Citrus Sinensis ID: 015699

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400--
MLKQILSKLPRKSPKSDQLDEINSGSNNSNFSNGSQCTNGGNGLSSRLSVVKRVSSAVFPSSIMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYFLFIMCMLINKRVG
cHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccc
cHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccEHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccc
MLKQIlsklprkspksdqldeinsgsnnsnfsngsqctnggnglsSRLSVVKRVssavfpssimagveavephlsfkdvsntqkQNLFVSKLnlccevsdfsdsdkvtaEQDLKRQTLIELADfvssgsakftepaiSGMCKmcslnlfrvfppkcrsngtggetedeepmfdpawSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLdlfdsedprerDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIisgfalplkeEHKIFLCRaliplhkpksvgiyhqQLTYCVVQFIDKDPKLATNAIKGLLkywpvtnsqKELMFISELEEVLEMTSMAEFQKIMVPLFRrigcclnsshYQVYFLFIMCMLINKRVG
mlkqilsklprkspksdqldeinsgsnnsnfsngsqCTNGGNGLSSRLSVVKRVSSAVFPSSIMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIEladfvssgsakFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRlldlfdsedprerDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYFLFIMCMLINKRVG
MLKQILSKLPRKSPKSDQLDEInsgsnnsnfsngsQCTNGGNGlssrlsvvkrvssavFPSSIMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYFLFIMCMLINKRVG
**************************************************VKRVSSAVFPSSIMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFS**********LKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKC***************FDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYFLFIMCMLIN****
MLKQI**************************************************************************SNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYFLFIMCMLINKRV*
MLKQILSK************EINSGSNNSNFSNGSQCTNGGNGLSSRLSVVKRVSSAVFPSSIMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRSN**********PMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYFLFIMCMLINKRVG
********************************************************************AVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPK******GGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYFLFIMCMLINKR**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLKQILSKLPRKSPKSDQLDEINSGSNNSNFSNGSQCTNGGNGLSSRLSVVKRVSSAVFPSSIMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYFLFIMCMLINKRVG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query402 2.2.26 [Sep-21-2011]
Q93YV6 500 Serine/threonine protein yes no 0.952 0.766 0.666 1e-149
Q8LF36492 Serine/threonine protein no no 0.878 0.717 0.581 1e-121
Q8RW96 522 Serine/threonine protein no no 0.945 0.727 0.538 1e-121
Q9LU89510 Serine/threonine protein no no 0.962 0.758 0.539 1e-121
Q9LVE2 546 Serine/threonine protein no no 0.952 0.701 0.529 1e-119
O04375495 Serine/threonine protein no no 0.942 0.765 0.517 1e-112
O04376499 Serine/threonine protein no no 0.957 0.771 0.533 1e-111
Q9ZQY6477 Serine/threonine protein no no 0.925 0.779 0.517 1e-106
Q9SV41497 Serine/threonine protein no no 0.773 0.625 0.536 2e-96
Q28651 524 Serine/threonine-protein yes no 0.781 0.599 0.507 2e-94
>sp|Q93YV6|2A5I_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform OS=Arabidopsis thaliana GN=B'IOTA PE=2 SV=1 Back     alignment and function desciption
 Score =  527 bits (1358), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 258/387 (66%), Positives = 313/387 (80%), Gaps = 4/387 (1%)

Query: 1   MLKQILSKLPRKSPKSDQLDEINSGSNNSNFSNGSQCTNGGNGLSSRLSVVKRVSSAVFP 60
           M KQ LSKLPRKS KSD  +   S S   +       T+GG     R +  KR+SSAVFP
Sbjct: 1   MFKQFLSKLPRKSSKSDSGELNRSSSGPVSSPVQRSGTSGGGSGPVRSNSGKRMSSAVFP 60

Query: 61  SSIMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIE 120
           +S++AG+E + P   FKDV +++K NLFVSK++LCC   DFSD  K + E+D+KRQTL+E
Sbjct: 61  ASVVAGIEPLVP---FKDVPSSEKLNLFVSKVSLCCVTFDFSDPGKNSIEKDVKRQTLLE 117

