T d1qgra_ 402 LKPLVIQ-AMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (876)
T ss_dssp HHHHHHH-HHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHhhcCCccHHHHHHHHHHHHHHH
Confidence 5554443 78999999999999999999999998875
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.77 E-value=1.3e-07 Score=84.59 Aligned_cols=274 Identities=12% Similarity=0.115 Sum_probs=178.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchh---HHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcch
Q 015687 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPIN---EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (402)
Q Consensus 74 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~---~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 150 (402)
+.+...+.+++......+...+..+++.. ..... .... ....+-.+...++ ...+..++.++..+... ++.+
T Consensus 125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~-~~~~~~~e~l~~--~~~~l~~l~~~~~-~~~~~i~v~~lq~llr~-~~~R 199 (477)
T d1ho8a_ 125 QLFDVSLKGDFQTVLISGFNVVSLLVQNG-LHNVKLVEKLLK--NNNLINILQNIEQ-MDTCYVCIRLLQELAVI-PEYR 199 (477)
T ss_dssp HHHHHCSCSSHHHHHHHHHHHHHHHTSTT-TCCHHHHHHHHH--CHHHHHHHHCTTC-HHHHHHHHHHHHHHHTS-HHHH
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHH--hhHHHHHhhcccc-cchHHHHHHHHHHHhcC-ccHH
Confidence 34455566677777777777777776543 22222 1222 2333333445566 78899999999988875 7788
Q ss_pred HHHHh--CCchHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCCchhhHHHHhc--CChHHHHHHhc
Q 015687 151 RVVID--HGAVPIFVRLLSS-----------------PTDDVREQAVWALGNVAGDSPKCRDLVLSN--GALMPLLAQFN 209 (402)
Q Consensus 151 ~~~~~--~g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~--g~i~~L~~~l~ 209 (402)
..+.+ ...++.|+..|.. .+..+.-.++.+++-++.+.+ ....+.+. +.++.++.++.
T Consensus 200 ~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~l~~~~~~~i~~l~~i~~ 278 (477)
T d1ho8a_ 200 DVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVK 278 (477)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHHhhhHHHHHHHHHHH
Confidence 77654 3345556555532 134678889999998887655 44555444 34888899987
Q ss_pred cchhhHHHHHHHHHHHHhhhCCCCCch------hhhhchHHHHHHhccC---CChhHHHHHHHHHHH-------hcc---
Q 015687 210 EHAKLSMLRNATWTLSNFCRGKPQPLF------EQTRPALPALERLIHS---NDDEVLTDACWALSY-------LSD--- 270 (402)
Q Consensus 210 ~~~~~~~~~~a~~~L~~l~~~~~~~~~------~~~~~~l~~L~~lL~~---~~~~v~~~a~~~l~~-------l~~--- 270 (402)
....+.+.+-++.+|.|++........ ....++++. +..|.. .|+++..+.-..-.. ++.
T Consensus 279 ~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~ 357 (477)
T d1ho8a_ 279 ITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQDISNLKEILENEYQELTSFDE 357 (477)
T ss_dssp HCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 788899999999999999976422211 111334444 444532 477765543222111 111
Q ss_pred -----------CChHHH-HHHHH----------hCcHHHHHHhcC----------CCChhhHHHHHHHHHHhhcCChHHH
Q 015687 271 -----------GTNDKI-QAVIE----------AGVCPRLVELLR----------HPSPSVLIPALRTVGNIVTGDDMQT 318 (402)
Q Consensus 271 -----------~~~~~~-~~~~~----------~~~i~~L~~~L~----------~~~~~v~~~a~~~l~nl~~~~~~~~ 318 (402)
.++... +.+.. -.++..|+.+|. +.++.+..-||.=||.++...|..+
T Consensus 358 Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr 437 (477)
T d1ho8a_ 358 YVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESI 437 (477)
T ss_dssp HHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchh
Confidence 111000 11111 135778888885 2356677889999999999999888
Q ss_pred HHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 015687 319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (402)
Q Consensus 319 ~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 355 (402)
..+-+.|+-..+++++.++ +++||.+|..++.-+..
T Consensus 438 ~il~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~ 473 (477)
T d1ho8a_ 438 DVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG 473 (477)
T ss_dssp HHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 8788889999999999999 99999999999987764
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.67 E-value=2.8e-09 Score=77.93 Aligned_cols=109 Identities=19% Similarity=0.192 Sum_probs=88.3
Q ss_pred ccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHH
Q 015687 250 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPC 329 (402)
Q Consensus 250 L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~ 329 (402)
|.++|+.|+..++++|+.+.. ..++.|+..|.++++.++..|+++|+++.. + +.++.
