Citrus Sinensis ID: 015691

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400--
Protein Sequence
MMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVSLNQGESFGVSSMVSHNEFAPSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGANPQFPPLPQSVLDHEFQSLFQMGYDSTSAVDSLGPNGRLKSEL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccHHHccccccccccccccccccccccccccHcccccccccccccccccccccccccHHHHHHHccccccccccccccccccEEcc
Coil and Loop (DISEMBL)
mmpqklpgmqmnsvpmyksvsgpdhfygsgwepivslnqgesfgvssmvshnefapsypvalenqgmsstsnldqyssdpsfvelvpkipgfgsgnfSEMVssfglpenaqiassgcppnyvpnkegcyernsrnvsqsyeDHQICEEAAIgvatngktrkrapesnsllntdknvevelqkdpsgdssgilkeqdEKKQKIEQNtganmrgkqaakptkdsslsgeapkEYIHMRAkrgqatnshsLAERVRREKISERMRLLQELVpgcnkitgkaVMLDEIINYVQSLQQQVEFLSMKLatvnpelnLDIERILSKDILharsgsaatigfssgmnssrpyppgifqgtmpsipganpqfpplpqsvldHEFQSLFQmgydstsavdslgpngrlksel
Flexible Loop (DISEMBL)
mmpqklpgmqmnsVPMYKSVSGPDHFYGSGWEPIVSLNQGESFGVSSMVSHNEFAPSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAaigvatngktrkrapesnsllntdknvevelqkdpsgdssgilkeqdekkqkieqntganmrgkqaakptkdsslsgeAPKEYIHMRakrgqatnshslaeRVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGANPQFPPLPQSVLDHEFQSLFQMGYDStsavdslgpngrlksel
Low Complexity Region (SEG)
MMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVSLNQGESFGVSSMVSHNEFAPSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILkeqdekkqkieqNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGANPQFPPLPQSVLDHEFQSLFQMGYDSTSAVDSLGPNGRLKSEL
Disordered region (IsUnstruct)
************************HFYGSGWEPIVSLNQ*********************************************LVPKIPGF****************************************************IC****I*************************************************************************************************************MRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHAR*****************************************************************************
Disordered Region (DISOPRED)
**************************************************************************************************************************************************************************************************************************************************************EKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLAT**************************************************************************************************
Disordered Region (DISEMBL)
MMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVSLNQGESFGVSSMVSHNEFAPSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTG*******************EAPKEYIHMR**************RVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGANPQFPPLPQSVLDHEFQSLFQMGYDSTSAVDSLGP********
Disordered Region (DISPRO)
************************HFYGSGWEPIVSLNQGESFGVSSMVSHNEFAPSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPP*************************************************************************************************************PKEYIHMRAKRGQ***SHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGANPQFPPLPQSVLDHEFQSLFQMGYDS*****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVSLNQGESFGVSSMVSHNEFAPSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGANPQFPPLPQSVLDHEFQSLFQMGYDSTSAVDSLGPNGRLKSEL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	402	2.2.26 [Sep-21-2011]
Q6NKN9	366	Transcription factor bHLH	yes	no	0.823	0.904	0.467	5e-72
Q9CAA9	486	Transcription factor bHLH	no	no	0.661	0.547	0.414	2e-49
Q9C670	390	Transcription factor bHLH	no	no	0.611	0.630	0.422	2e-44
Q9SRT2	456	Transcription factor bHLH	no	no	0.345	0.304	0.556	2e-40
Q9LK48	371	Transcription factor bHLH	no	no	0.522	0.566	0.442	6e-40
Q9FJL4	498	Transcription factor bHLH	no	no	0.238	0.192	0.731	9e-38
Q8GY61	335	Transcription factor bHLH	no	no	0.417	0.501	0.457	4e-37
Q9ZPW3	337	Transcription factor bHLH	no	no	0.524	0.626	0.433	2e-36
Q93W88	286	Transcription factor bHLH	no	no	0.380	0.534	0.503	1e-35
Q93VJ4	304	Transcription factor BEE	no	no	0.380	0.503	0.522	2e-35

>sp|Q6NKN9|BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1

 Score =  271 bits (694), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 187/400 (46%), Positives = 243/400 (60%), Gaps = 69/400 (17%)

Query: 11  MNSVPMYKSVSGPDHFYGSG-WEPIVSLNQGESFGVSSMVSHNEFAPSYPVALENQGMSS 69
           + S+P+Y      D F+ S  W+P+V+         ++  S + + PS  +A++N GMS 
Sbjct: 28  ITSMPLYAKA---DPFFSSADWDPVVN-------AAAAGFSSSHYHPS--MAMDNPGMSC 75

Query: 70  TSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSS---FGLPENAQIASSGCPPNYVPNKE 126
            S+                 PG  SG  ++M +S   FG     QI           +K+
Sbjct: 76  FSHYQ---------------PGSVSGFAADMPASLLPFGDCGGGQIGHF-----LGSDKK 115

Query: 127 GCYERNSRNVSQSYEDH-QICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPS 185
           G  ER  R    S+EDH Q+ ++A +G +  GK  +R PE+ S  N  K VE E Q+DP 
Sbjct: 116 G--ERLIRAGESSHEDHHQVSDDAVLGASPVGK--RRLPEAESQWNK-KAVE-EFQEDPQ 169

Query: 186 GDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKE-YIHMRAKRGQATN 244
             +     +Q +KK K +Q+       K+     K+SS S EAPKE YIHMRA+RGQATN
Sbjct: 170 RGN-----DQSQKKHKNDQS-------KETV--NKESSQSEEAPKENYIHMRARRGQATN 215

Query: 245 SHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLAT 304
           SHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLAT
Sbjct: 216 SHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLAT 275

Query: 305 VNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPG-ANPQF 363
           VNPE+N+DI+RIL+KD+L +R  +  T+G +         P   FQG +P++    NPQ+
Sbjct: 276 VNPEINIDIDRILAKDLLQSRDRNTPTLGLN---------PFAGFQGNIPNLSATTNPQY 326

Query: 364 PPLPQSVLDHEFQSLFQMGYDST-SAVDSLGPNGRLKSEL 402
            PLPQ+ L+ E Q+L+QMG+ S  S + S  PNGRLK EL
Sbjct: 327 NPLPQTTLESELQNLYQMGFVSNPSTMSSFSPNGRLKPEL 366

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1

 Score =  196 bits (499), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 133/321 (41%), Positives = 180/321 (56%), Gaps = 55/321 (17%)

Query: 73  LDQYSSDPSFVELVPKIPGFGSGNFSEMVS-------SFGL------PENAQIASS---- 115
           + Q+ +D  F+E   +   F  GNFS+MV+       + GL          Q  S+    
Sbjct: 123 MAQFPADSGFIERAARFSLFSGGNFSDMVNQPLGNSEAIGLFLQGGGTMQGQCQSNELNV 182

Query: 116 GCPPNYV----------------PNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKT 159
           G P N V                PN  G     S NVS+  +      +     ++N K 
Sbjct: 183 GEPHNDVSVAVKESTVRSSEQAKPNVPG-----SGNVSEDTQSSGGNGQKGRETSSNTKK 237

Query: 160 RKRAPESNS-LLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKI--EQNTGANMRGKQAA 216
           RKR  + NS    + ++ + E + D +GD     K  DE+      +++     +GKQ++
Sbjct: 238 RKRNGQKNSEAAQSHRSQQSEEEPDNNGDE----KRNDEQSPNSPGKKSNSGKQQGKQSS 293

Query: 217 KPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITG 276
            P KD          YIH+RA+RGQATNSHSLAERVRREKISERM+ LQ+LVPGCNK+TG
Sbjct: 294 DPPKDG---------YIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTG 344

Query: 277 KAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAATIGFSS 336
           KAVMLDEIINYVQSLQ+QVEFLSMKLATVNP+++ ++E +L+KD L  R+GS++T  F  
Sbjct: 345 KAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFNLEGLLAKDALQLRAGSSSTTPFPP 404

Query: 337 GMNSSR-PYPPGIFQGTMPSI 356
            M+ +  P P G  Q T+ SI
Sbjct: 405 NMSMAYPPLPHGFMQQTLSSI 425

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C670|BH076_ARATH Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1

 Score =  180 bits (456), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/284 (42%), Positives = 156/284 (54%), Gaps = 38/284 (13%)

Query: 72  NLDQYSSDPSFVELVPKIPGFGSGNF--SEMVSSFGLPE-------NAQIASSGCPPNYV 122
           N+ Q+ +D  F+E   K   FG G    ++  SS G+P+       + QI S G   +  
Sbjct: 73  NMAQFPADSGFIERAAKFSFFGCGEMMMNQQQSSLGVPDSTGLFLQDTQIPS-GSKLDNG 131

Query: 123 PNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQK 182
           P  +       R+++   ED Q         A  G+T  +   S       K+ E     
Sbjct: 132 PLTDASKLVKERSINNVSEDSQSSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCE----- 186

Query: 183 DPSGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQA 242
                      E+++KKQK EQ+  +N     + K   DS   G     YIHMRA+RGQA
Sbjct: 187 -----------EEEDKKQKDEQSPTSNANKTNSEKQPSDSLKDG-----YIHMRARRGQA 230

Query: 243 TNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKL 302
           TNSHSLAERVRREKISERM+ LQ+LVPGC+K+TGKAVMLDEIINYVQSLQ Q+EFLSMKL
Sbjct: 231 TNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKL 290

Query: 303 ATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPP 346
           + VNP L+ ++E +L+KD L +   SA T       N S  YPP
Sbjct: 291 SAVNPVLDFNLESLLAKDALQS---SAPTFPH----NMSMLYPP 327

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1

 Score =  167 bits (422), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/151 (55%), Positives = 113/151 (74%), Gaps = 12/151 (7%)

Query: 184 PSGDSSGILKEQDEKKQK------------IEQNTGANMRGKQAAKPTKDSSLSGEAPKE 231
           P+G+SSG L  + + K K            IE+   ++ +  + ++   D + S +  K+
Sbjct: 195 PAGESSGELSRKRKTKSKQNSPSAVSSSKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKD 254

Query: 232 YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSL 291
           YIH+RA+RGQAT+SHSLAERVRREKISERM+LLQ+LVPGCNK+TGKA+MLDEIINYVQSL
Sbjct: 255 YIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSL 314

Query: 292 QQQVEFLSMKLATVNPELNLDIERILSKDIL 322
           Q+QVEFLSMKL++VN  L+ +++ +LSKDI 
Sbjct: 315 QRQVEFLSMKLSSVNTRLDFNMDALLSKDIF 345

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK48|BH077_ARATH Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1

 Score =  165 bits (417), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 103/233 (44%), Positives = 138/233 (59%), Gaps = 23/233 (9%)

Query: 161 KRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTK 220
           K +P S+SL  ++  V        SG++ G  K     KQ +  ++   +    +    K
Sbjct: 126 KESPASSSLTASNSKV--------SGENGGS-KGGKRSKQDVAGSSKNGVEKCDSKGDNK 176

Query: 221 DSSLSGEAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVM 280
           D +   EAPK+YIH+RA+RGQAT+SHSLAER RREKISERM LLQ+LVPGCN+ITGKAVM
Sbjct: 177 DDAKPPEAPKDYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVM 236

Query: 281 LDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNS 340
           LDEIINYVQSLQ+QVEFLSMKLATVNP +  +    LS +++    G + T    +   S
Sbjct: 237 LDEIINYVQSLQRQVEFLSMKLATVNPRMEFNANASLSTEMIQP--GESLTQSLYAMACS 294

Query: 341 SRPYPPGIFQ--GTMPSIPGANPQFPP--------LPQSVLDHEFQSLFQMGY 383
            +  P   +     MP    ++ QFP          P    +++ QS+ QMG+
Sbjct: 295 EQRLPSAYYSLGKNMPRF--SDTQFPSNDGFVHTETPGFWENNDLQSIVQMGF 345

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJL4|BH078_ARATH Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1

 Score =  157 bits (398), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 90/97 (92%), Gaps = 1/97 (1%)

Query: 227 EAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIIN 286
           E PK+YIH+RA+RGQAT+SHSLAERVRREKI ERM+LLQ+LVPGCNK+TGKA+MLDEIIN
Sbjct: 293 EPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIIN 352

Query: 287 YVQSLQQQVEFLSMKLATVN-PELNLDIERILSKDIL 322
           YVQSLQ+QVEFLSMKL++VN   L+ +++ ++SKD++
Sbjct: 353 YVQSLQRQVEFLSMKLSSVNDTRLDFNVDALVSKDVM 389

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1

 Score =  155 bits (393), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 128/188 (68%), Gaps = 20/188 (10%)