Query: 121 LADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQ 180
           L DFV+SGS KFTEPAI  MC+MC++NLFRVFPP  RS+ +GGE +D+EPMFDPAW HLQ
Sbjct: 118 LLDFVASGSVKFTEPAILAMCRMCAVNLFRVFPPNYRSS-SGGENDDDEPMFDPAWPHLQ 176

Query: 181 IVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMA 240
           IVYDLLL+F++   LD KVAKKY+DH FIVRLLDLFDSEDPRER+CLKT+LHR+YGKFM 
Sbjct: 177 IVYDLLLKFITSPCLDAKVAKKYLDHAFIVRLLDLFDSEDPRERECLKTILHRVYGKFMV 236

Query: 241 HRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLH 300
           HR F+R+++ NI YRFVFETE+H+GIAELLEIFGSI+SGFALPLKEEHKIFL R LIPLH
Sbjct: 237 HRPFVRKSMSNIFYRFVFETEKHSGIAELLEIFGSIVSGFALPLKEEHKIFLWRVLIPLH 296

Query: 301 KPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMT 360
           KPKSVG Y QQL+YC+ QFIDK+PKL +  IKGLLK+WP+TNSQKE+MF+ E+EE++E  
Sbjct: 297 KPKSVGNYFQQLSYCITQFIDKEPKLGSVVIKGLLKFWPITNSQKEVMFLGEVEEIVEAM 356

Query: 361 SMAEFQKIMVPLFRRIGCCLNSSHYQV 387
           S+ EFQKIMVPLF RI CC+ SSH+QV
Sbjct: 357 SVMEFQKIMVPLFLRIACCVTSSHFQV 383
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8LF36|2A5T_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform OS=Arabidopsis thaliana GN=B'THETA PE=2 SV=2 Back     alignment and function description
>sp|Q8RW96|2A5G_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform OS=Arabidopsis thaliana GN=B'GAMMA PE=1 SV=2 Back     alignment and function description
>sp|Q9LU89|2A5N_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1 Back     alignment and function description
>sp|Q9LVE2|2A5Z_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform OS=Arabidopsis thaliana GN=B'ZETA PE=2 SV=2 Back     alignment and function description
>sp|O04375|2A5A_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform OS=Arabidopsis thaliana GN=B'ALPHA PE=1 SV=1 Back     alignment and function description
>sp|O04376|2A5B_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform OS=Arabidopsis thaliana GN=B'BETA PE=1 SV=1 Back     alignment and function description
>sp|Q9ZQY6|2A5D_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform OS=Arabidopsis thaliana GN=B'DELTA PE=1 SV=1 Back     alignment and function description
>sp|Q9SV41|2A5E_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform OS=Arabidopsis thaliana GN=B'EPSILON PE=2 SV=1 Back     alignment and function description
>sp|Q28651|2A5G_RABIT Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform OS=Oryctolagus cuniculus GN=PPP2R5C PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query402
255549014 543 protein phosphatase 2a, regulatory subun 0.955 0.707 0.820 0.0
356511615 515 PREDICTED: serine/threonine protein phos 0.962 0.751 0.796 0.0
224143455497 predicted protein [Populus trichocarpa] 0.955 0.772 0.811 0.0
356563081 514 PREDICTED: serine/threonine protein phos 0.962 0.752 0.788 0.0
297738882 534 unnamed protein product [Vitis vinifera] 0.945 0.711 0.796 0.0
359484379 540 PREDICTED: serine/threonine protein phos 0.945 0.703 0.796 1e-180
357477821 510 Serine/threonine protein phosphatase 2A 0.960 0.756 0.781 1e-179
388499342 510 unknown [Medicago truncatula] 0.960 0.756 0.781 1e-179
449443131500 PREDICTED: serine/threonine protein phos 0.947 0.762 0.766 1e-174
449509474500 PREDICTED: serine/threonine protein phos 0.947 0.762 0.763 1e-174
>gi|255549014|ref|XP_002515563.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] gi|223545507|gb|EEF47012.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/389 (82%), Positives = 346/389 (88%), Gaps = 5/389 (1%)

Query: 1   MLKQILSKLPRKSPKSDQLDE--INSGSNNSNFSNGSQCTNGGNGLSSRLSVVKRVSSAV 58
           MLKQILSK+PRKS KS+  D   I SG+N+SN+ NG  CTNGGN  SSRL+VVKRVSSAV
Sbjct: 41  MLKQILSKIPRKSSKSESFDSAGIESGNNSSNWGNGVPCTNGGNSFSSRLNVVKRVSSAV 100