T Consensus 1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------~~~~~ 57 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEP 57 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------hhHHH
Confidence 456777888888888776532 245778899999999999999999998753 2 34688
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHH
Q 015687 330 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 393 (402)
Q Consensus 330 L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 393 (402)
|..+|.++ ++.||..|+++|+.+. ++. .++.|..+++++++.||..|+.+|.
T Consensus 58 L~~~l~d~-~~~VR~~a~~aL~~i~--~~~---------~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 58 LIKLLEDD-SGFVRSGAARSLEQIG--GER---------VRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHHHHC-CTHHHHHHHHHHHHHC--SHH---------HHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHhhhccc-hhHHHHHHHHHHHHhC--ccc---------hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999988 9999999999999884 333 5678888999999999999998874
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.49 E-value=1.2e-08 Score=74.48 Aligned_cols=108 Identities=19% Similarity=0.241 Sum_probs=86.8
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHH
Q 015687 124 SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMP 203 (402)
Q Consensus 124 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~ 203 (402)
++++ +.+|..|+++|+.+.. ..++.|+..|.++++.+|..|+++|+++.. .+.++.
T Consensus 2 ~D~~-~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~ 57 (111)
T d1te4a_ 2 ADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEP 57 (111)
T ss_dssp CSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHH
T ss_pred CCcC-HHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHH
Confidence 4445 6777777777765432 357889999999999999999999998742 125788
Q ss_pred HHHHhccchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHH
Q 015687 204 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALS 266 (402)
Q Consensus 204 L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~ 266 (402)
|+..+ .++++.++..++++|..+.. ...++.|..++.++++.++..++.+|.
T Consensus 58 L~~~l-~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 58 LIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHhhh-ccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88888 78899999999999998742 467889999999999999999988763
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=0.0015 Score=54.39 Aligned_cols=240 Identities=14% Similarity=0.154 Sum_probs=167.3
Q ss_pred HHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhh----HHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhh
Q 015687 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR----DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (402)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~----~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~ 228 (402)
+...+.+..|+..|..-+-+.|..+..+..++.......+ +.+.. -.+.+..++....++++.-.+-..|..++
T Consensus 65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~--~~eil~~L~~gye~~eiAl~~G~mLREci 142 (330)
T d1upka_ 65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECI 142 (330)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHc--CHHHHHHHHhhcCCcchhhhhhHHHHHHH
Confidence 4445788899999998899999999999999986554433 33432 23444445544456777777778888888
Q ss_pred hCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhC---cHHHHHHhcCCCChhhHHHHHH
Q 015687 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG---VCPRLVELLRHPSPSVLIPALR 305 (402)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~---~i~~L~~~L~~~~~~v~~~a~~ 305 (402)
++..-.......+.+..+.+.+..++-++..+|..++..+..........++..+ .+.....+|.+++.-++..++.
T Consensus 143 k~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlK 222 (330)
T d1upka_ 143 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 222 (330)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred hhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 7754444444466677788888999999999999999988766665555555553 5667778899999999999999
Q ss_pred HHHHhhcCChHH---HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHH-H--cCCHHHHHHHh
Q 015687 306 TVGNIVTGDDMQ---TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAII-E--AGIIGPLVNLL 377 (402)
Q Consensus 306 ~l~nl~~~~~~~---~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~-~--~~~i~~L~~ll 377 (402)
.||.+....... ..++-+..-+..++.+|.+. +..++-+|..++--+.+ ..|..+..++ . ..++..|-+..
T Consensus 223 LLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f~ 301 (330)
T d1upka_ 223 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQ 301 (330)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhCC
Confidence 999999644321 12223345688999999998 99999999999988887 3444455554 3 33455555554
Q ss_pred cc--CCHHHHHHHHHHHHHh
Q 015687 378 LN--AEFEIKKEAAWAISNA 395 (402)
Q Consensus 378 ~~--~~~~v~~~a~~aL~nl 395 (402)
.+ .|.....+=...+..|
T Consensus 302 ~d~~~DeqF~~EK~~lI~~I 321 (330)
T d1upka_ 302 NDRTEDEQFNDEKTYLVKQI 321 (330)
T ss_dssp TTC-CCSHHHHHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHH
Confidence 43 3555655544444444
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=97.57 E-value=3.8e-05 Score=62.69 Aligned_cols=159 Identities=17% Similarity=0.089 Sum_probs=84.4
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchh
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 237 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 237 (402)
.+..|..+++++++.||..+++.|+ .+.+..++ .+++..++..++..+.