Query: 145 ICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKI-E 203
           I  E  +G    G  +KR  ++ +    +K  ++ + +D       +++E +E+K KI E
Sbjct: 80  ISPETTLGT---GNFKKRKFDTETKDCNEKKKKMTMNRDD------LVEEGEEEKSKITE 130

Query: 204 QNTGA--NMRGKQAAKPTKDSSLSGEAPK--------EYIHMRAKRGQATNSHSLAERVR 253
           QN G+  +++  +     ++++ S ++ K        +YIH+RA+RGQAT+SHS+AERVR
Sbjct: 131 QNNGSTKSIKKMKHKAKKEENNFSNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVR 190

Query: 254 REKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDI 313
           REKISERM+ LQ+LVPGC+KITGKA MLDEIINYVQSLQ+Q+EFLSMKLA VNP  + D+
Sbjct: 191 REKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIEFLSMKLAIVNPRPDFDM 250

Query: 314 ERILSKDI 321
           + I +K++
Sbjct: 251 DDIFAKEV 258

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPW3|BH064_ARATH Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3

 Score =  154 bits (388), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/242 (43%), Positives = 139/242 (57%), Gaps = 31/242 (12%)

Query: 84  ELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDH 143
           EL+  +   GS N   + SSF      Q+  SG  PNY       +E  SR  S   E  
Sbjct: 47  ELLQILQFHGSNNDELLESSFS---QFQMLGSGFGPNYNMGFGPPHESISRTSSCHMEPV 103

Query: 144 QICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIE 203
              E   + + T  +TR  A      L   +  EV+ +++          ++ EKK K+E
Sbjct: 104 DTME---VLLKTGEETRAVA------LKNKRKPEVKTREE----------QKTEKKIKVE 144

Query: 204 QNTGANMRGKQAAKPTKDSS-LSGEAPK--------EYIHMRAKRGQATNSHSLAERVRR 254
             T ++M+GK     T+ SS  S E  K        +YIH+RA+RGQAT+ HSLAER RR
Sbjct: 145 AETESSMKGKSNMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARR 204

Query: 255 EKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIE 314
           EKIS++M+ LQ++VPGCNK+TGKA MLDEIINYVQ LQ+QVEFLSMKLA +NPEL L +E
Sbjct: 205 EKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNPELELAVE 264

Query: 315 RI 316
            +
Sbjct: 265 DV 266

Arabidopsis thaliana (taxid: 3702)

>sp|Q93W88|BH137_ARATH Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1

 Score =  150 bits (380), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/157 (50%), Positives = 107/157 (68%), Gaps = 4/157 (2%)

Query: 198 KKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAERVRREKI 257
           +K +   N+   + G+++ K  + S    E P +YIH+RA+RGQAT+SHSLAERVRREKI
Sbjct: 101 RKARNSNNSKEGVEGRKSKKQKRGSK--EEPPTDYIHVRARRGQATDSHSLAERVRREKI 158

Query: 258 SERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERIL 317
           SERMR LQ LVPGC+K+TGKA+MLDEIINYVQ+LQ QVEFLSMKL +++P +  D    L
Sbjct: 159 SERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSISPVV-YDFGSDL 217

Query: 318 SKDILHARSGSAAT-IGFSSGMNSSRPYPPGIFQGTM 353
              IL +  GS      F++ M ++ P  P +   ++
Sbjct: 218 DGLILQSEMGSPEVGTSFTNAMPTTTPIFPSLLDNSV 254

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VJ4|BEE2_ARATH Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1

 Score =  150 bits (379), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/157 (52%), Positives = 108/157 (68%), Gaps = 4/157 (2%)

Query: 190 GILKEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPK-EYIHMRAKRGQATNSHSL 248
           G  +++++KK K E  T  +M+GK     T+ SS   E  K +YIH+RA+RG+AT+ HSL
Sbjct: 98  GKTEKREKKKIKAEDETEPSMKGKSNMSNTETSS---EIQKPDYIHVRARRGEATDRHSL 154

Query: 249 AERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPE 308
           AER RREKIS++M+ LQ++VPGCNK+TGKA MLDEIINYVQSLQQQVEFLSMKL+ +NPE
Sbjct: 155 AERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVEFLSMKLSVINPE 214

Query: 309 LNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYP 345
           L   I+ + +K      +G        S M   R +P
Sbjct: 215 LECHIDDLSAKQFQAYFTGPPEGDSKQSIMADFRSFP 251

Positive regulator of brassinosteroid signaling.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	402
255537964	408	DNA binding protein, putative [Ricinus c	0.930	0.916	0.672	1e-139
225458914	430	PREDICTED: transcription factor bHLH74 [	0.982	0.918	0.646	1e-133
224081861	407	predicted protein [Populus trichocarpa]	0.952	0.941	0.635	1e-130
224067162	330	predicted protein [Populus trichocarpa]	0.815	0.993	0.679	1e-120
147818198	484	hypothetical protein VITISV_034133 [Viti	0.910	0.756	0.593	1e-115
356552284	429	PREDICTED: transcription factor bHLH74-l	0.910	0.853	0.599	1e-112
356577684	435	PREDICTED: transcription factor bHLH74-l	0.962	0.889	0.576	1e-112
125664136	400	basic helix-loop-helix protein [Sesamum	0.912	0.917	0.555	1e-107
449509268	402	PREDICTED: transcription factor bHLH74-l	0.898	0.898	0.568	1e-105
359494803	415	PREDICTED: transcription factor bHLH74-l	0.930	0.901	0.489	1e-86

>gi|255537964|ref|XP_002510047.1| DNA binding protein, putative [Ricinus communis] gi|223550748|gb|EEF52234.1| DNA binding protein, putative [Ricinus communis]

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 255/379 (67%), Positives = 304/379 (80%), Gaps = 5/379 (1%)

Query: 26  FYGSGWEPIVSLNQGESFGVSSMVSHNEFAPS-YPVALENQGMSSTSNLDQYSSDPSFVE 84
           F+   W+P+VSLNQ E+FG +SMVS +EF  S Y + +ENQG++S+S+L  Y SD S+VE
Sbjct: 33  FFPPAWDPVVSLNQHENFG-ASMVSQSEFTNSHYAIVMENQGINSSSHLVHYQSDSSYVE 91

Query: 85  LVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQ 144
           LVPK P +GSG+FSEMVSSFGL +  QI++SGC PNY  N     ER   N + S EDHQ
Sbjct: 92  LVPKFPSYGSGSFSEMVSSFGLTDCGQISNSGCHPNYTSNSAANNERTITNSALSQEDHQ 151

Query: 145 ICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQ 204
           + EE  +GV+ +GK RKR  E +S  + +KN E E+ KDPSG+SS I KEQDEKK + EQ
Sbjct: 152 LSEEPVVGVSPDGKRRKRLAEPSSPFDPNKNAE-EMHKDPSGNSSDIPKEQDEKKSRTEQ 210

Query: 205 NTGANMRGKQAAKPTKDSSLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERMRL 263
           NT AN+RGKQAAK  K++S SGEAPKE YIH+RA+RGQATNSHSLAERVRREKISERMRL
Sbjct: 211 NTAANLRGKQAAKQAKENSHSGEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRL 270

Query: 264 LQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILH 323
           LQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELN+DIERILSKDILH
Sbjct: 271 LQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNIDIERILSKDILH 330

Query: 324 ARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGANPQFPPLPQSVLDHEFQSLFQMGY 383
           +R G+AA +G S G+N + PY  GIF   +P IP  NPQFPP+P +VL+++ Q+LFQMG+
Sbjct: 331 SRGGNAAIMGLSPGIN-AHPYSHGIFPPNIPVIPNTNPQFPPMPHTVLENDLQNLFQMGF 389

Query: 384 DSTSAVDSLGPNGRLKSEL 402
           DS SA+DSLGPNGRLK EL
Sbjct: 390 DSGSAIDSLGPNGRLKPEL 408

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458914|ref|XP_002285475.1| PREDICTED: transcription factor bHLH74 [Vitis vinifera] gi|302142156|emb|CBI19359.3| unnamed protein product [Vitis vinifera]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 260/402 (64%), Positives = 309/402 (76%), Gaps = 7/402 (1%)

Query: 4   QKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVSLNQGESFGVSSMVSHNEFAPS-YPVAL 62
           +K+ GM M+S  MYKS +G D F+GSGW+PIVSL+Q E+FG SSMVSH+EFA S YPV L
Sbjct: 33  EKVTGMTMSSASMYKSSNGGDPFFGSGWDPIVSLSQNENFGGSSMVSHSEFANSAYPVVL 92

Query: 63  ENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYV 122
           ENQG+ ST +L  Y S+ S VE+VPK+P FGSG+FSEMV+SFGLPE  Q A+SGCPPN+ 
Sbjct: 93  ENQGIGSTPHLVLYPSNSSLVEMVPKLPCFGSGSFSEMVASFGLPECGQTANSGCPPNFP 152

Query: 123 PNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQK 182
           PNKEG  E+ S N +QS E HQI E  A+  + +GK RK + +    LNT K+ + E  K
Sbjct: 153 PNKEGLTEK-SLNGAQSQEGHQISEGDAVDASPSGKRRKSSFDPRPPLNTSKSADGEQPK 211

Query: 183 DPSGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKE-YIHMRAKRGQ 241
               ++S   KEQ+EKK KI+QN   N+RGKQ  K  KD+S +GEAPKE YIH+RA+RGQ
Sbjct: 212 GLPWENSEFSKEQEEKKLKIDQNMSPNLRGKQPNKHAKDNSSNGEAPKENYIHVRARRGQ 271

Query: 242 ATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMK 301
           ATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMK
Sbjct: 272 ATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMK 331

Query: 302 LATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGANP 361
           LATVNPELN+DIER+LSKDIL++R GS + +GF  GM+SS PYP GI QGT+P IP   P
Sbjct: 332 LATVNPELNIDIERLLSKDILNSRGGSTSVLGFGPGMSSSHPYPHGISQGTLPGIP--TP 389

Query: 362 QFPPLPQSVLDHEFQSLFQMGYDSTSAVDSLGPN-GRLKSEL 402
           QF    Q+V D E QSL QMG+DS  + ++LG N GR K EL
Sbjct: 390 QFHST-QAVWDGELQSLLQMGFDSNPSSNNLGTNAGRSKLEL 430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081861|ref|XP_002306505.1| predicted protein [Populus trichocarpa] gi|222855954|gb|EEE93501.1| predicted protein [Populus trichocarpa]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 255/401 (63%), Positives = 296/401 (73%), Gaps = 18/401 (4%)

Query: 5   KLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVSLNQGESFGVSSMVSHNEFAPS-YPVALE 63
           K P   MN+ P          FY S W+P+VSL+Q  +FG SS  S +EF+ S +P+ +E
Sbjct: 22  KCPSSGMNTNP----------FYVSAWDPVVSLSQLGNFGGSSTGSQSEFSNSPFPIVME 71

Query: 64  NQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVP 123
           N G+S+T +L  Y SD  FVELVPK PGFGSGNFSEMV S GL E  QI ++GCPPNY  
Sbjct: 72  NPGISNTCHLVHYPSDSGFVELVPKFPGFGSGNFSEMVGSVGLTECGQIVNAGCPPNY-- 129

Query: 124 NKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKD 183
            KE   E  +   +Q  ED Q+ EE  IG   NGK R+   ESNS  + +KN E E QKD
Sbjct: 130 -KEANNESTAHG-AQREEDQQLSEETTIGALPNGKRRRLVAESNSPFDPNKNAEGEFQKD 187

Query: 184 PSGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKE-YIHMRAKRGQA 242
           PSG+SS I KE DEKKQKIEQN  AN+RGKQ AK  KD+  SGEAPK+ YIH+RA+RGQA
Sbjct: 188 PSGESSDIAKELDEKKQKIEQNCSANLRGKQVAKQAKDNPQSGEAPKDDYIHVRARRGQA 247

Query: 243 TNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKL 302
           TNSHSLAERVRREKISERMR+LQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKL
Sbjct: 248 TNSHSLAERVRREKISERMRMLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKL 307

Query: 303 ATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGANPQ 362
           ATVNPEL  D+E+I SKDILH+R G+AA +GFS G+NS + Y  GIFQ  +P I  +NPQ
Sbjct: 308 ATVNPELYNDVEKIQSKDILHSRGGNAAILGFSPGINSHQ-YSHGIFQPGIPVILNSNPQ 366

Query: 363 FPPLPQSVLDHEFQSLFQMGYDSTSAVDSLGPN-GRLKSEL 402
           F P   +VLD+E QS FQMG+DS+SAVDSLGPN G LK EL
Sbjct: 367 FSPAHHAVLDNELQSFFQMGFDSSSAVDSLGPNAGHLKPEL 407

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067162|ref|XP_002302386.1| predicted protein [Populus trichocarpa] gi|222844112|gb|EEE81659.1| predicted protein [Populus trichocarpa]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/343 (67%), Positives = 263/343 (76%), Gaps = 15/343 (4%)

Query: 62  LENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNY 121
           +EN G+S   NL  Y S   FVELVPK PGFGSGNFSEMV S GL E  QI  +GCPPNY
Sbjct: 1   MENPGIS---NLVHYPSGSGFVELVPKFPGFGSGNFSEMVGSLGLTECGQITHTGCPPNY 57

Query: 122 VPNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQ 181
             NKE        N +Q  ED Q+ EE +IG + NGK RKR PESNS L+ +KN E EL+
Sbjct: 58  --NKEA-------NNAQHQEDQQLSEETSIGASPNGKRRKRVPESNSPLDPNKNTEGELR 108

Query: 182 KDPSGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKE-YIHMRAKRG 240
           KD SG+S  I KE DEK QK EQN G N+RGKQAAK  KD + SGE PKE Y H+RA+RG
Sbjct: 109 KDLSGESCDIAKELDEKTQKTEQNPGPNLRGKQAAKQAKDDTQSGEVPKENYFHVRARRG 168

Query: 241 QATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSM 300
           QATNSHSLAERVRREKISERMR+LQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSM
Sbjct: 169 QATNSHSLAERVRREKISERMRMLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSM 228

Query: 301 KLATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGAN 360
           KLATVNPEL +D+ERILSKDILH+R G+AA +GFS G+ SS PY   IFQ  +  IP +N
Sbjct: 229 KLATVNPELQIDVERILSKDILHSRGGNAAILGFSPGI-SSHPYSHRIFQPGIQVIPNSN 287

Query: 361 PQFPPLPQSVLDHEFQSLFQMGYDSTSAVDSLGPN-GRLKSEL 402
           PQF P P +VLD+E QS FQMG+DS+SA+D+LGPN  RLK EL
Sbjct: 288 PQFSPAPHAVLDNELQSYFQMGFDSSSAIDNLGPNAARLKPEL 330

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818198|emb|CAN60403.1| hypothetical protein VITISV_034133 [Vitis vinifera]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 234/394 (59%), Positives = 283/394 (71%), Gaps = 28/394 (7%)

Query: 4   QKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVSLNQGESFGVSSMVSHNEFAPS-YPVAL 62
           +K+ GM M+S  MYKS +G D F+GSGW+PIVSL+Q E+FG SSMVSH+EFA S YPV L
Sbjct: 33  EKVTGMTMSSASMYKSSNGGDPFFGSGWDPIVSLSQNENFGGSSMVSHSEFANSAYPVVL 92

Query: 63  ENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYV 122
           ENQG+ ST +L  Y S+ S VE+VPK+P FGSG+FSEMV+SFGLPE  Q A+SGCPPN+ 
Sbjct: 93  ENQGIGSTPHLVLYPSNSSLVEMVPKLPCFGSGSFSEMVASFGLPECGQTANSGCPPNFP 152

Query: 123 PNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQK 182
           PNKEG  E+ S N +QS E HQI E  A+  + +GK RK + +    LNT K+ + E  K
Sbjct: 153 PNKEGLTEK-SLNGAQSQEGHQISEGDAVDASPSGKRRKSSFDPRPPLNTSKSADGEQPK 211

Query: 183 DPSGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKE-YIHMRAKRGQ 241
               ++S   KEQ+EKKQKI+QN   N+RGKQ  K  KD+S +GEAPKE YIH+RA+RGQ
Sbjct: 212 GLPWENSEFSKEQEEKKQKIDQNMSPNLRGKQPNKHAKDNSSNGEAPKENYIHVRARRGQ 271

Query: 242 ATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMK 301
           ATNSHSLAER                      ITGKAVMLDEIINYVQSLQQQVEFLSMK
Sbjct: 272 ATNSHSLAER----------------------ITGKAVMLDEIINYVQSLQQQVEFLSMK 309

Query: 302 LATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGANP 361
           LATVNPELN+DIER+LSKDIL++R GS + +GF  GM+SS PYP GI QGT+P IP   P
Sbjct: 310 LATVNPELNIDIERLLSKDILNSRGGSTSVLGFGPGMSSSHPYPHGISQGTLPGIP--TP 367

Query: 362 QFPPLPQSVLDHEFQSLFQMGYDSTSAVDSLGPN 395
           QF    Q+V D E QSL QMG+DS  + ++LG N
Sbjct: 368 QFHST-QAVWDGELQSLLQMGFDSNPSSNNLGTN 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552284|ref|XP_003544498.1| PREDICTED: transcription factor bHLH74-like [Glycine max]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/382 (59%), Positives = 279/382 (73%), Gaps = 16/382 (4%)

Query: 29  SGWEPIVSLNQGESFGVSSMVSHNEFA---PSYPVALENQGMSSTSNLDQYSSDPSFVEL 85
           S W+P+VSL+Q +SFG SSMVSH+EFA    SYP+ L+NQG+S+TS+L QY SD +   +
Sbjct: 56  SAWDPLVSLSQVQSFGGSSMVSHSEFANSNSSYPLVLDNQGISNTSHLVQYMSDSNLGGM 115

Query: 86  VPKIPGFGSGNFSEMVS--SFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDH 143
           VPK+  + SG FSEMV   SF    +A +A++G P +Y P KE        N  QS  + 
Sbjct: 116 VPKVHSYASGGFSEMVGAGSFCQHRSADMANTGYPIHYNPIKEAPI-----NGEQSQVED 170

Query: 144 QICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIE 203
            I EE A G A +G  RKR  + NS  + +KN E +   D  G +S   KE  EK+ K E
Sbjct: 171 SIPEEEAPGSAPSGNRRKRGLDHNSTFSPNKNAEGDAVNDSPGKASNGPKEH-EKRPKGE 229

Query: 204 QNTGANMRGKQAAKPTKDS-SLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERM 261
           QN GA++RGKQ+ K  KD+ S SGEAPKE +IH+RA+RGQATNSHSLAERVRREKISERM
Sbjct: 230 QNNGADVRGKQSVKQAKDNNSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERM 289

Query: 262 RLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDI 321
           RLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELN D++RILSKDI
Sbjct: 290 RLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVDRILSKDI 349

Query: 322 LHARSGSAATIG-FSSGMNSSRPYPPGIFQGTMPSIPGANPQFPPLPQSVLDHEFQSLFQ 380
           L +R G    IG +  G+NSS  +P G F GT+  +P  + QFPPLPQ+VLDHEFQS + 
Sbjct: 350 LQSRIGHG--IGAYGPGINSSHTFPNGSFHGTLAGMPSTSSQFPPLPQNVLDHEFQSFYG 407

Query: 381 MGYDSTSAVDSLGPNGRLKSEL 402
           +GYDS +A+D+L PNGRLK+EL
Sbjct: 408 IGYDSNTALDNLEPNGRLKTEL 429

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577684|ref|XP_003556954.1| PREDICTED: transcription factor bHLH74-like [Glycine max]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/406 (57%), Positives = 287/406 (70%), Gaps = 19/406 (4%)

Query: 9   MQMNSVPMYK--SVSGPDHFYGSGWEPIVSLNQGESFGVSSMVSHNEFA---PSYPVALE 63
           M ++SV M K  +V        S W+P+VSL+Q ++FG SSMVSHNEF     SYP+ L+
Sbjct: 37  MAISSVSMAKPSNVVANPFLASSTWDPLVSLSQAQTFGGSSMVSHNEFVNANSSYPLVLD 96

Query: 64  NQG-MSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSS--FGLPENAQIASSGCPPN 120
           NQG +S+TS+L QY SD +   +VPK+  + SG FSEMV S  F    +  +A +G P +
Sbjct: 97  NQGGISNTSHLVQYMSDSNLGGIVPKVHSYASGGFSEMVGSGSFCQHGSGDMADTGYPTH 156

Query: 121 YVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVEL 180
           Y P KE        N  QS  +  I EE A G A +G  RKR  + NS  + +KN E + 
Sbjct: 157 YNPIKEAPI----INGEQSQVEDSIPEEEAPGSAPSGNRRKRGLDHNSTFSPNKNAEGDA 212

Query: 181 QKDPSGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTKDS--SLSGEAPKE-YIHMRA 237
            KD  G +S   KE  EK+ K+EQN GA++RGKQ+ K  KD+  S SGEAPKE +IH+RA
Sbjct: 213 VKDSPGKASDGSKEH-EKRPKVEQNNGADVRGKQSVKQAKDNNNSQSGEAPKENFIHVRA 271

Query: 238 KRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEF 297
           +RGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEF
Sbjct: 272 RRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEF 331

Query: 298 LSMKLATVNPELNLDIERILSKDILHARSGSAATIG-FSSGMNSSRPYPPGIFQGTMPSI 356
           LSMKLATVNPELN D++RILSKDIL +R G    IG +  G+NSS  +P G F GT+  +
Sbjct: 332 LSMKLATVNPELNFDVDRILSKDILQSRIGHG--IGAYGPGINSSHTFPNGSFHGTLAGM 389

Query: 357 PGANPQFPPLPQSVLDHEFQSLFQMGYDSTSAVDSLGPNGRLKSEL 402
              + QFPPLPQ+VLDHEFQS + +GYDS +A+D+LGPNGRLK+EL
Sbjct: 390 SSTSSQFPPLPQNVLDHEFQSFYGIGYDSNTALDNLGPNGRLKTEL 435

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125664136|gb|ABN51065.1| basic helix-loop-helix protein [Sesamum indicum]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/400 (55%), Positives = 273/400 (68%), Gaps = 33/400 (8%)

Query: 6   LPGMQMNSVPMYKSVSGPDHFYGS-GWEPIVSLNQGESFGVSSMVSHNEFA-PSYPVALE 63
           + GM + S  M+K  +G D FY S GW+P++S +Q  +FG SSMV  NEFA P+YPV LE
Sbjct: 31  VAGMSICSESMFKPPNGIDPFYSSSGWDPVISQDQSGNFGNSSMVLQNEFANPNYPVLLE 90

Query: 64  NQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVP 123
           NQ M S+S+L  + SD   V +VPKIP FGSG+FSE+VSSFG              N+  
Sbjct: 91  NQTMGSSSHLVHFPSDSGLVGMVPKIPSFGSGSFSEIVSSFG------------HSNFAQ 138

Query: 124 NKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKD 183
           N     +   +NV  + +  Q  E   +G + NGK RKR           KNVEVE QKD
Sbjct: 139 NNGAGVQNTVKNVEDAQDHRQDSENGVLGASPNGK-RKR-----------KNVEVEKQKD 186

Query: 184 PSGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKE-YIHMRAKRGQA 242
            + D + + KE DEKK     N+G + R +QA K  KD+S   EA KE YIH+RAKRGQA
Sbjct: 187 QTRDLAELPKEYDEKK-----NSGPSSRSRQAVKEAKDNSSGAEASKENYIHVRAKRGQA 241

Query: 243 TNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKL 302
           TNSHSLAERVRRE+ISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKL
Sbjct: 242 TNSHSLAERVRRERISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKL 301

Query: 303 ATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGANPQ 362
           ATVNPELN+DIER+LSKDILH+R  +A  +G   G++SS P+  G+ QGT+ + PG  PQ
Sbjct: 302 ATVNPELNVDIERLLSKDILHSRGSNATALGIGPGLSSSHPF-QGLPQGTLNAFPGTAPQ 360

Query: 363 FPPLPQSVLDHEFQSLFQMGYDSTSAVDSLGPNGRLKSEL 402
           F  LPQ++ ++E Q++ Q GYDS  +V SLGP+G  K EL
Sbjct: 361 FQSLPQNLWNNELQNILQNGYDSNPSVGSLGPSGLSKMEL 400

Source: Sesamum indicum

Species: Sesamum indicum

Genus: Sesamum

Family: Pedaliaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449509268|ref|XP_004163540.1| PREDICTED: transcription factor bHLH74-like [Cucumis sativus]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/387 (56%), Positives = 271/387 (70%), Gaps = 26/387 (6%)

Query: 26  FYGSGWEPIVSLNQGESFGV-SSMVS-HNEFAPSYPVALENQGMSSTSNLD-QYSSDPSF 82
           F+GSGW+P+VSL Q E++G  SSMVS H EF+ S+PV LEN G S T+    QY +D   
Sbjct: 30  FFGSGWDPLVSLGQSENYGAASSMVSSHGEFSNSFPVVLENHGGSGTTQQGVQYPTD--- 86

Query: 83  VELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYED 142
           +E+  K+P FGSGNFSEM  SFG+    QI   GC  NY           +     S E+
Sbjct: 87  LEMGSKLPCFGSGNFSEMFGSFGVA--GQILG-GCSSNYR------NGGTTNTTQTSQEN 137

Query: 143 HQICEEAAIGVAT---NGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKK 199
             +  E  + ++    NGK RKR  +S    +++K  +++L+KD SGDSS     Q+EK 
Sbjct: 138 LPLAGEEILPLSVGSPNGKIRKRGLDSTFPFSSNKKSDMKLKKDVSGDSS---STQEEKN 194

Query: 200 QKIEQNTGANMRGKQAAKPTKD-SSLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKI 257
            ++EQN G N RGK   K TK+ SS S EAPKE YIH+RA+RGQATNSHSLAERVRREKI
Sbjct: 195 AEMEQNLGGNSRGKSTGKQTKEKSSNSAEAPKENYIHVRARRGQATNSHSLAERVRREKI 254

Query: 258 SERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERIL 317
           SERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNP++N+DIERIL
Sbjct: 255 SERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNVDIERIL 314

Query: 318 SKDILHARSGSAATIGFSSGMNSSRPYPPGI---FQGTMPSIPGANPQFPPLPQSVLDHE 374
           SKDI + R  S   +GF  G+++  P PP     FQGTM S+P  + QFPP+PQ++L+ +
Sbjct: 315 SKDIFNIRGSSGNVLGFDPGLSAVSPVPPHRMFQFQGTMSSMPTTSTQFPPMPQTMLESD 374

Query: 375 FQSLFQMGYDSTSAVDSLGPNGRLKSE 401
            QSL QMG+DS S +D+LGPNGRLK E
Sbjct: 375 LQSLLQMGFDSGSTIDNLGPNGRLKPE 401

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494803|ref|XP_003634844.1| PREDICTED: transcription factor bHLH74-like [Vitis vinifera] gi|296090643|emb|CBI41042.3| unnamed protein product [Vitis vinifera]

 Score =  326 bits (835), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 193/394 (48%), Positives = 247/394 (62%), Gaps = 20/394 (5%)

Query: 19  SVSGPDHFYGSGWEPIVSL-NQGESFGVSSMVSHNEFAPSYP-VALENQGMSSTSNLDQY 76
           S++G    +   ++P V L +  +  G+  + +H++    Y   ALENQGMSST +L QY
Sbjct: 32  SLNGVTSIFTGDYDPPVPLAHNADIIGLPPLKTHDQIDDLYAGNALENQGMSSTIHLTQY 91

Query: 77  SSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYE----RN 132
           SSDP FVELVP  P F +  FSEMV+   LP+   I   GCPP++   K G  +    +N
Sbjct: 92  SSDPRFVELVPNFPHFSTAGFSEMVTPRCLPKCHNI---GCPPDHPLEKNGTRKTSNLQN 148

Query: 133 SRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGIL 192
             N     E  QI ++  + ++   K RKR  +  S     KN+E    KD        L
Sbjct: 149 KTNNCAQMEGCQIADDGTMELSPIEKKRKRLADDRSQFAHLKNMEAAQPKDEC------L 202

Query: 193 KEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKE-YIHMRAKRGQATNSHSLAER 251
             QDE+KQK EQ   AN  GK      K SS +GEAPKE YIH+RAKRGQATNSHSLAER
Sbjct: 203 GRQDERKQKAEQKIVANNCGKLIGAEVKMSSQTGEAPKEDYIHVRAKRGQATNSHSLAER 262

Query: 252 VRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNL 311
           VRRE+ISERM+ LQ+LVPGCNKITGKAVMLDEIINYVQSLQ+QVEFLSMKLATV PE+N+
Sbjct: 263 VRRERISERMKFLQDLVPGCNKITGKAVMLDEIINYVQSLQRQVEFLSMKLATVYPEMNV 322

Query: 312 DIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGANPQ---FPPLPQ 368
            IERILS DI H++ G+A  +GF  GMNS+ P P    Q   P+I  +  Q     P+P 
Sbjct: 323 QIERILSSDIHHSKGGTAPILGFGPGMNSAYPIPQVTLQAISPAIESSTLQSSPMSPMP- 381

Query: 369 SVLDHEFQSLFQMGYDSTSAVDSLGPNGRLKSEL 402
           +V D+E Q + QMG+ ST+ +++L  +G  K +L
Sbjct: 382 NVWDNELQGIKQMGFTSTADLENLETSGCTKVQL 415

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	402
TAIR|locus:2201906	366	AT1G10120 "AT1G10120" [Arabido	0.614	0.674	0.543	1.6e-61
UNIPROTKB|Q5VR96	437	P0038C05.31-1 "Os06g0275600 pr	0.718	0.661	0.423	1.4e-46
TAIR|locus:2205420	486	AT1G68920 [Arabidopsis thalian	0.529	0.438	0.486	4.4e-45
UNIPROTKB|Q69JJ6	428	OSJNBa0026C08.22 "TA1 protein-	0.773	0.726	0.384	1.5e-44
TAIR|locus:2079676	456	AT3G07340 "AT3G07340" [Arabido	0.251	0.221	0.732	3.6e-42
UNIPROTKB|Q5N802	481	P0004D12.24 "BHLH transcriptio	0.611	0.511	0.422	5.3e-40
UNIPROTKB|Q84LH4	327	OSJNBb0011H13.2 "Putative Heli	0.350	0.431	0.631	5.3e-40
UNIPROTKB|Q6ZCV8	365	P0028A08.20 "Os08g0487700 prot	0.370	0.408	0.583	1.3e-38
TAIR|locus:2095198	371	AT3G23690 "AT3G23690" [Arabido	0.783	0.849	0.362	3.4e-38
TAIR|locus:2028804	390	CIB5 "AT1G26260" [Arabidopsis	0.604	0.623	0.403	8.9e-38

TAIR|locus:2201906 AT1G10120 "AT1G10120" [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 150/276 (54%), Positives = 184/276 (66%)

Query:   130 ERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSS 189
             ER  R    S+EDH    + A+ +  +   ++R PE+ S  N  K VE E Q+DP   + 
Sbjct:   117 ERLIRAGESSHEDHHQVSDDAV-LGASPVGKRRLPEAESQWNK-KAVE-EFQEDPQRGND 173

Query:   190 GILXXXXXXXXXXXXNTGANMRGKQAAKPTKDSSLSGEAPKE-YIHMRAKRGQATNSHSL 248
                                N + K+     K+SS S EAPKE YIHMRA+RGQATNSHSL
Sbjct:   174 ------------QSQKKHKNDQSKETVN--KESSQSEEAPKENYIHMRARRGQATNSHSL 219

Query:   249 AERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPE 308
             AERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPE
Sbjct:   220 AERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPE 279

Query:   309 LNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGA-NPQFPPLP 367
             +N+DI+RIL+KD+L +R  +  T+G +       P+  G FQG +P++    NPQ+ PLP
Sbjct:   280 INIDIDRILAKDLLQSRDRNTPTLGLN-------PFA-G-FQGNIPNLSATTNPQYNPLP 330

Query:   368 QSVLDHEFQSLFQMGYDST-SAVDSLGPNGRLKSEL 402
             Q+ L+ E Q+L+QMG+ S  S + S  PNGRLK EL
Sbjct:   331 QTTLESELQNLYQMGFVSNPSTMSSFSPNGRLKPEL 366

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q5VR96 P0038C05.31-1 "Os06g0275600 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 133/314 (42%), Positives = 168/314 (53%)

Query:    66 GMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSS-F-GLPENAQIASSGCPPNYVP 123
             GM S      + + P FV+     P +  GN   M++  F G+ +      +G  P    
Sbjct:    79 GMLSAGAPPPFVATPGFVDSTAGFPCYNGGNLGAMINHPFPGIHQPLGDFQNGVEP--CR 136

Query:   124 NKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKD 183
               E      S+NVSQ+ E  Q   E    V ++ K     P  N     D+   V   K 
Sbjct:   137 EIEDIEIEGSKNVSQTGEKQQGDGETTHAVDSSSKELSM-PGRNGGAGHDEGTRVSCSKK 195

Query:   184 P--SGDSSGI--------LXXXXXXXXXXXXNTGANMR-----GKQAAKPTKDSSLSGEA 228
                SG   G+        L              G   R     GK + K  KD++  G  
Sbjct:   196 RKRSGQDGGVKHAEGGEQLATVGSAQKNEDDEKGEPKRSSVASGKSSGKQIKDNA--GSP 253

Query:   229 PKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYV 288
              ++YIH+RA+RGQATNSHSLAERVRREKISERM+ LQ+LVPGC+K+TGKAVMLDEIINYV
Sbjct:   254 KEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYV 313

Query:   289 QSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAAT-IGFSSGMNSSRPYPPG 347
             QSLQ+QVEFLSMKLA+VNP L+ +IERILSKDI   R  +A++  GF   +   R +PP 
Sbjct:   314 QSLQRQVEFLSMKLASVNPTLDFNIERILSKDIFQCRGTTASSAFGFFPDIVHPRLHPPK 373

Query:   348 IFQGTMPSIPGANP 361
               Q  MPSI   NP
Sbjct:   374 YTQVGMPSI--VNP 385

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2205420 AT1G68920 [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 110/226 (48%), Positives = 145/226 (64%)

Query:   133 SRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNS-LLNTDKNVEVELQKDPSGDSSGI 191
             S NVS+  +      +     ++N K RKR  + NS    + ++ + E + D +GD    
Sbjct:   211 SGNVSEDTQSSGGNGQKGRETSSNTKKRKRNGQKNSEAAQSHRSQQSEEEPDNNGDEKRN 270

Query:   192 LXXXXXXXXXXXXNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAER 251
                          N+G   +GKQ++ P KD          YIH+RA+RGQATNSHSLAER
Sbjct:   271 -DEQSPNSPGKKSNSG-KQQGKQSSDPPKDG---------YIHVRARRGQATNSHSLAER 319

Query:   252 VRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNL 311
             VRREKISERM+ LQ+LVPGCNK+TGKAVMLDEIINYVQSLQ+QVEFLSMKLATVNP+++ 
Sbjct:   320 VRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDF 379

Query:   312 DIERILSKDILHARSGSAATIGFSSGMNSSRP-YPPGIFQGTMPSI 356
             ++E +L+KD L  R+GS++T  F   M+ + P  P G  Q T+ SI
Sbjct:   380 NLEGLLAKDALQLRAGSSSTTPFPPNMSMAYPPLPHGFMQQTLSSI 425

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q69JJ6 OSJNBa0026C08.22 "TA1 protein-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 131/341 (38%), Positives = 178/341 (52%)

Query:    73 LDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQ-IASSGCPPNYVPNKEGCYER 131
             L  +  D  F+E   +   FG G  +     +G  + A   A  G     + +       
Sbjct:    94 LGHFPVDSGFIERAARSTCFGGGMMAG--GPYGAADQAMGDAFGGTAEGLMDHHRNVGND 151

Query:   132 NSRNVSQSYEDHQICEEAAIG-VATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSG 190
              +   + +  D     E A G  ++ G   K+    N ++ TD+     L  D + +S  
Sbjct:   152 KAEEFAGNGHDEVPSSEVAGGDCSSKGSDSKKRRRPNEVMGTDQVHSSNLPSDSANES-- 209

Query:   191 ILXXXXXXXXXXXXNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAE 250
             +               G   +GK  AK T +S       +EYIH+RA+RGQATNSHSLAE
Sbjct:   210 VHSKDKGEESSPATTNGGKSKGK-GAKETSESQ-----KEEYIHVRARRGQATNSHSLAE 263

Query:   251 RVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELN 310
             R+RREKISERM+LLQ+LVPGC+K+TGKAVMLDEIINYVQSLQ+QVEFLSMKLATVNP L+
Sbjct:   264 RLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLD 323

Query:   311 LDIERILSKDILHARSGSAATIGFSSGMNSSRPY--PPGIFQGTMPSIPGANPQ-FPPLP 367
             L+IE +LSKD+L      +++IGFS  M   +     PG+  G    +  ANP  F  + 
Sbjct:   324 LNIEGLLSKDLLRFPGVPSSSIGFSPEMMHPQLQLSQPGLIHGGTAGM--ANPDVFRRII 381

Query:   368 Q--------SVLDHE----FQSLFQMGYDSTSAVD-SLGPN 395
             Q        S + H     F  + QM Y S  + D S+ P+
Sbjct:   382 QAQLGAKDGSQMPHSLNGSFSDVSQMAYPSLGSQDLSIRPS 422

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2079676 AT3G07340 "AT3G07340" [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
 Identities = 74/101 (73%), Positives = 92/101 (91%)

Query:   221 DSSLSGEAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVM 280
             D + S +  K+YIH+RA+RGQAT+SHSLAERVRREKISERM+LLQ+LVPGCNK+TGKA+M
Sbjct:   244 DKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALM 303

Query:   281 LDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDI 321
             LDEIINYVQSLQ+QVEFLSMKL++VN  L+ +++ +LSKDI
Sbjct:   304 LDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDALLSKDI 344

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q5N802 P0004D12.24 "BHLH transcription factor" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 118/279 (42%), Positives = 155/279 (55%)

Query:    59 PVALENQGMSSTSNLDQYSSDPSFVELVPKIPGF------GSGNFSEM-VSSFGLPENAQ 111
             P+ LEN  +    +LDQ+ +DP F E   ++ GF      G G +     + FGLP+   
Sbjct:   103 PI-LEN--LMPMGHLDQFLADPGFAERAARLSGFDARGGGGGGGYGGAGPAQFGLPDAGA 159

Query:   112 IASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLN 171
               +S         KE     N+R+ S   +      E     A++G  RKR         
Sbjct:   160 AGAS---------KE-MELGNTRDESSVSDPAPGGAEIPPKGASDGNARKRKASGKGK-G 208

Query:   172 TDKNVEVELQKDPSGDSSGI-LXXXXXXXXXXXXNTG------ANMRGKQAAKPTKDSSL 224
              D  +     K+   DSSG               N+G      +N       K  KDSS 
Sbjct:   209 KDSPMSTSAAKE---DSSGKRCKSTEESNAAAEENSGKGKAAQSNSENGGGKKQGKDSSS 265

Query:   225 SG-EAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDE 283
                E PK+YIH+RA+RG+AT+SHSLAERVRREKIS+RM+LLQ+LVPGCNK+ GKAVMLDE
Sbjct:   266 KPPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDE 325

Query:   284 IINYVQSLQQQVEFLSMKLATVNPELNLD-IERILSKDI 321
             IINYVQSLQ+QVEFLSMKLATVNP+L+ + +  +L+KD+
Sbjct:   326 IINYVQSLQRQVEFLSMKLATVNPQLDFNNLPNLLAKDM 364

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q84LH4 OSJNBb0011H13.2 "Putative Helix-loop-helix DNA-binding domain containing protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 91/144 (63%), Positives = 112/144 (77%)

Query:   213 KQAAK-PTKDSSLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPG 270
             K  +K  +K+ S  G+  KE Y+H+RAKRGQATNSHSLAER+RR+KISERM+LLQ+LVPG
Sbjct:   123 KSCSKMQSKEDSSDGDGTKEDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPG 182

Query:   271 CNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAA 330
             C+KITGKAVMLDEIINYVQSLQ+QVEFLSMKLATVNPEL+ DIE+ILSK ++ ++    A
Sbjct:   183 CSKITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPELSFDIEQILSKQMMLSQDRHLA 242

Query:   331 TIGFSSGMNSS-RPYPPGIFQGTM 353
               G   G ++    +  GI Q  M
Sbjct:   243 FYGVDPGSSALVAHFNQGIMQPEM 266

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q6ZCV8 P0028A08.20 "Os08g0487700 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 98/168 (58%), Positives = 121/168 (72%)

Query:   212 GKQAAKPTKDSSLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPG 270
             GK   K  KD+   GEA KE Y H+RA++GQATN+HSLAER+RREKISERM+LLQ+LVPG
Sbjct:   155 GKSKGKGAKDA---GEAQKEGYSHVRARKGQATNNHSLAERLRREKISERMKLLQDLVPG 211

Query:   271 CNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERIL--SKDILH-ARSG 327
             C+K+TGKA+MLDEIINYVQSLQ+QVEFLSMKL+ VNP ++LDIE ++  SKD+L      
Sbjct:   212 CSKVTGKALMLDEIINYVQSLQRQVEFLSMKLSAVNPRIDLDIESLVNNSKDVLRFPGQP 271

Query:   328 SAATIGFS------SGMNSSRPYPPGIFQGTMPSIPGANPQ-FPPLPQ 368
             S+A +GFS       G+  SRP   GI QG +  +   NP  F  L Q
Sbjct:   272 SSAPMGFSFSTEMMPGLQLSRP---GILQGGVHGM--INPDVFTSLMQ 314

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2095198 AT3G23690 "AT3G23690" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 123/339 (36%), Positives = 172/339 (50%)

Query:    57 SYPVALENQGMSSTSNLDQYSSDPSFVELVP-KIPGFGSGNFSEMVSSFGLPENAQIASS 115
             S P    N+G      L +Y ++P   E+ P  +  F S N S++  +F  P +  I   
Sbjct:    19 SDPFGNGNEGTIGDF-LGRYCNNPQ--EISPLTLQSF-SLN-SQISENF--PISGGIRFP 71

Query:   116 GCPPNYVPNKE-GCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDK 174
               P  +  ++E G       +   S  D     +      +N + RK  P  N   +   
Sbjct:    72 PYPGQFGSDREFGSQPTTQESNKSSLLDPDSVSDRVHTTKSNSRKRKSIPSGNGKESPAS 131

Query:   175 NVEVELQKDPSGDSSGILXXXXXXXXXXXXNTGANMRGKQAAK-PTKDSSLSGEAPKEYI 233
             +         SG++ G               +  N   K  +K   KD +   EAPK+YI
Sbjct:   132 SSLTASNSKVSGENGG--SKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAPKDYI 189

Query:   234 HMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQ 293
             H+RA+RGQAT+SHSLAER RREKISERM LLQ+LVPGCN+ITGKAVMLDEIINYVQSLQ+
Sbjct:   190 HVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQR 249

Query:   294 QVEFLSMKLATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTM 353
             QVEFLSMKLATVNP +  +    LS +++  + G + T    + M  S    P  +    
Sbjct:   250 QVEFLSMKLATVNPRMEFNANASLSTEMI--QPGESLTQSLYA-MACSEQRLPSAYYSLG 306

Query:   354 PSIPG-ANPQFPP--------LPQSVLDHEFQSLFQMGY 383
              ++P  ++ QFP          P    +++ QS+ QMG+
Sbjct:   307 KNMPRFSDTQFPSNDGFVHTETPGFWENNDLQSIVQMGF 345

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2028804 CIB5 "AT1G26260" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 111/275 (40%), Positives = 146/275 (53%)

Query:    72 NLDQYSSDPSFVELVPKIPGFGSGNF--SEMVSSFGLPENAQI------ASSGCPPNYVP 123
             N+ Q+ +D  F+E   K   FG G    ++  SS G+P++  +        SG   +  P
Sbjct:    73 NMAQFPADSGFIERAAKFSFFGCGEMMMNQQQSSLGVPDSTGLFLQDTQIPSGSKLDNGP 132

Query:   124 NKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKD 183
               +       R+++   ED Q         A  G+T  +   S       K+ E E  K 
Sbjct:   133 LTDASKLVKERSINNVSEDSQSSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCEEEEDKK 192

Query:   184 PSGDSSGILXXXXXXXXXXXXNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQAT 243
                + S                + AN    +  K   DS   G     YIHMRA+RGQAT
Sbjct:   193 QKDEQSP--------------TSNANKTNSE--KQPSDSLKDG-----YIHMRARRGQAT 231

Query:   244 NSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLA 303
             NSHSLAERVRREKISERM+ LQ+LVPGC+K+TGKAVMLDEIINYVQSLQ Q+EFLSMKL+
Sbjct:   232 NSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLS 291

Query:   304 TVNPELNLDIERILSKDILHARSGSAATIGFSSGM 338
              VNP L+ ++E +L+KD L +   SA T   +  M
Sbjct:   292 AVNPVLDFNLESLLAKDALQS---SAPTFPHNMSM 323

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009911 "positive regulation of flower development" evidence=IGI

GO:0048513 "organ development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NKN9	BH074_ARATH	No assigned EC number	0.4675	0.8233	0.9043	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	402
smart00353	53	smart00353, HLH, helix loop helix domain	1e-11
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	1e-10
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	3e-08

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 247 SLAERVRREKISERMRLLQELVPGCNKITG--KAVMLDEIINYVQSLQQQVE 296
           +  ER RR KI+E    L+ L+P   K     KA +L   I Y++SLQ++++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 239 RGQATNSHSLAERVRREKISERMRLLQELVPGCNKITG--KAVMLDEIINYVQSLQQQVE 296
           R     +H+L ER RRE+I++    L+ L+P         KA +L + ++Y++SLQ+ ++
Sbjct: 1   RKSRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 49.4 bits (119), Expect = 3e-08
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 245 SHSLAERVRREKISERMRLLQELVPGCN--KITGKAVMLDEIINYVQSLQ 292
           +H+  ER RR++I++    L+EL+P     K++ KA +L   I Y++ LQ
Sbjct: 4   AHNERERRRRDRINDAFEELRELLPTPPNKKLS-KAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	402
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.36
smart00353	53	HLH helix loop helix domain.	99.31
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.29
KOG1318	411	consensus Helix loop helix transcription factor EB	99.17
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	98.95
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.37
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	98.07
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	97.94
PLN03217	93	transcription factor ATBS1; Provisional	97.75
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	97.71
KOG0561	373	consensus bHLH transcription factor [Transcription	97.4
KOG3960	284	consensus Myogenic helix-loop-helix transcription	96.83
KOG4029	228	consensus Transcription factor HAND2/Transcription	96.58
KOG3910	632	consensus Helix loop helix transcription factor [T	94.92
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	88.33
KOG3560	712	consensus Aryl-hydrocarbon receptor [Transcription	84.36

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.36  E-value=6.6e-13  Score=99.28  Aligned_cols=53  Identities=36%  Similarity=0.627  Sum_probs=48.7

Q ss_pred             CCccchhHHHhHHHHHHHHHHHhccCCCC---CCCCChhhhHHHHHHHHHHHHHHHH
Q 015691          243 TNSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVE  296 (402)
Q Consensus       243 ~~~HslaERrRRekIner~~~Lr~LVP~~---~K~tdKAsIL~eAIdYIk~LQ~QVq  296 (402)
                      +..|+..||+||++||+.|..|+.+||.+   .+ .+|++||+.||+||++|+.+++
T Consensus         5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k-~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKK-LSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHhC
Confidence            35799999999999999999999999998   55 5999999999999999998863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.31  E-value=4.4e-12  Score=93.36  Aligned_cols=49  Identities=39%  Similarity=0.596  Sum_probs=44.6

Q ss_pred             chhHHHhHHHHHHHHHHHhccCCC---CCCCCChhhhHHHHHHHHHHHHHHHH
Q 015691          247 SLAERVRREKISERMRLLQELVPG---CNKITGKAVMLDEIINYVQSLQQQVE  296 (402)
Q Consensus       247 slaERrRRekIner~~~Lr~LVP~---~~K~tdKAsIL~eAIdYIk~LQ~QVq  296 (402)
                      +..||+||++||+.|..|+.+||.   ..++ +|++||++||+||++|+.+++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~-~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKL-SKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence            468999999999999999999996   4464 999999999999999999986

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.29  E-value=3.8e-12  Score=95.19  Aligned_cols=48  Identities=40%  Similarity=0.724  Sum_probs=44.7

Q ss_pred             CccchhHHHhHHHHHHHHHHHhccCCCC-----CCCCChhhhHHHHHHHHHHHH
Q 015691          244 NSHSLAERVRREKISERMRLLQELVPGC-----NKITGKAVMLDEIINYVQSLQ  292 (402)
Q Consensus       244 ~~HslaERrRRekIner~~~Lr~LVP~~-----~K~tdKAsIL~eAIdYIk~LQ  292 (402)
                      ..|+..||+||++||+.|..|+.+||.+     .+ .+|++||+.||+||++||
T Consensus         3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k-~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRK-LSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSS-SSHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccchhcccccc-CCHHHHHHHHHHHHHHhC
Confidence            3699999999999999999999999997     45 599999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=99.17  E-value=2.6e-11  Score=124.12  Aligned_cols=60  Identities=33%  Similarity=0.617  Sum_probs=51.6

Q ss_pred             cCCCcCCccchhHHHhHHHHHHHHHHHhccCCCCC----CCCChhhhHHHHHHHHHHHHHHHHHH
Q 015691          238 KRGQATNSHSLAERVRREKISERMRLLQELVPGCN----KITGKAVMLDEIINYVQSLQQQVEFL  298 (402)
Q Consensus       238 kR~~a~~~HslaERrRRekIner~~~Lr~LVP~~~----K~tdKAsIL~eAIdYIk~LQ~QVq~L  298 (402)
                      |.++.++.|+++|||||++||++|+.|..|||.|.    +. +|..||..+++||++||+..+..
T Consensus       229 rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~-nKgtILk~s~dYIr~Lqq~~q~~  292 (411)
T KOG1318|consen  229 RDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKS-NKGTILKASCDYIRELQQTLQRA  292 (411)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhc-ccchhhHHHHHHHHHHHHHHHHH
Confidence            33444569999999999999999999999999994    43 79999999999999999877643

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=98.95  E-value=4.5e-10  Score=105.23  Aligned_cols=65  Identities=32%  Similarity=0.546  Sum_probs=58.7

Q ss_pred             CccchhHHHhHHHHHHHHHHHhccCCCCC-------CCCChhhhHHHHHHHHHHHHHHHHHHHhhhhhcCCcc
Q 015691          244 NSHSLAERVRREKISERMRLLQELVPGCN-------KITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEL  309 (402)
Q Consensus       244 ~~HslaERrRRekIner~~~Lr~LVP~~~-------K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~~~~~p~~  309 (402)
                      ..|.-+||+||+.|+..+..|+.|||.|.       | +.||.||.++|+||.+|++++..-+.++.+|+.++
T Consensus        64 ~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~K-lskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~v  135 (229)
T KOG1319|consen   64 RAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQK-LSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDV  135 (229)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHhccccccccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999999999774       5 37999999999999999999999999988887664

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.37  E-value=1.3e-07  Score=91.80  Aligned_cols=55  Identities=27%  Similarity=0.393  Sum_probs=47.6

Q ss_pred             ccchhHHHhHHHHHHHHHHHhccCCCCCCC-------CChhhhHHHHHHHHHHHHHHHHHHH
Q 015691          245 SHSLAERVRREKISERMRLLQELVPGCNKI-------TGKAVMLDEIINYVQSLQQQVEFLS  299 (402)
Q Consensus       245 ~HslaERrRRekIner~~~Lr~LVP~~~K~-------tdKAsIL~eAIdYIk~LQ~QVq~Le  299 (402)
                      .|.+.|||||.|||+.+..|++|||.+.++       .+||.||+-|++|++.||.+...--
T Consensus        35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~~   96 (250)
T KOG4304|consen   35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAAA   96 (250)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccccc
Confidence            689999999999999999999999976443       2799999999999999997655433

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=98.07  E-value=3.2e-06  Score=93.17  Aligned_cols=52  Identities=21%  Similarity=0.375  Sum_probs=47.6

Q ss_pred             CCccchhHHHhHHHHHHHHHHHhccCCCCC---CCCChhhhHHHHHHHHHHHHHH
Q 015691          243 TNSHSLAERVRREKISERMRLLQELVPGCN---KITGKAVMLDEIINYVQSLQQQ  294 (402)
Q Consensus       243 ~~~HslaERrRRekIner~~~Lr~LVP~~~---K~tdKAsIL~eAIdYIk~LQ~Q  294 (402)
                      +.+|+.+|||||+++|..|.+|.+|||.|.   .+.||-+||.+||++||.++.+
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            458999999999999999999999999997   4459999999999999998875

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=97.94  E-value=1.6e-05  Score=76.87  Aligned_cols=63  Identities=22%  Similarity=0.325  Sum_probs=51.7

Q ss_pred             CCccchhHHHhHHHHHHHHHHHhccCCCCCCCC--ChhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 015691          243 TNSHSLAERVRREKISERMRLLQELVPGCNKIT--GKAVMLDEIINYVQSLQQQVEFLSMKLATV  305 (402)
Q Consensus       243 ~~~HslaERrRRekIner~~~Lr~LVP~~~K~t--dKAsIL~eAIdYIk~LQ~QVq~Le~~~~~~  305 (402)
                      +..|+.-||+||..|.+.|..|+.+||....-+  ..++||+.|++||+.|+.+....+..++.+
T Consensus        60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l  124 (232)
T KOG2483|consen   60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDL  124 (232)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence            347999999999999999999999999654322  268999999999999998777666555544

>PLN03217 transcription factor ATBS1; Provisional

Probab=97.75  E-value=5.8e-05  Score=63.37  Aligned_cols=57  Identities=28%  Similarity=0.530  Sum_probs=47.8

Q ss_pred             HHhHHHHHHHHHHHhccCCCC------CCCCChhhhHHHHHHHHHHHHHHHHHHHhhhhhcCCc
Q 015691          251 RVRREKISERMRLLQELVPGC------NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPE  308 (402)
Q Consensus       251 RrRRekIner~~~Lr~LVP~~------~K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~~~~~p~  308 (402)
                      |---+.|++-+..||.|+|..      .|. .-+-||+||..||+.|+++|..|++++..+-..
T Consensus        16 risddqi~dLvsKLq~llPe~r~~r~s~k~-saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t   78 (93)
T PLN03217         16 RISEDQINDLIIKLQQLLPELRDSRRSDKV-SAARVLQDTCNYIRNLHREVDDLSERLSELLAN   78 (93)
T ss_pred             CCCHHHHHHHHHHHHHHChHHHhhhccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            444588999999999999964      333 567789999999999999999999999887543

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=97.71  E-value=1.5e-05  Score=88.81  Aligned_cols=66  Identities=26%  Similarity=0.477  Sum_probs=57.5

Q ss_pred             CcCCccchhHHHhHHHHHHHHHHHhccCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 015691          241 QATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVN  306 (402)
Q Consensus       241 ~a~~~HslaERrRRekIner~~~Lr~LVP~~~K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~~~~~  306 (402)
                      ..+.+|+++|||-|.-||++|..|+++||+..-+..|..+|..||+||++|+..-+.+....+.+.
T Consensus       275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~  340 (953)
T KOG2588|consen  275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR  340 (953)
T ss_pred             cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence            457899999999999999999999999998765458999999999999999988887776655544

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=97.40  E-value=6.9e-05  Score=75.13  Aligned_cols=52  Identities=25%  Similarity=0.406  Sum_probs=45.7

Q ss_pred             ccchhHHHhHHHHHHHHHHHhccCCC--CCCCCChhhhHHHHHHHHHHHHHHHHH
Q 015691          245 SHSLAERVRREKISERMRLLQELVPG--CNKITGKAVMLDEIINYVQSLQQQVEF  297 (402)
Q Consensus       245 ~HslaERrRRekIner~~~Lr~LVP~--~~K~tdKAsIL~eAIdYIk~LQ~QVq~  297 (402)
                      .-+..||||=.-||-.|..||.|+|.  ..|+ .||.||+.+.+||.+|+.+.-.
T Consensus        63 IANsNERRRMQSINAGFqsLr~LlPr~eGEKL-SKAAILQQTa~yI~~Le~~Kt~  116 (373)
T KOG0561|consen   63 IANSNERRRMQSINAGFQSLRALLPRKEGEKL-SKAAILQQTADYIHQLEGHKTE  116 (373)
T ss_pred             hhcchHHHHHHhhhHHHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHHhcccc
Confidence            45778999999999999999999995  5676 9999999999999999866533

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=96.83  E-value=0.0027  Score=62.58  Aligned_cols=57  Identities=23%  Similarity=0.282  Sum_probs=46.5

Q ss_pred             cchhHHHhHHHHHHHHHHHhc-cCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHhhh
Q 015691          246 HSLAERVRREKISERMRLLQE-LVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKL  302 (402)
Q Consensus       246 HslaERrRRekIner~~~Lr~-LVP~~~K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~  302 (402)
                      --+.||||=.|+||-|.+|+. -+++-+.-.-|.-||-.||+||..||.-++++....
T Consensus       122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~  179 (284)
T KOG3960|consen  122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAE  179 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            457899999999999999975 345555434799999999999999998888776443

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=96.58  E-value=0.0021  Score=61.14  Aligned_cols=58  Identities=21%  Similarity=0.268  Sum_probs=49.0

Q ss_pred             ccchhHHHhHHHHHHHHHHHhccCCCC---CCCCChhhhHHHHHHHHHHHHHHHHHHHhhh
Q 015691          245 SHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEFLSMKL  302 (402)
Q Consensus       245 ~HslaERrRRekIner~~~Lr~LVP~~---~K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~  302 (402)
                      .++..||.|=+-+|..|..||.+||..   +|+..|..+|..||.||++|+.-++.-+..+
T Consensus       112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~  172 (228)
T KOG4029|consen  112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL  172 (228)
T ss_pred             hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence            466779999999999999999999942   3445999999999999999998777766544

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=94.92  E-value=0.027  Score=60.16  Aligned_cols=56  Identities=25%  Similarity=0.283  Sum_probs=46.8

Q ss_pred             CccchhHHHhHHHHHHHHHHHhccCCC---CCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 015691          244 NSHSLAERVRREKISERMRLLQELVPG---CNKITGKAVMLDEIINYVQSLQQQVEFLS  299 (402)
Q Consensus       244 ~~HslaERrRRekIner~~~Lr~LVP~---~~K~tdKAsIL~eAIdYIk~LQ~QVq~Le  299 (402)
                      ...+..||.|=..|||-|++|-.+.=-   ..|-.-|..||-.||.-|-.|++||.+-.
T Consensus       528 ~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN  586 (632)
T KOG3910|consen  528 MANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN  586 (632)
T ss_pred             hhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence            468999999999999999999887542   23333599999999999999999998754

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=88.33  E-value=0.25  Score=45.94  Aligned_cols=48  Identities=23%  Similarity=0.398  Sum_probs=41.2

Q ss_pred             CccchhHHHhHHHHHHHHHHHhccCCC--CCCCCChhhhHHHHHHHHHHHH
Q 015691          244 NSHSLAERVRREKISERMRLLQELVPG--CNKITGKAVMLDEIINYVQSLQ  292 (402)
Q Consensus       244 ~~HslaERrRRekIner~~~Lr~LVP~--~~K~tdKAsIL~eAIdYIk~LQ  292 (402)
                      --|++-||+|-.-+|+-|..||.++|.  .+|. .|.--|+-|-.||-+|=
T Consensus        80 v~anvrerqRtqsLn~AF~~lr~iiptlPsdkl-SkiqtLklA~ryidfl~  129 (173)
T KOG4447|consen   80 VMANVRERQRTQSLNEAFAALRKIIPTLPSDKL-SKIQTLKLAARYIDFLY  129 (173)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhcCCCCcccc-ccccchhhcccCCchhh
Confidence            369999999999999999999999996  4565 78778888888888774

>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]

Probab=84.36  E-value=0.82  Score=49.84  Aligned_cols=39  Identities=21%  Similarity=0.439  Sum_probs=34.6

Q ss_pred             HHHhHHHHHHHHHHHhccCCC----CCCCCChhhhHHHHHHHHH
Q 015691          250 ERVRREKISERMRLLQELVPG----CNKITGKAVMLDEIINYVQ  289 (402)
Q Consensus       250 ERrRRekIner~~~Lr~LVP~----~~K~tdKAsIL~eAIdYIk  289 (402)
                      -+|-|+|+|-.+..|.+|+|-    .+|+ ||.+||.-++-|++
T Consensus        33 SKRHRdRLNaELD~lAsLLPfpqdiisKL-DkLSVLRLSVSyLr   75 (712)
T KOG3560|consen   33 SKRHRDRLNAELDHLASLLPFPQDIISKL-DKLSVLRLSVSYLR   75 (712)
T ss_pred             chhHHHHhhhHHHHHHHhcCCCHHHHhhh-hhhhhhhhhHHHHH
Confidence            467799999999999999994    5787 99999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	402
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	2e-17
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	5e-09
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	5e-07
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	5e-07
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 75.9 bits (187), Expect = 2e-17
 Identities = 17/73 (23%), Positives = 39/73 (53%)

Query: 238 KRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEF 297
            RG+   +H+  E+  R  I++++  L++LV G      K+ +L + I+Y++ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 298 LSMKLATVNPELN 310
           L  +  ++   ++
Sbjct: 62  LKQENLSLRTAVH 74

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 245 SHSLAERVRREKISERMRLLQELVPGCNKITG-----KAVMLDEIINYVQSLQQQVE 296
            H+  ER RR+KI+  +  L +++P  +  +      K  +L +  +Y+Q L+Q   
Sbjct: 8   QHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 245 SHSLAERVRREKISERMRLLQELVPGCN--KITGKAVMLDEIINYVQSLQQQ 294
            H+  ER RR+ I +    L++ VP     K + +A +LD+   Y+Q ++++
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKAS-RAQILDKATEYIQYMRRK 55

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 234 HMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCN---KITGKAVMLDEIINYVQS 290
           HM  KR     +H++ ER RR ++      L++ +P      K   K V+L +   Y+ S
Sbjct: 2   HMNVKR----RTHNVLERQRRNELKRSFFALRDQIPELENNEKAP-KVVILKKATAYILS 56

Query: 291 LQQQVEFLS---MKLATVNPELNLDIERI 316
           +Q + + L      L     +L   +E++
Sbjct: 57  VQAEEQKLISEEDLLRKRREQLKHKLEQL 85

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 45.8 bits (109), Expect = 7e-07
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 245 SHSLAERVRREKISERMRLLQELVPGCNKI-TGKAVMLDEIINYVQSLQQQVEFLSMKL 302
            H+  ER RR+ I +    L++ VP        +A +LD+   Y+Q ++++       +
Sbjct: 15  HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 73

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 62/235 (26%)

Query: 172 TDKNVEVELQKDPSGDSS-----GILKEQDEK------KQKIEQNTGANMRGKQAAKPTK 220
           + + ++  +       S        L  + E+      ++ +  N    M         +
Sbjct: 47  SKEEID-HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM--SPIKTEQR 103

Query: 221 DSSLSGEAPKEYIHMRAKRGQATNSHSLAER--VRREKISERMRLLQELVP--------- 269
             S+     + YI  R +     ++   A+    R +   +  + L EL P         
Sbjct: 104 QPSMM---TRMYIEQRDR--LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 270 -GCNKITGKAVMLDEIINYVQSLQQQVEFLS----MKLATVN-PELNLDIERILSKDI-- 321
            G     GK  +    ++   S + Q +       + L   N PE  L++ + L   I  
Sbjct: 159 LGS----GKTWV---ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 322 -LHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGANPQFPPLPQS--VLDH 373
              +RS  ++ I     ++S +     + +              P      VL +
Sbjct: 212 NWTSRSDHSSNI--KLRIHSIQAELRRLLKS------------KPYENCLLVLLN 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	402
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.65
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.64
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.53
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.53
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.52
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.49
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.48
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.48
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.44
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.33
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.29
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	98.94
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.92
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.87
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.8
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.63
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.39
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	97.69

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.65  E-value=5.3e-17  Score=131.11  Aligned_cols=64  Identities=23%  Similarity=0.380  Sum_probs=58.5

Q ss_pred             CCccchhHHHhHHHHHHHHHHHhccCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 015691          243 TNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVN  306 (402)
Q Consensus       243 ~~~HslaERrRRekIner~~~Lr~LVP~~~K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~~~~~  306 (402)
                      +.+|+++||+||++||++|..|++|||+++.+.+|++||++||+||++||.+++.|+.++..+.
T Consensus         7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~   70 (82)
T 1am9_A            7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4589999999999999999999999999844459999999999999999999999999887664

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.64  E-value=2.2e-16  Score=135.54  Aligned_cols=70  Identities=29%  Similarity=0.405  Sum_probs=51.0

Q ss_pred             cccccccCCCcCCccchhHHHhHHHHHHHHHHHhccCCCCCC---CCChhhhHHHHHHHHHHHHHHHHHHHhh
Q 015691          232 YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNK---ITGKAVMLDEIINYVQSLQQQVEFLSMK  301 (402)
Q Consensus       232 ~~~~RakR~~a~~~HslaERrRRekIner~~~Lr~LVP~~~K---~tdKAsIL~eAIdYIk~LQ~QVq~Le~~  301 (402)
                      ..+.++++.+.+.+|+++||+||++||++|..|++|||.|.+   +.+|++||++||+||++||.+++.|+..
T Consensus        17 ~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~   89 (118)
T 4ati_A           17 EARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL   89 (118)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667777888899999999999999999999999999863   2489999999999999999999999864

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.53  E-value=1.2e-15  Score=118.13  Aligned_cols=54  Identities=30%  Similarity=0.441  Sum_probs=48.0

Q ss_pred             CCccchhHHHhHHHHHHHHHHHhccCCCCCCC------CChhhhHHHHHHHHHHHHHHHH
Q 015691          243 TNSHSLAERVRREKISERMRLLQELVPGCNKI------TGKAVMLDEIINYVQSLQQQVE  296 (402)
Q Consensus       243 ~~~HslaERrRRekIner~~~Lr~LVP~~~K~------tdKAsIL~eAIdYIk~LQ~QVq  296 (402)
                      +++|+++||+||++||..|..|+.|||.|.+.      .+||+||+.||+||+.||++|+
T Consensus         3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            36899999999999999999999999977432      3699999999999999998764

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.53  E-value=2.5e-15  Score=115.69  Aligned_cols=55  Identities=27%  Similarity=0.432  Sum_probs=49.2

Q ss_pred             cCCccchhHHHhHHHHHHHHHHHhccCCCCCC-----CCChhhhHHHHHHHHHHHHHHHH
Q 015691          242 ATNSHSLAERVRREKISERMRLLQELVPGCNK-----ITGKAVMLDEIINYVQSLQQQVE  296 (402)
Q Consensus       242 a~~~HslaERrRRekIner~~~Lr~LVP~~~K-----~tdKAsIL~eAIdYIk~LQ~QVq  296 (402)
                      .+..|+++||+||++||+.|..|++|||.|..     ..+|++||++||+||++||++++
T Consensus         5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~   64 (65)
T 1an4_A            5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH   64 (65)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            45689999999999999999999999999872     24999999999999999998753

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.52  E-value=4.9e-15  Score=117.72  Aligned_cols=57  Identities=19%  Similarity=0.415  Sum_probs=51.2

Q ss_pred             CCccchhHHHhHHHHHHHHHHHhccCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 015691          243 TNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLS  299 (402)
Q Consensus       243 ~~~HslaERrRRekIner~~~Lr~LVP~~~K~tdKAsIL~eAIdYIk~LQ~QVq~Le  299 (402)
                      +.+|+++||+||++||++|..|++|||++..+.||++||+.||+||+.||.++.-|+
T Consensus         9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~   65 (71)
T 4h10_B            9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE   65 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence            458999999999999999999999999865334999999999999999999987765

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.49  E-value=3.1e-15  Score=119.19  Aligned_cols=53  Identities=30%  Similarity=0.504  Sum_probs=47.7

Q ss_pred             CCcCCccchhHHHhHHHHHHHHHHHhccCCCC----CCCCChhhhHHHHHHHHHHHHH
Q 015691          240 GQATNSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQQ  293 (402)
Q Consensus       240 ~~a~~~HslaERrRRekIner~~~Lr~LVP~~----~K~tdKAsIL~eAIdYIk~LQ~  293 (402)
                      .+++.+|+++||+||++||+.|..|+.|||.|    .|+ |||+||+.||+||+.|+.
T Consensus         7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A            7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence            34456899999999999999999999999988    575 999999999999999974

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.48  E-value=2.3e-14  Score=115.12  Aligned_cols=62  Identities=24%  Similarity=0.448  Sum_probs=56.8

Q ss_pred             CccchhHHHhHHHHHHHHHHHhccCCCC--CCCCChhhhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 015691          244 NSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVN  306 (402)
Q Consensus       244 ~~HslaERrRRekIner~~~Lr~LVP~~--~K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~~~~~  306 (402)
                      ..|+..||+||++||+.|..|+++||.+  .|+ +|++||..||+||+.|+.+++.|+.+++.+.
T Consensus         4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~   67 (83)
T 1nkp_B            4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDLK   67 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999985  665 9999999999999999999999998877653

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.48  E-value=2.7e-14  Score=114.29  Aligned_cols=61  Identities=25%  Similarity=0.451  Sum_probs=56.9

Q ss_pred             CccchhHHHhHHHHHHHHHHHhccCCCC--CCCCChhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 015691          244 NSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATV  305 (402)
Q Consensus       244 ~~HslaERrRRekIner~~~Lr~LVP~~--~K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~~~~  305 (402)
                      ..|+..||+||.+||+.|..|++|||.+  .|+ +|++||..||+||+.|+.+++.|+.+++.+
T Consensus        14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L   76 (80)
T 1hlo_A           14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDL   76 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999987  465 999999999999999999999999988765

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.44  E-value=1.1e-13  Score=113.41  Aligned_cols=60  Identities=25%  Similarity=0.387  Sum_probs=54.6

Q ss_pred             CccchhHHHhHHHHHHHHHHHhccCCCC---CCCCChhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 015691          244 NSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEFLSMKLAT  304 (402)
Q Consensus       244 ~~HslaERrRRekIner~~~Lr~LVP~~---~K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~~~  304 (402)
                      ..|+..||+||+.||++|..|+++||.+   .|+ +|++||.+||+||++|+.+.+.|..+++.
T Consensus         8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~-sK~~iL~~A~~YI~~L~~~~~~l~~~~~~   70 (88)
T 1nkp_A            8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKA-PKVVILKKATAYILSVQAEEQKLISEEDL   70 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999986   465 99999999999999999999998877654

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.33  E-value=4.3e-13  Score=107.53  Aligned_cols=56  Identities=29%  Similarity=0.379  Sum_probs=48.6

Q ss_pred             CccchhHHHhHHHHHHHHHHHhccCCCC---CCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 015691          244 NSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEFLS  299 (402)
Q Consensus       244 ~~HslaERrRRekIner~~~Lr~LVP~~---~K~tdKAsIL~eAIdYIk~LQ~QVq~Le  299 (402)
                      ..|+..||+||+.||+.|..|+.+||.+   .|...|+.||..||+||++||++|++++
T Consensus         7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~   65 (76)
T 3u5v_A            7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN   65 (76)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4799999999999999999999999953   3432688999999999999999999875

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.29  E-value=3.9e-12  Score=102.62  Aligned_cols=61  Identities=16%  Similarity=0.220  Sum_probs=55.1

Q ss_pred             CccchhHHHhHHHHHHHHHHHhccCCCC---CCCCChhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 015691          244 NSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATV  305 (402)
Q Consensus       244 ~~HslaERrRRekIner~~~Lr~LVP~~---~K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~~~~  305 (402)
                      ..|+..||+||..||+.|..|+++||.+   .|. .|++||.+||+||+.|+.+.+.|..+.+.+
T Consensus         3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~-sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L   66 (80)
T 1nlw_A            3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRH-TTLSLLTKAKLHIKKLEDSDRKAVHQIDQL   66 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3799999999999999999999999965   454 899999999999999999999999877654

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=98.94  E-value=2.3e-10  Score=90.01  Aligned_cols=52  Identities=23%  Similarity=0.413  Sum_probs=46.7

Q ss_pred             CccchhHHHhHHHHHHHHHHHhccCCCC--CCCCChhhhHHHHHHHHHHHHHHHH
Q 015691          244 NSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVE  296 (402)
Q Consensus       244 ~~HslaERrRRekIner~~~Lr~LVP~~--~K~tdKAsIL~eAIdYIk~LQ~QVq  296 (402)
                      ..|+..||+|+..||+.|..|+++||..  .|+ +|+.||..||+||++|++.++
T Consensus        14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~Kl-SKi~tLr~Ai~YI~~L~~~L~   67 (68)
T 1mdy_A           14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRL-PKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCC-CHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHHHHHHHHHHHc
Confidence            4699999999999999999999999964  454 899999999999999998653

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.92  E-value=7.6e-10  Score=107.50  Aligned_cols=53  Identities=19%  Similarity=0.422  Sum_probs=41.8

Q ss_pred             cCCccchhHHHhHHHHHHHHHHHhccCC-CCCCCCChhhhHHHHHHHHHHHHHHH
Q 015691          242 ATNSHSLAERVRREKISERMRLLQELVP-GCNKITGKAVMLDEIINYVQSLQQQV  295 (402)
Q Consensus       242 a~~~HslaERrRRekIner~~~Lr~LVP-~~~K~tdKAsIL~eAIdYIk~LQ~QV  295 (402)
                      .+.+|+++||+||++||+.|..|+.||| ...|+ ||++||..||+|||.|+...
T Consensus        12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~-dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A           12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCc-CHHHHHHHHHHHHHHHHhhc
Confidence            3458999999999999999999999999 44565 99999999999999998643

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.87  E-value=2e-09  Score=82.66  Aligned_cols=52  Identities=21%  Similarity=0.277  Sum_probs=46.1

Q ss_pred             ccchhHHHhHHHHHHHHHHHhccCCCCC--CCCChhhhHHHHHHHHHHHHHHHH
Q 015691          245 SHSLAERVRREKISERMRLLQELVPGCN--KITGKAVMLDEIINYVQSLQQQVE  296 (402)
Q Consensus       245 ~HslaERrRRekIner~~~Lr~LVP~~~--K~tdKAsIL~eAIdYIk~LQ~QVq  296 (402)
                      .|+..||+|+..||+.|..||.+||...  ++..|..+|..||+||+.|++.++
T Consensus         5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            5889999999999999999999999653  334999999999999999998764

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.80  E-value=1.5e-09  Score=106.79  Aligned_cols=53  Identities=28%  Similarity=0.423  Sum_probs=47.4

Q ss_pred             CcCCccchhHHHhHHHHHHHHHHHhccCC----CCCCCCChhhhHHHHHHHHHHHHHH
Q 015691          241 QATNSHSLAERVRREKISERMRLLQELVP----GCNKITGKAVMLDEIINYVQSLQQQ  294 (402)
Q Consensus       241 ~a~~~HslaERrRRekIner~~~Lr~LVP----~~~K~tdKAsIL~eAIdYIk~LQ~Q  294 (402)
                      +++.+|+.+||+||+|||+.|..|+.|||    ...|+ ||++||..||+|||.|+..
T Consensus        12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B           12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHCC
T ss_pred             hhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhcc
Confidence            34568999999999999999999999999    45676 9999999999999999843

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.63  E-value=3.2e-08  Score=80.86  Aligned_cols=48  Identities=25%  Similarity=0.443  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHHhccCCCCC----CCCChhhhHHHHHHHHHHHHHHHHHHHhh
Q 015691          253 RREKISERMRLLQELVPGCN----KITGKAVMLDEIINYVQSLQQQVEFLSMK  301 (402)
Q Consensus       253 RRekIner~~~Lr~LVP~~~----K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~  301 (402)
                      -|..||++|..|..|||.+.    |. +|++||..+|+||++||++++.+.+.
T Consensus         3 ~R~nIN~~I~EL~~LiP~~~~~~~k~-nKg~IL~ksvdYI~~Lq~e~~r~~e~   54 (83)
T 4ath_A            3 MRFNINDRIKELGTLIPKSNDPDMRW-NKGTILKASVDYIRKLQREQQRAKDL   54 (83)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCTTCCC-SHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             chhhHHHhhhhhhccCCCCCCcccCc-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999874    44 89999999999999999888777643

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.39  E-value=1.1e-07  Score=75.15  Aligned_cols=46  Identities=24%  Similarity=0.437  Sum_probs=40.7

Q ss_pred             chhHHHhHHHHHHHHHHHhccCCCC---CCCCChhhhHHHHHHHHHHHHH
Q 015691          247 SLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQ  293 (402)
Q Consensus       247 slaERrRRekIner~~~Lr~LVP~~---~K~tdKAsIL~eAIdYIk~LQ~  293 (402)
                      +..||+|+..||+.|..||.+||..   .|+ +|..+|..||+||..||.
T Consensus        19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKL-SKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQL-SQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCC-CHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCc-cHHHHHHHHHHHHHHHHc
Confidence            3458999999999999999999965   454 899999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=97.69  E-value=6.3e-05  Score=63.05  Aligned_cols=49  Identities=27%  Similarity=0.358  Sum_probs=41.4

Q ss_pred             HHHhHHHHHHHHHHHhccCCCC--CCCCChhhhHHHHHHHHHHHHHHHHHH
Q 015691          250 ERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEFL  298 (402)
Q Consensus       250 ERrRRekIner~~~Lr~LVP~~--~K~tdKAsIL~eAIdYIk~LQ~QVq~L  298 (402)
                      ||.|=..||+.|..||.+||..  +++..|..+|.-||+||+.|+..++.-
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~   83 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSH   83 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            5778888999999999999964  333489999999999999999877643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	402
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	2e-15
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	4e-15
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	7e-15
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	2e-13
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	9e-13
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	7e-12
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	3e-11
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	9e-11

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (168), Expect = 2e-15
 Identities = 17/73 (23%), Positives = 39/73 (53%)

Query: 238 KRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEF 297
            RG+   +H+  E+  R  I++++  L++LV G      K+ +L + I+Y++ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 298 LSMKLATVNPELN 310
           L  +  ++   ++
Sbjct: 62  LKQENLSLRTAVH 74

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (164), Expect = 4e-15
 Identities = 14/57 (24%), Positives = 29/57 (50%)

Query: 254 REKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELN 310
           R  I++++  L++LV G +    K+ +L + I+Y++ LQQ    L  +   +     
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQ 57

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (164), Expect = 7e-15
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 234 HMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSL 291
           HM  KR     +H++ ER RR ++      L++ +P    N+   K V+L +   Y+ S+
Sbjct: 2   HMNVKR----RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSV 57

Query: 292 QQQVEFLSMKLATVNPELNLDIERI 316
           Q + + L  +   +         ++
Sbjct: 58  QAEEQKLISEEDLLRKRREQLKHKL 82

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.6 bits (152), Expect = 2e-13
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 235 MRAKRGQAT----NSHSLAERVRREKISERMRLLQELVPGC-NKITGKAVMLDEIINYVQ 289
           M  KR         + ++ ER R  K++E    L+       N+   K  +L   I Y++
Sbjct: 1   MELKRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIE 60

Query: 290 SLQQQVE 296
            LQ  + 
Sbjct: 61  GLQALLR 67

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.7 bits (147), Expect = 9e-13
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 245 SHSLAERVRREKISERMRLLQELVPGCNKITG------KAVMLDEIINYVQSLQQQVE 296
           SH  AE+ RR +++  +  L  L+P   K         KA  ++    Y++ LQQ   
Sbjct: 5   SHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (142), Expect = 7e-12
 Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 245 SHSLAERVRREKISERMRLLQELVPGC-NKITGKAVMLDEIINYVQSLQQQVEFLSMKLA 303
            H+  ER RR+ I +    L++ VP    +   +A +LD+   Y+Q ++++       + 
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 64

Query: 304 TVNPELNLDIERI 316
            +  +  L  +++
Sbjct: 65  DLKRQNALLEQQV 77

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (137), Expect = 3e-11
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 244 NSHSLAERVRREKISERMRLLQELVPGCNKITG-----KAVMLDEIINYVQSLQQQVE 296
             H+  ER RR+KI+  +  L +++P  +  +      K  +L +  +Y+Q L+Q   
Sbjct: 7   AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 9e-11
 Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 245 SHSLAERVRREKISERMRLLQELVPGCNKI--TGKAVMLDEIINYVQSLQQQVEFLSMKL 302
           +H+  E+ RR  +   +  L+ LVP            +L +   +++ L+        ++
Sbjct: 4   THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63

Query: 303 ATVNPE 308
             +  E
Sbjct: 64  DQLQRE 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	402
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.46
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.43
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.43
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.37

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.7e-16  Score=121.71  Aligned_cols=64  Identities=23%  Similarity=0.380  Sum_probs=58.6

Q ss_pred             CCccchhHHHhHHHHHHHHHHHhccCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 015691          243 TNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVN  306 (402)
Q Consensus       243 ~~~HslaERrRRekIner~~~Lr~LVP~~~K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~~~~~  306 (402)
                      +..|+.+||+||++||+.|..|++|||++...++|++||..||+||+.|+.+++.|.++...+.
T Consensus         7 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk   70 (80)
T d1am9a_           7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3579999999999999999999999999875569999999999999999999999998887653

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.2e-14  Score=112.27  Aligned_cols=62  Identities=16%  Similarity=0.221  Sum_probs=56.4

Q ss_pred             CccchhHHHhHHHHHHHHHHHhccCCCCC---CCCChhhhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 015691          244 NSHSLAERVRREKISERMRLLQELVPGCN---KITGKAVMLDEIINYVQSLQQQVEFLSMKLATVN  306 (402)
Q Consensus       244 ~~HslaERrRRekIner~~~Lr~LVP~~~---K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~~~~~  306 (402)
                      ..|+.+||+||++||+.|..|++|||.+.   | .+|++||.+||+||+.|+.+++.|..++..+.
T Consensus         3 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k-~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L~   67 (79)
T d1nlwa_           3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSR-HTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ   67 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999763   5 48999999999999999999999998887654

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=1.7e-14  Score=109.12  Aligned_cols=51  Identities=29%  Similarity=0.459  Sum_probs=46.6

Q ss_pred             CccchhHHHhHHHHHHHHHHHhccCCCC-------CCCCChhhhHHHHHHHHHHHHHHH
Q 015691          244 NSHSLAERVRREKISERMRLLQELVPGC-------NKITGKAVMLDEIINYVQSLQQQV  295 (402)
Q Consensus       244 ~~HslaERrRRekIner~~~Lr~LVP~~-------~K~tdKAsIL~eAIdYIk~LQ~QV  295 (402)
                      ..|+++||+||++||+.|..|++|||++       .|+ +|+.||+.||+||++||++|
T Consensus         4 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~-sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAP-SKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCS-CTTHHHHHHHHHHHHHHTCS
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccc-cHHHHHHHHHHHHHHHHHhh
Confidence            4799999999999999999999999953       454 99999999999999999876

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.1e-14  Score=112.05  Aligned_cols=53  Identities=23%  Similarity=0.347  Sum_probs=47.9

Q ss_pred             CccchhHHHhHHHHHHHHHHHhccCCCCC-CCCChhhhHHHHHHHHHHHHHHHH
Q 015691          244 NSHSLAERVRREKISERMRLLQELVPGCN-KITGKAVMLDEIINYVQSLQQQVE  296 (402)
Q Consensus       244 ~~HslaERrRRekIner~~~Lr~LVP~~~-K~tdKAsIL~eAIdYIk~LQ~QVq  296 (402)
                      ..|+..||+||++||+.|..|++|||.+. +..+|++||+.||+||++||++|+
T Consensus        14 ~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            47999999999999999999999999874 234999999999999999998775

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.5e-14  Score=107.82  Aligned_cols=53  Identities=26%  Similarity=0.370  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHhccCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 015691          254 REKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVN  306 (402)
Q Consensus       254 RekIner~~~Lr~LVP~~~K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~~~~~  306 (402)
                      |++||++|..|++|||+|.++++|++||.+||+||++||.+++.|++++..+.
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~   53 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLK   53 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999875569999999999999999999999999887654

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.6e-14  Score=111.51  Aligned_cols=62  Identities=24%  Similarity=0.386  Sum_probs=56.3

Q ss_pred             CccchhHHHhHHHHHHHHHHHhccCCCC---CCCCChhhhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 015691          244 NSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVN  306 (402)
Q Consensus       244 ~~HslaERrRRekIner~~~Lr~LVP~~---~K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~~~~~  306 (402)
                      ..|+.+||+||++||+.|..|++|||++   .|+ +|++||..||+||++|+.+++.|..+++.+.
T Consensus         8 ~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~-sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~   72 (88)
T d1nkpa_           8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKA-PKVVILKKATAYILSVQAEEQKLISEEDLLR   72 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999975   354 8999999999999999999999998887654

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8e-14  Score=109.94  Aligned_cols=61  Identities=25%  Similarity=0.458  Sum_probs=55.5

Q ss_pred             CccchhHHHhHHHHHHHHHHHhccCCCC--CCCCChhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 015691          244 NSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATV  305 (402)
Q Consensus       244 ~~HslaERrRRekIner~~~Lr~LVP~~--~K~tdKAsIL~eAIdYIk~LQ~QVq~Le~~~~~~  305 (402)
                      ..|+.+||+||++||+.|..|++|||++  .| .+|++||..||+||+.|+.+++.|..++..+
T Consensus         4 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k-~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l   66 (83)
T d1nkpb_           4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDL   66 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999975  45 5999999999999999999999999877654

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.1e-13  Score=105.22  Aligned_cols=52  Identities=29%  Similarity=0.477  Sum_probs=46.8

Q ss_pred             CCccchhHHHhHHHHHHHHHHHhccCCCCC------CCCChhhhHHHHHHHHHHHHHHH
Q 015691          243 TNSHSLAERVRREKISERMRLLQELVPGCN------KITGKAVMLDEIINYVQSLQQQV  295 (402)
Q Consensus       243 ~~~HslaERrRRekIner~~~Lr~LVP~~~------K~tdKAsIL~eAIdYIk~LQ~QV  295 (402)
                      +..|+.+||+||++||+.|..|++|||.+.      |+ +|++||..||+||+.||++.
T Consensus         6 R~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~-sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQ-SKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCC-CTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCC-CHHHHHHHHHHHHHHHHHhh
Confidence            357999999999999999999999999764      54 89999999999999999754