Query: 59  FPSSIMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTL 118
           FP+SIMAGVEAVEPHLSFKDVSN QKQ+LF+SKLN CCE SDFSD DK  A+QDLK QTL
Sbjct: 101 FPASIMAGVEAVEPHLSFKDVSNVQKQSLFISKLNFCCE-SDFSDPDKNAAQQDLKGQTL 159

Query: 119 IELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSH 178
           IEL DFVSSG AKF EPA++ MCK+C++NLFRVFPPK RS  T GETEDEEPMFDP WSH
Sbjct: 160 IELVDFVSSGGAKFNEPAMAAMCKLCAINLFRVFPPKYRSANTAGETEDEEPMFDPDWSH 219

Query: 179 LQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKF 238
           LQ VYDLLLRF+S  + D K AKKYVDH FI+RLLDLFDSEDPRERDCLKT+LHRIYGKF
Sbjct: 220 LQCVYDLLLRFIS--AADPKAAKKYVDHAFIMRLLDLFDSEDPRERDCLKTILHRIYGKF 277

Query: 239 MAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIP 298
           M HR +IR+AV NIIY F+FETERHNGIAELLEIFGS+ISGFALPLKEEHK+FL RALIP
Sbjct: 278 MVHRPYIRKAVSNIIYNFIFETERHNGIAELLEIFGSVISGFALPLKEEHKMFLWRALIP 337

Query: 299 LHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLE 358
           LHKPKSVGIYHQQLTYCVVQFIDKDPKLA+  IKGLLKYWPVTNSQKELMFISELEE+LE
Sbjct: 338 LHKPKSVGIYHQQLTYCVVQFIDKDPKLASTVIKGLLKYWPVTNSQKELMFISELEEILE 397

Query: 359 MTSMAEFQKIMVPLFRRIGCCLNSSHYQV 387
           MTSM EFQKIM+PLFRRIGCCLNSSHYQV
Sbjct: 398 MTSMDEFQKIMIPLFRRIGCCLNSSHYQV 426

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356511615|ref|XP_003524519.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform-like [Glycine max] Back     alignment and taxonomy information
>gi|224143455|ref|XP_002324961.1| predicted protein [Populus trichocarpa] gi|222866395|gb|EEF03526.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356563081|ref|XP_003549794.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform-like isoform 1 [Glycine max] gi|356563083|ref|XP_003549795.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|297738882|emb|CBI28127.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359484379|ref|XP_002284853.2| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Vitis vinifera] Back     alignment and taxonomy information
>gi|357477821|ref|XP_003609196.1| Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Medicago truncatula] gi|355510251|gb|AES91393.1| Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Medicago truncatula] Back     alignment and taxonomy information
>gi|388499342|gb|AFK37737.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449443131|ref|XP_004139334.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449509474|ref|XP_004163599.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query402
TAIR|locus:2179499 500 AT5G25510 [Arabidopsis thalian 0.952 0.766 0.643 1.2e-134
TAIR|locus:2009912492 AT1G13460 [Arabidopsis thalian 0.952 0.778 0.552 9.7e-112
TAIR|locus:2089905 546 AT3G21650 [Arabidopsis thalian 0.808 0.595 0.604 2.4e-110
TAIR|locus:505006470 522 ATB' GAMMA [Arabidopsis thalia 0.962 0.741 0.535 4.9e-108
TAIR|locus:2085099499 ATB' BETA [Arabidopsis thalian 0.791 0.637 0.608 4e-106
TAIR|locus:2142619495 ATB' ALPHA [Arabidopsis thalia 0.791 0.642 0.593 9.5e-105
TAIR|locus:2092080477 ATB' DELTA "serine/threonine p 0.783 0.660 0.577 7.6e-99
TAIR|locus:2092175 529 AT3G26020 [Arabidopsis thalian 0.534 0.406 0.626 3.8e-98
TAIR|locus:2082677497 AT3G54930 [Arabidopsis thalian 0.773 0.625 0.549 1.6e-93
FB|FBgn0042693 984 PP2A-B' "PP2A-B'" [Drosophila 0.778 0.318 0.523 4.5e-91
TAIR|locus:2179499 AT5G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1319 (469.4 bits), Expect = 1.2e-134, P = 1.2e-134
 Identities = 249/387 (64%), Positives = 301/387 (77%)