T Consensus 67 ~~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~-~D~d~~VR~~aa~~l~------------ 115 (233)
T d1lrva_ 67 PVEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALM-FDEDREVRITVADRLP------------ 115 (233)
T ss_dssp CGGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTT-TCSCHHHHHHHHHHSC------------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHh-cCCChhHHHHHHhccC------------
Confidence 4677888999999999988876542 11233333 5666777766654321
Q ss_pred hhhchHHHHHHhccCCChhHHHHHHHHH-----HHhccC-ChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 015687 238 QTRPALPALERLIHSNDDEVLTDACWAL-----SYLSDG-TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (402)
Q Consensus 238 ~~~~~l~~L~~lL~~~~~~v~~~a~~~l-----~~l~~~-~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~ 311 (402)
.+.|..++.++|..|+..+...+ ..+... +.+....+...-..+.|..+++++++.|+..++..++
T Consensus 116 -----~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L~--- 187 (233)
T d1lrva_ 116 -----LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLR--- 187 (233)
T ss_dssp -----TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCC---
T ss_pred -----HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhcC---
Confidence 12344556666666666655421 011100 1111111111112234444455555555555443321
Q ss_pred cCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 015687 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 390 (402)
Q Consensus 312 ~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 390 (402)
.+.|..++.++ +..||..++ +. +.+.++..|.++++.|+..|+.
T Consensus 188 ---------------~~~L~~l~~D~-d~~VR~aaa------------------e~-~~~~ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 188 ---------------GDDLLELLHDP-DWTVRLAAV------------------EH-ASLEALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp ---------------GGGGGGGGGCS-SHHHHHHHH------------------HH-SCHHHHHHCCCCCHHHHHHHHC
T ss_pred ---------------cHHHHHHHhCC-CHHHHHHHH------------------Hh-ccHHHHHHhCCCCHHHHHHHHH
Confidence 13445555555 666665543 22 3356677888999999998864
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=0.0017 Score=54.16 Aligned_cols=200 Identities=12% Similarity=0.105 Sum_probs=149.4
Q ss_pred HHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCCCchh---hh---hchHHHHHHhccCCChhHHHHHHHHHHH
Q 015687 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE---QT---RPALPALERLIHSNDDEVLTDACWALSY 267 (402)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~---~~~l~~L~~lL~~~~~~v~~~a~~~l~~ 267 (402)
.+...+.+..|+..| ..-+-+.++.++.+++++.+..+..... ++ ..++..|+... +++++.-.+-..|..
T Consensus 64 e~~~~d~l~~Li~~L-~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLRE 140 (330)
T d1upka_ 64 ELYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRE 140 (330)
T ss_dssp HHHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHH
T ss_pred HHHHhChHHHHHHhC-CCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHH
Confidence 344556777788888 7778899999999999999987433322 22 34444555444 355555555556666
Q ss_pred hccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHhC---CChHHHHHHhcCCCchhHHH
Q 015687 268 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKSIKK 344 (402)
Q Consensus 268 l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~---~~l~~L~~ll~~~~~~~v~~ 344 (402)
++.+ +.....++....+..+.+++..++-++...|..++..+.+..+......+.. .++..+.++|.++ +.-+|+
T Consensus 141 cik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~-NYVtrR 218 (330)
T d1upka_ 141 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKR 218 (330)
T ss_dssp HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHH
T ss_pred HHhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCC-chHHHH
Confidence 6654 4456778888889999999999999999999999999998777666666654 3567778899988 999999
Q ss_pred HHHHHHHHHhc--CCHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 015687 345 EACWTISNITA--GNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 345 ~a~~~L~nl~~--~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 398 (402)
.+...|+.+.. .+.......+ +..-+..++.+|.+....++-+|..+.--++..
T Consensus 219 qSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVAN 275 (330)
T d1upka_ 219 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 275 (330)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcC
Confidence 99999999985 3445444454 344588999999999999999999887766554
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=96.64 E-value=0.00086 Score=54.42 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=15.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHH
Q 015687 116 VPRFIEFLSRDDFPQLQFEAAWA 138 (402)
Q Consensus 116 i~~L~~lL~~~~~~~~~~~a~~~ 138 (402)
+..|..++++++ +.++..|+..