Query:     1 MLKQILSKLPRKSPKSDQLDEIXXXXXXXXXXXXXQCTNGGNGXXXXXXXXXXXXXXXFP 60
             M KQ LSKLPRKS KSD  +                 T+GG                 FP
Sbjct:     1 MFKQFLSKLPRKSSKSDSGELNRSSSGPVSSPVQRSGTSGGGSGPVRSNSGKRMSSAVFP 60

Query:    61 SSIMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIE 120
             +S++AG+E + P   FKDV +++K NLFVSK++LCC   DFSD  K + E+D+KRQTL+E
Sbjct:    61 ASVVAGIEPLVP---FKDVPSSEKLNLFVSKVSLCCVTFDFSDPGKNSIEKDVKRQTLLE 117

Query:   121 LADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQ 180
             L DFV+SGS KFTEPAI  MC+MC++NLFRVFPP  RS+ +GGE +D+EPMFDPAW HLQ
Sbjct:   118 LLDFVASGSVKFTEPAILAMCRMCAVNLFRVFPPNYRSS-SGGENDDDEPMFDPAWPHLQ 176

Query:   181 IVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMA 240
             IVYDLLL+F++   LD KVAKKY+DH FIVRLLDLFDSEDPRER+CLKT+LHR+YGKFM 
Sbjct:   177 IVYDLLLKFITSPCLDAKVAKKYLDHAFIVRLLDLFDSEDPRERECLKTILHRVYGKFMV 236

Query:   241 HRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLH 300
             HR F+R+++ NI YRFVFETE+H+GIAELLEIFGSI+SGFALPLKEEHKIFL R LIPLH
Sbjct:   237 HRPFVRKSMSNIFYRFVFETEKHSGIAELLEIFGSIVSGFALPLKEEHKIFLWRVLIPLH 296

Query:   301 KPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMT 360
             KPKSVG Y QQL+YC+ QFIDK+PKL +  IKGLLK+WP+TNSQKE+MF+ E+EE++E  
Sbjct:   297 KPKSVGNYFQQLSYCITQFIDKEPKLGSVVIKGLLKFWPITNSQKEVMFLGEVEEIVEAM 356

Query:   361 SMAEFQKIMVPLFRRIGCCLNSSHYQV 387
             S+ EFQKIMVPLF RI CC+ SSH+QV
Sbjct:   357 SVMEFQKIMVPLFLRIACCVTSSHFQV 383
GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISS
GO:0007165 "signal transduction" evidence=IEA;ISS
GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;ISS
TAIR|locus:2009912 AT1G13460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089905 AT3G21650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006470 ATB' GAMMA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085099 ATB' BETA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142619 ATB' ALPHA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092080 ATB' DELTA "serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092175 AT3G26020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082677 AT3G54930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0042693 PP2A-B' "PP2A-B'" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q93YV62A5I_ARATHNo assigned EC number0.66660.95270.766yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
pfam01603405 pfam01603, B56, Protein phosphatase 2A regulatory 1e-143
PLN00122170 PLN00122, PLN00122, serine/threonine protein phosp 2e-12
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 family) Back     alignment and domain information 
 Score =  413 bits (1063), Expect = e-143
 Identities = 172/314 (54%), Positives = 226/314 (71%), Gaps = 7/314 (2%)

Query: 76  FKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIELADFVSS--GSAKFT 133
             DV + + ++LF+ KL  CC + DFSD +     +++KRQTL E+ D+VS+     K T
Sbjct: 1   LPDVPSPEFKDLFLKKLKQCCVICDFSDPNSDLKAKEIKRQTLKEIVDYVSNSDIVGKLT 60

Query: 134 EPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYG 193
           E     + KM ++N+FR  PP    +    + +D+EP  +P+W HL +VY++LLRF+   
Sbjct: 61  EDLYDEIFKMIAVNIFRPLPPIPNPSL---DPDDDEPFLEPSWPHLSLVYEILLRFIE-- 115