T Consensus 68 ~~~L~~Ll~D~d-~~VR~~AA~~ 89 (233)
T d1lrva_ 68 VEALTPLIRDSD-EVVRRAVAYR 89 (233)
T ss_dssp GGGGGGGTTCSS-HHHHHHHHTT
T ss_pred HHHHHHHhcCCC-HHHHHHHHHH
Confidence 445667777777 7888877654
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.51 E-value=0.12 Score=50.57 Aligned_cols=223 Identities=9% Similarity=0.052 Sum_probs=122.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCchhhHHHHh----cCChHHH----HHHhc--cchhhHHHHHHHHHHHHhhhCCCCCchhh
Q 015687 169 PTDDVREQAVWALGNVAGDSPKCRDLVLS----NGALMPL----LAQFN--EHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238 (402)
Q Consensus 169 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~----~g~i~~L----~~~l~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 238 (402)
.+...++.++.+++.++............ ....+.+ ...+. ......++..++|+++..+.... ...
T Consensus 417 ~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~---~~~ 493 (959)
T d1wa5c_ 417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQ 493 (959)
T ss_dssp -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHH
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc---HHH
Confidence 56778888888888876432111100000 0011222 22221 22356788899999999987643 234
Q ss_pred hhchHHHHHHhccCCChhHHHHHHHHHHHhccCChH-----------HHHHHHHhCcHHHHHHhcCCCCh-----hhHHH
Q 015687 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTND-----------KIQAVIEAGVCPRLVELLRHPSP-----SVLIP 302 (402)
Q Consensus 239 ~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~-----------~~~~~~~~~~i~~L~~~L~~~~~-----~v~~~ 302 (402)
...+++.++.+|.+++..++..|++++..++..... .....+ ..++..++..+..... .....
T Consensus 494 ~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l-~~ll~~L~~~l~~~~~~~~~~~~~~~ 572 (959)
T d1wa5c_ 494 LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST-EILLKNLIALILKHGSSPEKLAENEF 572 (959)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhH-HHHHHHHHHHHHhhcchhhhHHHHHH
Confidence 568899999999999999999999999998753211 000001 1223444444432221 12234
Q ss_pred HHHHHHHhhcCC----hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHh
Q 015687 303 ALRTVGNIVTGD----DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLL 377 (402)
Q Consensus 303 a~~~l~nl~~~~----~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll 377 (402)
++.+++.++... ......++. .+.+.+....+++.++.....+.-+++.+.. .+++....+. ..++|.+...+
T Consensus 573 ll~~l~~ii~~~~~~~~~~~~~i~~-~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~-~~l~p~i~~~~ 650 (959)
T d1wa5c_ 573 LMRSIFRVLQTSEDSIQPLFPQLLA-QFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVF 650 (959)
T ss_dssp HHHHHHHHHHHHTTTTGGGHHHHHH-HHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHHHHHHH
Confidence 556666554321 122222221 2222333333444356667777777887764 3344444443 33788888888
Q ss_pred ccCCHHHHHHHHHHHHHhhc
Q 015687 378 LNAEFEIKKEAAWAISNATS 397 (402)
Q Consensus 378 ~~~~~~v~~~a~~aL~nl~~ 397 (402)
.....+....+...+..+..
T Consensus 651 ~~~~~~~~~~~~~l~~~~~~ 670 (959)
T d1wa5c_ 651 SEDIQEFIPYVFQIIAFVVE 670 (959)
T ss_dssp HTTCTTTHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHH
Confidence 77666666666666655543
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.35 E-value=0.027 Score=55.36 Aligned_cols=318 Identities=11% Similarity=0.096 Sum_probs=155.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCch-------hHHh--hcCcHHHHHHhhcCCCCHHHH----HHHHHH
Q 015687 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPI-------NEVI--QSGVVPRFIEFLSRDDFPQLQ----FEAAWA 138 (402)
Q Consensus 72 ~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~-------~~~~--~~g~i~~L~~lL~~~~~~~~~----~~a~~~ 138 (402)
.++.+++.|+++++.++..|+.++..+......... ..+. -..++..++..+......... ..++.+
T Consensus 497 ~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~ 576 (959)
T d1wa5c_ 497 LMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRS 576 (959)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHH
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 467888888899999999999999998754311110 0000 012344555555443211111 224455
Q ss_pred HHHhhcCCCcchHHHHhCCchHHHHHhh----CC-CCHHHHHHHHHHHHHhhCC-CchhhHHHHhcCChHHHHHHhccch
Q 015687 139 LTNIASGTSENTRVVIDHGAVPIFVRLL----SS-PTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHA 212 (402)
Q Consensus 139 L~~l~~~~~~~~~~~~~~g~i~~L~~lL----~~-~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~ 212 (402)
+..+.....+....... .+++.|...+ ++ .++.....+..+++.+... ++..... +....++.+...+ ...
T Consensus 577 l~~ii~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-l~~~l~p~i~~~~-~~~ 653 (959)
T d1wa5c_ 577 IFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVF-SED 653 (959)
T ss_dssp HHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHH-HHHHHHHHHHHHH-hcc
Confidence 55544321221111111 1334444433 32 4566777777788877643 2322222 2233566666666 444
Q ss_pred hhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc
Q 015687 213 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292 (402)
Q Consensus 213 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L 292 (402)
.......+...+..+....+.... .....++.+..............+...+.+......+.... ..+++..+..++
T Consensus 654 ~~~~~~~~~~l~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~l~~~~~~l 730 (959)
T d1wa5c_ 654 IQEFIPYVFQIIAFVVEQSATIPE-SIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPD--LVPVLGIFQRLI 730 (959)
T ss_dssp CTTTHHHHHHHHHHHHHHCSSCCT-TTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSC--SHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCCCccH-HHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHhCHHhhcc--hHHHHHHHHHHH
Confidence 445556666666666655432221 22334444443222222222333334443332111110000 012334444455
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHH-HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHc---
Q 015687 293 RHPSPSVLIPALRTVGNIVTGDDMQ-TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEA--- 367 (402)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~-~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~--- 367 (402)
..... ...++..++.+....+.. ....+. .++..++..+.+...+.+....++.++.++. .++.....+++.
T Consensus 731 ~~~~~--~~~~~~ll~~ii~~~~~~~~~~~l~-~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 807 (959)
T d1wa5c_ 731 ASKAY--EVHGFDLLEHIMLLIDMNRLRPYIK-QIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQD 807 (959)
T ss_dssp TCTTT--HHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTST
T ss_pred CCCcc--hHHHHHHHHHHHHHCchhhhHhHHH-HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhch
Confidence 54432 345667777766544321 221222 3455666666666567788889999998875 456655555553
Q ss_pred CCHHHHH-HH----hcc-CCHHHHHHHHHHHHHhhcC
Q 015687 368 GIIGPLV-NL----LLN-AEFEIKKEAAWAISNATSG 398 (402)
Q Consensus 368 ~~i~~L~-~l----l~~-~~~~v~~~a~~aL~nl~~~ 398 (402)
+.+..++ .. +.. .+..-++.++-+++.+..+
T Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~l~~ll~~ 844 (959)
T d1wa5c_ 808 GLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVIN 844 (959)
T ss_dssp THHHHHHHHTHHHHGGGCCSHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHhcC
Confidence 3333222 22 122 4555666677777776543
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=96.16 E-value=0.21 Score=42.40 Aligned_cols=201 Identities=15% Similarity=0.186 Sum_probs=125.0
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCCCcchHHHHhCCchHHHHHhhCC----CCHHHHHHHHHHHHHhh----C
Q 015687 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVA----G 186 (402)
Q Consensus 115 ~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~----~ 186 (402)
.+..+.+++.+..-+. .+|...+..++.. ..... ..+..+..++.+ .++.++..+.-++|+++ .
T Consensus 89 a~~~i~~~I~~~~ls~--~ea~~~l~~l~~~-~~Pt~-----~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~ 160 (336)
T d1lsha1 89 ALLFLKRTLASEQLTS--AEATQIVASTLSN-QQATR-----ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA 160 (336)
T ss_dssp HHHHHHHHHHTTCSCH--HHHHHHHHHHHHT-CCCCH-----HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCH--HHHHHHHHHHhcc-CCCCH-----HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhc
Confidence 4666777777655222 2344444445443 22222 235556666665 57889999999998886 2
Q ss_pred CCchhhHHHHhcCChHHHHHHhc---cchhhHHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCC-------Chh
Q 015687 187 DSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-------DDE 256 (402)
Q Consensus 187 ~~~~~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~ 256 (402)
..+.+.. ..++.+...+. ...+.+-...++.+|.|+-. ...++.+.+++... +..
T Consensus 161 ~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~i~~l~~~l~~~~~~~~~~~~~ 225 (336)
T d1lsha1 161 NTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYSTR 225 (336)
T ss_dssp TCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCHH
T ss_pred CCCCCcH-----HHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC----------HhHHHHHHHHhcccccccccccHH
Confidence 3332222 23455555542 23455556677888888863 35678888888532 467
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHHHh
Q 015687 257 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 334 (402)
Q Consensus 257 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~--~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll 334 (402)
++..|++++..+....+..+. +.+.+++. ..+.++|..|+..+-.. .+.. ..+..+...+
T Consensus 226 vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t--~P~~--------~~l~~i~~~l 287 (336)
T d1lsha1 226 VQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES--KPSV--------ALVSMVAVRL 287 (336)
T ss_dssp HHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT--CCCH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc--CCCH--------HHHHHHHHHH
Confidence 999999999999877654432 44555553 34578888888877442 2221 2345677777
Q ss_pred cCCCchhHHHHHHHHHHHHhcC
Q 015687 335 TQNYKKSIKKEACWTISNITAG 356 (402)
Q Consensus 335 ~~~~~~~v~~~a~~~L~nl~~~ 356 (402)
....+..|.......|.+++..
T Consensus 288 ~~E~~~QV~sfv~S~l~~la~s 309 (336)
T d1lsha1 288 RREPNLQVASFVYSQMRSLSRS 309 (336)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTC
T ss_pred HhCcHHHHHHHHHHHHHHHHhC
Confidence 6655788888888888899873
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=95.83 E-value=0.44 Score=40.26 Aligned_cols=202 Identities=15% Similarity=0.115 Sum_probs=114.7
Q ss_pred chHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccc---hhhHHHHHHHHHHHHhhh---
Q 015687 158 AVPIFVRLLSSPT--DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH---AKLSMLRNATWTLSNFCR--- 229 (402)
Q Consensus 158 ~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~---~~~~~~~~a~~~L~~l~~--- 229 (402)
++..+.+++.+.. ..-....++.+..... |. .+ .+..+..++... .++.+...+.-+++++..
T Consensus 89 a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~--Pt-~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c 159 (336)
T d1lsha1 89 ALLFLKRTLASEQLTSAEATQIVASTLSNQQ--AT-RE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC 159 (336)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHTCC--CC-HH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhccCC--CC-HH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHh
Confidence 4566666665432 3333344444544332 21 11 344555666321 356666777766666644
Q ss_pred -CCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-------CChhhHH
Q 015687 230 -GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-------PSPSVLI 301 (402)
Q Consensus 230 -~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~-------~~~~v~~ 301 (402)
..+......+..+...+.+.....+.+-..-++.+|+|+.. + +.++.+..++.. ....+|.
T Consensus 160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR~ 228 (336)
T d1lsha1 160 ANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQA 228 (336)
T ss_dssp TTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHHHH
Confidence 33344444445555566666667777777888999999852 2 235677777743 2457999
Q ss_pred HHHHHHHHhhcCChHHHHHHHhCCChHHHHHHh-cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhc-c
Q 015687 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-N 379 (402)
Q Consensus 302 ~a~~~l~nl~~~~~~~~~~i~~~~~l~~L~~ll-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~ 379 (402)
.|++++.++....+.... +.+..++ +..+++++|..|+.+|... .=+....+. +...+. +
T Consensus 229 aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t-~P~~~~l~~---------i~~~l~~E 290 (336)
T d1lsha1 229 EAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES-KPSVALVSM---------VAVRLRRE 290 (336)
T ss_dssp HHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT-CCCHHHHHH---------HHHHHTTC
T ss_pred HHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc-CCCHHHHHH---------HHHHHHhC
Confidence 999999999887664333 3344544 3334688998888887543 222333333 233332 2
Q ss_pred CCHHHHHHHHHHHHHhhc
Q 015687 380 AEFEIKKEAAWAISNATS 397 (402)
Q Consensus 380 ~~~~v~~~a~~aL~nl~~ 397 (402)
.+..|..-....|.|++.
T Consensus 291 ~~~QV~sfv~S~l~~la~ 308 (336)
T d1lsha1 291 PNLQVASFVYSQMRSLSR 308 (336)
T ss_dssp SCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHh
Confidence 445555555555555554
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.73 E-value=0.27 Score=41.71 Aligned_cols=158 Identities=11% Similarity=0.083 Sum_probs=101.2
Q ss_pred HHHHhhcCCC-HHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcC----C------CCHHHHHHHHHHHHHhh
Q 015687 75 AMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D------DFPQLQFEAAWALTNIA 143 (402)
Q Consensus 75 ~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~----~------~~~~~~~~a~~~L~~l~ 143 (402)
..+..|++.- .+.....+..|+--+..+...-++.| ..+++..|+.+|.. . .+...+..++.||..+.
T Consensus 6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm 84 (343)
T d2bnxa1 6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 84 (343)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence 3444554432 23334445555554544322224555 34456667776631 1 12568889999999999
Q ss_pred cCCCcchHHHHhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--chhhHHH----------HhcCChHHHHHHhccc
Q 015687 144 SGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS--PKCRDLV----------LSNGALMPLLAQFNEH 211 (402)
Q Consensus 144 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~--~~~~~~~----------~~~g~i~~L~~~l~~~ 211 (402)
.........+-..+++..+...|.+++..++..|+..|..+|... +.....+ -+.+-+.+++..+...
T Consensus 85 n~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~ 164 (343)
T d2bnxa1 85 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 164 (343)
T ss_dssp SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred ccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcc
Confidence 864444445556789999999999999999999999999998542 2222222 2445677888888666
Q ss_pred hhhHHHHHHHHHHHHhhhCCCC
Q 015687 212 AKLSMLRNATWTLSNFCRGKPQ 233 (402)
Q Consensus 212 ~~~~~~~~a~~~L~~l~~~~~~ 233 (402)
.+.+....++..+-.+..+.+.
T Consensus 165 ~~~ey~~a~m~lIN~li~~~~d 186 (343)
T d2bnxa1 165 TSIALKVGCLQLINALITPAEE 186 (343)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSC
T ss_pred ccHHHHHHHHHHHHHHHcCccc
Confidence 6677777777777777766443
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.17 E-value=1.4 Score=37.17 Aligned_cols=164 Identities=11% Similarity=0.116 Sum_probs=102.4
Q ss_pred CcchHHHHhCCchHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhH
Q 015687 147 SENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS 215 (402)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~ 215 (402)
..+.+.+ ..+++..|+.+|.. .+......++.||..+....++....+-..+.+..++..+ .++...
T Consensus 36 ~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~~ 113 (343)
T d2bnxa1 36 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN 113 (343)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTC-CTTSHH
T ss_pred chHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHcc-CCCchH
Confidence 3455555 34456666666521 2356777899999999888777666677777888888888 778888
Q ss_pred HHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhccCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC
Q 015687 216 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 295 (402)
Q Consensus 216 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~ 295 (402)
++..++..|..+|....... +. ..++.++.+.. ..-+.+-+..++..|...
T Consensus 114 tr~~a~elL~~lc~~~~~~~------g~---------------~~vL~Al~~~~--------~~~e~~RF~~lv~~l~~~ 164 (343)
T d2bnxa1 114 MMIDAAKLLSALCILPQPED------MN---------------ERVLEAMTERA--------EMDEVERFQPLLDGLKSG 164 (343)
T ss_dssp HHHHHHHHHHHHHTCCSSTT------HH---------------HHHHHHHHHHH--------HHHTSCTTHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHhccCCCc------hH---------------HHHHHHHHHHH--------HhcCCCcHHHHHHHHhcc
Confidence 99999999999986532111 11 12222222211 122334566777777554
Q ss_pred -ChhhHHHHHHHHHHhhcCChH------HHHHHHhCCChHHHHHHhcCCCchhH
Q 015687 296 -SPSVLIPALRTVGNIVTGDDM------QTQCIINHQALPCLLDLLTQNYKKSI 342 (402)
Q Consensus 296 -~~~v~~~a~~~l~nl~~~~~~------~~~~i~~~~~l~~L~~ll~~~~~~~v 342 (402)
+......++..|..++.+.+. .+..+...|+.+.+-++=... ++.+
T Consensus 165 ~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~-~~~L 217 (343)
T d2bnxa1 165 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE-NEDM 217 (343)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCC-CHHH
T ss_pred ccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHHHccC-ChHH
Confidence 567888888888888877652 234455667666555544433 4443
|
| >d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: B56-like domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.34 E-value=1.2 Score=37.29 Aligned_cols=189 Identities=13% Similarity=0.057 Sum_probs=106.1
Q ss_pred HhCCchHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCCCC
Q 015687 154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233 (402)
Q Consensus 154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 233 (402)
++...+..|+.++.++|+.=|+.....|.++-+.....|..+.+. +...+.+.+....+..-...+++.+..+..+...
T Consensus 130 id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~~-i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~ 208 (343)
T d2jaka1 130 IDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIINGFAL 208 (343)
T ss_dssp SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccC
Confidence 334567888999999999999999999999977777677665543 4555666664444444556677777777777533
Q ss_pred C-chhhhhchHHHHHHhccCCChh-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 015687 234 P-LFEQTRPALPALERLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (402)
Q Consensus 234 ~-~~~~~~~~l~~L~~lL~~~~~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~v~~~a~~~l~nl~ 311 (402)
+ ......-...+++++.....-. ....-..++......++.....+ +..++.+==.++..=...-+.-|..+.
T Consensus 209 plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~-----i~~llk~WP~t~~~Kev~FL~el~~il 283 (343)
T d2jaka1 209 PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELEEIL 283 (343)
T ss_dssp SCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 2 3333334445556665554322 23333344444443343332211 222333221223323344555566655
Q ss_pred cCC-hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHH
Q 015687 312 TGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 350 (402)
Q Consensus 312 ~~~-~~~~~~i~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 350 (402)
... +...+.+. ..++..+.+.++++ +..|.+.|....
T Consensus 284 ~~~~~~~f~~~~-~~lf~~la~ci~S~-h~qVAErAl~~w 321 (343)
T d2jaka1 284 DVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYW 321 (343)
T ss_dssp HTCCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred HhCCHHHHHHHH-HHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 543 33333232 24566777777777 777777766544
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.24 E-value=0.63 Score=33.78 Aligned_cols=76 Identities=12% Similarity=0.028 Sum_probs=58.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcC------CCCHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR------DDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~------~~~~~~~~~a~~~L~~l~~ 144 (402)
+++..+.+.|++.++..+..|+..|-.++..-.......+...+++..|++++.. .+ ..++..++..+..-+.
T Consensus 45 ~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~-~~Vk~kil~li~~W~~ 123 (145)
T d1ujka_ 45 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS-EKVKNKILELLYSWTV 123 (145)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCc-HHHHHHHHHHHHHHHH
Confidence 4677888899999999999999999888654323344667788899999999963 33 6899889888877665
Q ss_pred CCC
Q 015687 145 GTS 147 (402)
Q Consensus 145 ~~~ 147 (402)
..+
T Consensus 124 ~fp 126 (145)
T d1ujka_ 124 GLP 126 (145)
T ss_dssp HCT
T ss_pred HCC
Confidence 433
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=85.68 E-value=1.6 Score=31.49 Aligned_cols=74 Identities=7% Similarity=0.082 Sum_probs=60.3
Q ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhhHHHHhcCChHHHHHHhccchhhHHHHHHHHHHHHhhhCC
Q 015687 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (402)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (402)
++..|.+-|.++++.++..|+.+|-.+..++ +.++..+...++++.+..++...++..++..++..+...+...
T Consensus 43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 117 (145)
T d1dvpa1 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF 117 (145)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 5677777888899999999999999888764 5577778778888899888866667888989888888877764
|
| >d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: B56-like domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.74 E-value=1 Score=37.81 Aligned_cols=72 Identities=14% Similarity=0.076 Sum_probs=48.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcCC
Q 015687 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT 146 (402)
Q Consensus 73 i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~~~ 146 (402)
+..++..+.|.|+..+......+..+... ....+.++...+-..+.+++.......-..+.+++++.+..+-
T Consensus 135 i~~Ll~lf~S~D~rER~~lk~~l~~iy~k--f~~~R~~Ir~~i~~if~~fi~e~~~~~gI~elLeil~sii~gf 206 (343)
T d2jaka1 135 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF 206 (343)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhc
Confidence 46677788888888888888888777553 3555566666667777777765442344566777777776653
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=82.87 E-value=0.55 Score=34.09 Aligned_cols=74 Identities=12% Similarity=0.089 Sum_probs=56.5
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~l~~ 144 (402)
+++..+.+.|+++++..+..|+..|-.++..-.......+...+++..|..++.+..+..++..++..+...+.
T Consensus 42 ~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (145)
T d1dvpa1 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (145)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 36778888899999999999999999887643223344566778888998888765447889888888877654
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.86 E-value=1.4 Score=31.67 Aligned_cols=75 Identities=13% Similarity=-0.045 Sum_probs=57.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHhhcCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHhhcC
Q 015687 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR-----DDFPQLQFEAAWALTNIASG 145 (402)
Q Consensus 71 ~~i~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~~~~~~a~~~L~~l~~~ 145 (402)
+++..+.+.|+++++..+..|+..|-.++..-.......+....++..|++++.. ..++.++..++..+...+..
T Consensus 38 ~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~ 117 (143)
T d1mhqa_ 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (143)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4677888899999999999999999888765323444567777899999999863 12378999998888777664
|