Query: 194 SLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNII 253
           S      KKY+DH FI RLLDLFDS DPRERD LKT LHRIYGKF   R FIR+A+ +I+
Sbjct: 116 SPPFDPLKKYIDHSFIKRLLDLFDSPDPRERDQLKTFLHRIYGKFPGLRPFIRKAINSIL 175

Query: 254 YRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLT 313
           YRF++ETE+ NG+AELLEI GSII+GFALPLKEEHK FL + L+PLHK K + +YHQQL+
Sbjct: 176 YRFIYETEKPNGVAELLEILGSIINGFALPLKEEHKDFLLKVLLPLHKSKHLSLYHQQLS 235

Query: 314 YCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLF 373
           YCVVQFI+KDP LA   I+GLLK+WPVTNS KE++F+ ELEE+LE     EFQKIMVPLF
Sbjct: 236 YCVVQFIEKDPSLAEEVIRGLLKHWPVTNSSKEVLFLDELEEILEKIPPEEFQKIMVPLF 295

Query: 374 RRIGCCLNSSHYQV 387
           + +  C++S H+QV
Sbjct: 296 KILARCISSPHFQV 309

Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits (See also pfam01240), this family is called the B56 family. Length = 405
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 402
KOG2085457 consensus Serine/threonine protein phosphatase 2A, 100.0
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 100.0
PLN00122170 serine/threonine protein phosphatase 2A; Provision 98.45
PLN00122170 serine/threonine protein phosphatase 2A; Provision 97.62
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 88.51
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 84.13
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-131  Score=984.91  Aligned_cols=329  Identities=57%  Similarity=1.000  Sum_probs=325.5

Q ss_pred             ccCCCCCCCCChHHHHHHHHHHHhcCcccccccCCccChhhHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhHhhcc
Q 015699           70 VEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLF  149 (402)
Q Consensus        70 ~~~lp~l~dv~~~e~~~Lf~~Kl~~C~~ifDFsdp~~d~~~Ke~K~~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NIF  149 (402)
                      +++||+|+|||++|+++||++|+++||++|||+||.+|.++||+||+||+||+||+.++++++++.+|+++++|+++|||
T Consensus        42 l~~LP~~~dv~~se~~~Lf~~Kl~~Cc~~FDF~Dp~~~~~~keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~nif  121 (457)
T KOG2085|consen   42 LEPLPSLKDVPSSEQKELFIKKLEQCCVLFDFNDPLKDLKGKEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSVNIF  121 (457)
T ss_pred             ceeCCccCcCChhHhHHHHHHHHHhhheeeeccChhhhhccchhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhh
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCCCChHHHhhhcCHHHHHHHHhhcCCCChHHHHHHHH
Q 015699          150 RVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKT  229 (402)
Q Consensus       150 R~lP~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fi~~Ll~lf~S~DprERd~Lkt  229 (402)
                      |+|||..++++  +|+|||||+.|++|||||+||++|+||++||++|+++||+|||++||++|+++||||||||||+|||
T Consensus       122 R~lpp~~n~~~--~d~eedEp~le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT  199 (457)
T KOG2085|consen  122 RTLPPSVNPTG--FDYEEDEPVLEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKT  199 (457)
T ss_pred             ccCCcccCCCc--CCccccCcccCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHH
Confidence            99999999874  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHhHhhhcccCCcchHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCCCCCcccch
Q 015699          230 VLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYH  309 (402)
Q Consensus       230 iLhrIY~Kf~~~R~~IRk~i~nif~~fi~e~e~~nGIaeLLeIlgSIInGFa~PLKeEhk~fl~~vLlPLHk~~~l~~y~  309 (402)
                      +||||||||+++|+|||++|||+||+|||||++|||||||||||||||||||+|||||||.|+.||||||||+++++.||
T Consensus       200 ~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~l~~yh  279 (457)
T KOG2085|consen  200 ILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKSLSLYH  279 (457)
T ss_pred             HHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhCCCcHHHHH
Q 015699          310 QQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYF  389 (402)
Q Consensus       310 ~qL~yci~qfieKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~ef~~i~~plf~~la~ci~S~hfqVAE  389 (402)
                      +||+|||+||++|||+|+++||+||+||||+|||+||||||+||||||+.++|.+|++||+|||+|||+|++|+||||||
T Consensus       280 ~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HFQVAE  359 (457)
T KOG2085|consen  280 KQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHFQVAE  359 (457)
T ss_pred             cccceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCC
Q 015699          390 LFIMCMLINKRV  401 (402)
Q Consensus       390 rALm~~~~N~~~  401 (402)
                      ||| ++|+|+.|
T Consensus       360 raL-~~wnNe~i  370 (457)
T KOG2085|consen  360 RAL-YLWNNEYI  370 (457)
T ss_pred             HHH-HHHhhHHH
Confidence            997 89999854

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PLN00122 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>PLN00122 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
2jak_A392 Human Pp2a Regulatory Subunit B56g Length = 392 4e-95
2npp_B449 Structure Of The Protein Phosphatase 2a Holoenzyme 6e-95
2iae_B407 Crystal Structure Of A Protein Phosphatase 2a (Pp2a 1e-94
3fga_B403 Structural Basis Of Pp2a And Sgo Interaction Length 2e-93
2nyl_B388 Crystal Structure Of Protein Phosphatase 2a (Pp2a) 2e-90
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g Length = 392 Back     alignment and structure 
Iteration: 1

 Score =  345 bits (884), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 160/315 (50%), Positives = 217/315 (68%), Gaps = 1/315 (0%)
Query: 74  LSFKDVSNTQKQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKF 132
           L  +DV    ++ LF+ KL  CC + DF SD       +++KR  L E+ ++++      
Sbjct: 40  LHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVI 99
Query: 133 TEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSY 192
           TEP    +  M ++N+FR  PP     G   + E++EP  + AW HLQ+VY+  LRF+  
Sbjct: 100 TEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 159
Query: 193 GSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNI 252
                 +AKKY+D  F+++LL+LFDSEDPRERD LKT LHRIYGKF+  R +IR+ + NI
Sbjct: 160 PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 219
Query: 253 IYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQL 312
            YRF++ETE HNGIAELLEI GSII+GFALPLKEEHKIFL + L+PLHK KS+ +YH QL
Sbjct: 220 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL 279
Query: 313 TYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPL 372
            YCVVQF++KD  L    +  LLKYWP T+S KE+MF++ELEE+L++   +EF KIM PL
Sbjct: 280 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPL 339
Query: 373 FRRIGCCLNSSHYQV 387
           FR++  C++S H+QV
Sbjct: 340 FRQLAKCVSSPHFQV 354
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme Length = 449 Back     alignment and structure
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 407 Back     alignment and structure
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction Length = 403 Back     alignment and structure
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 388 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 1e-139
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 1e-136
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 1e-130
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Length = 449 Back     alignment and structure
 Score =  404 bits (1038), Expect = e-139
 Identities = 165/341 (48%), Positives = 225/341 (65%), Gaps = 1/341 (0%)

Query: 48  LSVVKRVSSAVFPSSIMAGVEAVEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDF-SDSDK 106
           L+  K  S  V  ++   G       L  +DV    ++ LF+ KL  CC + DF SD   
Sbjct: 2   LTCNKAGSRMVVDAANSNGPFQPVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLS 61

Query: 107 VTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETE 166
               +++KR  L E+ ++++      TEP    +  M ++N+FR  PP     G   + E
Sbjct: 62  DLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPE 121

Query: 167 DEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDC 226
           ++EP  + AW HLQ+VY+  LRF+        +AKKY+D  F+++LL+LFDSEDPRERD 
Sbjct: 122 EDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDF 181

Query: 227 LKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKE 286
           LKT LHRIYGKF+  R +IR+ + NI YRF++ETE HNGIAELLEI GSII+GFALPLKE
Sbjct: 182 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 241

Query: 287 EHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKE 346
           EHKIFL + L+PLHK KS+ +YH QL YCVVQF++KD  L    +  LLKYWP T+S KE
Sbjct: 242 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKE 301

Query: 347 LMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQV 387
           +MF++ELEE+L++   +EF KIM PLFR++  C++S H+QV
Sbjct: 302 VMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQV 342
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Length = 392 Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Length = 403 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query402
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 100.0
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 94.72
1ibr_B 462 P95, importin beta-1 subunit, nuclear factor; smal 94.68
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 94.57
1qgr_A 876 Protein (importin beta subunit); transport recepto 86.94
2km4_A142 Regulator of TY1 transposition protein 103; CTD-in 83.39
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 83.1
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 82.86
1qgr_A 876 Protein (importin beta subunit); transport recepto 80.53
2jdq_A 450 Importin alpha-1 subunit; transport, PB2 subunit, 80.49
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
Probab=100.00  E-value=4.7e-120  Score=916.78  Aligned_cols=330  Identities=49%  Similarity=0.888  Sum_probs=306.5

Q ss_pred             cCCCCCCCCChHHHHHHHHHHHhcCcccccc-cCCccChhhHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhHhhcc
Q 015699           71 EPHLSFKDVSNTQKQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLF  149 (402)
Q Consensus        71 ~~lp~l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sdp~~d~~~Ke~K~~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NIF  149 (402)
                      ++||+|+|++++|+++||++||++||++||| +||.+|+++||+||+||+||++|++++++++||++++++++||++|||
T Consensus        37 ~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~NiF  116 (392)
T 2jak_A           37 VVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMF  116 (392)
T ss_dssp             -----CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhC
Confidence            5999999999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCCCChHHHhhhcCHHHHHHHHhhcCCCChHHHHHHHH
Q 015699          150 RVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKT  229 (402)
Q Consensus       150 R~lP~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fi~~Ll~lf~S~DprERd~Lkt  229 (402)
                      |++||.+++.+..||+|||||+.|++|||||+||++|+||+++++++++.||+|||++||.+|+++|+||||||||+||+
T Consensus       117 R~lPp~~~~~~~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~Lkt  196 (392)
T 2jak_A          117 RTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKT  196 (392)
T ss_dssp             SCCCC---------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             CCCCCCCCcccccCCccccccccccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHH
Confidence            99999888766689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHhHhhhcccCCcchHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCCCCCcccch
Q 015699          230 VLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYH  309 (402)
Q Consensus       230 iLhrIY~Kf~~~R~~IRk~i~nif~~fi~e~e~~nGIaeLLeIlgSIInGFa~PLKeEhk~fl~~vLlPLHk~~~l~~y~  309 (402)
                      +||||||||+++|+|||++|+|+|++||||+++||||+|||||+||||||||+|||+||+.||.||||||||+++++.||
T Consensus       197 iLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~  276 (392)
T 2jak_A          197 TLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYH  276 (392)
T ss_dssp             HHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhCCCcHHHHH
Q 015699          310 QQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYF  389 (402)
Q Consensus       310 ~qL~yci~qfieKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~ef~~i~~plf~~la~ci~S~hfqVAE  389 (402)
                      +||+||++||++|||+|+++|++||+||||+||++|||+||+||++||+.+++++|+++++|+|++||+|++|+||||||
T Consensus       277 ~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAE  356 (392)
T 2jak_A          277 PQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAE  356 (392)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCC
Q 015699          390 LFIMCMLINKRV  401 (402)
Q Consensus       390 rALm~~~~N~~~  401 (402)
                      ||| ++|+|+.+
T Consensus       357 rAL-~~wnNe~i  367 (392)
T 2jak_A          357 RAL-YYWNNEYI  367 (392)
T ss_dssp             HHH-GGGGCHHH
T ss_pred             HHH-HHhCcHHH
Confidence            995 89999864
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A* Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 402
d2jaka1343 a.118.1.20 (A:30-372) Serine/threonine-protein pho 1e-143
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 343 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  408 bits (1051), Expect = e-143
 Identities = 159/312 (50%), Positives = 216/312 (69%), Gaps = 1/312 (0%)

Query: 77  KDVSNTQKQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEP 135
           +DV    ++ LF+ KL  CC + DF SD       +++KR  L E+ ++++      TEP
Sbjct: 2   RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 61

Query: 136 AISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSL 195
               +  M ++N+FR  PP     G   + E++EP  + AW HLQ+VY+  LRF+     
Sbjct: 62  IYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDF 121

Query: 196 DVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYR 255
              +AKKY+D  F+++LL+LFDSEDPRERD LKT LHRIYGKF+  R +IR+ + NI YR
Sbjct: 122 QPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYR 181

Query: 256 FVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYC 315
           F++ETE HNGIAELLEI GSII+GFALPLKEEHKIFL + L+PLHK KS+ +YH QL YC
Sbjct: 182 FIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYC 241

Query: 316 VVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRR 375
           VVQF++KD  L    +  LLKYWP T+S KE+MF++ELEE+L++   +EF KIM PLFR+
Sbjct: 242 VVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQ 301

Query: 376 IGCCLNSSHYQV 387
           +  C++S H+QV
Sbjct: 302 LAKCVSSPHFQV 313

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query402
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 100.0
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 88.46
d1q1sc_ 434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 87.84
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 87.12
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 81.39
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-115  Score=867.74  Aligned_cols=325  Identities=49%  Similarity=0.904  Sum_probs=305.7

Q ss_pred             CCCCChHHHHHHHHHHHhcCcccccc-cCCccChhhHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhHhhcccCCCC
Q 015699           76 FKDVSNTQKQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPP  154 (402)
Q Consensus        76 l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sdp~~d~~~Ke~K~~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NIFR~lP~  154 (402)
                      |+|||++||++||++||++||++||| +||++|+++|++||++|+||++++++++++++|++++++++||++||||++||
T Consensus         1 l~d~~~~e~~~lf~~Kl~~C~~i~DF~~d~~~d~~~K~~K~~~L~el~~~~~~~~~~l~e~~~~~i~~Mi~~NifR~lPp   80 (343)
T d2jaka1           1 IRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPP   80 (343)
T ss_dssp             CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHHCSCCCC
T ss_pred             CCCCChHHHHHHHHHHHHHhCcccCCCCCccccHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            68999999999999999999999999 79999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCCCChHHHhhhcCHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 015699          155 KCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRI  234 (402)
Q Consensus       155 ~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fi~~Ll~lf~S~DprERd~LktiLhrI  234 (402)
                      .+++.+.+||+|||||+.|++|||||+||++|+||++++++|++.+++|+|++||.+|+++|+|+||||||+||++||||
T Consensus        81 ~~~~~~~~~~~e~d~~~~e~sWpHL~lVY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~i  160 (343)
T d2jaka1          81 SSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRI  160 (343)
T ss_dssp             ---------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCccccccCccccccccCCCCchHHHHHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            98876678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhHHHHHHHHHHHhHhhhcccCCcchHHHHHHHHHHHhccCCCchHHHHHHHHHHhhccCCCCCcccchhhHHH
Q 015699          235 YGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTY  314 (402)
Q Consensus       235 Y~Kf~~~R~~IRk~i~nif~~fi~e~e~~nGIaeLLeIlgSIInGFa~PLKeEhk~fl~~vLlPLHk~~~l~~y~~qL~y  314 (402)
                      ||||+++|++||++|+++|++||||+++||||+|||||+|||||||++|||+||+.|+.++|+||||+++++.||+||+|
T Consensus       161 y~kf~~~R~~Ir~~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~  240 (343)
T d2jaka1         161 YGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAY  240 (343)
T ss_dssp             HHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 015699          315 CVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVYFLFIMC  394 (402)
Q Consensus       315 ci~qfieKDp~L~~~vi~~LLk~WP~tns~KEvlFL~EleeiLe~~~~~ef~~i~~plf~~la~ci~S~hfqVAErALm~  394 (402)
                      |++||++|||+|+.++++||+||||+||++|||+||+||++||+.+++++|+++++|+|++||+|++|+||||||||| +
T Consensus       241 ~v~~f~~kDp~l~~~~i~~llk~WP~t~~~Kev~FL~el~~il~~~~~~~f~~~~~~lf~~la~ci~S~h~qVAErAl-~  319 (343)
T d2jaka1         241 CVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERAL-Y  319 (343)
T ss_dssp             HHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH-G
T ss_pred             HHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHH-H
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999995 8


Q ss_pred             HhhcCCC
Q 015699          395 MLINKRV  401 (402)
Q Consensus       395 ~~~N~~~  401 (402)
                      +|+|+.+
T Consensus       320 ~w~N~~~  326 (343)
T d2jaka1         320 YWNNEYI  326 (343)
T ss_dssp             GGGCHHH
T ss_pred             HHCCHHH
Confidence            9999863
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure