Citrus Sinensis ID: 015709
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 402 | 2.2.26 [Sep-21-2011] | |||||||
| A1DLW4 | 216 | Hsp70 nucleotide exchange | N/A | no | 0.432 | 0.805 | 0.308 | 3e-16 | |
| Q4WDH3 | 216 | Hsp70 nucleotide exchange | yes | no | 0.432 | 0.805 | 0.303 | 2e-15 | |
| Q1E3S4 | 212 | Hsp70 nucleotide exchange | N/A | no | 0.412 | 0.783 | 0.317 | 1e-14 | |
| Q32KV6 | 462 | Nucleotide exchange facto | yes | no | 0.430 | 0.374 | 0.327 | 1e-14 | |
| Q9H173 | 461 | Nucleotide exchange facto | yes | no | 0.475 | 0.414 | 0.326 | 1e-14 | |
| Q0CH70 | 212 | Hsp70 nucleotide exchange | N/A | no | 0.405 | 0.768 | 0.315 | 2e-14 | |
| A2R4I6 | 287 | Hsp70 nucleotide exchange | yes | no | 0.298 | 0.418 | 0.371 | 6e-14 | |
| Q6P6S4 | 465 | Nucleotide exchange facto | yes | no | 0.430 | 0.372 | 0.322 | 7e-14 | |
| Q9EPK6 | 465 | Nucleotide exchange facto | yes | no | 0.430 | 0.372 | 0.322 | 8e-14 | |
| Q4P7F2 | 285 | Hsp70 nucleotide exchange | N/A | no | 0.497 | 0.701 | 0.286 | 1e-13 |
| >sp|A1DLW4|FES1_NEOFI Hsp70 nucleotide exchange factor fes1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fes1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 94/178 (52%), Gaps = 4/178 (2%)
Query: 78 SIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAI 137
+++ +L+W+I +S A+ A D +P+ + + + L PSDA L++ A+
Sbjct: 4 NMNNLLKWSIENSTSAR---QAADSNDAAPAPTSRSNLNPEMLSALFGGPSDADLMKAAM 60
Query: 138 DDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWI 197
+ L++ + LE+ A L+E IDNAN+L LG + LV L H + ++R+++AW
Sbjct: 61 EALHSDEVDLENKMIAFDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEAEMRRMAAWC 120
Query: 198 LGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRNNLAGQEMF 254
+G A QNN Q +++ L L+ M S A KA+Y +SS +RN + F
Sbjct: 121 IGTAVQNNEKAQDKLIVFNVLPTLVAMSTSDPAPAARKKAVYAISSGVRNYQPAMDEF 178
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Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117) |
| >sp|Q4WDH3|FES1_ASPFU Hsp70 nucleotide exchange factor fes1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=fes1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 4/178 (2%)
Query: 78 SIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAI 137
+++ +L+W+I +S A+ A + P+ + + + L PSDA L++ A+
Sbjct: 4 NMNNLLKWSIENSTSAR---QAGNSNGTGPAPASRSNLNPEMLSALFGGPSDADLMKAAM 60
Query: 138 DDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWI 197
+ L++ + LE+ A L+E IDNAN+L LG + LV L H + ++R+++AW
Sbjct: 61 EALHSDEVDLENKMIAFDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEAEMRRMAAWC 120
Query: 198 LGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRNNLAGQEMF 254
+G A QNN Q +++ L L+ M S A KA+Y +SS +RN + F
Sbjct: 121 IGTAVQNNEKAQDKLIVFNVLPTLVAMSTSDPAPAARKKAVYAISSGVRNYQPAMDEF 178
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Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879) |
| >sp|Q1E3S4|FES1_COCIM Hsp70 nucleotide exchange factor FES1 OS=Coccidioides immitis (strain RS) GN=FES1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 100/173 (57%), Gaps = 7/173 (4%)
Query: 77 SSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIA 136
S ++ +L+W+I +S PA+ + Q Q S L + ++ L+ PSDA L++ A
Sbjct: 3 SHMNNLLKWSIENSVPAQPDDPEQVKQERSLDRLDTQALQ--RLLSN--APSDADLMKAA 58
Query: 137 IDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAW 196
++ +++ +LE+ A L+E +DNAN++ LG + LV L+ + +RK++AW
Sbjct: 59 MEVVSDDFATLENKLIAFDNFEQLIENLDNANNMGVLGLWTPLVEALSDAEPQMRKMAAW 118
Query: 197 ILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAV--KALYTVSSLIRNN 247
+G A QNN + Q ++L+ A+ KL+ + K+ + V KA+Y +SS +RN+
Sbjct: 119 CIGTAVQNNEMAQNKLLDFKAVPKLLSLAKTD-PDTTVRRKAIYALSSAVRNH 170
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Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Coccidioides immitis (strain RS) (taxid: 246410) |
| >sp|Q32KV6|SIL1_BOVIN Nucleotide exchange factor SIL1 OS=Bos taurus GN=SIL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 101/180 (56%), Gaps = 7/180 (3%)
Query: 109 ELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN 168
ELKK E+ ++E +D Q++ I+ N+S+ SLE+ AL +L V +DNA
Sbjct: 167 ELKKDFEELNVVIE-----TDMQIMVRLINKFNSSSSSLEEKIAALFDLEYYVHQMDNAQ 221
Query: 169 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS- 227
DL GGL V++ LN + +++ +A++LG A +NP VQ + +E GAL KL+ ++ +
Sbjct: 222 DLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATE 281
Query: 228 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287
+ KAL+ + SL+R+ Q+ F G +L+ ++ E+ L + V+L+ DL
Sbjct: 282 QPLTTKKKALFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQEKGMEV-LAVRVVTLLYDL 340
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Required for protein translocation and folding in the endoplasmic reticulum (ER). Functions as a nucleotide exchange factor for the ER lumenal chaperone HSPA5. Bos taurus (taxid: 9913) |
| >sp|Q9H173|SIL1_HUMAN Nucleotide exchange factor SIL1 OS=Homo sapiens GN=SIL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 110/208 (52%), Gaps = 17/208 (8%)
Query: 93 AKLKETAQDVQRLSPSELKKRQMEIKEL---MEKLK---------TPSDAQLIQIAIDDL 140
AK KE A+ S E K RQ E+K L +E+LK +D Q++ I+
Sbjct: 136 AKFKEGAE---MESSKEDKARQAEVKRLFRPIEELKKDFDELNVVIETDMQIMVRLINKF 192
Query: 141 NNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGK 200
N+S+ SLE+ AL +L V +DNA DL GGL V++ LN + +++ +A++LG
Sbjct: 193 NSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGA 252
Query: 201 ASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 259
A +NP VQ + +E GAL KL+ ++ + + K L+ + SL+R+ Q F G
Sbjct: 253 AFSSNPKVQVEAIEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQRQFLKLGG 312
Query: 260 DLMLQDILGNSSFEIRLHRKAVSLVGDL 287
+L+ ++ E+ L + V+L+ DL
Sbjct: 313 LQVLRTLVQEKGTEV-LAVRVVTLLYDL 339
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Required for protein translocation and folding in the endoplasmic reticulum (ER). Functions as a nucleotide exchange factor for the ER lumenal chaperone HSPA5. Homo sapiens (taxid: 9606) |
| >sp|Q0CH70|FES1_ASPTN Hsp70 nucleotide exchange factor fes1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=fes1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 77 SSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIA 136
++++ +L+W+I +S A + A ++ R + + + PSDA L++ +
Sbjct: 3 ANMNKILKWSIQNSTNASSDQNAA-------ADATSRGLTPEMMATLFGGPSDADLMKAS 55
Query: 137 IDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAW 196
++ L + + LE+ A L+E IDNAN+L LG + LV L H + D+R+++AW
Sbjct: 56 MEALRSDEVDLENKLVAFDNFEQLIESIDNANNLEPLGLWTPLVELLRHEEADMRRMAAW 115
Query: 197 ILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRN 246
+G A QNN Q +++ L AL L+ M S A KA+Y +SS +RN
Sbjct: 116 CVGTAVQNNEKAQDKLVVLNALPTLVAMSTSDPNPAARKKAVYALSSAVRN 166
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Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663) |
| >sp|A2R4I6|FES1_ASPNC Hsp70 nucleotide exchange factor fes1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=fes1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP 186
PS+A L++ A++ L + + LE+ A L+E IDNAN+L LG + LV L+H
Sbjct: 55 PSEADLMKAAMEALRSDEVDLENKLIAFDNFEQLIESIDNANNLEPLGLWTPLVELLDHK 114
Query: 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIR 245
+ D+R+++AW +G A QNN Q +++ L AL KL+ + + KA+Y +SS +R
Sbjct: 115 EPDMRRMAAWCIGTAVQNNEKAQDKLIVLNALPKLVSLATADTTPVVRKKAVYAISSAVR 174
Query: 246 N 246
N
Sbjct: 175 N 175
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Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011) |
| >sp|Q6P6S4|SIL1_RAT Nucleotide exchange factor SIL1 OS=Rattus norvegicus GN=Sil1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 101/180 (56%), Gaps = 7/180 (3%)
Query: 109 ELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN 168
ELKK E+ ++E +D Q++ I+ N+S+ SLE+ AL +L V +DNA
Sbjct: 170 ELKKEFDELNVVLE-----TDMQIMVRLINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQ 224
Query: 169 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS- 227
DL GGL V++ LN + +++ +A++LG A +NP VQ + +E GAL KL+ ++ +
Sbjct: 225 DLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATE 284
Query: 228 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287
+ K L+ + SL+R+ Q+ F G +L+ ++ S ++ L + V+L+ DL
Sbjct: 285 QPLPAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQEKSAKV-LAVRVVTLLYDL 343
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Required for protein translocation and folding in the endoplasmic reticulum (ER). Functions as a nucleotide exchange factor for the ER lumenal chaperone HSPA5. Rattus norvegicus (taxid: 10116) |
| >sp|Q9EPK6|SIL1_MOUSE Nucleotide exchange factor SIL1 OS=Mus musculus GN=Sil1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 102/180 (56%), Gaps = 7/180 (3%)
Query: 109 ELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN 168
ELKK E+ ++E +D Q++ I+ N+S+ SLE+ AL +L V +DNA
Sbjct: 170 ELKKEFDELNVVLE-----TDMQIMVRLINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQ 224
Query: 169 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS 228
DL GGL V++ LN + +++ +A++LG A +NP VQ + +E GAL KL+ ++ ++
Sbjct: 225 DLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATN 284
Query: 229 -FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287
+ K L+ + SL+R+ Q+ F G +L+ ++ S ++ L + V+L+ DL
Sbjct: 285 QPLPAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQEKSAKV-LAVRVVTLLYDL 343
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Required for protein translocation and folding in the endoplasmic reticulum (ER). Functions as a nucleotide exchange factor for the ER lumenal chaperone HSPA5. Mus musculus (taxid: 10090) |
| >sp|Q4P7F2|FES1_USTMA Hsp70 nucleotide exchange factor FES1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=FES1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 110/213 (51%), Gaps = 13/213 (6%)
Query: 82 MLQWAIGHSDPAKLKETA-QDVQRLSPSELKKRQMEIKE--LMEKLKTPSDAQL----IQ 134
+L+W + +S + A Q V+++S R+ ++ + L + S+AQ+ +
Sbjct: 10 LLKWGLANSGSTGVASFASQSVEQISADIEAGRRPDLADPNLYNAIMGKSEAQMMAEELS 69
Query: 135 IAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKIS 194
+AID ++ +L D AL +L+E IDNAN+++ + S ++ L+ P+ +I+ +
Sbjct: 70 VAID----TSRTLPDRMTALDNFEMLIEQIDNANNMTSMKMWSPIISLLSAPEAEIQTAA 125
Query: 195 AWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254
AWI+G A QNN Q VL+ ++ L+ ++ S E KA+Y +S L+++N A F
Sbjct: 126 AWIIGTAVQNNDKAQMAVLDFHPVAALLDLLHSHVDEVRAKAMYALSGLLKHNPAAMHQF 185
Query: 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287
G ML L + + +R RK L+ L
Sbjct: 186 DQLDGWNMLNMALVDPNLGLR--RKTAFLINAL 216
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Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins. Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 402 | ||||||
| 359473854 | 395 | PREDICTED: hsp70 nucleotide exchange fac | 0.922 | 0.939 | 0.740 | 1e-156 | |
| 255543300 | 395 | sil1, putative [Ricinus communis] gi|223 | 0.940 | 0.956 | 0.715 | 1e-155 | |
| 224053615 | 400 | predicted protein [Populus trichocarpa] | 0.898 | 0.902 | 0.713 | 1e-147 | |
| 296085572 | 320 | unnamed protein product [Vitis vinifera] | 0.776 | 0.975 | 0.785 | 1e-137 | |
| 449445798 | 395 | PREDICTED: nucleotide exchange factor SI | 0.952 | 0.969 | 0.653 | 1e-133 | |
| 297819910 | 382 | binding protein [Arabidopsis lyrata subs | 0.925 | 0.973 | 0.624 | 1e-130 | |
| 15231095 | 382 | nucleotide exchange factor SIL1 [Arabido | 0.925 | 0.973 | 0.610 | 1e-127 | |
| 356574918 | 372 | PREDICTED: nucleotide exchange factor SI | 0.900 | 0.973 | 0.612 | 1e-118 | |
| 307135818 | 444 | SIL1 [Cucumis melo subsp. melo] | 0.927 | 0.840 | 0.549 | 1e-117 | |
| 357462195 | 378 | Nucleotide exchange factor SIL1 [Medicag | 0.803 | 0.854 | 0.653 | 1e-109 |
| >gi|359473854|ref|XP_002269010.2| PREDICTED: hsp70 nucleotide exchange factor FES1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 277/374 (74%), Positives = 318/374 (85%), Gaps = 3/374 (0%)
Query: 20 MITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSI 79
+ + +A+RVN SSS GLFWSTAKE+ D RK+E + + VND+ +LDGGFSS+
Sbjct: 17 FVGAVMAQADRVNKSSSGGLFWSTAKEEGDLMRKSEAQESTVG---VNDNADLDGGFSSL 73
Query: 80 DGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDD 139
DGMLQWAIGHSDP KLKETAQDVQR SP+ELKKRQMEIKELMEKLK PSDAQL+QIAI D
Sbjct: 74 DGMLQWAIGHSDPTKLKETAQDVQRFSPNELKKRQMEIKELMEKLKMPSDAQLMQIAIAD 133
Query: 140 LNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILG 199
LNNS+L +ED RALQELLILVEPIDNANDL+KLGGL+V++ +L++PD +IRK SAWILG
Sbjct: 134 LNNSSLPMEDHHRALQELLILVEPIDNANDLNKLGGLTVVIRELDNPDPEIRKTSAWILG 193
Query: 200 KASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 259
KASQNNP+VQKQVLELGAL KLMKMV SSFVEEA KALY VS+LIRNNLA QE+FY +AG
Sbjct: 194 KASQNNPVVQKQVLELGALPKLMKMVNSSFVEEATKALYAVSALIRNNLAAQELFYAKAG 253
Query: 260 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA 319
DLMLQDIL N S +IRL RK V LVGDLA+CQLE+ HK E P F +R FLKSVVDLTAS+
Sbjct: 254 DLMLQDILSNPSIDIRLRRKTVFLVGDLAECQLESTHKAELPFFSNRHFLKSVVDLTASS 313
Query: 320 DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVE 379
DLDLQEKAL A+KNLLQLRTTEALV KD+C LD ALER+R+QLQ++M EE QRDY MD+E
Sbjct: 314 DLDLQEKALIAVKNLLQLRTTEALVFKDYCDLDGALERMRKQLQQLMDEEYQRDYVMDLE 373
Query: 380 ALRREVELIFFRKL 393
+L REVELIF +KL
Sbjct: 374 SLCREVELIFHKKL 387
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543300|ref|XP_002512713.1| sil1, putative [Ricinus communis] gi|223548674|gb|EEF50165.1| sil1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust.
Identities = 272/380 (71%), Positives = 327/380 (86%), Gaps = 2/380 (0%)
Query: 15 LLVLLMITMAIGRAERVNNSSSA-GLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELD 73
L+ +++ITM + ER+N SSS+ G+FWST KE+ D RKAE ++D +AAA+VNDHD LD
Sbjct: 9 LVTVILITM-VAEGERLNKSSSSSGVFWSTVKEESDLLRKAEPDEDPSAAAVVNDHDHLD 67
Query: 74 GGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLI 133
GGFSS+DGMLQWA+GHSDP KLKETAQDV+RLSP++LK RQ+EIKELM++LK PSDA L+
Sbjct: 68 GGFSSLDGMLQWAVGHSDPEKLKETAQDVRRLSPTDLKNRQLEIKELMDELKMPSDAHLM 127
Query: 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKI 193
Q AI+DL+NS+L LED RALQELLILVEPIDNANDLSKLGGL VL+ +LNHPD++IR+I
Sbjct: 128 QNAINDLSNSSLPLEDHHRALQELLILVEPIDNANDLSKLGGLGVLIRELNHPDSNIRRI 187
Query: 194 SAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253
SAW+LGKASQNNP VQKQVLE+GAL+KLM+MVKS+ EE +KALY VS+LIRNNLAGQE+
Sbjct: 188 SAWVLGKASQNNPFVQKQVLEMGALNKLMQMVKSNCAEEGIKALYAVSALIRNNLAGQEL 247
Query: 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 313
FY EAGD MLQ+ILG+SS +IRL RKAV LV DLA+CQLEN+ + E P F +RFFLKSVV
Sbjct: 248 FYAEAGDQMLQEILGDSSTDIRLRRKAVFLVADLAECQLENVGRAELPFFSNRFFLKSVV 307
Query: 314 DLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRD 373
DL +S DLDLQEKAL A+KNLLQL+T EA V+KDFCGLD ALER+RQQL +M +E RD
Sbjct: 308 DLVSSTDLDLQEKALVAVKNLLQLKTIEASVIKDFCGLDGALERMRQQLHVLMTQETYRD 367
Query: 374 YAMDVEALRREVELIFFRKL 393
YA D+E+LRREVELIF+ KL
Sbjct: 368 YATDIESLRREVELIFYSKL 387
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224053615|ref|XP_002297899.1| predicted protein [Populus trichocarpa] gi|222845157|gb|EEE82704.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 259/363 (71%), Positives = 313/363 (86%), Gaps = 2/363 (0%)
Query: 33 NSSSAGLFWSTAKEDEDQPRKAE--RNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIGHS 90
S++AGL WST K++ D KAE +DDS+AAA+VNDHD+LDGGFSS++GML WAIGHS
Sbjct: 30 TSATAGLLWSTGKDEPDLLSKAEPENSDDSSAAAVVNDHDDLDGGFSSLEGMLHWAIGHS 89
Query: 91 DPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDS 150
DP KLKE A+DVQRLS SEL+KRQ+E+KELMEK+K PSDA+L+ +AIDDLNNS+ SLED
Sbjct: 90 DPTKLKENAEDVQRLSASELQKRQIELKELMEKMKMPSDAELMHMAIDDLNNSSSSLEDR 149
Query: 151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210
QRALQELLILVEP+DNANDL+KLGGL++++ +L+HPD DIR++SAW+LGKA QNN VQK
Sbjct: 150 QRALQELLILVEPLDNANDLNKLGGLAIVIQELDHPDHDIRRLSAWVLGKACQNNAAVQK 209
Query: 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270
Q+LELGALSKL+KMVKSS +EEA+KALY VS+LI+N+LAGQE FY E GD MLQ+IL NS
Sbjct: 210 QILELGALSKLIKMVKSSSIEEAIKALYAVSTLIQNHLAGQEFFYAEDGDAMLQEILSNS 269
Query: 271 SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA 330
S +IRL RKAVS+V DLA+ QLEN+ + E P FR+RFFLKSVVDLTAS DLDLQEKAL A
Sbjct: 270 SNDIRLLRKAVSVVADLAEYQLENIIRAESPCFRNRFFLKSVVDLTASTDLDLQEKALVA 329
Query: 331 IKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFF 390
+KNLLQL+TT+ALVLKD C LD +LER+R+QL ++M EED RDYA+D+E LR EVELIF
Sbjct: 330 VKNLLQLKTTDALVLKDLCNLDGSLERMRRQLLDLMAEEDHRDYAVDLETLRGEVELIFH 389
Query: 391 RKL 393
KL
Sbjct: 390 EKL 392
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085572|emb|CBI29304.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 245/312 (78%), Positives = 275/312 (88%)
Query: 82 MLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLN 141
MLQWAIGHSDP KLKETAQDVQR SP+ELKKRQMEIKELMEKLK PSDAQL+QIAI DLN
Sbjct: 1 MLQWAIGHSDPTKLKETAQDVQRFSPNELKKRQMEIKELMEKLKMPSDAQLMQIAIADLN 60
Query: 142 NSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKA 201
NS+L +ED RALQELLILVEPIDNANDL+KLGGL+V++ +L++PD +IRK SAWILGKA
Sbjct: 61 NSSLPMEDHHRALQELLILVEPIDNANDLNKLGGLTVVIRELDNPDPEIRKTSAWILGKA 120
Query: 202 SQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 261
SQNNP+VQKQVLELGAL KLMKMV SSFVEEA KALY VS+LIRNNLA QE+FY +AGDL
Sbjct: 121 SQNNPVVQKQVLELGALPKLMKMVNSSFVEEATKALYAVSALIRNNLAAQELFYAKAGDL 180
Query: 262 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADL 321
MLQDIL N S +IRL RK V LVGDLA+CQLE+ HK E P F +R FLKSVVDLTAS+DL
Sbjct: 181 MLQDILSNPSIDIRLRRKTVFLVGDLAECQLESTHKAELPFFSNRHFLKSVVDLTASSDL 240
Query: 322 DLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEAL 381
DLQEKAL A+KNLLQLRTTEALV KD+C LD ALER+R+QLQ++M EE QRDY MD+E+L
Sbjct: 241 DLQEKALIAVKNLLQLRTTEALVFKDYCDLDGALERMRKQLQQLMDEEYQRDYVMDLESL 300
Query: 382 RREVELIFFRKL 393
REVELIF +KL
Sbjct: 301 CREVELIFHKKL 312
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445798|ref|XP_004140659.1| PREDICTED: nucleotide exchange factor SIL1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 257/393 (65%), Positives = 311/393 (79%), Gaps = 10/393 (2%)
Query: 4 RRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDED---QPRKAERNDDS 60
RR+ + LW + L+I A N+SS GL WS+AK++ D R E + +
Sbjct: 2 RRSLVVGLCLWFSLTLVIVDA-------NDSSLEGLIWSSAKQEGDLLIDHRPQEDSSAA 54
Query: 61 TAAAIVNDHDELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKEL 120
AA++V+D D DGGFSS+D MLQWAIGHSDPAKLK+TAQDV+RLSP+E+KKRQ EIK+L
Sbjct: 55 AAASVVHDADGFDGGFSSLDSMLQWAIGHSDPAKLKDTAQDVKRLSPNEIKKRQEEIKDL 114
Query: 121 MEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLV 180
+E+LK PSDA+L+QIA+DDL NS+LSLED RALQELL+LVEPIDNANDL KLGGL+VL
Sbjct: 115 IEELKLPSDAKLMQIAVDDLKNSSLSLEDRHRALQELLVLVEPIDNANDLDKLGGLAVLT 174
Query: 181 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTV 240
+LNH D D+RKI+AWILGKASQNNP+VQKQVLELGAL+KL+ M KS FVEEA+KALY +
Sbjct: 175 RELNHVDPDVRKIAAWILGKASQNNPIVQKQVLELGALAKLVSMAKSDFVEEAIKALYAI 234
Query: 241 SSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP 300
SSL++NNL+GQE+FY EAG++MLQDIL NSS +IRL +KAV LV DLA QLE + E
Sbjct: 235 SSLVQNNLSGQELFYAEAGEIMLQDILSNSSMDIRLQKKAVFLVSDLAVTQLEKPDEAER 294
Query: 301 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 360
P F DR FLKSVV+L S D+DLQEKAL A+KNLL LRTT+A VLK+FCGLD ALER+R
Sbjct: 295 PFFGDRLFLKSVVNLIHSTDIDLQEKALIALKNLLLLRTTKAQVLKEFCGLDAALERMRM 354
Query: 361 QLQEVMLEEDQRDYAMDVEALRREVELIFFRKL 393
+L+ +M EED RDYAMDVE LR +VEL F KL
Sbjct: 355 KLKVLMEEEDHRDYAMDVEDLRSQVELTFLEKL 387
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297819910|ref|XP_002877838.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297323676|gb|EFH54097.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 239/383 (62%), Positives = 304/383 (79%), Gaps = 11/383 (2%)
Query: 11 RALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHD 70
R + LLV++ + + AE+VN SS G+ WSTA+++ AE +DS ++ + D
Sbjct: 8 RCMLLLVVISL-VGCSIAEKVN--SSGGIVWSTARDE------AELVEDS--GVVIGEQD 56
Query: 71 ELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDA 130
++DGGFSS+DGML WAIGHSDPA LKE A+D +++S EL+KRQ+E+KEL+EKLK PSDA
Sbjct: 57 QIDGGFSSLDGMLHWAIGHSDPATLKEAAKDAEKMSLDELQKRQLELKELVEKLKMPSDA 116
Query: 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190
L+QIAIDDL NS+LSLED RALQELLILVEPIDNANDLSK GGL V+ G+LNH DT++
Sbjct: 117 NLMQIAIDDLKNSSLSLEDRHRALQELLILVEPIDNANDLSKSGGLRVVAGELNHDDTEV 176
Query: 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 250
RK++AW+LGKASQNNP VQ+QVLELGAL+ L+KMV SS EEAVKAL+ VS+LIRNN+AG
Sbjct: 177 RKLAAWVLGKASQNNPFVQEQVLELGALTTLIKMVNSSSDEEAVKALFAVSALIRNNIAG 236
Query: 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 310
Q+MFY G +ML+D++ N S +I+L RKAV LVGDLA+ QL+N K E P+F+DRFFLK
Sbjct: 237 QDMFYAAHGYIMLKDVMSNGSLDIKLRRKAVFLVGDLAESQLQNTGKDELPIFKDRFFLK 296
Query: 311 SVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEED 370
SVVDL DLDLQEKAL AI+ LLQL++ E +LK+FCGL+ LER++ QL+E M +E
Sbjct: 297 SVVDLIVVLDLDLQEKALTAIQTLLQLKSIEPQILKEFCGLEETLERMKLQLEESMADEY 356
Query: 371 QRDYAMDVEALRREVELIFFRKL 393
+RDYA DVE++R EVELIF +KL
Sbjct: 357 KRDYAADVESIRGEVELIFRQKL 379
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231095|ref|NP_190766.1| nucleotide exchange factor SIL1 [Arabidopsis thaliana] gi|4678927|emb|CAB41318.1| hypothetical protein [Arabidopsis thaliana] gi|20268764|gb|AAM14085.1| unknown protein [Arabidopsis thaliana] gi|21689669|gb|AAM67456.1| unknown protein [Arabidopsis thaliana] gi|332645350|gb|AEE78871.1| nucleotide exchange factor SIL1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 234/383 (61%), Positives = 305/383 (79%), Gaps = 11/383 (2%)
Query: 11 RALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHD 70
R ++LLV++ + + AE+VN SS G+ WS+ +++ AE +DS ++ + D
Sbjct: 8 RYVFLLVVISL-VGFSIAEKVN--SSGGMVWSSVRDE------AELVEDS--GVVIGEQD 56
Query: 71 ELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDA 130
++DGGFSS+DGML WAIGHSDPA LKE A+D +++S EL+KRQ+E+KEL+EKLK PS+A
Sbjct: 57 QIDGGFSSLDGMLHWAIGHSDPATLKEAAKDAEKMSLDELQKRQLELKELVEKLKMPSNA 116
Query: 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190
+L+QIAIDDLNNS+LSLED RALQELLILVEPIDNANDLSK GGL V+ G+LNH DT++
Sbjct: 117 KLMQIAIDDLNNSSLSLEDRHRALQELLILVEPIDNANDLSKSGGLRVVAGELNHDDTEV 176
Query: 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 250
RK++AW+LGKASQNNP VQ+QVLELGAL+ L+KMV SS EEAVKAL+ VS+LIRNN+AG
Sbjct: 177 RKLAAWVLGKASQNNPFVQEQVLELGALTTLIKMVNSSSTEEAVKALFAVSALIRNNIAG 236
Query: 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 310
Q++F+ G +ML+D++ N S +++L RKAV LVGDLA+ QL+N K E P+F+DR FLK
Sbjct: 237 QDLFFAAHGYIMLRDVMNNGSLDMKLRRKAVFLVGDLAESQLQNTEKDELPIFKDRLFLK 296
Query: 311 SVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEED 370
SVVDL DLDLQEKAL AI+ LLQL++ E VLK+ CGL+ ALER++ QL+E M +E
Sbjct: 297 SVVDLIVVLDLDLQEKALTAIQTLLQLKSIEPQVLKESCGLEEALERMKLQLEESMADEY 356
Query: 371 QRDYAMDVEALRREVELIFFRKL 393
+RDYA DVE++R EVELIF +KL
Sbjct: 357 KRDYAADVESIRGEVELIFRQKL 379
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574918|ref|XP_003555590.1| PREDICTED: nucleotide exchange factor SIL1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 236/385 (61%), Positives = 275/385 (71%), Gaps = 23/385 (5%)
Query: 16 LVLLMITMAI----GRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDE 71
L LL T A+ G AE N +S GL WSTA E+ D +
Sbjct: 7 LSLLFFTAAVAAETGGAE--PNLTSGGLLWSTAAEESDLAPPPD---------------- 48
Query: 72 LDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQ 131
DGGFSS+DGMLQWAI HSDP KLKE+A+ QRL PSEL KRQ EIKE+MEK+K PSDA+
Sbjct: 49 -DGGFSSLDGMLQWAISHSDPGKLKESAEAQQRLPPSELYKRQFEIKEIMEKMKMPSDAE 107
Query: 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIR 191
L++IAI DLNN + SLED RALQELL LVE IDNANDLSKLGGL + +L D IR
Sbjct: 108 LMRIAISDLNNVSTSLEDRHRALQELLELVESIDNANDLSKLGGLLAVREELYCSDPGIR 167
Query: 192 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ 251
I+AW+LGKASQNN +VQ+Q+LELG LS+LMKMV S+ +EEA KALY VS+LIRN+LA Q
Sbjct: 168 TIAAWVLGKASQNNAIVQQQILELGVLSRLMKMVNSNSMEEANKALYAVSALIRNDLASQ 227
Query: 252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS 311
+FY EAG MLQDIL N+S ++RL RKAV L+ DLA QLEN+ + E P F D+ LK+
Sbjct: 228 GLFYAEAGGWMLQDILSNTSLDVRLRRKAVRLLADLAAYQLENVDREEQPFFNDQDLLKA 287
Query: 312 VVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQ 371
VVDLT S DLDLQEKAL AIK+LLQLRTTEA V KDFC L AL R+RQ L ++M +E Q
Sbjct: 288 VVDLTTSTDLDLQEKALVAIKSLLQLRTTEARVFKDFCALGDALNRMRQLLHDLMADEYQ 347
Query: 372 RDYAMDVEALRREVELIFFRKLDDS 396
RDY MDVE LR EVE F RKL S
Sbjct: 348 RDYVMDVENLRVEVEHTFQRKLKQS 372
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307135818|gb|ADN33690.1| SIL1 [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 250/455 (54%), Positives = 301/455 (66%), Gaps = 82/455 (18%)
Query: 4 RRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAA 63
RR+ + LW + L+I A N+SS GL WS+AKED + AA
Sbjct: 2 RRSLVVGLCLWFSLTLVIADA-------NDSSLEGLIWSSAKEDSA----------AAAA 44
Query: 64 AIVNDHDELDG-------------------------------GFSSIDGMLQ-------- 84
+V+D D DG G SI M++
Sbjct: 45 PVVHDADGFDGGFSSLDSMLQWAIGPVTKQGLPDNSIDVSFAGLHSIRAMIEEFLLHPPS 104
Query: 85 ----------------WAI----------GHSDPAKLKETAQDVQRLSPSELKKRQMEIK 118
W I GHSDPAKLK+TAQDV++LSPSE+KKRQ EIK
Sbjct: 105 RDKGVFLWLAEVCAVVWYIWGERNDRVFWGHSDPAKLKDTAQDVKQLSPSEIKKRQEEIK 164
Query: 119 ELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSV 178
+L+E+LK PSDA+L+QIA+DDL NS+LSLED RALQELL+LVEPIDNANDL KLGGL+V
Sbjct: 165 DLIEELKLPSDAKLMQIAVDDLKNSSLSLEDRHRALQELLVLVEPIDNANDLDKLGGLAV 224
Query: 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALY 238
L +LNH D D+RKI+AWILGKASQNNP+VQKQVLELGAL+KL+ MVKS FVEEA+KALY
Sbjct: 225 LTRELNHVDPDVRKIAAWILGKASQNNPIVQKQVLELGALAKLVSMVKSDFVEEAIKALY 284
Query: 239 TVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV 298
+SSL++NNL+GQ++FY EAG+ MLQDIL NSS +IRL +KAV L DL QLE +
Sbjct: 285 AISSLVQNNLSGQKLFYAEAGETMLQDILSNSSMDIRLQKKAVFLASDLTVTQLEKPDEA 344
Query: 299 EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358
E P F DRFFLKSVV+L S D+DLQEKAL A+KNLL LRTT+A VLK+FCGLD ALER+
Sbjct: 345 ERPFFGDRFFLKSVVNLIHSTDIDLQEKALIALKNLLLLRTTKAQVLKEFCGLDAALERM 404
Query: 359 RQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKL 393
R +L+ +M EED RDYAMDVE LR +VE IF KL
Sbjct: 405 RMKLKVLMEEEDHRDYAMDVEDLRSQVEQIFLEKL 439
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357462195|ref|XP_003601379.1| Nucleotide exchange factor SIL1 [Medicago truncatula] gi|355490427|gb|AES71630.1| Nucleotide exchange factor SIL1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 211/323 (65%), Positives = 256/323 (79%)
Query: 73 DGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQL 132
DGGF S+D ML WAI HSDP KLKE+AQ Q+LSPSEL+KRQ+EIKE+MEK K SDA+L
Sbjct: 55 DGGFPSMDSMLHWAISHSDPEKLKESAQSHQKLSPSELQKRQLEIKEIMEKTKMLSDAEL 114
Query: 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRK 192
++IAI DLNN++ SLED RAL ELL LVEP+DNANDL+KLGGL + +L H D+ IR
Sbjct: 115 MKIAIKDLNNASTSLEDRYRALLELLELVEPLDNANDLNKLGGLHAVTQELKHYDSGIRA 174
Query: 193 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252
+AW+LGKASQNNP Q+QVLELG LS+L+ MVKSS +EE +KALY VS+L RNNLA QE
Sbjct: 175 TAAWVLGKASQNNPTFQQQVLELGVLSRLIAMVKSSSIEEGIKALYAVSALTRNNLANQE 234
Query: 253 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV 312
+FY E G LMLQDIL N+S +I+L RKAV L+ DLA QLEN++K EPP F ++ LKSV
Sbjct: 235 LFYAEGGGLMLQDILRNASIDIKLRRKAVLLLTDLADYQLENVNKDEPPFFNNQDLLKSV 294
Query: 313 VDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQR 372
VDLTAS DLDLQEKAL AIK+LLQLRTT+A V +D C L AL R ++ L ++M +EDQR
Sbjct: 295 VDLTASTDLDLQEKALVAIKSLLQLRTTKARVFRDLCALGDALNRTKELLHDLMADEDQR 354
Query: 373 DYAMDVEALRREVELIFFRKLDD 395
DY MDVE +R EVE I+ RKL++
Sbjct: 355 DYVMDVENVRIEVESIYHRKLEN 377
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 402 | ||||||
| TAIR|locus:2083800 | 382 | AT3G51980 "AT3G51980" [Arabido | 0.925 | 0.973 | 0.587 | 3.6e-112 | |
| TAIR|locus:2185113 | 324 | Fes1C "Fes1C" [Arabidopsis tha | 0.666 | 0.827 | 0.290 | 6.6e-15 | |
| TAIR|locus:2084365 | 363 | Fes1B "Fes1B" [Arabidopsis tha | 0.676 | 0.749 | 0.285 | 7.4e-15 | |
| TAIR|locus:2083559 | 363 | Fes1A "Fes1A" [Arabidopsis tha | 0.721 | 0.798 | 0.254 | 7.4e-15 | |
| UNIPROTKB|F1NWG7 | 380 | SIL1 "Uncharacterized protein" | 0.686 | 0.726 | 0.273 | 2.7e-14 | |
| ASPGD|ASPL0000004813 | 218 | AN6543 [Emericella nidulans (t | 0.420 | 0.775 | 0.258 | 2.6e-12 | |
| UNIPROTKB|Q32KV6 | 462 | SIL1 "Nucleotide exchange fact | 0.756 | 0.658 | 0.267 | 2.1e-11 | |
| MGI|MGI:1932040 | 465 | Sil1 "endoplasmic reticulum ch | 0.746 | 0.645 | 0.289 | 7.7e-11 | |
| UNIPROTKB|Q9H173 | 461 | SIL1 "Nucleotide exchange fact | 0.475 | 0.414 | 0.302 | 3.6e-10 | |
| RGD|735103 | 465 | Sil1 "SIL1 homolog, endoplasmi | 0.467 | 0.404 | 0.306 | 3.6e-10 |
| TAIR|locus:2083800 AT3G51980 "AT3G51980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1107 (394.7 bits), Expect = 3.6e-112, P = 3.6e-112
Identities = 225/383 (58%), Positives = 294/383 (76%)
Query: 11 RALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHD 70
R ++LLV++ + + AE+VN SS G+ WS+ +++ AE +DS ++ + D
Sbjct: 8 RYVFLLVVISL-VGFSIAEKVN--SSGGMVWSSVRDE------AELVEDS--GVVIGEQD 56
Query: 71 ELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDA 130
++DGGFSS+DGML WAIGHSDPA LKE A+D +++S EL+KRQ+E+KEL+EKLK PS+A
Sbjct: 57 QIDGGFSSLDGMLHWAIGHSDPATLKEAAKDAEKMSLDELQKRQLELKELVEKLKMPSNA 116
Query: 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDI 190
+L+QIAIDDLNNS+LSLED RALQELLILVEPIDNAND NH DT++
Sbjct: 117 KLMQIAIDDLNNSSLSLEDRHRALQELLILVEPIDNANDLSKSGGLRVVAGELNHDDTEV 176
Query: 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 250
RK++AW+LGKASQNNP VQ+QVLELGAL+ L+KMV SS EEAVKAL+ VS+LIRNN+AG
Sbjct: 177 RKLAAWVLGKASQNNPFVQEQVLELGALTTLIKMVNSSSTEEAVKALFAVSALIRNNIAG 236
Query: 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 310
Q++F+ G +ML+D++ N S +++L RKAV LVGDLA+ QL+N K E P+F+DR FLK
Sbjct: 237 QDLFFAAHGYIMLRDVMNNGSLDMKLRRKAVFLVGDLAESQLQNTEKDELPIFKDRLFLK 296
Query: 311 SVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEED 370
SVVDL DLDLQEKAL AI+ LLQL++ E VLK+ CGL+ ALER++ QL+E M +E
Sbjct: 297 SVVDLIVVLDLDLQEKALTAIQTLLQLKSIEPQVLKESCGLEEALERMKLQLEESMADEY 356
Query: 371 QRDYAMDVEALRREVELIFFRKL 393
+RDYA DVE++R EVELIF +KL
Sbjct: 357 KRDYAADVESIRGEVELIFRQKL 379
|
|
| TAIR|locus:2185113 Fes1C "Fes1C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 209 (78.6 bits), Expect = 6.6e-15, P = 6.6e-15
Identities = 84/289 (29%), Positives = 138/289 (47%)
Query: 80 DGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDD 139
DG+L+W++ HSD + T Q + + Q + +++++LK + Q++Q
Sbjct: 9 DGLLKWSLSHSDGTR--PTCQLSEEDRKWFAEAMQSQTVDVVKRLKEIT--QVLQTPQQV 64
Query: 140 LNNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILG 199
L ++ +D + L EL VE ID AND + + +IR SA ++
Sbjct: 65 LEAHEVTPQDIEGLLDELQEHVESIDMANDLHSVGGLVPLLGYLKNSNANIRAKSADVVS 124
Query: 200 KASQNNPLVQKQVLELGAL-SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 258
+NNP Q+ V+E L S L++ + + +AL +SSLIRNN G F +
Sbjct: 125 TIVENNPRSQESVMEANGLESLLLRFTSDTDMHSRTQALGAISSLIRNNKPGITGFRIAN 184
Query: 259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV-DLTA 317
G L+D L S +R RKA++L+ L + EN + + F L ++ L +
Sbjct: 185 GYSGLKDALETDS--VRFQRKALNLLHYLLQ---ENDSDSDIAI---EFGLHHLMMHLVS 236
Query: 318 SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTAL--ERLRQQLQE 364
S D D++E AA++ LL+L +A CG ERLRQ L++
Sbjct: 237 SFDADVRE---AALRGLLEL--VKARKDCSTCGSSIVKGDERLRQILKD 280
|
|
| TAIR|locus:2084365 Fes1B "Fes1B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 7.4e-15, P = 7.4e-15
Identities = 85/298 (28%), Positives = 137/298 (45%)
Query: 80 DGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDD 139
DG+L+W++ HSD A + R ++ Q + + ++K S Q++++
Sbjct: 9 DGLLKWSLSHSDGASSSSRISEEDR--QWFVEAMQAHTIDSISRMKVIS--QIMKMPEQV 64
Query: 140 LNNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILG 199
L ++ +D + L EL VE ID AND + + IR SA +L
Sbjct: 65 LEAQGVTPDDLEGMLAELQEHVESIDLANDLHSIGGLVPLLSYLKNSNAKIRAKSADVLT 124
Query: 200 KASQNNPLVQKQVLELGALSKLM-KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 258
QNNP Q+ V+E L+ + + KAL +SSLIRNN G F +
Sbjct: 125 TVVQNNPRSQQLVMEANGFEPLLTNFIADPDIRVRTKALGAISSLIRNNQPGITAFRLAN 184
Query: 259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 318
G L+D L + + +R RKA++L+ L Q N + + RD F + ++ L ++
Sbjct: 185 GYAGLRDALVSDT--VRFQRKALNLLHYLL--QESNS---DCKIVRDLGFPRIMIHLASN 237
Query: 319 ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQE------VMLEED 370
D +++E AL + LL+L E++ LD LRQ L+E VM +ED
Sbjct: 238 QDFEVREFAL---RGLLELAREESVR-----NLDRGDVNLRQLLEERTRRIIVMSDED 287
|
|
| TAIR|locus:2083559 Fes1A "Fes1A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 7.4e-15, P = 7.4e-15
Identities = 79/311 (25%), Positives = 152/311 (48%)
Query: 80 DGMLQWAIGHSDPAK-LKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAID 138
DG+L+W++ H+D + ++ +++ ++ ++ + +++ + M+++ ++Q
Sbjct: 9 DGLLKWSLSHADGTRPTRQLSEEDRKWFMEAMQSQTVDVVKRMKEITL-----VMQTPEQ 63
Query: 139 DLNNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWIL 198
L ++ ED Q L EL VE ID AND + +IR +A ++
Sbjct: 64 VLVEHGVTPEDIQDLLDELQEHVESIDMANDLHSIGGLVPLLSFLKNSHANIRAKAADVV 123
Query: 199 GKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVE 257
QNNP Q+ V+E AL L+ S + +AL +SSLIR+N G F +
Sbjct: 124 STIVQNNPRSQELVMETNALESLLSNFTSDTDIHARTQALGAISSLIRHNKPGVTAFKLA 183
Query: 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA 317
G L+D L + S +R RKA++L+ L + + ++ + L F + ++ L +
Sbjct: 184 NGYAGLRDALASDS--VRFQRKALNLLQYLLQ-EDDSDRSIATGLG----FPRVMMHLAS 236
Query: 318 SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMD 377
S D +++E AA++ LL+L + +D + E+LRQ L+E ++ D
Sbjct: 237 SDDAEIRE---AALRGLLELSREKN---DGSSSIDKSDEKLRQLLEE-RIKGITLMSQED 289
Query: 378 VEALRREVELI 388
+E ++ E +L+
Sbjct: 290 LETVKEERQLV 300
|
|
| UNIPROTKB|F1NWG7 SIL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 83/303 (27%), Positives = 147/303 (48%)
Query: 93 AKLKETAQDVQRLSPSELKK--RQME-IKELMEKL--KTPSDAQLIQIAIDDLNNSTLSL 147
AK+KE+ + + E++K R +E +KE EKL K +D +++ I N+S +L
Sbjct: 61 AKMKESEKAERMAHEEEVRKKFRPIEQLKEEFEKLNVKMETDYEIMDKLISKFNSSASTL 120
Query: 148 EDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILGKASQNNPL 207
++ AL +L V +DNA D N + +++ +A++LG A +NP
Sbjct: 121 DEKVAALYDLEYYVHQVDNAKDFLSMGGLRLVIEGLNSTEAVLKEHAAFVLGAALSSNPK 180
Query: 208 VQKQVLELGALSKLMKMVKSSFVEEAVK--ALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 265
VQ + +E GAL KL+ +V + +AVK AL+ +SSL+R+ Q+ F G +L+
Sbjct: 181 VQIEAIEGGALQKLLVIVATE-QPQAVKKKALFALSSLLRHFPYAQQQFLKLGGLQVLRG 239
Query: 266 IL---GNSSFEIR----LHRKAVSLV-------GDLAKCQLENMHKVE-PPLFRDRFFLK 310
+ G S+ +R L+ V + GD A+ +++ +V+ P ++ +
Sbjct: 240 LFRQPGTSALCVRAVTLLYDLFVEKMLLEDSQHGDHAEEKVQQYRRVQLVPAVLEQDWCV 299
Query: 311 SVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEED 370
+V L A + D +EK L A+ L++ + L L LR + +E+ E
Sbjct: 300 AVPGLLALPEHDAREKVLKAVAVLMEFCRER---FRGDAALGATLGLLRSEYEELAAAE- 355
Query: 371 QRD 373
+RD
Sbjct: 356 RRD 358
|
|
| ASPGD|ASPL0000004813 AN6543 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 171 (65.3 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 45/174 (25%), Positives = 84/174 (48%)
Query: 78 SIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAI 137
+++ +L+W I +S + + + + S+ + + + L PS+A L++ A+
Sbjct: 4 NMNNLLKWGIQNSTATQQTSDSNN----NASQAPRSNITPEMLSALFGGPSEADLMKAAM 59
Query: 138 DDLNNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWI 197
+ L + + LE+ A L+E IDNAN+ H + D+R+++AW
Sbjct: 60 EALRSDEVDLENKLIAFDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEPDMRRMAAWC 119
Query: 198 LGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRNNLAG 250
+G A QNN Q +++ + A+ L+ M V KA+Y +SS +RN G
Sbjct: 120 IGTAVQNNEKAQDKLIVMNAIPTLVSMSTQDPVPAVRKKAVYALSSAVRNYQPG 173
|
|
| UNIPROTKB|Q32KV6 SIL1 "Nucleotide exchange factor SIL1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 184 (69.8 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 86/321 (26%), Positives = 152/321 (47%)
Query: 93 AKLKETAQDVQRLSPSELKKRQME-IKELMEKLKT--PSDAQLIQIAIDDLNNSTLSLED 149
A+++ + +D +R + + R +E +K+ E+L +D Q++ I+ N+S+ SLE+
Sbjct: 143 AEMENSKEDQERQAKVKRLFRPIEELKKDFEELNVVIETDMQIMVRLINKFNSSSSSLEE 202
Query: 150 SQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILGKASQNNPLVQ 209
AL +L V +DNA D N + +++ +A++LG A +NP VQ
Sbjct: 203 KIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQ 262
Query: 210 KQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG 268
+ +E GAL KL+ ++ + + KAL+ + SL+R+ Q+ F G +L+ ++
Sbjct: 263 VEAIEGGALQKLLVILATEQPLTTKKKALFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQ 322
Query: 269 NSSFEIRLHRKAVSLVGDLA--KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK 326
E+ L + V+L+ DL K E ++ + R V L S LQE+
Sbjct: 323 EKGMEV-LAVRVVTLLYDLVTEKMFAEEDAELTWDMSPKRLQQYRQVHLLPS----LQEQ 377
Query: 327 ALAAIK-NLLQLRTTEAL--VLKDFCGL-DTALERLRQQLQ-EVMLEEDQRDY-AMDVEA 380
I +LL L +A VL+ L T +R Q Q L Q +Y A+
Sbjct: 378 GWCEITAHLLALPEHDAREKVLQTLGALLATCRDRFHQDTQLHRTLGTLQAEYQALAALE 437
Query: 381 LRREVELIFFRKLDDSGSNMI 401
L+ + +FR+L DS +++
Sbjct: 438 LQEGEDEGYFRELLDSIDSLL 458
|
|
| MGI|MGI:1932040 Sil1 "endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 179 (68.1 bits), Expect = 7.7e-11, P = 7.7e-11
Identities = 92/318 (28%), Positives = 148/318 (46%)
Query: 94 KLKETAQDVQRLSP-SELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQR 152
+L A Q P ELKK E EL L+T D Q++ I+ N+S+ SLE+
Sbjct: 154 ELARQATVKQLFRPIEELKK---EFDELNVVLET--DMQIMVRLINKFNSSSSSLEEKVA 208
Query: 153 ALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILGKASQNNPLVQKQV 212
AL +L V +DNA D N + +++ +A++LG A +NP VQ +
Sbjct: 209 ALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEA 268
Query: 213 LELGALSKLMKMVKSSFVEEAVK-ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271
+E GAL KL+ ++ ++ A K L+ + SL+R+ Q+ F G +L+ ++ S
Sbjct: 269 IEGGALQKLLVILATNQPLPAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQEKS 328
Query: 272 FEIRLHRKAVSLVGDLAKCQLENMH-KVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA 330
++ L + V+L+ DL E M + E L +D K LQE+
Sbjct: 329 AKV-LAVRVVTLLYDLVT---EKMFAEEEAELTQDSSPEKLQQYRQVQLLPGLQEQGWCE 384
Query: 331 IK-NLLQLRTTEAL--VLKDFCGL-DTALERLRQQLQ-EVMLEEDQRDY-AMDVEALRRE 384
I LL L +A VL+ L T +R RQ LQ L Q +Y A+ L+
Sbjct: 385 ITAQLLALPEHDAREKVLQTLGALLTTCRDRYRQDLQLSRTLGRLQAEYQALASLELQEG 444
Query: 385 VELIFFRKLDDSGSNMIR 402
+ +FR+L S +++++
Sbjct: 445 EDDGYFRELLASINSLMK 462
|
|
| UNIPROTKB|Q9H173 SIL1 "Nucleotide exchange factor SIL1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 63/208 (30%), Positives = 104/208 (50%)
Query: 93 AKLKETAQDVQRLSPSELKKRQMEIKEL---MEKLKTP---------SDAQLIQIAIDDL 140
AK KE A+ ++ S E K RQ E+K L +E+LK +D Q++ I+
Sbjct: 136 AKFKEGAE-ME--SSKEDKARQAEVKRLFRPIEELKKDFDELNVVIETDMQIMVRLINKF 192
Query: 141 NNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILGK 200
N+S+ SLE+ AL +L V +DNA D N + +++ +A++LG
Sbjct: 193 NSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGA 252
Query: 201 ASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVK-ALYTVSSLIRNNLAGQEMFYVEAG 259
A +NP VQ + +E GAL KL+ ++ + A K L+ + SL+R+ Q F G
Sbjct: 253 AFSSNPKVQVEAIEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQRQFLKLGG 312
Query: 260 DLMLQDILGNSSFEIRLHRKAVSLVGDL 287
+L+ ++ E+ L + V+L+ DL
Sbjct: 313 LQVLRTLVQEKGTEV-LAVRVVTLLYDL 339
|
|
| RGD|735103 Sil1 "SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 60/196 (30%), Positives = 98/196 (50%)
Query: 94 KLKETAQDVQRLSP-SELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQR 152
+L A Q P ELKK E EL L+T D Q++ I+ N+S+ SLE+
Sbjct: 154 ELARQATVKQLFRPIEELKK---EFDELNVVLET--DMQIMVRLINKFNSSSSSLEEKVA 208
Query: 153 ALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILGKASQNNPLVQKQV 212
AL +L V +DNA D N + +++ +A++LG A +NP VQ +
Sbjct: 209 ALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEA 268
Query: 213 LELGALSKLMKMVKSSFVEEAVK-ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271
+E GAL KL+ ++ + A K L+ + SL+R+ Q+ F G +L+ ++ S
Sbjct: 269 IEGGALQKLLVILATEQPLPAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQEKS 328
Query: 272 FEIRLHRKAVSLVGDL 287
++ L + V+L+ DL
Sbjct: 329 AKV-LAVRVVTLLYDL 343
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 402 | |||
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 1e-04 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 1e-04 | |
| pfam08609 | 87 | pfam08609, Fes1, Nucleotide exchange factor Fes1 | 0.002 | |
| COG0216 | 363 | COG0216, PrfA, Protein chain release factor A [Tra | 0.002 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 206
++ AL L DN + + GGL LV L D ++ K + W L +
Sbjct: 24 QREAAWALSNLSAGNN--DNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81
Query: 207 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR 245
+ VLE G + KL+ ++ SS + A +S+L
Sbjct: 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 169 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS 228
+ + GGL LV L+ D ++++ +AW L S N + V+E G L L++++KS
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 229 ---FVEEAVKALYTVSS 242
V+ A+ AL +++
Sbjct: 62 DEEVVKAALWALRNLAA 78
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|219931 pfam08609, Fes1, Nucleotide exchange factor Fes1 | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.002
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 77 SSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIA 136
+++ +L+W+I E + PS + R ++ + L + PSDA L++ A
Sbjct: 3 KNMNNLLKWSI---------ENSTGAGSSPPSIPQPRSLDPEMLDQLFGGPSDADLMKAA 53
Query: 137 IDDLNNSTLSLEDSQRALQELLILVEPIDNANDL 170
++ + + ++LED A +L+E IDNAN+L
Sbjct: 54 MEVITDEEVTLEDKVIAFDNFEMLIENIDNANNL 87
|
Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity. Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity. Length = 87 |
| >gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 89 HSDPAKLKETAQDVQRLSP-----SELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNS 143
SDP + ++ +++ L P E KK Q ++++ E L D ++ ++A +++
Sbjct: 29 ISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKEL 88
Query: 144 TLSLEDSQRALQELLILVEPIDNAN 168
+E+ + L+ LL+ +P D+ N
Sbjct: 89 EAKIEELEEELKILLLPKDPNDDKN 113
|
Length = 363 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 402 | |||
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 100.0 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.85 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.8 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.76 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.76 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.76 | |
| PF08609 | 92 | Fes1: Nucleotide exchange factor Fes1; InterPro: I | 99.75 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.72 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.63 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.59 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.54 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.39 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.22 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.19 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.18 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 99.18 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 98.95 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.94 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.87 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 98.82 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.77 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 98.76 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 98.73 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.59 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.29 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.28 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.27 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 98.27 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.24 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.2 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 98.11 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 98.08 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 98.05 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 98.05 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 97.97 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.93 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 97.9 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 97.88 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 97.86 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.86 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.85 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.84 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.79 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 97.76 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.75 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 97.72 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 97.68 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.66 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.63 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 97.56 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 97.53 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 97.5 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 97.47 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 97.44 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.38 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.37 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.36 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.35 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.32 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.23 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 97.19 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 97.11 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.04 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 96.99 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 96.98 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 96.94 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 96.93 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 96.79 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 96.76 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 96.72 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 96.71 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 96.7 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 96.62 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 96.54 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 96.52 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 96.51 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.5 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 96.49 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 96.47 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 96.43 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 96.39 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 96.29 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 96.26 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 96.17 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 96.15 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 96.14 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 96.13 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 96.05 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 96.05 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 95.98 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 95.94 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 95.92 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 95.9 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 95.88 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 95.76 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.74 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 95.64 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 95.59 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 95.42 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 95.4 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 95.37 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 95.33 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 95.19 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 95.03 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 94.79 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 94.71 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 94.71 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.65 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 94.58 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 94.48 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 94.47 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 94.46 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 94.38 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 94.29 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 94.24 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 94.17 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 94.08 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 93.97 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 93.97 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 93.92 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 93.89 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 93.89 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 93.86 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 93.81 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 93.69 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 93.69 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 93.67 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 93.63 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 93.63 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 93.33 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 93.3 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 93.23 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 93.22 | |
| PF00790 | 140 | VHS: VHS domain; InterPro: IPR002014 The VHS domai | 92.86 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 92.66 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 92.5 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 92.44 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 92.39 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 92.37 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 92.14 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 91.89 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 91.82 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 91.79 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 91.67 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 91.54 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 91.49 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 91.14 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 91.02 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 90.6 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 90.54 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 90.17 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 90.16 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 90.14 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 90.06 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 90.0 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 89.64 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 89.41 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 89.16 | |
| PF01365 | 207 | RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodi | 89.1 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 88.83 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 88.79 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 88.6 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 87.75 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 87.67 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 87.35 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 87.32 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 87.29 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 87.14 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 87.03 | |
| PF04869 | 312 | Uso1_p115_head: Uso1 / p115 like vesicle tethering | 86.94 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 86.79 | |
| KOG1566 | 342 | consensus Conserved protein Mo25 [Function unknown | 86.75 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 86.49 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 86.46 | |
| PF14726 | 98 | RTTN_N: Rotatin, an armadillo repeat protein, cent | 86.24 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 86.24 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 86.05 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 85.66 | |
| KOG1788 | 2799 | consensus Uncharacterized conserved protein [Funct | 85.61 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 85.51 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 85.5 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 85.4 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 85.37 | |
| PF11707 | 330 | Npa1: Ribosome 60S biogenesis N-terminal; InterPro | 85.24 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 85.08 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 85.05 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 84.72 | |
| KOG2676 | 478 | consensus Uncharacterized conserved protein [Funct | 84.16 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 84.06 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 83.89 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 83.16 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 83.15 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 83.12 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 82.63 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 82.44 | |
| cd03565 | 141 | VHS_Tom1 VHS domain family, Tom1 subfamily; The VH | 82.32 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 82.15 | |
| PF08324 | 268 | PUL: PUL domain; InterPro: IPR013535 The PUL (afte | 81.74 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 81.64 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 81.24 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 81.23 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 80.24 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 80.06 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 80.04 |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=359.05 Aligned_cols=311 Identities=33% Similarity=0.455 Sum_probs=269.0
Q ss_pred CCCChHHHHHHHhhcC--CCccccch--------hhccCCCCHHHHHHhHHHHHHHHHHcC---------CCCHHHHHHH
Q 015709 75 GFSSIDGMLQWAIGHS--DPAKLKET--------AQDVQRLSPSELKKRQMEIKELMEKLK---------TPSDAQLIQI 135 (402)
Q Consensus 75 ~~~~~~gLLkwsi~~s--d~~~~~~~--------~~~~~~~s~e~l~~r~~~L~ea~~~l~---------~~~d~~lMk~ 135 (402)
..++|+|+++|+..++ .|+++... ..+.+ ++ +.|++|+.++|..-+ +......|+.
T Consensus 10 ~~~~~~gl~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~ 84 (342)
T KOG2160|consen 10 RPPNQEGLLEWSLQLSQSLGSRPDIQISGDLGMAEAKLK--DE---KEDRKWLQELMQAHTEDQKDFVEDMKVISDVMSM 84 (342)
T ss_pred cCccccchhhcccccccccCCCchhhhccchhhhhhhcc--Cc---ccchHHHHHHHHHhhhhhhhhcccchhHHHHHHh
Confidence 3678999999999998 55553211 01111 11 458999998887643 1222345555
Q ss_pred -HHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHH
Q 015709 136 -AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE 214 (402)
Q Consensus 136 -al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le 214 (402)
++..+++++.++++|+.||++|+++||+||||++|+++|||++++.+|+++++++|+.|+|+||+++||||++|+.+++
T Consensus 85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E 164 (342)
T KOG2160|consen 85 IPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIE 164 (342)
T ss_pred hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccc
Q 015709 215 LGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 293 (402)
Q Consensus 215 ~g~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~ 293 (402)
.|++++|+.++++++ ..+|.||+||||+++|||++++..|...+|+..|..+|++++.++++|+||++++++|+..
T Consensus 165 ~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~--- 241 (342)
T KOG2160|consen 165 LGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE--- 241 (342)
T ss_pred cccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh---
Confidence 999999999999776 4678999999999999999999999999999999999999878999999999999999964
Q ss_pred cCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhHHhhhhhhHhh
Q 015709 294 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRD 373 (402)
Q Consensus 294 ~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~~l~~~e~~~~ 373 (402)
+.+....+...|+...+.++..+.+.++.|+++.++..++..-....+.+...++++..|+++.+.+.+.+..+++..
T Consensus 242 --~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~~~~~~~~~l~e~l~~~~q~~~~~~~~~~e~~ 319 (342)
T KOG2160|consen 242 --DKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRKELFVSLLNLEELLKSLIQIISDHAALEEERQ 319 (342)
T ss_pred --hhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566778899999999999999999999999999998876443334666688999999999999998888888999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 015709 374 YAMDVEALRREVELIFFRKLDD 395 (402)
Q Consensus 374 y~~~l~~~~~e~~~~~~~~~~~ 395 (402)
|++++...+.|+..+|+++++.
T Consensus 320 l~~~l~~~~~e~~~~~~~~~~~ 341 (342)
T KOG2160|consen 320 LVNSLWEICGEVPSILRKLLGS 341 (342)
T ss_pred HHHHHHHHhcccHHHHHHHhcc
Confidence 9999999999999999999975
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=191.69 Aligned_cols=240 Identities=18% Similarity=0.196 Sum_probs=206.8
Q ss_pred HHHHHHHcC---CCC-HHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhcCCCCHH
Q 015709 117 IKELMEKLK---TPS-DAQLIQIAIDDLNN--STLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTD 189 (402)
Q Consensus 117 L~ea~~~l~---~~~-d~~lMk~al~~L~~--~~~t~e~k~~AL~~L~~Lve~-iDnA~~l~~lGgl~~Li~lL~s~~~~ 189 (402)
+.|++..|. .|. +.+.++.++.+|.. ...+++....|+..+.||.+. .|.-..+.+.|+++.|+.+|.++++.
T Consensus 215 ~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~ 294 (514)
T KOG0166|consen 215 ATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPK 294 (514)
T ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcc
Confidence 456777762 244 45889998888754 334678889999999999954 56777889999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc
Q 015709 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG 268 (402)
Q Consensus 190 Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~ 268 (402)
++..|.+.+|++++.+....+.++..|++|.|..+++... ..++..|+|+|||++.|++...++++++|-++.|+++|+
T Consensus 295 v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~ 374 (514)
T KOG0166|consen 295 VVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQ 374 (514)
T ss_pred cccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHh
Confidence 9999999999999999999999999999999999999544 568888999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhH------
Q 015709 269 NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA------ 342 (402)
Q Consensus 269 s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~------ 342 (402)
+. +.++|++|+|+|+|++.. +.++...++++.|+++.++++|...|.++...++.++.++....+...
T Consensus 375 ~~--ef~~rKEAawaIsN~ts~----g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~ 448 (514)
T KOG0166|consen 375 TA--EFDIRKEAAWAISNLTSS----GTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNP 448 (514)
T ss_pred cc--chHHHHHHHHHHHhhccc----CCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccH
Confidence 85 799999999999999974 468889999999999999999999999999999999999988754322
Q ss_pred --HHHHhcCCcHHHHHHHHHHhH
Q 015709 343 --LVLKDFCGLDTALERLRQQLQ 363 (402)
Q Consensus 343 --~~~~~~~GL~~~L~~L~~~~~ 363 (402)
..+. ++|..+.++.|+++-+
T Consensus 449 ~~~~IE-e~ggldkiE~LQ~hen 470 (514)
T KOG0166|consen 449 LAIMIE-EAGGLDKIENLQSHEN 470 (514)
T ss_pred HHHHHH-HccChhHHHHhhcccc
Confidence 2445 6666677788877655
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.1e-19 Score=180.76 Aligned_cols=219 Identities=19% Similarity=0.228 Sum_probs=185.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
+...++.|.... ++.-+..|-..|-++.. ..+..+.+++.|.+|.++.+|.+++..|+..|.|+||+++-..|.+++.
T Consensus 111 v~~lV~~l~~~~-~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~ 189 (514)
T KOG0166|consen 111 VPRLVEFLSRDD-NPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDY 189 (514)
T ss_pred HHHHHHHHccCC-ChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHH
Confidence 445666665432 46778888899988774 4678889999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 212 VLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~~~-~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
++++|++++|+.++..... .....+.|+|||++||..|.-..-.-...++.|..++++. |..+...|+|+|+||+.
T Consensus 190 vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~--D~~Vl~Da~WAlsyLsd- 266 (514)
T KOG0166|consen 190 VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST--DEEVLTDACWALSYLTD- 266 (514)
T ss_pred HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhc-
Confidence 9999999999999998765 6789999999999999644333333467899999999986 77899999999999984
Q ss_pred ccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHH
Q 015709 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 291 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~ 360 (402)
..++..+.+++.|+++.|+++|.+.+..++-.|++++.+++..++...+.+- .+|+.+.|..|-+
T Consensus 267 ----g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi-~~~~L~~l~~ll~ 331 (514)
T KOG0166|consen 267 ----GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVI-NSGALPVLSNLLS 331 (514)
T ss_pred ----CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHH-hcChHHHHHHHhc
Confidence 4678889999999999999999999999999999999999999888778877 5555555444443
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.8e-18 Score=165.32 Aligned_cols=221 Identities=18% Similarity=0.162 Sum_probs=193.4
Q ss_pred HHHHHHcC-C---CCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCCCCHHH
Q 015709 118 KELMEKLK-T---PSDAQLIQIAIDDLNN--STLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDI 190 (402)
Q Consensus 118 ~ea~~~l~-~---~~d~~lMk~al~~L~~--~~~t~e~k~~AL~~L~~Lve~i-DnA~~l~~lGgl~~Li~lL~s~~~~I 190 (402)
.|.+..+. + |.+-..|.+++.+|.. .+.++|....|+..+.++++-. +....+.+.|-.+.|+.+|.|++..|
T Consensus 222 TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~i 301 (526)
T COG5064 222 TWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKI 301 (526)
T ss_pred HHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccc
Confidence 35566652 2 4466788888888754 2347788999999999999865 34456778888899999999999999
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015709 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (402)
Q Consensus 191 r~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (402)
+..|.+.+|+++..+....+.++..|+++.+..+|++....+|+.|+|.|||++.++....+++++++-+++|+++|.+-
T Consensus 302 qtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a 381 (526)
T COG5064 302 QTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA 381 (526)
T ss_pred cCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH
Confidence 99999999999999998888899999999999999998889999999999999999999999999999999999999984
Q ss_pred CccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhH
Q 015709 271 SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA 342 (402)
Q Consensus 271 ~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~ 342 (402)
+.++|..|+|+++|...+. ...|+....++++|+++.|+++|...|..+.|.+|.++.+++..++..+
T Consensus 382 --e~k~kKEACWAisNatsgg--~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~ 449 (526)
T COG5064 382 --EYKIKKEACWAISNATSGG--LNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDR 449 (526)
T ss_pred --HHHHHHHHHHHHHhhhccc--cCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHH
Confidence 8999999999999988754 2457888899999999999999999999999999999999998875544
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7e-17 Score=187.46 Aligned_cols=221 Identities=19% Similarity=0.161 Sum_probs=176.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHH
Q 015709 135 IAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL 213 (402)
Q Consensus 135 ~al~~L~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~l 213 (402)
.+++.|.++ +.+.+..|+..|..+.... ++...+.+.||+|+|+++|.+++..+|..|+|+|+|++.+++.+|..+.
T Consensus 450 ~LV~LL~s~--s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~ 527 (2102)
T PLN03200 450 LLISLLGLS--SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVE 527 (2102)
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 344555553 4577888899999988644 5778899999999999999999999999999999999998777777777
Q ss_pred HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh-------------------------------------------------
Q 015709 214 ELGALSKLMKMVKSSFVEEAVKALYTVSSLI------------------------------------------------- 244 (402)
Q Consensus 214 e~g~L~~Ll~LL~s~~~~vr~kAl~ALS~Li------------------------------------------------- 244 (402)
+.|++|+|+++|++.+..++..|+|||++++
T Consensus 528 ~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~ 607 (2102)
T PLN03200 528 SAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAA 607 (2102)
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhc
Confidence 7788888888887766666666666666664
Q ss_pred ------------------------------cCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhccccc
Q 015709 245 ------------------------------RNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (402)
Q Consensus 245 ------------------------------R~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~ 294 (402)
.+++...+.++..||+++|+.+|++. +..+++.|+|+|.+|+..
T Consensus 608 ~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~--~~~v~keAA~AL~nL~~~---- 681 (2102)
T PLN03200 608 NDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN--TEAVATQSARALAALSRS---- 681 (2102)
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC--ChHHHHHHHHHHHHHHhC----
Confidence 33344455666778888888888875 556889999999999863
Q ss_pred CCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhHH
Q 015709 295 MHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQE 364 (402)
Q Consensus 295 ~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~~ 364 (402)
.+...+..+++.|+++.|+++|++.|.++++.++.+|.+++.+++ .+..+.+.+++.++.+.||+...+
T Consensus 682 ~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~~ 750 (2102)
T PLN03200 682 IKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE-VAAEALAEDIILPLTRVLREGTLE 750 (2102)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch-HHHHHHhcCcHHHHHHHHHhCChH
Confidence 344556678899999999999999999999999999999999986 556666688998998888877654
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.3e-17 Score=187.35 Aligned_cols=217 Identities=12% Similarity=0.072 Sum_probs=183.3
Q ss_pred CHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015709 146 SLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~-iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~L 224 (402)
+.|.+..+...|.+++.+ .++...+.+.||+++|+++|.++++.+|..|+|+|++++.+|+..+..+++.|++|+|+++
T Consensus 417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~L 496 (2102)
T PLN03200 417 TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQL 496 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 468899999999999955 6778899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc-----------cc
Q 015709 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ-----------LE 293 (402)
Q Consensus 225 L~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~-----------l~ 293 (402)
|++++..++..|+|||+|++.+.+..+..+.++|++++|+++|+++ +.+.|..|+++|.+|+... +.
T Consensus 497 L~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg--d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl 574 (2102)
T PLN03200 497 LETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG--GPKGQEIAAKTLTKLVRTADAATISQLTALLL 574 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 9999999999999999999987656566666899999999999986 6789999999999997421 00
Q ss_pred cCCCC---------------------cchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcH
Q 015709 294 NMHKV---------------------EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD 352 (402)
Q Consensus 294 ~~~~~---------------------~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~ 352 (402)
..++. ........|.++.|+++|.+++...++.|+.+|.+++....+..+.+-..+++.
T Consensus 575 sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIp 654 (2102)
T PLN03200 575 GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIIN 654 (2102)
T ss_pred CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHH
Confidence 00000 011112468999999999999999999999999999998766555555589999
Q ss_pred HHHHHHHHHhHH
Q 015709 353 TALERLRQQLQE 364 (402)
Q Consensus 353 ~~L~~L~~~~~~ 364 (402)
+.+..|+..-.+
T Consensus 655 PLV~LLss~~~~ 666 (2102)
T PLN03200 655 PCIKLLTNNTEA 666 (2102)
T ss_pred HHHHHHhcCChH
Confidence 999999876544
|
|
| >PF08609 Fes1: Nucleotide exchange factor Fes1; InterPro: IPR013918 Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-18 Score=141.90 Aligned_cols=89 Identities=34% Similarity=0.533 Sum_probs=70.6
Q ss_pred CChHHHHHHHhhcCCCccccchhhccCCCCHHHHHHhHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 015709 77 SSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQ 155 (402)
Q Consensus 77 ~~~~gLLkwsi~~sd~~~~~~~~~~~~~~s~e~l~~r~~~L~ea~~~l-~~~~d~~lMk~al~~L~~~~~t~e~k~~AL~ 155 (402)
++|+|||||||+||+++...... ...++.+ .|+++..++|+.+ ++|+|+++||+++++|.+++.+.|+|+.||+
T Consensus 3 ~~l~~LLkWsI~ns~~~~~~~~~-~~~~~~~----~~~~l~~~~L~~l~~~~sda~lMK~a~~vl~~~~~t~edk~~Ald 77 (92)
T PF08609_consen 3 PNLNGLLKWSIENSTTSASDAPP-SAEQPDE----ERRQLDPEALDALFGGPSDAELMKEAMEVLEDPEVTLEDKLIALD 77 (92)
T ss_pred HHHHHHHHHHHHcCCCCcccccc-CcCCchh----hhhhccHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 57999999999999544422111 1122222 2566777777665 6999999999999999999999999999999
Q ss_pred HHHHccCCCCchhHH
Q 015709 156 ELLILVEPIDNANDL 170 (402)
Q Consensus 156 ~L~~Lve~iDnA~~l 170 (402)
+|++|||+|||||++
T Consensus 78 ~le~LVE~IDNANnl 92 (92)
T PF08609_consen 78 NLEELVENIDNANNL 92 (92)
T ss_pred HHHHHHHcccccccC
Confidence 999999999999985
|
Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity []. |
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-17 Score=160.64 Aligned_cols=204 Identities=18% Similarity=0.230 Sum_probs=169.2
Q ss_pred HHHHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC
Q 015709 151 QRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF 229 (402)
Q Consensus 151 ~~AL~~L~~Lve~i-DnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~ 229 (402)
..|-..|-++..-. +-....++.|++|.++++|.+++.+||.+|.|+||+++-..+.+++.+++.|++.+|+.++.+..
T Consensus 133 fEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~ 212 (526)
T COG5064 133 FEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA 212 (526)
T ss_pred HHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc
Confidence 35556666655443 44567788999999999999999999999999999999999999999999999999999999876
Q ss_pred H--HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCC
Q 015709 230 V--EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 307 (402)
Q Consensus 230 ~--~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g 307 (402)
. ++...+.|.|||++|+..|.-..=.-.-.++.|..++.+. |+.+-..|+|+|+||.. ...+....+.+.|
T Consensus 213 ~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~--D~evlvDA~WAiSYlsD-----g~~E~i~avld~g 285 (526)
T COG5064 213 IHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSR--DPEVLVDACWAISYLSD-----GPNEKIQAVLDVG 285 (526)
T ss_pred chHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHhcc-----CcHHHHHHHHhcC
Confidence 5 5678999999999999433222222245789999999986 67789999999999984 4567788899999
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHh
Q 015709 308 FLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQL 362 (402)
Q Consensus 308 ~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~ 362 (402)
..+.|+++|.+++..++..+++.+.+++..+....+++- .||..+.+..|-+.-
T Consensus 286 ~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI-~~G~L~a~~~lLs~~ 339 (526)
T COG5064 286 IPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVII-NCGALKAFRSLLSSP 339 (526)
T ss_pred CcHHHHHHhcCccccccCHHHHhhcCeeecCccceehhe-ecccHHHHHHHhcCh
Confidence 999999999999999999999999999998876666666 788877766664433
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=142.90 Aligned_cols=201 Identities=19% Similarity=0.240 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC--cHHHHHHhh
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMV 225 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g--~L~~Ll~LL 225 (402)
..+-.++..|..+.+.-+|.+.++..||+|.|+.+|+++++++|.+++..|++++- ....++...+.+ .+|.|+++.
T Consensus 182 rvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lm 260 (550)
T KOG4224|consen 182 RVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLM 260 (550)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999996 355777788888 899999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 305 (402)
.++++.++-.|-.||.++..+. .-+..++++|+++.++.+|+++ ..++....+++|.++.. +|-.-..+.+
T Consensus 261 d~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~--~~plilasVaCIrnisi------hplNe~lI~d 331 (550)
T KOG4224|consen 261 DDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSP--MGPLILASVACIRNISI------HPLNEVLIAD 331 (550)
T ss_pred hCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCc--chhHHHHHHHHHhhccc------ccCcccceec
Confidence 9999999999999999997654 4577788999999999999987 45577889999999975 3444556789
Q ss_pred CCcHHHHHHhhcCCCh-HHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHH
Q 015709 306 RFFLKSVVDLTASADL-DLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358 (402)
Q Consensus 306 ~g~v~~Lv~lL~~~d~-dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L 358 (402)
+|+++.||.+|..+|. ++|.+|..+|++|+..++..+.+++..+.+....+.+
T Consensus 332 agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~ 385 (550)
T KOG4224|consen 332 AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELL 385 (550)
T ss_pred ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHH
Confidence 9999999999998754 5999999999999998777888888555554444443
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.4e-15 Score=145.75 Aligned_cols=208 Identities=14% Similarity=0.158 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 227 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s 227 (402)
.-...+-.++-++.-+.+|.-.+++++|+.+|+.....+..++|..|..||.+++.- ...+..+...|++.+|.++.++
T Consensus 100 ~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLaks 178 (550)
T KOG4224|consen 100 CIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKS 178 (550)
T ss_pred hhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhccc
Confidence 344566777877888889999999999999999999999999999999999999986 6688889999999999999988
Q ss_pred CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCC
Q 015709 228 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 307 (402)
Q Consensus 228 ~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g 307 (402)
.+..++..|..||++|+ |...+++.++.+||+++|+.++++. +..+|..++.+|++++. +...+..+.+.+
T Consensus 179 kdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~--d~dvqyycttaisnIaV------d~~~Rk~Laqae 249 (550)
T KOG4224|consen 179 KDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSG--DLDVQYYCTTAISNIAV------DRRARKILAQAE 249 (550)
T ss_pred chhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccC--ChhHHHHHHHHhhhhhh------hHHHHHHHHhcc
Confidence 88899999999999997 4567888999999999999999986 56689999999999985 456777888877
Q ss_pred --cHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhHHhh
Q 015709 308 --FLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVM 366 (402)
Q Consensus 308 --~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~~l~ 366 (402)
+++.|++++..+++.++.+|..||.+|+++.+..+...+ .+++...++.||+.+-.+.
T Consensus 250 p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs~~~pli 309 (550)
T KOG4224|consen 250 PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQSPMGPLI 309 (550)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhCcchhHH
Confidence 999999999999999999999999999999877777666 8999888998877665543
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-13 Score=114.04 Aligned_cols=118 Identities=25% Similarity=0.381 Sum_probs=111.3
Q ss_pred HHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q 015709 169 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 248 (402)
Q Consensus 169 ~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~ 248 (402)
.+++.|+++.|+.+|.++++.+|..|+++|++++.++|.....+++.|++|.|+++++++++.++..|+|+|++++.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 46789999999999999999999999999999999999999999999999999999999889999999999999999988
Q ss_pred hcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015709 249 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 249 ~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~ 288 (402)
.....+...|+++.|.++++++ +.+++..+++++.+|+
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~--~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSS--NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcC--CHHHHHHHHHHHHHhh
Confidence 8888889999999999999986 6789999999999987
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.5e-12 Score=104.18 Aligned_cols=118 Identities=21% Similarity=0.229 Sum_probs=107.9
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.+++.|+++.|++++.+++..++..++++|++++.+++.....|++.|+++.|..+|.++ +++++..|++++++|+..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAAG 79 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHccC
Confidence 467899999999999998889999999999999999899999999999999999999985 688999999999999853
Q ss_pred ccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 291 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
.+.....+.+.|+++.++++|..++.++++.++.+|.+|+
T Consensus 80 -----~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 80 -----PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred -----cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 4456677788999999999999999999999999999886
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.3e-10 Score=120.64 Aligned_cols=195 Identities=17% Similarity=0.165 Sum_probs=164.4
Q ss_pred HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH
Q 015709 151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV 230 (402)
Q Consensus 151 ~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~ 230 (402)
..++--|.++.++..+-..+++.|++++|+.+|.+.+.++...+..+|..++-. ++++..+.+.|++++|++++.+++.
T Consensus 267 rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~ 345 (708)
T PF05804_consen 267 RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENE 345 (708)
T ss_pred HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCH
Confidence 356667889999999999999999999999999999999999999999999974 5689999999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHH
Q 015709 231 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 310 (402)
Q Consensus 231 ~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~ 310 (402)
.+...++..|.|+.- ++..+..++..|.++.|+.+|.++ + .+.-++.++++|+. +...+..|...+.++
T Consensus 346 ~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~--~~~val~iLy~LS~------dd~~r~~f~~TdcIp 414 (708)
T PF05804_consen 346 DLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--N--FREVALKILYNLSM------DDEARSMFAYTDCIP 414 (708)
T ss_pred HHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--c--hHHHHHHHHHHhcc------CHhhHHHHhhcchHH
Confidence 889999999999975 567799999999999999999975 2 45678999999974 456788888889999
Q ss_pred HHHHhhcC-CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHH
Q 015709 311 SVVDLTAS-ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358 (402)
Q Consensus 311 ~Lv~lL~~-~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L 358 (402)
.++++|-+ ++..+...++..+.+|+.+...+ +.+.+.+||..++++.
T Consensus 415 ~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rna-qlm~~g~gL~~L~~ra 462 (708)
T PF05804_consen 415 QLMQMLLENSEEEVQLELIALLINLALNKRNA-QLMCEGNGLQSLMKRA 462 (708)
T ss_pred HHHHHHHhCCCccccHHHHHHHHHHhcCHHHH-HHHHhcCcHHHHHHHH
Confidence 99997654 56667666777888899887644 5555467776666554
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-09 Score=112.10 Aligned_cols=205 Identities=16% Similarity=0.157 Sum_probs=168.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015709 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (402)
Q Consensus 136 al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~ 215 (402)
.+..|.+. +.|....+++.|..++...+-... .-+..+.|...|.|+++.||..+++.|+.+++++....+.+.+.
T Consensus 43 lf~~L~~~--~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTS--NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhc--ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 44455544 456667777888888887755444 33456788889999999999999999999999998888889999
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccC
Q 015709 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (402)
Q Consensus 216 g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~ 295 (402)
+.++.++.++.+++.++...|+-+|+.+..+ ++..+.++..++...|..++..+ +.-+|.++..++.+++. .
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~i~~-----~ 190 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVEIAS-----H 190 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHHHHh-----c
Confidence 9999999999999999999999999999975 56677788889999999999875 34478889999999985 3
Q ss_pred CCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHH
Q 015709 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTA 354 (402)
Q Consensus 296 ~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~ 354 (402)
+++....+.+.|+++.++..|.++|.-+|..++..|..|+... ...+-+. ..|+-+.
T Consensus 191 S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~-~g~~yL~-~~gi~~~ 247 (503)
T PF10508_consen 191 SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP-HGLQYLE-QQGIFDK 247 (503)
T ss_pred CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh-hHHHHHH-hCCHHHH
Confidence 5677788889999999999999999999999999999999954 4455555 4454333
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.18 E-value=7e-10 Score=107.25 Aligned_cols=172 Identities=17% Similarity=0.172 Sum_probs=135.0
Q ss_pred HhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015709 171 SKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 249 (402)
Q Consensus 171 ~~lGgl~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~ 249 (402)
...+.++.|+.+|+ +.+|.|+..|..++|+.+. .|.+|+.+.+.|+++.+..+++++++.+|.+|++||.++..+ .+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hh
Confidence 44567889999996 5789999999999999875 789999999999999999999999999999999999999765 44
Q ss_pred cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHH
Q 015709 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALA 329 (402)
Q Consensus 250 ~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~ 329 (402)
++..+. .-+-.++..+..++ .+..+|..++.+|.+|+. ..+....+. +.++.++.+|.+++..++.+++.
T Consensus 87 n~~~Ik-~~i~~Vc~~~~s~~-lns~~Q~agLrlL~nLtv------~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk 156 (254)
T PF04826_consen 87 NQEQIK-MYIPQVCEETVSSP-LNSEVQLAGLRLLTNLTV------TNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLK 156 (254)
T ss_pred hHHHHH-HHHHHHHHHHhcCC-CCCHHHHHHHHHHHccCC------CcchhhhHH--hhHHHHHHHHHcCChHHHHHHHH
Confidence 555543 33444444444443 356689999999999974 233344443 47999999999999999999999
Q ss_pred HHHHHhcCChhhHHHHHhcCCcHHHH
Q 015709 330 AIKNLLQLRTTEALVLKDFCGLDTAL 355 (402)
Q Consensus 330 aL~~L~~~~~~~~~~~~~~~GL~~~L 355 (402)
+|.+|++.+...++.+. ..++...+
T Consensus 157 ~L~nLS~np~~~~~Ll~-~q~~~~~~ 181 (254)
T PF04826_consen 157 VLVNLSENPDMTRELLS-AQVLSSFL 181 (254)
T ss_pred HHHHhccCHHHHHHHHh-ccchhHHH
Confidence 99999998866666665 44444443
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-09 Score=106.70 Aligned_cols=175 Identities=19% Similarity=0.152 Sum_probs=141.9
Q ss_pred HHHccCCCCchhHHHhcCCHHHHHHhc--CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHH
Q 015709 157 LLILVEPIDNANDLSKLGGLSVLVGQL--NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAV 234 (402)
Q Consensus 157 L~~Lve~iDnA~~l~~lGgl~~Li~lL--~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~ 234 (402)
.-+.++..+..-++.++ +...-+ .+.+.+=+..|..-|-..+.+ -+....++..||+.+++..+++++.++|.
T Consensus 68 ~k~~~~~~~~~~~~~~~----~~~~~~~~~s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~ 142 (342)
T KOG2160|consen 68 QKDFVEDMKVISDVMSM----IPIVILNSSSVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRE 142 (342)
T ss_pred hhhhcccchhHHHHHHh----hhhhccCcccCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHH
Confidence 34556666666666666 223333 345677788999999999975 44667789999999999999999999999
Q ss_pred HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHH
Q 015709 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 314 (402)
Q Consensus 235 kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~ 314 (402)
+|++.|+.+++|||..|..+++.||.+.|..+|.++ .+..+|.||++++++|+.+ ++.....|...+....|..
T Consensus 143 ~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~-~~~~~r~kaL~AissLIRn-----~~~g~~~fl~~~G~~~L~~ 216 (342)
T KOG2160|consen 143 LAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD-DPNTVRTKALFAISSLIRN-----NKPGQDEFLKLNGYQVLRD 216 (342)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC-CCchHHHHHHHHHHHHHhc-----CcHHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999976 4667899999999999974 4555555666666899999
Q ss_pred hhcC--CChHHHHHHHHHHHHHhcCChhhH
Q 015709 315 LTAS--ADLDLQEKALAAIKNLLQLRTTEA 342 (402)
Q Consensus 315 lL~~--~d~dv~E~aL~aL~~L~~~~~~~~ 342 (402)
+|.+ .+..++.+++..+..|++......
T Consensus 217 vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~ 246 (342)
T KOG2160|consen 217 VLQSNNTSVKLKRKALFLLSLLLQEDKSDE 246 (342)
T ss_pred HHHcCCcchHHHHHHHHHHHHHHHhhhhhh
Confidence 9998 578899999999999987654333
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6e-08 Score=95.69 Aligned_cols=189 Identities=12% Similarity=0.103 Sum_probs=142.8
Q ss_pred HHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC-CCHHHH---HHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 150 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH-PDTDIR---KISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 150 k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s-~~~~Ir---~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
...++-.|.-+.=.-+....+...||+..|+.++.+ ++.+.| ..+++.|..++ .|+.++..+++.|+++.++.++
T Consensus 259 L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~ 337 (461)
T KOG4199|consen 259 LVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLA 337 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHH
Confidence 333333333333334456677789999999999965 556666 55666677777 4677999999999999999887
Q ss_pred c--CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhH
Q 015709 226 K--SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 303 (402)
Q Consensus 226 ~--s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l 303 (402)
. ++++.+...++.+||-++--.|.....|++.||-...++.++.....-.+|++|+|+|.|++.. ..+++..+
T Consensus 338 ~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-----s~~~~~~~ 412 (461)
T KOG4199|consen 338 LRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-----SAENRTIL 412 (461)
T ss_pred HHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-----hhhccchH
Confidence 6 3557788888888988877788999999999999999999996544567999999999999964 34556666
Q ss_pred HhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015709 304 RDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK 346 (402)
Q Consensus 304 ~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~ 346 (402)
...| ++.|+..-+..+.++...+-.||.-|-++. ..|..|.
T Consensus 413 l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc~v-~lre~wt 453 (461)
T KOG4199|consen 413 LANG-IEKLIRTAKANHETCEAAAKAALRDLGCDV-YLREEWT 453 (461)
T ss_pred Hhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCcch-hhHHHhc
Confidence 6655 677777777888888888888888887664 3455553
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-07 Score=93.12 Aligned_cols=216 Identities=13% Similarity=0.114 Sum_probs=170.4
Q ss_pred HhhcCCCCHHHHHHHHHHHHHccCCC----------CchhHHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChH
Q 015709 139 DLNNSTLSLEDSQRALQELLILVEPI----------DNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPL 207 (402)
Q Consensus 139 ~L~~~~~t~e~k~~AL~~L~~Lve~i----------DnA~~l~~lGgl~~Li~lL~s-~~~~Ir~~Aa~vLg~~aqNNp~ 207 (402)
+|+..+.+ +.--.+.+.|.-++-+- ..|+.|.+.||+..|+..|.. -+|++...++-.|++++-+|+.
T Consensus 197 ~l~~~gk~-~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~ 275 (461)
T KOG4199|consen 197 VLNREGKT-RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEI 275 (461)
T ss_pred HHcccCcc-HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHH
Confidence 45555544 33334566666665433 468999999999999999954 5799999999999999998887
Q ss_pred hHHHHHHcCcHHHHHHhhcCCC-HHHH---HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015709 208 VQKQVLELGALSKLMKMVKSSF-VEEA---VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 283 (402)
Q Consensus 208 ~Q~~~le~g~L~~Ll~LL~s~~-~~vr---~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~l 283 (402)
||. +.+.||+..|+.++.+.+ ...| ..++..|+.+. ++......+++.||.+.|+.++-...+++.+...++..
T Consensus 276 C~~-I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~ 353 (461)
T KOG4199|consen 276 CKS-IAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAI 353 (461)
T ss_pred HHH-HHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHH
Confidence 765 789999999999999865 3444 45666677665 66788999999999999999987666688899999999
Q ss_pred HHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC--ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHH
Q 015709 284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ 361 (402)
Q Consensus 284 L~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~ 361 (402)
++-||-- .|+....+++.|.-...++.++.- ...+|..+.+++.+++..+.+.+..+- ..|++.++..=+..
T Consensus 354 i~~l~LR-----~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l-~~GiE~Li~~A~~~ 427 (461)
T KOG4199|consen 354 ISILCLR-----SPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL-ANGIEKLIRTAKAN 427 (461)
T ss_pred HHHHHhc-----CcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH-hccHHHHHHHHHhc
Confidence 9999853 567777889999999999988753 678999999999999998877777666 78888877765554
Q ss_pred hH
Q 015709 362 LQ 363 (402)
Q Consensus 362 ~~ 363 (402)
++
T Consensus 428 h~ 429 (461)
T KOG4199|consen 428 HE 429 (461)
T ss_pred Cc
Confidence 44
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.9e-08 Score=93.02 Aligned_cols=193 Identities=19% Similarity=0.141 Sum_probs=153.8
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 209 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q 209 (402)
++-+++++..|.... ++.-+..|+-.+.......-+-.-+.+.||++.+..+|+++++.+|..|.+++.+++.+ .+.|
T Consensus 11 ~~~l~~Ll~lL~~t~-dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~ 88 (254)
T PF04826_consen 11 AQELQKLLCLLESTE-DPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DENQ 88 (254)
T ss_pred HHHHHHHHHHHhcCC-ChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhH
Confidence 344566667776543 55677777778887766666777788899999999999999999999999999999865 5677
Q ss_pred HHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015709 210 KQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (402)
Q Consensus 210 ~~~le~g~L~~Ll~LL~s~--~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L 287 (402)
..+-. .++.+++...+. +.+++..++.+|.+|...+ ..+..+ .+.++.+..+|.++ +.++|..++.+|.+|
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l--~~~i~~ll~LL~~G--~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHML--ANYIPDLLSLLSSG--SEKTKVQVLKVLVNL 161 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhH--HhhHHHHHHHHHcC--ChHHHHHHHHHHHHh
Confidence 76643 588888866654 3578899999999997653 334444 45799999999986 567899999999999
Q ss_pred hhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHhcC
Q 015709 288 AKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~ 337 (402)
+. ++.....+....++..++.++... +.++...++..+.++...
T Consensus 162 S~------np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 162 SE------NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cc------CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 74 678888888889999999999886 788899999999888654
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.94 E-value=2e-08 Score=99.65 Aligned_cols=222 Identities=22% Similarity=0.283 Sum_probs=158.2
Q ss_pred CHHHHHHHHHHHHHccCC-CCchhHHHhcC------CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcH
Q 015709 146 SLEDSQRALQELLILVEP-IDNANDLSKLG------GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 218 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~-iDnA~~l~~lG------gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L 218 (402)
..+-..-.|--+.+++.+ .....-|.... -+.++++++.+++.-|+..|+.+++.+....+....... .+.+
T Consensus 70 ~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l 148 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEAL 148 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHH
Confidence 345566667777776654 45666666633 489999999999999999999999999987665554433 4677
Q ss_pred HHHHHhhcCCC----HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh-----cCCCccHHHHHHHHHHHHHHhh
Q 015709 219 SKLMKMVKSSF----VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL-----GNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 219 ~~Ll~LL~s~~----~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL-----~s~~~d~klq~kA~~lL~~L~~ 289 (402)
+.+++.+++.. .+++.-|+.++++++| .+..+..|.+.||++.|..++ .+.+.+..++-.+++++.-|..
T Consensus 149 ~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF 227 (312)
T PF03224_consen 149 PKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF 227 (312)
T ss_dssp HHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc
Confidence 88888888632 3456889999999997 478899999999999999999 3344678899999999998875
Q ss_pred cccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHhcCCh--hhHHHHHhcCCcHHHHHHHHHHhHHhh
Q 015709 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRT--TEALVLKDFCGLDTALERLRQQLQEVM 366 (402)
Q Consensus 290 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~~--~~~~~~~~~~GL~~~L~~L~~~~~~l~ 366 (402)
++...+.+.+.++++.|+++++.. ...+..-++.++.+|+.... ....++ .+|+.+.++.|..+- .
T Consensus 228 ------~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv--~~~~l~~l~~L~~rk---~ 296 (312)
T PF03224_consen 228 ------EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMV--LCGLLKTLQNLSERK---W 296 (312)
T ss_dssp ------SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHH--HH-HHHHHHHHHSS-----
T ss_pred ------CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHH--HccHHHHHHHHhcCC---C
Confidence 467778888899999999999865 67899999999999999876 344444 588888888874421 1
Q ss_pred hhhhHhhhHHHHHHHHH
Q 015709 367 LEEDQRDYAMDVEALRR 383 (402)
Q Consensus 367 ~~e~~~~y~~~l~~~~~ 383 (402)
.+| |-.+|++.+.+
T Consensus 297 ~De---dl~edl~~L~e 310 (312)
T PF03224_consen 297 SDE---DLTEDLEFLKE 310 (312)
T ss_dssp SSH---HHHHHHHHHHH
T ss_pred CCH---HHHHHHHHHHh
Confidence 233 34456655554
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-07 Score=98.55 Aligned_cols=194 Identities=18% Similarity=0.156 Sum_probs=158.9
Q ss_pred HHHHHHHHHcCCCC-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCch-hHHHhcCCHHHHHHhcCCCCHHHHH
Q 015709 115 MEIKELMEKLKTPS-DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA-NDLSKLGGLSVLVGQLNHPDTDIRK 192 (402)
Q Consensus 115 ~~L~ea~~~l~~~~-d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA-~~l~~lGgl~~Li~lL~s~~~~Ir~ 192 (402)
+-|+..++.+...+ ....+..+..-|.++ ++..|.-++..+..+++..+.+ .-+...+.++.++.+|.+++.++..
T Consensus 60 ~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~--~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~ 137 (503)
T PF10508_consen 60 DILKRLLSALSPDSLLPQYQPFLQRGLTHP--SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAK 137 (503)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHH
Confidence 34555555443222 244555555556655 4578888999999988877664 4566688899999999999999999
Q ss_pred HHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCc
Q 015709 193 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF 272 (402)
Q Consensus 193 ~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~ 272 (402)
.|+.+|..++.+.+.. +.++..+.++.|..++...+..+|.+++..+..+..+++...+...+.|.++.++..|+++
T Consensus 138 ~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d-- 214 (503)
T PF10508_consen 138 AAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD-- 214 (503)
T ss_pred HHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc--
Confidence 9999999999876544 5677888899999999987888899999999999999999999999999999999999984
Q ss_pred cHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC
Q 015709 273 EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA 319 (402)
Q Consensus 273 d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~ 319 (402)
|+-+|..++-+++.|+. .+.....+.+.|+++.|++++...
T Consensus 215 DiLvqlnalell~~La~------~~~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 215 DILVQLNALELLSELAE------TPHGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred cHHHHHHHHHHHHHHHc------ChhHHHHHHhCCHHHHHHHHHhcc
Confidence 88899999999999985 456688999999999999999765
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.5e-08 Score=102.51 Aligned_cols=171 Identities=13% Similarity=0.110 Sum_probs=136.0
Q ss_pred CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015709 164 IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 243 (402)
Q Consensus 164 iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~L 243 (402)
++++..+-..-....+....-..+.+.+..|+-|+-+++..-...+.-+-...+..+|++++..++..+...++.||.|+
T Consensus 367 i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~Nl 446 (678)
T KOG1293|consen 367 ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNL 446 (678)
T ss_pred hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHH
Confidence 77777766554444444444567899999999999888865444444433456899999999887788999999999999
Q ss_pred hcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHH
Q 015709 244 IRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDL 323 (402)
Q Consensus 244 iR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv 323 (402)
+-.+.+-+..|+..||++.|...+.++ ++.+|.++.|+++++..+ .++..+..+...-....++.+.+.+|..+
T Consensus 447 Vmefs~~kskfl~~ngId~l~s~~~~~--~~n~r~~~~~~Lr~l~f~----~de~~k~~~~~ki~a~~i~~l~nd~d~~V 520 (678)
T KOG1293|consen 447 VMEFSNLKSKFLRNNGIDILESMLTDP--DFNSRANSLWVLRHLMFN----CDEEEKFQLLAKIPANLILDLINDPDWAV 520 (678)
T ss_pred HhhcccHHHHHHHcCcHHHHHHHhcCC--CchHHHHHHHHHHHHHhc----chHHHHHHHHHHhhHHHHHHHHhCCCHHH
Confidence 999999999999999999999999986 667899999999999974 34444444445555667788888899999
Q ss_pred HHHHHHHHHHHhcCChh
Q 015709 324 QEKALAAIKNLLQLRTT 340 (402)
Q Consensus 324 ~E~aL~aL~~L~~~~~~ 340 (402)
||+++..|.+|++...+
T Consensus 521 qeq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 521 QEQCFQLLRNLTCNSRK 537 (678)
T ss_pred HHHHHHHHHHhhcCcHH
Confidence 99999999999998543
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.4e-07 Score=98.70 Aligned_cols=240 Identities=16% Similarity=0.155 Sum_probs=178.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhH-----HHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHH
Q 015709 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAND-----LSKLGGLSVLVGQLNH-PDTDIRKISAWILGK 200 (402)
Q Consensus 127 ~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~-----l~~lGgl~~Li~lL~s-~~~~Ir~~Aa~vLg~ 200 (402)
.+.--.||+++.-|.+.+ ++-..+.|+-+|.+.+ -+.|. |----.+|.|+.+|++ .+.+|...||++|.+
T Consensus 163 ~sasSk~kkLL~gL~~~~-Des~Qleal~Elce~L---~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRalty 238 (1051)
T KOG0168|consen 163 SSASSKAKKLLQGLQAES-DESQQLEALTELCEML---SMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTY 238 (1051)
T ss_pred ccchHHHHHHHHhccccC-ChHHHHHHHHHHHHHH---hhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 344568999999988875 5555655655554433 22222 1112257788999987 579999999999999
Q ss_pred HhcCChHhHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHH
Q 015709 201 ASQNNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK 279 (402)
Q Consensus 201 ~aqNNp~~Q~~~le~g~L~~Ll~LL~-s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~k 279 (402)
++.--|.+-..++++++||.|+.-|. -+-..+.+.++.||=-|-|.++. +++++||+...+..|.=- ...+|++
T Consensus 239 l~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFF--Si~aQR~ 313 (1051)
T KOG0168|consen 239 LCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFF--SIHAQRV 313 (1051)
T ss_pred HHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHH--HHHHHHH
Confidence 99999999999999999999996554 44578899999999999999886 778899999999888743 4568999
Q ss_pred HHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHH
Q 015709 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (402)
Q Consensus 280 A~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~ 359 (402)
|+....|.|.+ ..++....+. ..+|.|..+|...|..+.|.++.++..++.......+++.+-|.. .+++..+
T Consensus 314 AlaiaaN~Cks----i~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~-dLi~~~~ 386 (1051)
T KOG0168|consen 314 ALAIAANCCKS----IRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSH-DLITNIQ 386 (1051)
T ss_pred HHHHHHHHHhc----CCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhch-hHHHHHH
Confidence 99999999974 3555555664 479999999999999999999999999998765566666655443 2345544
Q ss_pred HHhHHhhhhhhHhhhHHHHHHHH
Q 015709 360 QQLQEVMLEEDQRDYAMDVEALR 382 (402)
Q Consensus 360 ~~~~~l~~~e~~~~y~~~l~~~~ 382 (402)
+.+.--..--.+..|+.++--+.
T Consensus 387 qLlsvt~t~Ls~~~~~~vIrmls 409 (1051)
T KOG0168|consen 387 QLLSVTPTILSNGTYTGVIRMLS 409 (1051)
T ss_pred HHHhcCcccccccchhHHHHHHH
Confidence 44433223445778887764444
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-06 Score=95.23 Aligned_cols=205 Identities=19% Similarity=0.162 Sum_probs=163.7
Q ss_pred HHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC
Q 015709 150 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS 228 (402)
Q Consensus 150 k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~ 228 (402)
...++.-+.++..+..||..++.-||++.|+... +..++- -..+|.|++++.+..|..|.+ .+..|+.++.++
T Consensus 429 ~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~~--~i~~L~~~v~~~ 502 (708)
T PF05804_consen 429 QLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFVD--FIGDLAKIVSSG 502 (708)
T ss_pred cHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHHH--HHHHHHHHhhcC
Confidence 4456666778888899999999999999999865 555543 357999999999889988875 799999999876
Q ss_pred C-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCC
Q 015709 229 F-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 307 (402)
Q Consensus 229 ~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g 307 (402)
+ .+....++..|+|+.-.+....+.+.+++-++.|...|..+..+..+...++-+++.++. ++.....+.+.|
T Consensus 503 ~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~------d~~~A~lL~~sg 576 (708)
T PF05804_consen 503 DSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS------DPECAPLLAKSG 576 (708)
T ss_pred CcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC------CHHHHHHHHhCC
Confidence 5 577899999999998765554555557899999999998765555688899999999884 567788888999
Q ss_pred cHHHHHHhhcCC--ChHHHHHHHHHHHHHhcCChhhHHHHHhcCC-cHHHHHHHHHHhHHhhh
Q 015709 308 FLKSVVDLTASA--DLDLQEKALAAIKNLLQLRTTEALVLKDFCG-LDTALERLRQQLQEVML 367 (402)
Q Consensus 308 ~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~G-L~~~L~~L~~~~~~l~~ 367 (402)
+++.|+++|+.. |.++.-+.+.++.+++.+.+ .|+.+-...+ ..-.+..++..+.++.+
T Consensus 577 li~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~-tr~~ll~~~~~~~ylidL~~d~N~~ir~ 638 (708)
T PF05804_consen 577 LIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE-TREVLLKETEIPAYLIDLMHDKNAEIRK 638 (708)
T ss_pred hHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH-HHHHHHhccchHHHHHHHhcCCCHHHHH
Confidence 999999999865 88999999999999999975 5665543444 44567777777776543
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.2e-07 Score=99.80 Aligned_cols=212 Identities=17% Similarity=0.177 Sum_probs=156.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh--cHHH
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA--GQEM 253 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~--~~~~ 253 (402)
+|-.+.+|.+.++.++..|+.-+-.++-.+.+++..+.+.|+|++|+.+|.+...+++..|++||-|++-+... +.-+
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla 314 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA 314 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence 56778999999999999999999999999999999999999999999999999999999999999999988666 7888
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcC--------------C
Q 015709 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--------------A 319 (402)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~--------------~ 319 (402)
+.++||++.++++|+... |..++..+..++.||.. ....+..++. ..+..|-+-+-. .
T Consensus 315 i~~~~Gv~~l~~~Lr~t~-D~ev~e~iTg~LWNLSS------~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~ 386 (717)
T KOG1048|consen 315 IKELNGVPTLVRLLRHTQ-DDEVRELITGILWNLSS------NDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAE 386 (717)
T ss_pred hhhcCChHHHHHHHHhhc-chHHHHHHHHHHhcccc------hhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccc
Confidence 889999999999999653 55689999999999974 2223333332 334444333211 1
Q ss_pred ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHH-HHHHHHhHHhhhhhhHhhhHHHHHHHH-------HHHHHHHHH
Q 015709 320 DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTAL-ERLRQQLQEVMLEEDQRDYAMDVEALR-------REVELIFFR 391 (402)
Q Consensus 320 d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L-~~L~~~~~~l~~~e~~~~y~~~l~~~~-------~e~~~~~~~ 391 (402)
+.++--.+..+|.++.+.+.+.|+.++...||-..| -.++.-.+.-.-+....|-| ++.+| .||-.-+++
T Consensus 387 ~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENc--vCilRNLSYrl~~Evp~~~~~ 464 (717)
T KOG1048|consen 387 DSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENC--VCILRNLSYRLEAEVPPKYRQ 464 (717)
T ss_pred cceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHH--HHHHhhcCchhhhhcCHhhhh
Confidence 356778899999999998888999999877764443 33332222221133344445 33355 555555555
Q ss_pred Hhhhcc
Q 015709 392 KLDDSG 397 (402)
Q Consensus 392 ~~~~~~ 397 (402)
-+..++
T Consensus 465 ~~~~~~ 470 (717)
T KOG1048|consen 465 VLANIA 470 (717)
T ss_pred Hhhccc
Confidence 555554
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.2e-05 Score=81.23 Aligned_cols=244 Identities=16% Similarity=0.115 Sum_probs=166.2
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC-CchhHHHhc-----CCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKL-----GGLSVLVGQLNHPDTDIRKISAWILGKASQ 203 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~l~~l-----Ggl~~Li~lL~s~~~~Ir~~Aa~vLg~~aq 203 (402)
....+-.+..+.+.. ..+-..-.|--+.+++... ..+.-|++. .-+.+++.+|++++.-|...|+.+++.+++
T Consensus 52 ~~y~~~~l~ll~~~~-~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQID-KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHh
Confidence 556666666666543 3354555555566666443 345667765 468899999999999999999999999987
Q ss_pred CChHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015709 204 NNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 204 NNp~~Q~~~le~g~L~~Ll~LL~s~-~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
..+.........-.+.-|...+++. +...+.-++.+++.++|. +..+..|.+.+|++.|..+|+....+..++-.+++
T Consensus 131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 6543222211111334455566553 345677788999999986 56678899999999999999875446788999999
Q ss_pred HHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHhcCCh------h-hHHHHHhcCCcHHH
Q 015709 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRT------T-EALVLKDFCGLDTA 354 (402)
Q Consensus 283 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~~------~-~~~~~~~~~GL~~~ 354 (402)
++.-|..+ +...+.+...++++.++++++.. -..+...++.++.+|+..+. . +..++ .+|+.+.
T Consensus 210 ~lWlLSF~------~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv--~~~l~~~ 281 (429)
T cd00256 210 CIWLLTFN------PHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMV--QCKVLKT 281 (429)
T ss_pred HHHHHhcc------HHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHH--HcChHHH
Confidence 99988753 34555667789999999999865 66788888889999998531 1 22233 4788777
Q ss_pred HHHHHHHhHHhhhhhhHhhhHHHHHHHHHHHHHHH
Q 015709 355 LERLRQQLQEVMLEEDQRDYAMDVEALRREVELIF 389 (402)
Q Consensus 355 L~~L~~~~~~l~~~e~~~~y~~~l~~~~~e~~~~~ 389 (402)
+..|+.+- ..++ |-.+||+.+.+..+..+
T Consensus 282 l~~L~~rk---~~De---dL~edl~~L~e~L~~~~ 310 (429)
T cd00256 282 LQSLEQRK---YDDE---DLTDDLKFLTEELKNSV 310 (429)
T ss_pred HHHHhcCC---CCcH---HHHHHHHHHHHHHHHHH
Confidence 77763221 1233 34556777776666664
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.7e-05 Score=85.43 Aligned_cols=202 Identities=21% Similarity=0.232 Sum_probs=160.5
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC------c-----------hhHHHhc-CCHHHHHHhcCCCCHHHHH
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID------N-----------ANDLSKL-GGLSVLVGQLNHPDTDIRK 192 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD------n-----------A~~l~~l-Ggl~~Li~lL~s~~~~Ir~ 192 (402)
.-||-.+.+|.+.-.++|-...+|+.+..++..-| + |..|++. +-+..|+.++...+-.||.
T Consensus 61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~ 140 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRL 140 (970)
T ss_pred cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhh
Confidence 44888888888877777888888888888775443 2 3445554 4567788899999999999
Q ss_pred HHHHHHHHHhcCC-hHhHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015709 193 ISAWILGKASQNN-PLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (402)
Q Consensus 193 ~Aa~vLg~~aqNN-p~~Q~~~le~-g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (402)
+|...|.++..+- +++|++++.. -+|.+|+.+|.+.-..+|-.|++-|+.++|+|+..|+.+.=.|.+.-|..++...
T Consensus 141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeE 220 (970)
T KOG0946|consen 141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEE 220 (970)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999988764 5699998876 5899999999987788999999999999999988888777789999999999753
Q ss_pred C--ccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC---C----------hHHHHHHHHHHHHHh
Q 015709 271 S--FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA---D----------LDLQEKALAAIKNLL 335 (402)
Q Consensus 271 ~--~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~---d----------~dv~E~aL~aL~~L~ 335 (402)
. +.--+...++.++.+|.. .+.+....|.+.+.++.|.++|..+ | ....-.+|.++..|+
T Consensus 221 Gg~dGgIVveDCL~ll~NLLK-----~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lV 295 (970)
T KOG0946|consen 221 GGLDGGIVVEDCLILLNNLLK-----NNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLV 295 (970)
T ss_pred CCCCCcchHHHHHHHHHHHHh-----hCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhc
Confidence 2 122378899999999995 4778889999999999999998753 2 122345677777777
Q ss_pred cC
Q 015709 336 QL 337 (402)
Q Consensus 336 ~~ 337 (402)
.-
T Consensus 296 sP 297 (970)
T KOG0946|consen 296 SP 297 (970)
T ss_pred CC
Confidence 64
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=3e-05 Score=76.20 Aligned_cols=168 Identities=11% Similarity=0.033 Sum_probs=86.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~ 212 (402)
++.+++.|.+. +...+..|...|..+=. -..++.+..+++++++.+|..|+++||.+.... ..+.
T Consensus 25 ~~~L~~~L~d~--d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~~~-- 89 (280)
T PRK09687 25 DDELFRLLDDH--NSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK-RCQD-- 89 (280)
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cchH--
Confidence 44455555544 33456666555543211 123555666667777777777777777764211 1111
Q ss_pred HHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhcHHHHH--------------------------hcCcHHHHHH
Q 015709 213 LELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEMFY--------------------------VEAGDLMLQD 265 (402)
Q Consensus 213 le~g~L~~Ll~L-L~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~--------------------------~~gGi~~L~~ 265 (402)
..++.|..+ ++++++.||..|+.+|+.+..........++ ....++.|+.
T Consensus 90 ---~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~ 166 (280)
T PRK09687 90 ---NVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLIN 166 (280)
T ss_pred ---HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 234555555 3444456666666666665322110000000 0114455555
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 266 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 266 lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
+|+++ +..+|..|++.|..+... ....++.|+.+|..++.+++..|+.+|..+
T Consensus 167 ~L~d~--~~~VR~~A~~aLg~~~~~--------------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 167 LLKDP--NGDVRNWAAFALNSNKYD--------------NPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HhcCC--CHHHHHHHHHHHhcCCCC--------------CHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 55554 334566666655554210 124566677777777777777777766664
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.1e-05 Score=75.90 Aligned_cols=185 Identities=17% Similarity=0.147 Sum_probs=119.3
Q ss_pred hcCCCCHHHHHHHHHHHHHccCCC---CchhHHHh-c-CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015709 141 NNSTLSLEDSQRALQELLILVEPI---DNANDLSK-L-GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (402)
Q Consensus 141 ~~~~~t~e~k~~AL~~L~~Lve~i---DnA~~l~~-l-Ggl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~ 215 (402)
.+.+.+=+.+..|+..|..++... +....+.. + ..+..++..+++....|-..|+.+++.++..-...-+.+. .
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~ 93 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-D 93 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-H
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-H
Confidence 455567789999999999988654 44444433 2 3455777788888889999999999999986443333332 2
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccC
Q 015709 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (402)
Q Consensus 216 g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~ 295 (402)
..+|.|++.+.+.+..++..|..+|-.++.+.+..... -...+...++++ ++++|..++..+..++..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~----- 161 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSK--NPQVREECAEWLAIILEK----- 161 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S---HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCC--CHHHHHHHHHHHHHHHHH-----
Confidence 47899999999988889999999999999986611111 034556666665 688999999999988753
Q ss_pred CCCcchhHHh----CCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 296 HKVEPPLFRD----RFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 296 ~~~~~~~l~~----~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
.+.....+.. ..+++.+..++...++++|+.|-.++..+...-
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 2211222222 347888888999999999999999999997653
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-05 Score=77.25 Aligned_cols=103 Identities=13% Similarity=0.096 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHH
Q 015709 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 265 (402)
Q Consensus 187 ~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s-~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~ 265 (402)
+......|..+|--++-.+|.+|..|....++..|+.+|+. .++.++..++.+|.++..++|.++..|.+.||+..+..
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS 183 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence 44467889999999999999999999999999999999954 45788999999999999999999999999999999999
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhh
Q 015709 266 ILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 266 lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
++++.+.+..+|.|.+-+++-.+.
T Consensus 184 llk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HHccccccHHHhHHHHHHHHHHHc
Confidence 999988888899999887775553
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.4e-05 Score=75.02 Aligned_cols=156 Identities=13% Similarity=0.058 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHh-cCCCCHHHHHHHHHHHHHHhcC-------------------C
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQ-LNHPDTDIRKISAWILGKASQN-------------------N 205 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~l-L~s~~~~Ir~~Aa~vLg~~aqN-------------------N 205 (402)
++..|..|...|.++-..-. . .--.++.|..+ ++.+++.||..|+.+||.+... +
T Consensus 67 d~~vR~~A~~aLg~lg~~~~-~----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKR-C----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCcc-c----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCC
Confidence 34556666666655432110 0 01134455544 4556666666666666665321 2
Q ss_pred hHhHHHHHHc-------CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHH
Q 015709 206 PLVQKQVLEL-------GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHR 278 (402)
Q Consensus 206 p~~Q~~~le~-------g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~ 278 (402)
+.++..++.. .+++.|+.++++++..+|..|+++|+.+--+++ ..++.|+.+|.++ +..+|.
T Consensus 142 ~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~--~~~VR~ 210 (280)
T PRK09687 142 TNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK--NEEIRI 210 (280)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC--ChHHHH
Confidence 2233332221 368899999998888899999999998822222 4678899999876 566899
Q ss_pred HHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 279 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 279 kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
.|++.|..+- +..+++.|++.|..++ ++..++.||..+-
T Consensus 211 ~A~~aLg~~~----------------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 211 EAIIGLALRK----------------DKRVLSVLIKELKKGT--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHHHccC----------------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence 9999988752 2358899999999876 5666776666664
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.6e-06 Score=58.38 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=38.5
Q ss_pred ChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 015709 205 NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR 245 (402)
Q Consensus 205 Np~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR 245 (402)
||+.++.+++.|++|+|+++|++.+..++..|+|||+||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 57889999999999999999999999999999999999975
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.3e-05 Score=85.93 Aligned_cols=211 Identities=15% Similarity=0.120 Sum_probs=155.5
Q ss_pred HHHHHHHcc-CCCCchhHHHhcCC-HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHh-HHHHHHcCcHHHHHHhhcC-C
Q 015709 153 ALQELLILV-EPIDNANDLSKLGG-LSVLVGQLNHPDTDIRKISAWILGKASQNNPLV-QKQVLELGALSKLMKMVKS-S 228 (402)
Q Consensus 153 AL~~L~~Lv-e~iDnA~~l~~lGg-l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~-Q~~~le~g~L~~Ll~LL~s-~ 228 (402)
|+-.|-+|. -++.|...|+...| +..||..|.+...++..--+.||.|+.=+-... .+.+.+.|-+..|....-. .
T Consensus 371 a~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~ 450 (2195)
T KOG2122|consen 371 AGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNK 450 (2195)
T ss_pred HHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhc
Confidence 344444544 45667778888755 778999999988899999999999998765443 4445577888888866543 3
Q ss_pred CHHHHHHHHHHHHHHhcCChhcHHHHHh-cCcHHHHHHhhcCC--CccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh
Q 015709 229 FVEEAVKALYTVSSLIRNNLAGQEMFYV-EAGDLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (402)
Q Consensus 229 ~~~vr~kAl~ALS~LiR~~~~~~~~f~~-~gGi~~L~~lL~s~--~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 305 (402)
....-+..|.||=||..|+..+...|+. -|.+.+|+..|... ....++...|-..|.|..... ...+..++.+++
T Consensus 451 kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~I--At~E~yRQILR~ 528 (2195)
T KOG2122|consen 451 KESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLI--ATCEDYRQILRR 528 (2195)
T ss_pred ccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHh--hccchHHHHHHH
Confidence 3333444455555555677777888887 58899999999854 334556666666666654432 245678999999
Q ss_pred CCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhHHh
Q 015709 306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEV 365 (402)
Q Consensus 306 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~~l 365 (402)
++++..|+++|++....+...++.+|++|..-..+..+.+.+.+...-+...+++.+...
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMI 588 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMI 588 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999988888888886666655666666666654
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.4e-05 Score=82.51 Aligned_cols=116 Identities=15% Similarity=0.074 Sum_probs=104.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCC
Q 015709 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 296 (402)
Q Consensus 217 ~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~ 296 (402)
-+|..+.+|.+..+.++..|.+-|--+++++..+...+.+.|||+.|+.+|.++ ...+++.|++++.||... ..+
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~--~~evq~~acgaLRNLvf~---~~~ 308 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR--NDEVQRQACGALRNLVFG---KST 308 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC--cHHHHHHHHHHHHhhhcc---cCC
Confidence 378899999998899999999999999999999999999999999999999997 456899999999999975 234
Q ss_pred CCcchhHHhCCcHHHHHHhhcC-CChHHHHHHHHHHHHHhcC
Q 015709 297 KVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 297 ~~~~~~l~~~g~v~~Lv~lL~~-~d~dv~E~aL~aL~~L~~~ 337 (402)
.+..-.+.+.+.|+.++.+|+. .|.++++.+..+|++|.+.
T Consensus 309 ~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 309 DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 4577788899999999999997 5999999999999999987
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.6e-05 Score=63.19 Aligned_cols=87 Identities=21% Similarity=0.287 Sum_probs=69.7
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 176 LSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 176 l~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
++.|++.| +++++.+|..|+++||.+- .+ .++|.|+.+++++++.+|..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57899988 8999999999999999553 22 35899999999989999999999999761
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015709 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (402)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~ 285 (402)
....++.|..++.++. +..+|..|+..|+
T Consensus 60 -~~~~~~~L~~~l~~~~-~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDD-DEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-S-SHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCC-cHHHHHHHHhhcC
Confidence 2347888999998863 5557877877663
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.1e-05 Score=59.19 Aligned_cols=55 Identities=20% Similarity=0.394 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015709 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 243 (402)
Q Consensus 188 ~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~L 243 (402)
+.+|..|+|+||++++..+.....+. ..++|.|+.+|+++++.||..|+|||++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 57999999999999999887766644 46899999999998999999999999975
|
... |
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00071 Score=73.85 Aligned_cols=278 Identities=15% Similarity=0.115 Sum_probs=191.8
Q ss_pred CCChHHHHHHHhhcCCCccccchhhccCCC-CHHHHHHhHHHHHHHHHHcCCCCHHH----HHHHHHHH---hhcCCCCH
Q 015709 76 FSSIDGMLQWAIGHSDPAKLKETAQDVQRL-SPSELKKRQMEIKELMEKLKTPSDAQ----LIQIAIDD---LNNSTLSL 147 (402)
Q Consensus 76 ~~~~~gLLkwsi~~sd~~~~~~~~~~~~~~-s~e~l~~r~~~L~ea~~~l~~~~d~~----lMk~al~~---L~~~~~t~ 147 (402)
+|.+..+|+-.+..+...+.+---+..+.- ||- +-.+-++|.-+.+.+-++.. -|+..+.+ |-+.+...
T Consensus 150 gprv~~ll~rt~~~sasSk~kkLL~gL~~~~Des---~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~ 226 (1051)
T KOG0168|consen 150 GPRVLQLLHRTIGSSASSKAKKLLQGLQAESDES---QQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNF 226 (1051)
T ss_pred chhHHHHhhhcccccchHHHHHHHHhccccCChH---HHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccH
Confidence 455677777777776666532111111111 221 12233333333222111111 13333332 33445678
Q ss_pred HHHHHHHHHHHHccCCCC-chhHHHhcCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 148 EDSQRALQELLILVEPID-NANDLSKLGGLSVLVG-QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iD-nA~~l~~lGgl~~Li~-lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
|-...|+..|.+++|-.- ..--.+..+.+|.|+. ++.=..-++-+++..+|-.+.+.+| .++++.|+|...+..|
T Consensus 227 DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl 303 (1051)
T KOG0168|consen 227 DIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL 303 (1051)
T ss_pred HHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH
Confidence 888999999999998753 4456777899999986 5567889999999999999999988 4689999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCC-hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHH
Q 015709 226 KSSFVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~-~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~ 304 (402)
.--+..++++|+...+|+|..- +...+-| +..++.|..+|+.. |.+....++-++..++..- ...++..+.+.
T Consensus 304 DFFSi~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~lLs~~--D~k~ies~~ic~~ri~d~f--~h~~~kLdql~ 377 (1051)
T KOG0168|consen 304 DFFSIHAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTPLLSYQ--DKKPIESVCICLTRIADGF--QHGPDKLDQLC 377 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHhc--ccChHHHHHHh
Confidence 8777888999999999999884 4333333 57899999999975 5677888888888887643 34677788899
Q ss_pred hCCcHHHHHHhhcCC----ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhHHhh
Q 015709 305 DRFFLKSVVDLTASA----DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVM 366 (402)
Q Consensus 305 ~~g~v~~Lv~lL~~~----d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~~l~ 366 (402)
.+|++....+||... +..+-.-+.+.|..+++.....+..+- ..++-..|..+-++|..-.
T Consensus 378 s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~-k~~I~~~L~~il~g~s~s~ 442 (1051)
T KOG0168|consen 378 SHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLL-KLDIADTLKRILQGYSKSA 442 (1051)
T ss_pred chhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHH-HhhHHHHHHHHHhccCcCc
Confidence 999999999998765 344556667777777776544443333 5677778888777776643
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00063 Score=76.98 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=17.0
Q ss_pred CcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 307 FFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 307 g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
..++.|+.+|..++..+|..|+.+|..+
T Consensus 838 ~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 838 VAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 3445666666666666666666666554
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0014 Score=66.82 Aligned_cols=215 Identities=17% Similarity=0.152 Sum_probs=146.1
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHh------cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSK------LGGLSVLVGQLNHPDTDIRKISAWILGKASQ 203 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~l~~------lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aq 203 (402)
+..+-.+..+.... .+|...-.|--+.++.. +.--..-|+. ---|.+.+++|...+.-+...++++|+.+++
T Consensus 65 ~~v~~fi~LlS~~~-kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHID-KDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhh-hHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 45555555555433 33444444444444443 3222223332 2358999999999999999999999999998
Q ss_pred CChHh---HHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHH
Q 015709 204 NNPLV---QKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK 279 (402)
Q Consensus 204 NNp~~---Q~~~le~g~L~~Ll~LL~s-~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~k 279 (402)
+-+.. .+.-+..| .|-..+++ .++....-|+.+|..++|. ++-+..|+.++|+..|+.++.+...+..+|-.
T Consensus 144 ~g~~~~~~~e~~~~~~---~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYq 219 (442)
T KOG2759|consen 144 FGNCKMELSELDVYKG---FLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQ 219 (442)
T ss_pred hccccccchHHHHHHH---HHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHH
Confidence 64421 11222223 33334444 4556788889999999996 56688999999999999999655568899999
Q ss_pred HHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHhcCCh------h-hHHHHHhcCCc
Q 015709 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRT------T-EALVLKDFCGL 351 (402)
Q Consensus 280 A~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~~------~-~~~~~~~~~GL 351 (402)
.++++.-|.. +|...+.+...+.++.|+++++.. -..+..-++.++.++...++ . +.+++ .|++
T Consensus 220 sifciWlLtF------n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv--~~~v 291 (442)
T KOG2759|consen 220 SIFCIWLLTF------NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMV--LCKV 291 (442)
T ss_pred HHHHHHHhhc------CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH--hcCc
Confidence 9999998875 566667778889999999999865 45666666777778887763 1 12222 4777
Q ss_pred HHHHHHH
Q 015709 352 DTALERL 358 (402)
Q Consensus 352 ~~~L~~L 358 (402)
.+.+..|
T Consensus 292 ~k~l~~L 298 (442)
T KOG2759|consen 292 LKTLQSL 298 (442)
T ss_pred hHHHHHH
Confidence 6666665
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.3e-05 Score=62.95 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015709 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (402)
Q Consensus 190 Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~--~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 256 (402)
+|..-..+||+++.+|+.+|+.+.+.|+||.++..-.-+ +|-+|..|+|||-+++.+|+.+|+.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 466778999999999999999999999999999876644 4778999999999999999999987654
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00012 Score=74.83 Aligned_cols=188 Identities=15% Similarity=0.115 Sum_probs=134.8
Q ss_pred hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC----CH---HHHHHHHHHHHHHh
Q 015709 172 KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS----FV---EEAVKALYTVSSLI 244 (402)
Q Consensus 172 ~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~----~~---~vr~kAl~ALS~Li 244 (402)
..|.+++|.+..+|++.++-.+.++.+||+|..|.+.+..|.+.||-..+++.|+.. ++ +.-.-+..-|+|.+
T Consensus 85 ~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~ 164 (604)
T KOG4500|consen 85 DAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI 164 (604)
T ss_pred HHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence 357788999999999999999999999999999999999999999977777777642 22 33456778889998
Q ss_pred cCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHH
Q 015709 245 RNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDL 323 (402)
Q Consensus 245 R~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv 323 (402)
-++..-+.+..++|.++.|..++.-+..+..+..+......+|+.- ..+-..+...+..++..++.+|.+. ++|.
T Consensus 165 l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~----~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~ 240 (604)
T KOG4500|consen 165 LDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSF----VCEMLYPFCKDCSLVFMLLQLLPSMVREDI 240 (604)
T ss_pred CCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHH----HHHhhhhhhccchHHHHHHHHHHHhhccch
Confidence 8888889999999999999998875433333444444333344321 0122344556777888888988766 8899
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhHHh
Q 015709 324 QEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEV 365 (402)
Q Consensus 324 ~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~~l 365 (402)
.|.....+...+....-+ -.+. ..|+-..+..|-+++...
T Consensus 241 ~eM~feila~~aend~Vk-l~la-~~gl~e~~~~lv~~~k~~ 280 (604)
T KOG4500|consen 241 DEMIFEILAKAAENDLVK-LSLA-QNGLLEDSIDLVRNMKDF 280 (604)
T ss_pred hhHHHHHHHHHhcCccee-eehh-hcchHHHHHHHHHhcccc
Confidence 999999998888775322 2344 344544444444454443
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.8e-05 Score=54.77 Aligned_cols=38 Identities=32% Similarity=0.691 Sum_probs=35.8
Q ss_pred CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015709 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKAS 202 (402)
Q Consensus 165 DnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~a 202 (402)
++...+.+.||+|+|+++|+++++++|..|+|+|++++
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 56778999999999999999999999999999999987
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00056 Score=77.37 Aligned_cols=123 Identities=11% Similarity=0.135 Sum_probs=90.2
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH
Q 015709 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (402)
Q Consensus 174 Ggl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~ 253 (402)
+-...|+..|.++++.+|..|++.|+.+- ..+.|+.++.+++..+|..++.+|+.+-...
T Consensus 714 ~~~~~l~~~L~D~d~~VR~~Av~aL~~~~--------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~------ 773 (897)
T PRK13800 714 GDAALFAAALGDPDHRVRIEAVRALVSVD--------------DVESVAGAATDENREVRIAVAKGLATLGAGG------ 773 (897)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHhccc--------------CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc------
Confidence 34567788999999999999999999752 2245677888888899999999998774321
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHH
Q 015709 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 333 (402)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~ 333 (402)
..+++.|..+++++ ++.+|..|+.+|..+-. + ...+..+...|..+|..+|..|+.+|..
T Consensus 774 ---~~~~~~L~~ll~D~--d~~VR~aA~~aLg~~g~-------~--------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~ 833 (897)
T PRK13800 774 ---APAGDAVRALTGDP--DPLVRAAALAALAELGC-------P--------PDDVAAATAALRASAWQVRQGAARALAG 833 (897)
T ss_pred ---chhHHHHHHHhcCC--CHHHHHHHHHHHHhcCC-------c--------chhHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 12367788888876 56788888888876531 1 1123457777888888888888888877
Q ss_pred Hhc
Q 015709 334 LLQ 336 (402)
Q Consensus 334 L~~ 336 (402)
+-.
T Consensus 834 l~~ 836 (897)
T PRK13800 834 AAA 836 (897)
T ss_pred ccc
Confidence 764
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00094 Score=70.08 Aligned_cols=203 Identities=18% Similarity=0.186 Sum_probs=137.8
Q ss_pred HhHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015709 112 KRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190 (402)
Q Consensus 112 ~r~~~L~ea~~~l-~~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~I 190 (402)
+|++-+++++-.. .|.+-.......+..+. +.+.+.|.-+.-.+..+.+.-.. +..+ .+..+.+-|+++++.+
T Consensus 22 ~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~--s~~~~~Krl~yl~l~~~~~~~~~---~~~l-~~n~l~kdl~~~n~~~ 95 (526)
T PF01602_consen 22 KKKEALKKLIYLMMLGYDISFLFMEVIKLIS--SKDLELKRLGYLYLSLYLHEDPE---LLIL-IINSLQKDLNSPNPYI 95 (526)
T ss_dssp HHHHHHHHHHHHHHTT---GSTHHHHHCTCS--SSSHHHHHHHHHHHHHHTTTSHH---HHHH-HHHHHHHHHCSSSHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhcchh---HHHH-HHHHHHHhhcCCCHHH
Confidence 3555555554432 34333334444444444 23567777666666665543322 2222 5667778889999999
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015709 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (402)
Q Consensus 191 r~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (402)
|..|.+++++++ +|+.-+. .++.+.+++.++++-||.+|+.|+..+.+.+|..... . -++.|..+|.++
T Consensus 96 ~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~---~-~~~~l~~lL~d~ 164 (526)
T PF01602_consen 96 RGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVED---E-LIPKLKQLLSDK 164 (526)
T ss_dssp HHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG---G-HHHHHHHHTTHS
T ss_pred HHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHH---H-HHHHHhhhccCC
Confidence 999999999998 5655544 4688999999999999999999999999988875443 1 378899999765
Q ss_pred CccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChh
Q 015709 271 SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 340 (402)
Q Consensus 271 ~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~ 340 (402)
++.++..|+.++..+ .. ++..... .-..+++.+..++...++-.+.+++..+..+......
T Consensus 165 --~~~V~~~a~~~l~~i-~~-----~~~~~~~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~ 225 (526)
T PF01602_consen 165 --DPSVVSAALSLLSEI-KC-----NDDSYKS-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE 225 (526)
T ss_dssp --SHHHHHHHHHHHHHH-HC-----THHHHTT-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred --cchhHHHHHHHHHHH-cc-----Ccchhhh-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh
Confidence 678999999999988 21 1111001 1234566667777888999999999999988876543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0016 Score=68.41 Aligned_cols=168 Identities=17% Similarity=0.172 Sum_probs=127.2
Q ss_pred HhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcH
Q 015709 139 DLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 218 (402)
Q Consensus 139 ~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L 218 (402)
.+++...+.++|..++..|-.+.-.-. ++. -|++.++.++.+++..+|..+--.+......+|+.- ++ ++
T Consensus 12 ~~~~~~~~~~~~~~~l~kli~~~~~G~---~~~--~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~--~l---~~ 81 (526)
T PF01602_consen 12 ILNSFKIDISKKKEALKKLIYLMMLGY---DIS--FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELL--IL---II 81 (526)
T ss_dssp HHHCSSTHHHHHHHHHHHHHHHHHTT------G--STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHH--HH---HH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCC---CCc--hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHH--HH---HH
Confidence 333332355677778777776543221 111 689999999999999999999999999999988732 22 46
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCC
Q 015709 219 SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV 298 (402)
Q Consensus 219 ~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~ 298 (402)
..+.+=+.++++.+|.-|+.+||++. .+...+. .++.+..++.++ ++.+|++|+.++..+... +|+
T Consensus 82 n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~--~~~VRk~A~~~l~~i~~~-----~p~ 147 (526)
T PF01602_consen 82 NSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDP--SPYVRKKAALALLKIYRK-----DPD 147 (526)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSS--SHHHHHHHHHHHHHHHHH-----CHC
T ss_pred HHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCC--chHHHHHHHHHHHHHhcc-----CHH
Confidence 77778888989999999999999986 4443333 467788888886 568999999999999852 333
Q ss_pred cchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 299 EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 299 ~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
.+... +++.+..+|..+|+.++..|+.++..+
T Consensus 148 ---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 148 ---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp ---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred ---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 22233 799999999888999999999999999
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00024 Score=72.64 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=117.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc----CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc
Q 015709 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLEL----GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 259 (402)
Q Consensus 184 ~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~----g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG 259 (402)
...+..++..+..|++..+. ||..+..|.++ ++++.|.+..+|++.++-.....||+|++..|..++.+|.+.||
T Consensus 52 ~~~~~tv~~~qssC~A~~sk-~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgG 130 (604)
T KOG4500|consen 52 MTASDTVYLFQSSCLADRSK-NEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGG 130 (604)
T ss_pred eeccchhhhhhHHHHHHHhh-hHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCC
Confidence 44567889999999999995 56666666554 77899999999988899999999999999999999999999999
Q ss_pred HHHHHHhhcCC-----CccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC--ChHHHHHHHHHHH
Q 015709 260 DLMLQDILGNS-----SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIK 332 (402)
Q Consensus 260 i~~L~~lL~s~-----~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~ 332 (402)
-+++++.|+.- ..+.++-.-+..++.|-.- .+.+.+..+.+.|+++.|+.++.-+ +....|+.+....
T Consensus 131 aqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l-----~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~ 205 (604)
T KOG4500|consen 131 AQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL-----DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFF 205 (604)
T ss_pred ceehHhhhccccccCCccHHHHHHHHHHHHHHhhC-----CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccc
Confidence 88888877632 1233555556666766552 3567888899999999999987544 7778899988888
Q ss_pred HHhcC
Q 015709 333 NLLQL 337 (402)
Q Consensus 333 ~L~~~ 337 (402)
+|++.
T Consensus 206 nlls~ 210 (604)
T KOG4500|consen 206 NLLSF 210 (604)
T ss_pred cHHHH
Confidence 88765
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00095 Score=74.90 Aligned_cols=176 Identities=15% Similarity=0.103 Sum_probs=127.8
Q ss_pred HHHHH----HhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcH
Q 015709 176 LSVLV----GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ 251 (402)
Q Consensus 176 l~~Li----~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~ 251 (402)
+|++. .+|.|++..-|..|..+|+.++.+.+++-...+. ..++..+..|+++++-||-.|+.||+-+..+.++-.
T Consensus 346 ~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 346 LPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence 55554 4678999999999999999999886655444332 467777788888889999999999999999999988
Q ss_pred HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHH-HHHHhhcCCChHHHHHHHHH
Q 015709 252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK-SVVDLTASADLDLQEKALAA 330 (402)
Q Consensus 252 ~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~-~Lv~lL~~~d~dv~E~aL~a 330 (402)
+.....--++.|+..+.++ .++|++..|+.++-++... ...+...-.. .+++. .+.-++.++.+.++|.++.+
T Consensus 425 qk~~~e~l~~aL~~~ld~~-~~~rV~ahAa~al~nf~E~----~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvta 498 (1075)
T KOG2171|consen 425 QKKHHERLPPALIALLDST-QNVRVQAHAAAALVNFSEE----CDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTA 498 (1075)
T ss_pred HHHHHHhccHHHHHHhccc-CchHHHHHHHHHHHHHHHh----CcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 8888888888999999987 4789999999999998753 1222111111 23444 34445677799999999999
Q ss_pred HHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhH
Q 015709 331 IKNLLQLRTTEALVLKDFCGLDTALERLRQQLQ 363 (402)
Q Consensus 331 L~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~ 363 (402)
+.+.+... ...|. .-.+..+..|+.-++
T Consensus 499 IasvA~AA---~~~F~--pY~d~~Mp~L~~~L~ 526 (1075)
T KOG2171|consen 499 IASVADAA---QEKFI--PYFDRLMPLLKNFLQ 526 (1075)
T ss_pred HHHHHHHH---hhhhH--hHHHHHHHHHHHHHh
Confidence 99998653 33343 233444444444433
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00064 Score=67.55 Aligned_cols=185 Identities=18% Similarity=0.122 Sum_probs=123.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhcCChHhH
Q 015709 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQNNPLVQ 209 (402)
Q Consensus 134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s----~~~~Ir~~Aa~vLg~~aqNNp~~Q 209 (402)
...+..+.++ +.--...|+..|..++..-+....-...+.++.++++|.+ ++.+++..|+.+++++.. ++..+
T Consensus 108 ~~fl~ll~~~--D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R 184 (312)
T PF03224_consen 108 SPFLKLLDRN--DSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYR 184 (312)
T ss_dssp HHHHHH-S-S--SHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHH
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhH
Confidence 3344444443 3344566777777776554433333224556777777653 567788999999999995 68899
Q ss_pred HHHHHcCcHHHHHHhh-----cCCC--HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015709 210 KQVLELGALSKLMKMV-----KSSF--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 210 ~~~le~g~L~~Ll~LL-----~s~~--~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
..|.+.|+++.|..++ .+.+ ..+.-.+++++=.+.- ++.....+...+-++.|.++++... ..|+.|-++.
T Consensus 185 ~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~-KEKvvRv~la 262 (312)
T PF03224_consen 185 QVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSI-KEKVVRVSLA 262 (312)
T ss_dssp HHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcc-cchHHHHHHH
Confidence 9999999999999999 2223 3445677777666644 5777888889999999999999763 5799999999
Q ss_pred HHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC--ChHHHHHH
Q 015709 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKA 327 (402)
Q Consensus 283 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~a 327 (402)
.+.||+.. ......+.++..|+++.+-.+.... |+|+.+-.
T Consensus 263 ~l~Nl~~~----~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl 305 (312)
T PF03224_consen 263 ILRNLLSK----APKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDL 305 (312)
T ss_dssp HHHHTTSS----SSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHH
T ss_pred HHHHHHhc----cHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999853 2333677777888887777776654 77776643
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0023 Score=71.27 Aligned_cols=183 Identities=17% Similarity=0.140 Sum_probs=146.5
Q ss_pred HHHHHHHHHHccCCCCchhHHHh-cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC-
Q 015709 150 SQRALQELLILVEPIDNANDLSK-LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS- 227 (402)
Q Consensus 150 k~~AL~~L~~Lve~iDnA~~l~~-lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s- 227 (402)
|.+||.-|..+++---.|-++.- .|-+|-++++|+++-.++|..=+.+=+.+-.-.|.||...++.+|-...++.|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 56676666666554445655543 6889999999999999999999999999988889999999999888888888877
Q ss_pred CC--HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh
Q 015709 228 SF--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (402)
Q Consensus 228 ~~--~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 305 (402)
.. ++-|.-|.+-|+.++++++.+|+...+.|-+.+-...|.++. .+-+|.=.+-+|.-|-.. .+ ..+=.=.+
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d----~~-~Arw~G~r 640 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWED----YD-EARWSGRR 640 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhh----cc-hhhhcccc
Confidence 32 467899999999999999999999999998888888888753 566777777777776532 22 22212235
Q ss_pred CCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 306 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
.+....|..+|..+-++||..|+.||.+++...
T Consensus 641 ~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 641 DNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred ccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 678889999999999999999999999999864
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0031 Score=68.58 Aligned_cols=220 Identities=20% Similarity=0.216 Sum_probs=164.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcC
Q 015709 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQN 204 (402)
Q Consensus 127 ~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s--~~~~Ir~~Aa~vLg~~aqN 204 (402)
++.++.+.++.+.+.+.. =+++|..|+..|--+.... +.-+...|+++||+.|.. .++++-..|..++..+..+
T Consensus 18 ~s~aETI~kLcDRvessT-L~eDRR~A~rgLKa~srkY---R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~ 93 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVESST-LLEDRRDAVRGLKAFSRKY---REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSH 93 (970)
T ss_pred ccHHhHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHH---HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Confidence 456677888888887754 3577877777776544332 345567799999999954 7899999999999999887
Q ss_pred Ch--------H--------hHHHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc-HHHHHh-cCcHHHHHH
Q 015709 205 NP--------L--------VQKQVLE-LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QEMFYV-EAGDLMLQD 265 (402)
Q Consensus 205 Np--------~--------~Q~~~le-~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~-~~~f~~-~gGi~~L~~ 265 (402)
.+ . ..+.|++ .+.|..|+..+...+--||..++--|++++++-|.- ++.+.. --||..|+.
T Consensus 94 dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd 173 (970)
T KOG0946|consen 94 DDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD 173 (970)
T ss_pred CcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence 52 2 2233443 377888999998878789999999999999986654 555554 469999999
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC---Ch-HHHHHHHHHHHHHhcCChhh
Q 015709 266 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA---DL-DLQEKALAAIKNLLQLRTTE 341 (402)
Q Consensus 266 lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~---d~-dv~E~aL~aL~~L~~~~~~~ 341 (402)
+|.+.. . -+|-.++.+|..|.. .++.....+.=.++...|.+++... |- -+.+-++..|.+|+......
T Consensus 174 lL~Dsr-E-~IRNe~iLlL~eL~k-----~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SN 246 (970)
T KOG0946|consen 174 LLRDSR-E-PIRNEAILLLSELVK-----DNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISN 246 (970)
T ss_pred HHhhhh-h-hhchhHHHHHHHHHc-----cCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcch
Confidence 999763 3 389999999999984 3556555555567788888888654 22 47899999999999987666
Q ss_pred HHHHHhcCCcHHHHHHH
Q 015709 342 ALVLKDFCGLDTALERL 358 (402)
Q Consensus 342 ~~~~~~~~GL~~~L~~L 358 (402)
...|+ +++.-+.|.+|
T Consensus 247 Q~~Fr-E~~~i~rL~kl 262 (970)
T KOG0946|consen 247 QNFFR-EGSYIPRLLKL 262 (970)
T ss_pred hhHHh-ccccHHHHHhh
Confidence 77888 88876666655
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0028 Score=67.95 Aligned_cols=153 Identities=16% Similarity=0.183 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc-h---hHHHhcCCHHHHHHhcCC-------CCHHHHHHHHHH
Q 015709 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-A---NDLSKLGGLSVLVGQLNH-------PDTDIRKISAWI 197 (402)
Q Consensus 129 d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn-A---~~l~~lGgl~~Li~lL~s-------~~~~Ir~~Aa~v 197 (402)
..+.+++++..|+... .+.|..+|--+-.++.+-|. + +.+.+.=|..-|-++|.+ +....+..|..+
T Consensus 3 ~~~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 3 QSASLEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred chHHHHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 3567888999998876 47899999999999987653 2 125555568888889977 457899999999
Q ss_pred HHHHhcCChHhH--HHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccH
Q 015709 198 LGKASQNNPLVQ--KQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEI 274 (402)
Q Consensus 198 Lg~~aqNNp~~Q--~~~le~g~L~~Ll~LL~s~~~-~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~ 274 (402)
|++.+. .|... ..++ +-||.|+.++.+.+. ++...++..|.+++ .+|.+++.|++.|+++.|.+++.+. .
T Consensus 81 L~~f~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~~---~ 153 (543)
T PF05536_consen 81 LAAFCR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPNQ---S 153 (543)
T ss_pred HHHHcC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHhC---c
Confidence 999998 45443 2333 469999999988776 88889999999998 7899999999999999999999874 3
Q ss_pred HHHHHHHHHHHHHhhc
Q 015709 275 RLHRKAVSLVGDLAKC 290 (402)
Q Consensus 275 klq~kA~~lL~~L~~~ 290 (402)
.....|+.++.+++..
T Consensus 154 ~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 154 FQMEIALNLLLNLLSR 169 (543)
T ss_pred chHHHHHHHHHHHHHh
Confidence 4678899999998863
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00012 Score=62.97 Aligned_cols=86 Identities=22% Similarity=0.282 Sum_probs=66.9
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHH-hcCCHHHHHHhcCCCCHHHHHHHHH
Q 015709 118 KELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLS-KLGGLSVLVGQLNHPDTDIRKISAW 196 (402)
Q Consensus 118 ~ea~~~l~~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~-~lGgl~~Li~lL~s~~~~Ir~~Aa~ 196 (402)
+|-...| ..++.+++|.++++|..+. ++.....|+.+|.++|....+.+.++ ++|+=..++.++++++++||..|..
T Consensus 31 ~ENa~kf-~~~~~~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~ 108 (119)
T PF11698_consen 31 RENADKF-EENNFELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALL 108 (119)
T ss_dssp HHHSGGG-SSGGGHHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHH
T ss_pred HHHHHHH-HHcccHHHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHH
Confidence 3333444 2367899999999996654 55667789999999999888888766 5788888889999999999999999
Q ss_pred HHHHHhcCC
Q 015709 197 ILGKASQNN 205 (402)
Q Consensus 197 vLg~~aqNN 205 (402)
++..+..+|
T Consensus 109 avQklm~~~ 117 (119)
T PF11698_consen 109 AVQKLMVNN 117 (119)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 999887654
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0025 Score=68.03 Aligned_cols=140 Identities=14% Similarity=0.145 Sum_probs=113.6
Q ss_pred CHHHHHHHHHHHHH---ccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH
Q 015709 146 SLEDSQRALQELLI---LVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 222 (402)
Q Consensus 146 t~e~k~~AL~~L~~---Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll 222 (402)
+.+..-.|+..+.. .|...++. +-...+..||+++|..|+..|+..+..+|.|++-.-...|..|+.+|+|..|.
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 44455555555544 34444444 77788999999999999999999999999999988777899999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCChh-cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 223 KMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 223 ~LL~s~~~~vr~kAl~ALS~LiR~~~~-~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
+++.+.+..+|.+++|+|-.+.-+... -+.++..-=+...|..+..++ +..+|..+..++.||.-
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~--d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP--DWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC--CHHHHHHHHHHHHHhhc
Confidence 999999999999999999998877543 344455555777778888876 78899999999999974
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0017 Score=67.13 Aligned_cols=176 Identities=18% Similarity=0.150 Sum_probs=133.0
Q ss_pred hcCCHHHHHHhcCCCCH--HHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCh
Q 015709 172 KLGGLSVLVGQLNHPDT--DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNL 248 (402)
Q Consensus 172 ~lGgl~~Li~lL~s~~~--~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~ 248 (402)
.-||+..|+.++.+++- .+|..|+.+|-.+.. .++.+.+...| +..++.+.+... .+.+...+.-|.+|-+|+.
T Consensus 178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe 254 (832)
T KOG3678|consen 178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSE 254 (832)
T ss_pred ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence 45899999999988774 569999999988764 34677777766 677777776544 5677888999999999998
Q ss_pred hcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHH
Q 015709 249 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKAL 328 (402)
Q Consensus 249 ~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL 328 (402)
...+.++.+||+..++--++.. ++.+-+.++.++.|.+-+ ...+....+++..+.+.|.-+-.+.|.-++-+|.
T Consensus 255 et~~~Lvaa~~lD~vl~~~rRt--~P~lLRH~ALAL~N~~L~----~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 255 ETCQRLVAAGGLDAVLYWCRRT--DPALLRHCALALGNCALH----GGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred HHHHHHHhhcccchheeecccC--CHHHHHHHHHHhhhhhhh----chhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 8899999999999988777654 677888999999998754 2344555666767777777776677888899999
Q ss_pred HHHHHHhcCChhhHHHHHhcCCcHHHHHHH
Q 015709 329 AAIKNLLQLRTTEALVLKDFCGLDTALERL 358 (402)
Q Consensus 329 ~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L 358 (402)
.|++.|+...+-.|. ++ ..|-..+++-|
T Consensus 329 lAV~vlat~KE~E~~-Vr-kS~TlaLVEPl 356 (832)
T KOG3678|consen 329 LAVAVLATNKEVERE-VR-KSGTLALVEPL 356 (832)
T ss_pred HHHhhhhhhhhhhHH-Hh-hccchhhhhhh
Confidence 999999988654443 44 34433444443
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0013 Score=75.12 Aligned_cols=178 Identities=17% Similarity=0.095 Sum_probs=138.0
Q ss_pred HHHHHHccCC--CCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHH-cCcHHHHHHhhcCCC
Q 015709 154 LQELLILVEP--IDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLE-LGALSKLMKMVKSSF 229 (402)
Q Consensus 154 L~~L~~Lve~--iDnA~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le-~g~L~~Ll~LL~s~~ 229 (402)
-..|.+|... +.+...|...|-+..|..+- ....+.-....+.+|=|++....+++..|.. -|+|..|+.+|+-+.
T Consensus 415 AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~ 494 (2195)
T KOG2122|consen 415 ASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEG 494 (2195)
T ss_pred HHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccC
Confidence 3455666643 44567788899999998864 4333233334455555555555555555554 489999999998653
Q ss_pred ----HHHHH---HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchh
Q 015709 230 ----VEEAV---KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 302 (402)
Q Consensus 230 ----~~vr~---kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~ 302 (402)
..+.. --|.-+|++|..+.+-++...+++-+..|++.|++. ...+..+++..|.||.. -++..++.
T Consensus 495 qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~--SLTiVSNaCGTLWNLSA-----R~p~DQq~ 567 (2195)
T KOG2122|consen 495 QSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH--SLTIVSNACGTLWNLSA-----RSPEDQQM 567 (2195)
T ss_pred CcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc--ceEEeecchhhhhhhhc-----CCHHHHHH
Confidence 12332 457888999999999999999999999999999997 45678899999999984 47888999
Q ss_pred HHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 303 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 303 l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
|.+.|.|..|.+++.+.+..+.+-+..+|.+|+...
T Consensus 568 LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 568 LWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 999999999999999999999999999999999876
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0005 Score=71.91 Aligned_cols=142 Identities=11% Similarity=0.079 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC
Q 015709 192 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271 (402)
Q Consensus 192 ~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~ 271 (402)
..++.+|-+++..-...+.-..++...++|+++|++++..+..-+..++++.+-.+.+-+..|+..|-+..|+.++.++
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK- 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK- 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-
Confidence 3445556666665555666666777899999999886666677889999999988999999999999999999999976
Q ss_pred ccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCCh
Q 015709 272 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339 (402)
Q Consensus 272 ~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 339 (402)
|..+|.++.|.++++..+ .+...+-.+...-.+..++++.+.++-.+|++++..|.++.+++.
T Consensus 486 -DdaLqans~wvlrHlmyn----cq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~ 548 (743)
T COG5369 486 -DDALQANSEWVLRHLMYN----CQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTS 548 (743)
T ss_pred -hhhhhhcchhhhhhhhhc----CcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccc
Confidence 567999999999999864 222222233444567889999999999999999999999998653
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00063 Score=53.84 Aligned_cols=86 Identities=16% Similarity=0.243 Sum_probs=66.4
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCC
Q 015709 218 LSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 296 (402)
Q Consensus 218 L~~Ll~LL-~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~ 296 (402)
||.|++.+ +++++.+|..|+++|+.+ +.+ ..++.|..+++++ ++.+|..|++++..+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~--~~~---------~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~-------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL--GDP---------EAIPALIELLKDE--DPMVRRAAARALGRIG-------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC--THH---------HHHHHHHHHHTSS--SHHHHHHHHHHHHCCH--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc--CCH---------hHHHHHHHHHcCC--CHHHHHHHHHHHHHhC--------
Confidence 68899999 777789999999999943 111 3488999999775 7889999999998753
Q ss_pred CCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHH
Q 015709 297 KVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIK 332 (402)
Q Consensus 297 ~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~ 332 (402)
+...++.|.+++.++ +..++..|+.+|.
T Consensus 60 --------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 234788899988886 5566888887764
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.016 Score=64.18 Aligned_cols=159 Identities=12% Similarity=0.146 Sum_probs=96.7
Q ss_pred HhHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHH
Q 015709 112 KRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTD 189 (402)
Q Consensus 112 ~r~~~L~ea~~~l-~~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~l~~lGgl~~Li~lL~s~~~~ 189 (402)
+|++-+|+++..+ .|.+-..+.-..++.+.+. +.+.|.-..--+..+.+ +.|.+- =.+..+.+-++++||-
T Consensus 48 ~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~--d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d~Np~ 120 (746)
T PTZ00429 48 RKKAAVKRIIANMTMGRDVSYLFVDVVKLAPST--DLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTNSSPV 120 (746)
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCCCCHH
Confidence 3556666666655 3445445555555544443 45666555555544443 222221 1345566677778888
Q ss_pred HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC
Q 015709 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 269 (402)
Q Consensus 190 Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s 269 (402)
||..|.++++.+- .|..-+. .++.+.+.+.+.++-||++|+.|+..+-+.+|. .+.+.|=++.|..+|.+
T Consensus 121 IRaLALRtLs~Ir--~~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D 190 (746)
T PTZ00429 121 VRALAVRTMMCIR--VSSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLND 190 (746)
T ss_pred HHHHHHHHHHcCC--cHHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcC
Confidence 8888888888775 3433332 346667777777777888888888888776663 33344555667777765
Q ss_pred CCccHHHHHHHHHHHHHHhh
Q 015709 270 SSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 270 ~~~d~klq~kA~~lL~~L~~ 289 (402)
. ++.++..|+.++..+..
T Consensus 191 ~--dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 191 N--NPVVASNAAAIVCEVND 208 (746)
T ss_pred C--CccHHHHHHHHHHHHHH
Confidence 4 55677777777777753
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00035 Score=47.38 Aligned_cols=39 Identities=31% Similarity=0.535 Sum_probs=35.9
Q ss_pred CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015709 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ 203 (402)
Q Consensus 165 DnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aq 203 (402)
+++..+.+.||+++|+++|.+++++++..|+|+|++++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 477889999999999999999999999999999999873
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.022 Score=64.38 Aligned_cols=207 Identities=19% Similarity=0.159 Sum_probs=138.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHh----cC--CHHHHHHhcCC--CC--------------HH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK----LG--GLSVLVGQLNH--PD--------------TD 189 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~----lG--gl~~Li~lL~s--~~--------------~~ 189 (402)
+++-.+++..|.+.+...|..||+.|--+++. |-.+.+ .| .++.++..... .+ ..
T Consensus 248 ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~---Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~ 324 (1075)
T KOG2171|consen 248 IIQFSLEIAKNKELENSIRHLALEFLVSLSEY---APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEET 324 (1075)
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHHHh---hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccC
Confidence 44556667788888888999999999888886 444433 22 24444444321 11 22
Q ss_pred HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC
Q 015709 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 269 (402)
Q Consensus 190 Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s 269 (402)
--..|.++|-.++.+=+..+-.- -.++.+-.++.|.+-..|..|+.|||.+..|++.....- --..+++....|++
T Consensus 325 ~~~~A~~~lDrlA~~L~g~~v~p---~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~-l~~Il~~Vl~~l~D 400 (1075)
T KOG2171|consen 325 PYRAAEQALDRLALHLGGKQVLP---PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGN-LPKILPIVLNGLND 400 (1075)
T ss_pred cHHHHHHHHHHHHhcCChhhehH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHHhhcCC
Confidence 45567777777766533222211 135666678888888889999999999999987654442 23577888888898
Q ss_pred CCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 015709 270 SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRTTEALVLKDF 348 (402)
Q Consensus 270 ~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~~~~~~~~~~~ 348 (402)
+ ++++|--|+.+|+.+.+. -.+..... ..+-+++.|+..+.+. ++.++-+|..|+.++.... ....+.
T Consensus 401 p--hprVr~AA~naigQ~std----l~p~iqk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~--~~~~l~-- 469 (1075)
T KOG2171|consen 401 P--HPRVRYAALNAIGQMSTD----LQPEIQKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC--DKSILE-- 469 (1075)
T ss_pred C--CHHHHHHHHHHHHhhhhh----hcHHHHHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC--cHHHHH--
Confidence 7 689999999999998752 22333222 2346777888888776 7899999999999998653 223343
Q ss_pred CCcHHHHH
Q 015709 349 CGLDTALE 356 (402)
Q Consensus 349 ~GL~~~L~ 356 (402)
.-|+..++
T Consensus 470 pYLd~lm~ 477 (1075)
T KOG2171|consen 470 PYLDGLME 477 (1075)
T ss_pred HHHHHHHH
Confidence 45566666
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.01 Score=60.71 Aligned_cols=184 Identities=17% Similarity=0.131 Sum_probs=134.1
Q ss_pred CCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015709 145 LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (402)
Q Consensus 145 ~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~L 224 (402)
....+|+.||.-+..+++-.+..+. ...|.+..++.+..+++..+|..+..+|..++--||. .+.+.||+..|++.
T Consensus 80 ~~~~ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~ 155 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRA 155 (371)
T ss_pred CChHHHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHH
Confidence 3457899999999888875444444 4778899999999999999999999999999999994 57789999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC-----CccH--HHHHHHHHHHHHHhhcccccCCC
Q 015709 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-----SFEI--RLHRKAVSLVGDLAKCQLENMHK 297 (402)
Q Consensus 225 L~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~-----~~d~--klq~kA~~lL~~L~~~~l~~~~~ 297 (402)
+-+++.++....+.++-.++ ++|..++.+...--++.+..-+.+. +.+. ..-..+..++..+..+ =+
T Consensus 156 l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs-----W~ 229 (371)
T PF14664_consen 156 LIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS-----WP 229 (371)
T ss_pred HHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc-----CC
Confidence 98866566777788888776 4566566555434555555555433 1121 2334566677766642 22
Q ss_pred CcchhHHh-CCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 298 VEPPLFRD-RFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 298 ~~~~~l~~-~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
...-.-.. ...++.|++.|..+++++++..+..+..+....
T Consensus 230 GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 230 GLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred ceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 22211112 257999999999999999999999999998764
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00086 Score=45.41 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=35.2
Q ss_pred hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015709 206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 244 (402)
Q Consensus 206 p~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~Li 244 (402)
+..+..+++.|+++.|++++++++..++..|+|+|++++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346778899999999999999888999999999999986
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.014 Score=59.66 Aligned_cols=202 Identities=15% Similarity=0.116 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCCh
Q 015709 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQNNP 206 (402)
Q Consensus 129 d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s--~~~~Ir~~Aa~vLg~~aqNNp 206 (402)
+.++-+.-++.+-+.+.+.+-...+...|..++.-....-.|+...|...++..|.+ .+-.++-+.+.|+=-++-| |
T Consensus 153 e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~ 231 (442)
T KOG2759|consen 153 ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-P 231 (442)
T ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-H
Confidence 555555555555444445566777788888888877788899999999999998833 5677888888888888865 5
Q ss_pred HhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChh------------------------------------
Q 015709 207 LVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLA------------------------------------ 249 (402)
Q Consensus 207 ~~Q~~~le~g~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~------------------------------------ 249 (402)
..-+.+...+.|+.|.++++++. +.|-+-.+..+-|++-..+.
T Consensus 232 ~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~d 311 (442)
T KOG2759|consen 232 HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDD 311 (442)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHH
Confidence 55566778899999999998754 34444555566666655431
Q ss_pred --------------------------------------------cHHHHHhc--CcHHHHHHhhcCCCccHHHHHHHHHH
Q 015709 250 --------------------------------------------GQEMFYVE--AGDLMLQDILGNSSFEIRLHRKAVSL 283 (402)
Q Consensus 250 --------------------------------------------~~~~f~~~--gGi~~L~~lL~s~~~d~klq~kA~~l 283 (402)
+.+.|.+. --+..|+.+|++.+ |+.+-.-|++=
T Consensus 312 i~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~-Dp~iL~VAc~D 390 (442)
T KOG2759|consen 312 IEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSN-DPIILCVACHD 390 (442)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCC-CCceeehhhhh
Confidence 44444432 25566777777653 45555567776
Q ss_pred HHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 284 L~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
|+...+. .|..+..+.+.|+=..+.++|+++|++++=+|+.|+..|...
T Consensus 391 Ige~Vr~-----yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 391 IGEYVRH-----YPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHh-----CchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 7766643 577788888999999999999999999999999999998754
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0057 Score=53.95 Aligned_cols=126 Identities=10% Similarity=0.069 Sum_probs=95.7
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 176 LSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 176 l~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
+..|+.-. +..+.+-+.+...=|++.+. .|.+-....+.+++...+.-+...+.....-++.+|+|+|-+ +.+.+-+
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~I 95 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKFI 95 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHHH
Confidence 44455433 55778888887777888885 688999999999999999999998888899999999999875 5667777
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHH
Q 015709 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 310 (402)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~ 310 (402)
.+++|++.++.++.|+ .......|+.++..|+. .+-..++.+....++.
T Consensus 96 ~ea~g~plii~~lssp--~e~tv~sa~~~l~~l~~-----~~Rt~r~ell~p~Vv~ 144 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSP--PEITVHSAALFLQLLEF-----GERTERDELLSPAVVR 144 (173)
T ss_pred HHhcCCceEEeecCCC--hHHHHHHHHHHHHHhcC-----cccchhHHhccHHHHH
Confidence 8999999999999997 33455566777777763 3445555555444333
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.057 Score=59.98 Aligned_cols=164 Identities=15% Similarity=0.108 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHHHcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015709 146 SLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lv-e~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~L 224 (402)
+...|..++..+-.+. ...|... +++-++.++.+++.++|....-.+.+.+..+|+.- ++ ++..|.+=
T Consensus 45 ~~~~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela--lL---aINtl~KD 113 (746)
T PTZ00429 45 DSYRKKAAVKRIIANMTMGRDVSY------LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA--LL---AVNTFLQD 113 (746)
T ss_pred CHHHHHHHHHHHHHHHHCCCCchH------HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH--HH---HHHHHHHH
Confidence 3466777776665543 4444333 57778899999999999999999999998888643 22 46777888
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHH
Q 015709 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (402)
Q Consensus 225 L~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~ 304 (402)
+.+.++-+|.-|+.++|++. . +...+. .+..+.+++.++ ++.+|++|+.++..+.. .+++ .+.
T Consensus 114 l~d~Np~IRaLALRtLs~Ir-~-~~i~e~-----l~~~lkk~L~D~--~pYVRKtAalai~Kly~-----~~pe---lv~ 176 (746)
T PTZ00429 114 TTNSSPVVRALAVRTMMCIR-V-SSVLEY-----TLEPLRRAVADP--DPYVRKTAAMGLGKLFH-----DDMQ---LFY 176 (746)
T ss_pred cCCCCHHHHHHHHHHHHcCC-c-HHHHHH-----HHHHHHHHhcCC--CHHHHHHHHHHHHHHHh-----hCcc---ccc
Confidence 88888999999999999973 2 332332 345678888875 68899999999999874 2343 345
Q ss_pred hCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 305 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 305 ~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
+.|+++.|.++|...|+.++-.|+.+|..+...
T Consensus 177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999998754
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0024 Score=53.53 Aligned_cols=67 Identities=9% Similarity=0.054 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHH
Q 015709 233 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (402)
Q Consensus 233 r~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~ 304 (402)
|...+-.|++++-.++..|+.+.+.||++.+.++..-+..++-+|..|.|+|.+|+.. +++.+..+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~-----n~eNQ~~I~ 69 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEG-----NPENQEFIA 69 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhC-----CHHHHHHHH
Confidence 5567788999999999999999999999999999876656899999999999999953 445444443
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.029 Score=62.97 Aligned_cols=135 Identities=19% Similarity=0.202 Sum_probs=105.3
Q ss_pred HHHHHHHHHHccC-CCCchhHHHh----cCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHH
Q 015709 150 SQRALQELLILVE-PIDNANDLSK----LGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK 223 (402)
Q Consensus 150 k~~AL~~L~~Lve-~iDnA~~l~~----lGgl~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~ 223 (402)
..-+|..|.+++. +.|.|..|-. +|-++.++.+|. +.++.|+..|..++.-+..|-| |-+.+.+.|.+..|+.
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~-Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKE-CVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccH-HHHHHHhhhHHHHHHH
Confidence 3457888888774 6788877755 788999999884 5889999999999998887655 7778888999999999
Q ss_pred hhcCCCHHHHH---HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc
Q 015709 224 MVKSSFVEEAV---KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (402)
Q Consensus 224 LL~s~~~~vr~---kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~ 291 (402)
||.|.+ +.|. ..+|||++ ++....+-.++||+..|..++-.. +.+..|..|+.++.-|..+.
T Consensus 1821 lLHS~P-S~R~~vL~vLYAL~S----~~~i~keA~~hg~l~yil~~~c~~-~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1821 LLHSQP-SMRARVLDVLYALSS----NGQIGKEALEHGGLMYILSILCLT-NSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHhcCh-HHHHHHHHHHHHHhc----CcHHHHHHHhcCchhhhhHHHhcc-CcHHHHHHHHHHHHHhhhcc
Confidence 998744 4454 45666653 456667778899999988887654 25668889999999998654
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.046 Score=56.93 Aligned_cols=157 Identities=14% Similarity=0.015 Sum_probs=118.6
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHc-----CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015709 176 LSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLEL-----GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 249 (402)
Q Consensus 176 l~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~-----g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~ 249 (402)
...++++|+ .+++++..+....+.-+.+.+|.....|.+. ....+++.+|..++..+..+|++.|+.++...+.
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~ 134 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLA 134 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcc
Confidence 456667774 4789999999999999999999988888876 4677888899988888899999999999876443
Q ss_pred cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC--ChHHHHHH
Q 015709 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKA 327 (402)
Q Consensus 250 ~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~a 327 (402)
........--++.|...|++.+ +...+.-++.++..|+. .+..+..|.+.++++.|+.+|+.. +..++=++
T Consensus 135 ~~~~~~l~~~~~~l~~~l~~~~-~~~~~~~~v~~L~~LL~------~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ 207 (429)
T cd00256 135 KMEGSDLDYYFNWLKEQLNNIT-NNDYVQTAARCLQMLLR------VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQS 207 (429)
T ss_pred ccchhHHHHHHHHHHHHhhccC-CcchHHHHHHHHHHHhC------CchHHHHHHHccCHHHHHHHHhhccccHHHHHHH
Confidence 2221111112235666666542 34567778888988885 467888888888999999999764 56888899
Q ss_pred HHHHHHHhcCCh
Q 015709 328 LAAIKNLLQLRT 339 (402)
Q Consensus 328 L~aL~~L~~~~~ 339 (402)
+.+++-|.-..+
T Consensus 208 ll~lWlLSF~~~ 219 (429)
T cd00256 208 IFCIWLLTFNPH 219 (429)
T ss_pred HHHHHHHhccHH
Confidence 999998877643
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.013 Score=60.67 Aligned_cols=119 Identities=15% Similarity=0.081 Sum_probs=93.7
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
++..|+..|.++++++|..++..||.+-. .+..+.|+.+|+++++.+|..++.+++. ++
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~-----------~~a~~~L~~~L~~~~p~vR~aal~al~~--r~-------- 145 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGG-----------RQAEPWLEPLLAASEPPGRAIGLAALGA--HR-------- 145 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCc-----------hHHHHHHHHHhcCCChHHHHHHHHHHHh--hc--------
Confidence 38899999999999999999999997632 2467889999999889999888877765 11
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
..-.+.|..+|+++ ++.++..|+.++..+-. ...++.|...+...|+.++..|+.++..+
T Consensus 146 --~~~~~~L~~~L~d~--d~~Vra~A~raLG~l~~----------------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 146 --HDPGPALEAALTHE--DALVRAAALRALGELPR----------------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred --cChHHHHHHHhcCC--CHHHHHHHHHHHHhhcc----------------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 12234678888865 77899999999998752 34566677788999999999999888665
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.013 Score=65.58 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=109.7
Q ss_pred CchhHHHhcCCHHHHHHhcCC---CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHH
Q 015709 165 DNANDLSKLGGLSVLVGQLNH---PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTV 240 (402)
Q Consensus 165 DnA~~l~~lGgl~~Li~lL~s---~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~-~~vr~kAl~AL 240 (402)
..--+++|-+|-...++.|.. -+++-|..||.||+.++.|-+.-|+..++.+.|..-+..++++. +-.|.-.+-+|
T Consensus 545 SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icL 624 (1387)
T KOG1517|consen 545 SCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICL 624 (1387)
T ss_pred hhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 345689999999999999865 24699999999999999999999999999999999999999864 45688999999
Q ss_pred HHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 241 SSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 241 S~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
+-|=.+++.++-.-.+.++.+.|..+|.++ -+.+|.-|+|+|..++..
T Consensus 625 G~LW~d~~~Arw~G~r~~AhekL~~~LsD~--vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 625 GRLWEDYDEARWSGRRDNAHEKLILLLSDP--VPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHHhhhcchhhhccccccHHHHHHHHhcCc--cHHHHHHHHHHHHHHhcc
Confidence 999999999888778899999999999986 577999999999999864
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.034 Score=60.55 Aligned_cols=143 Identities=14% Similarity=0.166 Sum_probs=98.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH-H-HcCcHHHHHHhhcCCCHHH---HHHHHHHHHHHh---cCChhc
Q 015709 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV-L-ELGALSKLMKMVKSSFVEE---AVKALYTVSSLI---RNNLAG 250 (402)
Q Consensus 179 Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~-l-e~g~L~~Ll~LL~s~~~~v---r~kAl~ALS~Li---R~~~~~ 250 (402)
++..|+++.+.+|.+|+..++.++.--..|++.- + ..| -.|...|..+.+++ ..+|++||-|.+ .-+||.
T Consensus 804 iL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi 881 (1172)
T KOG0213|consen 804 ILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI 881 (1172)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh
Confidence 3456789999999999999999985333333321 1 122 23556777767776 457777777755 224443
Q ss_pred HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHH
Q 015709 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA 330 (402)
Q Consensus 251 ~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~a 330 (402)
.+-++-|..+|++. ..|++.+++-++..+|.. .++....=.=..+|--|+++|++-+..++..|..+
T Consensus 882 ------~dllPrltPILknr--heKVqen~IdLvg~Iadr-----gpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nT 948 (1172)
T KOG0213|consen 882 ------KDLLPRLTPILKNR--HEKVQENCIDLVGTIADR-----GPEYVSAREWMRICFELLELLKAHKKEIRRAAVNT 948 (1172)
T ss_pred ------hhhcccchHhhhhh--HHHHHHHHHHHHHHHHhc-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 25678889999986 689999999999999964 33332221113466678888888888899888888
Q ss_pred HHHHhc
Q 015709 331 IKNLLQ 336 (402)
Q Consensus 331 L~~L~~ 336 (402)
+..++.
T Consensus 949 fG~Iak 954 (1172)
T KOG0213|consen 949 FGYIAK 954 (1172)
T ss_pred hhHHHH
Confidence 877764
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0036 Score=53.85 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=63.8
Q ss_pred CHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015709 175 GLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (402)
Q Consensus 175 gl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~ 246 (402)
.+..|+.+| .+.++.+.+-||.=||..++..|..+..+-+.|+=..++.|+.+++++||..|+.|+.-++.+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 467788999 667899999999999999999999999998999999999999999999999999999987754
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.094 Score=56.34 Aligned_cols=155 Identities=15% Similarity=0.109 Sum_probs=120.3
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH---HHHHHcCcHHHHHHhhcCCC-------HHHHHHHHHHHHHHh
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ---KQVLELGALSKLMKMVKSSF-------VEEAVKALYTVSSLI 244 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q---~~~le~g~L~~Ll~LL~s~~-------~~vr~kAl~ALS~Li 244 (402)
.+...+.+|++.+.+=|..+.-.+.+++.+++..+ +.+.+.=|.+.|-+||.+.. ...+.-|+.-|++.+
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 35667888988888889999999999999887433 35777777788889998832 345677888888888
Q ss_pred cCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHH
Q 015709 245 RNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQ 324 (402)
Q Consensus 245 R~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~ 324 (402)
+. |.....---.+=+|.|+.++.+.. +..+...+..+|..++. .++-+..+.+.|.++.|++.+.+ ....+
T Consensus 86 ~~-~~~a~~~~~~~~IP~Lle~l~~~s-~~~~v~dalqcL~~Ias------~~~G~~aLl~~g~v~~L~ei~~~-~~~~~ 156 (543)
T PF05536_consen 86 RD-PELASSPQMVSRIPLLLEILSSSS-DLETVDDALQCLLAIAS------SPEGAKALLESGAVPALCEIIPN-QSFQM 156 (543)
T ss_pred CC-hhhhcCHHHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHHHc------CcHhHHHHHhcCCHHHHHHHHHh-CcchH
Confidence 73 332222222478999999998763 34678899999999984 56778899999999999999888 56789
Q ss_pred HHHHHHHHHHhcCC
Q 015709 325 EKALAAIKNLLQLR 338 (402)
Q Consensus 325 E~aL~aL~~L~~~~ 338 (402)
|.++.++.+++...
T Consensus 157 E~Al~lL~~Lls~~ 170 (543)
T PF05536_consen 157 EIALNLLLNLLSRL 170 (543)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988764
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.31 Score=48.63 Aligned_cols=241 Identities=18% Similarity=0.142 Sum_probs=136.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHh---cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC---Ch
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK---LGGLSVLVGQLNHPDTDIRKISAWILGKASQN---NP 206 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~---lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN---Np 206 (402)
++++|+.+.+.. ...|+.+|..|..++...=. -++.. .-.+..+.+.++.+..+-+..|+.+++-++=. .+
T Consensus 45 L~~~Id~l~eK~--~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 45 LKEAIDLLTEKS--SSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHHHHHhcC--HHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc
Confidence 555666666543 57789999998887754322 23332 23466777888877777788999999888633 23
Q ss_pred HhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhc--C-ChhcHHHHHhcCcHH--HHHHhhcCCC--------
Q 015709 207 LVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIR--N-NLAGQEMFYVEAGDL--MLQDILGNSS-------- 271 (402)
Q Consensus 207 ~~Q~~~le~g~L~~Ll~LL~s~~--~~vr~kAl~ALS~LiR--~-~~~~~~~f~~~gGi~--~L~~lL~s~~-------- 271 (402)
.. +.+++ ...|.|.+++.+.+ ..+|..+++||+-++- . .+....... ..++ ....+.+++.
T Consensus 122 ~~-~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 122 DS-EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred cH-HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCC
Confidence 33 34444 36788889888765 3556777777775432 2 222222111 1122 1112222221
Q ss_pred ccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCc
Q 015709 272 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 351 (402)
Q Consensus 272 ~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL 351 (402)
.+..+...|+..-+-|++. .+........ ...++.|+.+|.++|.++|-.|-.+|.-|.....+....+ .
T Consensus 198 ~~~~l~~aAL~aW~lLlt~----~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~-----~ 267 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTT----LPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDF-----L 267 (309)
T ss_pred CccHHHHHHHHHHHHHHhc----CCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccc-----c
Confidence 1345777777777666642 1222122222 3468999999999999999999999988875532111111 2
Q ss_pred HHHHHHHHHHhHHhhhhhhHhhhHHHHHHHHHHHHHHHHHHhh
Q 015709 352 DTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKLD 394 (402)
Q Consensus 352 ~~~L~~L~~~~~~l~~~e~~~~y~~~l~~~~~e~~~~~~~~~~ 394 (402)
.+-...|-+.+++|..+- ..|.-.- =|++-...|++-+.
T Consensus 268 ~~~~~~l~~~l~~La~dS--~K~~sKk--drk~qRs~Frdil~ 306 (309)
T PF05004_consen 268 YEDMEELLEQLRELATDS--SKSRSKK--DRKQQRSSFRDILT 306 (309)
T ss_pred ccCHHHHHHHHHHHHHhc--cCccchh--HHHHHHHHHHHHHH
Confidence 223445555556665432 2222111 24555666666543
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.021 Score=60.20 Aligned_cols=168 Identities=11% Similarity=0.133 Sum_probs=123.1
Q ss_pred hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc-
Q 015709 172 KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG- 250 (402)
Q Consensus 172 ~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~- 250 (402)
.....++|+++|..|+.-|...+...+.+.+---...|..|++.|.|..|+.++.+.+...+++..|-+--+.-|+...
T Consensus 429 d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~e 508 (743)
T COG5369 429 DYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNE 508 (743)
T ss_pred ccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchh
Confidence 3456788999999888888888888888888766669999999999999999999988899999999999998887554
Q ss_pred HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhC---C-cHHHHHHhhcCCC-hHHHH
Q 015709 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR---F-FLKSVVDLTASAD-LDLQE 325 (402)
Q Consensus 251 ~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~---g-~v~~Lv~lL~~~d-~dv~E 325 (402)
+-+|+.-.|+..++....++ ..++|.....++.|+.-.. ..++...+.+.+. . +.+.+++-+...+ .++++
T Consensus 509 kf~~Lakig~~kvl~~~NDp--c~~vq~q~lQilrNftc~~--~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~ 584 (743)
T COG5369 509 KFKFLAKIGVEKVLSYTNDP--CFKVQHQVLQILRNFTCDT--SKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE 584 (743)
T ss_pred hhhhHHhcCHHHHHHHhcCc--ccccHHHHHHHHHhccccc--ccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence 44678889999999999987 6889999999999986521 1123333333322 1 4455666666654 45566
Q ss_pred HHHHHHHHHhcCChhhHHH
Q 015709 326 KALAAIKNLLQLRTTEALV 344 (402)
Q Consensus 326 ~aL~aL~~L~~~~~~~~~~ 344 (402)
..-..+...+++. +.++.
T Consensus 585 ~~yilv~~aa~d~-~l~~~ 602 (743)
T COG5369 585 GCYILVRNAACDD-TLDYI 602 (743)
T ss_pred hHHHHHHHHhccc-hHHHH
Confidence 6544444444443 34443
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.056 Score=59.63 Aligned_cols=139 Identities=17% Similarity=0.225 Sum_probs=85.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~ 255 (402)
++-+++...+.+.+++..----+-..++.+| +..++ +++.+.+=++++++.+|..|+..+|.+ |.. . +.
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l-~~~-e----l~ 125 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALL---AVNTIQKDLQDPNEEIRGFALRTLSLL-RVK-E----LL 125 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHH---HHHHHHhhccCCCHHHHHHHHHHHHhc-ChH-H----HH
Confidence 4555665556667777766666667777777 33333 356666666676777777777777754 321 1 11
Q ss_pred hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 256 ~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
-..+.++.+++.++ +..+|+.|+.++..+-. .+ ...+.+.|.+..+..++...|+.|...|+.+|..+-
T Consensus 126 -~~~~~~ik~~l~d~--~ayVRk~Aalav~kly~-----ld---~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 126 -GNIIDPIKKLLTDP--HAYVRKTAALAVAKLYR-----LD---KDLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred -HHHHHHHHHHccCC--cHHHHHHHHHHHHHHHh-----cC---HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 12456677777765 45677777777777652 12 224445667777777777777777777776666654
Q ss_pred c
Q 015709 336 Q 336 (402)
Q Consensus 336 ~ 336 (402)
.
T Consensus 195 ~ 195 (757)
T COG5096 195 P 195 (757)
T ss_pred h
Confidence 3
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.051 Score=49.12 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=97.5
Q ss_pred chhHHHhcCCHHHHHHhcCCCC------HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHH
Q 015709 166 NANDLSKLGGLSVLVGQLNHPD------TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKAL 237 (402)
Q Consensus 166 nA~~l~~lGgl~~Li~lL~s~~------~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~--~~vr~kAl 237 (402)
.|..|++.||+..|++.+.++. .++..++..+.-.+....--+.+ .++...+.+++..++... ..+...|+
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHH
Confidence 5889999999999999996644 47778888888777765433443 455567889999998655 56778889
Q ss_pred HHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 238 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 238 ~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.-|=+++-+++...+.+.+.=-++-|+..|+.+ +..+|.+|+.++..|...
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~--~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVS--NQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC--CHHHHHHHHHHHHHHHhc
Confidence 889999998887788777777888999999985 677999999999999853
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.32 Score=50.46 Aligned_cols=159 Identities=18% Similarity=0.069 Sum_probs=99.1
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
.....++..|.+. ++..+..++..+.. +...-.++++.+|+++++.+|..|+.+||.+-.
T Consensus 117 ~a~~~L~~~L~~~--~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~------- 176 (410)
T TIGR02270 117 QAEPWLEPLLAAS--EPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPR------- 176 (410)
T ss_pred HHHHHHHHHhcCC--ChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-------
Confidence 3444455555443 34555556655544 222346789999999999999999999999874
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH---h-cC------------------cHHHHHHhhc
Q 015709 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY---V-EA------------------GDLMLQDILG 268 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~---~-~g------------------Gi~~L~~lL~ 268 (402)
..+++.|...+.+.++.||..|+++++-+ +.+.+..... . .| .++.|..+++
T Consensus 177 ----~~a~~~L~~al~d~~~~VR~aA~~al~~l--G~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~ 250 (410)
T TIGR02270 177 ----RLSESTLRLYLRDSDPEVRFAALEAGLLA--GSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQ 250 (410)
T ss_pred ----ccchHHHHHHHcCCCHHHHHHHHHHHHHc--CCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhc
Confidence 24678888999999999999999999765 2233222211 1 11 1233333344
Q ss_pred CCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 269 NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 269 s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
++ .+++-+++++..+- +...++.|+..+..+ .+...|..++..++..
T Consensus 251 d~----~vr~~a~~AlG~lg----------------~p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 251 AA----ATRREALRAVGLVG----------------DVEAAPWCLEAMREP--PWARLAGEAFSLITGM 297 (410)
T ss_pred Ch----hhHHHHHHHHHHcC----------------CcchHHHHHHHhcCc--HHHHHHHHHHHHhhCC
Confidence 32 14555555555442 234666667766543 4888888888877764
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0049 Score=44.97 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015709 230 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (402)
Q Consensus 230 ~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L 287 (402)
+.+|..|+++|+++..+.+...+. +....++.|..+|+++ +..+|..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~--~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD--DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS--SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC--CHHHHHHHHHHHhcC
Confidence 368999999999988877765555 4568899999999876 457999999999865
|
... |
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.042 Score=54.98 Aligned_cols=154 Identities=11% Similarity=0.077 Sum_probs=116.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh--HhHHH--HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcH
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNP--LVQKQ--VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ 251 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp--~~Q~~--~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~ 251 (402)
.|.|-.-|.+++..++..||.-||.+..|.. .+.+. ++..|.++.++..+-.++.++...|+-.|+++.+ +|.+.
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaal 162 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAAL 162 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHH
Confidence 4555567889999999999999999999876 33333 4578999999999999999999999999999987 78888
Q ss_pred HHHHhcCcHHHH--HHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcC-CChHHHHHHH
Q 015709 252 EMFYVEAGDLML--QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKAL 328 (402)
Q Consensus 252 ~~f~~~gGi~~L--~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~d~dv~E~aL 328 (402)
+.++..+-...+ +.+-... +.-.|.+...+|-.+.. ..+.........|++..|..-|+. .|.-++-.++
T Consensus 163 eaiFeSellDdlhlrnlaakc--ndiaRvRVleLIieifS-----iSpesaneckkSGLldlLeaElkGteDtLVianci 235 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKC--NDIARVRVLELIIEIFS-----ISPESANECKKSGLLDLLEAELKGTEDTLVIANCI 235 (524)
T ss_pred HHhcccccCChHHHhHHHhhh--hhHHHHHHHHHHHHHHh-----cCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHH
Confidence 888776544433 3332222 23478888888887763 355566666778888888776665 5777888888
Q ss_pred HHHHHHhcC
Q 015709 329 AAIKNLLQL 337 (402)
Q Consensus 329 ~aL~~L~~~ 337 (402)
..+..|+..
T Consensus 236 ElvteLaet 244 (524)
T KOG4413|consen 236 ELVTELAET 244 (524)
T ss_pred HHHHHHHHH
Confidence 888888764
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.046 Score=48.39 Aligned_cols=108 Identities=14% Similarity=0.060 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
+.|.|+....+|.++.-+.-|=.-+..+..+..++..|..++..+...+.-.|.++|- .+...+.|++.+++|.++..+
T Consensus 30 ~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I~ea~g~plii~~l 108 (173)
T KOG4646|consen 30 NIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFIREALGLPLIIFVL 108 (173)
T ss_pred cHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHHHHhcCCceEEeec
Confidence 4678888888999988777787889999999999999999999999999999999996 578899999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
+|....+.-.|+.++--|.-+...-...+
T Consensus 109 ssp~e~tv~sa~~~l~~l~~~~Rt~r~el 137 (173)
T KOG4646|consen 109 SSPPEITVHSAALFLQLLEFGERTERDEL 137 (173)
T ss_pred CCChHHHHHHHHHHHHHhcCcccchhHHh
Confidence 98777666667666666654443333333
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.21 Score=54.71 Aligned_cols=176 Identities=15% Similarity=0.159 Sum_probs=119.2
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc-HHHHHhcCc
Q 015709 181 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QEMFYVEAG 259 (402)
Q Consensus 181 ~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~-~~~f~~~gG 259 (402)
.-+++|+=.-|..|+-+.|.+-..-...+-.-+..+++|.++.+..+++--++..+.|+++.++.+.+.. .....-..-
T Consensus 371 e~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~ 450 (859)
T KOG1241|consen 371 ENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSK 450 (859)
T ss_pred HhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHH
Confidence 3556788888899999999999876667777777899999999999666677889999999999887643 233334566
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCC-----CcchhHHhCCcHHHHHHhhcC---CChHHHHHHHHHH
Q 015709 260 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK-----VEPPLFRDRFFLKSVVDLTAS---ADLDLQEKALAAI 331 (402)
Q Consensus 260 i~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~-----~~~~~l~~~g~v~~Lv~lL~~---~d~dv~E~aL~aL 331 (402)
++.+..-|.+ .+++-.+++|++.+|+....+.... ..-+.+ ..++..|++.-.. .+..+|..+-.||
T Consensus 451 l~~l~~gL~D---ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y--~~ii~~Ll~~tdr~dgnqsNLR~AAYeAL 525 (859)
T KOG1241|consen 451 LSALLEGLND---EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFY--EAIIGSLLKVTDRADGNQSNLRSAAYEAL 525 (859)
T ss_pred HHHHHHHhhh---CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhH--HHHHHHHHhhccccccchhhHHHHHHHHH
Confidence 6777777775 5889999999999998543111110 001111 1234444444333 2578999999999
Q ss_pred HHHhcCChh-hHHHHHhcCCcHHHHHHHHHHhH
Q 015709 332 KNLLQLRTT-EALVLKDFCGLDTALERLRQQLQ 363 (402)
Q Consensus 332 ~~L~~~~~~-~~~~~~~~~GL~~~L~~L~~~~~ 363 (402)
..+...+++ +..++. .-..-.+++|.+-++
T Consensus 526 mElIk~st~~vy~~v~--~~~l~il~kl~q~i~ 556 (859)
T KOG1241|consen 526 MELIKNSTDDVYPMVQ--KLTLVILEKLDQTIS 556 (859)
T ss_pred HHHHHcCcHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 999988654 333332 123344566655555
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.11 Score=54.38 Aligned_cols=134 Identities=20% Similarity=0.244 Sum_probs=95.9
Q ss_pred HHHHHHHccCCCCchhHHHhcCCHHHHHHhc----------CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH
Q 015709 153 ALQELLILVEPIDNANDLSKLGGLSVLVGQL----------NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 222 (402)
Q Consensus 153 AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL----------~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll 222 (402)
+|+.|.-+-.+..++..+..-.|+..|+.+- ..+++.+...|.+||+|+.-++|..|+.+.+.|+.+.++
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 3566666777777777777777777777654 347899999999999999999999999999999999999
Q ss_pred HhhcCC-----CHHH---HHHHHHHHHHHhcCChhcHHH-HHhcCcHHHHHHhhcC--------CC-------ccHHHHH
Q 015709 223 KMVKSS-----FVEE---AVKALYTVSSLIRNNLAGQEM-FYVEAGDLMLQDILGN--------SS-------FEIRLHR 278 (402)
Q Consensus 223 ~LL~s~-----~~~v---r~kAl~ALS~LiR~~~~~~~~-f~~~gGi~~L~~lL~s--------~~-------~d~klq~ 278 (402)
..|+.. +.++ -.+-++-++++. +..+.. +-+++|+..|...|.. .. .+...-.
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~---~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~ 157 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALR---PDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALS 157 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHH
Confidence 999976 3333 345555555443 333434 4457899888887642 00 1344456
Q ss_pred HHHHHHHHHhh
Q 015709 279 KAVSLVGDLAK 289 (402)
Q Consensus 279 kA~~lL~~L~~ 289 (402)
.++.++.|+..
T Consensus 158 EiLKllFNit~ 168 (446)
T PF10165_consen 158 EILKLLFNITL 168 (446)
T ss_pred HHHHHHHHhhh
Confidence 67777777764
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.053 Score=58.04 Aligned_cols=146 Identities=18% Similarity=0.149 Sum_probs=95.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHH----HHHHhhcCCCHHH---HHHHHHHHHHHhcCChh
Q 015709 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALS----KLMKMVKSSFVEE---AVKALYTVSSLIRNNLA 249 (402)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~----~Ll~LL~s~~~~v---r~kAl~ALS~LiR~~~~ 249 (402)
..++.+|+++.|.+|.+|+...|.++.- -.+.-+..-+. .|...|..+.+++ ..+|+++|-+..+-. .
T Consensus 607 StiL~~L~~k~p~vR~~aadl~~sl~~v----lk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~-~ 681 (975)
T COG5181 607 STILKLLRSKPPDVRIRAADLMGSLAKV----LKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFR-S 681 (975)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHH----HHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccc-c
Confidence 3456788999999999999999998741 11111111222 2445555556766 457777776665432 1
Q ss_pred cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHH
Q 015709 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALA 329 (402)
Q Consensus 250 ~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~ 329 (402)
-|-- -.|.++.|..+|++. ..|++.+++.++.-+|.. .|+....=.=..++--|+++|.+-+..++..|..
T Consensus 682 mqpP--i~~ilP~ltPILrnk--h~Kv~~nti~lvg~I~~~-----~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~ 752 (975)
T COG5181 682 MQPP--ISGILPSLTPILRNK--HQKVVANTIALVGTICMN-----SPEYIGVREWMRICFELVDSLKSWNKEIRRNATE 752 (975)
T ss_pred cCCc--hhhccccccHhhhhh--hHHHhhhHHHHHHHHHhc-----CcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhh
Confidence 1111 136778899999986 688999999999999964 3332221111346667888888888888888887
Q ss_pred HHHHHhc
Q 015709 330 AIKNLLQ 336 (402)
Q Consensus 330 aL~~L~~ 336 (402)
++..++.
T Consensus 753 tfG~Is~ 759 (975)
T COG5181 753 TFGCISR 759 (975)
T ss_pred hhhhHHh
Confidence 7776653
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.15 Score=56.11 Aligned_cols=200 Identities=21% Similarity=0.237 Sum_probs=122.9
Q ss_pred HhHHHHHHHH--HHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHH
Q 015709 112 KRQMEIKELM--EKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTD 189 (402)
Q Consensus 112 ~r~~~L~ea~--~~l~~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~ 189 (402)
+|++-+.+.| .-+|-|+..-.| ++++.+.++... |-|+.=|-...-|=|..| ++-+ ..-.|.+-|+|++--
T Consensus 50 ~r~rniaKLlYi~MLGypahFGqi-eclKLias~~f~-dKRiGYLaamLlLdE~qd----vllL-ltNslknDL~s~nq~ 122 (866)
T KOG1062|consen 50 KRHRNIAKLLYIHMLGYPAHFGQI-ECLKLIASDNFL-DKRIGYLAAMLLLDERQD----LLLL-LTNSLKNDLNSSNQY 122 (866)
T ss_pred HHHHHHHHHHHHHHhCCCccchhh-HHHHHhcCCCch-HHHHHHHHHHHHhccchH----HHHH-HHHHHHhhccCCCee
Confidence 4555554442 333555555554 466666666554 666666665555444443 2211 112344567889999
Q ss_pred HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC
Q 015709 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 269 (402)
Q Consensus 190 Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s 269 (402)
+...|.-+||+++ +|+.-. ...|.+-+++++.++-+|+||+.|.--++|.-|...+.|+. .-..+|.+
T Consensus 123 vVglAL~alg~i~--s~Emar-----dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~-----~~~~lL~e 190 (866)
T KOG1062|consen 123 VVGLALCALGNIC--SPEMAR-----DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVI-----AFRKLLCE 190 (866)
T ss_pred ehHHHHHHhhccC--CHHHhH-----HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhH-----HHHHHHhh
Confidence 9999999999998 354333 35688889999989999999999999999999888777752 22334444
Q ss_pred CCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhc---------------CCChHHHHHHHHHHHHH
Q 015709 270 SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA---------------SADLDLQEKALAAIKNL 334 (402)
Q Consensus 270 ~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~---------------~~d~dv~E~aL~aL~~L 334 (402)
. +..+-.-++.++..||. .+++....+.+ +++.+|..|+ -+||-+|-+.|+.|.-|
T Consensus 191 k--~hGVL~~~l~l~~e~c~-----~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriL 261 (866)
T KOG1062|consen 191 K--HHGVLIAGLHLITELCK-----ISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRIL 261 (866)
T ss_pred c--CCceeeeHHHHHHHHHh-----cCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHh
Confidence 3 23445556666666664 23444444444 4444444432 13566666777666666
Q ss_pred hcCCh
Q 015709 335 LQLRT 339 (402)
Q Consensus 335 ~~~~~ 339 (402)
-+...
T Consensus 262 Gq~d~ 266 (866)
T KOG1062|consen 262 GQNDA 266 (866)
T ss_pred cCCCc
Confidence 65543
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.091 Score=54.76 Aligned_cols=154 Identities=13% Similarity=0.122 Sum_probs=117.6
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
...++..+..+......++.+-..|+++.- -+|..-+...| +..++.+-+ ...+++....+.+|+++-....+.-+.
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~ 259 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQR 259 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 445566677776555568888777777553 34555666665 666666553 467889999999999999987777777
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~-~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
+++.|++..++-.....++.+-..+..||+|+.-| ....+..+++-..-+-|..+-.+. |.-+|..|+-++.-|++.
T Consensus 260 Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk--Del~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 260 LVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK--DELLRLHACLAVAVLATN 337 (832)
T ss_pred HHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch--HHHHHHHHHHHHhhhhhh
Confidence 88999999999888888888888888899986655 566777888888888887776664 566899999999998865
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.029 Score=50.88 Aligned_cols=112 Identities=15% Similarity=0.109 Sum_probs=80.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-cHHHHHhcCcHHHHHHhhcCC-------CccHHHHHHHHHHHHHHh
Q 015709 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNS-------SFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 217 ~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~-~~~~f~~~gGi~~L~~lL~s~-------~~d~klq~kA~~lL~~L~ 288 (402)
....+++.+.+.+... +.+..|.-.+|.++. -.+.|++.||+..|..+|..- ..+..+...++.++..|+
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3455666676544322 788888888888654 488999999999999998631 134567888999999988
Q ss_pred hcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 289 ~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
.+ .......+...+++..++..|.++++.++..|+..|..++
T Consensus 145 n~-----~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NT-----KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SS-----HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cc-----HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 42 2333445556899999999999999999999999888764
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.53 Score=48.28 Aligned_cols=178 Identities=15% Similarity=0.070 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015709 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (402)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s--~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~L 224 (402)
.+.+..++..+.+++.+.+.-..+.+++.--.++..|.. .+..=|.+|...+..+..-....+ -+-.|.+..++.+
T Consensus 39 ~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~--~~~~~vvralvai 116 (371)
T PF14664_consen 39 KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK--EIPRGVVRALVAI 116 (371)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc--cCCHHHHHHHHHH
Confidence 588899999999999999999999999877777777743 456678999999998886421111 1345788999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHH
Q 015709 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (402)
Q Consensus 225 L~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~ 304 (402)
..+.++..+.-|+-.|.-++-.+|. .+..+||+..|.+.+.++ ...+..-.+..+-++.. .|..+..+.
T Consensus 117 ae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~--~~~~~~~l~~~lL~lLd------~p~tR~yl~ 185 (371)
T PF14664_consen 117 AEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDG--SFSISESLLDTLLYLLD------SPRTRKYLR 185 (371)
T ss_pred HhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhc--cHhHHHHHHHHHHHHhC------Ccchhhhhc
Confidence 9998889999999999999888885 778999999999999875 23366677777778773 567777666
Q ss_pred hCCcHHHHHHhhcCC-------Ch--HHHHHHHHHHHHHhcC
Q 015709 305 DRFFLKSVVDLTASA-------DL--DLQEKALAAIKNLLQL 337 (402)
Q Consensus 305 ~~g~v~~Lv~lL~~~-------d~--dv~E~aL~aL~~L~~~ 337 (402)
..--+..+....... +. +....+..++..++..
T Consensus 186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs 227 (371)
T PF14664_consen 186 PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS 227 (371)
T ss_pred CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc
Confidence 544455554443222 22 3455666666666543
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.89 Score=51.21 Aligned_cols=119 Identities=15% Similarity=0.168 Sum_probs=78.5
Q ss_pred HHHHHHHhh------cCCCCHHHHHHHHHHHHHccCCC----CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015709 133 IQIAIDDLN------NSTLSLEDSQRALQELLILVEPI----DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKAS 202 (402)
Q Consensus 133 Mk~al~~L~------~~~~t~e~k~~AL~~L~~Lve~i----DnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~a 202 (402)
|.=++++|. .+..++-.|..||..+..+++-+ -.++.|..+ ..+.+...++++..-+|++|||+++..+
T Consensus 412 l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f-lv~hVfP~f~s~~g~Lrarac~vl~~~~ 490 (1010)
T KOG1991|consen 412 LSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF-LVNHVFPEFQSPYGYLRARACWVLSQFS 490 (1010)
T ss_pred HHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH-HHHHhhHhhcCchhHHHHHHHHHHHHHH
Confidence 444556665 22234456777777766655422 233444443 4566677888999999999999999999
Q ss_pred cCChHhHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 203 QNNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 203 qNNp~~Q~~~le~g~L~~Ll~LL~-s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
.-+=+.+..+. .++......+. +.+.+|++.|..||.+++.+++.+-..+
T Consensus 491 ~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~ 541 (1010)
T KOG1991|consen 491 SIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKV 541 (1010)
T ss_pred hccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhH
Confidence 43222233332 35666777777 4446899999999999999987664444
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.41 Score=50.30 Aligned_cols=196 Identities=15% Similarity=0.157 Sum_probs=144.5
Q ss_pred HHccCCCCchhHHHhcCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH-HHHHH
Q 015709 158 LILVEPIDNANDLSKLGGLSVLVG-QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEAVK 235 (402)
Q Consensus 158 ~~Lve~iDnA~~l~~lGgl~~Li~-lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~-~vr~k 235 (402)
.+++-+-.||.-++.-.|+..|+. -+++.++-+ ..++.+++|.....|..|+++ +..|..+++.++. +.-..
T Consensus 451 iNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fidy--vgdLa~i~~nd~~E~F~~E 524 (791)
T KOG1222|consen 451 INLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFIDY--VGDLAGIAKNDNSESFGLE 524 (791)
T ss_pred HHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHHH--HHHHHHHhhcCchHHHHHH
Confidence 456677889999999889999986 567777654 578999999988899999975 7788888887664 45788
Q ss_pred HHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHh
Q 015709 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL 315 (402)
Q Consensus 236 Al~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~l 315 (402)
++..++++.-..-+-.+-+...+-+|-+...|+.+.....++...+-++..++. +......+...|+++.++++
T Consensus 525 ClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~------d~~cA~Lla~a~~i~tlieL 598 (791)
T KOG1222|consen 525 CLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR------DLDCARLLAPAKLIDTLIEL 598 (791)
T ss_pred HHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh------hhHHHHHhCccccHHHHHHH
Confidence 999999987655554555557899999999998664444577777777776653 34455566788999999999
Q ss_pred hcCC--ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHH-HHHHHHHHhHHhh
Q 015709 316 TASA--DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDT-ALERLRQQLQEVM 366 (402)
Q Consensus 316 L~~~--d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~-~L~~L~~~~~~l~ 366 (402)
|+.. |.++..+.+-...+++.+. ..|+.+-++..+.. .+..++..+.+.-
T Consensus 599 L~a~QeDDEfV~QiiyVF~Q~l~He-~tr~~miket~~~AylIDLMHDkN~eiR 651 (791)
T KOG1222|consen 599 LQACQEDDEFVVQIIYVFLQFLKHE-LTRRLMIKETALGAYLIDLMHDKNAEIR 651 (791)
T ss_pred HHhhcccchHHHHHHHHHHHHHHHH-HHHHHHHhhccchHHHHHHHhcccHHHH
Confidence 9864 7778888888888888873 45665554655543 4455555555543
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.055 Score=56.50 Aligned_cols=122 Identities=17% Similarity=0.142 Sum_probs=96.5
Q ss_pred CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHH
Q 015709 163 PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVS 241 (402)
Q Consensus 163 ~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~-~~vr~kAl~ALS 241 (402)
-.+|.+++..+|-++.|+.+....+++++......+-+++-. ...+..++..|.+|.|..++.+++ ..+..+.+|-+|
T Consensus 334 f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S 412 (791)
T KOG1222|consen 334 FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLS 412 (791)
T ss_pred hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhc
Confidence 357999999999999999999999999999999999999864 457888999999999999999887 467888999988
Q ss_pred HHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 242 SLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 242 ~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
+ +......|.-...++.+...+-+. .+.++-..-..+.-|||.+
T Consensus 413 ~----dD~~K~MfayTdci~~lmk~v~~~-~~~~vdl~lia~ciNl~ln 456 (791)
T KOG1222|consen 413 C----DDDAKAMFAYTDCIKLLMKDVLSG-TGSEVDLALIALCINLCLN 456 (791)
T ss_pred c----CcHHHHHHHHHHHHHHHHHHHHhc-CCceecHHHHHHHHHHHhc
Confidence 6 344556777777888887766544 2445555555555677754
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.061 Score=57.55 Aligned_cols=84 Identities=13% Similarity=0.191 Sum_probs=62.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~ 255 (402)
...++..-+ .++..+..|+..|....+.-|..++. +|..+++|..+++..+|..|+-.|..+|++++.....+
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv- 97 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV- 97 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-
Confidence 444555544 46889999999999999999999987 46789999999999999999999999999988766654
Q ss_pred hcCcHHHHHHhhcCC
Q 015709 256 VEAGDLMLQDILGNS 270 (402)
Q Consensus 256 ~~gGi~~L~~lL~s~ 270 (402)
..+|+++|+++
T Consensus 98 ----aDvL~QlL~td 108 (556)
T PF05918_consen 98 ----ADVLVQLLQTD 108 (556)
T ss_dssp ----HHHHHHHTT--
T ss_pred ----HHHHHHHHhcc
Confidence 57899999976
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.14 Score=46.35 Aligned_cols=126 Identities=13% Similarity=0.201 Sum_probs=91.5
Q ss_pred HHHHHHcCcHHHHHHhhcCCCH------HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015709 209 QKQVLELGALSKLMKMVKSSFV------EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 209 Q~~~le~g~L~~Ll~LL~s~~~------~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
...|++.||+..|++++.++.. +.-..++.|...+.-|.--..+ .....=+..++........+..+...|+.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHHH
Confidence 3568899999999999998763 3455667777776665332222 22233344555666655457789999999
Q ss_pred HHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChh
Q 015709 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 340 (402)
Q Consensus 283 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~ 340 (402)
.+.+++.+ .+.....+.++=-++.|+.+|...+.++|..++..+-+|...+++
T Consensus 83 ILEs~Vl~-----S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 83 ILESIVLN-----SPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHhC-----CHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99999853 445566677777889999999999999999999999988877544
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.012 Score=38.25 Aligned_cols=29 Identities=31% Similarity=0.573 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQN 204 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN 204 (402)
+|.+++++++++++||..|+++||.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999864
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.6 Score=52.46 Aligned_cols=217 Identities=15% Similarity=0.146 Sum_probs=117.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCH-----------------HHHHHHHHHHHH-ccCCCCchhHHHhcCC
Q 015709 114 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSL-----------------EDSQRALQELLI-LVEPIDNANDLSKLGG 175 (402)
Q Consensus 114 ~~~L~ea~~~l~~~~d~~lMk~al~~L~~~~~t~-----------------e~k~~AL~~L~~-Lve~iDnA~~l~~lGg 175 (402)
|.+|++..-.+...+..+.++-.++.|.+..-+. +..+...++|.. ++..-+.-+++..+|.
T Consensus 30 m~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~L 109 (1233)
T KOG1824|consen 30 MTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGL 109 (1233)
T ss_pred HHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHH
Confidence 4455554433444556777777777776653211 111222333332 2444556677777654
Q ss_pred HHHHHHhcCC-------------------------CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH
Q 015709 176 LSVLVGQLNH-------------------------PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV 230 (402)
Q Consensus 176 l~~Li~lL~s-------------------------~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~ 230 (402)
...+.++=-+ +...|+.-++.+++-..++--..--. ...+.+..++.-+.+.-.
T Consensus 110 ktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~ 188 (1233)
T KOG1824|consen 110 KTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRL 188 (1233)
T ss_pred HHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHH
Confidence 3333322211 12235555555555555442111111 122344445555555556
Q ss_pred HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHH
Q 015709 231 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 310 (402)
Q Consensus 231 ~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~ 310 (402)
.+|+||+++||.+.-..+. ..| .+.++.|..-|..+ +....-+--..+|..++.+. ...... .-...++
T Consensus 189 aVrKkai~~l~~la~~~~~--~ly--~~li~~Ll~~L~~~-~q~~~~rt~Iq~l~~i~r~a----g~r~~~--h~~~ivp 257 (1233)
T KOG1824|consen 189 AVRKKAITALGHLASSCNR--DLY--VELIEHLLKGLSNR-TQMSATRTYIQCLAAICRQA----GHRFGS--HLDKIVP 257 (1233)
T ss_pred HHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHhccCCC-CchHHHHHHHHHHHHHHHHh----cchhhc--ccchhhH
Confidence 7899999999998765432 222 24455566656544 23333444566777777642 111111 1235677
Q ss_pred HHHHhh---cCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 015709 311 SVVDLT---ASADLDLQEKALAAIKNLLQLRTTEALVL 345 (402)
Q Consensus 311 ~Lv~lL---~~~d~dv~E~aL~aL~~L~~~~~~~~~~~ 345 (402)
.+++.. ..+|.+++|..+.++..++.. |++.+
T Consensus 258 ~v~~y~~~~e~~dDELrE~~lQale~fl~r---cp~ei 292 (1233)
T KOG1824|consen 258 LVADYCNKIEEDDDELREYCLQALESFLRR---CPKEI 292 (1233)
T ss_pred HHHHHhcccccCcHHHHHHHHHHHHHHHHh---Chhhh
Confidence 777777 677899999999999999864 55544
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.58 Score=46.39 Aligned_cols=125 Identities=19% Similarity=0.237 Sum_probs=82.8
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEM 253 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s-~~~~vr~kAl~ALS~LiR~~~~~~~~ 253 (402)
.++++..+|.+.++.+|..|+.+||.+- +| ..++.|+.++.. .+..+|..|.++|..+- .+.
T Consensus 75 av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~---------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~--~~~---- 137 (335)
T COG1413 75 AVPLLRELLSDEDPRVRDAAADALGELG--DP---------EAVPPLVELLENDENEGVRAAAARALGKLG--DER---- 137 (335)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch---------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcC--chh----
Confidence 5788889999999999999999888874 33 368999999995 66789999999999763 222
Q ss_pred HHhcCcHHHHHHhhcCCC----------ccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHH
Q 015709 254 FYVEAGDLMLQDILGNSS----------FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDL 323 (402)
Q Consensus 254 f~~~gGi~~L~~lL~s~~----------~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv 323 (402)
++..|...++++. ....+|..++..+..+- +...++.+...+...+.++
T Consensus 138 -----a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~----------------~~~~~~~l~~~l~~~~~~v 196 (335)
T COG1413 138 -----ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG----------------DPEAIPLLIELLEDEDADV 196 (335)
T ss_pred -----hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC----------------ChhhhHHHHHHHhCchHHH
Confidence 2566666666542 11123444555544432 2334455555566665566
Q ss_pred HHHHHHHHHHHhcC
Q 015709 324 QEKALAAIKNLLQL 337 (402)
Q Consensus 324 ~E~aL~aL~~L~~~ 337 (402)
+..+..+|..+...
T Consensus 197 r~~Aa~aL~~~~~~ 210 (335)
T COG1413 197 RRAAASALGQLGSE 210 (335)
T ss_pred HHHHHHHHHHhhcc
Confidence 66666666666554
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.18 Score=54.57 Aligned_cols=151 Identities=13% Similarity=0.076 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHh------cC-CHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK------LG-GLSVLVGQLNHPDTDIRKISAWILGKAS 202 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~------lG-gl~~Li~lL~s~~~~Ir~~Aa~vLg~~a 202 (402)
++++..+.+.|.+++.+ -.+.|+.+|..++|+. |.-+.. +. .+|.++++.+|++|.||..|..|+-...
T Consensus 127 pelLp~L~~~L~s~d~n--~~EgA~~AL~KIcEDs--a~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYN--TCEGAFGALQKICEDS--AQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFI 202 (885)
T ss_pred hhHHHHHHHHhcCCccc--ccchhHHHHHHHHhhh--HHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhee
Confidence 56777788888876532 3456777777777753 222222 22 4788899999999999999999998887
Q ss_pred cCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH--hcCcHHHHHHhhcCCCccHHHHHHH
Q 015709 203 QNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY--VEAGDLMLQDILGNSSFEIRLHRKA 280 (402)
Q Consensus 203 qNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~--~~gGi~~L~~lL~s~~~d~klq~kA 280 (402)
-.++..-..-++ ..++.|..+.++++++||+..+.|+.-++.-.+. .+. -.|.++.+.+.-++. |..+...|
T Consensus 203 ~~~~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d---kl~phl~~IveyML~~tqd~--dE~VALEA 276 (885)
T KOG2023|consen 203 IIQTQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD---KLVPHLDNIVEYMLQRTQDV--DENVALEA 276 (885)
T ss_pred ecCcHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH---hcccchHHHHHHHHHHccCc--chhHHHHH
Confidence 665432222222 4678888899888899999999999998876554 333 246778877777765 56688999
Q ss_pred HHHHHHHhhc
Q 015709 281 VSLVGDLAKC 290 (402)
Q Consensus 281 ~~lL~~L~~~ 290 (402)
+-+...++.+
T Consensus 277 CEFwla~aeq 286 (885)
T KOG2023|consen 277 CEFWLALAEQ 286 (885)
T ss_pred HHHHHHHhcC
Confidence 9999999853
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.44 Score=52.76 Aligned_cols=160 Identities=14% Similarity=0.186 Sum_probs=102.0
Q ss_pred HhHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015709 112 KRQMEIKELMEKLK-TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190 (402)
Q Consensus 112 ~r~~~L~ea~~~l~-~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~I 190 (402)
+|.+-+|..+..|. |.+-..+.-..++... +.+.|.|.-.---|+.+-+ ... +...+ .+..+.+=|.++|+.|
T Consensus 35 ~kidAmK~iIa~M~~G~dmssLf~dViK~~~--trd~ElKrL~ylYl~~yak-~~P--~~~lL-avNti~kDl~d~N~~i 108 (757)
T COG5096 35 KKIDAMKKIIAQMSLGEDMSSLFPDVIKNVA--TRDVELKRLLYLYLERYAK-LKP--ELALL-AVNTIQKDLQDPNEEI 108 (757)
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHhc-cCH--HHHHH-HHHHHHhhccCCCHHH
Confidence 45566666666663 4443333333333333 2244544333222222222 111 22211 4566777788999999
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015709 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (402)
Q Consensus 191 r~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (402)
|..|.+.++.+= -++.- ...++++.+++.++++-||..|+.||..+-+-.+ +.+.+.|-+..+..++.+.
T Consensus 109 R~~AlR~ls~l~--~~el~-----~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~~D~ 178 (757)
T COG5096 109 RGFALRTLSLLR--VKELL-----GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELVADS 178 (757)
T ss_pred HHHHHHHHHhcC--hHHHH-----HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHhhCC
Confidence 999999998874 22222 2467899999999999999999999999876544 4666778888888888765
Q ss_pred CccHHHHHHHHHHHHHHhh
Q 015709 271 SFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 271 ~~d~klq~kA~~lL~~L~~ 289 (402)
++.+.+.|...+..+..
T Consensus 179 --dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 179 --DPIVIANALASLAEIDP 195 (757)
T ss_pred --CchHHHHHHHHHHHhch
Confidence 67788888888887754
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.37 Score=46.91 Aligned_cols=196 Identities=14% Similarity=0.105 Sum_probs=122.9
Q ss_pred CHHHHHHHHHHHHHccCCCC-chhHH-HhcCCHHHHHHh-------cCCCC--H---HHHHHHHHHHHHHhcCChHhHHH
Q 015709 146 SLEDSQRALQELLILVEPID-NANDL-SKLGGLSVLVGQ-------LNHPD--T---DIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iD-nA~~l-~~lGgl~~Li~l-------L~s~~--~---~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
+++.|+.|+.+|..--+..+ .|--+ +..|-+..|++- |..++ + .--..|..++-.+|+ +|+.+..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 46889999999998777754 34333 345666666542 33222 2 222444455555665 8999999
Q ss_pred HHHcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCC-hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015709 212 VLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~~-----~~vr~kAl~ALS~LiR~~-~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~ 285 (402)
|++....-.|.-+|+..+ +-+|..++.-|++++..+ +....-+....-++...+.+..+ +...|.-|.|.+.
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G--selSKtvAtfIlq 164 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG--SELSKTVATFILQ 164 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS---HHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc--cHHHHHHHHHHHH
Confidence 999987666666666543 235889999999999874 45555566788999999999875 4567889999999
Q ss_pred HHhhcc--cccCCCCcchhHHh-CCcHHHHHH-hhcCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015709 286 DLAKCQ--LENMHKVEPPLFRD-RFFLKSVVD-LTASADLDLQEKALAAIKNLLQLRTTEALVLK 346 (402)
Q Consensus 286 ~L~~~~--l~~~~~~~~~~l~~-~g~v~~Lv~-lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~ 346 (402)
-+.... +... -...+.|.. ..++..++. +...+++.+..++.++-..|..++. .+..++
T Consensus 165 KIL~dd~GL~yi-C~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr-ar~aL~ 227 (262)
T PF04078_consen 165 KILLDDVGLNYI-CQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR-AREALR 227 (262)
T ss_dssp HHHHSHHHHHHH-TSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT-HHHHHH
T ss_pred HHHcchhHHHHH-hcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH-HHHHHH
Confidence 887532 1000 011122211 223333343 4456689999999999999998764 444443
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.98 Score=49.71 Aligned_cols=228 Identities=11% Similarity=0.038 Sum_probs=138.8
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCH------------HHHHHhcCCCCHHHHHHHH
Q 015709 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGL------------SVLVGQLNHPDTDIRKISA 195 (402)
Q Consensus 128 ~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl------------~~Li~lL~s~~~~Ir~~Aa 195 (402)
+=+.-+..+-++|.|.......|..|--.|-+-+..-|....-.=..-| .-++.-|.++.|.....|+
T Consensus 32 nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aa 111 (859)
T KOG1241|consen 32 NFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAA 111 (859)
T ss_pred cHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHH
Confidence 3455666777777777666666666666666655444432211100001 1234566788888889999
Q ss_pred HHHHHHhcC-ChHhHHHHHHcCcHHHHHHhhcCCCHH-HHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCcc
Q 015709 196 WILGKASQN-NPLVQKQVLELGALSKLMKMVKSSFVE-EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFE 273 (402)
Q Consensus 196 ~vLg~~aqN-Np~~Q~~~le~g~L~~Ll~LL~s~~~~-vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d 273 (402)
.|++.+|.- =|..|= -+.++.|+....++.+. ++..++-||+-++.+-.+..-.=.....+..+++-.....++
T Consensus 112 q~va~IA~~ElP~n~w----p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s 187 (859)
T KOG1241|consen 112 QCVAAIACIELPQNQW----PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETS 187 (859)
T ss_pred HHHHHHHHhhCchhhC----HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCc
Confidence 999988742 111110 14566666666665544 789999999999988544311111234666666666654456
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcC---C
Q 015709 274 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFC---G 350 (402)
Q Consensus 274 ~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~---G 350 (402)
..+|.-|..+|.+=..-. ...+...-..+-+++.+++.-.++|..++.+|+.+|..+++.- -+.+...- =
T Consensus 188 ~~vRLaa~~aL~nsLef~----~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~Ly---Y~~m~~yM~~al 260 (859)
T KOG1241|consen 188 AAVRLAALNALYNSLEFT----KANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLY---YEFMEPYMEQAL 260 (859)
T ss_pred hhHHHHHHHHHHHHHHHH----HHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 778889998888644211 1111112223445667778888999999999999999998752 22222111 1
Q ss_pred cHHHHHHHHHHhHHhh
Q 015709 351 LDTALERLRQQLQEVM 366 (402)
Q Consensus 351 L~~~L~~L~~~~~~l~ 366 (402)
+.-++..+++++++..
T Consensus 261 faitl~amks~~deVa 276 (859)
T KOG1241|consen 261 FAITLAAMKSDNDEVA 276 (859)
T ss_pred HHHHHHHHcCCcHHHH
Confidence 3456788888888754
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.16 Score=49.41 Aligned_cols=101 Identities=18% Similarity=0.080 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc
Q 015709 149 DSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 226 (402)
Q Consensus 149 ~k~~AL~~L~~Lve-~iDnA~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~ 226 (402)
....||+.|+.++- +.+...-|+..+++..|+++| .+..+.|+..+..++-.+.-.+|.++..|-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 46678999999774 356677899999999999999 4567999999999999999999999999999999999999999
Q ss_pred CCC--HHHHHHHHHHHHHHhcCChh
Q 015709 227 SSF--VEEAVKALYTVSSLIRNNLA 249 (402)
Q Consensus 227 s~~--~~vr~kAl~ALS~LiR~~~~ 249 (402)
+.+ .++|.|.+--|--.+-.-.+
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~E~~ 211 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMPETP 211 (257)
T ss_pred cccccHHHhHHHHHHHHHHHcccCC
Confidence 875 56788877666655544333
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.44 Score=43.45 Aligned_cols=90 Identities=20% Similarity=0.180 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhc-C-cHHHHH
Q 015709 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE-A-GDLMLQ 264 (402)
Q Consensus 187 ~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~-g-Gi~~L~ 264 (402)
+|.||..+.-++|-++...|..-+ ..+|.+...|+++++.+|..|+..|+.|+.+.. ++. | .+..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~------ik~k~~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM------IKVKGQLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc------eeehhhhhHHHH
Confidence 588999999999999988775444 357999999999999999999999999987632 222 2 225566
Q ss_pred HhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 265 DILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 265 ~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
.++.++ ++.++.-|..++..+..
T Consensus 70 ~~l~D~--~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 70 KLLVDE--NPEIRSLARSFFSELLK 92 (178)
T ss_pred HHHcCC--CHHHHHHHHHHHHHHHH
Confidence 777765 67899999999999875
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.15 Score=47.70 Aligned_cols=132 Identities=14% Similarity=0.029 Sum_probs=84.5
Q ss_pred HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH
Q 015709 151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV 230 (402)
Q Consensus 151 ~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~ 230 (402)
..|+..+..++......-+-+--..+|+|+..+.+++.-|+..|..+|.+++++.+..... .++.+....++.++
T Consensus 71 ~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~ 145 (228)
T PF12348_consen 71 KTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNP 145 (228)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-H
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCH
Confidence 4677777777765544422222335788999999999999999999999999987622221 14666677888889
Q ss_pred HHHHHHHHHHHHHhcCChhcHHHHHh----cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 231 EEAVKALYTVSSLIRNNLAGQEMFYV----EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 231 ~vr~kAl~ALS~LiR~~~~~~~~f~~----~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
.+|..++-.+..++..++.....+-. ..-++.+..++.+. ++.+|..|-.++..+..
T Consensus 146 ~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~--~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 146 QVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDA--DPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHH
Confidence 99999999999988887722222211 23556777778776 67788888888887754
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.081 Score=43.87 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=50.7
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLI 244 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~--g~L~~Ll~LL~s~~~~vr~kAl~ALS~Li 244 (402)
-++|++.++..++..||..||.+|.+++.. .+..++.+ ..++.|.+++.+.++.||..| .-|-.++
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 489999999999999999999999999964 44555543 567888888888777777555 4444443
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.31 Score=48.37 Aligned_cols=92 Identities=18% Similarity=0.157 Sum_probs=74.7
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH
Q 015709 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (402)
Q Consensus 174 Ggl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~ 253 (402)
-.++.++.++.+++..+|..|++.++..... -++|.|..++.+.+..+|..|+++|+.+ +++.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~--~~~~---- 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGEL--GDPE---- 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHcc--CChh----
Confidence 4688889999999999999999998777632 3689999999999999999999988876 3343
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015709 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~ 288 (402)
.++.|+.++..+ .+..+|..++++|..+-
T Consensus 106 -----a~~~li~~l~~d-~~~~vR~~aa~aL~~~~ 134 (335)
T COG1413 106 -----AVPPLVELLEND-ENEGVRAAAARALGKLG 134 (335)
T ss_pred -----HHHHHHHHHHcC-CcHhHHHHHHHHHHhcC
Confidence 556778888852 36789999999999874
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.57 Score=48.48 Aligned_cols=109 Identities=16% Similarity=0.121 Sum_probs=81.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHh-------------HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLV-------------QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 242 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~-------------Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~ 242 (402)
+..|+.+|.+ +++...|+..++.+....+.+ ++.|.. -.+|+|++-.++.+.+.+..-+.|||.
T Consensus 273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 4556777766 788899999999999874433 333332 368999999988777788999999999
Q ss_pred HhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 243 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 243 LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
++++-|...-.=.-..-+++|.+.|..+ +..++.-++..+..++.
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~--~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLSLP--DADVLLSSLETLKMILE 394 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Confidence 9998775332222245788999999876 55688899999998885
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=94.79 E-value=4.4 Score=41.07 Aligned_cols=151 Identities=17% Similarity=0.123 Sum_probs=107.5
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC---cHHHH
Q 015709 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA---GDLML 263 (402)
Q Consensus 187 ~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g---Gi~~L 263 (402)
++++--.+-.+|..++.. +.+-..+++...+-.+.+.+..++=++...|...+..+...|+.....|+..+ =+...
T Consensus 136 ~~dial~~g~mlRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~ 214 (335)
T PF08569_consen 136 NPDIALNCGDMLRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKY 214 (335)
T ss_dssp STTTHHHHHHHHHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHH
T ss_pred CccccchHHHHHHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666654 44555666677777788888777778899999999998888888888888765 34577
Q ss_pred HHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCc-chhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhH
Q 015709 264 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA 342 (402)
Q Consensus 264 ~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~-~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~ 342 (402)
..+|.++ +.=.|+.++-+|+.|.... .+... ...+.+..-++.++.+|+++...+|-.|-....-.+..+.+.+
T Consensus 215 ~~Ll~s~--NYvtkrqslkLL~ellldr---~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~ 289 (335)
T PF08569_consen 215 NKLLESS--NYVTKRQSLKLLGELLLDR---SNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPP 289 (335)
T ss_dssp HHHCT-S--SHHHHHHHHHHHHHHHHSG---GGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BH
T ss_pred HHHccCC--CeEeehhhHHHHHHHHHch---hHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCCh
Confidence 7888887 4558999999999998531 12111 2344466788999999999999999999999999988876544
Q ss_pred H
Q 015709 343 L 343 (402)
Q Consensus 343 ~ 343 (402)
.
T Consensus 290 ~ 290 (335)
T PF08569_consen 290 P 290 (335)
T ss_dssp H
T ss_pred H
Confidence 3
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.92 Score=51.07 Aligned_cols=190 Identities=17% Similarity=0.130 Sum_probs=107.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHH-HHHHhcCCCCHHHHHHHHHHHHHHhcCCh-Hh
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLS-VLVGQLNHPDTDIRKISAWILGKASQNNP-LV 208 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~-~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp-~~ 208 (402)
.+.++.+..+.++..+.-.|+-|+-.|-++ +...+.....+++ .++..++|++++|+..|+.+||+++-+|- ..
T Consensus 817 s~a~kl~~~~~s~~s~~~ikvfa~LslGEl----gr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~y 892 (1233)
T KOG1824|consen 817 SLATKLIQDLQSPKSSDSIKVFALLSLGEL----GRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKY 892 (1233)
T ss_pred hHHHHHHHHHhCCCCchhHHHHHHhhhhhh----ccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhH
Confidence 345556666666665656677777666653 3333333333444 56789999999999999999999998542 11
Q ss_pred HHHHHHc----------------------------CcHHHHHHhhcCC----CHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015709 209 QKQVLEL----------------------------GALSKLMKMVKSS----FVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (402)
Q Consensus 209 Q~~~le~----------------------------g~L~~Ll~LL~s~----~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 256 (402)
--.+++. -.++.++.+|... .+..|.-..-+|+-++-.+|.
T Consensus 893 Lpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe------- 965 (1233)
T KOG1824|consen 893 LPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE------- 965 (1233)
T ss_pred HHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH-------
Confidence 1111110 1122222222211 011222223333333332221
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 257 ~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
--++.|...+.++. ...|.-++.++.+.... ++.-.+.+.. ..+.....+++.+|..++..|+.++.+.+.
T Consensus 966 -sLlpkL~~~~~S~a--~~~rs~vvsavKfsisd-----~p~~id~~lk-~~ig~fl~~~~dpDl~VrrvaLvv~nSaah 1036 (1233)
T KOG1824|consen 966 -SLLPKLKLLLRSEA--SNTRSSVVSAVKFSISD-----QPQPIDPLLK-QQIGDFLKLLRDPDLEVRRVALVVLNSAAH 1036 (1233)
T ss_pred -HHHHHHHHHhcCCC--cchhhhhhheeeeeecC-----CCCccCHHHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHc
Confidence 12455566666653 33566666666666532 3343333333 346677788999999999999999999988
Q ss_pred CChh
Q 015709 337 LRTT 340 (402)
Q Consensus 337 ~~~~ 340 (402)
+.+.
T Consensus 1037 NKps 1040 (1233)
T KOG1824|consen 1037 NKPS 1040 (1233)
T ss_pred cCHh
Confidence 7544
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.48 Score=51.45 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=112.4
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH-HHHc---CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ-VLEL---GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 250 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~-~le~---g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~ 250 (402)
++|.|..+|.+++......|..+|..++...+..-+. +... -.+|++++++++.++.+|..|+.++-..+-..+.+
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa 208 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA 208 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH
Confidence 4556667889999999999999999999876543222 1111 25899999999999999999999998866554332
Q ss_pred ----HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHH
Q 015709 251 ----QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK 326 (402)
Q Consensus 251 ----~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~ 326 (402)
.+.|+ +.|..+-.+ .++.+|...+..+..|..-. .....+.+ .++++.+.......|..+--.
T Consensus 209 l~~~iD~Fl-----e~lFalanD--~~~eVRk~vC~alv~Llevr----~dkl~phl--~~IveyML~~tqd~dE~VALE 275 (885)
T KOG2023|consen 209 LYVHIDKFL-----EILFALAND--EDPEVRKNVCRALVFLLEVR----PDKLVPHL--DNIVEYMLQRTQDVDENVALE 275 (885)
T ss_pred HHHHHHHHH-----HHHHHHccC--CCHHHHHHHHHHHHHHHHhc----HHhcccch--HHHHHHHHHHccCcchhHHHH
Confidence 22232 333333333 36789999999999998531 11222222 578888888888888888888
Q ss_pred HHHHHHHHhcCChhhHHHHH
Q 015709 327 ALAAIKNLLQLRTTEALVLK 346 (402)
Q Consensus 327 aL~aL~~L~~~~~~~~~~~~ 346 (402)
|.....+++..+ .|+.++.
T Consensus 276 ACEFwla~aeqp-i~~~~L~ 294 (885)
T KOG2023|consen 276 ACEFWLALAEQP-ICKEVLQ 294 (885)
T ss_pred HHHHHHHHhcCc-CcHHHHH
Confidence 888889999887 5777665
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.064 Score=34.71 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=26.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015709 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (402)
Q Consensus 218 L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~ 246 (402)
+|.++++++++++.||..|+++|+.++++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.17 Score=39.91 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhc
Q 015709 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (402)
Q Consensus 191 r~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~ 257 (402)
...|.|++|+++.. |.-...+.+.+.++.++++..+.+ ..+|--|.|+|+=+.+ .+.+.+.+.+.
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~ 69 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDEL 69 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHc
Confidence 46799999999984 555566667899999999999766 5889999999996655 55655555443
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.84 Score=49.95 Aligned_cols=143 Identities=13% Similarity=0.209 Sum_probs=86.0
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH----HHHc-----------------------------CcHHHH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ----VLEL-----------------------------GALSKL 221 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~----~le~-----------------------------g~L~~L 221 (402)
.+|.|..=|..++|.|+..|..||..+|.-||+.--. |.+. ..+|+|
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLiepl 261 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPI 261 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHH
Confidence 4677788888999999999999999999887732110 0110 234444
Q ss_pred HHhhcC-------------------------------------------CCHHHHHHHHHHHHHHhcCChhcHHHHHhcC
Q 015709 222 MKMVKS-------------------------------------------SFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 258 (402)
Q Consensus 222 l~LL~s-------------------------------------------~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g 258 (402)
..++.+ +++..+--.+.|+|-+...||.+.+++.
T Consensus 262 t~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k--- 338 (877)
T KOG1059|consen 262 TELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK--- 338 (877)
T ss_pred HHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH---
Confidence 444333 3334444556666666666666555543
Q ss_pred cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhh-cCCChHHHHHHHHHHHHHhc
Q 015709 259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT-ASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 259 Gi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL-~~~d~dv~E~aL~aL~~L~~ 336 (402)
++++.||.+. |+.+|.+|+-+++-++.. ..... +++.|...+ ..+....+...+.-+..+++
T Consensus 339 --dlIlrcL~Dk--D~SIRlrALdLl~gmVsk-------kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS 401 (877)
T KOG1059|consen 339 --DLILRCLDDK--DESIRLRALDLLYGMVSK-------KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICS 401 (877)
T ss_pred --HHHHHHhccC--CchhHHHHHHHHHHHhhh-------hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhh
Confidence 5678888875 667888999999988742 22222 334444433 33334566555555544444
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.2 Score=45.80 Aligned_cols=83 Identities=14% Similarity=0.118 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc-CC---CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015709 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SS---FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 262 (402)
Q Consensus 187 ~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~-s~---~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~ 262 (402)
-+.|-..|+.++.+...|.|.+-..+.+.|.++.+++-+. .. +.++-...-.+|++++= |..+.++|.+.+.++.
T Consensus 122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~ 200 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDK 200 (379)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHH
Confidence 4789999999999999999999999999999999999888 33 23444455566666665 5688999999999999
Q ss_pred HHHhhcCC
Q 015709 263 LQDILGNS 270 (402)
Q Consensus 263 L~~lL~s~ 270 (402)
+.+++.++
T Consensus 201 ~f~if~s~ 208 (379)
T PF06025_consen 201 LFEIFTSP 208 (379)
T ss_pred HHHHhCCH
Confidence 99998875
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.93 Score=45.67 Aligned_cols=198 Identities=15% Similarity=0.154 Sum_probs=132.8
Q ss_pred HHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHccCCCC-ch----hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015709 130 AQLIQIAIDDLNNSTL--SLEDSQRALQELLILVEPID-NA----NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKAS 202 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~--t~e~k~~AL~~L~~Lve~iD-nA----~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~a 202 (402)
+-+....+.+|.-.-. +.-.|.-++..+-.++|+.| |+ ...++.|.++.++.++..++.++-..|...|..++
T Consensus 77 ahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikria 156 (524)
T KOG4413|consen 77 AHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIA 156 (524)
T ss_pred hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 4445555555544322 22357788888989999888 33 24456788899999999999999999999999998
Q ss_pred cCChHhHHHHHHcCcHHHH--HHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 015709 203 QNNPLVQKQVLELGALSKL--MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA 280 (402)
Q Consensus 203 qNNp~~Q~~~le~g~L~~L--l~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA 280 (402)
- -|..-+.+.+.+.+..+ ..+....+.-+|...+.-|--+-.-+|.........|-+..|..=|+.. .|.-++..+
T Consensus 157 l-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt-eDtLVianc 234 (524)
T KOG4413|consen 157 L-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT-EDTLVIANC 234 (524)
T ss_pred h-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC-cceeehhhH
Confidence 5 56666777776655443 2333333333455544444333333556666777788888888888875 366688899
Q ss_pred HHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHH--HHHHHHHHHh
Q 015709 281 VSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQE--KALAAIKNLL 335 (402)
Q Consensus 281 ~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E--~aL~aL~~L~ 335 (402)
.-+++.|+.. ...++++-+.|++..+.+.+...|.+--+ .++.....+.
T Consensus 235 iElvteLaet------eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkff 285 (524)
T KOG4413|consen 235 IELVTELAET------EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFF 285 (524)
T ss_pred HHHHHHHHHH------hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHh
Confidence 9999999852 35567788899999999988765444333 3444444444
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.38 E-value=2.5 Score=46.57 Aligned_cols=161 Identities=14% Similarity=0.147 Sum_probs=107.1
Q ss_pred HhHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015709 112 KRQMEIKELMEKLK-TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190 (402)
Q Consensus 112 ~r~~~L~ea~~~l~-~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~I 190 (402)
+|+.-+|+++..|+ |+|-..+--.-++-.... +.+.|.-.-.-+. +.-..+-....+.+..++.=..++++.|
T Consensus 29 kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~--dlelKKlvyLYl~----nYa~~~P~~a~~avnt~~kD~~d~np~i 102 (734)
T KOG1061|consen 29 KRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTR--DLELKKLVYLYLM----NYAKGKPDLAILAVNTFLKDCEDPNPLI 102 (734)
T ss_pred hHHHHHHHHHhcCccCcchHhhhHHHHhhcccC--CchHHHHHHHHHH----HhhccCchHHHhhhhhhhccCCCCCHHH
Confidence 68888899998886 444233322222222222 2344433222222 2222233334556667777778899999
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015709 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (402)
Q Consensus 191 r~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (402)
|..|.+.+|.+- -++..+. ...+|...++++.+-+|..|...+..+-+-+ .+.+...|-++.|..++.+.
T Consensus 103 R~lAlrtm~~l~--v~~i~ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~ 172 (734)
T KOG1061|consen 103 RALALRTMGCLR--VDKITEY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDS 172 (734)
T ss_pred HHHHhhceeeEe--ehHHHHH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCC
Confidence 999998888775 3444443 4689999999999999999988888875444 35777889999999999964
Q ss_pred CccHHHHHHHHHHHHHHhhc
Q 015709 271 SFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 271 ~~d~klq~kA~~lL~~L~~~ 290 (402)
++-+...|+.++..+...
T Consensus 173 --~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 173 --NPMVVANALAALSEIHES 190 (734)
T ss_pred --CchHHHHHHHHHHHHHHh
Confidence 556888999999988753
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=94.29 E-value=2 Score=39.02 Aligned_cols=90 Identities=20% Similarity=0.143 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCc-HHHHHHhhc
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGA-LSKLMKMVK 226 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~-L~~Ll~LL~ 226 (402)
.-|..++-.+-+++-...+.-+ .-++.+..+|+++++.||..|..+|..+.+++. +--.|- +..++.++.
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~ve----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLVE----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKLLV 73 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHHH----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHHHc
Confidence 4455666666665544432211 136778899999999999999999999987643 111133 488888998
Q ss_pred CCCHHHHHHHHHHHHHHhcC
Q 015709 227 SSFVEEAVKALYTVSSLIRN 246 (402)
Q Consensus 227 s~~~~vr~kAl~ALS~LiR~ 246 (402)
++++++|..|...+..+...
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999998876
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.24 E-value=3.8 Score=44.13 Aligned_cols=173 Identities=16% Similarity=0.138 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc--CChHhHHHHHHcCcHHHHHHhh
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ--NNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aq--NNp~~Q~~~le~g~L~~Ll~LL 225 (402)
..|..+++-+.-+.+..+-.-.++--..+|.+..-|..+.++||..+-.+|-.++. .||..|. .+|.|++-+
T Consensus 269 rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~------~ip~Lld~l 342 (569)
T KOG1242|consen 269 RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQK------IIPTLLDAL 342 (569)
T ss_pred hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHH------HHHHHHHHh
Confidence 35777888887777666666666667788999999999999999999999977765 5777665 469999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC--CccHHHHHHHHHHHHHHhhcccccCCCCcchhH
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 303 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~--~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l 303 (402)
.+++.. -.+++..|+.-. +- .+++.-.+.+++.+|+.. .-+..++++++-.+.|+|.. -.++....-+
T Consensus 343 ~dp~~~-~~e~~~~L~~tt--FV----~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~L---veDp~~lapf 412 (569)
T KOG1242|consen 343 ADPSCY-TPECLDSLGATT--FV----AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKL---VEDPKDLAPF 412 (569)
T ss_pred cCcccc-hHHHHHhhccee--ee----eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh---hcCHHHHhhh
Confidence 875522 223444444311 11 223344555556655431 01334689999999999963 1233222211
Q ss_pred HhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 304 RDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 304 ~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
. .-+++.+-..+....+++|+.+.+||+.+...
T Consensus 413 l-~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 413 L-PSLLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred H-HHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 1 12445555555666899999999999988764
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.17 E-value=3.5 Score=43.09 Aligned_cols=181 Identities=17% Similarity=0.133 Sum_probs=130.7
Q ss_pred HHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhc--CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc
Q 015709 150 SQRALQELLILVEP-IDNANDLSKLGGLSVLVGQL--NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 226 (402)
Q Consensus 150 k~~AL~~L~~Lve~-iDnA~~l~~lGgl~~Li~lL--~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~ 226 (402)
....+..++++++- .+.+...++.|.+.-|+.=+ +.+-...+.+|..+++-+-||+...+...-..+|+..|++-+.
T Consensus 199 v~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la 278 (536)
T KOG2734|consen 199 VHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLA 278 (536)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcc
Confidence 45677777777763 24456667777777776633 4467788999999999999999999999989999999987665
Q ss_pred C----CC-----HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCC
Q 015709 227 S----SF-----VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 297 (402)
Q Consensus 227 s----~~-----~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~ 297 (402)
- ++ .+.-....-+|+++++. +.+...|....|++...-+++.++ ..+--|...|-+...+. ...
T Consensus 279 ~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr~Kk---~sr~SalkvLd~am~g~---~gt 351 (536)
T KOG2734|consen 279 VYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLMLREKK---VSRGSALKVLDHAMFGP---EGT 351 (536)
T ss_pred hhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHHHHHH---HhhhhHHHHHHHHHhCC---Cch
Confidence 2 21 23456888899999985 788999999999999888887642 34666777787776531 122
Q ss_pred CcchhHHhCCcHHHHHHhhc-C---------CChHHHHHHHHHHHHHhcC
Q 015709 298 VEPPLFRDRFFLKSVVDLTA-S---------ADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 298 ~~~~~l~~~g~v~~Lv~lL~-~---------~d~dv~E~aL~aL~~L~~~ 337 (402)
..+..|++.+.++.+.-+.. . .-.+.-|++...|+++...
T Consensus 352 ~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 352 PNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred HHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 45667777777766654432 1 1346778999888887763
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.49 Score=51.30 Aligned_cols=178 Identities=18% Similarity=0.116 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCC--------------HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH-----h
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGG--------------LSVLVGQLNHPDTDIRKISAWILGKASQNNPL-----V 208 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGg--------------l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~-----~ 208 (402)
.+++.+.+.|-+++++-|..--=+...| ....+..+..++..||..|...+.-..+-.|. .
T Consensus 194 ~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 194 HDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred ccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 4566777778888877775522222333 45566788889999999986555444433320 1
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcH----------------------HH-------------
Q 015709 209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ----------------------EM------------- 253 (402)
Q Consensus 209 Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~----------------------~~------------- 253 (402)
-+.=+.-.++..+...+++-+-.+|+.|.-+|+.+-.-+.... +.
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW 353 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence 1111112356667777766655555555444444322111111 11
Q ss_pred ---------------HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcC
Q 015709 254 ---------------FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 318 (402)
Q Consensus 254 ---------------f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~ 318 (402)
++.+|+-..+++.|.+. -..+|+.|+..++.|+.+ .|.+.. ..+..|+++++.
T Consensus 354 ~advpsee~d~~~~siI~sGACGA~VhGlEDE--f~EVR~AAV~Sl~~La~s-----sP~FA~-----~aldfLvDMfND 421 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIPSGACGALVHGLEDE--FYEVRRAAVASLCSLATS-----SPGFAV-----RALDFLVDMFND 421 (823)
T ss_pred cccCchhhccccccccccccccceeeeechHH--HHHHHHHHHHHHHHHHcC-----CCCcHH-----HHHHHHHHHhcc
Confidence 22233445667777664 345788999999999853 344332 356789999999
Q ss_pred CChHHHHHHHHHHHHHhcC
Q 015709 319 ADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 319 ~d~dv~E~aL~aL~~L~~~ 337 (402)
+..++|.+|+.+|..++.+
T Consensus 422 E~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 422 EIEVVRLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988765
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=93.97 E-value=2.9 Score=41.23 Aligned_cols=108 Identities=18% Similarity=0.190 Sum_probs=80.3
Q ss_pred CCHHHHH-HhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHH
Q 015709 174 GGLSVLV-GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252 (402)
Q Consensus 174 Ggl~~Li-~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~ 252 (402)
+.+..|| ..+.++++.||..|..|+|-++-=+.+.-.. .++.+.+.++.++..++..|+.+|.-++.-|.. .
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~--~ 98 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGI--D 98 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCc--h
Confidence 4566665 7889999999999999999999766543332 368888888777889999999999987776543 2
Q ss_pred HHHh----------cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 253 MFYV----------EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 253 ~f~~----------~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.|-. ..-..++...+.+. +..+|.-|+-.++-|.-.
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSE--NPELQAIAVEGLCKLLLS 144 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhc
Confidence 2222 23456677777775 567899999999988753
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.97 E-value=3.5 Score=45.30 Aligned_cols=131 Identities=20% Similarity=0.196 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
-+|..+.-+-.+-.-.++.|.-++|+. |-+..|+....+++..||...+.+|+.+.-+|...-+.+. .+...+|+.-+
T Consensus 58 i~dRIl~fla~fv~sl~q~d~e~DlV~-~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl 135 (892)
T KOG2025|consen 58 IPDRILSFLARFVESLPQLDKEEDLVA-GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRL 135 (892)
T ss_pred cHHHHHHHHHHHHHhhhccCchhhHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHH
Confidence 344444555566666678888888774 5677888888999999999999999999976665444443 45677777777
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV 284 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL 284 (402)
.+..+.||..|+.|||-+-.. +. -. +......+..+++.+. ++.+|+-|+..|
T Consensus 136 ~Drep~VRiqAv~aLsrlQ~d-~~-de---e~~v~n~l~~liqnDp-S~EVRRaaLsnI 188 (892)
T KOG2025|consen 136 KDREPNVRIQAVLALSRLQGD-PK-DE---ECPVVNLLKDLIQNDP-SDEVRRAALSNI 188 (892)
T ss_pred hccCchHHHHHHHHHHHHhcC-CC-CC---cccHHHHHHHHHhcCC-cHHHHHHHHHhh
Confidence 777889999999999987522 11 11 2345667777777653 456777665443
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.55 Score=51.50 Aligned_cols=143 Identities=19% Similarity=0.168 Sum_probs=113.5
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH
Q 015709 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (402)
Q Consensus 174 Ggl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~ 253 (402)
+.++.++.+....+-+++...---+.+-++.+|.-+. +++..+++=..+.++.+|..|+...+++ |- +....
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~-----~avnt~~kD~~d~np~iR~lAlrtm~~l-~v-~~i~e- 120 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI-----LAVNTFLKDCEDPNPLIRALALRTMGCL-RV-DKITE- 120 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH-----hhhhhhhccCCCCCHHHHHHHhhceeeE-ee-hHHHH-
Confidence 3578889999888899999999999999999996443 5677788877788889999999998876 32 22122
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHH
Q 015709 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 333 (402)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~ 333 (402)
.-..+|..+++++ ++.+|+.|+..+..+-. ...+...+.|++..|-+++...++.+.-.|+.+|..
T Consensus 121 ----y~~~Pl~~~l~d~--~~yvRktaa~~vakl~~--------~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~e 186 (734)
T KOG1061|consen 121 ----YLCDPLLKCLKDD--DPYVRKTAAVCVAKLFD--------IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSE 186 (734)
T ss_pred ----HHHHHHHHhccCC--ChhHHHHHHHHHHHhhc--------CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHH
Confidence 2457889999986 56688888888887742 234456789999999999998899999999999999
Q ss_pred HhcCC
Q 015709 334 LLQLR 338 (402)
Q Consensus 334 L~~~~ 338 (402)
+....
T Consensus 187 I~e~~ 191 (734)
T KOG1061|consen 187 IHESH 191 (734)
T ss_pred HHHhC
Confidence 88764
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=93.89 E-value=6.1 Score=40.88 Aligned_cols=192 Identities=19% Similarity=0.230 Sum_probs=114.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHH----HHH-HH
Q 015709 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISA----WIL-GK 200 (402)
Q Consensus 127 ~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa----~vL-g~ 200 (402)
|+..+++...+....+... +..+..+++.+.-++........+.. -+..+..-+ ....+..+..+. |+. |-
T Consensus 185 ~~~~~ll~~l~~~~~~~~~-~~~~~~~~~~la~LvNK~~~~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL 261 (415)
T PF12460_consen 185 PDLEELLQSLLNLALSSED-EFSRLAALQLLASLVNKWPDDDDLDE--FLDSLLQSISSSEDSELRPQALEILIWITKAL 261 (415)
T ss_pred cCHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCCChhhHHH--HHHHHHhhhcccCCcchhHHHHHHHHHHHHHH
Confidence 4445667777777665543 56677777777777765433222211 122222222 223333444443 333 44
Q ss_pred HhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh--------cHHHHHh----cCcHHHHHHhhc
Q 015709 201 ASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA--------GQEMFYV----EAGDLMLQDILG 268 (402)
Q Consensus 201 ~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~--------~~~~f~~----~gGi~~L~~lL~ 268 (402)
+..++|...+ .+..|+.++.+ +++...|.-+++-++.+.+. ..+.+++ .--++.|++..+
T Consensus 262 v~R~~~~~~~------~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~ 333 (415)
T PF12460_consen 262 VMRGHPLATE------LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFK 333 (415)
T ss_pred HHcCCchHHH------HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHh
Confidence 5566665544 46789999987 45556666666666665332 2222222 234566666666
Q ss_pred CCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh--CCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 269 NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD--RFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 269 s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~--~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
..+ ...|..-..++++++.+ -| .+.+.. ..++|.|++.|..+|.+++..++.+|..++...
T Consensus 334 ~~~--~~~k~~yL~ALs~ll~~-----vP--~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 334 EAD--DEIKSNYLTALSHLLKN-----VP--KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hcC--hhhHHHHHHHHHHHHhh-----CC--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 542 23677788888898853 12 112221 458899999999999999999999999999865
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.25 Score=47.52 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=42.2
Q ss_pred HHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhH-HHHHHcCcHHHHHHhhcCCC
Q 015709 177 SVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQ-KQVLELGALSKLMKMVKSSF 229 (402)
Q Consensus 177 ~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q-~~~le~g~L~~Ll~LL~s~~ 229 (402)
..|+++| ...++-.|+.|.-+|.++++.....- ....+.+.|..|+..+.+..
T Consensus 175 ~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 175 HTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 3456666 45789999999999999999876654 55568899999999997644
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=93.86 E-value=1.1 Score=41.41 Aligned_cols=146 Identities=14% Similarity=0.083 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHhcC-ChHhH----HHHH------HcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015709 189 DIRKISAWILGKASQN-NPLVQ----KQVL------ELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (402)
Q Consensus 189 ~Ir~~Aa~vLg~~aqN-Np~~Q----~~~l------e~g~L~~Ll~-LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 256 (402)
.||..|..+|..++++ .++.= -.++ ..+.-+.|+. ++.+.++.+|..|+.+++.|+.+..+.....-+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3799999999999998 43211 0011 1123344444 445556889999999999999986553332222
Q ss_pred cC-------------------cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhc
Q 015709 257 EA-------------------GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA 317 (402)
Q Consensus 257 ~g-------------------Gi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~ 317 (402)
.. -...|...|+.++ +..+....+.++..|+..- ........+. ..++..+..++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~t---PY~rL~~~ll-~~~v~~v~~~l~ 155 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQAT---PYHRLPPGLL-TEVVTQVRPLLR 155 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHccC---ChhhcCHhHH-HHHHHHHHHHHh
Confidence 22 1245556666553 3446667777777777531 1111222121 123444455677
Q ss_pred CCChHHHHHHHHHHHHHhcCCh
Q 015709 318 SADLDLQEKALAAIKNLLQLRT 339 (402)
Q Consensus 318 ~~d~dv~E~aL~aL~~L~~~~~ 339 (402)
+.|++++..++.++..+++..+
T Consensus 156 ~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 156 HRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred cCCCcHHHHHHHHHHHHHcCCC
Confidence 8899999999999999987643
|
|
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=93.81 E-value=1 Score=39.15 Aligned_cols=74 Identities=16% Similarity=0.083 Sum_probs=60.2
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH-hHHHHHHcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhcCCh
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNNL 248 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~-~Q~~~le~g~L~~Ll~LL~s~---~~~vr~kAl~ALS~LiR~~~ 248 (402)
++..|-.-|+++++.++..|..+|-.++.|... .+..+.....+..|++++... ++.++.|++..|-+-...++
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 345566677889999999999999999999865 888888878888899999863 46789998888877665544
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.69 E-value=2.6 Score=45.11 Aligned_cols=138 Identities=16% Similarity=0.167 Sum_probs=96.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~ 255 (402)
+..+..+|.++..+-|..+..-|..+-.+.| .|-.+.....++.|++-|++.++++..+++.-+++++.+... .
T Consensus 338 i~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p-~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~-~---- 411 (675)
T KOG0212|consen 338 IEVLTKYLSDDREETRIAVLNWIILLYHKAP-GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS-P---- 411 (675)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHhhCc-chhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc-c----
Confidence 5667788999999999999999999887666 677777778999999999999999999999999999987432 1
Q ss_pred hcCcHHHHHHhhc---CCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcC-CChHHHHHHHHHH
Q 015709 256 VEAGDLMLQDILG---NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAI 331 (402)
Q Consensus 256 ~~gGi~~L~~lL~---s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~d~dv~E~aL~aL 331 (402)
|-.+.+..+|. .+ ..-+..++.+.+..||.- .++ +.+-..+..+|.. +|.++-.....+|
T Consensus 412 --~~~~fl~sLL~~f~e~--~~~l~~Rg~lIIRqlC~l----L~a--------E~IYr~~a~ILe~e~nl~FAstMV~~L 475 (675)
T KOG0212|consen 412 --NLRKFLLSLLEMFKED--TKLLEVRGNLIIRQLCLL----LNA--------ERIYRSIADILEREENLKFASTMVQAL 475 (675)
T ss_pred --cHHHHHHHHHHHHhhh--hHHHHhhhhHHHHHHHHH----hCH--------HHHHHHHHHHHhccccchHHHHHHHHH
Confidence 22444455543 33 344788999999999852 121 2233344444433 3555555555555
Q ss_pred HHHh
Q 015709 332 KNLL 335 (402)
Q Consensus 332 ~~L~ 335 (402)
...+
T Consensus 476 n~iL 479 (675)
T KOG0212|consen 476 NTIL 479 (675)
T ss_pred Hhhh
Confidence 5433
|
|
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.82 Score=40.43 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=58.9
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN 247 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s------~~~~vr~kAl~ALS~LiR~~ 247 (402)
++..|..-|+++++.++..|..+|-++++|. +.++..|...+.+..|+++++. .+..|+.+.+.-|-.-...+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4556777788999999999999999999997 5688889999999999999963 34678888877666544433
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.67 E-value=6.8 Score=39.28 Aligned_cols=236 Identities=17% Similarity=0.154 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHh
Q 015709 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV 208 (402)
Q Consensus 129 d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~ 208 (402)
+...||..++.+..... -..|...|-++.++-.-++.+... .+..++..+..+...+-...|.++.|+++....+
T Consensus 42 ~~~~lk~l~qL~~~~~~----~~~a~~alVnlsq~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~ 116 (353)
T KOG2973|consen 42 SEALLKDLTQLLKDLDP----AEPAATALVNLSQKEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEV 116 (353)
T ss_pred hhhhHHHHHHHccCccc----ccHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHH
Confidence 45566666666665432 223334444455555566666666 5666677777776667778899999999877666
Q ss_pred HHHHHHc-----CcHHHHHHhhcCCCHHH---HHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHH-
Q 015709 209 QKQVLEL-----GALSKLMKMVKSSFVEE---AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK- 279 (402)
Q Consensus 209 Q~~~le~-----g~L~~Ll~LL~s~~~~v---r~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~k- 279 (402)
....... .++..|+.-+...+-.. -.-...-++++.+ ++.++..|.... .-+...++.=+..+..+|+.
T Consensus 117 ~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~-~~~gR~l~~~~k-~~p~~kll~ft~~~s~vRr~G 194 (353)
T KOG2973|consen 117 AALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ-FEAGRKLLLEPK-RFPDQKLLPFTSEDSQVRRGG 194 (353)
T ss_pred HHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh-hhhhhhHhcchh-hhhHhhhhcccccchhhhccc
Confidence 5555433 35566665554433221 1122333444443 455666665444 22222222211113334443
Q ss_pred HHHHHHHHhhcc-----cccCCCCcch----------hHHh---CCcHHHHHHhhc-----CCChHHHHHHHHHHHHHhc
Q 015709 280 AVSLVGDLAKCQ-----LENMHKVEPP----------LFRD---RFFLKSVVDLTA-----SADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 280 A~~lL~~L~~~~-----l~~~~~~~~~----------~l~~---~g~v~~Lv~lL~-----~~d~dv~E~aL~aL~~L~~ 336 (402)
.+..|.|.|+.. +-.......+ .+.+ .++...| +.|. .+|++++.+-+.||..|+.
T Consensus 195 vagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLca 273 (353)
T KOG2973|consen 195 VAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCA 273 (353)
T ss_pred hHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHh
Confidence 445556655431 0000000000 1111 1222222 4443 3489999999999998887
Q ss_pred CChhhHHHHHhcCCcHHHHHHHHHHhHHhhhhhhHhhhHHHH
Q 015709 337 LRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDV 378 (402)
Q Consensus 337 ~~~~~~~~~~~~~GL~~~L~~L~~~~~~l~~~e~~~~y~~~l 378 (402)
.. .-|+.++ ..|..+.+..|+..- +++|-++-|+-+
T Consensus 274 T~-~GRe~lR-~kgvYpilRElhk~e----~ded~~~ace~v 309 (353)
T KOG2973|consen 274 TR-AGREVLR-SKGVYPILRELHKWE----EDEDIREACEQV 309 (353)
T ss_pred hh-HhHHHHH-hcCchHHHHHHhcCC----CcHHHHHHHHHH
Confidence 54 4678888 777777776663322 455556655543
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.63 E-value=7.5 Score=43.30 Aligned_cols=180 Identities=17% Similarity=0.102 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCH---------------HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGGL---------------SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGgl---------------~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~ 212 (402)
.-++-|...|..++-+-||--..+.+.++ ..++.||+++++.||..|...+-.++..+- ++
T Consensus 309 ~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N-v~--- 384 (866)
T KOG1062|consen 309 GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESN-VR--- 384 (866)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc-HH---
Confidence 34555666666666555544333333333 356789999999999999999988884221 22
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh--------c------CcHHHHHHhhcCC--------
Q 015709 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV--------E------AGDLMLQDILGNS-------- 270 (402)
Q Consensus 213 le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~--------~------gGi~~L~~lL~s~-------- 270 (402)
..+..|+..|.+.++..+....+-|.-++..|.|....|++ + ..+.-++.++.+.
T Consensus 385 ---~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~ 461 (866)
T KOG1062|consen 385 ---VMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYA 461 (866)
T ss_pred ---HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHH
Confidence 23567888888877788888888888777777665444321 1 1333344443322
Q ss_pred ---------------CccHHHHHHHHHHHHH---HhhcccccCCCCcchhHHhCCcHHHHHHhhcCC--ChHHHHHHHHH
Q 015709 271 ---------------SFEIRLHRKAVSLVGD---LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAA 330 (402)
Q Consensus 271 ---------------~~d~klq~kA~~lL~~---L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~a 330 (402)
-..+.+..-|.|+|.- |... ..+........+..++..+.+++.+. +..++-.++.|
T Consensus 462 ~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~---~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~A 538 (866)
T KOG1062|consen 462 VLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLD---GANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTA 538 (866)
T ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhc---CccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 1123345556666652 2211 11122222334556777777777654 56677777777
Q ss_pred HHHHhcC
Q 015709 331 IKNLLQL 337 (402)
Q Consensus 331 L~~L~~~ 337 (402)
|..|...
T Consensus 539 l~KLSsr 545 (866)
T KOG1062|consen 539 LLKLSSR 545 (866)
T ss_pred HHHHHhh
Confidence 7777543
|
|
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.94 Score=40.10 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=60.4
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCC
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNN 247 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s-~~~~vr~kAl~ALS~LiR~~ 247 (402)
++..|..-|++.++.++..|..+|-.+++|. +..+..+...+.+..|+++++. .++.|+.|++..|-+-...+
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 4556667788899999999999999999995 6688888899999999999985 34678888888877765443
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.33 E-value=12 Score=39.25 Aligned_cols=196 Identities=16% Similarity=0.109 Sum_probs=132.2
Q ss_pred HHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-----C----hHhHHHHHHcCcHHH
Q 015709 150 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN-----N----PLVQKQVLELGALSK 220 (402)
Q Consensus 150 k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN-----N----p~~Q~~~le~g~L~~ 220 (402)
....++.+--+....|---.|++++|++.|+.+|.|.|.+|-......+-.++-- + ...-++.++.++++.
T Consensus 101 Lhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 101 LHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 4456677777778888888999999999999999999999999988888877632 1 134456777899999
Q ss_pred HHHhhcCCCHHH------HHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC-CccHHHHHHHHHHHHHHhhcccc
Q 015709 221 LMKMVKSSFVEE------AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-SFEIRLHRKAVSLVGDLAKCQLE 293 (402)
Q Consensus 221 Ll~LL~s~~~~v------r~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~-~~d~klq~kA~~lL~~L~~~~l~ 293 (402)
|++.+.-=+.++ ...++.-+-|++.-.+......++.|-+.-|..-+... ..+ .-+.-|.-.++-+...
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~-aNk~YasEiLaillq~--- 256 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFD-ANKQYASEILAILLQN--- 256 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcc-hhHHHHHHHHHHHhcc---
Confidence 999887433222 23455566677765666667777777666655533322 222 2455666666655532
Q ss_pred cCCCCcchhHHhCCcHHHHHHhhcC---------CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcH
Q 015709 294 NMHKVEPPLFRDRFFLKSVVDLTAS---------ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD 352 (402)
Q Consensus 294 ~~~~~~~~~l~~~g~v~~Lv~lL~~---------~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~ 352 (402)
+ .+.+..+..-..+..++.-+.. +...+.|..-.+|++++..+. .+..|-..-|+.
T Consensus 257 -s-~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~-nr~~Fl~~EGlq 321 (536)
T KOG2734|consen 257 -S-DENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA-NRERFLKGEGLQ 321 (536)
T ss_pred -C-chhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh-hhhhhhccccHH
Confidence 2 2355556666677777665531 134678889999999988764 566676555643
|
|
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=93.30 E-value=1.2 Score=38.85 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=58.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCC
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNN 247 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s~~--~~vr~kAl~ALS~LiR~~ 247 (402)
+..|..-|++++|.++..|..++-.+++|. +.++..+...+.+..|..++++.. +.|+.|++..+.+-...+
T Consensus 39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 344666778999999999999999999995 668888888899999999998765 338888888887765543
|
Unpublished observations. Domain of unknown function. |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.98 Score=37.39 Aligned_cols=93 Identities=13% Similarity=0.004 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015709 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (402)
Q Consensus 191 r~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (402)
|..+...|+.++...++.-...++ -.+|+++..+.+.+..+|..|+.||.++++......-. .-...+..|..++.++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCC
Confidence 455666677666655544333332 47899999999999999999999999998875442221 1246788888888876
Q ss_pred CccHHHHHHHHHHHHHHh
Q 015709 271 SFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 271 ~~d~klq~kA~~lL~~L~ 288 (402)
++.+|. ++.++-.|.
T Consensus 81 --d~~Vr~-~a~~Ld~ll 95 (97)
T PF12755_consen 81 --DENVRS-AAELLDRLL 95 (97)
T ss_pred --chhHHH-HHHHHHHHh
Confidence 565654 556665554
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.36 Score=43.68 Aligned_cols=91 Identities=23% Similarity=0.291 Sum_probs=68.0
Q ss_pred HHHHHHHcc--CCCCchhHHHhcCCHHHHHHhcCC---------CCHHHHHHHHHHHHHHhcCChHhHHHHHH-cCcHHH
Q 015709 153 ALQELLILV--EPIDNANDLSKLGGLSVLVGQLNH---------PDTDIRKISAWILGKASQNNPLVQKQVLE-LGALSK 220 (402)
Q Consensus 153 AL~~L~~Lv--e~iDnA~~l~~lGgl~~Li~lL~s---------~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le-~g~L~~ 220 (402)
.|..|+-.+ .+++....|+..||+..|+.+|.. .+..+...+..|+-++. |++.-.+.++. .+++..
T Consensus 84 ~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~-n~~~G~~~v~~~~~~v~~ 162 (187)
T PF06371_consen 84 ILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM-NTKYGLEAVLSHPDSVNL 162 (187)
T ss_dssp HHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT-SSHHHHHHHHCSSSHHHH
T ss_pred HHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH-ccHHHHHHHHcCcHHHHH
Confidence 344444433 456788999999999999988752 34578899999998888 56665666665 589999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHh
Q 015709 221 LMKMVKSSFVEEAVKALYTVSSLI 244 (402)
Q Consensus 221 Ll~LL~s~~~~vr~kAl~ALS~Li 244 (402)
|+..|.+.+..+|.-|+.-|+.+|
T Consensus 163 i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 163 IALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHH
Confidence 999999988999999988888775
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.77 Score=40.29 Aligned_cols=72 Identities=19% Similarity=0.239 Sum_probs=57.9
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCCC-HH---HHHHHHHHHHHHhcC
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSF-VE---EAVKALYTVSSLIRN 246 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s~~-~~---vr~kAl~ALS~LiR~ 246 (402)
++..|-.-|.+++|.++..|..++-.+++|. +..+..+.....+..|.+++.+.. .. |+.+++--|..-...
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 3455677788999999999999999999997 678888888889999999988654 33 788887766654433
|
Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A .... |
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=92.66 E-value=1.1 Score=39.74 Aligned_cols=74 Identities=16% Similarity=0.159 Sum_probs=60.9
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCh
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNL 248 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp-~~Q~~~le~g~L~~Ll~LL~s-~~~~vr~kAl~ALS~LiR~~~ 248 (402)
++..|..=|.+.++.++..|..+|-++++|.. ..+..|.....+..|+++++. .+..|+.+.+.-|-.....++
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 34556666788999999999999999999976 488888888999999999998 567889988888877655543
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.50 E-value=5.3 Score=46.10 Aligned_cols=209 Identities=16% Similarity=0.135 Sum_probs=121.1
Q ss_pred HHhHHHHHHHHHHcCCCCHH----HHHHHHHHHhhcCC--CCHHHHHHHHHHHHHccCCCCch-hHHHhcCCHHHHHHhc
Q 015709 111 KKRQMEIKELMEKLKTPSDA----QLIQIAIDDLNNST--LSLEDSQRALQELLILVEPIDNA-NDLSKLGGLSVLVGQL 183 (402)
Q Consensus 111 ~~r~~~L~ea~~~l~~~~d~----~lMk~al~~L~~~~--~t~e~k~~AL~~L~~Lve~iDnA-~~l~~lGgl~~Li~lL 183 (402)
+|+++.|.+++.. |+-. +.+..+.+.+.++- .+.-.+...+..|..+++-.++= .+|+. ..++-+|=++
T Consensus 672 kK~yrlL~~l~~~---~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k~I~EvIL~~ 747 (1176)
T KOG1248|consen 672 KKAYRLLEELSSS---PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-KLIPEVILSL 747 (1176)
T ss_pred HHHHHHHHHHhcC---CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHhc
Confidence 3578888888864 3322 22222223222211 12235666677777777655511 12222 2344444444
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC------cHHHHHHhhcCC----CHHHHHHHHHHHHHHhcCChhcHHH
Q 015709 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELG------ALSKLMKMVKSS----FVEEAVKALYTVSSLIRNNLAGQEM 253 (402)
Q Consensus 184 ~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g------~L~~Ll~LL~s~----~~~vr~kAl~ALS~LiR~~~~~~~~ 253 (402)
+..+..-|..|..||-.++. -+.+.+.| .|...+.+++.. ++-++...+.|++.+...+......
T Consensus 748 Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~ 822 (1176)
T KOG1248|consen 748 KEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDD 822 (1176)
T ss_pred ccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccH
Confidence 78889999999999988882 11122222 455555555543 3333444488999988776654444
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHH
Q 015709 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 333 (402)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~ 333 (402)
-.-.+-++.+...|.+. ...++.-|+.++.-++.. .|...-.....-+++.+..++......++-++-..|..
T Consensus 823 ~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv~~-----~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek 895 (1176)
T KOG1248|consen 823 ETLEKLISMVCLYLASN--SREIAKAAIGFIKVLVYK-----FPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK 895 (1176)
T ss_pred HHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHc-----CCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44456677777778776 567888899999888752 33322222223367777777666667777777766666
Q ss_pred Hh
Q 015709 334 LL 335 (402)
Q Consensus 334 L~ 335 (402)
|.
T Consensus 896 Li 897 (1176)
T KOG1248|consen 896 LI 897 (1176)
T ss_pred HH
Confidence 54
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.44 E-value=2.2 Score=42.97 Aligned_cols=169 Identities=15% Similarity=0.151 Sum_probs=102.0
Q ss_pred CCCchhHHHhc-CCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChH-hHHHHHHcCcHHHHHHhhcCCC---HHHHH--
Q 015709 163 PIDNANDLSKL-GGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKSSF---VEEAV-- 234 (402)
Q Consensus 163 ~iDnA~~l~~l-Ggl~~Li~lL~s-~~~~Ir~~Aa~vLg~~aqNNp~-~Q~~~le~g~L~~Ll~LL~s~~---~~vr~-- 234 (402)
+...|.++.++ ..+..|+++.+. ....|-...+.++.+++...|+ .-...+-.|-+.+-++.|.... ++++.
T Consensus 223 ~~~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di 302 (432)
T COG5231 223 SKECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDI 302 (432)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHH
Confidence 44455555554 345556666654 3466777788888888864432 1222222344455566665421 22211
Q ss_pred -----------HHHHHH--------HHHhcCChh---------cHHHHHhc--CcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015709 235 -----------KALYTV--------SSLIRNNLA---------GQEMFYVE--AGDLMLQDILGNSSFEIRLHRKAVSLV 284 (402)
Q Consensus 235 -----------kAl~AL--------S~LiR~~~~---------~~~~f~~~--gGi~~L~~lL~s~~~d~klq~kA~~lL 284 (402)
|-+... |.+..-+|+ +.+.|.+- ..+..|.+++++...+.-+ .-|+.=|
T Consensus 303 ~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i-~vAc~Di 381 (432)
T COG5231 303 ERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWI-CVACSDI 381 (432)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceE-eeeHhhH
Confidence 111111 111111222 56666653 4678888888876444322 3356666
Q ss_pred HHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 285 GDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 285 ~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
..+.+ ..|+.+..+...|+=..+.++++++|++++=.|+.|+..+.+.
T Consensus 382 ~~~Vr-----~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 382 FQLVR-----ASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHHHH-----hCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 66664 3688899999999999999999999999999999999988753
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=92.39 E-value=1.1 Score=47.09 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=88.4
Q ss_pred HHHHhcCChhcHHHHHhcCcHHHHHHhh--------cCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHH
Q 015709 240 VSSLIRNNLAGQEMFYVEAGDLMLQDIL--------GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS 311 (402)
Q Consensus 240 LS~LiR~~~~~~~~f~~~gGi~~L~~lL--------~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~ 311 (402)
|=-+.|+ +.+.+.++...|+..|...- .....+..+.+.|+.+|+|++.. ++..+..+.+.|+.+.
T Consensus 5 LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~-----s~~aR~~~~~~~~~~~ 78 (446)
T PF10165_consen 5 LRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFL-----SPSARQIFVDLGLAEK 78 (446)
T ss_pred HHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhC-----CHHHHHHHHHcCcHHH
Confidence 3334453 44555566666666666654 11224678999999999999974 6788899999999999
Q ss_pred HHHhhcCC-----ChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCcHHHHHHHHHHhHHhhh
Q 015709 312 VVDLTASA-----DLDLQEKALAAIKNLLQLRTTEALVLKDF-CGLDTALERLRQQLQEVML 367 (402)
Q Consensus 312 Lv~lL~~~-----d~dv~E~aL~aL~~L~~~~~~~~~~~~~~-~GL~~~L~~L~~~~~~l~~ 367 (402)
+++.|+.. +.++.=-.++.|.-+.....+.+..+.+. +|++.....|..++.....
T Consensus 79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~ 140 (446)
T PF10165_consen 79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSK 140 (446)
T ss_pred HHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 99999876 67888888888887777666677666555 6677777778777776543
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.37 E-value=3.3 Score=46.62 Aligned_cols=171 Identities=15% Similarity=0.207 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHh--cCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015709 148 EDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~--lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~L 224 (402)
.+|..|++.+-..+++-- ....+ .|-+-.++... ...|..+...|+.+|.-++......=..+ -.+.+|.|++-
T Consensus 268 K~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~-~~~v~p~lld~ 344 (815)
T KOG1820|consen 268 KDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY-AKNVFPSLLDR 344 (815)
T ss_pred HHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH-HHhhcchHHHH
Confidence 578888888877766433 11111 23344445443 66889999999999999998766542222 23678999998
Q ss_pred hcCCCHHHH---HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcch
Q 015709 225 VKSSFVEEA---VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 301 (402)
Q Consensus 225 L~s~~~~vr---~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~ 301 (402)
+......++ .+++-++++.+ +. ..-.+.+...++++ +++++..+..++...... .++....
T Consensus 345 lkekk~~l~d~l~~~~d~~~ns~---~l-------~~~~~~I~e~lk~k--np~~k~~~~~~l~r~~~~----~~~~~~~ 408 (815)
T KOG1820|consen 345 LKEKKSELRDALLKALDAILNST---PL-------SKMSEAILEALKGK--NPQIKGECLLLLDRKLRK----LGPKTVE 408 (815)
T ss_pred hhhccHHHHHHHHHHHHHHHhcc---cH-------HHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHhh----cCCcCcc
Confidence 887665554 56666666622 11 12345667778876 677888877776665542 2333333
Q ss_pred hHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 302 LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 302 ~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
.-.-.++++.++.+.+..+.++|..++.++..+...
T Consensus 409 ~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 334467888888888888999999999999988754
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.14 E-value=3 Score=45.76 Aligned_cols=89 Identities=12% Similarity=0.216 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhcCChhcH------------------HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhccc
Q 015709 231 EEAVKALYTVSSLIRNNLAGQ------------------EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 292 (402)
Q Consensus 231 ~vr~kAl~ALS~LiR~~~~~~------------------~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l 292 (402)
+.-.+|+-+|+.++.+.+.+. +++..+ .+.++..|+.. .|+.+|+||+-+|+.+|.
T Consensus 325 ~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkte-rDvSirrravDLLY~mcD--- 398 (938)
T KOG1077|consen 325 ELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTE-RDVSIRRRAVDLLYAMCD--- 398 (938)
T ss_pred HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccc-cchHHHHHHHHHHHHHhc---
Confidence 344566666666666555433 233233 56777888855 378899999999999994
Q ss_pred ccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 293 ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 293 ~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
.+....+ |..+.+-|.+-|..+||....=+.-|
T Consensus 399 ----~~Nak~I-----V~elLqYL~tAd~sireeivlKvAIL 431 (938)
T KOG1077|consen 399 ----VSNAKQI-----VAELLQYLETADYSIREEIVLKVAIL 431 (938)
T ss_pred ----hhhHHHH-----HHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 2333332 33344444555666665554433333
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.89 E-value=2.6 Score=45.20 Aligned_cols=141 Identities=17% Similarity=0.143 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCH-HHHHHHHHHHHHHhcC--ChHhHHHHHHcC-cHHHH
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT-DIRKISAWILGKASQN--NPLVQKQVLELG-ALSKL 221 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~-~Ir~~Aa~vLg~~aqN--Np~~Q~~~le~g-~L~~L 221 (402)
.++-+..|+-=+.++|.-.-+.--..-.|-+..++.++.++.+ .++..|..+-+.+..- .+...+. ++.| .+..|
T Consensus 263 ~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl 341 (675)
T KOG0212|consen 263 EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVL 341 (675)
T ss_pred cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHH
Confidence 3456677888888877755555555556778888888877666 5888777765443321 1222211 3333 47788
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 222 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 222 l~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.+.++++..+.|..++-=|.-+-+.+|. +-..........|..-|.+++ .-+..+++++++++|..
T Consensus 342 ~~~l~~~~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~s--d~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 342 TKYLSDDREETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSDRS--DEVVLLALSLLASICSS 407 (675)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcCch--hHHHHHHHHHHHHHhcC
Confidence 8899988899999999999988776654 444445678888888888763 34788999999999964
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.82 E-value=4.6 Score=43.26 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCC----CHHHHHHHHHHHHHHh
Q 015709 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP----DTDIRKISAWILGKAS 202 (402)
Q Consensus 127 ~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~----~~~Ir~~Aa~vLg~~a 202 (402)
.++....+++++++.++. ...+..|+..|..+.-+...|..|.++.|+..|.+++.+. +.++..........+-
T Consensus 79 ~sp~~~a~~i~e~l~~~~--~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elm 156 (713)
T KOG2999|consen 79 ASPSHYAKRIMEILTEGN--NISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELM 156 (713)
T ss_pred cCchHHHHHHHHHHhCCC--cHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence 355678899999998874 4667779999999999999999999999999999999764 3456655555554443
Q ss_pred cCChHhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 015709 203 QNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA 280 (402)
Q Consensus 203 qNNp~~Q~~~le~g~L~~Ll~LL~s~--~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA 280 (402)
..--.+.+.+ ...++.....+.+-. +..+-..|+.-+-+++-+.+.-.+.+.+.--++-|+..++.. +.+++..|
T Consensus 157 ehgvvsW~~~-~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~--n~~i~~~a 233 (713)
T KOG2999|consen 157 EHGVVSWESV-SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS--NQRIQTCA 233 (713)
T ss_pred hhceeeeeec-ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc--chHHHHHH
Confidence 2211111110 112233344444221 223456777777788887777777777888888888888864 67899999
Q ss_pred HHHHHHHhh
Q 015709 281 VSLVGDLAK 289 (402)
Q Consensus 281 ~~lL~~L~~ 289 (402)
..++..|..
T Consensus 234 ial~nal~~ 242 (713)
T KOG2999|consen 234 IALLNALFR 242 (713)
T ss_pred HHHHHHHHh
Confidence 999999875
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.74 Score=41.31 Aligned_cols=147 Identities=13% Similarity=0.152 Sum_probs=95.9
Q ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH
Q 015709 176 LSVLVGQLN--HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (402)
Q Consensus 176 l~~Li~lL~--s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~ 253 (402)
+..++..|. ...+++|..|.-+++.+- +..++.+.+. .-..+-.++.....+-...++.+++.+.-..|.....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~-~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK-ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH-HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 445666664 478899999999999984 4444444332 2223333443322345788999999998887766555
Q ss_pred HH-hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChH-HHHHHHHH
Q 015709 254 FY-VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLD-LQEKALAA 330 (402)
Q Consensus 254 f~-~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~d-v~E~aL~a 330 (402)
++ ..|-.+.+...+.....+..++..++.+|..=|. +...+..+. ..+++.|-++++.+ |.. ++..|+.+
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~------d~~~r~~I~-~~~~~~L~~~~~~~~~~~~ir~~A~v~ 153 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI------DKSCRTFIS-KNYVSWLKELYKNSKDDSEIRVLAAVG 153 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT------SHHHHHCCH-HHCHHHHHHHTTTCC-HH-CHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc------cHHHHHHHH-HHHHHHHHHHHccccchHHHHHHHHHH
Confidence 54 5677788888888333478899999999987663 444454444 45688999999644 454 67777766
Q ss_pred HHH
Q 015709 331 IKN 333 (402)
Q Consensus 331 L~~ 333 (402)
|..
T Consensus 154 L~K 156 (157)
T PF11701_consen 154 LCK 156 (157)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.67 E-value=15 Score=38.71 Aligned_cols=189 Identities=16% Similarity=0.119 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-ccCCCCchhHHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChH
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLI-LVEPIDNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPL 207 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~-Lve~iDnA~~l~~lGgl~~Li~lL~s-~~~~Ir~~Aa~vLg~~aqNNp~ 207 (402)
..+++..+.-+.+.+ ..+.+..|+.+|.. ++++--.-.+=+....+..++..|.. .++.++..|.++|+.++.|-|.
T Consensus 285 ~~~v~~~l~~~~g~e-~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 285 SALVADLLKEISGSE-RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hHHHHHHHHhccCcc-chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 467888888888774 45778888887765 44553333331122234566777754 8899999999999999987553
Q ss_pred hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015709 208 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (402)
Q Consensus 208 ~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L 287 (402)
--..-.+ =++.++++--.+..+++-.-|.-+.+.++..+.|-+. +..+..++.+. |...-.-++..++-|
T Consensus 364 ~l~DstE-~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~--D~~~~~~~iKm~Tkl 433 (516)
T KOG2956|consen 364 RLFDSTE-IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTA--DEPRAVAVIKMLTKL 433 (516)
T ss_pred hhhchHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcC--cchHHHHHHHHHHHH
Confidence 2211111 2567777777776666655555554444433333222 22344444442 222333344455555
Q ss_pred hhcccccCCCCcchhHH--hCCcHHHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 288 AKCQLENMHKVEPPLFR--DRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~l~--~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
+.. -..+.+. =..+.|.+++--.+....+|..|.-+|..+..
T Consensus 434 ~e~-------l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 434 FER-------LSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred Hhh-------cCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 531 1112221 14677888888888899999999998888864
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=91.54 E-value=2.2 Score=41.65 Aligned_cols=158 Identities=16% Similarity=0.109 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhhcC---CCCH---HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCC-----CHHHHHHHHHH
Q 015709 129 DAQLIQIAIDDLNNS---TLSL---EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP-----DTDIRKISAWI 197 (402)
Q Consensus 129 d~~lMk~al~~L~~~---~~t~---e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~-----~~~Ir~~Aa~v 197 (402)
-+.+.++.+.+...- ..+. ..-..||.-|.-...+.|....|.+..-.--|..+|+.. .+-+|-.+..|
T Consensus 40 i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGV 119 (262)
T PF04078_consen 40 IAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGV 119 (262)
T ss_dssp HHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHH
Confidence 346677777766432 2233 234577777777778899999999998777777777542 47799999999
Q ss_pred HHHHhcC-ChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc-------HHHHHh-cCcHHHHHHhhc
Q 015709 198 LGKASQN-NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-------QEMFYV-EAGDLMLQDILG 268 (402)
Q Consensus 198 Lg~~aqN-Np~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~-------~~~f~~-~gGi~~L~~lL~ 268 (402)
||.++++ ++++-..+++...+|..++.+..++.-.+.-|.+-+.-++-+. .+ .+.|.. ...+..++.-+.
T Consensus 120 IgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd-~GL~yiC~t~eRf~av~~vL~~mV~~l~ 198 (262)
T PF04078_consen 120 IGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDD-VGLNYICQTAERFFAVAMVLNKMVEQLV 198 (262)
T ss_dssp HHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcch-hHHHHHhcCHHHHHHHHHHHHHHHHHHc
Confidence 9999984 5678888889999999999999887777888999888877653 22 233432 233344443333
Q ss_pred CCCccHHHHHHHHHHHHHHh
Q 015709 269 NSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 269 s~~~d~klq~kA~~lL~~L~ 288 (402)
.. .++|+-+..+.....|+
T Consensus 199 ~~-pS~RLLKhIIrCYlRLs 217 (262)
T PF04078_consen 199 KQ-PSPRLLKHIIRCYLRLS 217 (262)
T ss_dssp HS---HHHHHHHHHHHHHHT
T ss_pred cC-CChhHHHHHHHHHHHHc
Confidence 22 25677777777766665
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.49 E-value=15 Score=35.91 Aligned_cols=190 Identities=17% Similarity=0.140 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHccCC-CCchhHHHh-cCCHHHHHHhc-------C----CCCHHHHHHHHHHHHHHhcCChHhHHHHHH
Q 015709 148 EDSQRALQELLILVEP-IDNANDLSK-LGGLSVLVGQL-------N----HPDTDIRKISAWILGKASQNNPLVQKQVLE 214 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~-iDnA~~l~~-lGgl~~Li~lL-------~----s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le 214 (402)
+.++.||.+|..--+. .|.|-.+-. .|-...|++-. . ++...-|..-+-+|-.++..+|+.+..|++
T Consensus 39 p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~FL~ 118 (293)
T KOG3036|consen 39 PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASHPDTRRAFLR 118 (293)
T ss_pred chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcCcchHHHHHH
Confidence 5577888888886665 467765444 45555554322 1 123445655555566666678999999999
Q ss_pred cCcHHHHHHhhcCC---C--HHHHHHHHHHHHHHhcCChhcHHHHH-hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015709 215 LGALSKLMKMVKSS---F--VEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 215 ~g~L~~Ll~LL~s~---~--~~vr~kAl~ALS~LiR~~~~~~~~f~-~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~ 288 (402)
...--.|-.+|+.. . +-.|..++.-|++++.+.....-.|. ..+.++..+.++..+ +.-.|.-|.|.+.-+.
T Consensus 119 A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G--SelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 119 AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG--SELSKTVATFILQKIL 196 (293)
T ss_pred ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc--cHHHHHHHHHHHHHHh
Confidence 86433333444432 2 34699999999999999766666664 578999999999886 3446777888887766
Q ss_pred hcccccCCCCcc-------hhHHh-CCcHHHHH-HhhcCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015709 289 KCQLENMHKVEP-------PLFRD-RFFLKSVV-DLTASADLDLQEKALAAIKNLLQLRTTEALVLK 346 (402)
Q Consensus 289 ~~~l~~~~~~~~-------~~l~~-~g~v~~Lv-~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~ 346 (402)
.. ..-. +.|.- .-++..++ ++.+.++..+..+++++...|...+. .|..++
T Consensus 197 ld------D~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr-ar~aL~ 256 (293)
T KOG3036|consen 197 LD------DVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR-ARAALR 256 (293)
T ss_pred hc------cccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH-HHHHHH
Confidence 32 1111 11111 12333333 34556799999999999999987753 555554
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.14 E-value=5.2 Score=43.69 Aligned_cols=141 Identities=18% Similarity=0.147 Sum_probs=83.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhc----CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL----GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 136 al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~l----Ggl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
++.++-+ .+++-+-.|||.|..++-+.-....|++. ..+..++..++ .++..+..+++||.|+..| |..++.
T Consensus 549 ~l~~l~~--wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~ 624 (745)
T KOG0301|consen 549 ALAILLQ--WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGREL 624 (745)
T ss_pred HHHHHhc--CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHH
Confidence 4444433 24567888999999999776655566552 23445555555 5688889999999999976 888888
Q ss_pred HHHcCcHHHHHHhhcC----CCHHHH-HHHHHH--HHH-HhcCChhcHHHHHhcCcHHHHHHhhcC---CCccHHHHHHH
Q 015709 212 VLELGALSKLMKMVKS----SFVEEA-VKALYT--VSS-LIRNNLAGQEMFYVEAGDLMLQDILGN---SSFEIRLHRKA 280 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s----~~~~vr-~kAl~A--LS~-LiR~~~~~~~~f~~~gGi~~L~~lL~s---~~~d~klq~kA 280 (402)
+... +..++.-+.. ++..++ +-|..| .|- ++..+. +.+|.+.|..++.. +..|....-+.
T Consensus 625 ~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~-------~~~~~~~l~~ai~~~~e~~~d~EA~yR~ 695 (745)
T KOG0301|consen 625 FMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE-------QLEGKEVLLSAISTLLEPVDDLEAIYRL 695 (745)
T ss_pred HHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc-------ccchHHHHHHHHHhhcccchhHHHHHHH
Confidence 8765 3333333221 122221 111111 221 222222 25777777776542 22344456677
Q ss_pred HHHHHHHhh
Q 015709 281 VSLVGDLAK 289 (402)
Q Consensus 281 ~~lL~~L~~ 289 (402)
+.+|.+|+.
T Consensus 696 l~AlgtL~t 704 (745)
T KOG0301|consen 696 LVALGTLMT 704 (745)
T ss_pred HHHHHhhcc
Confidence 888888875
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.02 E-value=16 Score=35.59 Aligned_cols=200 Identities=17% Similarity=0.130 Sum_probs=124.1
Q ss_pred ChHHHHHHHhhcCCCccccchhh---ccCCCCHHHHHHhHHHHHHHHHHcCCCCHHHHHHHHHHHhh---cCCCCH---H
Q 015709 78 SIDGMLQWAIGHSDPAKLKETAQ---DVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLN---NSTLSL---E 148 (402)
Q Consensus 78 ~~~gLLkwsi~~sd~~~~~~~~~---~~~~~s~e~l~~r~~~L~ea~~~l~~~~d~~lMk~al~~L~---~~~~t~---e 148 (402)
+-+++-+|.++-+.|++...+-. +.+...++ + =-.++..++. ...+..+.+.+.- -+..++ .
T Consensus 24 ~~dk~~~~i~~l~~~p~rE~aL~ELskkre~~~d-l------A~~lW~s~g~--~~~LLqEivaiYp~l~p~~l~~~qsn 94 (293)
T KOG3036|consen 24 NNDKAYQLILSLVSPPTREMALLELSKKREPFPD-L------APMLWHSFGT--MVALLQEIVAIYPSLSPPTLTPAQSN 94 (293)
T ss_pred cccchhhHHHHhhCCchHHHHHHHHHHhccCCcc-c------cHHHHHhcch--HHHHHHHHHhcccccCCCCCCccccc
Confidence 35568999999777766311100 00111111 0 0134455543 3456666666542 222222 2
Q ss_pred HHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHH
Q 015709 149 DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-----HPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLM 222 (402)
Q Consensus 149 ~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~-----s~~~~Ir~~Aa~vLg~~aqNNp-~~Q~~~le~g~L~~Ll 222 (402)
.-.+||--|+-.+...|....|.+..-=--|-.+|+ .+.+-+|-.|.-|||.+++|.+ ++-...+..+.+|..+
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 346788878778888999999998765444455553 3678899999999999999865 3555566789999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCChh------cHHHHHhcC-cHH-HHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015709 223 KMVKSSFVEEAVKALYTVSSLIRNNLA------GQEMFYVEA-GDL-MLQDILGNSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 223 ~LL~s~~~~vr~kAl~ALS~LiR~~~~------~~~~f~~~g-Gi~-~L~~lL~s~~~d~klq~kA~~lL~~L~ 288 (402)
+.+..+++.-+.-|.+-+.-++-+... ..+.|...+ -+. ++.++.+.+ +.++-..++.+...|+
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p--s~RllKhviRcYlrLs 246 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMP--SPRLLKHVIRCYLRLS 246 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhc
Confidence 999998887788888888877655322 133343222 122 222333333 5677777777777775
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.60 E-value=5.4 Score=42.97 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=101.0
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
-+..++.-+..+.+.+|.....|+....-.-..-+. .-.++.+.+++++.+...+.+|.|++..+++++. ...+
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~ 170 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IESL 170 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhhh
Confidence 456677788889999999999998887743211111 1357888899998778889999999999998854 5677
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHH-HHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhc---CCChHHHHHHHHH
Q 015709 255 YVEAGDLMLQDILGNSSFEIRLHRK-AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA---SADLDLQEKALAA 330 (402)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~d~klq~k-A~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~---~~d~dv~E~aL~a 330 (402)
.+.+-+..|....++.+ ...++. +.++....+.. ..+. .+..+++.+..+|. .....+|+.|..+
T Consensus 171 ~~~~~l~~l~~ai~dk~--~~~~re~~~~a~~~~~~~----Lg~~-----~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a 239 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKK--SALNREAALLAFEAAQGN----LGPP-----FEPYIVPILPSILTNFGDKINKVREAAVEA 239 (569)
T ss_pred hhhhHHHHHHHHhcccc--hhhcHHHHHHHHHHHHHh----cCCC-----CCchHHhhHHHHHHHhhccchhhhHHHHHH
Confidence 78888888999888763 334444 44444444432 2222 34455555555554 4578899988888
Q ss_pred HHHHhcC
Q 015709 331 IKNLLQL 337 (402)
Q Consensus 331 L~~L~~~ 337 (402)
+..+...
T Consensus 240 ~kai~~~ 246 (569)
T KOG1242|consen 240 AKAIMRC 246 (569)
T ss_pred HHHHHHh
Confidence 8887654
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=90.54 E-value=3.1 Score=44.87 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=55.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015709 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (402)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 256 (402)
..++.+....+..||..|..-|..+|.+||+.-..+ ...|++||.++++.....+=.+|.++.+.+|.+.-.
T Consensus 62 ~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~--- 133 (556)
T PF05918_consen 62 NAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLT--- 133 (556)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHH---
T ss_pred HHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHH---
Confidence 344444445568999999999999999988655444 467999999988776766777777777776643211
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015709 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (402)
Q Consensus 257 ~gGi~~L~~lL~s~~~d~klq~kA~~lL~~ 286 (402)
.++.+++.++..+..+|.+++.+|..
T Consensus 134 ----~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 134 ----GLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp ----HHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred ----HHHHHHHhcccCchHHHHHHHHHHHH
Confidence 11233332222355678888766653
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=90.17 E-value=3.3 Score=36.57 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHH
Q 015709 234 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 313 (402)
Q Consensus 234 ~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 313 (402)
-..+-.|+-+++..+.+.. .++..|..-|+++ ++.++..|+.++-.++. +....+...+.+.+++..++
T Consensus 19 w~~ileicD~In~~~~~~k-----~a~rai~krl~~~--n~~v~l~AL~LLe~~vk----NCG~~fh~evas~~Fl~el~ 87 (139)
T cd03567 19 WEAIQAFCEQINKEPEGPQ-----LAVRLLAHKIQSP--QEKEALQALTVLEACMK----NCGERFHSEVGKFRFLNELI 87 (139)
T ss_pred HHHHHHHHHHHHcCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HcCHHHHHHHHhHHHHHHHH
Confidence 3455566666665543322 3566777778876 67899999999998886 35667777888899999999
Q ss_pred HhhcC------CChHHHHHHHHHHHHHh
Q 015709 314 DLTAS------ADLDLQEKALAAIKNLL 335 (402)
Q Consensus 314 ~lL~~------~d~dv~E~aL~aL~~L~ 335 (402)
.++.. .+..|+++++..+..-.
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 88 KLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 99963 47899999998887765
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.16 E-value=12 Score=41.68 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=93.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHH---------------HHHHHHHHHHHccCCCCc-hhHHHhcCCH-HHH
Q 015709 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLE---------------DSQRALQELLILVEPIDN-ANDLSKLGGL-SVL 179 (402)
Q Consensus 117 L~ea~~~l~~~~d~~lMk~al~~L~~~~~t~e---------------~k~~AL~~L~~Lve~iDn-A~~l~~lGgl-~~L 179 (402)
+++.+++=....-.+.||+.+..+-|.+.-+. .....|--.-++|...++ ...++.|=.+ ..+
T Consensus 25 ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~ 104 (948)
T KOG1058|consen 25 IKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAY 104 (948)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHH
Confidence 45666631112234678998888877764321 223344455556666654 4555554221 223
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc
Q 015709 180 VGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 259 (402)
Q Consensus 180 i~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG 259 (402)
-+-|+|||+=||-...+-|.++= .|+.- ...+|.+.+.|.+...-||+.|+.||.++-+++.. .=-.+
T Consensus 105 RkDLQHPNEyiRG~TLRFLckLk--E~ELl-----epl~p~IracleHrhsYVRrNAilaifsIyk~~~~-----L~pDa 172 (948)
T KOG1058|consen 105 RKDLQHPNEYIRGSTLRFLCKLK--EPELL-----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH-----LIPDA 172 (948)
T ss_pred hhhccCchHhhcchhhhhhhhcC--cHHHh-----hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh-----hcCCh
Confidence 35678899999988888888774 33322 24578888889888888999999999988776321 12345
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHH
Q 015709 260 DLMLQDILGNSSFEIRLHRKAVSLV 284 (402)
Q Consensus 260 i~~L~~lL~s~~~d~klq~kA~~lL 284 (402)
-+++-+.|... .|+..+++|.-.|
T Consensus 173 peLi~~fL~~e-~DpsCkRNAFi~L 196 (948)
T KOG1058|consen 173 PELIESFLLTE-QDPSCKRNAFLML 196 (948)
T ss_pred HHHHHHHHHhc-cCchhHHHHHHHH
Confidence 55555655544 2445566654433
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.14 E-value=3.6 Score=47.22 Aligned_cols=141 Identities=10% Similarity=0.013 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHhcCChHhHHHHHH----cCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015709 188 TDIRKISAWILGKASQNNPLVQKQVLE----LGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 262 (402)
Q Consensus 188 ~~Ir~~Aa~vLg~~aqNNp~~Q~~~le----~g~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~ 262 (402)
.+=...+..+|.|+...||.....|-. .|.++.+..++.... +.++.-|+--++-+ ..|.++...+...|.+..
T Consensus 1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~-Tan~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLA-TANKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHH-hcccHHHHHHHhhhHHHH
Confidence 344567899999999999966655532 277888888887654 56777788877755 457888999999999999
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHhcCC
Q 015709 263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 263 L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~ 338 (402)
|..+|.|- +..|..++-.++.|+. ++.......++|.+..+.+++... ++..+-+++..+..|..+.
T Consensus 1818 LL~lLHS~---PS~R~~vL~vLYAL~S------~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1818 LLTLLHSQ---PSMRARVLDVLYALSS------NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHHHHhcC---hHHHHHHHHHHHHHhc------CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence 99999874 5689999999999974 456666777899999998888765 6677888888888887653
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.06 E-value=26 Score=37.18 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=72.4
Q ss_pred hHHHhcCCHHHHHHhc----CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH-HhhcCCCHHHHHHHHHHHHH
Q 015709 168 NDLSKLGGLSVLVGQL----NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM-KMVKSSFVEEAVKALYTVSS 242 (402)
Q Consensus 168 ~~l~~lGgl~~Li~lL----~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll-~LL~s~~~~vr~kAl~ALS~ 242 (402)
+.+-+.|.+.-++..| .+|+..+|..|+++||+.+..-|.--..-. .-.+..++ .|....+.+|.-.|+.+|-.
T Consensus 248 ~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~~~V~leam~~Lt~ 326 (533)
T KOG2032|consen 248 KELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLNEEVQLEAMKCLTM 326 (533)
T ss_pred ccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3344777777665544 458899999999999999998553221111 12233344 34444456776666655555
Q ss_pred HhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 243 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 243 LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
++..-..-.-.++=.+..--+..++.+. +.++|..|.+++..|+.-
T Consensus 327 v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 327 VLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGALAKL 372 (533)
T ss_pred HHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHHHHHH
Confidence 4432111112223334555667777775 567899999999999753
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.00 E-value=3.3 Score=45.78 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQN 204 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN 204 (402)
+|.+.++|+|.++=||.+|.-+|.++-+|
T Consensus 136 ~p~IracleHrhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 136 MPSIRACLEHRHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred HHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence 55556799999999999999999999988
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.64 E-value=8.5 Score=42.92 Aligned_cols=159 Identities=13% Similarity=0.146 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 227 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s 227 (402)
-.|..|+..+..++-.-+++.++ +|.+++...+.+.+||...---|-.-|.++|... . =-|..+=+-|++
T Consensus 50 ~~KleAmKRIia~iA~G~dvS~~-----Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA--L---LSIntfQk~L~D 119 (968)
T KOG1060|consen 50 SLKLEAMKRIIALIAKGKDVSLL-----FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA--L---LSINTFQKALKD 119 (968)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHH-----HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce--e---eeHHHHHhhhcC
Confidence 46777877777766655555443 5666777777777777666555555555544211 0 124555566778
Q ss_pred CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCC
Q 015709 228 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 307 (402)
Q Consensus 228 ~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g 307 (402)
+++-+|..|+.++|+| |- +...-+ .+-.+.++..++ .+.+|+.|+.+|--|-. .+++....+
T Consensus 120 pN~LiRasALRvlSsI-Rv--p~IaPI----~llAIk~~~~D~--s~yVRk~AA~AIpKLYs-----Ld~e~k~qL---- 181 (968)
T KOG1060|consen 120 PNQLIRASALRVLSSI-RV--PMIAPI----MLLAIKKAVTDP--SPYVRKTAAHAIPKLYS-----LDPEQKDQL---- 181 (968)
T ss_pred CcHHHHHHHHHHHHhc-ch--hhHHHH----HHHHHHHHhcCC--cHHHHHHHHHhhHHHhc-----CChhhHHHH----
Confidence 8889999999999987 42 111111 122344555554 68899999999998863 355544433
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 308 FLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 308 ~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
+..+-.||...++-|.-.|+.|...++
T Consensus 182 -~e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 182 -EEVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred -HHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 345555666667777777777666554
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.41 E-value=2.1 Score=42.79 Aligned_cols=113 Identities=16% Similarity=0.119 Sum_probs=84.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH--hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccC
Q 015709 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY--VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (402)
Q Consensus 218 L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~--~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~ 295 (402)
+..|+.++.+.++.+|..|+--+.+++.. + .+.|. +.--++.|.+++... ++ ...|++++.|++.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~-~~~~~~~~~~~lk~l~qL~~~~--~~--~~~a~~alVnlsq------ 71 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--G-LQSLSKYSEALLKDLTQLLKDL--DP--AEPAATALVNLSQ------ 71 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--c-hhhhccchhhhHHHHHHHccCc--cc--ccHHHHHHHHHHh------
Confidence 45688999999999999999999988765 2 22332 234566677777754 22 5679999999974
Q ss_pred CCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHH
Q 015709 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALV 344 (402)
Q Consensus 296 ~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~ 344 (402)
++..+..+.+. +++.++..+..+....-+-....|.+|++....++..
T Consensus 72 ~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~l 119 (353)
T KOG2973|consen 72 KEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAAL 119 (353)
T ss_pred hHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHH
Confidence 45677777766 8999999998887778888888889999887655543
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=89.16 E-value=14 Score=44.06 Aligned_cols=146 Identities=12% Similarity=0.150 Sum_probs=99.0
Q ss_pred CCHHHHHHHHHHHhhcCCC---------CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHH
Q 015709 127 PSDAQLIQIAIDDLNNSTL---------SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWI 197 (402)
Q Consensus 127 ~~d~~lMk~al~~L~~~~~---------t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~v 197 (402)
+.....||-.+..+...+. +.-+.-.|.....++...-...+.|-. -+..++..|..+.+.+|..|..|
T Consensus 762 ~~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD~--yLk~Il~~l~e~~ialRtkAlKc 839 (1692)
T KOG1020|consen 762 ITVENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFDP--YLKLILSVLGENAIALRTKALKC 839 (1692)
T ss_pred hhhHHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhHH--HHHHHHHHhcCchHHHHHHHHHH
Confidence 3444566766666655420 111233445555555555555555443 36677888999999999999999
Q ss_pred HHHHhcCC------hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC
Q 015709 198 LGKASQNN------PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271 (402)
Q Consensus 198 Lg~~aqNN------p~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~ 271 (402)
|+.++.-. |.+|..|. .-+.+.+..||..|+--+|.-+-.++.-..++++ .+..-+.++
T Consensus 840 lS~ive~Dp~vL~~~dvq~~Vh---------~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~-----~i~erIlDt- 904 (1692)
T KOG1020|consen 840 LSMIVEADPSVLSRPDVQEAVH---------GRLNDSSASVREAALDLVGRFVLSIPELIFQYYD-----QIIERILDT- 904 (1692)
T ss_pred HHHHHhcChHhhcCHHHHHHHH---------HhhccchhHHHHHHHHHHhhhhhccHHHHHHHHH-----HHHhhcCCC-
Confidence 99999764 45555443 2344567889999999999988888887777763 344444444
Q ss_pred ccHHHHHHHHHHHHHHhhc
Q 015709 272 FEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 272 ~d~klq~kA~~lL~~L~~~ 290 (402)
.+.+|.++...+.++|.+
T Consensus 905 -gvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 905 -GVSVRKRVIKILRDICEE 922 (1692)
T ss_pred -chhHHHHHHHHHHHHHHh
Confidence 467899999999999964
|
|
| >PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels | Back alignment and domain information |
|---|
Probab=89.10 E-value=0.96 Score=42.13 Aligned_cols=96 Identities=16% Similarity=0.203 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh
Q 015709 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 267 (402)
Q Consensus 188 ~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL 267 (402)
..+-..+..+|...+++|+++|..+.++ ++.++..+.......-.-+...+.++.++|+.....+.+.. +..++.++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHH
Confidence 4677899999999999999999999876 45444444333333334567778889999999888887665 88888888
Q ss_pred cCCCccHHHHHHHHHHHHHHhhc
Q 015709 268 GNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 268 ~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
...+ -+.+-+.+++.||..
T Consensus 152 ~~~g----r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 152 RKHG----RQPRYLDFLSSLCVC 170 (207)
T ss_dssp -----------------------
T ss_pred HHcC----CChHHHHHHhhhccc
Confidence 8642 234567778888753
|
They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A. |
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.83 E-value=0.65 Score=50.37 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=64.4
Q ss_pred hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015709 167 ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (402)
Q Consensus 167 A~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~ 246 (402)
+..++..|+--.++.-|...--+||..|...++.++++.|..-.. ++..|+++++++-..+|.+|+++|-.+..|
T Consensus 366 ~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 366 EESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred ccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 446777788888888888888999999999999999999987664 567899999988788999999999887765
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.79 E-value=1.4 Score=46.50 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh----cCChh---cHHHHHh
Q 015709 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI----RNNLA---GQEMFYV 256 (402)
Q Consensus 184 ~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~Li----R~~~~---~~~~f~~ 256 (402)
.|.+.-++..|.+.++..+=..---++...-.++...++..+.+..-..|.|+.|++|++. -+-|. .+..|..
T Consensus 401 d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg 480 (728)
T KOG4535|consen 401 DSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG 480 (728)
T ss_pred chHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH
Confidence 4455667888888888877654444454445567777777777666678999999999854 34444 3344432
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 257 ~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
.--...+.....++....|++.+|...+.++..
T Consensus 481 ~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 481 LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ 513 (728)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence 222223333333444567899999999999874
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=88.60 E-value=2 Score=35.26 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=56.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 249 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~ 249 (402)
+...+..|+++.+.||.++...|+.+...+. ....-..+.+..++..++++++-+--.|+-+++.++.-+|.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3456778899999999999999999998776 11112235677888888888888888888889988877765
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=87.75 E-value=3.1 Score=37.31 Aligned_cols=100 Identities=18% Similarity=0.108 Sum_probs=74.4
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHH-HcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC
Q 015709 182 QLNHPDTDIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVK--SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 258 (402)
Q Consensus 182 lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~l-e~g~L~~Ll~LL~--s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g 258 (402)
++..++.+-...+..+++.+-+--|.+-..++ ..|.++.++.+.. +.+..+...++-+|+.-+-+ .....|+..+
T Consensus 51 ~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~ 128 (157)
T PF11701_consen 51 LLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKN 128 (157)
T ss_dssp HHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHH
T ss_pred HHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHH
Confidence 34444444667899999999999998777766 6688999999999 66678889999999987643 4456677789
Q ss_pred cHHHHHHhhcCCCccHH-HHHHHHHHH
Q 015709 259 GDLMLQDILGNSSFEIR-LHRKAVSLV 284 (402)
Q Consensus 259 Gi~~L~~lL~s~~~d~k-lq~kA~~lL 284 (402)
|++.|..+++... +.+ +|..|+-.|
T Consensus 129 ~~~~L~~~~~~~~-~~~~ir~~A~v~L 154 (157)
T PF11701_consen 129 YVSWLKELYKNSK-DDSEIRVLAAVGL 154 (157)
T ss_dssp CHHHHHHHTTTCC--HH-CHHHHHHHH
T ss_pred HHHHHHHHHcccc-chHHHHHHHHHHH
Confidence 9999999997543 444 666665544
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.67 E-value=0.74 Score=46.17 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=67.7
Q ss_pred CchhHHHhc--CCHHHHHHhcCCCCHH-HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 015709 165 DNANDLSKL--GGLSVLVGQLNHPDTD-IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVS 241 (402)
Q Consensus 165 DnA~~l~~l--Ggl~~Li~lL~s~~~~-Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS 241 (402)
+|+..|.+- .-+..|..+|++.++. .-+-||.=|+..+.--|+....+.++|+=..++.+++++++.++-.|+.|+-
T Consensus 345 ~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q 424 (432)
T COG5231 345 TNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQ 424 (432)
T ss_pred hhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHH
Confidence 455555553 3577888999887766 6678999999999999999999999999999999999999999998888887
Q ss_pred HHhc
Q 015709 242 SLIR 245 (402)
Q Consensus 242 ~LiR 245 (402)
.++.
T Consensus 425 ~~i~ 428 (432)
T COG5231 425 TCIS 428 (432)
T ss_pred HHHh
Confidence 6653
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=87.35 E-value=17 Score=39.14 Aligned_cols=168 Identities=13% Similarity=0.096 Sum_probs=94.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhc----C
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQ----N 204 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s----~~~~Ir~~Aa~vLg~~aq----N 204 (402)
++-+.+.+.+...+..+...++-.+...+...+ ...+..+..++++ +++-++..|.-.+|+++. +
T Consensus 359 ~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt-------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~ 431 (574)
T smart00638 359 LKFIKQWIKNKKITPLEAAQLLAVLPHTARYPT-------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVN 431 (574)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCC-------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcC
Confidence 333444555566665555555555555543222 1123445556654 356788888888877664 3
Q ss_pred ChHhHHHHHHcCcHHHHHHhhcC----CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc-CCCccHHHHHH
Q 015709 205 NPLVQKQVLELGALSKLMKMVKS----SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG-NSSFEIRLHRK 279 (402)
Q Consensus 205 Np~~Q~~~le~g~L~~Ll~LL~s----~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~-s~~~d~klq~k 279 (402)
++.+...+ -...++.|...|.. .+...+.-++-||+|+ +++.... .|...+. +...+..+|.-
T Consensus 432 ~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~--g~~~~i~---------~l~~~l~~~~~~~~~iR~~ 499 (574)
T smart00638 432 TPSCPDFV-LEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA--GHPSSIK---------VLEPYLEGAEPLSTFIRLA 499 (574)
T ss_pred CCCCChhh-HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc--CChhHHH---------HHHHhcCCCCCCCHHHHHH
Confidence 43333222 22356777766653 2334466788899987 4554433 3344443 33346789999
Q ss_pred HHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcC--CChHHHHHHHHHHH
Q 015709 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAAIK 332 (402)
Q Consensus 280 A~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~--~d~dv~E~aL~aL~ 332 (402)
|++++..++.. .+. .+-+.+..+..+ .++++|-.|..+|.
T Consensus 500 Av~Alr~~a~~-----~p~--------~v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 500 AILALRNLAKR-----DPR--------KVQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred HHHHHHHHHHh-----Cch--------HHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 99999988742 222 122334444443 37888888775443
|
|
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=87.32 E-value=5.4 Score=34.62 Aligned_cols=92 Identities=20% Similarity=0.165 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHH
Q 015709 234 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 313 (402)
Q Consensus 234 ~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 313 (402)
-..+..|+-+++..+.+.. .++..|..-|+++ ++.++..|+.++-.++.+ ..+.+...+.+..++..++
T Consensus 18 ~~~il~icd~I~~~~~~~k-----~a~raL~krl~~~--n~~vql~AL~lLd~~vkN----cg~~f~~~i~s~~fl~~l~ 86 (133)
T cd03561 18 WALNLELCDLINLKPNGPK-----EAARAIRKKIKYG--NPHVQLLALTLLELLVKN----CGKPFHLQVADKEFLLELV 86 (133)
T ss_pred HHHHHHHHHHHhCCCCCHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHh----CChHHHHHHhhHHHHHHHH
Confidence 4566778888887644333 2556777778876 678999999999988863 4555667777778888899
Q ss_pred HhhcC---CChHHHHHHHHHHHHHhc
Q 015709 314 DLTAS---ADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 314 ~lL~~---~d~dv~E~aL~aL~~L~~ 336 (402)
.++.. .+..++++++..+.....
T Consensus 87 ~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 87 KIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99975 488999999998887764
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.29 E-value=43 Score=39.08 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=78.8
Q ss_pred HHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 178 VLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 178 ~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~--g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
.+.... ++.++.+|..+-.+|..+.+. |.++..+... .....|.+-+++.+...+..++.+|+.+++.++.--..|
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~ 735 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDL 735 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 445544 667999999999999999987 5555544432 234555666666667789999999999999888545556
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015709 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~ 288 (402)
+.....++|+.. +.. +.+.|+.|..+|..++
T Consensus 736 i~k~I~EvIL~~-Ke~--n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 736 IPKLIPEVILSL-KEV--NVKARRNAFALLVFIG 766 (1176)
T ss_pred HHHHHHHHHHhc-ccc--cHHHHhhHHHHHHHHH
Confidence 666666666665 543 7788999999999988
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.14 E-value=11 Score=40.57 Aligned_cols=156 Identities=12% Similarity=0.130 Sum_probs=110.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH----HHHHHHHHHHHHHhcCChhcHHH
Q 015709 178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV----EEAVKALYTVSSLIRNNLAGQEM 253 (402)
Q Consensus 178 ~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~----~vr~kAl~ALS~LiR~~~~~~~~ 253 (402)
.+...+.+++..-|..|..-+..+.. .+..-..|+...++..|.+++.++.. .+..-.+.|.|.+..|.--..+.
T Consensus 87 ~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~ 165 (713)
T KOG2999|consen 87 RIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES 165 (713)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee
Confidence 45567788888888888888988886 46677889999999999999998753 45677888899887764433322
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHH
Q 015709 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 333 (402)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~ 333 (402)
+- ..++.-...+.+-+..+..+-..|+..+.++.. .+......+.++--+..|+.+|...|..++.+|+..+.+
T Consensus 166 ~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl-----~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 166 VS-NDFVVSMASYVNAKREDANTLLAALQMLESLVL-----GSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNA 239 (713)
T ss_pred cc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHh-----CChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 21 223333333333222233455567777777774 245567778888999999999999999999999888888
Q ss_pred HhcCChh
Q 015709 334 LLQLRTT 340 (402)
Q Consensus 334 L~~~~~~ 340 (402)
+....++
T Consensus 240 l~~~a~~ 246 (713)
T KOG2999|consen 240 LFRKAPD 246 (713)
T ss_pred HHhhCCh
Confidence 7765443
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.03 E-value=6.6 Score=43.34 Aligned_cols=178 Identities=19% Similarity=0.206 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC
Q 015709 149 DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS 228 (402)
Q Consensus 149 ~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~ 228 (402)
+--.||.-|..++. .|-|+|+. +-++.+|+|+-|=+|..|.-++-.+.---|+.-. -.+|+|..-|.++
T Consensus 125 e~giAL~GLS~fvT-pdLARDLa-----~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDp 193 (877)
T KOG1059|consen 125 EVGLALSGLSCIVT-PDLARDLA-----DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDP 193 (877)
T ss_pred hhhheecccccccC-chhhHHHH-----HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCC
Confidence 34457777776555 67888876 4578899999999999999999888765554322 4689999999999
Q ss_pred CHHHHHHHHHHHHHHhcCChhcHHH----HHh-----cCcHH--HHHHhhcC-CCccHHHHHHHHHHHHHHhhcccc-cC
Q 015709 229 FVEEAVKALYTVSSLIRNNLAGQEM----FYV-----EAGDL--MLQDILGN-SSFEIRLHRKAVSLVGDLAKCQLE-NM 295 (402)
Q Consensus 229 ~~~vr~kAl~ALS~LiR~~~~~~~~----f~~-----~gGi~--~L~~lL~s-~~~d~klq~kA~~lL~~L~~~~l~-~~ 295 (402)
++.|...|+.-|+-+.|.||.+.-. |++ .|-|= .|+.++.. ....+|+..|-+-=|++|...--. .-
T Consensus 194 Dp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSL 273 (877)
T KOG1059|consen 194 DPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSL 273 (877)
T ss_pred CchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHH
Confidence 9999999999999999999886433 332 12221 11222221 114667777776666666532100 00
Q ss_pred CCCcchhHH----hCC----------cHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 296 HKVEPPLFR----DRF----------FLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 296 ~~~~~~~l~----~~g----------~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
--+....++ ..| +++.|-.++...|++++=-.+.|+..++.-
T Consensus 274 lYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~kt 329 (877)
T KOG1059|consen 274 LYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT 329 (877)
T ss_pred HHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh
Confidence 000001111 112 344555566677888888888888777754
|
|
| >PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region [] | Back alignment and domain information |
|---|
Probab=86.94 E-value=14 Score=37.00 Aligned_cols=146 Identities=16% Similarity=0.076 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHc-------C----cHHHHHHhhcCCC-----HHHH-HHHHHHHHHHhcCCh
Q 015709 186 PDTDIRKISAWILGKASQNNPLVQKQVLEL-------G----ALSKLMKMVKSSF-----VEEA-VKALYTVSSLIRNNL 248 (402)
Q Consensus 186 ~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~-------g----~L~~Ll~LL~s~~-----~~vr-~kAl~ALS~LiR~~~ 248 (402)
..-++|..|+.|+-....+|+..|..|++. + ....|+.-|-+.+ ...+ -.|...++-++++++
T Consensus 50 ~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 50 QPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-H
T ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCH
Confidence 367899999999999999999999999985 1 1223444443111 2333 378899999999999
Q ss_pred hcHHHHHhc------Cc------HHHHHHhhcCC---CccHHHHHHHHHHHHHHhhcccccCCCCcchhHH-hCCcHHHH
Q 015709 249 AGQEMFYVE------AG------DLMLQDILGNS---SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR-DRFFLKSV 312 (402)
Q Consensus 249 ~~~~~f~~~------gG------i~~L~~lL~s~---~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~-~~g~v~~L 312 (402)
.+.+....- .| ++.+..+|... +.+++++.--+.+|..-+. .++.....|. +..-++.|
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~-----e~p~AV~~FL~~~s~l~~L 204 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLF-----ECPDAVNDFLSEGSNLQSL 204 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHT-----T-HHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHh-----CCHHHHHHHHcCcchHHHH
Confidence 987776542 12 34455555541 3467777666666665553 3455555555 45689999
Q ss_pred HHhhcC-C--ChHHHHHHHHHHHHHhc
Q 015709 313 VDLTAS-A--DLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 313 v~lL~~-~--d~dv~E~aL~aL~~L~~ 336 (402)
++.... + ++-+|--++..|+-+..
T Consensus 205 i~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 205 IEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 997543 3 44455444444444444
|
p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A. |
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=86.79 E-value=8.8 Score=34.59 Aligned_cols=108 Identities=15% Similarity=0.098 Sum_probs=73.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC--cHHHHHHhhcCCC-HHHHHHHHHHHHH---HhcCChh
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMVKSSF-VEEAVKALYTVSS---LIRNNLA 249 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g--~L~~Ll~LL~s~~-~~vr~kAl~ALS~---LiR~~~~ 249 (402)
+..+.++|+++++.-|+.++..++..+++++ .+.+.+++ .+..|+++|+..+ ..++..|+.+++. .++++|.
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5567789999999999999999999999874 24454443 5888999999865 4566666666665 5566776
Q ss_pred cHHHHHhcCc---HHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 250 GQEMFYVEAG---DLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 250 ~~~~f~~~gG---i~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
-..++.-... ++.++.++++ ......++.++..+..
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD----SSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc----cccHHHHHHHHHHHHH
Confidence 6655544332 3334444442 2356678888888775
|
|
| >KOG1566 consensus Conserved protein Mo25 [Function unknown] | Back alignment and domain information |
|---|
Probab=86.75 E-value=37 Score=34.17 Aligned_cols=105 Identities=15% Similarity=0.177 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHhcCChhcHHHHHhcCc----HHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCC-cchhHHh
Q 015709 231 EEAVKALYTVSSLIRNNLAGQEMFYVEAG----DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-EPPLFRD 305 (402)
Q Consensus 231 ~vr~kAl~ALS~LiR~~~~~~~~f~~~gG----i~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~-~~~~l~~ 305 (402)
.+..-|+.....+++.+......|...+- .+.-..++.+.+ .-.++.+..++.++... ..+.. ....+.+
T Consensus 181 diasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~N--yvtkrqs~kllg~llld---r~N~~~M~kYiss 255 (342)
T KOG1566|consen 181 DIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSEN--YVTKRQSLKLLGELLLD---RSNSAVMTKYISS 255 (342)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccc--eehHHHHHHhHHHHHhC---CCcHHHHHHHhcC
Confidence 34556677777777777777888877664 344666788763 45789999999998853 22322 3345556
Q ss_pred CCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChh
Q 015709 306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 340 (402)
Q Consensus 306 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~ 340 (402)
..-++.+..+|+.+...+|-.|-......+..+.+
T Consensus 256 ~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK 290 (342)
T KOG1566|consen 256 PENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNK 290 (342)
T ss_pred HHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCC
Confidence 78889999999999899999999988888877654
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=86.49 E-value=7.2 Score=42.16 Aligned_cols=165 Identities=14% Similarity=0.090 Sum_probs=85.8
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhcCChHh----
Q 015709 137 IDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQNNPLV---- 208 (402)
Q Consensus 137 l~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s----~~~~Ir~~Aa~vLg~~aqNNp~~---- 208 (402)
++.+.+...+..+....+-.|...+...+ . ..+..+..++++ .++.++..|.-.+|+++...-..
T Consensus 401 ~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt--~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~ 473 (618)
T PF01347_consen 401 KDLIKSKKLTDDEAAQLLASLPFHVRRPT--E-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSA 473 (618)
T ss_dssp HHHHHTT-S-HHHHHHHHHHHHHT-------H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhhcCCCC--H-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccc
Confidence 33444455565666666666666552221 1 123334445544 46778888888888777431111
Q ss_pred -----HHHHHHcCcHHHHHHhhc----CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC-CccHHHHH
Q 015709 209 -----QKQVLELGALSKLMKMVK----SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-SFEIRLHR 278 (402)
Q Consensus 209 -----Q~~~le~g~L~~Ll~LL~----s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~-~~d~klq~ 278 (402)
....+....++.|...+. ..+...+..++-||+|+ +++. .++.|..++.+. ..+..+|.
T Consensus 474 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g~~~---------~i~~l~~~i~~~~~~~~~~R~ 542 (618)
T PF01347_consen 474 EFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--GHPE---------SIPVLLPYIEGKEEVPHFIRV 542 (618)
T ss_dssp -------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T-GG---------GHHHHHTTSTTSS-S-HHHHH
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--CCch---------hhHHHHhHhhhccccchHHHH
Confidence 111222345666776666 22345678899999998 3443 445566666654 34667888
Q ss_pred HHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcC--CChHHHHHHHHHHH
Q 015709 279 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAAIK 332 (402)
Q Consensus 279 kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~--~d~dv~E~aL~aL~ 332 (402)
.|++++..++.. .+ ..+.+.+..+..+ .++++|-.|..+|.
T Consensus 543 ~Ai~Alr~~~~~-----~~--------~~v~~~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 543 AAIQALRRLAKH-----CP--------EKVREILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp HHHHTTTTGGGT------H--------HHHHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc-----Cc--------HHHHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 999998877531 11 1223344444443 37788888875443
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=86.46 E-value=7.8 Score=38.15 Aligned_cols=112 Identities=17% Similarity=0.048 Sum_probs=78.0
Q ss_pred CcHHHHH-HhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhccccc
Q 015709 216 GALSKLM-KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (402)
Q Consensus 216 g~L~~Ll-~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~ 294 (402)
+.+..|+ .-+.+.++.+|..|+-+||-.+--++..... -+..+.+.++.+ +..++..|+.++.+++...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~--~~~v~~~al~~l~Dll~~~--- 95 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKD--DEEVKITALKALFDLLLTH--- 95 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHc---
Confidence 4455555 5677778899999998888544334332222 345677777554 6779999999999998632
Q ss_pred CCCCcch-------hHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 295 MHKVEPP-------LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 295 ~~~~~~~-------~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
+....+ ......+++.+.+.|.+.+++++..++..++.|+-.+
T Consensus 96 -g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 96 -GIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred -CchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 212111 1223567888889999999999999999999987654
|
|
| >PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning | Back alignment and domain information |
|---|
Probab=86.24 E-value=5.6 Score=33.13 Aligned_cols=92 Identities=13% Similarity=0.096 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhcCChHhHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh
Q 015709 189 DIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 267 (402)
Q Consensus 189 ~Ir~~Aa~vLg~~aqNNp~~Q~~~l-e~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL 267 (402)
+||..|..-|-+=-.++--+-..+. +...+..|+..++.++......++.-|+.+++ +|.+...+.+.|+.+.|.++=
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHH
Confidence 6777776655443333333333333 45678899999998887788899999999887 578888899999999988765
Q ss_pred cCCCccHHHHHHHHHH
Q 015709 268 GNSSFEIRLHRKAVSL 283 (402)
Q Consensus 268 ~s~~~d~klq~kA~~l 283 (402)
... ++.++...-.+
T Consensus 81 ~~~--~~~~~~~id~i 94 (98)
T PF14726_consen 81 PNV--EPNLQAEIDEI 94 (98)
T ss_pred hcC--CHHHHHHHHHH
Confidence 432 45455544433
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.24 E-value=4.4 Score=42.89 Aligned_cols=176 Identities=15% Similarity=0.129 Sum_probs=97.0
Q ss_pred HHHHHHHHHccCCCCchhHHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc----C--ChHhHHHHHHcCcHHHHHH
Q 015709 151 QRALQELLILVEPIDNANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQ----N--NPLVQKQVLELGALSKLMK 223 (402)
Q Consensus 151 ~~AL~~L~~Lve~iDnA~~l~-~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aq----N--Np~~Q~~~le~g~L~~Ll~ 223 (402)
..|+..+.-+|-..-.+.+.. -......++..|.+..-..|..|+|.+|++.- | ||.++..=...-.|.++++
T Consensus 409 ~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~ 488 (728)
T KOG4535|consen 409 AAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLR 488 (728)
T ss_pred HHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence 344444444443333333321 12344555566666677899999999999874 3 4444443333334566666
Q ss_pred hhcCC---CHHHHHHHHHHHHHHhcCChhcH---HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCC
Q 015709 224 MVKSS---FVEEAVKALYTVSSLIRNNLAGQ---EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 297 (402)
Q Consensus 224 LL~s~---~~~vr~kAl~ALS~LiR~~~~~~---~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~ 297 (402)
..... ...|+..|..||+++..--.+.+ -.....|.+..+...--.+ ...++|-+|+.+++||..+ +
T Consensus 489 ~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~-~~~kV~WNaCya~gNLfkn------~ 561 (728)
T KOG4535|consen 489 SAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTE-AAMKVRWNACYAMGNLFKN------P 561 (728)
T ss_pred HHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecc-cccccchHHHHHHHHhhcC------c
Confidence 55432 35678888888888764321111 1111223333333332223 3678999999999999853 2
Q ss_pred CcchhHHhCCcHH----HHHHhhcC-CChHHHHHHHHHHHHHh
Q 015709 298 VEPPLFRDRFFLK----SVVDLTAS-ADLDLQEKALAAIKNLL 335 (402)
Q Consensus 298 ~~~~~l~~~g~v~----~Lv~lL~~-~d~dv~E~aL~aL~~L~ 335 (402)
.. .+.+..|-+ .|..++.. .|-++|-.|+.+|..-.
T Consensus 562 a~--~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 562 AL--PLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred cc--cccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 21 123333333 34444443 47788888887665443
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=86.05 E-value=8.9 Score=39.49 Aligned_cols=161 Identities=14% Similarity=0.116 Sum_probs=103.0
Q ss_pred HHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCCCC----------------------------------HHHHHHHHHH
Q 015709 153 ALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPD----------------------------------TDIRKISAWI 197 (402)
Q Consensus 153 AL~~L~~Lve~i-DnA~~l~~lGgl~~Li~lL~s~~----------------------------------~~Ir~~Aa~v 197 (402)
|+..|+.++... +-...|..+||+..+++.|..+- ..+...-.+.
T Consensus 4 av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~ 83 (379)
T PF06025_consen 4 AVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKF 83 (379)
T ss_pred HHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHH
Confidence 445555555554 33456778888888865553210 1122233455
Q ss_pred HHHHhc---CChHhHHHHHH-cCcHHHHHHhhcCCC---HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc-C
Q 015709 198 LGKASQ---NNPLVQKQVLE-LGALSKLMKMVKSSF---VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG-N 269 (402)
Q Consensus 198 Lg~~aq---NNp~~Q~~~le-~g~L~~Ll~LL~s~~---~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~-s 269 (402)
|..+.+ ++...-..+++ ...+..|-.++++.. ..+-.-|+..++..+.+-|.....+.++|-++.+.+.+. .
T Consensus 84 l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~ 163 (379)
T PF06025_consen 84 LSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAK 163 (379)
T ss_pred HHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhcc
Confidence 556666 33333344555 334445556666644 556788999999999999999999999999999988887 3
Q ss_pred C-CccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC
Q 015709 270 S-SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA 319 (402)
Q Consensus 270 ~-~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~ 319 (402)
. -.+..+-.-.-.++..||- +..-.+.+.+.+.++.+.+++.++
T Consensus 164 ~i~~s~e~l~~lP~~l~AicL------N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 164 GILPSSEVLTSLPNVLSAICL------NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred CCCCcHHHHHHHHHHHhHHhc------CHHHHHHHHhcChHHHHHHHhCCH
Confidence 2 1233345555566777774 456677778888888888877665
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.66 E-value=51 Score=37.38 Aligned_cols=189 Identities=13% Similarity=0.081 Sum_probs=123.4
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
+...+++.-+.++.. --|-.++..|..++++-+-+..+..-|.+...+..|++.++=|=-.|...+.++|.-
T Consensus 727 e~~qeai~sl~d~qv--pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev------ 798 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQV--PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV------ 798 (982)
T ss_pred HHHHHHHHHhcCCcc--cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh------
Confidence 455666666666643 357889999999999888888888889999999999999998888888888888753
Q ss_pred HHHHcCcHHHHHH-hhcCCC---HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015709 211 QVLELGALSKLMK-MVKSSF---VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (402)
Q Consensus 211 ~~le~g~L~~Ll~-LL~s~~---~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~ 286 (402)
.....+|.|.. ..++.+ ++.+.+.=-||..+++--.+-...+.+ --+........++ +...|.-++..++.
T Consensus 799 --y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep--d~~~RaSS~a~lg~ 873 (982)
T KOG4653|consen 799 --YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP--DHEFRASSLANLGQ 873 (982)
T ss_pred --cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc--hHHHHHhHHHHHHH
Confidence 44578888887 444432 244555556666666543332222221 1222222333443 67789999999999
Q ss_pred HhhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHhcCC
Q 015709 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 287 L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~ 338 (402)
||.- ..-...+.+ +.++..++.+...+ .+-+|..|...+..+....
T Consensus 874 Lcq~----~a~~vsd~~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~t 920 (982)
T KOG4653|consen 874 LCQL----LAFQVSDFF--HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGT 920 (982)
T ss_pred HHHH----HhhhhhHHH--HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhcc
Confidence 8852 011111122 23455566666665 6778888988888887653
|
|
| >KOG1788 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.61 E-value=1.4 Score=50.35 Aligned_cols=126 Identities=21% Similarity=0.232 Sum_probs=86.7
Q ss_pred HHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhc
Q 015709 238 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA 317 (402)
Q Consensus 238 ~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~ 317 (402)
-.|-++++++..++..|.+++|+.+|+.++-++ .-|.-.+.+++.|... ++.+ +.+..+-.+|+.|+
T Consensus 664 DcLisllKnnteNqklFreanGvklilpflind----ehRSslLrivscLitv-----dpkq----vhhqelmalVdtLk 730 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFREANGVKLILPFLIND----EHRSSLLRIVSCLITV-----DPKQ----VHHQELMALVDTLK 730 (2799)
T ss_pred HHHHHHHhccchhhHHHHhhcCceEEEEeeech----HHHHHHHHHHHHHhcc-----Cccc----ccHHHHHHHHHHHH
Confidence 456789999999999999999999999988653 2466677778888753 3332 12344556777776
Q ss_pred CC------------ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHH--HHhHHhhhhhhHhhhHH
Q 015709 318 SA------------DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR--QQLQEVMLEEDQRDYAM 376 (402)
Q Consensus 318 ~~------------d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~--~~~~~l~~~e~~~~y~~ 376 (402)
++ ..++....+.+|+.+.......+.+|+..+|+.-++..|. +...+++.+-|+--|.+
T Consensus 731 sgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyik 803 (2799)
T KOG1788|consen 731 SGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIK 803 (2799)
T ss_pred hcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHH
Confidence 52 2345666778888888777678889998888766666553 23555665555555543
|
|
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.51 E-value=22 Score=34.40 Aligned_cols=187 Identities=18% Similarity=0.144 Sum_probs=112.2
Q ss_pred HHHHHHHHHHccCC-CCchhHHHhcCCHHH-HHH-------hcCC----CCHHHHHHHHHHHHHHhcCChHhHHHHHHcC
Q 015709 150 SQRALQELLILVEP-IDNANDLSKLGGLSV-LVG-------QLNH----PDTDIRKISAWILGKASQNNPLVQKQVLELG 216 (402)
Q Consensus 150 k~~AL~~L~~Lve~-iDnA~~l~~lGgl~~-Li~-------lL~s----~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g 216 (402)
|+.||++|-.--++ .|.|-.+-..-|++. |++ +|+- ....=|...+-.|-.+...+|+.+..|++..
T Consensus 62 kEqaL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk~~Fl~Ah 141 (315)
T COG5209 62 KEQALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETKKVFLDAH 141 (315)
T ss_pred HHHHHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchheeeeecc
Confidence 45577777765554 467776666555443 332 2221 2233344334444444446899999998875
Q ss_pred c---HHHHHHhhcCCC--HHHHHHHHHHHHHHhcCChhcHHHH-HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 217 A---LSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMF-YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 217 ~---L~~Ll~LL~s~~--~~vr~kAl~ALS~LiR~~~~~~~~f-~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
. +-+.+...++.+ +-.|..++..|++++.|..+-.-.| .....++.+..++... +.-.|.-|++.+.-+.-
T Consensus 142 iplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~g--SElSktvaifI~qkil~- 218 (315)
T COG5209 142 IPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELG--SELSKTVAIFIFQKILG- 218 (315)
T ss_pred cceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhh--hHHHHHHHHHHHHHHhc-
Confidence 3 223333333333 2358999999999999965555555 4578999999999876 34567788888877653
Q ss_pred ccccCCCCc----chhHHh----CCcHHHHHHh-hcCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 015709 291 QLENMHKVE----PPLFRD----RFFLKSVVDL-TASADLDLQEKALAAIKNLLQLRTTEALVL 345 (402)
Q Consensus 291 ~l~~~~~~~----~~~l~~----~g~v~~Lv~l-L~~~d~dv~E~aL~aL~~L~~~~~~~~~~~ 345 (402)
+..- ++.+.. ..+++.++.. ...+...+..+++++-..|...+ ..|+.+
T Consensus 219 -----dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p-~aR~lL 276 (315)
T COG5209 219 -----DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKP-HARALL 276 (315)
T ss_pred -----cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCH-hHHHHH
Confidence 2211 122211 2333444433 34457788899998888887664 355544
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=85.50 E-value=9.6 Score=34.28 Aligned_cols=144 Identities=17% Similarity=0.168 Sum_probs=87.4
Q ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 176 LSVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 176 l~~Li~lL~s-~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
++.|+++|+. .+.++|..|.+++|.+-.=.|.-.+.+....- .-. -...+.......+ ...+..+..+.|
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~--~~~~~~~~~~~~l-----~~~~~~~~~ee~ 82 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKS--SENSNDESTDISL-----PMMGISPSSEEY 82 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccc--cccccccchhhHH-----hhccCCCchHHH
Confidence 5667788855 56999999999999998777754443322111 000 0000011111111 112333456778
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
+-...+..|..+|++++. ..-+..++.++.++... .+....+.+- -+++.++..+++.+...+|..+.-|..|
T Consensus 83 y~~vvi~~L~~iL~D~sL-s~~h~~vv~ai~~If~~----l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSL-SSHHTAVVQAIMYIFKS----LGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHh----cCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 888888999999987742 33455677777777642 2333344442 4788888888876668888888777766
Q ss_pred h
Q 015709 335 L 335 (402)
Q Consensus 335 ~ 335 (402)
.
T Consensus 156 v 156 (160)
T PF11865_consen 156 V 156 (160)
T ss_pred H
Confidence 5
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.40 E-value=9.5 Score=41.60 Aligned_cols=71 Identities=21% Similarity=0.146 Sum_probs=57.8
Q ss_pred cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH---hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015709 173 LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL---VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (402)
Q Consensus 173 lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~---~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~ 246 (402)
.|-+|.|...|++.+..|.......+|+++.|.|+ .++++.- ---|+++|++.+.++|..|.-.++++.|-
T Consensus 687 ~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRI---cfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 687 SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRI---CFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHH---HHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 35688899999999999999999999999999886 4444432 13578888888899999998888888765
|
|
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=85.37 E-value=5.8 Score=35.08 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHH
Q 015709 234 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 313 (402)
Q Consensus 234 ~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 313 (402)
-...-.|+-+++..+.+.. .++..|..=|+++ ++.++..|+.++-.++.+ .+..+...+.+.+++..|+
T Consensus 22 w~~ileicD~In~~~~~~k-----~a~ral~krl~~~--n~~vql~AL~LLe~~vkN----CG~~fh~evas~~fl~~l~ 90 (142)
T cd03569 22 LASILEICDMIRSKDVQPK-----YAMRALKKRLLSK--NPNVQLYALLLLESCVKN----CGTHFHDEVASREFMDELK 90 (142)
T ss_pred HHHHHHHHHHHhCCCCCHH-----HHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH----CCHHHHHHHhhHHHHHHHH
Confidence 3455667777776544322 3566777778875 688999999999988863 4555667778899999999
Q ss_pred HhhcC-CChHHHHHHHHHHHHHh
Q 015709 314 DLTAS-ADLDLQEKALAAIKNLL 335 (402)
Q Consensus 314 ~lL~~-~d~dv~E~aL~aL~~L~ 335 (402)
.++.. .++.++++++..+.+-+
T Consensus 91 ~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 91 DLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHcccCCHHHHHHHHHHHHHHH
Confidence 99974 58899999998888765
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] | Back alignment and domain information |
|---|
Probab=85.24 E-value=34 Score=34.36 Aligned_cols=159 Identities=12% Similarity=0.058 Sum_probs=107.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhc-CChHhHHHHHHc-----CcHHHHHHhhcCC--C--------HHHHHHH-HH
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQ-NNPLVQKQVLEL-----GALSKLMKMVKSS--F--------VEEAVKA-LY 238 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aq-NNp~~Q~~~le~-----g~L~~Ll~LL~s~--~--------~~vr~kA-l~ 238 (402)
+..+.+.|++..+.+...+.+++..++. ++......++.. ..+++|+..=... . +.+|... -+
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7778889999999999999999999999 887777777654 2444444332211 1 1677655 45
Q ss_pred HHHHHhcCChhcHHHHHhcCc-HHHHHHhhcCCCccHHHHHHHHHHHHH-HhhcccccCCCCcchhHHhCCcHHHHHHhh
Q 015709 239 TVSSLIRNNLAGQEMFYVEAG-DLMLQDILGNSSFEIRLHRKAVSLVGD-LAKCQLENMHKVEPPLFRDRFFLKSVVDLT 316 (402)
Q Consensus 239 ALS~LiR~~~~~~~~f~~~gG-i~~L~~lL~s~~~d~klq~kA~~lL~~-L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL 316 (402)
.||-+..+++.....++..++ +..+.+-|..+ +..+....+..+.. +..+. ......+-.+.....+..|+.+-
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D--~~~~v~~iL~~l~~~Vl~~~--~v~r~~K~~~fn~~~L~~l~~Ly 213 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD--PPETVILILETLKDKVLKDS--SVSRSTKCKLFNEWTLSQLASLY 213 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCC--CHHHHHHHHHHHHHHhccCC--CCChhhhhhhcCHHHHHHHHHHh
Confidence 666665556777777776554 45555556554 45566666666663 43221 11234455566778899999988
Q ss_pred cCCCh----HHHHHHHHHHHHHhcCC
Q 015709 317 ASADL----DLQEKALAAIKNLLQLR 338 (402)
Q Consensus 317 ~~~d~----dv~E~aL~aL~~L~~~~ 338 (402)
..++. .+.+.+-..|..+++++
T Consensus 214 ~~~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 214 SRDGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred cccCCcccchHHHHHHHHHHHHhcCC
Confidence 87777 88999988888888765
|
The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=85.08 E-value=41 Score=33.53 Aligned_cols=150 Identities=17% Similarity=0.207 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC---CchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHh---
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI---DNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKAS--- 202 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i---DnA~~l~~lGgl~~Li~lL~s--~~~~Ir~~Aa~vLg~~a--- 202 (402)
+++-.++..++... + +++.-|+..+.-++=++ +.+..+.+ ...|+|.+.+.. ..+.+|..++.+||-++
T Consensus 86 tL~~~~~k~lkkg~-~-~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~ 162 (309)
T PF05004_consen 86 TLLDALLKSLKKGK-S-EEQALAARALALLALTLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVG 162 (309)
T ss_pred HHHHHHHHHhccCC-H-HHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhh
Confidence 45555666666544 3 56666777776665443 56667666 356777777754 45678878887777764
Q ss_pred cCChHhHHHHHHcCcHHHHH--HhhcCC----------CHHHHHHHHHHHHHHhcCChhc-HHHHHhcCcHHHHHHhhcC
Q 015709 203 QNNPLVQKQVLELGALSKLM--KMVKSS----------FVEEAVKALYTVSSLIRNNLAG-QEMFYVEAGDLMLQDILGN 269 (402)
Q Consensus 203 qNNp~~Q~~~le~g~L~~Ll--~LL~s~----------~~~vr~kAl~ALS~LiR~~~~~-~~~f~~~gGi~~L~~lL~s 269 (402)
.+.+..-...++ .+..+. ...+++ ++.+...|+.+-+-|+..-+.. ...+ -...++.|..+|.+
T Consensus 163 ~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~-~~~~~~~l~~lL~s 239 (309)
T PF05004_consen 163 GSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDL-LEEALPALSELLDS 239 (309)
T ss_pred cCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHhcC
Confidence 334433332111 233121 112221 2457888888888888766552 2222 23468999999998
Q ss_pred CCccHHHHHHHHHHHHHHh
Q 015709 270 SSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 270 ~~~d~klq~kA~~lL~~L~ 288 (402)
+ +..+|.-|--.|.-|.
T Consensus 240 ~--d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 240 D--DVDVRIAAGEAIALLY 256 (309)
T ss_pred C--CHHHHHHHHHHHHHHH
Confidence 7 6778888888877554
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.05 E-value=29 Score=37.87 Aligned_cols=127 Identities=21% Similarity=0.161 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 147 LEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDn-A~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
++..+.-+..+-++-.+-|- ..+|+. |-+..++..+.+++..||...+.+|+.++-+-.+. +..+-.|.+.+|.+-+
T Consensus 64 ~dRil~fl~~f~~Y~~~~dpeg~~~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~ 141 (885)
T COG5218 64 PDRILSFLKRFFEYDMPDDPEGEELVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERL 141 (885)
T ss_pred HHHHHHHHHHHHHhcCCCChhhhHHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHH
Confidence 34444444444443333332 244443 55677888889999999999999999998653333 3455568888888877
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAV 281 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~ 281 (402)
-+-.+.||..|+.+|+-.-. -..+.+-++ ...|+.+++.+. +..+|+-|+
T Consensus 142 ~DRE~~VR~eAv~~L~~~Qe-~~~neen~~----~n~l~~~vqnDP-S~EVRr~al 191 (885)
T COG5218 142 FDREKAVRREAVKVLCYYQE-MELNEENRI----VNLLKDIVQNDP-SDEVRRLAL 191 (885)
T ss_pred hcchHHHHHHHHHHHHHHHh-ccCChHHHH----HHHHHHHHhcCc-HHHHHHHHH
Confidence 77778899999999997642 222333333 337777787653 344666553
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=84.72 E-value=25 Score=37.77 Aligned_cols=109 Identities=15% Similarity=0.158 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc-CC--CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015709 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 262 (402)
Q Consensus 186 ~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~-s~--~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~ 262 (402)
.+.+-+..+..+|||+.. | ..++.|..++. +. +..+|..|+||+..+...+|.- .-+.
T Consensus 458 ~~~~~~~~~LkaLGN~g~--~---------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~ 518 (574)
T smart00638 458 GDEEEIQLYLKALGNAGH--P---------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEV 518 (574)
T ss_pred CCchheeeHHHhhhccCC--h---------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHH
Confidence 345556667777777753 3 23455556665 22 3568999999999887766653 2345
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHH
Q 015709 263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKAL 328 (402)
Q Consensus 263 L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL 328 (402)
|..++.+...+..+|.-|..++-. .+|. ...+..+++.+..+ +..|.-.+.
T Consensus 519 l~~i~~n~~e~~EvRiaA~~~lm~--------t~P~-------~~~l~~ia~~l~~E~~~QV~sfv~ 570 (574)
T smart00638 519 LLPIYLNRAEPPEVRMAAVLVLME--------TKPS-------VALLQRIAELLNKEPNLQVASFVY 570 (574)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHh--------cCCC-------HHHHHHHHHHHhhcCcHHHHHHhH
Confidence 677777665566677766554432 1233 34566677777665 444444333
|
|
| >KOG2676 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.16 E-value=0.98 Score=45.83 Aligned_cols=64 Identities=13% Similarity=0.037 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015709 193 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS--SFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (402)
Q Consensus 193 ~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s--~~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 256 (402)
+-.+.||++|..+|..|+.+.+.||++.++.-..- .+|-++...++++-.++.+|..+|+.+.+
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 35678999999999999999999999999876553 34778999999999999999999887643
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.06 E-value=21 Score=38.73 Aligned_cols=149 Identities=14% Similarity=0.132 Sum_probs=92.9
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc
Q 015709 181 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 259 (402)
Q Consensus 181 ~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~L-L~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG 259 (402)
.+|.+.++-+|...+..++.+--..- ..|++..|+.. +++.++.||..|+.||+-+|-..+. .
T Consensus 523 ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~ 586 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------L 586 (926)
T ss_pred HHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------h
Confidence 46677888888888877766543211 24678888888 6666789999999999987655443 3
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCCh
Q 015709 260 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339 (402)
Q Consensus 260 i~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 339 (402)
+.-.+++|... .++-+|--.++++.-.|... .+ .-.+..|-.+...++.-+|..|+-++..++..
T Consensus 587 lv~tvelLs~s-hN~hVR~g~AvaLGiacag~---G~---------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q-- 651 (926)
T COG5116 587 LVGTVELLSES-HNFHVRAGVAVALGIACAGT---GD---------KVATDILEALMYDTNDFVRQSAMIAVGMILMQ-- 651 (926)
T ss_pred hhHHHHHhhhc-cchhhhhhhHHHhhhhhcCC---cc---------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh--
Confidence 33455666544 36668888888888777531 11 11222333344444555677777777765532
Q ss_pred hhHHHHHhcCCcHHHHHHHHHHhHHhhh
Q 015709 340 TEALVLKDFCGLDTALERLRQQLQEVML 367 (402)
Q Consensus 340 ~~~~~~~~~~GL~~~L~~L~~~~~~l~~ 367 (402)
| ...|-|-..+++.++..++.
T Consensus 652 -~------n~~Lnp~v~~I~k~f~~vI~ 672 (926)
T COG5116 652 -C------NPELNPNVKRIIKKFNRVIV 672 (926)
T ss_pred -c------CcccChhHHHHHHHHHHHHh
Confidence 1 33455556666777776664
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=83.89 E-value=6.1 Score=42.73 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=72.4
Q ss_pred HHHHHHhcC----CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhcCCh
Q 015709 176 LSVLVGQLN----HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNNL 248 (402)
Q Consensus 176 l~~Li~lL~----s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~---~~~vr~kAl~ALS~LiR~~~ 248 (402)
++.|...|. ..+.+-+..+..+|||+.. | ..++.|..++... +..+|..|++|+..+...+|
T Consensus 488 ~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~ 556 (618)
T PF01347_consen 488 VPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP 556 (618)
T ss_dssp THHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc
Confidence 444544443 3556777888888888853 2 3688888888877 45789999999998877776
Q ss_pred hcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHH
Q 015709 249 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKA 327 (402)
Q Consensus 249 ~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~a 327 (402)
.- ..+.|..++.+...+..+|..|..+|-. + +|. ...+..++..|..+ +..|.--+
T Consensus 557 ~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~-~-------~P~-------~~~l~~i~~~l~~E~~~QV~sfv 613 (618)
T PF01347_consen 557 EK--------VREILLPIFMNTTEDPEVRIAAYLILMR-C-------NPS-------PSVLQRIAQSLWNEPSNQVASFV 613 (618)
T ss_dssp HH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHH-T-----------------HHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HH--------HHHHHHHHhcCCCCChhHHHHHHHHHHh-c-------CCC-------HHHHHHHHHHHhhCchHHHHHHH
Confidence 43 2345677777665566677666544332 1 233 34566777777655 45555444
Q ss_pred HH
Q 015709 328 LA 329 (402)
Q Consensus 328 L~ 329 (402)
..
T Consensus 614 ~S 615 (618)
T PF01347_consen 614 YS 615 (618)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.16 E-value=23 Score=41.49 Aligned_cols=69 Identities=20% Similarity=0.199 Sum_probs=41.1
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 260 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 260 i~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
+++|.+.|.+. ++-+..+|+..++.|+... --.+..+ -.+++.+.-+|-.++.=+|..++..+....+.
T Consensus 658 lPLl~Q~ltD~--EE~Viv~aL~~ls~Lik~~-----ll~K~~v--~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 658 LPLLQQGLTDG--EEAVIVSALGSLSILIKLG-----LLRKPAV--KDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHhccCc--chhhHHHHHHHHHHHHHhc-----ccchHHH--HHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 34555555554 4557777888877777531 0111111 12444455567778888888888888777654
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.15 E-value=81 Score=35.55 Aligned_cols=191 Identities=10% Similarity=-0.010 Sum_probs=105.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
.|...+.-+..+ +.|-|...|..+..++.-.-.-..+....-+|.++... ....+.=|..--.++-+.+. ..+
T Consensus 637 vmlil~rEf~sP--DeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~----ia~ 710 (1172)
T KOG0213|consen 637 VMLILIREFGSP--DEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVE----IAA 710 (1172)
T ss_pred HHHHHHHhhCCC--hHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHH----HHH
Confidence 465555555554 45677888999999886544444555555666665433 11110000000011111110 111
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~-~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
.+-....+..++.=++++++..|.-+..+++.++..-+. ....-.+.--+..+...++....+..+-.....++.+=..
T Consensus 711 KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg 790 (1172)
T KOG0213|consen 711 KVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALG 790 (1172)
T ss_pred HhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 111122356677777788888898888998888765332 1333333344555566666544445455555555554321
Q ss_pred cccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 290 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
...++.+ .-+|..+...|+++.++++.+++..+..++..
T Consensus 791 -------~r~kpyl--pqi~stiL~rLnnksa~vRqqaadlis~la~V 829 (1172)
T KOG0213|consen 791 -------GRVKPYL--PQICSTILWRLNNKSAKVRQQAADLISSLAKV 829 (1172)
T ss_pred -------hccccch--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 1112222 12456677789999999999999999988743
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.12 E-value=8.9 Score=38.39 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC--CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-C
Q 015709 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN-N 205 (402)
Q Consensus 129 d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i--DnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN-N 205 (402)
.-..+++++..|.+.+ -+.++.+|..+..|.+-. .....|++ .+..+++-++++...|=..||.+++.+.++ |
T Consensus 86 p~~al~~~l~~L~s~d--W~~~vdgLn~irrLs~fh~e~l~~~L~~--vii~vvkslKNlRS~VsraA~~t~~difs~ln 161 (334)
T KOG2933|consen 86 PEAALKQALKKLSSDD--WEDKVDGLNSIRRLSEFHPESLNPMLHE--VIIAVVKSLKNLRSAVSRAACMTLADIFSSLN 161 (334)
T ss_pred HHHHHHHHHHHhchHH--HHHHhhhHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888764 467888888888766432 22334443 366777888999999999999999999986 3
Q ss_pred hHhHHHHHHcCcHHHHH-Hhhc---CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015709 206 PLVQKQVLELGALSKLM-KMVK---SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAV 281 (402)
Q Consensus 206 p~~Q~~~le~g~L~~Ll-~LL~---s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~ 281 (402)
..+++ .+..++ .|+. .++..++..|--||-+|+.+-.++. .++.|..+++.. ..+++++++
T Consensus 162 ~~i~~------~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~-------~L~~L~~~~~~~--n~r~r~~a~ 226 (334)
T KOG2933|consen 162 NSIDQ------ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK-------LLRKLIPILQHS--NPRVRAKAA 226 (334)
T ss_pred HHHHH------HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH-------HHHHHHHHHhhh--chhhhhhhh
Confidence 33333 233333 2333 2345689999999999998754422 234556666654 577888887
Q ss_pred HHHHHHh
Q 015709 282 SLVGDLA 288 (402)
Q Consensus 282 ~lL~~L~ 288 (402)
....+..
T Consensus 227 ~~~~~~v 233 (334)
T KOG2933|consen 227 LCFSRCV 233 (334)
T ss_pred ccccccc
Confidence 6666543
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.63 E-value=22 Score=40.67 Aligned_cols=112 Identities=14% Similarity=0.102 Sum_probs=68.9
Q ss_pred CcHHHHHHhhc------CCCHHH--HHHHHHHHHHHh---cCChh---cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015709 216 GALSKLMKMVK------SSFVEE--AVKALYTVSSLI---RNNLA---GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAV 281 (402)
Q Consensus 216 g~L~~Ll~LL~------s~~~~v--r~kAl~ALS~Li---R~~~~---~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~ 281 (402)
|.++.+++++. .+.... +.-|+.++|+++ ....+ ..+.|+ +..+...++++. --+|.|||
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~fl----v~hVfP~f~s~~--g~Lrarac 483 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFL----VNHVFPEFQSPY--GYLRARAC 483 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHH----HHHhhHhhcCch--hHHHHHHH
Confidence 56777788887 222223 334666666654 33332 233333 344455567763 34899999
Q ss_pred HHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhc-CCChHHHHHHHHHHHHHhcCChh
Q 015709 282 SLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA-SADLDLQEKALAAIKNLLQLRTT 340 (402)
Q Consensus 282 ~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~-~~d~dv~E~aL~aL~~L~~~~~~ 340 (402)
|.++.++.. +-.....+ ..+++...++|. +.+..|+-.|+.||..+..+.+.
T Consensus 484 ~vl~~~~~~-----df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~ 536 (1010)
T KOG1991|consen 484 WVLSQFSSI-----DFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQ 536 (1010)
T ss_pred HHHHHHHhc-----cCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchh
Confidence 999999842 21222222 345666677777 56888999999999999987543
|
|
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=82.44 E-value=7 Score=34.00 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHH
Q 015709 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 314 (402)
Q Consensus 235 kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~ 314 (402)
..+-.|+-+++..+.+... ++..|..=|+++ ++.++..|+.++-.++.+ ....+...+.+.+++..|+.
T Consensus 19 ~~~l~icD~i~~~~~~~k~-----a~r~l~krl~~~--n~~v~l~AL~lLe~~vkN----cg~~f~~ev~s~~fl~~L~~ 87 (133)
T smart00288 19 ELILEICDLINSTPDGPKD-----AVRLLKKRLNNK--NPHVALLALTLLDACVKN----CGSKFHLEVASKEFLNELVK 87 (133)
T ss_pred HHHHHHHHHHhCCCccHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHHH----CCHHHHHHHHhHHHHHHHHH
Confidence 4455667777776543332 455677778875 688999999999998863 45566677788899999999
Q ss_pred hhcCC-ChH-HHHHHHHHHHHHh
Q 015709 315 LTASA-DLD-LQEKALAAIKNLL 335 (402)
Q Consensus 315 lL~~~-d~d-v~E~aL~aL~~L~ 335 (402)
++... +.. ++++++..+..-.
T Consensus 88 l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 88 LIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHcCCCCcHHHHHHHHHHHHHHH
Confidence 98876 334 9999998887765
|
Unpublished observations. Domain of unknown function. |
| >cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein | Back alignment and domain information |
|---|
Probab=82.32 E-value=22 Score=31.28 Aligned_cols=72 Identities=14% Similarity=0.112 Sum_probs=54.0
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHH-HHHhhcCC---CHHHHHHHHHHHHHHhcCC
Q 015709 176 LSVLVGQLN-HPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSK-LMKMVKSS---FVEEAVKALYTVSSLIRNN 247 (402)
Q Consensus 176 l~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~-Ll~LL~s~---~~~vr~kAl~ALS~LiR~~ 247 (402)
+..|-.=|+ +.++.++..|..+|-++++|. +..+..|...+.+.. |+++++.. +..|+.+.+.-|-+-...+
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 344444455 468999999999999999997 468888888899987 99999742 3477888777776655443
|
The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways. |
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=82.15 E-value=4.7 Score=37.10 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=57.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcC---ChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQN---NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 250 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN---Np~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~ 250 (402)
|+.++++.-+++..+|..|..+|+.+.+. ||. -.+|.|+.|..++++.++.+|...+..+...++.-
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 56778888899999999999999999874 663 36899999999989999999999999998877753
|
|
| >PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes | Back alignment and domain information |
|---|
Probab=81.74 E-value=11 Score=36.29 Aligned_cols=178 Identities=16% Similarity=0.137 Sum_probs=99.0
Q ss_pred cCCCCHHHHHHhHHHHHHHHHHcCCCC-----HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCC-
Q 015709 102 VQRLSPSELKKRQMEIKELMEKLKTPS-----DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGG- 175 (402)
Q Consensus 102 ~~~~s~e~l~~r~~~L~ea~~~l~~~~-----d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGg- 175 (402)
..+++++++ ..|+..++.+..++ .......+...+.. .+.+.+..++|-++-++-+...+..+...++
T Consensus 33 ~~~l~~~el----~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~ 106 (268)
T PF08324_consen 33 ELKLSEEEL----ESLESLLSALKSTSAYHSDLSAWLILLLKILLS--WPPESRFPALDLLRLAALHPPASDLLASEDSG 106 (268)
T ss_dssp CT-S-HHHH----HHHHHHHCCCCCC-SS---HHHHHHHHHHHHCC--S-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH
T ss_pred ccCCCHHHH----HHHHHHHHHhcCCCccccchhHHHHHHHHHHHh--CCCccchhHHhHHHHHHhCccHHHHHhccccc
Confidence 457888765 34666666554322 12233333444333 3446789999999998887777766666542
Q ss_pred -HHHHHHhc----CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC--cHHHHHHhhcCC----CHHHHHHH---HHHHH
Q 015709 176 -LSVLVGQL----NHPDTDIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMVKSS----FVEEAVKA---LYTVS 241 (402)
Q Consensus 176 -l~~Li~lL----~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g--~L~~Ll~LL~s~----~~~vr~kA---l~ALS 241 (402)
...+..++ .+..+..+..++++++|+..+.+ .+..++.+. .+...+..+.+. +..++..+ ++-+|
T Consensus 107 ~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nls 185 (268)
T PF08324_consen 107 IADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLS 185 (268)
T ss_dssp -HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 33444333 23678999999999999998644 556666543 344444444443 34555443 33344
Q ss_pred HHhcCChh-cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 242 SLIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 242 ~LiR~~~~-~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
......+. .... ..-+..+.+.+.....+....-+++-++++|+.
T Consensus 186 v~~~~~~~~~~~~---~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~ 231 (268)
T PF08324_consen 186 VLLHKNRSDEEWQ---SELLSSIIEVLSREESDEEALYRLLVALGTLLS 231 (268)
T ss_dssp HHHHHCTS-CCHH---HHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCChHHH---HHHHHHHHHHhccccCCHHHHHHHHHHHHHHhc
Confidence 43333331 1011 112344445333332356688899999999984
|
It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A. |
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=81.64 E-value=21 Score=34.89 Aligned_cols=143 Identities=17% Similarity=0.124 Sum_probs=82.2
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015709 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS--SFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (402)
Q Consensus 179 Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s--~~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 256 (402)
|=.+|+++++.+|..|..+|+.+..+-|... +...-+..|+..+.+ ++.....-++.++..+++...-. .
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~-----~ 75 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFS-----P 75 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCC-----h
Confidence 4468899999999999999999998866321 222234555554443 12223333366666666432211 1
Q ss_pred cCcHHHHHHhhcCC---CccHHHHHHHHHHHHHHhhcccccCCCCcchhHH--hCCcHHHHHHhhcCC-ChHHHHHHHHH
Q 015709 257 EAGDLMLQDILGNS---SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR--DRFFLKSVVDLTASA-DLDLQEKALAA 330 (402)
Q Consensus 257 ~gGi~~L~~lL~s~---~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~--~~g~v~~Lv~lL~~~-d~dv~E~aL~a 330 (402)
..+..++..+.+.- ......|..+-.++..|..+ ....+. ..+++..++++...+ ||...-.+-..
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--------~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l 147 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--------HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKL 147 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--------hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 11334444444321 12344566777777777642 122232 246777888887765 88877777766
Q ss_pred HHHHhcC
Q 015709 331 IKNLLQL 337 (402)
Q Consensus 331 L~~L~~~ 337 (402)
+..+...
T Consensus 148 ~~~i~~~ 154 (262)
T PF14500_consen 148 LKVILQE 154 (262)
T ss_pred HHHHHHh
Confidence 6665443
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.24 E-value=37 Score=39.28 Aligned_cols=141 Identities=16% Similarity=0.106 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc---HHHHHh--cCc
Q 015709 185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG---QEMFYV--EAG 259 (402)
Q Consensus 185 s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~---~~~f~~--~gG 259 (402)
|=++.+|+.|+++|..++.-.|+ .+..+.+|+|++...+.+...|.-+.-|.+.++-+.... ...+.+ ..|
T Consensus 555 HWd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~ 630 (1133)
T KOG1943|consen 555 HWDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAG 630 (1133)
T ss_pred cccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhh
Confidence 45799999999999999987665 344578999999998888887776666666655442211 111211 123
Q ss_pred HHHHHHh-----hcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 260 DLMLQDI-----LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 260 i~~L~~l-----L~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
+.-++.- ++-+ ....++.-.+.++..+.. ........+.-.+|-..+.+.+..++ .+|+.+..++..+
T Consensus 631 l~~ii~~~~~~~~~rg-~~~lmr~~~~~~Ie~~s~-----s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l 703 (1133)
T KOG1943|consen 631 LLSIIPPICDRYFYRG-QGTLMRQATLKFIEQLSL-----SKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDL 703 (1133)
T ss_pred hhhhccHHHHHHhccc-hHHHHHHHHHHHHHHhhh-----ccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHH
Confidence 2111111 1111 112234444445554432 23344445556677777777775555 6778888877777
Q ss_pred hc
Q 015709 335 LQ 336 (402)
Q Consensus 335 ~~ 336 (402)
.+
T Consensus 704 ~s 705 (1133)
T KOG1943|consen 704 VS 705 (1133)
T ss_pred HH
Confidence 54
|
|
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=81.23 E-value=53 Score=33.46 Aligned_cols=83 Identities=13% Similarity=0.176 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHH-HHHHHHHHHHHHhcCChhcHHHHHhcCcHHHH
Q 015709 185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE-EAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 263 (402)
Q Consensus 185 s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~-vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L 263 (402)
+....+|..++--|++-+. +|..+..|..+|...++++.+...... .-.-+..++--++.........+...+-..++
T Consensus 33 ~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll 111 (361)
T PF07814_consen 33 SSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLLDRDSLRLL 111 (361)
T ss_pred CCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhhchhHHHHH
Confidence 3466789888888888887 688999999999999999999654432 32222223333333333444455555666676
Q ss_pred HHhhc
Q 015709 264 QDILG 268 (402)
Q Consensus 264 ~~lL~ 268 (402)
..++.
T Consensus 112 ~~Ll~ 116 (361)
T PF07814_consen 112 LKLLK 116 (361)
T ss_pred HHHhc
Confidence 77776
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.24 E-value=64 Score=31.85 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=86.4
Q ss_pred CCHHHHHHhcC--CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-----
Q 015709 174 GGLSVLVGQLN--HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN----- 246 (402)
Q Consensus 174 Ggl~~Li~lL~--s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~----- 246 (402)
..+++|+..|. +..|-||-.|+.++|.+.. | ..++.|-++.++...+++.....||-.+-..
T Consensus 67 ~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~ 135 (289)
T KOG0567|consen 67 DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDK 135 (289)
T ss_pred hhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccc
Confidence 35788888764 5679999999999999983 2 2344444445333334443333333222111
Q ss_pred ----------ChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc----c-c--cCCCCc--------ch
Q 015709 247 ----------NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ----L-E--NMHKVE--------PP 301 (402)
Q Consensus 247 ----------~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~----l-~--~~~~~~--------~~ 301 (402)
+|... ...+-+.-|...|.+.+...--|.+|+|.|.|+-.+. + + ..++.. .-
T Consensus 136 ~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfG 212 (289)
T KOG0567|consen 136 IANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFG 212 (289)
T ss_pred ccccCccccCCCCCc---cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 11111 1122344444444433222334556666666652110 0 0 000000 01
Q ss_pred hHHhCCcHHHHHHhhcC--CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHH
Q 015709 302 LFRDRFFLKSVVDLTAS--ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDT 353 (402)
Q Consensus 302 ~l~~~g~v~~Lv~lL~~--~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~ 353 (402)
.+++.-.++.|.+.|.. .++-+|.-|+.||..++.. +|..++....|=+.
T Consensus 213 Ql~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e--~~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 213 QLQSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE--DCVEVLKEYLGDEE 264 (289)
T ss_pred hccchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH--HHHHHHHHHcCCcH
Confidence 12234557778877754 4788999999999999864 58777775555433
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=80.06 E-value=21 Score=32.07 Aligned_cols=114 Identities=15% Similarity=0.110 Sum_probs=79.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc--HHHHHHhhcCCCccHHHHHHHHHHHHHHhhccccc
Q 015709 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (402)
Q Consensus 217 ~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG--i~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~ 294 (402)
...++..++++.++..|-.++.-+..++..++ .+.|.++++ +..|..+|+.+ .+..++.-++..+..|.... .
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~-~~~~~~~~ai~~L~~l~~~~--~ 100 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKP-DPPSVLEAAIITLTRLFDLI--R 100 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHh--c
Confidence 45678899999888888889988888888764 355655553 36677778876 46778889999999988642 1
Q ss_pred CCCCcchhHHh---CCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 295 MHKVEPPLFRD---RFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 295 ~~~~~~~~l~~---~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
..++....+.. .++++.++.++.. ..+.+.++.+|..+...
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 22332222222 2455556666554 67889999999998874
|
|
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=80.04 E-value=5.5 Score=35.34 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHh
Q 015709 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL 315 (402)
Q Consensus 236 Al~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~l 315 (402)
.+-.|+-+++..+.+.. ..+..|..=|.++ ++.++..|+.++-.++. +.+..+...+.+..++..|+.+
T Consensus 20 ~il~icD~I~~~~~~~k-----~a~ral~KRl~~~--n~~v~l~AL~LLe~~vk----NCG~~fh~evask~Fl~eL~kl 88 (144)
T cd03568 20 LILDVCDKVKSDENGAK-----DCLKAIMKRLNHK--DPNVQLRALTLLDACAE----NCGKRFHQEVASRDFTQELKKL 88 (144)
T ss_pred HHHHHHHHHhcCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HCCHHHHHHHhhHHHHHHHHHH
Confidence 34455656655433222 3455666667765 68899999999999886 3556677778889999999999
Q ss_pred hcC-CChHHHHHHHHHHHHHhc
Q 015709 316 TAS-ADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 316 L~~-~d~dv~E~aL~aL~~L~~ 336 (402)
+.. .+..++++++..+...+.
T Consensus 89 ~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 89 INDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred hcccCCHHHHHHHHHHHHHHHH
Confidence 988 699999999998887753
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 4e-37
Identities = 62/263 (23%), Positives = 113/263 (42%), Gaps = 16/263 (6%)
Query: 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGG 175
++K + L P ++ + AL+ L L E +DNA D +L G
Sbjct: 29 QMKSCLRVLSQPMPP------TAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSG 82
Query: 176 LSVLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA- 233
+ +LVG+ L +R +A ++G SQN +Q+QVL LGAL KL++++ +
Sbjct: 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 142
Query: 234 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 293
VKAL+ +S L+R AG F G +L + +++ K+ L+ +L E
Sbjct: 143 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLK--VKSAFLLQNLLVGHPE 200
Query: 294 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ-LRTTEALVLKDFCGLD 352
+ + ++ +V L + E L A+ +L+ + GL+
Sbjct: 201 HKGTL-----CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLE 255
Query: 353 TALERLRQQLQEVMLEEDQRDYA 375
L Q LQ+ +++ ++
Sbjct: 256 ELLRHRCQLLQQHEEYQEELEFC 278
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 3e-12
Identities = 42/191 (21%), Positives = 87/191 (45%), Gaps = 16/191 (8%)
Query: 151 QRALQEL-LILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 209
A ++ IL + + + G L LV L+ P+ I + + W L +
Sbjct: 30 LSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89
Query: 210 KQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQD 265
+ V++ GAL L++++ S ++EA+ AL ++S + ++AG L L
Sbjct: 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ----AVIDAGALPALVQ 145
Query: 266 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQE 325
+L + + +I ++A+ + ++A E + V D L ++V L +S + + +
Sbjct: 146 LLSSPNEQIL--QEALWALSNIASGGNEQIQAV-----IDAGALPALVQLLSSPNEQILQ 198
Query: 326 KALAAIKNLLQ 336
+AL A+ N+
Sbjct: 199 EALWALSNIAS 209
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 34/171 (19%), Positives = 78/171 (45%), Gaps = 9/171 (5%)
Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
+ + G L LV L+ P+ I + + W L + + V++ GAL L+++
Sbjct: 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146
Query: 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSL 283
+ S + +AL+ +S++ + ++AG L L +L + + +I ++A+
Sbjct: 147 LSSPNEQILQEALWALSNIASGGNEQIQAV-IDAGALPALVQLLSSPNEQIL--QEALWA 203
Query: 284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334
+ ++A E V+ + L+ + L + + +Q++A A++ L
Sbjct: 204 LSNIASGGNEQKQAVK-----EAGALEKLEQLQSHENEKIQKEAQEALEKL 249
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 36/178 (20%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 166 NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225
+ + L + QLN D + + + + + V++ GAL L++++
Sbjct: 4 SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63
Query: 226 KS---SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAV 281
S ++EA+ AL ++S Q ++AG L L +L + + +I ++A+
Sbjct: 64 SSPNEQILQEALWALSNIAS----GGNEQIQAVIDAGALPALVQLLSSPNEQIL--QEAL 117
Query: 282 SLVGDLAKCQLENMHKVE-----PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334
+ ++A E + V P L V L +S + + ++AL A+ N+
Sbjct: 118 WALSNIASGGNEQIQAVIDAGALPAL----------VQLLSSPNEQILQEALWALSNI 165
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 6e-05
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
+ + G L LV L+ P+ I + + W L + ++ V E GAL KL ++
Sbjct: 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 230
Query: 225 VKS---SFVEEAVKALYTVSS 242
+EA +AL + S
Sbjct: 231 QSHENEKIQKEAQEALEKLQS 251
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 33/206 (16%), Positives = 72/206 (34%), Gaps = 8/206 (3%)
Query: 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT 188
Q++ + + N+ +E ++ L L + + K GG+ LV L P
Sbjct: 57 SPQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD 115
Query: 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 248
+ + L + + V G L K++ ++ + V+ + L N
Sbjct: 116 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175
Query: 249 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF 308
+ + G L +I+ ++E L ++ L+ C N P +
Sbjct: 176 ESKLIILASGGPQALVNIMRTYTYEK-LLWTTSRVLKVLSVCS-SN-----KPAIVEAGG 228
Query: 309 LKSVVDLTASADLDLQEKALAAIKNL 334
++++ L + L ++NL
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNL 254
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 28/179 (15%), Positives = 65/179 (36%), Gaps = 15/179 (8%)
Query: 74 GGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQME----IKELMEKLKTPSD 129
G + +L S +K T ++ L+ + I L++ L
Sbjct: 355 YGLPVVVKLLH---PPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ 411
Query: 130 AQLIQIAIDDLNNSTLSLEDSQRALQE----LLILVEPIDNANDLSKLGGLSVLVGQLNH 185
+ ++ + + ++ L IL + N + L + + V L
Sbjct: 412 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYS 471
Query: 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVS 241
P +I++++A +L + +Q + + + GA + L +++ S A L+ +S
Sbjct: 472 PIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 37/190 (19%), Positives = 68/190 (35%), Gaps = 12/190 (6%)
Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
G L LV L D ++ +A IL + NN + V ++G + L++
Sbjct: 257 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 316
Query: 225 VKSS-----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK 279
V + E A+ AL ++S + Q + G ++ +L S +
Sbjct: 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK-A 375
Query: 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339
V L+ +LA C N + R++ + +V L A D Q + +
Sbjct: 376 TVGLIRNLALCP-ANHAPL-----REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 429
Query: 340 TEALVLKDFC 349
+ + C
Sbjct: 430 VRMEEIVEGC 439
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 23/175 (13%), Positives = 60/175 (34%), Gaps = 17/175 (9%)
Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
+ + L LN D + +A ++ + S+ + +S +++
Sbjct: 8 YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 67
Query: 225 VKSS----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRK 279
++++ L+ +S + G ++G + L +LG+ + +
Sbjct: 68 MQNTNDVETARCTAGTLHNLSH----HREGLLAI-FKSGGIPALVKMLGSPVDSVLFY-- 120
Query: 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334
A++ + +L Q V R L+ +V L ++ ++ L
Sbjct: 121 AITTLHNLLLHQEGAKMAV-----RLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 8e-06
Identities = 41/280 (14%), Positives = 87/280 (31%), Gaps = 58/280 (20%)
Query: 87 IGHSDPAKLKETAQDVQRLSPSELKKRQMEIKE-----LMEKLKTPSDAQLIQI-AIDDL 140
+G D + A + L+ + K + M + L+ + D + I AI L
Sbjct: 275 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334
Query: 141 NNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGK 200
+ T ++++ A + GL V+V L+ P + L +
Sbjct: 335 RHLTSRHQEAEMAQNAVR-------------LHYGLPVVVKLLHPPSHWPLIKATVGLIR 381
Query: 201 ASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 260
P + E GA+ +L++++ + + + + E
Sbjct: 382 NLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG 441
Query: 261 LM---------------------LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE 299
+ +L + I+ R A ++ +LA+ + E +E
Sbjct: 442 ALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQ--RVAAGVLCELAQDK-EAAEAIE 498
Query: 300 -----PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334
PL +L S + + A A + +
Sbjct: 499 AEGATAPL----------TELLHSRNEGVATYAAAVLFRM 528
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 9e-12
Identities = 33/206 (16%), Positives = 72/206 (34%), Gaps = 8/206 (3%)
Query: 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT 188
Q++ + + N+ +E ++ L L + + K GG+ LV L P
Sbjct: 54 SPQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD 112
Query: 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 248
+ + L + + V G L K++ ++ + V+ + L N
Sbjct: 113 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 172
Query: 249 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF 308
+ + G L +I+ ++E L ++ L+ C N P +
Sbjct: 173 ESKLIILASGGPQALVNIMRTYTYEK-LLWTTSRVLKVLSVCS-SN-----KPAIVEAGG 225
Query: 309 LKSVVDLTASADLDLQEKALAAIKNL 334
++++ L + L ++NL
Sbjct: 226 MQALGLHLTDPSQRLVQNCLWTLRNL 251
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 2e-09
Identities = 37/190 (19%), Positives = 68/190 (35%), Gaps = 12/190 (6%)
Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
G L LV L D ++ +A IL + NN + V ++G + L++
Sbjct: 254 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 313
Query: 225 VKSS-----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK 279
V + E A+ AL ++S + Q + G ++ +L S +
Sbjct: 314 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK-A 372
Query: 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339
V L+ +LA C N + R++ + +V L A D Q + +
Sbjct: 373 TVGLIRNLALCP-ANHAPL-----REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 426
Query: 340 TEALVLKDFC 349
+ + C
Sbjct: 427 VRMEEIVEGC 436
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 2e-06
Identities = 22/175 (12%), Positives = 60/175 (34%), Gaps = 17/175 (9%)
Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
+ + L LN D + +A ++ + S+ + +S +++
Sbjct: 5 YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64
Query: 225 VKSS----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRK 279
++++ L+ +S ++ G ++G + L +LG+ + +
Sbjct: 65 MQNTNDVETARCTAGTLHNLS----HHREGLLAI-FKSGGIPALVKMLGSPVDSVLFY-- 117
Query: 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334
A++ + +L Q R L+ +V L ++ ++ L
Sbjct: 118 AITTLHNLLLHQEGA-----KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 3e-04
Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 16/159 (10%)
Query: 95 LKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRAL 154
L QD QR + ++Q ME++ L +A D N + ++
Sbjct: 403 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 462
Query: 155 QELL----------------ILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWIL 198
+LL L + + A + G + L L+ + + +A +L
Sbjct: 463 VQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 522
Query: 199 GKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKAL 237
+ S++ P K+ L + S L + ++ E A L
Sbjct: 523 FRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGL 561
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 4e-04
Identities = 33/242 (13%), Positives = 80/242 (33%), Gaps = 51/242 (21%)
Query: 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGL 176
+ +++ L PS LI+ + + N L+L + A L + G +
Sbjct: 354 LPVVVKLLHPPSHWPLIKATVGLIRN--LALCPANHAP---------------LREQGAI 396
Query: 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE---------------------L 215
LV L D ++ ++ + + ++++E L
Sbjct: 397 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL 456
Query: 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEI 274
+ ++++ S A + L ++ A + + G L ++L + + +
Sbjct: 457 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI--EAEGATAPLTELLHSRNEGV 514
Query: 275 RLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334
A ++ L M + +P ++ R ++ L + + E A +
Sbjct: 515 A--TYAAAV--------LFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGLDIG 564
Query: 335 LQ 336
Q
Sbjct: 565 AQ 566
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 5e-11
Identities = 33/206 (16%), Positives = 72/206 (34%), Gaps = 8/206 (3%)
Query: 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT 188
Q++ + + N+ +E ++ L L + + K GG+ LV L P
Sbjct: 190 SPQMVSAIVRTMQNTN-DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD 248
Query: 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 248
+ + L + + V G L K++ ++ + V+ + L N
Sbjct: 249 SVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 308
Query: 249 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF 308
+ + G L +I+ ++E L ++ L+ C N P +
Sbjct: 309 ESKLIILASGGPQALVNIMRTYTYEK-LLWTTSRVLKVLSVCS-SN-----KPAIVEAGG 361
Query: 309 LKSVVDLTASADLDLQEKALAAIKNL 334
++++ L + L ++NL
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWTLRNL 387
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 2e-08
Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 12/178 (6%)
Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
G L LV L D ++ +A IL + NN + V ++G + L++
Sbjct: 390 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 449
Query: 225 VKSS-----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK 279
V + E A+ AL ++S ++ Q + G ++ +L S +
Sbjct: 450 VLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA- 508
Query: 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337
V L+ +LA C N + R++ + +V L A D Q + +
Sbjct: 509 TVGLIRNLALCP-ANHAPL-----REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 560
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 3e-07
Identities = 36/306 (11%), Positives = 95/306 (31%), Gaps = 19/306 (6%)
Query: 71 ELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQ--RLSPSELKKRQMEIKELMEKLKTPS 128
L G + D + + + ++ Q + R ++ M
Sbjct: 45 SLSGKGNPEDDDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQRVRAAMFPETLDE 104
Query: 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT 188
Q+ D + + + + + ++ + + L LN D
Sbjct: 105 GMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQ 164
Query: 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF----VEEAVKALYTVSSLI 244
+ +A ++ + S+ + +S +++ ++++ L+ +S
Sbjct: 165 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-- 222
Query: 245 RNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 303
+ G ++G + L ++LG+ + H A++ + +L Q
Sbjct: 223 --HREGLLAI-FKSGGIPALVNMLGSPVDSVLFH--AITTLHNLLLHQEGA-----KMAV 272
Query: 304 RDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQ 363
R L+ +V L ++ ++ L L++ G + +R
Sbjct: 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 332
Query: 364 EVMLEE 369
E +L
Sbjct: 333 EKLLWT 338
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 30/196 (15%), Positives = 63/196 (32%), Gaps = 39/196 (19%)
Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
N + GL V+V L+ P + L + P + E GA+ +L+++
Sbjct: 479 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 538
Query: 225 VKSSFVEEAVKALYTVSSL-----------------IRNNLAGQEMFYVEAGDL----ML 263
+ + + + + + LA + L +
Sbjct: 539 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLF 598
Query: 264 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-----PPLFRDRFFLKSVVDLTAS 318
+L + I+ R A ++ +LA+ + E +E PL +L S
Sbjct: 599 VQLLYSPIENIQ--RVAAGVLCELAQDK-EAAEAIEAEGATAPL----------TELLHS 645
Query: 319 ADLDLQEKALAAIKNL 334
+ + A A + +
Sbjct: 646 RNEGVATYAAAVLFRM 661
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 7e-11
Identities = 42/191 (21%), Positives = 85/191 (44%), Gaps = 20/191 (10%)
Query: 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA 233
L +V QLN PD + + L + + + V++ GAL L++++ S +
Sbjct: 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 234 VKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 292
+AL+ +S++ Q ++AG L L +L + + +I ++A+ + ++A
Sbjct: 72 QEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQIL--QEALWALSNIASGGN 128
Query: 293 ENMHKVE-----PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKD 347
E + V P L V L +S + + ++AL A+ N+ + +K+
Sbjct: 129 EQIQAVIDAGALPAL----------VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE 178
Query: 348 FCGLDTALERL 358
L+ LE+L
Sbjct: 179 AGALE-KLEQL 188
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 2e-09
Identities = 39/189 (20%), Positives = 81/189 (42%), Gaps = 20/189 (10%)
Query: 153 ALQEL-LILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211
AL++L I + + G L LV L+ P+ I + + W L + +
Sbjct: 32 ALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91
Query: 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNS 270
V++ GAL L++++ S + +AL+ +S++ Q ++AG L L +L +
Sbjct: 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QIQAVIDAGALPALVQLLSSP 150
Query: 271 SFEIRLHRKAVSLVGDLAKCQLENMHKVE-----PPLFRDRFFLKSVVDLTASADLDLQE 325
+ +I ++A+ + ++A E V+ L L + + +Q+
Sbjct: 151 NEQIL--QEALWALSNIASGGNEQKQAVKEAGALEKL----------EQLQSHENEKIQK 198
Query: 326 KALAAIKNL 334
+A A++ L
Sbjct: 199 EAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 159 ILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 218
I + + G L LV L+ P+ I + + W L + ++ V E GAL
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 182
Query: 219 SKLMKMVKSS---FVEEAVKALYTVSS 242
KL ++ +EA +AL + S
Sbjct: 183 EKLEQLQSHENEKIQKEAQEALEKLQS 209
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 37/220 (16%), Positives = 81/220 (36%), Gaps = 24/220 (10%)
Query: 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGL 176
+ +E LK + L + L N R + + G +
Sbjct: 66 VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQA----------------GAV 109
Query: 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVK 235
+ + L+ D+++ + W LG + ++ + + VL+ L L+++ + +
Sbjct: 110 PIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRN 169
Query: 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295
A++ +S+L R E V +L +L S ++ A + L+ + +
Sbjct: 170 AVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLAD--ACWALSYLSDGPNDKI 227
Query: 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335
V D + +V+L D + AL A+ N++
Sbjct: 228 QAV-----IDAGVCRRLVELLMHNDYKVVSPALRAVGNIV 262
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 2e-10
Identities = 35/179 (19%), Positives = 67/179 (37%), Gaps = 6/179 (3%)
Query: 159 ILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 218
+ P D + G LV L H D + + +G + + + +L AL
Sbjct: 219 LSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSAL 278
Query: 219 SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHR 278
L+ ++ S +A +T+S++ N A + L IL + F R +
Sbjct: 279 QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTR--K 336
Query: 279 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337
+A + + K + +K + DL D + + AL ++N+L+L
Sbjct: 337 EAAWAITNATSGGSAEQIK----YLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 6e-10
Identities = 70/449 (15%), Positives = 146/449 (32%), Gaps = 123/449 (27%)
Query: 27 RAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSS-IDGMLQW 85
+ +V +FW K ++ + ++D ++S D
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNS--------PETVLEMLQKLLYQIDPNWTSRSDHSS-- 221
Query: 86 AIGHSDPAKLKETAQDVQRLSPSELKKRQMEI------KELMEK-------LKTPSDAQL 132
+ ++ +++RL S+ + + + + L T Q+
Sbjct: 222 ----NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 133 IQIAIDDLNNST---LSLEDSQRAL-----QELLILVEPIDNANDLSK--LGG----LSV 178
D L+ +T +SL+ L + LL+ DL + L LS+
Sbjct: 278 ----TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-PQDLPREVLTTNPRRLSI 332
Query: 179 LVGQL-NHPDT-------DIRKISAWILGKASQNN--PLVQKQVLELGAL--------SK 220
+ + + T + K++ I ++S N P +++ + ++ +
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTII--ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 221 LMKMV----KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRL 276
L+ ++ S V V L+ S + + + + + L ++ E L
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP----KESTISIPSIYL-ELKVKLENEYAL 445
Query: 277 HRKAVSLV--------GDLAKCQLEN---------MHKVEP----PLFRDRF----FLKS 311
HR V DL L+ + +E LFR F FL+
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 312 VVDLTASADLDLQEKALAAIKNLLQ-LR-----------TTEALV--LKDF---CGLDTA 354
+ ++A A +I N LQ L+ E LV + DF +
Sbjct: 506 KIRHDSTA-----WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 355 LERLRQQLQEVMLEEDQRDYAMDVEALRR 383
+ L+ ++ ED+ + + ++R
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 4e-05
Identities = 52/440 (11%), Positives = 114/440 (25%), Gaps = 139/440 (31%)
Query: 39 LFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIGHSDPAKLKET 98
LFW+ + V + ++ F M P+ +
Sbjct: 67 LFWTL-----------LSKQEEMVQKFVEEVLRINYKFL----MSPIKTEQRQPSMMTRM 111
Query: 99 -AQDVQRL--SPSELKKRQMEIKELMEKLKTP----SDAQLIQI-----------AIDDL 140
+ RL K + + KL+ A+ + I A+D
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 141 NNS-------------TLSLEDSQRA----LQELLILVEP------------IDNANDLS 171
+ L +S LQ+LL ++P + +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 172 KLGGLSVLVGQLNHPDT-----DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 226
L L+ + + +++ +A L K++ +
Sbjct: 232 A--ELRRLLKSKPYENCLLVLLNVQ--NAKAW------------NAFNLS--CKILLTTR 273
Query: 227 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIR-----LHRKAV 281
V + + A T + ++ + +L L ++ + + +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 282 SLVGDLAK---CQLENMHKV----------------EPPLFRDRF-----FLKSVVDLTA 317
S++ + + +N V EP +R F F S +
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-AHIPT 389
Query: 318 S------ADLDLQEKALAAIKNLLQLRTTEALVLKDFCG---------LDTALERL-RQQ 361
D+ + + + N L + LV K L+ ++
Sbjct: 390 ILLSLIWFDVIKSDVMV--VVNKLHKYS---LVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 362 LQEVMLEEDQRDYAMDVEAL 381
L +++ D + L
Sbjct: 445 LHRSIVDHYNIPKTFDSDDL 464
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 1e-04
Identities = 56/362 (15%), Positives = 111/362 (30%), Gaps = 113/362 (31%)
Query: 15 LLVL------------------LMITMAIGRAERVNNSS-----------------SAGL 39
LLVL L+ T + ++ ++ L
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 40 FWSTAK----EDEDQPRKAERNDD---STAAAIVNDHDELDGGFSSIDGMLQWAIGHSDP 92
K +D PR+ + S A + D ++ D W H +
Sbjct: 307 L---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG------LATWD---NWK--HVNC 352
Query: 93 AKLKETAQ-DVQRLSPSELKKR--QMEI--------KELMEKLKTPSDAQLIQIAIDDLN 141
KL + + L P+E +K ++ + L+ + + + ++ L+
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 142 NSTLSLEDSQRALQEL----LILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWI 197
+L + + + + L L ++N L + +V N P + +
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-----SIVDHYNIP----KTFDSDD 463
Query: 198 LGKASQNNPLVQ------KQVLELGALSKLMKMV--KSSFVEEAVK----ALYTVSSLIR 245
L + K +E L +MV F+E+ ++ A S++
Sbjct: 464 LIPPYLDQYFYSHIGHHLKN-IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL- 521
Query: 246 NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305
N Q FY I N + + R LV + L+ + K+E L
Sbjct: 522 -NTLQQLKFY-------KPYICDN---DPKYER----LVNAI----LDFLPKIEENLICS 562
Query: 306 RF 307
++
Sbjct: 563 KY 564
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 8e-10
Identities = 51/300 (17%), Positives = 104/300 (34%), Gaps = 27/300 (9%)
Query: 44 AKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQ 103
AK + + D A+ + S++ +++ I ++ + Q +
Sbjct: 24 AKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVK-GINSNNLESQLQATQAAR 82
Query: 104 RLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLS--LEDSQRALQELLILV 161
+L E + I A LI + L + S +S AL I
Sbjct: 83 KLLSREKQPPIDNI----------IRAGLIPKFVSFLGKTDCSPIQFESAWALTN--IAS 130
Query: 162 EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 221
+ + G + + L P I + + W LG + + + V++ GA+ L
Sbjct: 131 GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPL 190
Query: 222 MKMVKSSFVEEAVK-----ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRL 276
+ ++ + +T+S+L RN + VE L +L ++ E+
Sbjct: 191 LALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 250
Query: 277 HRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336
+ + L E + V + + +V L + +L + AL AI N++
Sbjct: 251 D--SCWAISYLTDGPNERIEMV-----VKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 303
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 2e-09
Identities = 41/223 (18%), Positives = 89/223 (39%), Gaps = 8/223 (3%)
Query: 137 IDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL-GGLSVLVGQLNHPDTDIRKISA 195
+ + STL+ + L L + A L + L LV L+H D ++ S
Sbjct: 194 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 253
Query: 196 WILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255
W + + + V++ G + +L+K++ ++ + AL + +++ +
Sbjct: 254 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 313
Query: 256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL 315
+ +L N I+ ++A + ++ + + + +V + + +V +
Sbjct: 314 DAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV-----VNHGLVPFLVGV 366
Query: 316 TASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358
+ AD Q++A AI N T E +V CG+ L L
Sbjct: 367 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL 409
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 3e-08
Identities = 37/253 (14%), Positives = 99/253 (39%), Gaps = 20/253 (7%)
Query: 87 IGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLS 146
+ H+DP L ++ + L+ ++ +M + ++ + L + L
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVV-----------KKGVVPQLVKLLGATELP 289
Query: 147 L-EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN 205
+ + RA+ I+ + + G L+V L +P T+I+K + W + +
Sbjct: 290 IVTPALRAIGN--IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR 347
Query: 206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM-LQ 264
+QV+ G + L+ ++ + + +A + +++ Q ++ V G + L
Sbjct: 348 QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 407
Query: 265 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP--PLFRDRFFLKSVVDLTASADLD 322
++L +I + + + ++ + E + + E + + L + L +
Sbjct: 408 NLLSAKDTKII--QVILDAISNIFQAA-EKLGETEKLSIMIEECGGLDKIEALQRHENES 464
Query: 323 LQEKALAAIKNLL 335
+ + +L I+
Sbjct: 465 VYKASLNLIEKYF 477
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 9e-10
Identities = 33/179 (18%), Positives = 72/179 (40%), Gaps = 4/179 (2%)
Query: 159 ILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 218
+ P + + + LV L+H T ++ + +G N L + V+ G L
Sbjct: 284 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVL 343
Query: 219 SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHR 278
L ++ S +A +T+S++ N + ++A + L E + +
Sbjct: 344 PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAV-IDANLIPPLVKL-LEVAEYKTKK 401
Query: 279 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337
+A + + + L+ + + +K + DL AD + E L A++N+L++
Sbjct: 402 EACWAISNASSGGLQRPDIIR--YLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 3e-09
Identities = 28/172 (16%), Positives = 65/172 (37%), Gaps = 7/172 (4%)
Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
+ + + + L ++++ + W LG + ++ + VL+ A+ ++ +
Sbjct: 164 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 223
Query: 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV 284
S+ A +T+S+L R + V L ++ + E + A +
Sbjct: 224 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVD--ACWAI 281
Query: 285 GDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336
L+ E + D K +V+L + +Q AL A+ N++
Sbjct: 282 SYLSDGPQEAIQ-----AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 5e-07
Identities = 31/176 (17%), Positives = 66/176 (37%), Gaps = 19/176 (10%)
Query: 170 LSKLGGLSVLVGQLNHPDTDIRKISAWILGK-ASQNNPLVQKQVLELGALSKLMKMVKSS 228
S G + LV QL D++++ A +L + + + +K + E+G++ LM+
Sbjct: 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV 182
Query: 229 ----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-----MLQDILGNSSFEIRLHR- 278
++ + AL+ +S+ N + G L L ++ I
Sbjct: 183 KKESTLKSVLSALWNLSAHCTEN---KADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 239
Query: 279 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334
+ V L ++ + R+ L++++ S L + A + NL
Sbjct: 240 GILRNVSSLIATNEDHRQIL-----RENNCLQTLLQHLKSHSLTIVSNACGTLWNL 290
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 9e-07
Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Query: 130 AQLIQIAIDDLNNSTLS-LEDSQRALQELL-ILVEPIDNANDLSKLGGLSVLVGQLNHPD 187
A L+ +TL+ +E L+ + ++ D+ L + L L+ L
Sbjct: 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS 276
Query: 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 247
I + L S NP Q+ + ++GA+S L ++ S A+ + + +L+ N
Sbjct: 277 LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336
Query: 248 LA 249
A
Sbjct: 337 PA 338
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 38/224 (16%), Positives = 74/224 (33%), Gaps = 30/224 (13%)
Query: 128 SDAQLIQIAIDDLNNSTLSL-EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP 186
S ++ + L + + L + L+ L + ++ L ++G + L+
Sbjct: 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV-NSKKTLREVGSVKALMECALEV 182
Query: 187 -DTDIRKISAWILGKASQNNPLVQKQ-VLELGALSKLMKMVKSSF-------VEEAVKAL 237
K L S + + GAL+ L+ + +E L
Sbjct: 183 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL 242
Query: 238 YTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 296
VSSLI N +++ E L L L + S I A + +L+ ++
Sbjct: 243 RNVSSLIATNEDHRQIL-RENNCLQTLLQHLKSHSLTIV--SNACGTLWNLSARNPKDQE 299
Query: 297 KVE-----PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335
+ L +L S + + AA++NL+
Sbjct: 300 ALWDMGAVSML----------KNLIHSKHKMIAMGSAAALRNLM 333
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 28/211 (13%), Positives = 61/211 (28%), Gaps = 41/211 (19%)
Query: 150 SQRALQELLILVEPIDNANDLSKL-----GGLSVLVGQLNHPDTDIRKISAWILGKASQN 204
L +L + + G+ + P + +L K S
Sbjct: 3 HHHHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF- 61
Query: 205 NPLVQKQVLELGALSKLMKMVKSSF--------------VEEAVKALYTVSSLIRNNLAG 250
+ + + ELG L + ++++ A AL ++L ++A
Sbjct: 62 DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMAL---TNLTFGDVAN 118
Query: 251 QEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM------HKVEPPLF 303
+ G + L L + S ++ + S++ +L+ N L
Sbjct: 119 KATLCSMKGCMRALVAQLKSESEDL--QQVIASVLRNLSWRADVNSKKTLREVGSVKAL- 175
Query: 304 RDRFFLKSVVDLTASADLDLQEKALAAIKNL 334
+ + L+A+ NL
Sbjct: 176 --------MECALEVKKESTLKSVLSALWNL 198
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 2e-06
Identities = 24/168 (14%), Positives = 59/168 (35%), Gaps = 10/168 (5%)
Query: 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVK 235
+ V L+ D + I A+ + + ++QV +LG + KL+ +++S
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295
A + +L+ + + + G +L + + ++ L+ +L+
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKE 122
Query: 296 HKVE---PPLFR------DRFFLKSVVDLTASADLDLQEKALAAIKNL 334
+ P L + + D ++ A ++NL
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL 170
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 3e-06
Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
Query: 132 LIQIAIDDLNNSTLS-LEDSQRALQELL-ILVEPIDNANDLSKLGGLSVLVGQLNHPDTD 189
L+ +TL+ +E L+ + ++ D+ L + L L+ L
Sbjct: 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLT 394
Query: 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 247
I + L S NP Q+ + ++GA+S L ++ S A+ + + +L+ N
Sbjct: 395 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 3e-06
Identities = 32/171 (18%), Positives = 67/171 (39%), Gaps = 17/171 (9%)
Query: 174 GGLSVLVGQLNHPDTDIRKISAWILGK-ASQNNPLVQKQVLELGALSKLMKMVKSS---- 228
G + LV QL D++++ A +L + + + +K + E+G++ LM+
Sbjct: 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 302
Query: 229 FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK-----AVSL 283
++ + AL+ +S+ N A ++ V+ L L S L +
Sbjct: 303 TLKSVLSALWNLSAHCTENKA--DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 360
Query: 284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334
V L ++ + R+ L++++ S L + A + NL
Sbjct: 361 VSSLIATNEDHRQIL-----RENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 2e-05
Identities = 34/192 (17%), Positives = 62/192 (32%), Gaps = 28/192 (14%)
Query: 158 LILVEPIDNANDLSKLGGLSVLVGQLNHP-DTDIRKISAWILGKASQNNPLVQKQ-VLEL 215
L +++ L ++G + L+ K L S + +
Sbjct: 270 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVD 329
Query: 216 GALSKLMKMVKSSF-------VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDIL 267
GAL+ L+ + +E L VSSLI N +++ E L L L
Sbjct: 330 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL-RENNCLQTLLQHL 388
Query: 268 GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-----PPLFRDRFFLKSVVDLTASADLD 322
+ S I A + +L+ ++ + L +L S
Sbjct: 389 KSHSLTIV--SNACGTLWNLSARNPKDQEALWDMGAVSML----------KNLIHSKHKM 436
Query: 323 LQEKALAAIKNL 334
+ + AA++NL
Sbjct: 437 IAMGSAAALRNL 448
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 5e-06
Identities = 17/123 (13%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Query: 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLIL-VEPIDNANDLSKLGGLSVLVGQLNHPDT 188
++ A+ L + A + + + +++L G+ L+ L +
Sbjct: 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE 66
Query: 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS----FVEEAVKALYTVSSLI 244
D+++ L + + +V EL + +L++++K + ++ L+ +SS
Sbjct: 67 DVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126
Query: 245 RNN 247
+
Sbjct: 127 KLK 129
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 8e-06
Identities = 28/222 (12%), Positives = 68/222 (30%), Gaps = 16/222 (7%)
Query: 143 STLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGK-- 200
T S + + L + + + + GG+ L+ ++ + L +
Sbjct: 505 KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIG 564
Query: 201 ASQNNPLVQKQVLELGALSKLMKMVKSSF----VEEAVKALYTVSSLIRNNLAGQEMFYV 256
+ N + L + L+ +++ E++ AL ++S+ + ++
Sbjct: 565 ITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESV---RQRIIK 621
Query: 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT 316
E G ++ L + L R A + +L V + +K + L
Sbjct: 622 EQGVSKIEYYL--MEDHLYLTRAAAQCLCNLVMS-----EDVIKMFEGNNDRVKFLALLC 674
Query: 317 ASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358
D + A+ + + + L L
Sbjct: 675 EDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTL 716
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 44.2 bits (103), Expect = 6e-05
Identities = 21/153 (13%), Positives = 43/153 (28%), Gaps = 6/153 (3%)
Query: 142 NSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKA 201
L +R L + + L ++ L ++ +A L
Sbjct: 16 YYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHL 75
Query: 202 SQNNPLVQKQVLELGALSKLMKMVKSSFV---EEAVKALYTVSSLIRNNLAGQEMFYVEA 258
N V+ V +L + L+ ++ A AL +S + +
Sbjct: 76 CYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNIS--FGRDQDNKIAIKNCD 133
Query: 259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291
G L +L + L + +L+
Sbjct: 134 GVPALVRLLRKARDM-DLTEVITGTLWNLSSHD 165
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 7e-04
Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 4/120 (3%)
Query: 152 RALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211
+ L LL + P L G+S L+ L IR +L +++N +QK
Sbjct: 144 KLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKI 203
Query: 212 VLELGALSKLMKMVKSSFVEE----AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 267
V A +L+ ++ + L + +L++NN + Q F + ++
Sbjct: 204 VAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWF 263
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 402 | |||
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 100.0 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.9 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.89 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.88 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.87 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.86 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.86 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.85 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.85 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.83 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.83 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.83 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.82 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.82 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.82 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.82 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.8 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.8 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.79 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.78 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.78 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.78 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.77 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.77 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.76 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.76 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.76 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.74 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.74 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.73 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.72 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.69 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.67 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.66 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.64 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.6 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.45 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.43 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.43 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.1 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.96 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.95 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.91 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.84 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.8 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.74 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.73 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.68 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.44 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 98.43 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.41 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 98.39 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.35 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.35 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.32 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.31 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.25 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 98.21 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.18 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.11 | |
| 3qml_C | 315 | Protein SLS1, nucleotide exchange factor SIL1; arm | 98.1 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.02 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.94 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 97.92 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.92 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 97.9 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 97.89 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 97.83 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.74 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.73 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.72 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 97.69 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 97.59 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.57 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.52 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.48 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 97.31 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.12 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.12 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.08 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 96.86 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 96.7 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 96.53 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 96.19 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 95.92 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 95.9 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 95.87 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 95.76 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 95.22 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.09 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 94.95 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 94.94 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 94.82 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 94.73 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 94.61 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 94.6 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 94.31 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 93.75 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.64 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 93.6 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 93.24 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 93.14 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 93.03 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 92.81 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 92.66 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 92.65 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 92.44 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 91.85 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 91.4 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 90.94 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 90.93 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 90.6 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 90.5 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 90.35 | |
| 1juq_A | 171 | ADP-ribosylation factor binding protein GGA3; prot | 90.04 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 89.86 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 89.46 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 88.91 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 88.78 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 88.64 | |
| 3qml_C | 315 | Protein SLS1, nucleotide exchange factor SIL1; arm | 88.55 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 87.97 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 86.95 | |
| 1elk_A | 157 | Target of MYB1; superhelix of helices, endocytosis | 86.92 | |
| 1dvp_A | 220 | HRS, hepatocyte growth factor-regulated tyrosine k | 86.42 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 86.38 | |
| 3zyq_A | 226 | Hepatocyte growth factor-regulated tyrosine kinas | 86.05 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 86.04 | |
| 3c2g_A | 619 | SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev | 84.95 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 84.67 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 84.39 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 84.01 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 81.8 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 81.57 |
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=316.12 Aligned_cols=252 Identities=24% Similarity=0.296 Sum_probs=213.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhhcC----------CCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH-hc
Q 015709 115 MEIKELMEKLKTPSDAQLIQIAIDDLNNS----------TLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG-QL 183 (402)
Q Consensus 115 ~~L~ea~~~l~~~~d~~lMk~al~~L~~~----------~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~-lL 183 (402)
.||.++|+ ++||++++||+++.+|.++ +.+.++|+.|++.|.++++++||+++|++.||+++|+. +|
T Consensus 14 ~~~~~~~~--~~~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL 91 (296)
T 1xqr_A 14 VPRGSHMR--GQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYL 91 (296)
T ss_dssp ------CC--SCHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTT
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHH
Confidence 57777775 4599999999999999997 45668999999999999999999999999999999999 99
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015709 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 262 (402)
Q Consensus 184 ~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~-~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~ 262 (402)
+++++++|..|+|+||++++|||.+|+.+++.|++|+|+++|+++ +..++.+|+|||||++|+++++++.|.++||++.
T Consensus 92 ~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~ 171 (296)
T 1xqr_A 92 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSV 171 (296)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHH
Confidence 999999999999999999999999999999999999999999965 6889999999999999999999999999999999
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhH
Q 015709 263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA 342 (402)
Q Consensus 263 L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~ 342 (402)
|+.+|+++ +.++|++|+|+|++|+.. +++.+..+++.|+++.|+.+|.++|++++++++.+|.+|+...+...
T Consensus 172 L~~lL~~~--d~~v~~~A~~aLs~L~~~-----~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~ 244 (296)
T 1xqr_A 172 LMRAMQQQ--VQKLKVKSAFLLQNLLVG-----HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV 244 (296)
T ss_dssp HHHHHHSS--CHHHHHHHHHHHHHHHHH-----CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHhC-----ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHH
Confidence 99999986 789999999999999963 57788999999999999999999999999999999999998854333
Q ss_pred HHHHhcCCc-HHHHHHHHHHhHHhhh---hhhHhhhHHHH
Q 015709 343 LVLKDFCGL-DTALERLRQQLQEVML---EEDQRDYAMDV 378 (402)
Q Consensus 343 ~~~~~~~GL-~~~L~~L~~~~~~l~~---~e~~~~y~~~l 378 (402)
..++ .. ......|++.++.+.. .+|..+|+..+
T Consensus 245 ~~~~---~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~i 281 (296)
T 1xqr_A 245 RECR---EPELGLEELLRHRCQLLQQHEEYQEELEFCEKL 281 (296)
T ss_dssp HHHH---CGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHh---ccHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 3222 22 1234444445555441 34455666555
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-22 Score=184.39 Aligned_cols=217 Identities=18% Similarity=0.230 Sum_probs=191.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC-chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPID-NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD-nA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
+..+++.+.+++ ++.+..|+..|..+....+ +...+.+.|++++|+.+|+++++++|..|+++|++++.+++..+..
T Consensus 4 i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 4 VEKLVKLLTSTD--SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 456677777654 7889999999999987664 8889999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc
Q 015709 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~ 291 (402)
+.+.|+++.|+.+++++++.++..|+++|++++.+++.....+.+.|+++.|+.+++++ +..++..|+++|.+|+..
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~- 158 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASG- 158 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTS-
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcC-
Confidence 99999999999999998999999999999999999999999999999999999999986 678999999999999852
Q ss_pred cccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHH
Q 015709 292 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358 (402)
Q Consensus 292 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L 358 (402)
++.....+.+.|+++.|+.+|.++++.+++.++.+|.+|+...+..++.+.+.+++...++.|
T Consensus 159 ----~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll 221 (252)
T 4hxt_A 159 ----PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL 221 (252)
T ss_dssp ----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGG
T ss_pred ----CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 445567888999999999999999999999999999999987666666676455454444443
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-22 Score=180.17 Aligned_cols=192 Identities=18% Similarity=0.263 Sum_probs=174.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHH
Q 015709 136 AIDDLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE 214 (402)
Q Consensus 136 al~~L~~~~~t~e~k~~AL~~L~~Lv-e~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le 214 (402)
....+.+. +++.+..|+..|.++. .+.++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+..+++
T Consensus 17 l~~LL~s~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (210)
T 4db6_A 17 MVQQLNSP--DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (210)
T ss_dssp HHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHhcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 33444443 5788999999999998 55677788999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhccccc
Q 015709 215 LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (402)
Q Consensus 215 ~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~ 294 (402)
.|++|.|+.+++++++.++..|+++|++++.+++...+.+++.|+++.|+.+|+++ +..++..|+++|.+|+..
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~---- 168 (210)
T 4db6_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASG---- 168 (210)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTS----
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcC----
Confidence 99999999999999999999999999999999998888999999999999999986 678999999999999953
Q ss_pred CCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 295 MHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 295 ~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
++..+..+.+.|+++.|++++.+++.++++.|+.+|.+|+.
T Consensus 169 -~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 -GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp -CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred -CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 45677888999999999999999999999999999999874
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=182.29 Aligned_cols=205 Identities=17% Similarity=0.225 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 147 LEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 147 ~e~k~~AL~~L~~Lv-e~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
++.+..|+..|..++ .+.++...+.+.|++++|+.+|+++++++|..|+++|++++.+++..+..+++.|++|.|+.++
T Consensus 26 ~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL 105 (252)
T 4db8_A 26 MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 105 (252)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Confidence 467778888885544 3455677899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 305 (402)
+++++.++..|+++|+++..+.+.....+.+.||++.|+.+|+++ +..++..|+++|.+|+.. ++.....+.+
T Consensus 106 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~ 178 (252)
T 4db8_A 106 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASG-----GNEQIQAVID 178 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTS-----CHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcC-----ChHHHHHHHH
Confidence 999999999999999999998777668899999999999999986 678999999999999852 4566777889
Q ss_pred CCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHH
Q 015709 306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358 (402)
Q Consensus 306 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L 358 (402)
.|+++.|+.+|.++++.+++.++.+|.+|+...+..+..+.+.+++...+..|
T Consensus 179 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll 231 (252)
T 4db8_A 179 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 231 (252)
T ss_dssp TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHh
Confidence 99999999999999999999999999999987766666666455554444443
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-21 Score=173.29 Aligned_cols=181 Identities=18% Similarity=0.182 Sum_probs=159.2
Q ss_pred HhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc
Q 015709 171 SKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 250 (402)
Q Consensus 171 ~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~ 250 (402)
..-|+.++|+.+|+++++++|..|+++|++++.+++..+..+++.|++|.|+.+|+++++.++..|+++|++++.+++..
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHH
Q 015709 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA 330 (402)
Q Consensus 251 ~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~a 330 (402)
...+++.||++.|+.+|+++ +..++..|+++|.+|+.. ++.....+.+.|+++.|+++|.+++.++++.++.+
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASG-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTS-----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcC-----CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999986 678999999999999852 45666778899999999999999999999999999
Q ss_pred HHHHhcCChhhHHHHHhcCCcHHHHHHH
Q 015709 331 IKNLLQLRTTEALVLKDFCGLDTALERL 358 (402)
Q Consensus 331 L~~L~~~~~~~~~~~~~~~GL~~~L~~L 358 (402)
|.+|+...+..+..+.+.+++..++..|
T Consensus 162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll 189 (210)
T 4db6_A 162 LSNIASGGNEQKQAVKEAGALEKLEQLQ 189 (210)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHcCCcHHHHHHHHCCCHHHHHHHH
Confidence 9999998777777776444444444433
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-20 Score=171.38 Aligned_cols=199 Identities=17% Similarity=0.207 Sum_probs=181.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~-iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
.+..++..+.++ +.+.+..|+..|..+... .++...+.+.|+++.|+.+|+++++++|..|+++|++++..++..+.
T Consensus 45 ~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 122 (252)
T 4hxt_A 45 GVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 122 (252)
T ss_dssp HHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 456667777765 478899999999999987 67888899999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.+.+.|+++.|+++++++++.++..|+++|++++.+++...+.+.+.|+++.|+.++.++ +..++..|+++|.+|+.
T Consensus 123 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~- 199 (252)
T 4hxt_A 123 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIAS- 199 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTT-
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC--CHHHHHHHHHHHHHHHc-
Confidence 999999999999999999999999999999999999888888999999999999999976 67899999999999985
Q ss_pred ccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCCh
Q 015709 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339 (402)
Q Consensus 291 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 339 (402)
.++.....+.+.|+++.|++++.++++++++.|+.+|.+|.....
T Consensus 200 ----~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 200 ----GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp ----SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred ----CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 245677788899999999999999999999999999999997753
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=175.01 Aligned_cols=196 Identities=17% Similarity=0.222 Sum_probs=177.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
.+..++..+.+++ ++.+..|+..|.++.. +.++...+.+.|++++|+.+|+++++.+|..|+++|++++.+++..+.
T Consensus 55 ~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 132 (252)
T 4db8_A 55 ALPALVQLLSSPN--EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132 (252)
T ss_dssp HHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH
Confidence 4566777787764 7889999999999997 567888999999999999999999999999999999999998887668
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.+.+.|++|.|++++++++..++..|+++|++++.+++.....+.+.|+++.|+.+|.++ +..++..|+++|.+|+.
T Consensus 133 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~- 209 (252)
T 4db8_A 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS- 209 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHTT-
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhc-
Confidence 899999999999999999999999999999999999988889999999999999999986 67899999999999984
Q ss_pred ccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 291 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
.++..+..+.+.|+++.|+.++.++++++++.|+.+|.+|+.
T Consensus 210 ----~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 210 ----GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp ----SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred ----CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 355677788999999999999999999999999999999864
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-20 Score=186.02 Aligned_cols=212 Identities=16% Similarity=0.160 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHccCCCC-chhHHHhcCC-HHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHHH
Q 015709 147 LEDSQRALQELLILVEPID-NANDLSKLGG-LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMK 223 (402)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iD-nA~~l~~lGg-l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN-Np~~Q~~~le~g~L~~Ll~ 223 (402)
++-+..|...|.+++..-+ +...+...|| +|+|+.+|.++++++|..|+|+|++++.+ |+.++..+.+.|++|+|++
T Consensus 98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~ 177 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 177 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence 4668899999999987665 5555666777 99999999999999999999999999986 7889999999999999999
Q ss_pred hh-cCCCHHHHHHHHHHHHHHhcCChhcHHHHH-hcCcHHHHHHhhcCCCcc--HHHHHHHHHHHHHHhhcccccCCCCc
Q 015709 224 MV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFE--IRLHRKAVSLVGDLAKCQLENMHKVE 299 (402)
Q Consensus 224 LL-~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~-~~gGi~~L~~lL~s~~~d--~klq~kA~~lL~~L~~~~l~~~~~~~ 299 (402)
+| ++.+..++..|+.||.++..+++.++..+. ..||++.|+.+|.+++.. ..++..|+++|.+|+... ..+++.
T Consensus 178 lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~~ 255 (354)
T 3nmw_A 178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNEDH 255 (354)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc--cCCHHH
Confidence 74 566788899999999999887777777887 799999999999876321 258999999999998410 024577
Q ss_pred chhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHH
Q 015709 300 PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 300 ~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~ 360 (402)
+..+.+.|+++.|+++|.+++..+++.|+.+|.+|+...++.++.+.+.+++.++++.|++
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s 316 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 316 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTC
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhC
Confidence 8889999999999999999999999999999999997666677777756666666665543
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-19 Score=187.08 Aligned_cols=220 Identities=16% Similarity=0.194 Sum_probs=184.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc--hhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN--ANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQ 209 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn--A~~l~~lGgl~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNNp~~Q 209 (402)
+.+.++.+.+. +++.+..|...+..++..-.| -+.+++.|++|+|+++|+ ++++.+|..|+|+|++++..++..+
T Consensus 59 i~~~v~~l~s~--d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 59 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp HHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 55566666654 578899999999988754444 578999999999999996 4679999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC---ccHHHHHHHHHHHHH
Q 015709 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS---FEIRLHRKAVSLVGD 286 (402)
Q Consensus 210 ~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~---~d~klq~kA~~lL~~ 286 (402)
..+++.|++|.|+++|++++..++..|+|||++++.+++..+..+.+.||++.|+.+|.++. ....+++.++|++++
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998753 234678899999999
Q ss_pred HhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHH
Q 015709 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (402)
Q Consensus 287 L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~ 359 (402)
++.+ ...........|+++.|+.+|.+++.+++..++.+|.+|+....+..+.+...+++..+++.|+
T Consensus 217 l~~~-----~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 284 (510)
T 3ul1_B 217 LCRN-----KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 284 (510)
T ss_dssp HHCC-----CSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred Hhhc-----ccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc
Confidence 9964 2233334445789999999999999999999999999999987766666664555555555554
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-19 Score=186.96 Aligned_cols=208 Identities=14% Similarity=0.168 Sum_probs=181.6
Q ss_pred CHHHHHHHHHHHHHccCCCC-chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015709 146 SLEDSQRALQELLILVEPID-NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iD-nA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~L 224 (402)
+++.+..|+..|.++....+ +...+...|+++.|+.+|.++++.++..|+++|++++..++..+..+++.|+++.|+.+
T Consensus 264 ~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~L 343 (529)
T 3tpo_A 264 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL 343 (529)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHH
Confidence 56788899999999997664 44567789999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHH
Q 015709 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (402)
Q Consensus 225 L~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~ 304 (402)
++++++.++..|+|+|++++.+++.....+++.|+++.|+.+|.++ +..+|..|+|+|.+|+.. .+++....++
T Consensus 344 L~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nl~~~----~~~~~~~~l~ 417 (529)
T 3tpo_A 344 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKAAAWAITNYTSG----GTVEQIVYLV 417 (529)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----SCHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHcC----CCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 678999999999999864 3556777899
Q ss_pred hCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC------hhhHHHHHhcCCcHHHHHHHHH
Q 015709 305 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR------TTEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 305 ~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~------~~~~~~~~~~~GL~~~L~~L~~ 360 (402)
+.|+++.|+++|.++|++++..++.+|.+++... +..+..+. .+|..+.++.|+.
T Consensus 418 ~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~ie-e~ggl~~ie~Lq~ 478 (529)
T 3tpo_A 418 HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE-ECGGLDKIEALQR 478 (529)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH-HTTCHHHHTGGGG
T ss_pred HCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHH-HCCcHHHHHHHHc
Confidence 9999999999999999999999999999998532 11234566 5555556676654
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-19 Score=169.17 Aligned_cols=181 Identities=14% Similarity=0.149 Sum_probs=156.2
Q ss_pred CHHHHHHhcCCCCH--HHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHH
Q 015709 175 GLSVLVGQLNHPDT--DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252 (402)
Q Consensus 175 gl~~Li~lL~s~~~--~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~ 252 (402)
.+++++++|.++++ +++..|++.|.+++.+|+..+..+.+.|+||+|+++|+++++.++..|+|||.++..+++.+..
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999888 9999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhc---------------
Q 015709 253 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA--------------- 317 (402)
Q Consensus 253 ~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~--------------- 317 (402)
.+.++||+++|+++|.+. .+..++..|+.+|.+|+. .+..+..+.+. .++.|++++.
T Consensus 89 ~I~~~GaI~~Lv~lL~~~-~~~~~~e~a~~aL~nLS~------~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQT-RDLETKKQITGLLWNLSS------NDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp HHHHTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHT------SGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred HHHHcCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHc------ChhhHHHHHhc-cHHHHHHHHhccccCCccccccccc
Confidence 999999999999999842 256799999999999984 34566677764 6899988763
Q ss_pred -CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCc-HHHHHHHHHHhH
Q 015709 318 -SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQ 363 (402)
Q Consensus 318 -~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL-~~~L~~L~~~~~ 363 (402)
..++++++.|..+|.+|+...++.|+.+++.+|+ +.++..|+....
T Consensus 161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~ 208 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIA 208 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhh
Confidence 1377999999999999999777789999977776 566666665443
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-18 Score=181.60 Aligned_cols=220 Identities=16% Similarity=0.188 Sum_probs=183.7
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC--chhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPID--NANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQ 209 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD--nA~~l~~lGgl~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNNp~~Q 209 (402)
+.+.++.+.+. +++.+..|+..+..++..-. ....+++.|++|+|+.+|. ++++.+|..|+|+|++++.+++..+
T Consensus 78 l~~lv~~l~s~--d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 78 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp HHHHHHHHTSS--CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 45556666554 57888999999988774433 3578999999999999995 5679999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC---ccHHHHHHHHHHHHH
Q 015709 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS---FEIRLHRKAVSLVGD 286 (402)
Q Consensus 210 ~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~---~d~klq~kA~~lL~~ 286 (402)
..+++.|++|.|+.++.+++..++..|+|||++|+.+++..+..++++||++.|+.+|.++. ....+++.++|++++
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998653 234678899999999
Q ss_pred HhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHH
Q 015709 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (402)
Q Consensus 287 L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~ 359 (402)
++.+ ...........|+++.|+.+|.+++++++..++.+|.+|+....+..+.+...+++..+++.|+
T Consensus 236 l~~~-----~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~ 303 (529)
T 3tpo_A 236 LCRN-----KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 303 (529)
T ss_dssp HHCC-----CTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHhc-----ccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc
Confidence 9964 2233344455789999999999999999999999999999988766666664555555555554
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=185.76 Aligned_cols=212 Identities=16% Similarity=0.160 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHccCCCC-chhHHHhcCC-HHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHHH
Q 015709 147 LEDSQRALQELLILVEPID-NANDLSKLGG-LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMK 223 (402)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iD-nA~~l~~lGg-l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN-Np~~Q~~~le~g~L~~Ll~ 223 (402)
++-+..|...|.+++..-+ +...+...|| +|+|+.+|.+++++++..|+|+|++++.+ ++.++..+.+.|++|+|++
T Consensus 214 ~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~ 293 (458)
T 3nmz_A 214 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 293 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHH
Confidence 4567889999999987665 4445556677 99999999999999999999999999985 7889999999999999999
Q ss_pred hh-cCCCHHHHHHHHHHHHHHhcCChhcHHHHH-hcCcHHHHHHhhcCCCcc--HHHHHHHHHHHHHHhhcccccCCCCc
Q 015709 224 MV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFE--IRLHRKAVSLVGDLAKCQLENMHKVE 299 (402)
Q Consensus 224 LL-~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~-~~gGi~~L~~lL~s~~~d--~klq~kA~~lL~~L~~~~l~~~~~~~ 299 (402)
+| ++.+..++..|+.||.+|..+++.++..+. ..||++.|+.+|.+++.. ..++..|+++|.+|+... ..+++.
T Consensus 294 lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~~ 371 (458)
T 3nmz_A 294 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNEDH 371 (458)
T ss_dssp HHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc--cCCHHH
Confidence 75 556788899999999999887777777887 799999999999976322 258999999999998410 025677
Q ss_pred chhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHH
Q 015709 300 PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 300 ~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~ 360 (402)
+..+.+.|+++.|+.+|.+++.++++.|+.+|.+|+...++.++.+.+.|++.++++.|+.
T Consensus 372 ~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s 432 (458)
T 3nmz_A 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 432 (458)
T ss_dssp HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC
T ss_pred HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC
Confidence 8889999999999999999999999999999999997666677777767777777666543
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-19 Score=181.37 Aligned_cols=174 Identities=13% Similarity=0.110 Sum_probs=145.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchh-HHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015709 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (402)
Q Consensus 134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~-~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~ 212 (402)
..++..|.++ +++.+..|...|..++..-++.+ .+.+.||+|+|+.+|++++++++..|+|+|++++..|+.++..+
T Consensus 5 ~~lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 5 PKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4456667665 45789999999999886665544 89999999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc--------CCC------ccHHHH
Q 015709 213 LELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG--------NSS------FEIRLH 277 (402)
Q Consensus 213 le~g~L~~Ll~LL~-s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~--------s~~------~d~klq 277 (402)
++.|++|+|+++|+ +++++++..|+|+|+++..+ +.....+++ ||++.|+.+|. ++. .+..++
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 99999999999999 77889999999999999987 778888888 99999999993 221 246678
Q ss_pred HHHHHHHHHHhhcccccCCCCcchhHHhC-CcHHHHHHhhc
Q 015709 278 RKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVDLTA 317 (402)
Q Consensus 278 ~kA~~lL~~L~~~~l~~~~~~~~~~l~~~-g~v~~Lv~lL~ 317 (402)
+.|+|+|++|+. +++.+..+.+. |+++.|+.+|.
T Consensus 161 ~~a~~aL~nLs~------~~~~~~~i~~~~g~i~~Lv~lL~ 195 (457)
T 1xm9_A 161 FNATGCLRNLSS------ADAGRQTMRNYSGLIDSLMAYVQ 195 (457)
T ss_dssp HHHHHHHHHHTT------SHHHHHHHTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcc------CHHHHHHHHHcCCCHHHHHHHHH
Confidence 899999999985 24566666665 77777776664
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-19 Score=184.62 Aligned_cols=208 Identities=14% Similarity=0.171 Sum_probs=182.0
Q ss_pred CHHHHHHHHHHHHHccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015709 146 SLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDn-A~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~L 224 (402)
+.+.+..|+..|.++....++ ...+...|+++.|+.+|.++++.++..|+++|++++..++..+..+++.|+++.|+.+
T Consensus 245 ~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~L 324 (510)
T 3ul1_B 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL 324 (510)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-C
T ss_pred CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHH
Confidence 567888999999999986654 4567789999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHH
Q 015709 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (402)
Q Consensus 225 L~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~ 304 (402)
++++++.++..|+|+|++++.+++.....+++.|+++.|+.+|+++ +.++|..|+|+|.+|+.. .+++.+..+.
T Consensus 325 L~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~Nl~~~----~~~~~~~~L~ 398 (510)
T 3ul1_B 325 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAITNYTSG----GTVEQIVYLV 398 (510)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----CCHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcc----CCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 678999999999999864 3556777899
Q ss_pred hCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCCh------hhHHHHHhcCCcHHHHHHHHH
Q 015709 305 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT------TEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 305 ~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~------~~~~~~~~~~GL~~~L~~L~~ 360 (402)
+.|+++.|+++|.++|++++..++.+|.+++...+ ..+..+. .+|..+.++.|+.
T Consensus 399 ~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~ie-e~ggl~~ie~Lq~ 459 (510)
T 3ul1_B 399 HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE-ECGGLDKIEALQR 459 (510)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH-HTTHHHHHHHGGG
T ss_pred HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHH-HcCcHHHHHHHHc
Confidence 99999999999999999999999999999986321 1234566 5666667777754
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=181.76 Aligned_cols=206 Identities=13% Similarity=0.112 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhcCChHhHHHHHHc-
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH-----------PDTDIRKISAWILGKASQNNPLVQKQVLEL- 215 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s-----------~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~- 215 (402)
+.+..|+..|.++.-+.++.+.+++.||+++|+.+|.+ .++++|..|+|+|.+++.+++..+..+...
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 45667788888888788889999999999999999942 357899999999999999998888888655
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhcHHHHHhcCcHHHHHHhh-cCCCccHHHHHHHHHHHHHHhhcccc
Q 015709 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDIL-GNSSFEIRLHRKAVSLVGDLAKCQLE 293 (402)
Q Consensus 216 g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~-~~~~~~~f~~~gGi~~L~~lL-~s~~~d~klq~kA~~lL~~L~~~~l~ 293 (402)
|+||.|+++|++++++++..|+|||+++..+ ++.+...+.+.||++.|+.+| +++ +..+++.|+.+|.+|+..
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~--~~~~~~~A~~aL~nLs~~--- 201 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK--KESTLKSVLSALWNLSAH--- 201 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTT---
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC--CHHHHHHHHHHHHHHHcc---
Confidence 5599999999999999999999999999985 677889999999999999985 443 567899999999999842
Q ss_pred cCCCCcchhHH-hCCcHHHHHHhhcCCCh----HHHHHHHHHHHHHhc---CChhhHHHHHhcCCcHHHHHHHHH
Q 015709 294 NMHKVEPPLFR-DRFFLKSVVDLTASADL----DLQEKALAAIKNLLQ---LRTTEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 294 ~~~~~~~~~l~-~~g~v~~Lv~lL~~~d~----dv~E~aL~aL~~L~~---~~~~~~~~~~~~~GL~~~L~~L~~ 360 (402)
..+.+..+. ..|.++.|+++|.+++. ++++.++.+|.+|+. ..++.++.+.+.+++.+++..|++
T Consensus 202 --~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~ 274 (354)
T 3nmw_A 202 --CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS 274 (354)
T ss_dssp --CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred --ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC
Confidence 234455666 79999999999987754 599999999999996 455678888867777788777764
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-17 Score=172.02 Aligned_cols=219 Identities=16% Similarity=0.177 Sum_probs=186.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC--CchhHHHhcCCHHHHHHhcCCCC-HHHHHHHHHHHHHHhcCChHhH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNHPD-TDIRKISAWILGKASQNNPLVQ 209 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i--DnA~~l~~lGgl~~Li~lL~s~~-~~Ir~~Aa~vLg~~aqNNp~~Q 209 (402)
+..+++.|.++ +++.+..|+..|..++... ++...+...|+++.|+.+|.+++ +.+|..|+|+|++++..++..+
T Consensus 76 l~~lv~~L~s~--~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 76 LPAMIGGVYSD--DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp HHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 56667777654 5788999999998886543 56788999999999999998876 9999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 210 ~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
..+++.|++|.|+.++.++++.++..|+|+|++++.+++.....+...|+++.|+.+|... .+..++..|+|+|.+|+.
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999898899999999999999999543 367899999999999995
Q ss_pred cccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHH
Q 015709 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 290 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~ 360 (402)
. . .........|+++.|+.+|.+++.+++..++.+|.+|+.......+.+...+++..++..|+.
T Consensus 233 ~-----~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~ 297 (528)
T 4b8j_A 233 G-----K-PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 297 (528)
T ss_dssp S-----S-SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC
T ss_pred C-----C-CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC
Confidence 3 2 223344568999999999999999999999999999998876555556545666666665543
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-18 Score=177.63 Aligned_cols=218 Identities=15% Similarity=0.147 Sum_probs=185.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCch-hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA-NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA-~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
+..++..+.+. +.+.+..|+..|.+++...++. ..+...|+++.|+.+|.++++.++..|+++|++++.+++..++.
T Consensus 246 l~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 323 (528)
T 4b8j_A 246 LPALARLIHSN--DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQC 323 (528)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHH
Confidence 33444444433 5678889999999999776543 57888999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 212 VLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~-~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
+++.|++|.|+.+|.++ ++.++..|+|+|++++.+++.....++..|+++.|+.+|.++ +..++..|+++|.+|+..
T Consensus 324 ~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 324 IIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcC
Confidence 99999999999999998 899999999999999999888888999999999999999976 678999999999999963
Q ss_pred ccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChh-----------hHHHHHhcCCcHHHHHHHH
Q 015709 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT-----------EALVLKDFCGLDTALERLR 359 (402)
Q Consensus 291 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~-----------~~~~~~~~~GL~~~L~~L~ 359 (402)
.++.....+.+.|+++.|+.+|..+|++++..++.+|.+|+...+. ....+. .+|..+.++.|+
T Consensus 402 ----~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~l~~L~ 476 (528)
T 4b8j_A 402 ----GSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMID-EAEGLEKIENLQ 476 (528)
T ss_dssp ----SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHH-HTTHHHHHHHGG
T ss_pred ----CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHH-HCCcHHHHHHHH
Confidence 3467778888999999999999999999999999999999875432 244556 445444555554
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.9e-18 Score=168.21 Aligned_cols=198 Identities=19% Similarity=0.162 Sum_probs=172.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
+..++..+.+. +.+.+..++..|.+++... ++...+...|++++|+.+|.++++.+|..|+++|++++.+++...+.
T Consensus 194 l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 271 (450)
T 2jdq_A 194 LNVLSWLLFVS--DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQV 271 (450)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHccC--CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHH
Confidence 33444444432 4677888999999998754 56677888999999999999999999999999999999999988888
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc
Q 015709 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~ 291 (402)
+++.|+++.|+.+++++++.++..|+++|++++.+++...+.+++.|+++.|+.+|.++ +.++|..|+++|.+|+..
T Consensus 272 ~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~- 348 (450)
T 2jdq_A 272 ILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA--EFRTRKEAAWAITNATSG- 348 (450)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHH-
T ss_pred HHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcC-
Confidence 99999999999999998899999999999999999988888899999999999999975 678999999999999863
Q ss_pred cccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 292 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 292 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
.++.....+.+.|+++.|+++|..++.++++.++.+|.+++...
T Consensus 349 ---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 349 ---GSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp ---CCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 23455667778999999999999999999999999999998754
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-18 Score=176.51 Aligned_cols=197 Identities=14% Similarity=0.067 Sum_probs=170.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHccCC--CCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 134 QIAIDDLNNSTLSLEDSQRALQELLILVEP--IDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~--iDnA~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
..++..|.++ +.+.+..|...|.++... .+|...+.+.||+++|+.+| .+++++++..|+.+|++++..++..+.
T Consensus 246 p~LV~LL~s~--~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~ 323 (458)
T 3nmz_A 246 RALVAQLKSE--SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323 (458)
T ss_dssp HHHHHGGGCS--CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 3444555543 578899999999998864 45777899999999999975 678899999999999999987788888
Q ss_pred HHH-HcCcHHHHHHhhcCCCH----HHHHHHHHHHHHHhc---CChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015709 211 QVL-ELGALSKLMKMVKSSFV----EEAVKALYTVSSLIR---NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 211 ~~l-e~g~L~~Ll~LL~s~~~----~vr~kAl~ALS~LiR---~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
.+. ..|++|.|+++|.+.++ +++..|+++|+++.. +++.+.+.++++||++.|+.+|+++ +..++..|++
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~--~~~v~~~A~~ 401 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH--SLTIVSNACG 401 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS--CHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC--ChHHHHHHHH
Confidence 887 78999999999997654 488999999999986 6888999999999999999999986 5779999999
Q ss_pred HHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCCh
Q 015709 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339 (402)
Q Consensus 283 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 339 (402)
+|++|+. .+++.+..+.+.|+++.|+++|.+++..+++.|+.+|.+|+...+
T Consensus 402 aL~nLa~-----~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 402 TLWNLSA-----RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHS-----SCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHc-----CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999984 356788899999999999999999999999999999999998753
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-18 Score=173.83 Aligned_cols=177 Identities=14% Similarity=0.178 Sum_probs=156.1
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
.+|.|+.+|+++++++|..|+++|++++.+++.++..+.+.|++|.|+++|+++++.++..|++||.++..+++++...+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HhcCcHHHHHHhhc-CCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhh--------cCC------
Q 015709 255 YVEAGDLMLQDILG-NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT--------ASA------ 319 (402)
Q Consensus 255 ~~~gGi~~L~~lL~-s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL--------~~~------ 319 (402)
+++||++.|+++|. ++ +..++..|+|+|.+|+. +++.+..+.+ |+++.|+++| .++
T Consensus 83 ~~~G~i~~Lv~lL~~~~--~~~~~~~a~~aL~nLa~------~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e 153 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTG--NAEIQKQLTGLLWNLSS------TDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp HHTTCHHHHHHHHTTCC--CHHHHHHHHHHHHHHHT------SSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------
T ss_pred HHcCCHHHHHHHHhhCC--CHHHHHHHHHHHHHHhc------CHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcc
Confidence 99999999999999 54 67899999999999994 3677888888 9999999999 332
Q ss_pred --ChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCcHHHHHHHHHH
Q 015709 320 --DLDLQEKALAAIKNLLQLRTTEALVLKDF-CGLDTALERLRQQ 361 (402)
Q Consensus 320 --d~dv~E~aL~aL~~L~~~~~~~~~~~~~~-~GL~~~L~~L~~~ 361 (402)
+.+++..|+.+|.+|+.. ++.++.+.+. +++.+++..|+..
T Consensus 154 ~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~ 197 (457)
T 1xm9_A 154 VVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNC 197 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhh
Confidence 456667999999999988 5688888855 6677777777654
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-17 Score=168.34 Aligned_cols=218 Identities=15% Similarity=0.144 Sum_probs=183.7
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC--CchhHHHhcCCHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCChHhH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNHP-DTDIRKISAWILGKASQNNPLVQ 209 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i--DnA~~l~~lGgl~~Li~lL~s~-~~~Ir~~Aa~vLg~~aqNNp~~Q 209 (402)
+..+++.|.+. +++.+..|+..|..++... .+...+...|+++.|+.+|.++ ++.+|..|+|+|++++..++..+
T Consensus 89 i~~lv~~L~s~--~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 89 LPQMTQQLNSD--DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp HHHHHHHHSCS--SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 44555666554 5788999999999987643 4556788999999999999987 89999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 210 ~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
..+++.|++|.|+.+|+++++.++..|+|+|++++.+++.....+...|+++.|+.+|.++ +..++..|+++|.+|+.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN--KPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC--CHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC--CHHHHHHHHHHHHHHhC
Confidence 9999999999999999998999999999999999999888899999999999999999984 67899999999999995
Q ss_pred cccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHH
Q 015709 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (402)
Q Consensus 290 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~ 359 (402)
. ...........++++.|+.+|.++|..++..++.+|.+|+...+...+.+.+.+++..++..|+
T Consensus 245 ~-----~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~ 309 (530)
T 1wa5_B 245 G-----KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309 (530)
T ss_dssp C-----SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred C-----CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC
Confidence 3 2133345566899999999999999999999999999999876555555554555555555553
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.3e-18 Score=159.85 Aligned_cols=197 Identities=13% Similarity=0.135 Sum_probs=160.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lv-e~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
+..+++.|..++...+.+..|...|..++ .+.++...+...||+|+|+++|+++++++|..|+|+|++++..|++++..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 34456667666544466778888888877 45668888999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC--------------CCccHHH
Q 015709 212 VLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN--------------SSFEIRL 276 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~-s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s--------------~~~d~kl 276 (402)
+.+.|+||+|+++|+ +.+.+++..|..+|-+|.. ++.+...+.+ +|+++|++++.. ...+..+
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 999999999999998 4678888877777777654 4555666665 589999987630 1136789
Q ss_pred HHHHHHHHHHHhhcccccCCCCcchhHHhC-CcHHHHHHhhcC------CChHHHHHHHHHHHHHhc
Q 015709 277 HRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVDLTAS------ADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 277 q~kA~~lL~~L~~~~l~~~~~~~~~~l~~~-g~v~~Lv~lL~~------~d~dv~E~aL~aL~~L~~ 336 (402)
+.+|+.+|.+|+. .+++.+..+.+. |+|+.|+.+++. .+...+|.++.+|.+|..
T Consensus 168 ~~na~~~L~nLss-----~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 168 FYNVTGCLRNMSS-----AGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHTT-----SCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 9999999999984 355788888875 789999999875 266899999999999864
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.1e-18 Score=184.69 Aligned_cols=223 Identities=10% Similarity=0.017 Sum_probs=182.3
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHh-cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh---
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK-LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP--- 206 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~-lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp--- 206 (402)
.+.+.+...|.++..+.+.+..|++.|.++..+.+....++. .|++|+|+.+|+++++.++..|+|+|+|++...+
T Consensus 377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~ 456 (810)
T 3now_A 377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE 456 (810)
T ss_dssp HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhh
Confidence 456667777777655668899999999999999999999886 6899999999999999999999999999998642
Q ss_pred --------------------------HhH---HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhc
Q 015709 207 --------------------------LVQ---KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (402)
Q Consensus 207 --------------------------~~Q---~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~ 257 (402)
.++ +.+++.|++|.|+.+++++++.++..|+|+|+|++. ++.++..++++
T Consensus 457 ~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~ 535 (810)
T 3now_A 457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQE 535 (810)
T ss_dssp CCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHT
T ss_pred hhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHC
Confidence 234 678999999999999999999999999999999985 57789999999
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcc-hhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHh
Q 015709 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP-PLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLL 335 (402)
Q Consensus 258 gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~-~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~ 335 (402)
||+++|+.+|+++ +...|+.|+|+|++|+.. .++... ..-...|+++.|+++|.++ +...+..|+.||.+|+
T Consensus 536 Gaip~Lv~LL~s~--~~~~k~~Aa~AL~nL~~~----~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa 609 (810)
T 3now_A 536 GGVKALLRMALEG--TEKGKRHATQALARIGIT----INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA 609 (810)
T ss_dssp THHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----SCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHccC--CHHHHHHHHHHHHHHhcC----CChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 9999999999986 567899999999999863 232211 0001246999999999876 4445678999999999
Q ss_pred cCChhhHHHHHhcCCcHHHHHHHHH
Q 015709 336 QLRTTEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 336 ~~~~~~~~~~~~~~GL~~~L~~L~~ 360 (402)
..+++.++.+.+.+|+......|.+
T Consensus 610 ~~~d~~~~~Ii~aG~l~~Lv~LL~s 634 (810)
T 3now_A 610 SMNESVRQRIIKEQGVSKIEYYLME 634 (810)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcC
Confidence 9876666666656676666555543
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-17 Score=169.97 Aligned_cols=219 Identities=14% Similarity=0.126 Sum_probs=182.7
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
+..+++.|.++. +++.+..|+..|..+.... ++...+...|++++|+.+|.++++.+|..|+|+|++++.+++..+..
T Consensus 132 i~~Lv~~L~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~ 210 (530)
T 1wa5_B 132 VPRLVEFMRENQ-PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 210 (530)
T ss_dssp HHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHH
Confidence 445555565542 5678889999999988754 56677888999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc
Q 015709 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~ 291 (402)
+++.|+++.|+.++.+.+..++..|+|+|++++++..+....+...|+++.|+.+|.++ +..++..|+++|.+|+..
T Consensus 211 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~- 287 (530)
T 1wa5_B 211 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSDG- 287 (530)
T ss_dssp HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHSS-
T ss_pred HHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCC-
Confidence 99999999999999998889999999999999998644445666789999999999976 678999999999999842
Q ss_pred cccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHH
Q 015709 292 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (402)
Q Consensus 292 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~ 359 (402)
.+.....+.+.|+++.|+.+|.+++..+++.++.+|.+++...+...+.+.+.+++...+..|+
T Consensus 288 ----~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 351 (530)
T 1wa5_B 288 ----PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS 351 (530)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred ----CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHc
Confidence 3455677888999999999999999999999999999999876555555553444444444443
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-17 Score=163.61 Aligned_cols=219 Identities=15% Similarity=0.168 Sum_probs=180.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~-iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
.+..+++.+.+.. +++.+..|+..|..+... .++...+...|+++.|+.+|+++++.+|..|+++|++++.+++..+.
T Consensus 65 ~i~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 65 VVARFVEFLKRKE-NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp HHHHHHHHHTCTT-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 4555666666542 568889999999998874 46677788899999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCC-hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015709 211 QVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s-~~~~vr~kAl~ALS~LiR~~-~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~ 288 (402)
.+++.|+++.|+.++.+ .+..++..|+++|++++++. +.....++ .++++.|+.++.++ +..++..++++|.+|+
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~ 220 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS--DTDVLADACWALSYLS 220 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC--CHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC--CHHHHHHHHHHHHHHH
Confidence 99999999999999996 57899999999999999876 43333333 79999999999975 6789999999999998
Q ss_pred hcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHH
Q 015709 289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (402)
Q Consensus 289 ~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~ 359 (402)
.. .+.....+.+.|+++.|+.+|.+++..+++.++.+|.+++...+...+.+.+.+++...+..|+
T Consensus 221 ~~-----~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 286 (450)
T 2jdq_A 221 DG-----PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS 286 (450)
T ss_dssp SS-----SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTT
T ss_pred CC-----CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHc
Confidence 52 3345667788999999999999999999999999999999887655554543444444444443
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-17 Score=171.99 Aligned_cols=182 Identities=14% Similarity=0.114 Sum_probs=159.0
Q ss_pred hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-Chhc
Q 015709 172 KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAG 250 (402)
Q Consensus 172 ~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~-~~~~ 250 (402)
..+++++|+.+|.++++++|..|+++|.+++..++..+..+.+.|+||+|+++|++++..++..|+|||.+|+.+ ++.+
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 367899999999999999999999999999999999999999999999999999999999999999999999986 6899
Q ss_pred HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhc-------------
Q 015709 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA------------- 317 (402)
Q Consensus 251 ~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~------------- 317 (402)
...++++||++.|+.+|++.. +..++..|+++|.+|+. +++.+..+.+ +.++.|+++|.
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~-~~~~~e~aa~aL~nLS~------~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~ 197 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKAR-DMDLTEVITGTLWNLSS------HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNED 197 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCC-SHHHHHHHHHHHHHHTT------SGGGHHHHHH-HTHHHHHHHTHHHHHCCC------
T ss_pred HHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHhC------CchhhHHHHh-ccHHHHHHHHhccccccccccccc
Confidence 999999999999999999742 56789999999999984 4566777775 56999999871
Q ss_pred -----CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcH-HHHHHHHHH
Q 015709 318 -----SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD-TALERLRQQ 361 (402)
Q Consensus 318 -----~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~-~~L~~L~~~ 361 (402)
.++.++++.|..+|.+|+...++.|+.+++.+|+- +++..|+..
T Consensus 198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~ 247 (584)
T 3l6x_A 198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAE 247 (584)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 23689999999999999998877788888777764 666666654
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-16 Score=161.55 Aligned_cols=221 Identities=15% Similarity=0.179 Sum_probs=178.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
.+..++..|.+. .+.+.+..|+..|..+....++...+.+.|++++|+.+|+++++.+|..|+++|++++.+++..+..
T Consensus 60 ~i~~Lv~~L~~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 138 (529)
T 1jdh_A 60 MVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138 (529)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred hHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHH
Confidence 455566666654 2678888999999999888888999999999999999999999999999999999999998888999
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc
Q 015709 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~ 291 (402)
+.+.|++|.|++++.+++..++..++.+|++++.+++.....+.+.||++.|+.+|+++. +...+..++.++.+|+.
T Consensus 139 i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~-- 215 (529)
T 1jdh_A 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-- 215 (529)
T ss_dssp HHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTT--
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhc--
Confidence 999999999999999988899999999999999999999999999999999999998652 33445555555555553
Q ss_pred cccCCCCcchhHHhC---------------------------------------CcHHHHHHhhcCCChHHHHHHHHHHH
Q 015709 292 LENMHKVEPPLFRDR---------------------------------------FFLKSVVDLTASADLDLQEKALAAIK 332 (402)
Q Consensus 292 l~~~~~~~~~~l~~~---------------------------------------g~v~~Lv~lL~~~d~dv~E~aL~aL~ 332 (402)
++..+..+.+. |+++.|+.+|.++++++++.++.+|.
T Consensus 216 ----~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 291 (529)
T 1jdh_A 216 ----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 291 (529)
T ss_dssp ----STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ----CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22333333333 45566667777778888999999999
Q ss_pred HHhcCChhhHHHHHhcCCcHHHHHHHHH
Q 015709 333 NLLQLRTTEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 333 ~L~~~~~~~~~~~~~~~GL~~~L~~L~~ 360 (402)
+|+...++.++.+.+.+|+...+..|+.
T Consensus 292 ~L~~~~~~~~~~~~~~~~v~~L~~ll~~ 319 (529)
T 1jdh_A 292 NLTCNNYKNKMMVCQVGGIEALVRTVLR 319 (529)
T ss_dssp HHTTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHHc
Confidence 9988766667777767777777777764
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=180.64 Aligned_cols=217 Identities=12% Similarity=0.045 Sum_probs=179.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHH---hcCCHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCChHh
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLS---KLGGLSVLVGQLNHP-DTDIRKISAWILGKASQNNPLV 208 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~---~lGgl~~Li~lL~s~-~~~Ir~~Aa~vLg~~aqNNp~~ 208 (402)
++-++..|.+. +.+.+..|...|..++...+....|. ..|++|+|+.+|.++ +...+..|+|+|++++..++..
T Consensus 538 ip~Lv~LL~s~--~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~ 615 (810)
T 3now_A 538 VKALLRMALEG--TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESV 615 (810)
T ss_dssp HHHHHHHHHSS--CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHccC--CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHH
Confidence 34455556554 45778889999998886665554442 257999999999875 4455679999999999999999
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015709 209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (402)
Q Consensus 209 Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~-~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L 287 (402)
++.+++.|++|+|+.++.++++.++..|+++|+|++.+ +..+..|.. .|+++.|+.++.++ +..+|+.|+|+|++|
T Consensus 616 ~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~--d~~vq~~Aa~ALanL 692 (810)
T 3now_A 616 RQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDE--DEETATACAGALAII 692 (810)
T ss_dssp HHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCC--CHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999975 567888885 79999999999986 678999999999999
Q ss_pred hhcccccCCCCcchhHHh-CCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHH
Q 015709 288 AKCQLENMHKVEPPLFRD-RFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~l~~-~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~ 359 (402)
+.. ++.....+.+ .|+++.|+++|.++|.+++..|+.+|.+++..+.+.+..+.+.++++++...|+
T Consensus 693 t~~-----s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~ 760 (810)
T 3now_A 693 TSV-----SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQ 760 (810)
T ss_dssp HHH-----CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCC
T ss_pred hCC-----CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHh
Confidence 852 3456677777 899999999999999999999999999999877777777775555655544443
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.7e-17 Score=158.26 Aligned_cols=166 Identities=14% Similarity=0.021 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHh
Q 015709 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 266 (402)
Q Consensus 188 ~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~-LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~l 266 (402)
.+-|..|+..|..++.+ ......|.+.|++|+|+. +|+++++.+|..|+|+|++++.+++..++.+++.||++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 46789999999999975 557888999999999999 9999999999999999999999999999999999999999999
Q ss_pred hcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015709 267 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK 346 (402)
Q Consensus 267 L~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~ 346 (402)
|+++ .+..++++|+|+|++|+.+ ++.....|.+.|+++.|+.+|.+++..++..|+.+|.+|+...++.++.+.
T Consensus 133 L~~~-~~~~v~~~A~~ALsnl~~~-----~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv 206 (296)
T 1xqr_A 133 LDRD-ACDTVRVKALFAISCLVRE-----QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 206 (296)
T ss_dssp HHHC-SCHHHHHHHHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HccC-CCHHHHHHHHHHHHHHHcC-----CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 9964 2577999999999999953 445666788899999999999999999999999999999987666777777
Q ss_pred hcCCcHHHHHHHHH
Q 015709 347 DFCGLDTALERLRQ 360 (402)
Q Consensus 347 ~~~GL~~~L~~L~~ 360 (402)
+.+++.+++..|+.
T Consensus 207 ~~g~i~~Lv~LL~~ 220 (296)
T 1xqr_A 207 SMGMVQQLVALVRT 220 (296)
T ss_dssp HTTHHHHHHHHHTS
T ss_pred HcCCHHHHHHHHcC
Confidence 56667666666654
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.3e-16 Score=163.70 Aligned_cols=222 Identities=15% Similarity=0.163 Sum_probs=183.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
..+..++..|.+. .+.+.+..|+..|..+....++...+.+.|++++|+.+|+++++.+|..|+++|++++.+++..+.
T Consensus 56 ~~i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 134 (644)
T 2z6h_A 56 QMVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134 (644)
T ss_dssp HHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred ChHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence 3456667777754 367888999999999988888889999999999999999999999999999999999999888999
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.+.+.|++|.|++++++++..++..++.+|++++.+++.+...+.+.||++.|+.+|++.. ...++..++.+|.+|+.
T Consensus 135 ~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~- 212 (644)
T 2z6h_A 135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV- 212 (644)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTT-
T ss_pred HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHHHHhc-
Confidence 9999999999999999988888888999999999888999999999999999999999863 56788889999999974
Q ss_pred ccccCCCCcchhHHhCCcHHHHH---------------------------------------HhhcCCChHHHHHHHHHH
Q 015709 291 QLENMHKVEPPLFRDRFFLKSVV---------------------------------------DLTASADLDLQEKALAAI 331 (402)
Q Consensus 291 ~l~~~~~~~~~~l~~~g~v~~Lv---------------------------------------~lL~~~d~dv~E~aL~aL 331 (402)
.+..+..+.+.|+++.|+ .+|.+++.++++.++.+|
T Consensus 213 -----~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL 287 (644)
T 2z6h_A 213 -----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 287 (644)
T ss_dssp -----CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred -----CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345566666666655554 455556777888888888
Q ss_pred HHHhcCChhhHHHHHhcCCcHHHHHHHHH
Q 015709 332 KNLLQLRTTEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 332 ~~L~~~~~~~~~~~~~~~GL~~~L~~L~~ 360 (402)
.+|+......++.+.+.+++..++..|+.
T Consensus 288 ~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~ 316 (644)
T 2z6h_A 288 SNLTCNNYKNKMMVCQVGGIEALVRTVLR 316 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCHHHHHHHHHc
Confidence 88887765566666656677777777654
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-16 Score=164.77 Aligned_cols=196 Identities=15% Similarity=0.094 Sum_probs=162.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHhHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQK 210 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN-Np~~Q~ 210 (402)
+..++..|.+. +++.+..|...|..++. +.++...+...||+|+|+.+|.++++++|..|+|+|++++.+ |+.++.
T Consensus 50 i~~LV~~L~s~--~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 50 LPEVIAMLGFR--LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 44556677654 56788888899999884 677888999999999999999999999999999999999985 799999
Q ss_pred HHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc----------------CCCcc
Q 015709 211 QVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG----------------NSSFE 273 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s-~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~----------------s~~~d 273 (402)
.|++.|+||+|+++|++ .+.+++..|.+||.+|.. ++.+...+++ +|++.|++++. ....+
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence 99999999999999997 467888888888888876 5677777774 78999999872 01125
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCcchhHHh-CCcHHHHHHhhcC------CChHHHHHHHHHHHHHhcC
Q 015709 274 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD-RFFLKSVVDLTAS------ADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 274 ~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~-~g~v~~Lv~lL~~------~d~dv~E~aL~aL~~L~~~ 337 (402)
..++..|+++|.+|+.. ++..+..+++ .|+++.|+.+|.+ .+...+|.++.+|.+|...
T Consensus 206 ~~V~~nAa~~L~NLs~~-----~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~ 271 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSE-----RSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQ 271 (584)
T ss_dssp HHHHHHHHHHHHHHTSS-----CHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcC-----CHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcc
Confidence 78999999999999842 3455777776 5778899999874 4678999999999999865
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.3e-15 Score=161.34 Aligned_cols=221 Identities=16% Similarity=0.202 Sum_probs=179.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
.+..++..|.+.. +++.+..|+..|..+....++...+.+.|++++|+.+|+++++.+|..|+++|++++.+++..+..
T Consensus 193 ~i~~Lv~~L~~~~-d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 271 (780)
T 2z6g_A 193 MVSAIVRTMQNTN-DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271 (780)
T ss_dssp HHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred hHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 3444555565543 678899999999998888888888999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc
Q 015709 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~ 291 (402)
+.+.|+++.|+.++.+++..++..|+.+|.+++.+++.+...+.+.||++.|+.+|++.. +...+..++.++.+|+..
T Consensus 272 v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~~- 349 (780)
T 2z6g_A 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVC- 349 (780)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTS-
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcC-
Confidence 999999999999999988889999999999999889999999999999999999998763 444555666666666532
Q ss_pred cccCCCCcchhHHhC---------------------------------------CcHHHHHHhhcCCChHHHHHHHHHHH
Q 015709 292 LENMHKVEPPLFRDR---------------------------------------FFLKSVVDLTASADLDLQEKALAAIK 332 (402)
Q Consensus 292 l~~~~~~~~~~l~~~---------------------------------------g~v~~Lv~lL~~~d~dv~E~aL~aL~ 332 (402)
+..+..+.+. ++++.|+.+|.+++.++++.|+.+|.
T Consensus 350 -----~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~ 424 (780)
T 2z6g_A 350 -----SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 424 (780)
T ss_dssp -----TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2223333333 45667777777788899999999999
Q ss_pred HHhcCChhhHHHHHhcCCcHHHHHHHHH
Q 015709 333 NLLQLRTTEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 333 ~L~~~~~~~~~~~~~~~GL~~~L~~L~~ 360 (402)
+|+......+..+.+.+|+..++..|..
T Consensus 425 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 452 (780)
T 2z6g_A 425 NLTCNNYKNKMMVCQVGGIEALVRTVLR 452 (780)
T ss_dssp HHTSSCHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHHc
Confidence 9988776666667657777777777765
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-15 Score=152.37 Aligned_cols=221 Identities=18% Similarity=0.151 Sum_probs=179.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~ 212 (402)
+..++..+.+.+ ....+..+...|..+....++...+.+.|++++|+.++.++++.++..|+|+|++++.+.+.. .
T Consensus 187 i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~-- 262 (529)
T 1jdh_A 187 PQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-E-- 262 (529)
T ss_dssp HHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-S--
T ss_pred HHHHHHHHHhCC-hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh-H--
Confidence 344455555543 334555677778888888888899999999999999999999999999999999999876542 1
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhccc
Q 015709 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 292 (402)
Q Consensus 213 le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l 292 (402)
...|++|.|++++.++++.++..|+++|++++.+++...+.+.+.||++.|+.+|.+++.+..++..|+++|.+|+..
T Consensus 263 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~-- 340 (529)
T 1jdh_A 263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR-- 340 (529)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS--
T ss_pred HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC--
Confidence 124789999999999999999999999999999988899999999999999999986433467999999999999852
Q ss_pred ccCCCC---cchhHHhCCcHHHHHHhhcCCC-hHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhH
Q 015709 293 ENMHKV---EPPLFRDRFFLKSVVDLTASAD-LDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQ 363 (402)
Q Consensus 293 ~~~~~~---~~~~l~~~g~v~~Lv~lL~~~d-~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~ 363 (402)
++. .+..+.+.|.++.|+.+|.+++ ..++..++.+|.+++..+. .+..+.+.+++...+..|+....
T Consensus 341 ---~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~ 411 (529)
T 1jdh_A 341 ---HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQ 411 (529)
T ss_dssp ---STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ---CchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhH
Confidence 233 3567889999999999999886 5999999999999998765 45666656666777777765443
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.7e-15 Score=156.32 Aligned_cols=223 Identities=17% Similarity=0.167 Sum_probs=173.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH-------------------------------
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG------------------------------- 181 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~------------------------------- 181 (402)
+..++..+.+.. ..+.+..++..|..+....++...+.+.|++++|+.
T Consensus 184 v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 262 (644)
T 2z6h_A 184 PQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME 262 (644)
T ss_dssp HHHHHHHHTTCC-CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCH
T ss_pred hHHHHHHHHcCC-hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 344455555443 334455666666666666667777777776666655
Q ss_pred --------hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCChh--
Q 015709 182 --------QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLA-- 249 (402)
Q Consensus 182 --------lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~--~~vr~kAl~ALS~LiR~~~~-- 249 (402)
+|.++++++|..|+|+|++++.+++..+..+.+.|+++.|+.++.+.+ +.++..|+++|++++.+++.
T Consensus 263 ~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~ 342 (644)
T 2z6h_A 263 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 342 (644)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHH
Confidence 445577888999999999999988999999999999999999998643 78999999999999987653
Q ss_pred -cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC---------
Q 015709 250 -GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--------- 319 (402)
Q Consensus 250 -~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--------- 319 (402)
.+..++..||++.|+.+|.+++ +..++..|+++|++|+. ++..+..+.+.|+++.|+++|..+
T Consensus 343 ~~q~~v~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nLa~------~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~ 415 (644)
T 2z6h_A 343 MAQNAVRLHYGLPVVVKLLHPPS-HWPLIKATVGLIRNLAL------CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTS 415 (644)
T ss_dssp HHHHHHHHTTHHHHHHHTTSTTC-CHHHHHHHHHHHHHHTT------SGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHccChHHHHHHhCccC-chHHHHHHHHHHHHHcc------CHHHHHHHHHcCCHHHHHHHHhccchhhhhHhh
Confidence 4566889999999999999863 46799999999999985 345568888999999999998763
Q ss_pred -------------ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhHH
Q 015709 320 -------------DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQE 364 (402)
Q Consensus 320 -------------d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~~ 364 (402)
+.++++.++.+|.+|+... ..+..+.+.+++.+.+..|++...+
T Consensus 416 ~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~-~~~~~l~~~~~i~~Lv~lL~~~~~~ 472 (644)
T 2z6h_A 416 MGGTQQQFVEGVRMEEIVEGCTGALHILARDV-HNRIVIRGLNTIPLFVQLLYSPIEN 472 (644)
T ss_dssp --------CCSSCHHHHHHHHHHHHHHHTTSH-HHHHHHHHTTCHHHHHHHTTCSCHH
T ss_pred hccccchhcccccHHHHHHHHHHHHHHHhcCH-HHHHHHHhCCcHHHHHHHHcCCCHH
Confidence 3567889999999999875 5677787677887777777554433
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-14 Score=159.08 Aligned_cols=220 Identities=15% Similarity=0.063 Sum_probs=176.2
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCC-C-CHHHHHHHHHHHHHHhcCChH
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNH-P-DTDIRKISAWILGKASQNNPL 207 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~l~~lGgl~~Li~lL~s-~-~~~Ir~~Aa~vLg~~aqNNp~ 207 (402)
..+..++..+.+. +.+.+..|+..|.++.... ++...+.+.||++.|+.+|.+ + .+.+|..|+++|++++.+++.
T Consensus 399 ~~i~~Lv~lL~~~--d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~ 476 (780)
T 2z6g_A 399 GLLGTLVQLLGSD--DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQD 476 (780)
T ss_dssp HHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTT
T ss_pred hHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCch
Confidence 4555556666543 5678889999999988764 577889999999999999965 3 359999999999999988775
Q ss_pred ---hHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCc-----------
Q 015709 208 ---VQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF----------- 272 (402)
Q Consensus 208 ---~Q~~~le~g~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~----------- 272 (402)
.|..+.+.|++|.|+.+|.+++ ..++..|+|+|+++.++ +..+..+.+.|+++.|+.+|.+...
T Consensus 477 ~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~ 555 (780)
T 2z6g_A 477 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 555 (780)
T ss_dssp HHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccc
Confidence 4678899999999999999877 48999999999999985 5567888899999999999975311
Q ss_pred ---------cHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHH
Q 015709 273 ---------EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEAL 343 (402)
Q Consensus 273 ---------d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~ 343 (402)
+..++..++.+|.+|+. ++..+..+.+.|+++.|+.+|.+++.+++..++.+|.+|+... ..+.
T Consensus 556 nq~~~~~~~~~~v~~~a~~aL~~La~------~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~-~~~~ 628 (780)
T 2z6g_A 556 QQQFVEGVRMEEIVEACTGALHILAR------DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-EAAE 628 (780)
T ss_dssp --CCSTTCCHHHHHHHHHHHHHHHTT------SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSH-HHHH
T ss_pred cchhhcccChHHHHHHHHHHHHHHhc------ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH-HHHH
Confidence 12355667777777763 3456667889999999999999999999999999999998764 4667
Q ss_pred HHHhcCCcHHHHHHHHH
Q 015709 344 VLKDFCGLDTALERLRQ 360 (402)
Q Consensus 344 ~~~~~~GL~~~L~~L~~ 360 (402)
.+.+.+|+..+.+.+++
T Consensus 629 ~i~~~g~i~~L~~Ll~~ 645 (780)
T 2z6g_A 629 AIEAEGATAPLTELLHS 645 (780)
T ss_dssp HHHHTTCHHHHHHGGGC
T ss_pred HHHHCCCHHHHHHHHcC
Confidence 77766677666555443
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-12 Score=140.72 Aligned_cols=218 Identities=15% Similarity=0.188 Sum_probs=165.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHH---HHHHHHHHHHHHh-cCChH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTD---IRKISAWILGKAS-QNNPL 207 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~---Ir~~Aa~vLg~~a-qNNp~ 207 (402)
.+.-++..+.+. ++..+..|...|..+..+.++...+.+.||+++|+++|.+.... +|..|+++|+++. ..||.
T Consensus 458 vIp~Lv~Ll~S~--s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~ 535 (778)
T 3opb_A 458 LISFLKREMHNL--SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG 535 (778)
T ss_dssp HHHHHHHHGGGS--CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH
T ss_pred CHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH
Confidence 455555556553 57889999999999999999999999999999999999876544 8999999999998 45665
Q ss_pred hHHHHHH---cCcHHHHHHhhcC--CCH-----------HH-HHHHHHHHHHHhcCC----hhcHHHHHhc-CcHHHHHH
Q 015709 208 VQKQVLE---LGALSKLMKMVKS--SFV-----------EE-AVKALYTVSSLIRNN----LAGQEMFYVE-AGDLMLQD 265 (402)
Q Consensus 208 ~Q~~~le---~g~L~~Ll~LL~s--~~~-----------~v-r~kAl~ALS~LiR~~----~~~~~~f~~~-gGi~~L~~ 265 (402)
. .|-. .|++|+|+.||.. +.. .. +..|+.||.||+... ...+..++.+ |+++.|..
T Consensus 536 ~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~ 613 (778)
T 3opb_A 536 L--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN 613 (778)
T ss_dssp H--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred H--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH
Confidence 4 2211 3899999999983 111 12 668999999999875 2346667775 99999999
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcc-hhHHhC------CcHHHHHHhhcCCChHHHHHHHHHHHHHhc-C
Q 015709 266 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP-PLFRDR------FFLKSVVDLTASADLDLQEKALAAIKNLLQ-L 337 (402)
Q Consensus 266 lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~-~~l~~~------g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~-~ 337 (402)
+|.++ +..+|+.|+++++||+.+ ++.+ ..+... +-++.|+.++.++|.++|+.|..||.+++. .
T Consensus 614 LL~s~--n~~VrrAA~elI~NL~~~------~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~ 685 (778)
T 3opb_A 614 LMLDE--NVPLQRSTLELISNMMSH------PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI 685 (778)
T ss_dssp GGGCS--SHHHHHHHHHHHHHHHTS------GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHhCC--CHHHHHHHHHHHHHHhCC------cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99986 567999999999999953 3332 233222 237899999999999999999999999964 4
Q ss_pred ChhhHHHHHhcCCcHHHHHHHHHH
Q 015709 338 RTTEALVLKDFCGLDTALERLRQQ 361 (402)
Q Consensus 338 ~~~~~~~~~~~~GL~~~L~~L~~~ 361 (402)
+..++..++...|++..+..|+.+
T Consensus 686 ~~ia~~ll~~~~gi~~Ll~lL~~~ 709 (778)
T 3opb_A 686 PLIAKELLTKKELIENAIQVFADQ 709 (778)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHccccHHHHHHHHhcc
Confidence 434566665346788888888773
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.4e-12 Score=135.14 Aligned_cols=223 Identities=16% Similarity=0.111 Sum_probs=176.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC------------------chhHHH-hcCCHHHHHHhcCCCCHHHHH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPID------------------NANDLS-KLGGLSVLVGQLNHPDTDIRK 192 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD------------------nA~~l~-~lGgl~~Li~lL~s~~~~Ir~ 192 (402)
-|+..+.+|++...+.|--..+|+.|.++....+ ++..|. +-++++.|+.+|++++-.+|.
T Consensus 61 ~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~ 140 (651)
T 3grl_A 61 AMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRW 140 (651)
T ss_dssp THHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHH
T ss_pred hHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHH
Confidence 4888899998877777766778888877665432 233443 367899999999999999999
Q ss_pred HHHHHHHHHhcCChH-hHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015709 193 ISAWILGKASQNNPL-VQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (402)
Q Consensus 193 ~Aa~vLg~~aqNNp~-~Q~~~le~-g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (402)
+|..+|..++.++|. +|+.++.. +|++.|+.+|+++.+.+|-.|+..|++++++|+..|+.+.-.||++.|..++...
T Consensus 141 ~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~E 220 (651)
T 3grl_A 141 PGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEE 220 (651)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhc
Confidence 999999999999999 99999966 9999999999998899999999999999999999888888889999999999864
Q ss_pred Cc--cHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChH------HHH---HHHHHHHHHhcCCh
Q 015709 271 SF--EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLD------LQE---KALAAIKNLLQLRT 339 (402)
Q Consensus 271 ~~--d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~d------v~E---~aL~aL~~L~~~~~ 339 (402)
.. .-.+...++.++.+|+. .+++.+..|.+.|+++.|+.+|..++.. ... .++.++..|+..+.
T Consensus 221 g~~~Ggivv~DCL~ll~nLLr-----~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~ 295 (651)
T 3grl_A 221 GNSDGGIVVEDCLILLQNLLK-----NNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNN 295 (651)
T ss_dssp TGGGSHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTS
T ss_pred CCCccchhHHHHHHHHHHHHh-----cCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCC
Confidence 21 23578899999999995 4778899999999999999999865321 222 36666666766522
Q ss_pred ------hhHHHHHhcCCcHHHHHHHH
Q 015709 340 ------TEALVLKDFCGLDTALERLR 359 (402)
Q Consensus 340 ------~~~~~~~~~~GL~~~L~~L~ 359 (402)
.+...+.+.+++.++++.+.
T Consensus 296 ~~~~t~~nQ~~~~~~g~l~~Ll~ll~ 321 (651)
T 3grl_A 296 PPGATSSCQKAMFQCGLLQQLCTILM 321 (651)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHCCCHHHHHHHHc
Confidence 24455664555666655543
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-12 Score=137.97 Aligned_cols=168 Identities=12% Similarity=0.145 Sum_probs=135.6
Q ss_pred chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHH---HHHHHHHHHHH
Q 015709 166 NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE---EAVKALYTVSS 242 (402)
Q Consensus 166 nA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~---vr~kAl~ALS~ 242 (402)
|...+.+.|++++|+.+++++++.+|..|+|+|++++. ++.++..+++.|++++|+.++.+.+.. .|..|+.||++
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALAr 527 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTR 527 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999985 599999999999999999999987654 79999999999
Q ss_pred HhcCChhcHHHHHh---cCcHHHHHHhhcC-CCc-----------cHHHHHHHHHHHHHHhhcccccCC---CCcchhHH
Q 015709 243 LIRNNLAGQEMFYV---EAGDLMLQDILGN-SSF-----------EIRLHRKAVSLVGDLAKCQLENMH---KVEPPLFR 304 (402)
Q Consensus 243 LiR~~~~~~~~f~~---~gGi~~L~~lL~s-~~~-----------d~klq~kA~~lL~~L~~~~l~~~~---~~~~~~l~ 304 (402)
++-...+.. .|-. .|++++|+.+|.. +.. +..-+..|+.+|+||+.. .+ ++.+..++
T Consensus 528 Llis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~----~~n~~E~~r~~Ii 602 (778)
T 3opb_A 528 MLIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASS----ETSDGEEVCKHIV 602 (778)
T ss_dssp HHHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHC----CSHHHHHHHHHHH
T ss_pred HHhcCCHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcC----CcccchHHHHHHH
Confidence 885533322 3421 4999999999983 211 112367999999999963 11 13467677
Q ss_pred hC-CcHHHHHHhhcCCChHHHHHHHHHHHHHhcCCh
Q 015709 305 DR-FFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339 (402)
Q Consensus 305 ~~-g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 339 (402)
++ |+++.|.++|.+++..+|..|+.++++|+..++
T Consensus 603 ~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e 638 (778)
T 3opb_A 603 STKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL 638 (778)
T ss_dssp HSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG
T ss_pred HhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH
Confidence 75 999999999999999999999999999998653
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.8e-09 Score=112.98 Aligned_cols=217 Identities=17% Similarity=0.170 Sum_probs=174.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcC
Q 015709 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQN 204 (402)
Q Consensus 127 ~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s--~~~~Ir~~Aa~vLg~~aqN 204 (402)
++..+.+..+.+.+.+. .-.++|..|+..|..+..+ ...-+..+|++.|+..|+. .+.++-..+..+|.++...
T Consensus 17 qs~~etI~~L~~Rl~~~-tl~eDRR~Av~~Lk~~sk~---y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~ 92 (651)
T 3grl_A 17 HTEAETIQKLCDRVASS-TLLDDRRNAVRALKSLSKK---YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN 92 (651)
T ss_dssp -CHHHHHHHHHHHHHHC-CSHHHHHHHHHHHHHTTTT---TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred CChhhHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHH---hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 35678888888888874 4679999999999998754 2345557899999999954 6888889999999887766
Q ss_pred ChHh-----------------HHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-cHHHHHhc-CcHHHHH
Q 015709 205 NPLV-----------------QKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVE-AGDLMLQ 264 (402)
Q Consensus 205 Np~~-----------------Q~~~l-e~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~-~~~~f~~~-gGi~~L~ 264 (402)
++.. .+.|+ +.+.++.|+.+|++++-.+|..++-.|+.++.+++. .++.+..+ +|++.|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 5432 22343 458899999999998889999999999999999988 78888865 9999999
Q ss_pred HhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCCh----HHHHHHHHHHHHHhcCChh
Q 015709 265 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADL----DLQEKALAAIKNLLQLRTT 340 (402)
Q Consensus 265 ~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~----dv~E~aL~aL~~L~~~~~~ 340 (402)
.+|+++ ...+|-.|+.+|.+|+. .+++.++.+.-+|..+.|.+++..+.. -+.+.++..|.+|+.....
T Consensus 173 ~lL~d~--rE~iRneallLL~~Lt~-----~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s 245 (651)
T 3grl_A 173 DLLADS--REVIRNDGVLLLQALTR-----SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS 245 (651)
T ss_dssp GGGGCS--SHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhCc--hHHHHHHHHHHHHHHhc-----CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH
Confidence 999986 35699999999999995 466777777778999999999987543 7889999999999999876
Q ss_pred hHHHHHhcCCcHHH
Q 015709 341 EALVLKDFCGLDTA 354 (402)
Q Consensus 341 ~~~~~~~~~GL~~~ 354 (402)
....|++.+++..+
T Consensus 246 NQ~~FrEt~~i~~L 259 (651)
T 3grl_A 246 NQNFFKEGSYIQRM 259 (651)
T ss_dssp HHHHHHHTTCGGGG
T ss_pred HHHHHHHcCCHHHH
Confidence 77788855544433
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.9e-09 Score=114.49 Aligned_cols=169 Identities=12% Similarity=0.092 Sum_probs=135.1
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH-HhhcCCCHHHHHHHHHHHHHHhcC-ChhcHH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM-KMVKSSFVEEAVKALYTVSSLIRN-NLAGQE 252 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll-~LL~s~~~~vr~kAl~ALS~LiR~-~~~~~~ 252 (402)
.+.|+++.|+|++++.|..||++|+++++ ++..+..++..|++.+++ .+|.+++.++|..|++||.||+.+ .+....
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 56788899999999999999999999997 788999999999998876 578888899999999999999876 466677
Q ss_pred HHHhcCcHHHHHHhhcCCC------------cc-------HHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHH
Q 015709 253 MFYVEAGDLMLQDILGNSS------------FE-------IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 313 (402)
Q Consensus 253 ~f~~~gGi~~L~~lL~s~~------------~d-------~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 313 (402)
.++..|++++|..++++.. .. ..+...++.+|.+||.. +......+...+.++.++
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~-----s~~~~~~v~~~~~l~~l~ 188 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALA-----RDEIHEAVATKQTILRLL 188 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHTCHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhC-----CHHHHHHHHhcccHHHHH
Confidence 7889999999999985310 00 11233567788888853 345566777889999999
Q ss_pred HhhcCC---ChHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 015709 314 DLTASA---DLDLQEKALAAIKNLLQLRTTEALVLKDFC 349 (402)
Q Consensus 314 ~lL~~~---d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~ 349 (402)
.+|... ..+++..|+.+|..|..+.....+.+.+.+
T Consensus 189 ~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~ 227 (684)
T 4gmo_A 189 FRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQ 227 (684)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCC
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcc
Confidence 988543 468999999999999999877667776443
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.95 E-value=6.7e-08 Score=86.50 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHh
Q 015709 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV 208 (402)
Q Consensus 129 d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~ 208 (402)
+.......++.|.++ +++.+..|+..|..+-. -+.++.|+.+|+++++.+|..|+++|+.+.. +
T Consensus 12 ~~~~~~~~i~~L~~~--~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~-- 75 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDD--SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E-- 75 (201)
T ss_dssp CHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G--
T ss_pred CCcchHHHHHHhcCC--CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H--
Confidence 344555666777665 46788888888876432 2578999999999999999999999999863 2
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015709 209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 209 Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~ 288 (402)
.+++.|+.++.++++.+|..|+++|+.+- .+ ..++.|..+|.++ +..+|..|++++..+.
T Consensus 76 -------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~---------~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 76 -------RAVEPLIKALKDEDGWVRQSAAVALGQIG--DE---------RAVEPLIKALKDE--DWFVRIAAAFALGEIG 135 (201)
T ss_dssp -------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC--CG---------GGHHHHHHHTTCS--SHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cH---------HHHHHHHHHHcCC--CHHHHHHHHHHHHHhC
Confidence 57899999999988999999999999863 22 4677888889875 6789999999999874
Q ss_pred hcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 289 ~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
+ ...++.|..+|..++..++..++.+|..+
T Consensus 136 -------~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 136 -------D---------ERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp -------C---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -------C---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 1 35788899999999999999999999888
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.91 E-value=7e-08 Score=87.05 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=121.1
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 209 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q 209 (402)
.+.+..+++.|.++ +...+..|+..|..+-. -++++.|+.+|.++++.+|..|+++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~--~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDD--SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 34455566666644 56788888888876433 2578999999999999999999999999863
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 210 ~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
.++++.|+.++.++++.+|..|+++|+.+- . ...++.|..+|.++ +..+|..|+.+|..+.
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~- 140 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIG--D---------ERAVEPLIKALKDE--DWFVRIAAAFALGEIG- 140 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c---------HHHHHHHHHHHhCC--CHHHHHHHHHHHHHcC-
Confidence 257899999999888899999999999873 2 24677888888875 6778999999998874
Q ss_pred cccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 290 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
+ ...++.|..+|..+++.++..++.+|..+.
T Consensus 141 ------~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 141 ------D---------ERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp ------C---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred ------C---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 1 246788889998889999999999888874
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.2e-08 Score=87.22 Aligned_cols=151 Identities=15% Similarity=0.141 Sum_probs=121.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~ 212 (402)
+..+++.+.++ ++..+..|+..|..+-. -..++.|+.+|+++++.+|..|+++|+.+.. +
T Consensus 47 ~~~L~~~l~~~--~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~------ 106 (201)
T 3ltj_A 47 VEPLIKALKDE--DAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E------ 106 (201)
T ss_dssp HHHHHHHTTCS--SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G------
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H------
Confidence 44555666544 56778888888876432 2578999999999999999999999999853 2
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhccc
Q 015709 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 292 (402)
Q Consensus 213 le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l 292 (402)
.+++.|+.+++++++.+|..|+++|+.+- . ...++.|..++.++ +..+|..|+++|..+-.
T Consensus 107 ---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~~--- 167 (201)
T 3ltj_A 107 ---RAVEPLIKALKDEDWFVRIAAAFALGEIG--D---------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG--- 167 (201)
T ss_dssp ---GGHHHHHHHTTCSSHHHHHHHHHHHHHHT--C---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS---
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--C---------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc---
Confidence 47899999999989999999999999873 2 24678899999876 67899999999998741
Q ss_pred ccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 293 ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 293 ~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
...++.|..++..++..++..|..+|..+-
T Consensus 168 -------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 168 -------------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 236778888998899999999999988764
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.80 E-value=6.3e-08 Score=87.35 Aligned_cols=155 Identities=14% Similarity=0.122 Sum_probs=121.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
.+..+++.+.++ ++..+..|+..|..+-. -+.++.|+.+|+++++.+|..|+++|+.+..
T Consensus 51 ~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 110 (211)
T 3ltm_A 51 AVEPLIKALKDE--DAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------- 110 (211)
T ss_dssp GHHHHHHHTTCS--CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------
Confidence 344455666654 57788888888876532 3578999999999999999999999999863
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc
Q 015709 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~ 291 (402)
...++.|+.+++++++.+|..|+++|+.+- .+ ..++.|..+++++ +..+|..|+.+|..+..
T Consensus 111 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~---------~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~-- 172 (211)
T 3ltm_A 111 ---ERAVEPLIKALKDEDWFVRIAAAFALGEIG--DE---------RAVEPLIKALKDE--DGWVRQSAADALGEIGG-- 172 (211)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--CG---------GGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS--
T ss_pred ---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CH---------HHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc--
Confidence 257899999999999999999999999872 22 4678889999875 67899999999998741
Q ss_pred cccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 292 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 292 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
...++.|..++..+++.++..|..+|..+....
T Consensus 173 --------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 173 --------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp --------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred --------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 346778888999999999999999998887653
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.74 E-value=4.7e-08 Score=105.09 Aligned_cols=192 Identities=15% Similarity=0.086 Sum_probs=145.2
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhcC-ChHhHHHHH
Q 015709 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG-QLNHPDTDIRKISAWILGKASQN-NPLVQKQVL 213 (402)
Q Consensus 136 al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~-lL~s~~~~Ir~~Aa~vLg~~aqN-Np~~Q~~~l 213 (402)
.++.|.++ ++++|..|+..|.+++++..+...+.+.|++.+++. +|.+++.+||..|+++|++++.. .+.+...++
T Consensus 39 ll~~L~S~--~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~ 116 (684)
T 4gmo_A 39 VLKDLKSP--DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLY 116 (684)
T ss_dssp HHHHHSSS--CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHcCCC--CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHH
Confidence 44556554 467899999999999998888889999999998765 78999999999999999999986 588999999
Q ss_pred HcCcHHHHHHhhcCCC--------------H-------HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC-CC
Q 015709 214 ELGALSKLMKMVKSSF--------------V-------EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN-SS 271 (402)
Q Consensus 214 e~g~L~~Ll~LL~s~~--------------~-------~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s-~~ 271 (402)
..|++++|+.++++.. . .+...++++|.+++.++..+...+...++++.|+.+|.+ ..
T Consensus 117 ~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~ 196 (684)
T 4gmo_A 117 RLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADI 196 (684)
T ss_dssp HTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCC
T ss_pred HcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCC
Confidence 9999999999986411 1 123457788888888888888899999999999999853 22
Q ss_pred ccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHH---HHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 272 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK---SVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 272 ~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~---~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
....++..|+.+|+.|+. .++.....+.+.+... .+..+.+..+ ..+.-++..|.++.
T Consensus 197 ~~~~v~~~a~~~L~~ls~-----dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 197 APQDIYEEAISCLTTLSE-----DNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVF 257 (684)
T ss_dssp SCHHHHHHHHHHHHHHHT-----TCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhc-----cCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence 456799999999999984 3455666666665432 3333333333 33455566666653
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.73 E-value=6.1e-07 Score=84.36 Aligned_cols=121 Identities=10% Similarity=0.079 Sum_probs=82.5
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015709 183 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 262 (402)
Q Consensus 183 L~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~ 262 (402)
++++++.+|..|+++||.+...+|.... ..++.|+.+++++++.+|..|+++|+.+.. ...++.
T Consensus 100 ~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~ 163 (280)
T 1oyz_A 100 LNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPL 163 (280)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHH
Confidence 3566777777777777777655543322 346777777777777777777777776531 246777
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 263 L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
|..+++++ +..+|..|+++|..+.. + ...+++.|+.+|..+++.++..++.+|..+.
T Consensus 164 L~~~l~d~--~~~vr~~a~~aL~~~~~------~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 164 LINLLKDP--NGDVRNWAAFAININKY------D--------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHTCS--SHHHHHHHHHHHHHHTC------C--------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCC--CHHHHHHHHHHHHhhcc------C--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 88888765 55678888888877631 1 1245678888888888888888888888775
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.68 E-value=8.1e-07 Score=83.53 Aligned_cols=146 Identities=11% Similarity=0.048 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
++..+..++..|..+..... ...-..++.|+.+|+++++.+|..|+++||.+.. .++++.|+.++
T Consensus 104 ~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l 168 (280)
T 1oyz_A 104 SACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLL 168 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHH
Confidence 45666666666665432111 0112357888899999999999999999998753 25899999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 305 (402)
++++..+|..|+++|+.+..+.+ ..++.|..+++++ +..+|..|+++|..+. .
T Consensus 169 ~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~--~~~vR~~A~~aL~~~~----------------~ 221 (280)
T 1oyz_A 169 KDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK--NEEVRIEAIIGLSYRK----------------D 221 (280)
T ss_dssp TCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS--CHHHHHHHHHHHHHTT----------------C
T ss_pred cCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC--CHHHHHHHHHHHHHhC----------------C
Confidence 99999999999999998843332 3567889999876 6779999999998764 2
Q ss_pred CCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 306 RFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 306 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
...++.|+.+|..++ ++..++.+|..+.
T Consensus 222 ~~~~~~L~~~l~d~~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 222 KRVLSVLCDELKKNT--VYDDIIEAAGELG 249 (280)
T ss_dssp GGGHHHHHHHHTSSS--CCHHHHHHHHHHC
T ss_pred HhhHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence 357888999998754 8888888888774
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.1e-06 Score=76.89 Aligned_cols=174 Identities=10% Similarity=0.116 Sum_probs=129.0
Q ss_pred CCHHHHHHHHHHHHHccCCC-Cc-hhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHH
Q 015709 145 LSLEDSQRALQELLILVEPI-DN-ANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSK 220 (402)
Q Consensus 145 ~t~e~k~~AL~~L~~Lve~i-Dn-A~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp-~~Q~~~le~g~L~~ 220 (402)
.+-..|..|+..|..+++.. +. ..++.+ .++.|...| +.++..+|..|+.+++.++..-. .....+ ...+|.
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~--i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~--~~ilp~ 102 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGA--LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA--SACVPS 102 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHH--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHH--HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHH
Confidence 35688999999999988752 21 223333 366778888 48999999999999999996411 121211 237899
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCC--
Q 015709 221 LMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-- 298 (402)
Q Consensus 221 Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~-- 298 (402)
|+..+.+.+..+|..|..||.+++...+ ... -++.|...|+++ ++++|..++.+|..++.. ..+.
T Consensus 103 ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~-----ll~~l~~~l~~~--~~~vr~~~l~~l~~~l~~----~~~~~~ 169 (242)
T 2qk2_A 103 LLEKFKEKKPNVVTALREAIDAIYASTS--LEA-----QQESIVESLSNK--NPSVKSETALFIARALTR----TQPTAL 169 (242)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHH-----HHHHHHHHTTCS--CHHHHHHHHHHHHHHHTT----CCGGGC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHH-----HHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH----cCCCCc
Confidence 9999999889999999999999987643 222 356677788875 678999999999997642 1222
Q ss_pred cchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 299 EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 299 ~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
....+ ..+++.++.+|...+..+|..|..++..++..
T Consensus 170 ~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 170 NKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 22233 36899999999999999999999999998754
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=8.8e-06 Score=80.11 Aligned_cols=194 Identities=17% Similarity=0.102 Sum_probs=147.5
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-ccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015709 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLI-LVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 206 (402)
Q Consensus 128 ~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~-Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp 206 (402)
++......+++.|.+. +.+++..+|-.|.. +-++.+.|..|+..+|+..|+......+.+++.++..+++.+.-. .
T Consensus 115 sps~ra~~iiekL~~~--~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v 191 (339)
T 3dad_A 115 QLSVRVNAILEKLYSS--SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLF-V 191 (339)
T ss_dssp CHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS-H
T ss_pred CcHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhc-c
Confidence 4556778888888865 56889999999999 557899999999999999999999999999999999999999864 3
Q ss_pred HhHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhc-------Cc---HHHHHHhhcC-CCccH
Q 015709 207 LVQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE-------AG---DLMLQDILGN-SSFEI 274 (402)
Q Consensus 207 ~~Q~~~l-e~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~-------gG---i~~L~~lL~s-~~~d~ 274 (402)
.--+.++ ....|..|..++.+....+...|+.-|-+++-..+.+...+.++ .| ++.|+.+|++ ++.|.
T Consensus 192 ~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~ 271 (339)
T 3dad_A 192 DGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP 271 (339)
T ss_dssp HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH
T ss_pred ccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH
Confidence 3333444 44578899999998777887888888888887766555554432 23 8899999972 12478
Q ss_pred HHHHHHHHHHHHHhhcccccCCC----CcchhHHhCCcHHHHHHhhcCC--ChHHHHHH
Q 015709 275 RLHRKAVSLVGDLAKCQLENMHK----VEPPLFRDRFFLKSVVDLTASA--DLDLQEKA 327 (402)
Q Consensus 275 klq~kA~~lL~~L~~~~l~~~~~----~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~a 327 (402)
.++.+|+.+|..+.... .+. +....+.+.|+=..+..++++. |++++++.
T Consensus 272 elq~~amtLIN~lL~~a---pd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Ql 327 (339)
T 3dad_A 272 ELLVYTVTLINKTLAAL---PDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQL 327 (339)
T ss_dssp HHHHHHHHHHHHHHHHC---SSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC---CChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHHH
Confidence 89999999999988641 111 2344556677777777777765 66777663
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-05 Score=74.21 Aligned_cols=186 Identities=13% Similarity=0.150 Sum_probs=146.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHh-cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK-LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~-lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
....+++.|.+ .+..-+.++|..|++++...|-.-.... -.+++.++.++.++|..|-..|.+||+++..|.|-.-+
T Consensus 34 ~l~~L~~LL~d--kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 34 ALFLILELAGE--DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred HHHHHHHHHhc--cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 44445555544 3567899999999999988654443333 45899999999999999999999999999999998888
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.+.+ .+..|..++.+.++-.+..|.-.++.+ +--.+ . -+.+..|.+++.|+ +.++|.-+..++.+++..
T Consensus 112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~-~-----~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKL-QPLED-S-----KLVRTYINELVVSP--DLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCC-C-----HHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGG
T ss_pred HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcC-Ccccc-h-----HHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcc
Confidence 7775 468899999988888889999999988 22111 1 13467889999775 788999999999999864
Q ss_pred ccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 291 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
..+++... +++.-+.++|+++|+.+++.|+.++..+++.+
T Consensus 181 ---S~D~~i~~-----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 181 ---SADSGHLT-----LILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp ---CSSCCCGG-----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred ---cCCHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 34555554 34556788999999999999999999999874
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.39 E-value=3.2e-08 Score=83.68 Aligned_cols=120 Identities=10% Similarity=0.060 Sum_probs=88.5
Q ss_pred cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHH
Q 015709 173 LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252 (402)
Q Consensus 173 lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~ 252 (402)
-..++.++.+|+++++.+|..|+++|+.+.. + .++.|+.+++++++.+|..|+++|+.+- .+
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~--~~---- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNEDWRIRGAAAWIIGNFQ--DE---- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCSCHHHHHHHHHHHGGGC--SH----
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCCCHHHHHHHHHHHHhcC--CH----
Confidence 3467788899999999999999999987642 1 2689999999888999999999999863 22
Q ss_pred HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHH
Q 015709 253 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIK 332 (402)
Q Consensus 253 ~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~ 332 (402)
..++.|..+|+++ +..+|..|+++|..+.. ...++.|+.+|+.+|..++..|..+|.
T Consensus 73 -----~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~----------------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 73 -----RAVEPLIKLLEDD--SGFVRSGAARSLEQIGG----------------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp -----HHHHHHHHHHHHC--CTHHHHHHHHHHHHHCS----------------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred -----HHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc----------------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2477888888765 56789999999998741 245788899998889999999988775
Q ss_pred H
Q 015709 333 N 333 (402)
Q Consensus 333 ~ 333 (402)
.
T Consensus 130 ~ 130 (131)
T 1te4_A 130 T 130 (131)
T ss_dssp G
T ss_pred h
Confidence 4
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.35 E-value=4.6e-06 Score=85.36 Aligned_cols=172 Identities=11% Similarity=0.017 Sum_probs=120.2
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
+...+..+++.|..+....... +..-..++.++.+|++++..||..|+.+++.++..... .+.....+|.|+.++
T Consensus 415 ~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~ 489 (588)
T 1b3u_A 415 KWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMS 489 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHh
Confidence 3455666666666555432211 11112467778888888999999999999999875332 122345788888888
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 305 (402)
++.+..+|..++++++.++..... .++...-++.|..+++++ +..+|..+++++..++.. .+ ..+..
T Consensus 490 ~~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~----~~----~~~~~ 556 (588)
T 1b3u_A 490 GDPNYLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPI----LD----NSTLQ 556 (588)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHH---HHHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGG----SC----HHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhhCCCC--CchHHHHHHHHHHHHHHH----hc----hhhhH
Confidence 887888899999999998875432 233446778888888876 567899999999998853 11 22334
Q ss_pred CCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 306 RFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 306 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
..+++.+..++..+|.++|+.|..++..+.
T Consensus 557 ~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 557 SEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 567777778777779999999999888764
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-06 Score=95.62 Aligned_cols=175 Identities=14% Similarity=0.073 Sum_probs=122.8
Q ss_pred HHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC
Q 015709 150 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF 229 (402)
Q Consensus 150 k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~ 229 (402)
+..|...|..++.... ..+.. ..++.+..+++++++.+|..|++++|.++.+.+..-... -.+.+|.|+.++++++
T Consensus 338 r~~a~~~L~~la~~~~--~~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~~l~~~l~d~~ 413 (852)
T 4fdd_A 338 RKCSAAALDVLANVYR--DELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLSDKK 413 (852)
T ss_dssp HHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHcCCCC
Confidence 4455555555544322 12221 246677778889999999999999999998876432222 2467899999999989
Q ss_pred HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcH
Q 015709 230 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL 309 (402)
Q Consensus 230 ~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v 309 (402)
+.+|..|+|+|+.+....+.....-+-.+.++.|...|.++ +.++|..|++++.+++... .+...+.+ .+++
T Consensus 414 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~--~~~vr~~a~~aL~~l~~~~----~~~l~~~l--~~ll 485 (852)
T 4fdd_A 414 ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--NKRVQEAACSAFATLEEEA----CTELVPYL--AYIL 485 (852)
T ss_dssp HHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHH----GGGGGGGH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHh----hHhhHhHH--HHHH
Confidence 99999999999998875432111111235678888888775 6789999999999998642 22333433 4678
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 310 KSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 310 ~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
+.|+.+++..+......++.++..++.
T Consensus 486 ~~L~~~l~~~~~~~~~~~~~ai~~l~~ 512 (852)
T 4fdd_A 486 DTLVFAFSKYQHKNLLILYDAIGTLAD 512 (852)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 888888887777777777778877763
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.32 E-value=9e-06 Score=85.51 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=114.2
Q ss_pred HhHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015709 112 KRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190 (402)
Q Consensus 112 ~r~~~L~ea~~~l-~~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~I 190 (402)
+|.+-+++++-.+ .|.+-....-..++.+.++ +.+.|..+.-.+..+.+.. .++. .-.+..+.+.|+++++.+
T Consensus 29 ~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~--~~~~Krl~yl~l~~~~~~~---~e~~-~l~~n~l~kdL~~~n~~i 102 (591)
T 2vgl_B 29 KRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTD--NLELKKLVYLYLMNYAKSQ---PDMA-IMAVNSFVKDCEDPNPLI 102 (591)
T ss_dssp HHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSS--CHHHHHHHHHHHHHHHHHS---HHHH-HTTHHHHGGGSSSSSHHH
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcccC---chHH-HHHHHHHHHHcCCCCHHH
Confidence 3555566665443 3444334444555555443 4666766655666554421 1222 224667778899999999
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015709 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (402)
Q Consensus 191 r~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (402)
|..|..++|++. +|..... .+|.+.+++.+.++.+|.+|++|+..+.+.+|.... ..+.++.|..+|.++
T Consensus 103 r~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~~~l~~lL~d~ 172 (591)
T 2vgl_B 103 RALAVRTMGCIR--VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE---DQGFLDSLRDLIADS 172 (591)
T ss_dssp HHHHHHHHHTCC--SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH---HHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHcCC--hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc---cccHHHHHHHHhCCC
Confidence 999999999986 5654444 368899999999999999999999999998876433 346679999999875
Q ss_pred CccHHHHHHHHHHHHHHhhc
Q 015709 271 SFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 271 ~~d~klq~kA~~lL~~L~~~ 290 (402)
++.++..|+.++..++..
T Consensus 173 --d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 173 --NPMVVANAVAALSEISES 190 (591)
T ss_dssp --CHHHHHHHHHHHHHHTTS
T ss_pred --ChhHHHHHHHHHHHHHhh
Confidence 678999999999999853
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1e-05 Score=82.70 Aligned_cols=175 Identities=11% Similarity=0.022 Sum_probs=119.9
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
+++.|..|++.|..+++..... ...-..+|.+..+++++++.+|..|+.+++.++...+.- ......+|.+..++
T Consensus 177 ~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~ 251 (588)
T 1b3u_A 177 TPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAA 251 (588)
T ss_dssp CHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHc
Confidence 6788889999998888765432 223356788888999999999999999999999865531 22234788899999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 305 (402)
++++..+|..|+.+|+.++...++ ......-++.+..+++++ +..+|..|++.+..++.. ..+.......-
T Consensus 252 ~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~----~~~~~~~~~~~ 322 (588)
T 1b3u_A 252 EDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCEN----LSADCRENVIM 322 (588)
T ss_dssp TCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHT----SCTTTHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHH----hChhhhhhHHH
Confidence 888889999999999999875322 123345688899999875 677899999999998853 12221111112
Q ss_pred CCcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 306 RFFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 306 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
..+++.+..++..++..+|..++.+|..+
T Consensus 323 ~~l~p~l~~~l~d~~~~vR~~a~~~l~~l 351 (588)
T 1b3u_A 323 SQILPCIKELVSDANQHVKSALASVIMGL 351 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHHHHHTTGGGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 33445555555555555555555444443
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.25 E-value=2.5e-05 Score=82.12 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 147 LEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 147 ~e~k~~AL~~L~~Lve-~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
.+.|..++..+.++.- ..|. ..+++.+++++.+++..+|..+...+..++..+|+... -+++.|.+-+
T Consensus 27 ~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL 95 (591)
T 2vgl_B 27 KEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDC 95 (591)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHc
Confidence 4567677666665432 2222 23678899999999999999999999999887765432 2467888889
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 305 (402)
+++++.+|..|+.+|+++. .+.....+ ++.+..++.++ ++.+|.+|+.++..++.. +++ .+.+
T Consensus 96 ~~~n~~ir~~AL~~L~~i~--~~~~~~~l-----~~~l~~~L~d~--~~~VRk~A~~al~~i~~~-----~p~---~~~~ 158 (591)
T 2vgl_B 96 EDPNPLIRALAVRTMGCIR--VDKITEYL-----CEPLRKCLKDE--DPYVRKTAAVCVAKLHDI-----NAQ---MVED 158 (591)
T ss_dssp SSSSHHHHHHHHHHHHTCC--SGGGHHHH-----HHHHHHHSSCS--CHHHHHHHHHHHHHHHHS-----SCC---CHHH
T ss_pred CCCCHHHHHHHHHHHHcCC--hHHHHHHH-----HHHHHHHcCCC--ChHHHHHHHHHHHHHHhh-----Chh---hccc
Confidence 9989999999999999984 44433333 46788889875 688999999999999852 344 3334
Q ss_pred CCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCCh
Q 015709 306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339 (402)
Q Consensus 306 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 339 (402)
.++++.+..+|..+|+.++..|+.+|..+.....
T Consensus 159 ~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 159 QGFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999999999999987653
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.7e-05 Score=74.76 Aligned_cols=182 Identities=9% Similarity=0.042 Sum_probs=129.9
Q ss_pred CCHHHHHHHHHHHHH-ccCC-CCc---hhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCC--hHhH-HHHHHc
Q 015709 145 LSLEDSQRALQELLI-LVEP-IDN---ANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNN--PLVQ-KQVLEL 215 (402)
Q Consensus 145 ~t~e~k~~AL~~L~~-Lve~-iDn---A~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNN--p~~Q-~~~le~ 215 (402)
....+|..|++.|.. +++. .+. ..++... +..|...| +.++..+|..|+.+|+.++.+- +..+ ....
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~--~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~-- 103 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNL--LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS-- 103 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHH--HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH--
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccHHHH--HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH--
Confidence 367889999999999 8853 121 1223332 66777888 7899999999999999999642 2333 2222
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccC
Q 015709 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (402)
Q Consensus 216 g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~ 295 (402)
-.+|.++..+.+....++..+.+|+-+++.+.++....-.-..-++.|...|+++ ++++|..++.+|..++...
T Consensus 104 ~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~~---- 177 (249)
T 2qk1_A 104 LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TPQIRMECTQLFNASMKEE---- 177 (249)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHc----
Confidence 2689999999988899999999999998886532110000012456777888876 5789999999999988531
Q ss_pred CC--CcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 296 HK--VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 296 ~~--~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
.. ..........+++.+..++...+..+|+.|..++..+..
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 11 111122235799999999999999999999999998863
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.18 E-value=7.3e-06 Score=89.20 Aligned_cols=180 Identities=14% Similarity=0.082 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHh--cCCHHHHHHhc-----------CC-----------CCHHHHHHHHHHHHHH
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQL-----------NH-----------PDTDIRKISAWILGKA 201 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~--lGgl~~Li~lL-----------~s-----------~~~~Ir~~Aa~vLg~~ 201 (402)
+.+.+..|++.+..+++.....+.+.. -..++.++..+ .. ++-.+|..|+.+|+.+
T Consensus 269 ~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~l 348 (852)
T 4fdd_A 269 DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVL 348 (852)
T ss_dssp SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHH
Confidence 567788898888888875432221211 12356666665 22 2235799999999999
Q ss_pred hcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015709 202 SQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAV 281 (402)
Q Consensus 202 aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~ 281 (402)
+...+. .++. ..+|.+..++.+++..+|..|+++|++++.+.+.....+ -.+.++.|..+++++ ++.+|..|+
T Consensus 349 a~~~~~---~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~~l~~~l~d~--~~~Vr~~a~ 421 (852)
T 4fdd_A 349 ANVYRD---ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLSDK--KALVRSITC 421 (852)
T ss_dssp HHHHGG---GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHHHHHHHTTCS--SHHHHHHHH
T ss_pred HHhccH---HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHcCCC--CHHHHHHHH
Confidence 986552 2222 367888888988888999999999999998876533322 246789999999876 678999999
Q ss_pred HHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 282 SLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 282 ~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
|++..++.... ....... -.++++.+++.|..+++.+++.|+.+|.+++..
T Consensus 422 ~~l~~l~~~~~---~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 422 WTLSRYAHWVV---SQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHHTHHHHH---HSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---cchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 99999985310 0111111 136788899999888999999999999999854
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.11 E-value=9.4e-05 Score=73.12 Aligned_cols=199 Identities=15% Similarity=0.142 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCch---hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA---NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 206 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA---~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp 206 (402)
..++...+..+.+.+.+.+.|..|+..+..+++-+... ..+... .++.+..++.++++++|..++++++.++...+
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHF-IMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 249 (462)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHH-HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34666677777766446788888999888876543211 111111 35566677888999999999999999998765
Q ss_pred HhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh------------------hc---H----HHH-------
Q 015709 207 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL------------------AG---Q----EMF------- 254 (402)
Q Consensus 207 ~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~------------------~~---~----~~f------- 254 (402)
..-...+..+.++.++..+++.++.++..|+..++.+++... .. . ..+
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~ 329 (462)
T 1ibr_B 250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (462)
T ss_dssp GGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHH
Confidence 421111111556666666666667777777776666654310 00 0 000
Q ss_pred --------------------------H-------hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCC-cc
Q 015709 255 --------------------------Y-------VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-EP 300 (402)
Q Consensus 255 --------------------------~-------~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~-~~ 300 (402)
. -...++.+...++++ +.++|..|+++++.++.. ..+. ..
T Consensus 330 l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~----~~~~~~~ 403 (462)
T 1ibr_B 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEG----PEPSQLK 403 (462)
T ss_dssp TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSS----SCTTTTC
T ss_pred HHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcC----CcHHHHH
Confidence 0 001234444455554 577788888888887742 1111 22
Q ss_pred hhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 301 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 301 ~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
+.+ ..+++.++.+|..+++.+|..|+.+|..++..
T Consensus 404 ~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 404 PLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp TTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 222 56899999999999999999999999999864
|
| >3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.1e-05 Score=78.16 Aligned_cols=137 Identities=16% Similarity=0.209 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH--hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc--CcHHHHH
Q 015709 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG--QLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLM 222 (402)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~--lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~--g~L~~Ll 222 (402)
.+....||+.|+++.+++...-.|.... +..|-+ |..+..+.+|..|+++||.+-+|||.+-+.|.+. ..+..+.
T Consensus 42 ~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 3456789999999999999888887642 444444 4466788999999999999999999999988875 2233333
Q ss_pred ----HhhcC---CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 223 ----KMVKS---SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 223 ----~LL~s---~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
.++.. ....+++.-+++|..|+.+. ..| ...|+..|..++.....+..+|+|++.++.++..
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~----~~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTS----EDL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS----TTC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcCh----Hhh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 33322 23445667799999999874 234 3568889999887543367899999999998874
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00012 Score=77.50 Aligned_cols=180 Identities=15% Similarity=0.112 Sum_probs=126.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
...+.++.+.++ +.+.|.-..-.+..+.+.- .++.. -.+..|.+-|+++++.+|..|+++||++. +++.-
T Consensus 71 ~~~~vik~~~s~--~~~~Krl~Yl~~~~~~~~~---~e~~~-l~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~-- 140 (618)
T 1w63_A 71 GQLECLKLIASQ--KFTDKRIGYLGAMLLLDER---QDVHL-LMTNCIKNDLNHSTQFVQGLALCTLGCMG--SSEMC-- 140 (618)
T ss_dssp GHHHHHHHHHSS--SHHHHHHHHHHHHHHCCCC---HHHHH-HHHHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHHH--
T ss_pred hHHHHHHHHcCC--chHHHHHHHHHHHHHhCCC---cHHHH-HHHHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHHH--
Confidence 333444444433 4556655555566655432 22221 14667778889999999999999999998 34322
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc
Q 015709 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~ 291 (402)
...++.+.+++.+.++.+|.+|+.|+..+.+.+|.... +-++.|..+|.++ ++.++..|+.++..++..
T Consensus 141 ---~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~--d~~V~~~Al~~L~~i~~~- 209 (618)
T 1w63_A 141 ---RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEK--NHGVLHTSVVLLTEMCER- 209 (618)
T ss_dssp ---HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCC--CHHHHHHHHHHHHHHCCS-
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCC--CHhHHHHHHHHHHHHHHh-
Confidence 24678999999999999999999999999998886544 4556677888765 678999999999999842
Q ss_pred cccCCCCcchhHHhCCcHHHHHHhhcC---------------CChHHHHHHHHHHHHHhcCC
Q 015709 292 LENMHKVEPPLFRDRFFLKSVVDLTAS---------------ADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 292 l~~~~~~~~~~l~~~g~v~~Lv~lL~~---------------~d~dv~E~aL~aL~~L~~~~ 338 (402)
+++....+. .+++.++.+|.. .++-.|-.++.+|..+....
T Consensus 210 ----~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~ 265 (618)
T 1w63_A 210 ----SPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND 265 (618)
T ss_dssp ----HHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC
T ss_pred ----ChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC
Confidence 222222232 567777776652 47788888888888887654
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.94 E-value=7.8e-06 Score=68.76 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=72.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~ 255 (402)
++.|+.+|+++++.+|..|+++||.+.. + .+++.|+.+++++++.+|..|+++|+.+- .
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--~-------- 102 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLEDDSGFVRSGAARSLEQIG--G-------- 102 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC--S--------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c--------
Confidence 7899999999999999999999999863 2 35899999999888999999999999873 2
Q ss_pred hcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015709 256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (402)
Q Consensus 256 ~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~ 286 (402)
..+++.|..+++++ +..+|..|+.+|..
T Consensus 103 -~~a~~~L~~~l~d~--~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 -ERVRAAMEKLAETG--TGFARKVAVNYLET 130 (131)
T ss_dssp -HHHHHHHHHHTTSC--CTHHHHHHHHHGGG
T ss_pred -HHHHHHHHHHHhCC--CHHHHHHHHHHHHh
Confidence 23578889999865 56788888887653
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=97.92 E-value=6.8e-05 Score=80.61 Aligned_cols=180 Identities=16% Similarity=0.202 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHhhcC
Q 015709 149 DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS 227 (402)
Q Consensus 149 ~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp-~~Q~~~le~g~L~~Ll~LL~s 227 (402)
.|..|...|..+++... ..+.. ..++.+...|.++++.+|..|++++|.++.+.+ ..-...+ ...+|.|+..+++
T Consensus 344 ~r~~a~~~l~~l~~~~~--~~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d 419 (876)
T 1qgr_A 344 PCKAAGVCLMLLATCCE--DDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKD 419 (876)
T ss_dssp HHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHCc--HhhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCC
Confidence 45566666665554322 11211 245566677888999999999999999998764 3222233 3479999999998
Q ss_pred CCHHHHHHHHHHHHHHhcCChhcH--HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhccccc----------C
Q 015709 228 SFVEEAVKALYTVSSLIRNNLAGQ--EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN----------M 295 (402)
Q Consensus 228 ~~~~vr~kAl~ALS~LiR~~~~~~--~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~----------~ 295 (402)
++..+|..|+++|+.++...++.. ..+ -...++.|...+.+ +.+++..|++++.+++...... .
T Consensus 420 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~---~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~ 495 (876)
T 1qgr_A 420 PSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSA---EPRVASNVCWAFSSLAEAAYEAADVADDQEEPA 495 (876)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTS---CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 889999999999999998765421 111 12456777788876 3678999999999998641000 0
Q ss_pred CCCcchhHHhCCcHHHHHHhhcCC---ChHHHHHHHHHHHHHhcCC
Q 015709 296 HKVEPPLFRDRFFLKSVVDLTASA---DLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 296 ~~~~~~~l~~~g~v~~Lv~lL~~~---d~dv~E~aL~aL~~L~~~~ 338 (402)
.....+.+ ..+++.|..++... +..++..++.++..++...
T Consensus 496 ~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~ 539 (876)
T 1qgr_A 496 TYCLSSSF--ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS 539 (876)
T ss_dssp CCSSTTTH--HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTC
T ss_pred chhhhHhH--HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHC
Confidence 01123333 35778888888764 3578888999998887653
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00013 Score=82.54 Aligned_cols=192 Identities=10% Similarity=0.077 Sum_probs=133.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015709 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (402)
Q Consensus 134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn-A~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~ 212 (402)
..+++.+.++ +.+.|..|+..|...+..--. ...-..-..++.|+..|.++++.+|..|+.+|+.++...+.. .
T Consensus 9 ~~lL~~l~s~--d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~---~ 83 (1230)
T 1u6g_C 9 SNLLEKMTSS--DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---Q 83 (1230)
T ss_dssp HHHHHHTTCS--SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH---H
T ss_pred HHHHHhcCCC--CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH---H
Confidence 3444444443 567888888888776543100 000111135778889999999999999999999999876541 1
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc-----HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015709 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-----QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (402)
Q Consensus 213 le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~-----~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L 287 (402)
+ ...++.|+..+.++++.+|..|..+|+.++...++. .....-..-++.|...+.+. .+..++..|+.++..+
T Consensus 84 ~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~-~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 84 V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSVQLEALDIMADM 161 (1230)
T ss_dssp H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHH
Confidence 1 235788888888888888999999999998775542 11112235678888888742 3678999999999999
Q ss_pred hhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 288 AKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
+.. ......+.+ ..+++.+...|..++..+|+.|+.+|..++...
T Consensus 162 ~~~----~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~ 206 (1230)
T 1u6g_C 162 LSR----QGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC 206 (1230)
T ss_dssp HHH----TCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC
T ss_pred HHH----hHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc
Confidence 853 122222222 357778888888889999999999999998764
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=97.90 E-value=9.7e-05 Score=79.21 Aligned_cols=181 Identities=8% Similarity=0.095 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHhhc
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVK 226 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp-~~Q~~~le~g~L~~Ll~LL~ 226 (402)
..+..|.+.|..+..... ..+.. ..++.+...+++++..+|..|++++|.++.... ..-...+. ..++.|+..+.
T Consensus 346 ~~r~~a~~~L~~l~~~~~--~~~~~-~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~ 421 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQNCG--NHILE-PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMN 421 (861)
T ss_dssp HHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGG
T ss_pred cHHHHHHHHHHHHHHHcc--HhHHH-HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcC
Confidence 455666666666554332 11111 235556667788899999999999999997642 32222332 47899999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhcH--HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccC-CCCcchhH
Q 015709 227 SSFVEEAVKALYTVSSLIRNNLAGQ--EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM-HKVEPPLF 303 (402)
Q Consensus 227 s~~~~vr~kAl~ALS~LiR~~~~~~--~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~-~~~~~~~l 303 (402)
++++.+|..++|+|+.++...++.. ..+ -...++.|...++++ ++++..|++++.+++..-. .. .....+.+
T Consensus 422 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~-~~~~~~l~~~~ 496 (861)
T 2bpt_A 422 DQSLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQDH---PKVATNCSWTIINLVEQLA-EATPSPIYNFY 496 (861)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHS-SSSSCGGGGGH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHhcc-cccchhhHHHH
Confidence 8889999999999999887643210 111 123467788888763 6899999999999986310 00 11222333
Q ss_pred HhCCcHHHHHHhhcCCC--hHHHHHHHHHHHHHhcCCh
Q 015709 304 RDRFFLKSVVDLTASAD--LDLQEKALAAIKNLLQLRT 339 (402)
Q Consensus 304 ~~~g~v~~Lv~lL~~~d--~dv~E~aL~aL~~L~~~~~ 339 (402)
..+++.++.++...| .+++..++.++..++....
T Consensus 497 --~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 497 --PALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp --HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcc
Confidence 356788888888644 7899999999999987643
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00019 Score=76.97 Aligned_cols=195 Identities=13% Similarity=0.171 Sum_probs=126.0
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC--chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHh
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID--NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV 208 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD--nA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~ 208 (402)
.+|..+.+.+.+. +...|..|+..|..+++... .-..+.. ..++.|+..++++++.+|..|+|++|.++..-+..
T Consensus 369 ~l~~~l~~~l~~~--~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 445 (861)
T 2bpt_A 369 PVLEFVEQNITAD--NWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAES 445 (861)
T ss_dssp HHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCC--ChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhh
Confidence 3444444555543 46789999999999987653 1112211 35788889999999999999999999998642210
Q ss_pred --HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh----hcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015709 209 --QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL----AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 209 --Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~----~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
...++ ...+|.|+..++++ +.++..|+++|++++.+.. .....++ ..-++.|..++.+...+..+|..++.
T Consensus 446 ~~~~~~~-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~d~~~~vr~~a~~ 522 (861)
T 2bpt_A 446 IDPQQHL-PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-PALVDGLIGAANRIDNEFNARASAFS 522 (861)
T ss_dssp SCTTTTH-HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred cCCHHHH-HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-HHHHHHHHHHHhCcCcchHHHHHHHH
Confidence 00011 24678899889775 8899999999999987632 2122222 23467888888754334568889999
Q ss_pred HHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcC---------------CChHHHHHHHHHHHHHhcC
Q 015709 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS---------------ADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 283 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~---------------~d~dv~E~aL~aL~~L~~~ 337 (402)
++..++.. ......+.+. .+++.+++.|.. ...+++..++.+|..++..
T Consensus 523 al~~l~~~----~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~ 586 (861)
T 2bpt_A 523 ALTTMVEY----ATDTVAETSA--SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRK 586 (861)
T ss_dssp HHHHHHHH----CCGGGHHHHH--HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----cchhhHHHHH--HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999864 1222222222 355556655542 1345677788777777653
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00012 Score=72.28 Aligned_cols=155 Identities=8% Similarity=0.037 Sum_probs=107.6
Q ss_pred CCHHHHHHhcCCC--CHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCh
Q 015709 174 GGLSVLVGQLNHP--DTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNL 248 (402)
Q Consensus 174 Ggl~~Li~lL~s~--~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s~--~~~vr~kAl~ALS~LiR~~~ 248 (402)
+.++.|+..+.++ ++.+|..|+.+++.++... +..-..... ..++.++.++.++ +..+|..|+.++++++....
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN-EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH-HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3566777788787 8999999999999999754 332121221 3788899999987 68899999999999765433
Q ss_pred hcHH--HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHH
Q 015709 249 AGQE--MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK 326 (402)
Q Consensus 249 ~~~~--~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~ 326 (402)
.... .+.. --++.|...+.++ +..+|..++.++..++... .....+.+ ..++++.++..+...+.+++..
T Consensus 207 ~~~~~~~~~~-~l~~~l~~~~~~~--~~~vr~~~~~~l~~l~~~~----~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~ 278 (462)
T 1ibr_B 207 ANFDKESERH-FIMQVVCEATQCP--DTRVRVAALQNLVKIMSLY----YQYMETYM-GPALFAITIEAMKSDIDEVALQ 278 (462)
T ss_dssp HHHTSHHHHH-HHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHC----GGGCTTTT-TTTHHHHHHHHHHCSSHHHHHH
T ss_pred HhhhhhHHHH-HHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHcCCchHHHHH
Confidence 2111 1111 1245556666654 6789999999999998531 11122222 1267888888888889999999
Q ss_pred HHHHHHHHhcC
Q 015709 327 ALAAIKNLLQL 337 (402)
Q Consensus 327 aL~aL~~L~~~ 337 (402)
++.++..++..
T Consensus 279 a~~~l~~~~~~ 289 (462)
T 1ibr_B 279 GIEFWSNVCDE 289 (462)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888754
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00064 Score=63.88 Aligned_cols=149 Identities=14% Similarity=0.202 Sum_probs=119.5
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
.+..|+.+|...++.++.+|..+|..+-..-|..-....=...++.++.++.+.+..+..+|+-+|..++.+.|..-+.|
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 35567778888899999999999999998755555544445689999999999999999999999999999999888888
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
.. -...|.++++++ +.-++..|+-.+.-|-. ..+ ..+++..+..++.++|..++..++.++.++
T Consensus 114 ~K--l~~aL~dlik~~--~~il~~eaae~Lgklkv-----~~~-------~~~V~~~l~sLl~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 114 LK--AAKTLVSLLESP--DDMMRIETIDVLSKLQP-----LED-------SKLVRTYINELVVSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp HH--HHHHHHHHTTSC--CHHHHHHHHHHHHHCCB-----SCC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHhcCC--CchHHHHHHHHhCcCCc-----ccc-------hHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 64 346778888866 45588888888887621 111 235677888899999999999999999999
Q ss_pred hcCCh
Q 015709 335 LQLRT 339 (402)
Q Consensus 335 ~~~~~ 339 (402)
+..++
T Consensus 178 a~~S~ 182 (265)
T 3b2a_A 178 LNSSA 182 (265)
T ss_dssp GGGCS
T ss_pred hcccC
Confidence 98653
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0011 Score=75.02 Aligned_cols=199 Identities=14% Similarity=0.121 Sum_probs=136.3
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHh-
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV- 208 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~- 208 (402)
...+..+++.+.+ .+.+.|..|+..|..+++.... ..+. ..++.|+..|.++++.+|..|+.+|+.++..-+..
T Consensus 47 ~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~~~~~-~~~~--~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~ 121 (1230)
T 1u6g_C 47 RKVVKMILKLLED--KNGEVQNLAVKCLGPLVSKVKE-YQVE--TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS 121 (1230)
T ss_dssp HHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHTTSCH-HHHH--HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhCCH-HHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcc
Confidence 3667778888874 3678899999999998876543 2222 24677788888899999999999999999764432
Q ss_pred -----HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015709 209 -----QKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 209 -----Q~~~le~g~L~~Ll~LL~-s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
+.... ...+|.|+..+. +++..++..|+.+++.++..++.....+. ..-++.|...|.++ +..+|..|+.
T Consensus 122 ~~~~~~~~~~-~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~--~~~vR~~a~~ 197 (1230)
T 1u6g_C 122 SGSALAANVC-KKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSP--RLAVRKRTII 197 (1230)
T ss_dssp --CCTHHHHH-HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCS--SHHHHHHHHH
T ss_pred cccchHHHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCC--cHHHHHHHHH
Confidence 12222 347899999998 46788999999999999875443222211 23566777778775 5678999999
Q ss_pred HHHHHhhcccc---------------cC-CCCcch---------------hHH--hCCcHHHHHHhhcCCChHHHHHHHH
Q 015709 283 LVGDLAKCQLE---------------NM-HKVEPP---------------LFR--DRFFLKSVVDLTASADLDLQEKALA 329 (402)
Q Consensus 283 lL~~L~~~~l~---------------~~-~~~~~~---------------~l~--~~g~v~~Lv~lL~~~d~dv~E~aL~ 329 (402)
++..++....+ .. +...+. .+. -..+++.+...+..+++++++.++.
T Consensus 198 al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~ 277 (1230)
T 1u6g_C 198 ALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQ 277 (1230)
T ss_dssp HHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99988753100 00 001110 000 0356777777788788899999999
Q ss_pred HHHHHhcC
Q 015709 330 AIKNLLQL 337 (402)
Q Consensus 330 aL~~L~~~ 337 (402)
++..++..
T Consensus 278 ~l~~l~~~ 285 (1230)
T 1u6g_C 278 AFESFVRR 285 (1230)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99888765
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00088 Score=61.62 Aligned_cols=147 Identities=8% Similarity=0.100 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHccCCCCchhHHHh--cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015709 130 AQLIQIAIDDLN-NSTLSLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 206 (402)
Q Consensus 130 ~~lMk~al~~L~-~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~--lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp 206 (402)
.+++......+. ++ ....+..|+..|..++.... ..|.. -.-+++|+..+.++++.+|..|+.++.+++.+.+
T Consensus 55 ~~i~~~L~~~l~kd~--~~~V~~~a~~~l~~la~~l~--~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~ 130 (242)
T 2qk2_A 55 GALVSALKKVITKDS--NVVLVAMAGKCLALLAKGLA--KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS 130 (242)
T ss_dssp HHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHG--GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC
Confidence 355666666664 43 56778889999988886442 22332 2368899999999999999999999999998654
Q ss_pred HhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc--HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015709 207 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG--QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV 284 (402)
Q Consensus 207 ~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~--~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL 284 (402)
.. ..+|.|+..+++.++.+|..++..|+.++..+.+. ....+ ..-++.|..+|.++ +.++|..|..++
T Consensus 131 -~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l-~~l~p~l~~~l~D~--~~~VR~~A~~~l 200 (242)
T 2qk2_A 131 -LE------AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL-KLLTTSLVKTLNEP--DPTVRDSSAEAL 200 (242)
T ss_dssp -HH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH-HHHHHHHHHHHTSS--CHHHHHHHHHHH
T ss_pred -HH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH-HHHHHHHHHHhcCC--ChHHHHHHHHHH
Confidence 21 25788999999988999999999999977665322 12222 35788899999875 678999999999
Q ss_pred HHHhhc
Q 015709 285 GDLAKC 290 (402)
Q Consensus 285 ~~L~~~ 290 (402)
..++..
T Consensus 201 ~~l~~~ 206 (242)
T 2qk2_A 201 GTLIKL 206 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998853
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00072 Score=72.60 Aligned_cols=200 Identities=15% Similarity=0.083 Sum_probs=135.3
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCch--hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA--NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL 207 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA--~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~ 207 (402)
..++...+..+.+++.+.+.+..|+..|..++..+... ........++.+..++.++++++|..|+++++.++...++
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 34555566666666446788889999998877644311 1111112466677788888999999999999999998876
Q ss_pred hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc-----------------HHHHHh---cCcHHHHHHhh
Q 015709 208 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-----------------QEMFYV---EAGDLMLQDIL 267 (402)
Q Consensus 208 ~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~-----------------~~~f~~---~gGi~~L~~lL 267 (402)
.-...+....++.++..+.+.++.++..|+..++.+++..... ...+.. ..-++.+...+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 5344444478899999888888899999999999887642100 000100 12345566666
Q ss_pred cCC-----CccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 268 GNS-----SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 268 ~s~-----~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
... ..+.++|..|+.++..++..- . +.+. ..+++.+...+.+++..+|+.++.++..++...
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~----~----~~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~ 397 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCC----E----DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP 397 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHH----G----GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHC----c----HhhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCC
Confidence 421 124467888999999887531 1 1122 256777788888889999999999999998753
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0012 Score=69.69 Aligned_cols=169 Identities=11% Similarity=-0.014 Sum_probs=128.3
Q ss_pred HhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCc
Q 015709 139 DLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGA 217 (402)
Q Consensus 139 ~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~ 217 (402)
.|++++ ...|..++..|.++.- ..|. .-|+..+++++.+++..+|....-.+...+..+|+.-.. +
T Consensus 42 ~l~~~~--~~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~ 108 (618)
T 1w63_A 42 SFREED--NTYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----M 108 (618)
T ss_dssp HHTTTC--TTTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----H
T ss_pred HhhCCC--HHHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----H
Confidence 444442 3457777777776442 2332 237888889999999999999999999999888754332 4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCC
Q 015709 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 297 (402)
Q Consensus 218 L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~ 297 (402)
+..|.+-++++++.+|.-|+.+||++. .+... ...++.+..+|.++ ++.+|++|+.++..+... ++
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~-----~~l~~~l~~~L~~~--~~~VRk~A~~al~~l~~~-----~p 174 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMG--SSEMC-----RDLAGEVEKLLKTS--NSYLRKKAALCAVHVIRK-----VP 174 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHHH-----HHHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHH-----CG
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHHH-----HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHH-----Ch
Confidence 677888888888999999999999985 23211 24567888889876 678999999999999853 34
Q ss_pred CcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCCh
Q 015709 298 VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339 (402)
Q Consensus 298 ~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 339 (402)
+.. .++++.+..+|...|+.++-.|+.+|..+....+
T Consensus 175 ~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~ 211 (618)
T 1w63_A 175 ELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP 211 (618)
T ss_dssp GGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHH
T ss_pred HHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhCh
Confidence 332 2688888999999999999999999999987643
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0037 Score=66.25 Aligned_cols=175 Identities=15% Similarity=0.034 Sum_probs=130.3
Q ss_pred HHhh-cCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015709 138 DDLN-NSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (402)
Q Consensus 138 ~~L~-~~~~t~e~k~~AL~~L~~Lve-~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~ 215 (402)
..++ ++..+...|..++..+.++.- ..|. .-|+..+++++.+++..+|..+.-.+...+..+|+.-..
T Consensus 42 ~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~------s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L---- 111 (621)
T 2vgl_A 42 SKFKGDKALDGYSKKKYVCKLLFIFLLGHDI------DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL---- 111 (621)
T ss_dssp HHHHSSSCCCHHHHHHHHHHHHHHHHHSCCC------CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH----
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHcCCCC------chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH----
Confidence 3444 334567788888877776542 2221 247899999999999999999999999999988754322
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccC
Q 015709 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (402)
Q Consensus 216 g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~ 295 (402)
++..+.+=++++++-+|.-|+.+||++. .+.-.+ .-++.+..+|.+.+.++.+|++|+.++..+...
T Consensus 112 -~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~----- 178 (621)
T 2vgl_A 112 -INNAIKNDLASRNPTFMGLALHCIANVG--SREMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT----- 178 (621)
T ss_dssp -HHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-----
T ss_pred -HHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-----
Confidence 3566777777888999999999999983 343222 345677888822223788999999999999852
Q ss_pred CCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 296 ~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
+|+..+ ..++++.+.++|...|+.++..|+.++..++...
T Consensus 179 ~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 179 SPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp CGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred ChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 333322 2589999999999889999999999999998754
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0036 Score=61.54 Aligned_cols=154 Identities=14% Similarity=0.092 Sum_probs=119.3
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh-
Q 015709 178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV- 256 (402)
Q Consensus 178 ~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~- 256 (402)
.++.-|.+.+..-+..|..-|..+.|..+..-..|++.+|+..|+++..+.+.+...-++.|+.++.- +..+...++.
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~Gm~gvvs~ 200 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHHHHHHHHHC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccccccchhCC
Confidence 44555556677778899999999777777778889999999999999999888999999999999874 6777877775
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh----------CCcHHHHHHhhc---CCChHH
Q 015709 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD----------RFFLKSVVDLTA---SADLDL 323 (402)
Q Consensus 257 ~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~----------~g~v~~Lv~lL~---~~d~dv 323 (402)
...+..|..++.+. +..+.+.|+.+|..++.. .+.....+.+ .-....|+.+|. +.|.++
T Consensus 201 ~~fI~~lyslv~s~--~~~V~k~AL~LL~v~V~~-----se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~el 273 (339)
T 3dad_A 201 SDTIQWLYTLCASL--SRLVVKTALKLLLVFVEY-----SENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPEL 273 (339)
T ss_dssp HHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHH
T ss_pred HHHHHHHHHHHcCc--cHHHHHHHHHHHHHHHcc-----CcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHH
Confidence 35778888888863 678899999999999864 2222222221 123678999997 679999
Q ss_pred HHHHHHHHHHHhcCCh
Q 015709 324 QEKALAAIKNLLQLRT 339 (402)
Q Consensus 324 ~E~aL~aL~~L~~~~~ 339 (402)
+..++..+-.++...+
T Consensus 274 q~~amtLIN~lL~~ap 289 (339)
T 3dad_A 274 LVYTVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999988888776643
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0049 Score=61.23 Aligned_cols=185 Identities=11% Similarity=0.078 Sum_probs=125.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015709 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN 205 (402)
Q Consensus 127 ~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN 205 (402)
++....++++ ..++++..++.-+..++..+.++.-.= +..... -...+..+++++.+++..+|...--.+-.++..+
T Consensus 22 ~~k~~v~qe~-r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e-~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~ 99 (355)
T 3tjz_B 22 LEKSAVLQEA-RVFNETPINPRKCAHILTKILYLINQGEHLGTTE-ATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA 99 (355)
T ss_dssp CCHHHHHHHG-GGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS
T ss_pred chHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH
Confidence 3444555553 566666666555455666666655332 211111 1234566788889999999998888888887653
Q ss_pred hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015709 206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (402)
Q Consensus 206 p~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~ 285 (402)
+ +.++ +...|.+=++++++-+|..|+.+++++.- +.-.+. ..+.+.++|.+. ++.+|++|+....
T Consensus 100 ~---e~iL---v~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~-----l~~~lk~~L~d~--~pyVRk~A~l~~~ 164 (355)
T 3tjz_B 100 E---DVII---VTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA-----IERYMKQAIVDK--VPSVSSSALVSSL 164 (355)
T ss_dssp S---CGGG---GHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHH
T ss_pred H---HHHH---HHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH-----HHHHHHHHcCCC--CHHHHHHHHHHHH
Confidence 3 3332 56777788888888889999999998842 232222 345678888876 6778999999998
Q ss_pred HHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 286 DLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 286 ~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
.|+. ..| .+++ +|+..+-+++...++-++-+|+.+|..+....
T Consensus 165 kL~~-----~~p----e~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 165 HLLK-----CSF----DVVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp HHTT-----TCH----HHHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHhc-----cCH----HHHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 8873 122 2333 68889999998889999988888888887643
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0052 Score=57.87 Aligned_cols=180 Identities=12% Similarity=0.039 Sum_probs=118.6
Q ss_pred CHHHHHHHHHHHHHccCCCCc--h--hHHHhcCCHHHH-HHhcCCCCHHHHHHHHHHHHHHhcCChH-----hHHHHHHc
Q 015709 146 SLEDSQRALQELLILVEPIDN--A--NDLSKLGGLSVL-VGQLNHPDTDIRKISAWILGKASQNNPL-----VQKQVLEL 215 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDn--A--~~l~~lGgl~~L-i~lL~s~~~~Ir~~Aa~vLg~~aqNNp~-----~Q~~~le~ 215 (402)
.=..|..|++.|..++..... . ..+...+.+..+ -..+..+|..++..|+.++..++..-.. ......-.
T Consensus 22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (278)
T 4ffb_C 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIS 101 (278)
T ss_dssp SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH
Confidence 346889999999888764321 1 122234444444 4578899999999999999999864221 11111223
Q ss_pred CcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhccccc
Q 015709 216 GALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (402)
Q Consensus 216 g~L~~Ll~-LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~ 294 (402)
..+|.|+. .+.+....++..|+.++..++....+... .++.+...+++. +++++..++..|..++..-
T Consensus 102 ~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~K--npkv~~~~l~~l~~~l~~f--- 170 (278)
T 4ffb_C 102 TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKK--LPKLIAAAANCVYELMAAF--- 170 (278)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCS--CHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHh---
Confidence 46788885 47777888899998888887754332221 135566677765 7899999999999887531
Q ss_pred CCCCcc-hhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 295 MHKVEP-PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 295 ~~~~~~-~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
..... ....-..+++.+..+|...|.+||+.|..++..+...
T Consensus 171 -g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 171 -GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp -TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred -CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 11111 1111124566788889999999999999999988765
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.012 Score=55.17 Aligned_cols=155 Identities=8% Similarity=0.078 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC--chh-HHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID--NAN-DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 206 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD--nA~-~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp 206 (402)
.+++..+...+.+. .....+..|+..|..+++... .-. .++. -.+|+++..++...+.||..|..++-+++.+-+
T Consensus 59 ~~~~~~L~~~l~~D-~n~~v~~~A~~al~~la~~l~~~~f~~~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~ 136 (249)
T 2qk1_A 59 SNLLGIYGHIIQKD-ANIQAVALAAQSVELICDKLKTPGFSKDYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD 136 (249)
T ss_dssp HHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHhcccccccHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc
Confidence 45666666667322 245667888888888775432 111 2222 258899999999999999999999999987542
Q ss_pred HhHHHH-HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH--h-cCcHHHHHHhhcCCCccHHHHHHHHH
Q 015709 207 LVQKQV-LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY--V-EAGDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 207 ~~Q~~~-le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~--~-~gGi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
.....- + ...++.|+..+++.++.+|..++..|+.++...+.....|. - -.-++.|..++.+. +..+|..|..
T Consensus 137 ~~~~~~~l-~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~--~~~VR~aA~~ 213 (249)
T 2qk1_A 137 PLASSGRN-EDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT--QPAIRTIGFE 213 (249)
T ss_dssp TTCTTCTT-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS--SHHHHHHHHH
T ss_pred ccccCCcH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHH
Confidence 110000 0 12678899999998899999999999999987664323332 2 46889999999875 6779999999
Q ss_pred HHHHHhh
Q 015709 283 LVGDLAK 289 (402)
Q Consensus 283 lL~~L~~ 289 (402)
++..++.
T Consensus 214 ~l~~i~~ 220 (249)
T 2qk1_A 214 SFAILIK 220 (249)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999885
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0075 Score=63.91 Aligned_cols=129 Identities=12% Similarity=0.125 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
+.+.|..+.-.+..+.+.- .++.-+ .+..+.+-|+++++-+|..|..++|++. +|+.-+ ..+|.+.+++
T Consensus 87 ~~~~Krl~YL~l~~~~~~~---~e~~~L-~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~-----~l~~~v~~~l 155 (621)
T 2vgl_A 87 RYTEKQIGYLFISVLVNSN---SELIRL-INNAIKNDLASRNPTFMGLALHCIANVG--SREMAE-----AFAGEIPKIL 155 (621)
T ss_dssp CHHHHHHHHHHHHHSCCCC---HHHHHH-HHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHH-----HHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHccCC---cHHHHH-HHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHH-----HHHHHHHHHH
Confidence 4677777777777766542 222211 3456667788999999999999999996 455333 3568899999
Q ss_pred --cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 226 --KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 226 --~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.+.++-+|.+|+.|+..+.+.+|.... ..+-++.|..+|.++ ++.++..|+.++..++..
T Consensus 156 ~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~--d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 156 VAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQ--HLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCS--CHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCC--CccHHHHHHHHHHHHHHh
Confidence 778899999999999999998876433 246789999999765 678999999999999853
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.03 Score=51.04 Aligned_cols=140 Identities=13% Similarity=0.145 Sum_probs=100.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHH
Q 015709 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 263 (402)
Q Consensus 184 ~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L 263 (402)
++..-.+-..-++.+|+++.-||+.-. +.+|.|..-..-.++.+|..-.|+|.-+.|.||..... .+.-+
T Consensus 80 ksEaIpltqeIa~a~G~la~i~Pe~v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi 149 (253)
T 2db0_A 80 KSEAIPLTQEIAKAFGQMAKEKPELVK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDF 149 (253)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHH
T ss_pred hcccCchHHHHHHHHhHHHHhCHHHHH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHH
Confidence 345555556667788888887776433 35677887777788889999999999999999874443 34556
Q ss_pred HHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHH
Q 015709 264 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEAL 343 (402)
Q Consensus 264 ~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~ 343 (402)
..++.|++. .=|.-|+.+|+.|..+ ....+ .-+++.|..+|..+|.-+|-.+..+|..++...+.-|.
T Consensus 150 ~smltskd~--~Dkl~aLnFi~alGen--------~~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRk 217 (253)
T 2db0_A 150 MSMLSSKNR--EDKLTALNFIEAMGEN--------SFKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK 217 (253)
T ss_dssp HHHTSCSSH--HHHHHHHHHHHTCCTT--------THHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHhcCCCh--HHHHHHHHHHHHHhcc--------Ccccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHH
Confidence 777887643 2355666666665422 22222 35789999999999999999999999999998776555
Q ss_pred HH
Q 015709 344 VL 345 (402)
Q Consensus 344 ~~ 345 (402)
.+
T Consensus 218 ii 219 (253)
T 2db0_A 218 VV 219 (253)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.073 Score=53.18 Aligned_cols=169 Identities=17% Similarity=0.119 Sum_probs=115.7
Q ss_pred HHHHHHHHcc--CCCCchhHHHhcCCHHHHHHhcC-----------CCCHHHHHHHHHHHHHHhcCChHhHHHHHHc-Cc
Q 015709 152 RALQELLILV--EPIDNANDLSKLGGLSVLVGQLN-----------HPDTDIRKISAWILGKASQNNPLVQKQVLEL-GA 217 (402)
Q Consensus 152 ~AL~~L~~Lv--e~iDnA~~l~~lGgl~~Li~lL~-----------s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~-g~ 217 (402)
..|..|.-.+ .+++.-..|. .+|+..|+..|. ..+..++.....||..+. ||..--+.++.+ .+
T Consensus 86 ~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~ 163 (383)
T 3eg5_B 86 SCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEG 163 (383)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHH
Confidence 4466666544 4578889998 899999998884 124578889999999998 566555556654 68
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hc-HHHHH----------hcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015709 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-AG-QEMFY----------VEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (402)
Q Consensus 218 L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~-~~-~~~f~----------~~gGi~~L~~lL~s~~~d~klq~kA~~lL~ 285 (402)
+..|...+.+..+.++.-|+--|+.+|.... .+ ...++ +..-+..++..|.+. .+..++..++.+|.
T Consensus 164 i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~-~~~e~~~~~m~lIN 242 (383)
T 3eg5_B 164 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLIN 242 (383)
T ss_dssp HHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc-CcHHHHHHHHHHHH
Confidence 8999999999888888888888877665432 22 22222 223578888988875 36778889999999
Q ss_pred HHhhcccccCCC----CcchhHHhCCcHHHHHHhhcCCChHHHHH
Q 015709 286 DLAKCQLENMHK----VEPPLFRDRFFLKSVVDLTASADLDLQEK 326 (402)
Q Consensus 286 ~L~~~~l~~~~~----~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~ 326 (402)
.++... .+. ..+..|...|+.+.+-.+=..++.++..+
T Consensus 243 ~li~~~---~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 243 ALITPA---EELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp HHHTTC---CCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred HHHcCC---CCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence 988531 111 23455667888887777433345554443
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.21 Score=45.53 Aligned_cols=200 Identities=17% Similarity=0.191 Sum_probs=133.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHcc---CCCCchhHHHh-------------cCCH
Q 015709 114 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTL-SLEDSQRALQELLILV---EPIDNANDLSK-------------LGGL 176 (402)
Q Consensus 114 ~~~L~ea~~~l~~~~d~~lMk~al~~L~~~~~-t~e~k~~AL~~L~~Lv---e~iDnA~~l~~-------------lGgl 176 (402)
++++++++..+.. |--..-|.++.++.+-.. -+|-...++..|--++ |.|+-...+.+ -+.+
T Consensus 31 ~~~l~~lI~~LDD-DlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vV 109 (253)
T 2db0_A 31 ESVLKKLIELLDD-DLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI 109 (253)
T ss_dssp HHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHhcc-HHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhH
Confidence 4566777765421 223556666666644221 1233444444444432 33433222222 1234
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015709 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (402)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 256 (402)
|.+..-+.-.++.+|..-..+|+.++.+||..-.. .+.-+..|+.|.+..-|..|+.-|+++--+++.-..
T Consensus 110 p~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~---- 180 (253)
T 2db0_A 110 PVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVN---- 180 (253)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHG----
T ss_pred HHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccC----
Confidence 55555566689999999999999999999976554 457788999988877789999999998776654333
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 257 ~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
-=++.|..+|.++ |.-+|.-|+-.+.+++. .++..++. +..-++=++..+..++.++-.+|..|+-
T Consensus 181 -PfLprL~aLL~D~--deiVRaSaVEtL~~lA~-----~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 181 -PFLPRIINLLHDG--DEIVRASAVEALVHLAT-----LNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp -GGHHHHHGGGGCS--SHHHHHHHHHHHHHHHT-----SCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred -cchHHHHHHHcCc--chhhhHHHHHHHHHHHH-----cCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 3468889999986 66799999999999995 24444433 3334455666778899999999988875
Q ss_pred C
Q 015709 337 L 337 (402)
Q Consensus 337 ~ 337 (402)
.
T Consensus 247 ~ 247 (253)
T 2db0_A 247 L 247 (253)
T ss_dssp C
T ss_pred H
Confidence 5
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.28 Score=48.50 Aligned_cols=157 Identities=8% Similarity=0.010 Sum_probs=108.9
Q ss_pred HhHHHHHHHHHHc-CCCC-HHHHH----HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC
Q 015709 112 KRQMEIKELMEKL-KTPS-DAQLI----QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH 185 (402)
Q Consensus 112 ~r~~~L~ea~~~l-~~~~-d~~lM----k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s 185 (402)
+.++-+++++-.+ .|.+ ....| -..++.+.++ +.+.|.-..--+..+....+.+- =....|.+-+++
T Consensus 43 kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~--d~~lKrLvYLyl~~~~~~~~e~i-----Lv~Nsl~kDl~~ 115 (355)
T 3tjz_B 43 KCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSN--DPTLRRMCYLTIKEMSCIAEDVI-----IVTSSLTKDMTG 115 (355)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCC--CHHHHHHHHHHHHHHTTTSSCGG-----GGHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhCCCHHHHH-----HHHHHHHhhcCC
Confidence 4566777776655 2322 11122 2233344443 45666665555655555433321 146677888899
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHH
Q 015709 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 265 (402)
Q Consensus 186 ~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~ 265 (402)
+++-+|..|.++++++.. |+.-+. ..+.+-+.+.+.++-||.+|+.+...+++.+|...+ +.+.-+.+
T Consensus 116 ~N~~iR~lALRtL~~I~~--~~m~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ 183 (355)
T 3tjz_B 116 KEDSYRGPAVRALCQITD--STMLQA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQE 183 (355)
T ss_dssp SCHHHHHHHHHHHHHHCC--TTTHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHH
T ss_pred CcHhHHHHHHHHHhcCCC--HHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHH
Confidence 999999999999999974 433332 457788899999999999999999999998887543 56778888
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhh
Q 015709 266 ILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 266 lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
++.+. ++-++..|+.+++.+..
T Consensus 184 ll~d~--n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 184 AASSD--NIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HTTCS--SHHHHHHHHHHHHHHHT
T ss_pred HhcCC--CccHHHHHHHHHHHHHh
Confidence 88875 57788999999999874
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.32 Score=49.94 Aligned_cols=241 Identities=12% Similarity=0.097 Sum_probs=137.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC----CchhHHHhcCCHH--HHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPI----DNANDLSKLGGLS--VLVGQLNHPDTDIRKISAWILGKASQNN 205 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i----DnA~~l~~lGgl~--~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN 205 (402)
..+-.+..+.+.. ..|-..-.|--+.+++... ..+.-|++..... ++..++..+++-....|+.+++-+++++
T Consensus 78 ~~~~~l~lL~~~~-~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 78 TLIPLIHLLSTSD-NEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp THHHHHHHHHSCC-CHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHhhcC-hHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 4455666666643 3455555555566666542 2234455543322 3334555566667788888888888776
Q ss_pred hHhHHHHHHcCcHH--HHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHHHHhcCc--HHHHHHhhc----C-------
Q 015709 206 PLVQKQVLELGALS--KLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQDILG----N------- 269 (402)
Q Consensus 206 p~~Q~~~le~g~L~--~Ll~LL~s~-~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG--i~~L~~lL~----s------- 269 (402)
+..++..-. .+. -++..|.+. +...+--++.+++.|+|. +..+..|.+++| ++.+..++. +
T Consensus 157 ~~~~~~l~~--l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 157 LHNVKLVEK--LLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TCCHHHHHH--HHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CccHhHHHH--HhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 653332211 122 344455542 344455788899999985 566888887766 444543322 1
Q ss_pred ----CCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcH--HHHHHhhcCC-ChHHHHHHHHHHHHHhcCChh-h
Q 015709 270 ----SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL--KSVVDLTASA-DLDLQEKALAAIKNLLQLRTT-E 341 (402)
Q Consensus 270 ----~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v--~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~~~-~ 341 (402)
.+....++-.+++++.-|.. ++...+.+...+++ ..|++.++.. -..+..-++.++.+|+..... .
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF------~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~ 307 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTF------NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQH 307 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTT------SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTH
T ss_pred cccCCCccHHHHHHHHHHHHHHHc------CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhh
Confidence 11246678888888887765 34566677777654 5666767643 678888889999999987521 1
Q ss_pred ----HHHHHhcCCcHHHHHHHHHHhHHhhhhhhHhhhHHHHHHHHHHHHHHH
Q 015709 342 ----ALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIF 389 (402)
Q Consensus 342 ----~~~~~~~~GL~~~L~~L~~~~~~l~~~e~~~~y~~~l~~~~~e~~~~~ 389 (402)
++.+- .+++.+.++.|+.+ -..+| |-.+|++.+.+..+..+
T Consensus 308 ~~~~~~~~~-~~~~l~~l~~L~~r---k~~De---dl~edl~~L~e~L~~~~ 352 (480)
T 1ho8_A 308 KKVIKQLLL-LGNALPTVQSLSER---KYSDE---ELRQDISNLKEILENEY 352 (480)
T ss_dssp HHHHHHHHH-HHCHHHHHHHHHSS---CCSSH---HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHH-HccchHHHHHHhhC---CCCcH---HHHHHHHHHHHHHHHHH
Confidence 22222 23444555554221 01122 34556666666655553
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.14 Score=48.81 Aligned_cols=168 Identities=12% Similarity=0.055 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHh----cCCCCHHHHHHHHHHHHHHhc----CChHhHHHHHHcCc
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQ----LNHPDTDIRKISAWILGKASQ----NNPLVQKQVLELGA 217 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~l----L~s~~~~Ir~~Aa~vLg~~aq----NNp~~Q~~~le~g~ 217 (402)
+...+..|++.|...+++.. ..-+.. +..++.. +.++|+.+-..++.+|..+.. .+....+.-. .-.
T Consensus 59 d~k~~~~ale~L~~~l~~~~-~~~~~~---lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~ 133 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADTSP-RSLLSN---SDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAF 133 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHCH-HHHHHT---HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHhhhCh-HHHHHH---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHH
Confidence 55788889999888765421 111221 2223332 236799999999999888753 2211111110 125
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCC
Q 015709 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 297 (402)
Q Consensus 218 L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~ 297 (402)
+|.|+.-+-+..+.+|.++-..+-.+..-+|+. .-++.+...+++. +.|.|..++..+.++.... ..
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksK--N~R~R~e~l~~l~~li~~~----G~ 200 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSK--NARQRSECLLVIEYYITNA----GI 200 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHH----CS
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhc----CC
Confidence 899999888877888876655554443323331 1345677788876 6899999999999998642 11
Q ss_pred CcchhHHhCCcH---HHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 298 VEPPLFRDRFFL---KSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 298 ~~~~~l~~~g~v---~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
. ....+ +.+..++...|..+|+.|+.++..+...
T Consensus 201 ~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 201 S------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp G------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred C------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 1 13467 9999999999999999999999977654
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.53 Score=52.46 Aligned_cols=112 Identities=13% Similarity=0.026 Sum_probs=79.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCC---CHHHHHHHHHHHHHHh
Q 015709 126 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP---DTDIRKISAWILGKAS 202 (402)
Q Consensus 126 ~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~---~~~Ir~~Aa~vLg~~a 202 (402)
||-+++.+.+|++..-++..+.+.|..|.+-|+.+=++. ++|.....+|.++ ++.+|..|+.+|-+..
T Consensus 1 ~~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I 71 (980)
T 3ibv_A 1 GPMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSS---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKV 71 (980)
T ss_dssp --CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHST---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCh---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 456677788888877788888899999988887765554 3888889988653 7899999999999888
Q ss_pred cCChHh----HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcC
Q 015709 203 QNNPLV----QKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRN 246 (402)
Q Consensus 203 qNNp~~----Q~~~le~g~L~~Ll~LL~-s~~~~vr~kAl~ALS~LiR~ 246 (402)
+.-|.. +...++...+..+.+.-. .++..++.|...+++.++..
T Consensus 72 ~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~ 120 (980)
T 3ibv_A 72 REWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQ 120 (980)
T ss_dssp HHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHH
T ss_pred HhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 744444 555555555665555111 23456788888888877654
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.18 Score=46.58 Aligned_cols=125 Identities=19% Similarity=0.154 Sum_probs=85.5
Q ss_pred CCCCchhHHHhcCCHHHHHHhcCC----C-------CHHHHHHHHHHHHHHhcCChHhHHHHHH-cCcHHHHHHhhcCCC
Q 015709 162 EPIDNANDLSKLGGLSVLVGQLNH----P-------DTDIRKISAWILGKASQNNPLVQKQVLE-LGALSKLMKMVKSSF 229 (402)
Q Consensus 162 e~iDnA~~l~~lGgl~~Li~lL~s----~-------~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le-~g~L~~Ll~LL~s~~ 229 (402)
++++....| ..||+..|+.+|.. + +..++.....||..+. ||..--+.++. .+++..|...+.+..
T Consensus 32 ~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~~ 109 (233)
T 2f31_A 32 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAV 109 (233)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTTS
T ss_pred CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCCC
Confidence 456778888 57999999887742 1 4577888999999887 55555555665 468899999998888
Q ss_pred HHHHHHHHHHHHHHhcCCh-hc-HHHHH----------hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 230 VEEAVKALYTVSSLIRNNL-AG-QEMFY----------VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 230 ~~vr~kAl~ALS~LiR~~~-~~-~~~f~----------~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
+.++..|+--|+.++-... .+ ...+. +..-+..+++.+++. .+..++..++.+|..++.
T Consensus 110 ~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~e~~~~~m~lIN~li~ 180 (233)
T 2f31_A 110 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLINALIT 180 (233)
T ss_dssp HHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC-ChHHHHHHHHHHHHHHHC
Confidence 8888888776666654332 23 33222 122456677777653 356677778888877774
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.2 Score=47.43 Aligned_cols=207 Identities=16% Similarity=0.131 Sum_probs=131.5
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC-CchhHHH-hcCCHHHHHHh-------cCCCC----HHHH-HHHHH
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLS-KLGGLSVLVGQ-------LNHPD----TDIR-KISAW 196 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~l~-~lGgl~~Li~l-------L~s~~----~~Ir-~~Aa~ 196 (402)
+.|.+.+..|.++ +.|+.|+.+|..--++. |.|--+- .-|-+..|++- |..+. ..-| ..|..
T Consensus 3 ~~i~qli~~L~~p----~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLa 78 (268)
T 2fv2_A 3 EKIYQWINELSSP----ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALA 78 (268)
T ss_dssp HHHHHHHHHTSST----TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc----hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHH
Confidence 3455556666665 46999999998877765 4454443 35556666542 22221 1123 45555
Q ss_pred HHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCC-hhcHHHHHhcCcHHHHHHhhcCC
Q 015709 197 ILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNS 270 (402)
Q Consensus 197 vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~-----~~vr~kAl~ALS~LiR~~-~~~~~~f~~~gGi~~L~~lL~s~ 270 (402)
++-.+|+ ||+.+..|++.+..-.|.-+|+..+ +-+|..++.-|+++++.. ++...-+.+.+-++...+.+..+
T Consensus 79 LlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G 157 (268)
T 2fv2_A 79 LLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG 157 (268)
T ss_dssp HHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc
Confidence 5556664 8999999999987656666666543 235899999999999874 45555556788999999999976
Q ss_pred CccHHHHHHHHHHHHHHhhcc--cccCCCCcchhHHh-CCcHHHHHH-hhcCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015709 271 SFEIRLHRKAVSLVGDLAKCQ--LENMHKVEPPLFRD-RFFLKSVVD-LTASADLDLQEKALAAIKNLLQLRTTEALVLK 346 (402)
Q Consensus 271 ~~d~klq~kA~~lL~~L~~~~--l~~~~~~~~~~l~~-~g~v~~Lv~-lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~ 346 (402)
+.-.|.-|.|.+.-+.... +... -...+.|.. ..++..+|. +...+++.+..++.++-..|..++. .|..++
T Consensus 158 --selSKtvAtfIlqKIL~dd~GL~Yi-C~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r-ar~aL~ 233 (268)
T 2fv2_A 158 --SELSKTVATFILQKILLDDTGLAYI-CQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR-AREALR 233 (268)
T ss_dssp --CHHHHHHHHHHHHHHHHSHHHHHHH-TSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH-HHHHHH
T ss_pred --cHHHHHHHHHHHHHHhccchhHHHH-HccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH-HHHHHH
Confidence 4557889999999887531 0000 011111111 123333443 3456689999999999999987642 444443
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=95.22 E-value=0.87 Score=45.36 Aligned_cols=159 Identities=16% Similarity=0.104 Sum_probs=107.5
Q ss_pred CCCCchhHHHhcCCHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhcCChHhHHHHHHc-CcHHHHHHhhcCCC
Q 015709 162 EPIDNANDLSKLGGLSVLVGQLNH-----------PDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSF 229 (402)
Q Consensus 162 e~iDnA~~l~~lGgl~~Li~lL~s-----------~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~-g~L~~Ll~LL~s~~ 229 (402)
.+++....|. .||+..|+.+|.. .+..++.....||..+. ||..--+.++.+ +++..|...+.+..
T Consensus 36 ~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~~ 113 (386)
T 2bnx_A 36 NPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAV 113 (386)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTTS
T ss_pred CCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCCC
Confidence 4567788885 6899999887741 14578889999999888 555555555554 78999999998888
Q ss_pred HHHHHHHHHHHHHHhcCCh-hc-HHHHH----------hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCC
Q 015709 230 VEEAVKALYTVSSLIRNNL-AG-QEMFY----------VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 297 (402)
Q Consensus 230 ~~vr~kAl~ALS~LiR~~~-~~-~~~f~----------~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~ 297 (402)
+.++..++--|+.++-... .+ ...++ +..-+..|++.+.+. .+..++..++.+|..|+... .+.
T Consensus 114 ~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~e~~~a~m~lIN~lv~~~---~dl 189 (386)
T 2bnx_A 114 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLINALITPA---EEL 189 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT-SCHHHHHHHHHHHHHHHTTC---SCH
T ss_pred chHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC-ChHHHHHHHHHHHHHHHCCC---CCH
Confidence 8888777766666554332 23 22221 233567788888754 46778999999999998531 111
Q ss_pred ----CcchhHHhCCcHHHHHHhhcCCChHHHHH
Q 015709 298 ----VEPPLFRDRFFLKSVVDLTASADLDLQEK 326 (402)
Q Consensus 298 ----~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~ 326 (402)
..+..|...|+.+.+-.+=...++++..+
T Consensus 190 ~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 190 DFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 24556778898888776655556655544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.09 E-value=0.16 Score=56.33 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=82.6
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHhc--CChHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcH
Q 015709 176 LSVLVGQL-NHPDTDIRKISAWILGKASQ--NNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQ 251 (402)
Q Consensus 176 l~~Li~lL-~s~~~~Ir~~Aa~vLg~~aq--NNp~~Q~~~le~g~L~~Ll~LL~s~-~~~vr~kAl~ALS~LiR~~~~~~ 251 (402)
++.++..| .+.++-+|..|+.++|-+.- .|+ .+++.|++.+.++ +..+|..|+.+|+-+.-+.+.
T Consensus 543 ~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~---------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e-- 611 (963)
T 4ady_A 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNN---------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT-- 611 (963)
T ss_dssp GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH---------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS--
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH---------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH--
Confidence 44444444 23455555555555443222 222 1356666665544 467888888898877655542
Q ss_pred HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHH
Q 015709 252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAI 331 (402)
Q Consensus 252 ~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL 331 (402)
.++.++..|... .++-+|..|++++.-++.. ++. ..++..|..++...|.+|+..|+.+|
T Consensus 612 -------~v~rlv~~L~~~-~d~~VR~gAalALGli~aG-----n~~-------~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 612 -------TVPRIVQLLSKS-HNAHVRCGTAFALGIACAG-----KGL-------QSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp -------SHHHHTTTGGGC-SCHHHHHHHHHHHHHHTSS-----SCC-------HHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHhc-CCHHHHHHHHHHHHHhccC-----CCc-------HHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 233444544432 3678999999999988742 221 23556677777788999999999999
Q ss_pred HHHhcCCh
Q 015709 332 KNLLQLRT 339 (402)
Q Consensus 332 ~~L~~~~~ 339 (402)
..+.....
T Consensus 672 G~Ig~gtn 679 (963)
T 4ady_A 672 SMILIQQT 679 (963)
T ss_dssp HHHSTTCC
T ss_pred HHHhcCCc
Confidence 98887643
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=94.95 E-value=0.52 Score=51.41 Aligned_cols=138 Identities=13% Similarity=0.069 Sum_probs=92.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh---cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcH
Q 015709 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV---KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 260 (402)
Q Consensus 184 ~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL---~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi 260 (402)
.+++...+..|++++|.++..-+... ...++.++..+ .++++.+|..++|+|+...+...... .+. ..-+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHH
Confidence 55677889999999999997643211 23345555443 33467799999999998775422222 232 3677
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC--ChHHHHHHHHHHHHHhcCC
Q 015709 261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 261 ~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~~~~ 338 (402)
+.|...|.+ ++++..|+.++.+++.. ......+.+ ..++..+..++..+ +.+.++.++.++..++...
T Consensus 532 ~~l~~~l~~----~~V~~~A~~al~~l~~~----~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 532 PLVLHALGN----PELSVSSVSTLKKICRE----CKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHHHTTC----GGGHHHHHHHHHHHHHH----TGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCC----chHHHHHHHHHHHHHHH----HHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 888888864 45899999999999953 122222322 23555566666653 5789999999999998754
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.94 E-value=1.6 Score=40.13 Aligned_cols=143 Identities=17% Similarity=0.173 Sum_probs=97.8
Q ss_pred HcCcHHHHHHhhcCC-----------CHHHHHHHHHHHHHHhcCChhcHHHHHhc-CcHHHHHHhhcCCCccHHHHHHHH
Q 015709 214 ELGALSKLMKMVKSS-----------FVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAV 281 (402)
Q Consensus 214 e~g~L~~Ll~LL~s~-----------~~~vr~kAl~ALS~LiR~~~~~~~~f~~~-gGi~~L~~lL~s~~~d~klq~kA~ 281 (402)
..+|+..|+.+|..- +......++.+|-++. +++.+.+.+..+ +++..|..+|.++ .++++.-++
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~--~~~~r~~~l 117 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAA 117 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTT--SHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCC--CchHHHHHH
Confidence 468888888887631 1233557778887775 677888888764 6889999999876 678999999
Q ss_pred HHHHHHhhcccccC-CCCcchhH------HhCCcHHHHHHhhcC-CChHHHHHHHHHHHHHhcCChh------hHHHHHh
Q 015709 282 SLVGDLAKCQLENM-HKVEPPLF------RDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQLRTT------EALVLKD 347 (402)
Q Consensus 282 ~lL~~L~~~~l~~~-~~~~~~~l------~~~g~v~~Lv~lL~~-~d~dv~E~aL~aL~~L~~~~~~------~~~~~~~ 347 (402)
.+++.+|......+ .....+.+ .+..-...+++.|.+ .+.+++-.++..+-.++..+++ .|..|.
T Consensus 118 eLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~- 196 (233)
T 2f31_A 118 KLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELM- 196 (233)
T ss_dssp HHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-
T ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-
Confidence 99999886420001 11111111 223344557787874 5789999999988888888653 233455
Q ss_pred cCCcHHHHHHHHH
Q 015709 348 FCGLDTALERLRQ 360 (402)
Q Consensus 348 ~~GL~~~L~~L~~ 360 (402)
.+|+.+.+++|+.
T Consensus 197 ~~Gl~~il~~l~~ 209 (233)
T 2f31_A 197 RLGLHQVLQELRE 209 (233)
T ss_dssp HTTHHHHHHHHHH
T ss_pred HCChHHHHHHHhc
Confidence 7999999999975
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=94.82 E-value=2.1 Score=42.52 Aligned_cols=241 Identities=14% Similarity=0.133 Sum_probs=131.5
Q ss_pred hccCCCCHHHHHHhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHH
Q 015709 100 QDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVL 179 (402)
Q Consensus 100 ~~~~~~s~e~l~~r~~~L~ea~~~l~~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~L 179 (402)
++..+||++++. +-.++.|+.++.+.+.. +-+.+. +.+.|-.-+..-..- .... ...-....--.-.
T Consensus 5 ~~~~~~se~ev~---~~F~~mL~~mnl~~ek~------~~l~~~--~~e~Kw~mi~~~~~~-~~~~-~~~~~~~~sP~~y 71 (383)
T 3eg5_B 5 QSLQDISDEQVL---VLFEQMLVDMNLNEEKQ------QPLREK--DIVIKREMVSQYLHT-SKAG-MNQKESSRSAMMY 71 (383)
T ss_dssp ----------CC---HHHHHHHHHTTCCHHHH------HHHHSS--CHHHHHHHHHHHHHH-C----------CCCHHHH
T ss_pred hhcccCCHHHHH---HHHHHHHHHcCCCHHHH------HHHHhC--CHHHHHHHHHHHHHH-hhhc-cccccCCCCHHHH
Confidence 456778887763 23466788888765443 333333 345453332211100 0000 0001112222334
Q ss_pred HHhcCCCC-HHHHHHHHHHHHHHhcCChHhH-HHHHHcCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhcC
Q 015709 180 VGQLNHPD-TDIRKISAWILGKASQNNPLVQ-KQVLELGALSKLMKMVKS-----------SFVEEAVKALYTVSSLIRN 246 (402)
Q Consensus 180 i~lL~s~~-~~Ir~~Aa~vLg~~aqNNp~~Q-~~~le~g~L~~Ll~LL~s-----------~~~~vr~kAl~ALS~LiR~ 246 (402)
+..|.+.. .+-......-|...-.++|..- +.|. .+|+..|+.+|.. .+......++.+|.++. +
T Consensus 72 i~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N 149 (383)
T 3eg5_B 72 IQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-N 149 (383)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-S
T ss_pred HHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-c
Confidence 55554432 2111112333333334444322 3344 6789999998852 11244567778887775 6
Q ss_pred ChhcHHHHHhc-CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCC----cchhH------HhCCcHHHHHHh
Q 015709 247 NLAGQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV----EPPLF------RDRFFLKSVVDL 315 (402)
Q Consensus 247 ~~~~~~~f~~~-gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~----~~~~l------~~~g~v~~Lv~l 315 (402)
+..+...++.+ .++..|..+|.++ .++++.-|+-+++.+|... .+.. ..+.+ .+..-...+++.
T Consensus 150 ~~~G~~~vl~~~~~i~~l~~~L~s~--~~~~~~~aleLL~~lc~~~---~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~ 224 (383)
T 3eg5_B 150 NKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAKLLSALCILP---QPEDMNERVLEAMTERAEMDEVERFQPLLDG 224 (383)
T ss_dssp SHHHHHHHHTCSSHHHHHHHTCCTT--SHHHHHHHHHHHHHHHTCC---SSTTHHHHHHHHHHHHHHHHTSCTTHHHHHT
T ss_pred chhhHHHHHcChHHHHHHHHHhCCC--chHHHHHHHHHHHHHHhCc---CcCCcHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 77888888875 6889999999876 6789999999999998631 1011 11111 233445678888
Q ss_pred hcC-CChHHHHHHHHHHHHHhcCChh------hHHHHHhcCCcHHHHHHHHHH
Q 015709 316 TAS-ADLDLQEKALAAIKNLLQLRTT------EALVLKDFCGLDTALERLRQQ 361 (402)
Q Consensus 316 L~~-~d~dv~E~aL~aL~~L~~~~~~------~~~~~~~~~GL~~~L~~L~~~ 361 (402)
|.+ .+.+++-.++..+-.++..+++ .|..|. .+|+.+.+++|+..
T Consensus 225 L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~-~~Gl~~il~~lr~~ 276 (383)
T 3eg5_B 225 LKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELM-RLGLHQVLQELREI 276 (383)
T ss_dssp TSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-HTTHHHHHHHHTTS
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCChHHHHHHHhcC
Confidence 887 5889999999988888887643 223455 79999999988753
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=94.73 E-value=1 Score=44.85 Aligned_cols=139 Identities=17% Similarity=0.181 Sum_probs=96.9
Q ss_pred cCcHHHHHHhhcC----C-------CHHHHHHHHHHHHHHhcCChhcHHHHHhc-CcHHHHHHhhcCCCccHHHHHHHHH
Q 015709 215 LGALSKLMKMVKS----S-------FVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 215 ~g~L~~Ll~LL~s----~-------~~~vr~kAl~ALS~LiR~~~~~~~~f~~~-gGi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
.+|+..|+.+|.. . +......++.+|-++. +++.+.+.+..+ +++..|..+|.++ .++++..++.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~--~~~~r~~vle 122 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAK 122 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTT--SHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCC--CchHHHHHHH
Confidence 5778888877752 1 1234567788888775 567788877765 6899999999875 6788999999
Q ss_pred HHHHHhhcccccCCCC----cchh------HHhCCcHHHHHHhhc-CCChHHHHHHHHHHHHHhcCChh------hHHHH
Q 015709 283 LVGDLAKCQLENMHKV----EPPL------FRDRFFLKSVVDLTA-SADLDLQEKALAAIKNLLQLRTT------EALVL 345 (402)
Q Consensus 283 lL~~L~~~~l~~~~~~----~~~~------l~~~g~v~~Lv~lL~-~~d~dv~E~aL~aL~~L~~~~~~------~~~~~ 345 (402)
++..+|... .+.. .... ..+..-...+++.|. +.+.+++..++..+-.++..+++ .|..|
T Consensus 123 LL~alc~~~---~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef 199 (386)
T 2bnx_A 123 LLSALCILP---QPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL 199 (386)
T ss_dssp HHHHHHTCC---SSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHcCC---CCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 999998631 1111 1111 123334456778787 45889999999989888888653 23455
Q ss_pred HhcCCcHHHHHHHHH
Q 015709 346 KDFCGLDTALERLRQ 360 (402)
Q Consensus 346 ~~~~GL~~~L~~L~~ 360 (402)
. .+|+.+.+++|+.
T Consensus 200 ~-~~GL~~il~~Lr~ 213 (386)
T 2bnx_A 200 M-RLGLHQVLQELRE 213 (386)
T ss_dssp H-HTTHHHHHHHHTT
T ss_pred H-HCChHHHHHHHhc
Confidence 5 7999999998876
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=94.61 E-value=0.19 Score=56.45 Aligned_cols=139 Identities=12% Similarity=0.073 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC---H--HHHHHHHHHHHHHhcC---ChhcHHHHHhc
Q 015709 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF---V--EEAVKALYTVSSLIRN---NLAGQEMFYVE 257 (402)
Q Consensus 186 ~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~---~--~vr~kAl~ALS~LiR~---~~~~~~~f~~~ 257 (402)
.+-..+..|+|++|.++..-..-+..-.=..+++.|+.+..... + -++..++|.||...+- ++. |. .
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~----~L-~ 539 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN----FL-R 539 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH----HH-H
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH----HH-H
Confidence 56788999999999999764433332222357888888886411 2 2455677999975542 332 21 2
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh------C----CcHHHHHHhhcCCChHHHHHH
Q 015709 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD------R----FFLKSVVDLTASADLDLQEKA 327 (402)
Q Consensus 258 gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~------~----g~v~~Lv~lL~~~d~dv~E~a 327 (402)
.-+..|...+.++ +++++..|++++.+||.. .+..+.. . .++..+...+..-+..-+..+
T Consensus 540 ~vl~~L~~~l~~~--~~~v~~~A~~al~~l~~~--------c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~l 609 (1023)
T 4hat_C 540 TVILKLFEFMHET--HEGVQDMACDTFIKIVQK--------CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTF 609 (1023)
T ss_dssp HHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHH--------HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHH--------HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3445566666543 578999999999999963 1112211 1 233334444444577788899
Q ss_pred HHHHHHHhcCCh
Q 015709 328 LAAIKNLLQLRT 339 (402)
Q Consensus 328 L~aL~~L~~~~~ 339 (402)
..++..+++..+
T Consensus 610 yeai~~vi~~~~ 621 (1023)
T 4hat_C 610 YKACGIIISEER 621 (1023)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHhCC
Confidence 999999988754
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=94.60 E-value=0.62 Score=51.98 Aligned_cols=188 Identities=14% Similarity=0.153 Sum_probs=122.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhc-CCHHHHHHhcCCCCHHHHHHHHHHHHHHhc--CChH
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL-GGLSVLVGQLNHPDTDIRKISAWILGKASQ--NNPL 207 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~l-Ggl~~Li~lL~s~~~~Ir~~Aa~vLg~~aq--NNp~ 207 (402)
.++..+++.+.+.. .=..|+.||..+..+++.. ...--..+ ..+|.+-.+.-...++|+..|..++..+|+ .|..
T Consensus 133 ~~~~~~~~~~~~~~-kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d 210 (986)
T 2iw3_A 133 ALLPHLTNAIVETN-KWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD 210 (986)
T ss_dssp HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT
T ss_pred HHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc
Confidence 34455555564433 3568999999999999754 11111122 246666677788999999999999999987 3554
Q ss_pred hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015709 208 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (402)
Q Consensus 208 ~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L 287 (402)
+. ..+|.|++.+.+++. .-+++..||+.+-- .....=--+=-+|+|.+.|... ...++++++-.+-||
T Consensus 211 ~~------~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv--~~v~~~~l~~~~p~l~r~l~~~--~~~~~r~~~~~~~n~ 278 (986)
T 2iw3_A 211 IE------RFIPSLIQCIADPTE--VPETVHLLGATTFV--AEVTPATLSIMVPLLSRGLNER--ETGIKRKSAVIIDNM 278 (986)
T ss_dssp TG------GGHHHHHHHHHCTTH--HHHHHHHHTTCCCC--SCCCHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHH
T ss_pred hh------hhHHHHHHHhcChhh--hHHHHHHhhcCeeE--eeecchhHHHHHHHHHhhhccC--cchhheeeEEEEcch
Confidence 43 468999999987642 55678888874321 1111100112357777778765 345789999999999
Q ss_pred hhcccccCCCCcchhHHhCCcHHHHHHhhcC-CChHHHHHHHHHHHHHhc
Q 015709 288 AKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~d~dv~E~aL~aL~~L~~ 336 (402)
|.- -.+|....-|. ..++|.|-..... .||++||.+-+|+..|..
T Consensus 279 ~~l---v~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 279 CKL---VEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp HTT---CCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred hhh---cCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 963 12333333332 4566666665544 499999999999998854
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=94.31 E-value=0.4 Score=52.77 Aligned_cols=181 Identities=9% Similarity=0.028 Sum_probs=104.3
Q ss_pred CHHHHHHHHHHHHHccCCCCc----hh------HHHhcCCHHHHHHhcCCC---CHHHHHHHHHHHHHHhcCChHhHHHH
Q 015709 146 SLEDSQRALQELLILVEPIDN----AN------DLSKLGGLSVLVGQLNHP---DTDIRKISAWILGKASQNNPLVQKQV 212 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDn----A~------~l~~lGgl~~Li~lL~s~---~~~Ir~~Aa~vLg~~aqNNp~~Q~~~ 212 (402)
+-..|..|+-.+..+.+.... .. ++... ....++..|.++ ++-+|..|+|+||..+..-+ ...
T Consensus 418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~-l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~~ 493 (960)
T 1wa5_C 418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF-FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQ 493 (960)
T ss_dssp CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH-HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHH
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHH-HHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HHH
Confidence 345777888877776543211 11 11110 011234556666 89999999999999987522 222
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-------h-cHHHHH--hcCcHHHHHHhhcCCC-ccHH--HHHH
Q 015709 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-------A-GQEMFY--VEAGDLMLQDILGNSS-FEIR--LHRK 279 (402)
Q Consensus 213 le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~-------~-~~~~f~--~~gGi~~L~~lL~s~~-~d~k--lq~k 279 (402)
+ ...++.++..+.+++..|+..|++||.+++.+.. . ....+. -..-++.|..++.... ...+ ....
T Consensus 494 l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~ 572 (960)
T 1wa5_C 494 L-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF 572 (960)
T ss_dssp H-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred H-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence 2 2468889988888788899999999999987421 1 111121 1234555666666531 0011 1235
Q ss_pred HHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhh----cC-CChHHHHHHHHHHHHHhcC
Q 015709 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT----AS-ADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 280 A~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL----~~-~d~dv~E~aL~aL~~L~~~ 337 (402)
+..+|..++.. ......+.+. .+++.+...+ ++ ++..+...++.+|..++..
T Consensus 573 l~~al~~vv~~----~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~ 629 (960)
T 1wa5_C 573 LMRSIFRVLQT----SEDSIQPLFP--QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY 629 (960)
T ss_dssp HHHHHHHHHHH----HTTTTGGGHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH----HHHhhhhHHH--HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 56666666542 1233344322 2444444443 22 3777888889999888775
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=93.75 E-value=0.045 Score=56.23 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=69.2
Q ss_pred chhHHHhc--CCHHHHHHhcCC----------CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHH
Q 015709 166 NANDLSKL--GGLSVLVGQLNH----------PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA 233 (402)
Q Consensus 166 nA~~l~~l--Ggl~~Li~lL~s----------~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr 233 (402)
||..|.+- ..+..|+.+|++ .++.+.+-||.=||..++..|..+..+-+.|+=..++.|+.+++++||
T Consensus 385 Na~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr 464 (480)
T 1ho8_A 385 NIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVK 464 (480)
T ss_dssp HSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHH
Confidence 44444442 246678888963 478899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 015709 234 VKALYTVSSLIRNN 247 (402)
Q Consensus 234 ~kAl~ALS~LiR~~ 247 (402)
..|+.|+.-++.++
T Consensus 465 ~~AL~avQklm~~~ 478 (480)
T 1ho8_A 465 YEALKATQAIIGYT 478 (480)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.64 E-value=1.1 Score=49.70 Aligned_cols=139 Identities=14% Similarity=0.099 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc-CCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCC
Q 015709 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNN 205 (402)
Q Consensus 128 ~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lv-e~iDnA~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNN 205 (402)
.+...+++++..+.+.. +.+.|..|...|..+. .+. ..++.++..| .+.++.||..|++++|.++..|
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn 643 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGK 643 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCC
Confidence 44566777777776543 4466777777777643 322 2466777755 6789999999999999999888
Q ss_pred hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc----HHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015709 206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG----QEMFYVEAGDLMLQDILGNSSFEIRLHRKAV 281 (402)
Q Consensus 206 p~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~----~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~ 281 (402)
|. . .++..|..+.++.+..||..|+.||+-+.-++..+ ...|. ..|.....+++.+...+--+.
T Consensus 644 ~~--~-----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l-----~~L~~~~~dk~~d~~~~fga~ 711 (963)
T 4ady_A 644 GL--Q-----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADIN-----KNFLSVITNKHQEGLAKFGAC 711 (963)
T ss_dssp CC--H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHH-----HHHHHHHHCSSSCHHHHHHHH
T ss_pred Cc--H-----HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHH-----HHHHHHHhcccccHHHHHHHH
Confidence 73 1 24567777888888999999999999887665443 33332 224444444333444555555
Q ss_pred HHHHHHh
Q 015709 282 SLVGDLA 288 (402)
Q Consensus 282 ~lL~~L~ 288 (402)
.+..-+.
T Consensus 712 iAqGll~ 718 (963)
T 4ady_A 712 VAQGIMN 718 (963)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 5555443
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.6 Score=51.12 Aligned_cols=131 Identities=10% Similarity=0.107 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHH---HhcC--CCCHHHHHHHHHHHHHHhcC---ChHhHHHHHHcCc
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLV---GQLN--HPDTDIRKISAWILGKASQN---NPLVQKQVLELGA 217 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li---~lL~--s~~~~Ir~~Aa~vLg~~aqN---Np~~Q~~~le~g~ 217 (402)
+-..++.|+-.|.-+.+....... ..++.++ ..|. .+++.||..|+|+||..+.- +|+ .+. ..
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~~----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~----~l~-~v 547 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEEK----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA----YIP-PA 547 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC--------CHH-HH
T ss_pred cHHHHHHHHHHHHHHHhhcChhhh----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH----HHH-HH
Confidence 345788888888887776543221 2233333 3334 34899999999999998742 231 111 35
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 218 L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
++.|+..++ +.++..|.+|+..+++........++ ..-+..|..++..+..+.+.+..+..++..++.
T Consensus 548 l~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 548 INLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 677777772 56899999999999987654333332 245556667777654456788889999998875
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=4.7 Score=39.50 Aligned_cols=145 Identities=14% Similarity=0.112 Sum_probs=104.9
Q ss_pred HHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC---cHHHHHHhhcC
Q 015709 193 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA---GDLMLQDILGN 269 (402)
Q Consensus 193 ~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g---Gi~~L~~lL~s 269 (402)
.+=.+|..|+. ++.+...++..+.+-.+.+.+..++=++...|...+-.+...|+.....|+..+ =+...-.+|.|
T Consensus 142 ~~G~mLRecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S 220 (341)
T 1upk_A 142 NCGIMLRECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS 220 (341)
T ss_dssp HHHHHHHHHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 33444444444 445566666667777788888877778888888888888777887777887655 34556678888
Q ss_pred CCccHHHHHHHHHHHHHHhhcccccCCCCc-chhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHH
Q 015709 270 SSFEIRLHRKAVSLVGDLAKCQLENMHKVE-PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEAL 343 (402)
Q Consensus 270 ~~~d~klq~kA~~lL~~L~~~~l~~~~~~~-~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~ 343 (402)
+ +.=.|+.++-+|+.|.... .+... ...+.+..-++.++.+|+.+...+|-.|-....-.+..+...+.
T Consensus 221 ~--NYVTkRQSlKLLgelLldr---~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~ 290 (341)
T 1upk_A 221 E--NYVTKRQSLKLLGELLLDR---HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQP 290 (341)
T ss_dssp S--SHHHHHHHHHHHHHHHHSG---GGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHH
T ss_pred C--cchhHHHHHHHHHHHHhCc---hHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChH
Confidence 7 4558999999999998631 12222 23344567889999999999999999999999988888754443
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=93.14 E-value=1.1 Score=48.86 Aligned_cols=136 Identities=14% Similarity=0.116 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHh---cCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHH
Q 015709 145 LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQ---LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 221 (402)
Q Consensus 145 ~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~l---L~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~L 221 (402)
.+...++.++-.+..+.+.++... ..-++.++.. +.++++.||..++|+||..+.--.... .++ ...++.|
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~~----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l 534 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVNY----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLV 534 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSSC----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHH
T ss_pred CchHHHHHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHH
Confidence 356678888888877776653211 1123334433 344688999999999999875311111 233 3688999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 222 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 222 l~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
+..+.+ +.++..|++|+..+++..+....-++ ..-+..|..++..+..+.+.+..+..++..++.
T Consensus 535 ~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 535 LHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 988865 67899999999999986543222111 223445556666533356678888888888874
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.03 E-value=4.7 Score=38.76 Aligned_cols=206 Identities=11% Similarity=0.067 Sum_probs=113.1
Q ss_pred CCCCHHHHHHhHHHHHHHHHHcC-----CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHH
Q 015709 103 QRLSPSELKKRQMEIKELMEKLK-----TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLS 177 (402)
Q Consensus 103 ~~~s~e~l~~r~~~L~ea~~~l~-----~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~ 177 (402)
.+++|+++. -|.++++.+. .+++ ..+.-+.+++ ..+.+.+..++|-|+-.+-+.+-+.-|..-+.-.
T Consensus 75 ~~Ls~~el~----~L~~l~~~l~~~s~~~~~~-~~l~~l~kil---~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~ 146 (304)
T 3ebb_A 75 KKLTEDDLI----LLEKILSLICNSSSEKPTV-QQLQILWKAI---NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGA 146 (304)
T ss_dssp GCCCHHHHH----HHHHHHHHHHTTCSSCCCH-HHHHHHHHHH---TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHH
T ss_pred cCcCHHHHH----HHHHHHHHHhccCCCccch-HHHHHHHHHH---cCCHHhHHHHHHHHHHHHcCccHHHHhhccccch
Confidence 368998763 2334443321 1222 2333333443 3556788899999998887666555565443333
Q ss_pred HHH----HhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHc--CcHHHHHHhhcCCCHHHHHHH---HHHHHHHhcCC
Q 015709 178 VLV----GQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKA---LYTVSSLIRNN 247 (402)
Q Consensus 178 ~Li----~lL~-s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~--g~L~~Ll~LL~s~~~~vr~kA---l~ALS~LiR~~ 247 (402)
.++ ..++ ...+..+..++++++|+..+ +..++.++.. ..++.+...+.+.+..++..+ ++-+|......
T Consensus 147 ~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~ 225 (304)
T 3ebb_A 147 QFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD 225 (304)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc
Confidence 333 4443 24577799999999999975 5566666643 244445555555567776544 44444433222
Q ss_pred hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcC-CChHHHHH
Q 015709 248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEK 326 (402)
Q Consensus 248 ~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~d~dv~E~ 326 (402)
.. .+.- .--...+..++... .+.....+++-++.+|+. .+.+..+.....|+-..+-..... ....+.|.
T Consensus 226 ~~-~~~~--~~ll~~l~~il~~~-~d~EalyR~LvALGtL~~-----~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~ 296 (304)
T 3ebb_A 226 HN-IEGK--AQCLSLISTILEVV-QDLEATFRLLVALGTLIS-----DDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSEC 296 (304)
T ss_dssp CC-HHHH--HHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHH
T ss_pred CC-chHH--HHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHh-----CChhHHHHHHHcCHHHHHHHHHhCCCchhHHHH
Confidence 11 1111 11334455555543 356678889999999984 233334444445555544444443 23444443
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=92.81 E-value=6.2 Score=37.05 Aligned_cols=179 Identities=7% Similarity=0.054 Sum_probs=114.1
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
+.++|+..|....+++-+-|.+ -+- .-++.++.+-.+++.++|...+..|..++...++... ..++.|..++
T Consensus 28 ~~~~kl~~L~qa~el~~~~dp~-ll~--~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll 99 (257)
T 3gs3_A 28 SPSTKCELLAKVQETVLGSCAE-LAE--EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLL 99 (257)
T ss_dssp CHHHHHHHHHHHHHHHTTTTGG-GHH--HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHccCHh-HHH--HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 3479999999999977655432 222 2467778877778999999999999999976665433 3578899999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc--------H-------HHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--------D-------LMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG--------i-------~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
+++++.+.++++-+.+++- |...+.+...++ | ..+...+.+. +..+|..|+-++..+..-
T Consensus 100 ~d~d~~V~K~~I~~~~~iY---~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~--n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 100 RDNSAQVIKRVIQACGSIY---KNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE--NDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp TCSCHHHHHHHHHHHHHHH---HHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS--CHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH---HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC--CcchHHHHHHHHHHHHHh
Confidence 9888889888888888864 333344443332 2 2344445554 677899999888887632
Q ss_pred cc-ccCC-----------------CCc-chhHH--hCCcHHHHHHhhcCC--ChHHHHHHHHHHHHHhcC
Q 015709 291 QL-ENMH-----------------KVE-PPLFR--DRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 291 ~l-~~~~-----------------~~~-~~~l~--~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~~~ 337 (402)
+- ...+ +-. ...+. -.+++..|+..+.++ +.-....++..|..++..
T Consensus 175 qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~ 244 (257)
T 3gs3_A 175 QSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKM 244 (257)
T ss_dssp TSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHh
Confidence 20 0000 000 11222 145666666666654 233455666666666653
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=92.66 E-value=2.3 Score=46.62 Aligned_cols=194 Identities=9% Similarity=0.102 Sum_probs=117.8
Q ss_pred HHHHHHhhcCC-CCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-------
Q 015709 134 QIAIDDLNNST-LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN------- 205 (402)
Q Consensus 134 k~al~~L~~~~-~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN------- 205 (402)
...+..+.++. ..+-.|..|+..+..+.+.+. ...+ ...++.+++.|.++++.||..||++|.+++.+.
T Consensus 458 ~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~~~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~ 534 (960)
T 1wa5_C 458 KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPA 534 (960)
T ss_dssp HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCC
T ss_pred HHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-HHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccccc
Confidence 34555666542 256678889999999888763 2222 235778888888889999999999999988741
Q ss_pred hH-hHHHHHH--cCcHHHHHHhhcCCC---HH--HHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh----cCCCcc
Q 015709 206 PL-VQKQVLE--LGALSKLMKMVKSSF---VE--EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL----GNSSFE 273 (402)
Q Consensus 206 p~-~Q~~~le--~g~L~~Ll~LL~s~~---~~--vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL----~s~~~d 273 (402)
+. .+..+.. ...++.|+.++.... .. ....++.||+.++...+.....+.. .-++.|...+ +++ .+
T Consensus 535 ~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~-~~ 612 (960)
T 1wa5_C 535 FIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNP-SN 612 (960)
T ss_dssp BSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSC-CC
T ss_pred ccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCC-CC
Confidence 11 1222211 135667777777641 11 2345666776665543222222211 1223333333 333 36
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 274 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 274 ~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
..++..+..+|+.++.. .+++....+ ...+++.+...|..+..++.+.+...+..++..
T Consensus 613 ~~~~~~~~e~l~~l~~~----~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 613 PRFTHYTFESIGAILNY----TQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HHHHHHHHHHHHHHHHT----SCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc----CCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 66777888888888752 233333333 345677888888877777888888888777643
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=92.65 E-value=1.1 Score=45.95 Aligned_cols=80 Identities=13% Similarity=0.177 Sum_probs=66.3
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhc
Q 015709 178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (402)
Q Consensus 178 ~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~ 257 (402)
.++..-+ +++..+..|+..|....++-|..|+. +|..+++|..+++..+|+.|+..|..+|++ .....
T Consensus 33 ~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k---- 100 (507)
T 3u0r_A 33 VILDGVK-GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPR---- 100 (507)
T ss_dssp HHHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH----
T ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhh----
Confidence 3444333 46999999999999999999999987 467899999999999999999999999997 33333
Q ss_pred CcHHHHHHhhcCC
Q 015709 258 AGDLMLQDILGNS 270 (402)
Q Consensus 258 gGi~~L~~lL~s~ 270 (402)
...+|+++|+++
T Consensus 101 -iaDvL~QlLqtd 112 (507)
T 3u0r_A 101 -VADILTQLLQTD 112 (507)
T ss_dssp -HHHHHHHHTTCC
T ss_pred -HHHHHHHHHhcc
Confidence 457899999976
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=92.44 E-value=0.94 Score=49.58 Aligned_cols=134 Identities=13% Similarity=0.069 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh---c--CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcH
Q 015709 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV---K--SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 260 (402)
Q Consensus 186 ~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL---~--s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi 260 (402)
++-..+..|..++|.++..-+.... ..++.++.++ . +.++.+|..++|+|+.+........+ +. ...+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l-~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YI-PPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HH-HHHH
Confidence 4667899999999999976443221 3344444433 3 23678899999999987653221111 11 1245
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC--ChHHHHHHHHHHHHHhcC
Q 015709 261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 261 ~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~~~ 337 (402)
+.|...|. ++++..|++++.+|+.. ......+.+ ..++..+.+++..+ +.+.++.++.++..++..
T Consensus 549 ~~l~~~l~-----~~v~~~A~~al~~l~~~----~~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 549 NLLVRGLN-----SSMSAQATLGLKELCRD----CQLQLKPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHHH-----SSCHHHHHHHHHHHHHH----CHHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-----hHHHHHHHHHHHHHHHH----HHHhccccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 56666662 24799999999999953 111122222 34566667777774 678999999999999875
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=91.85 E-value=5.3 Score=44.79 Aligned_cols=141 Identities=15% Similarity=0.109 Sum_probs=70.2
Q ss_pred ccCCCCHHHHH----------HhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHH
Q 015709 101 DVQRLSPSELK----------KRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDL 170 (402)
Q Consensus 101 ~~~~~s~e~l~----------~r~~~L~ea~~~l~~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l 170 (402)
-.+.++.|++. +-+.|+.+++-..|.+.-...|++. +.+...+..+-..++-.+...+... .
T Consensus 319 ~lR~~~~e~L~~l~~~~~~~~~~r~~~lDal~~aGT~~a~~~i~~~---i~~~~l~~~ea~~~l~~~~~~~~Pt---~-- 390 (1056)
T 1lsh_A 319 FLRNVDAGVLQSIWHKLHQQKDYRRWILDAVPAMATSEALLFLKRT---LASEQLTSAEATQIVASTLSNQQAT---R-- 390 (1056)
T ss_dssp HHTTSCHHHHHHHHHHHTTSHHHHHHHHHHHHHHCSHHHHHHHHHH---HHTTCSCHHHHHHHHHHHHHTCCCC---H--
T ss_pred HHhcCCHHHHHHHHHHHhccHHHHHHHHHHhHhcCCHHHHHHHHHH---HHcCCCCHHHHHHHHHHhhccCCCC---H--
Confidence 34567776653 1234666666555554334444444 5566667655444444433333221 1
Q ss_pred HhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhc----CChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015709 171 SKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQ----NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 242 (402)
Q Consensus 171 ~~lGgl~~Li~lL~s----~~~~Ir~~Aa~vLg~~aq----NNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~ 242 (402)
..+..+..++++ .++.+|..|.-.+|+++. +++.|...+++ -....|.+.+.+.+...+..+|.||+|
T Consensus 391 ---e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN 466 (1056)
T 1lsh_A 391 ---ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGN 466 (1056)
T ss_dssp ---HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence 123344455554 467788777777777663 33222111110 012223333444455556777777777
Q ss_pred HhcCChhcHHHHH
Q 015709 243 LIRNNLAGQEMFY 255 (402)
Q Consensus 243 LiR~~~~~~~~f~ 255 (402)
+ ++|.....+.
T Consensus 467 ~--g~p~~l~~l~ 477 (1056)
T 1lsh_A 467 A--GQPNSIKKIQ 477 (1056)
T ss_dssp H--TCGGGHHHHH
T ss_pred c--CChhHHHHHH
Confidence 6 3455545443
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.40 E-value=2.3 Score=40.24 Aligned_cols=198 Identities=16% Similarity=0.125 Sum_probs=127.7
Q ss_pred hHHHHHHHhhcCCCccccchhhccCCCCHHHHHHhHHHHH----HHHHHcCCCCHHHHHHHHHHHhhc---CCCCHH--H
Q 015709 79 IDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIK----ELMEKLKTPSDAQLIQIAIDDLNN---STLSLE--D 149 (402)
Q Consensus 79 ~~gLLkwsi~~sd~~~~~~~~~~~~~~s~e~l~~r~~~L~----ea~~~l~~~~d~~lMk~al~~L~~---~~~t~e--~ 149 (402)
++.+.+|-.+-.+|+....+-. ++-|||+-.. -.+.++| +-+.+.++.+.+.-. +..+.. +
T Consensus 2 ~~~i~qli~~L~~p~~Re~AL~--------eLsk~Re~~~~La~~LW~S~G--tia~LLQEIisiYp~lspp~Lt~~~Sn 71 (268)
T 2fv2_A 2 REKIYQWINELSSPETRENALL--------ELSKKRESVPDLAPMLWHSFG--TIAALLQEIVNIYPSINPPTLTAHQSN 71 (268)
T ss_dssp CHHHHHHHHHTSSTTTHHHHHH--------HHHHHTTTCTTHHHHHHHSTT--HHHHHHHHHHHTGGGBTTBCCCHHHHH
T ss_pred hHHHHHHHHHhcCchhHHHHHH--------HHHHhhhccccHHHHHHhccC--HHHHHHHHHHHHcccCCCcccCHHHHh
Confidence 4678889888777765321211 1112222111 1334333 345777888887643 333432 3
Q ss_pred H-HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCC-----CHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHH
Q 015709 150 S-QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP-----DTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLM 222 (402)
Q Consensus 150 k-~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~-----~~~Ir~~Aa~vLg~~aqN-Np~~Q~~~le~g~L~~Ll 222 (402)
| ..||.-|+-...+.|....|.+.+----|..+|+.. .+-+|-.+..|||.++++ ++++-..+++.+.+|..+
T Consensus 72 RVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 72 RVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 3 567777777778899999999998766777777543 367999999999999984 677888889999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCChhcHH-------HHHhc-CcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015709 223 KMVKSSFVEEAVKALYTVSSLIRNNLAGQE-------MFYVE-AGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 223 ~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~-------~f~~~-gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~ 288 (402)
+.+..+++--+.-|.|-+.-++-+. .+.. .|... ..+..++.-+... .+.|+-+..+..-..|+
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd-~GL~YiC~t~eRF~av~~vL~~mV~~l~~~-ps~RLLKhiircYlRLs 223 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDD-TGLAYICQTYERFSHVAMILGKMVLQLSKE-PSARLLKHVVRCYLRLS 223 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHHT
T ss_pred HHHhhccHHHHHHHHHHHHHHhccc-hhHHHHHccHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHh
Confidence 9999999888899999888887542 3222 23221 1222233323222 25666666666666665
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=90.94 E-value=2.3 Score=47.49 Aligned_cols=172 Identities=10% Similarity=0.053 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC---hHhHHHHHHcCcHHHHHHh
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN---PLVQKQVLELGALSKLMKM 224 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN---p~~Q~~~le~g~L~~Ll~L 224 (402)
+++..+...+..++...-....+. .|.+..|...+.+.... +.|+.+++.+++.. +...-.++ +.+|.++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~ 103 (986)
T 2iw3_A 29 DNRHEIASEVASFLNGNIIEHDVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTN 103 (986)
T ss_dssp TTHHHHHHHHHHHHTSSCSSSSCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccccccccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHH
Confidence 445556666666554321111222 36677788888765444 99999999999654 22333333 679999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChh-cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhH
Q 015709 225 VKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 303 (402)
Q Consensus 225 L~s~~~~vr~kAl~ALS~LiR~~~~-~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l 303 (402)
+.+....||..|-+|+-+++...++ +.. .-++.|...|++.. .=..+.-|+.++..|+.. .+... ..
T Consensus 104 ~~dk~~~v~~aa~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~-kw~~k~~~l~~~~~~~~~-----~~~~~-~~ 171 (986)
T 2iw3_A 104 AGNKDKEIQSVASETLISIVNAVNPVAIK-----ALLPHLTNAIVETN-KWQEKIAILAAFSAMVDA-----AKDQV-AL 171 (986)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHSCGGGHH-----HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHH-----SHHHH-HH
T ss_pred hcCCchHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhcccc-chHHHHHHHHHHHHHHHH-----hHHHH-HH
Confidence 9888889999999999999988555 442 34788888887542 345788899999999852 11111 11
Q ss_pred HhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 304 RDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 304 ~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
.=..++|.+.+.+-...+++...|..++..++.
T Consensus 172 ~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 172 RMPELIPVLSETMWDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred hccchhcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence 123567777777777777777777776666654
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=90.93 E-value=0.65 Score=39.66 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=54.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 244 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~Li 244 (402)
+..|..-|++.++.++..|..+|-++++|. +..+..+.....+..|+++++..++.|+.|.+..|-+-.
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 445666678889999999999999999996 556767766777888888887777888888877666543
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=90.60 E-value=2.1 Score=47.48 Aligned_cols=147 Identities=12% Similarity=0.076 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC----C-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcH
Q 015709 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS----F-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 260 (402)
Q Consensus 186 ~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~----~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi 260 (402)
.+-..+..|++++|.++.......+.-.-...++.|+.+.... + +-++..++|+++...+-..... .++ ...+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l-~~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFL-RTVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHH-HHHH
Confidence 5667899999999999865443322111112444555543321 1 2345468899987554322211 222 1345
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhhcccc---cCC-CCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE---NMH-KVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 261 ~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~---~~~-~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
+.|...+.++ +++++..|++++.+|+...-. ... ....+.+ ..++..+..++..-+.+-...+..++..++.
T Consensus 543 ~~ll~~l~~~--~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~--~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 543 LKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6677777764 688999999999999963100 000 0000111 1234444455555566667778888888776
Q ss_pred CC
Q 015709 337 LR 338 (402)
Q Consensus 337 ~~ 338 (402)
..
T Consensus 619 ~~ 620 (1049)
T 3m1i_C 619 EE 620 (1049)
T ss_dssp TC
T ss_pred cC
Confidence 54
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=90.50 E-value=0.85 Score=39.38 Aligned_cols=72 Identities=11% Similarity=0.067 Sum_probs=57.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN 247 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s------~~~~vr~kAl~ALS~LiR~~ 247 (402)
+..|..-|++.++.++..|..+|-++++|. +..+..|.....+..|+++++. .+..|+.|++.-|-+-...+
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 445666678999999999999999999994 6788888888999999999974 35788888877666644333
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=90.35 E-value=11 Score=37.39 Aligned_cols=194 Identities=12% Similarity=0.080 Sum_probs=122.9
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 209 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q 209 (402)
-+.+-+++....... .++|+..|..+.+++-+.|- ..+ -.-++.++++-..++.+||...+..|+.++...++.-
T Consensus 24 ~~~v~~lln~A~~~~--~~~Kl~~L~q~~EL~l~~dp-sLl--~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~ 98 (386)
T 3o2t_A 24 SERVVDLLNQAALIT--NDSKITVLKQVQELIINKDP-TLL--DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL 98 (386)
T ss_dssp HHHHHHHHHHHHHCC--STHHHHHHHHHHHHHHTTCG-GGG--GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHhhhccC--hHHHHHHHHHHHHHHhccCH-HHH--HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555544432 26799999999997544332 222 2457889999888999999999999999997655443
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc--------HH-------HHHHhhcCCCccH
Q 015709 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--------DL-------MLQDILGNSSFEI 274 (402)
Q Consensus 210 ~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG--------i~-------~L~~lL~s~~~d~ 274 (402)
- .+++.|..|+.++++.+.++++.+.+++- +...+.++..++ |. .+...+.+. +.
T Consensus 99 ~-----~~l~~L~~LL~d~d~~V~K~~I~~~tslY---pl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~--n~ 168 (386)
T 3o2t_A 99 L-----KLIANLNMLLRDENVNVVKKAILTMTQLY---KVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSD--ND 168 (386)
T ss_dssp H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHH---HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCS--SH
T ss_pred H-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccC--Cc
Confidence 2 35788889998888888888888888874 444444444433 22 334445554 67
Q ss_pred HHHHHHHHHHHHHhhcccc-cCCCC--------------------c-chhHH--hCCcHHHHHHhhcCC--ChHHHHHHH
Q 015709 275 RLHRKAVSLVGDLAKCQLE-NMHKV--------------------E-PPLFR--DRFFLKSVVDLTASA--DLDLQEKAL 328 (402)
Q Consensus 275 klq~kA~~lL~~L~~~~l~-~~~~~--------------------~-~~~l~--~~g~v~~Lv~lL~~~--d~dv~E~aL 328 (402)
.+|..++-++..++..+-. ..++. . ...+. -.+++..|++.+..+ +.-..-.++
T Consensus 169 GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~l 248 (386)
T 3o2t_A 169 GIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTAL 248 (386)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHH
Confidence 7899999888877642210 00100 0 11222 246777788888764 344555677
Q ss_pred HHHHHHhcCC
Q 015709 329 AAIKNLLQLR 338 (402)
Q Consensus 329 ~aL~~L~~~~ 338 (402)
++|..|+...
T Consensus 249 nsLa~Iak~R 258 (386)
T 3o2t_A 249 GSLANIARQR 258 (386)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhc
Confidence 7777777543
|
| >1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* | Back alignment and structure |
|---|
Probab=90.04 E-value=0.79 Score=40.54 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=58.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN 247 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s------~~~~vr~kAl~ALS~LiR~~ 247 (402)
+..|..-|++.++.++..|..+|-++++|. +..+..|.....+..|+++++. .+..|+.|++..|-.-...+
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 445667788999999999999999999995 5688888888899999999973 24688888887777654433
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=89.86 E-value=0.87 Score=39.94 Aligned_cols=69 Identities=13% Similarity=0.146 Sum_probs=54.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHh
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLI 244 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s-~~~~vr~kAl~ALS~Li 244 (402)
+..|..-|++.++.++..|..+|-++++|. +..+..|.....+..|+++++. .++.|+.|++..|-.-.
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 335566678899999999999999999995 6688778777888889998875 34788888877665543
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=89.46 E-value=1.8 Score=37.35 Aligned_cols=72 Identities=15% Similarity=0.087 Sum_probs=57.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN 247 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp-~~Q~~~le~g~L~~Ll~LL~s------~~~~vr~kAl~ALS~LiR~~ 247 (402)
+..|..-|++.++.++..|..+|-++++|.. ..+..|.....+..|+++++. .+..|+.|.+..|-+-...+
T Consensus 50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4455666788999999999999999999964 467778778889999999974 35788888887777655444
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=88.91 E-value=13 Score=41.94 Aligned_cols=108 Identities=13% Similarity=0.074 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCC-
Q 015709 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNN- 205 (402)
Q Consensus 128 ~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNN- 205 (402)
=|...+..++..+-++ +.+.|..|-+.|..+-.+. ++|..+..+|. +.++.+|..|+.+|-+..+.+
T Consensus 25 ~Dv~~Le~lv~~ly~p--~~~~r~qA~~~L~q~q~sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W 93 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHG--EGAQQRMAQEVLTHLKEHP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRW 93 (1073)
T ss_dssp CSHHHHHHHHHTTTCS--SHHHHHHHHHHHHTSSCCS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTG
T ss_pred CCHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence 3556666666666665 4567888888887765544 36777777774 468899999999999988752
Q ss_pred ---hHhHHHHHHcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcC
Q 015709 206 ---PLVQKQVLELGALSKLMKMVKSS-----FVEEAVKALYTVSSLIRN 246 (402)
Q Consensus 206 ---p~~Q~~~le~g~L~~Ll~LL~s~-----~~~vr~kAl~ALS~LiR~ 246 (402)
|..+...++...+..+.+...++ ++.++.|...+++.+++.
T Consensus 94 ~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~ 142 (1073)
T 3gjx_A 94 KILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQ 142 (1073)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHH
Confidence 44555555555666666654332 355667777777776654
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=88.78 E-value=8 Score=43.25 Aligned_cols=110 Identities=12% Similarity=0.073 Sum_probs=70.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcC
Q 015709 126 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQN 204 (402)
Q Consensus 126 ~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqN 204 (402)
.|-|.+.+..++..+-++. .+.|..|-+.|..+-.+. ++|..+..+| ++.++.+|..|+.++-+..+.
T Consensus 11 ~~~dv~~Le~av~~ly~p~--~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~ 79 (1023)
T 4hat_C 11 NDLDIALLDQVVSTFYQGS--GVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITR 79 (1023)
T ss_dssp SCCCHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHCT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHcCc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 3445666666777766654 246777777776655543 4677777777 456789999999999888874
Q ss_pred ----ChHhHHHHHHcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcC
Q 015709 205 ----NPLVQKQVLELGALSKLMKMVKSS-----FVEEAVKALYTVSSLIRN 246 (402)
Q Consensus 205 ----Np~~Q~~~le~g~L~~Ll~LL~s~-----~~~vr~kAl~ALS~LiR~ 246 (402)
-|..+...++...+..+.+...++ ...++.|...+++.+++.
T Consensus 80 ~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~ 130 (1023)
T 4hat_C 80 KWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQ 130 (1023)
T ss_dssp HGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHH
Confidence 244455555555666666554332 234566777777776654
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=88.64 E-value=0.18 Score=47.18 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=27.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHH
Q 015709 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYT 239 (402)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~A 239 (402)
..|..+++++++.||..|+..++ .+.|..++++++..||..+...
T Consensus 77 ~~l~~L~~D~~~~VR~~aA~~L~------------------~~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 77 EALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp GGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHHHccCcCHHHHHHHHHHCC------------------HHHHHHHHcCCCHHHHHHHHHh
Confidence 34556778888889888886431 1345555555556666555553
|
| >3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.55 E-value=3.8 Score=39.64 Aligned_cols=109 Identities=17% Similarity=0.126 Sum_probs=69.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC------cHHHHHHhhcCCC-ccHHHHHHHHHHHHHHhh
Q 015709 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA------GDLMLQDILGNSS-FEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 217 ~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g------Gi~~L~~lL~s~~-~d~klq~kA~~lL~~L~~ 289 (402)
.+..|+ +..+.++.++.+|...|++.+||||++...+.+.- -.+-|..++...+ ....++.+-+..|.-|+.
T Consensus 72 lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~ 150 (315)
T 3qml_C 72 LLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPV 150 (315)
T ss_dssp HHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCC
T ss_pred HHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhc
Confidence 344444 33344567899999999999999999988665421 1122333333220 123466677788887774
Q ss_pred cccccCCCCcchhHHhCCcHHHHHHhhcCC--ChHHHHHHHHHHHHHhc
Q 015709 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 290 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~~ 336 (402)
++. .|. ...+..|.+++... ++.++.+++..+.-+..
T Consensus 151 ------~~~---~F~-~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 151 ------TSE---DLP-IYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp ------CST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred ------ChH---hhh-hccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 222 122 33457777777666 99999999999988773
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=87.97 E-value=12 Score=41.53 Aligned_cols=56 Identities=9% Similarity=0.032 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 274 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 274 ~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
..++..++.++.+.+.. -....+.+..+++.+.+.+. .++++++.|+.+|..++..
T Consensus 209 ~~~~~~aL~~l~~~l~w-------i~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 209 SSLIVATLESLLRYLHW-------IPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHHHHHHHHHHHHTTT-------SCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhh-------CCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 34555566665555432 11223445667776663222 2788999999999999876
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.95 E-value=17 Score=33.36 Aligned_cols=145 Identities=14% Similarity=0.029 Sum_probs=91.8
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH--H-HHHcC-cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc---H
Q 015709 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQK--Q-VLELG-ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG---Q 251 (402)
Q Consensus 179 Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~--~-~le~g-~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~---~ 251 (402)
|-.-|.|.+=..|..|..-|..+.++++.... . +...+ ..+.+-+.+.+.+..+..+++-+|..++...... .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 55678899999999999999998887664321 1 11233 3444556777878899999999999988764321 1
Q ss_pred HHHH--hcCcHHHHHH-hhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHH
Q 015709 252 EMFY--VEAGDLMLQD-ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKAL 328 (402)
Q Consensus 252 ~~f~--~~gGi~~L~~-lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL 328 (402)
..+. -...++.|+. +|.+. ..+++..|..++..++.. . .... .+++.+...+.+.++.++..++
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~--k~~~~~~a~~~l~~~~~~-----~-~~~~-----~~~e~l~~~l~~Knpkv~~~~l 160 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSS--RATTKTQSMSCILSLCGL-----D-TSIT-----QSVELVIPFFEKKLPKLIAAAA 160 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCC--CHHHHHHHHHHHHHHHHT-----S-SSSH-----HHHHHHGGGGGCSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHh-----c-CcHH-----HHHHHHHHHHhccCHHHHHHHH
Confidence 1221 1233455553 46654 467888888888877742 1 1111 1345566677788888888888
Q ss_pred HHHHHHhc
Q 015709 329 AAIKNLLQ 336 (402)
Q Consensus 329 ~aL~~L~~ 336 (402)
..|..++.
T Consensus 161 ~~l~~~l~ 168 (278)
T 4ffb_C 161 NCVYELMA 168 (278)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877764
|
| >1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=86.92 E-value=1.9 Score=37.35 Aligned_cols=68 Identities=12% Similarity=0.055 Sum_probs=53.4
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHH-HHHhhcC---CCHHHHHHHHHHHHHH
Q 015709 176 LSVLVGQLN-HPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSK-LMKMVKS---SFVEEAVKALYTVSSL 243 (402)
Q Consensus 176 l~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~-Ll~LL~s---~~~~vr~kAl~ALS~L 243 (402)
+..|..-|+ +.++.++..|..+|-++++|. +..+..|.....+.. |++++.. .+..|+.|++..|-.-
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 345666676 489999999999999999996 788888888888998 8898853 2357888887666553
|
| >1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 | Back alignment and structure |
|---|
Probab=86.42 E-value=1.8 Score=39.46 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=53.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHh
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLI 244 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s~-~~~vr~kAl~ALS~Li 244 (402)
+..|..-|++.++.++..|..+|-++++|. +..+..|.....+..|++++.+. +..|+.|++.-|-.-.
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 345666778999999999999999999996 55777777777888888888754 3678887776655543
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=86.38 E-value=2.3 Score=36.22 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHH
Q 015709 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 314 (402)
Q Consensus 235 kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~ 314 (402)
..+-.|+-+++..+.+.. .++..|..-|+++ ++.++..|+.++-.++.+ .++.+...+.+..++..++.
T Consensus 24 ~~ileicD~I~~~~~~~k-----~a~rai~Krl~~~--n~~~ql~AL~LLe~~vkN----cG~~f~~evas~~Fl~el~~ 92 (140)
T 3ldz_A 24 GLILDICDKVGQSRTGPK-----DCLRSIMRRVNHK--DPHVAMQALTLLGACVSN----CGKIFHLEVCSRDFASEVSN 92 (140)
T ss_dssp HHHHHHHHHHTTSTTHHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----SCHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCHH-----HHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHh----cCHHHHHHHhhHHHHHHHHH
Confidence 345567777877654333 2456677777775 678899999999887753 44455556667778888888
Q ss_pred hhcCCChHHHHHHHHHHHHHh
Q 015709 315 LTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 315 lL~~~d~dv~E~aL~aL~~L~ 335 (402)
++...++.|+++++..+....
T Consensus 93 l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 93 VLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHSCHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHH
Confidence 887789999999998887665
|
| >3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* | Back alignment and structure |
|---|
Probab=86.05 E-value=1.6 Score=40.10 Aligned_cols=70 Identities=14% Similarity=0.221 Sum_probs=54.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhc
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIR 245 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp-~~Q~~~le~g~L~~Ll~LL~s~-~~~vr~kAl~ALS~LiR 245 (402)
+..|..-|++.++.++..|+.+|-++++|.. ..+..|.....+..|.++++.. +..|+.|++..|-.-..
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4456677789999999999999999999954 4677777777888888888653 46788888777766543
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=86.04 E-value=0.29 Score=45.84 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=15.8
Q ss_pred HHHHHhcCCCCHHHHHHHHHH
Q 015709 177 SVLVGQLNHPDTDIRKISAWI 197 (402)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~v 197 (402)
+.|..+++++++.||..++.-
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHh
Confidence 456677788888888887774
|
| >3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* | Back alignment and structure |
|---|
Probab=84.95 E-value=6.5 Score=39.15 Aligned_cols=184 Identities=14% Similarity=0.188 Sum_probs=124.4
Q ss_pred HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc-CCC
Q 015709 151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSF 229 (402)
Q Consensus 151 ~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~-s~~ 229 (402)
..++|-|--+.++.+-.+-|++..|+..+-...+.++.++-...+..+-.++-...-+.. --...+|.+++.+. +++
T Consensus 261 tR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~h~e 338 (619)
T 3c2g_A 261 IRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEIHPD 338 (619)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhccCCC
Confidence 466777777777776667899999999999999999999999999988777643211111 01256888888776 455
Q ss_pred HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc-CCC----ccHHHHHHHHHHHHHHhhc--------c-cccC
Q 015709 230 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG-NSS----FEIRLHRKAVSLVGDLAKC--------Q-LENM 295 (402)
Q Consensus 230 ~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~-s~~----~d~klq~kA~~lL~~L~~~--------~-l~~~ 295 (402)
+++...-..-|||.+.|..+..+.-+..|++..|-..+. ++. .+-.-+..|+..++|=... . ..++
T Consensus 339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NG 418 (619)
T 3c2g_A 339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNG 418 (619)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTS
T ss_pred cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCC
Confidence 788888899999999999888888889999999988754 211 2333355566666553321 0 0011
Q ss_pred C-----C---CcchhHHhCCcHHHHHHhhcCC--C----hHHHHHHHHHHHHHhc
Q 015709 296 H-----K---VEPPLFRDRFFLKSVVDLTASA--D----LDLQEKALAAIKNLLQ 336 (402)
Q Consensus 296 ~-----~---~~~~~l~~~g~v~~Lv~lL~~~--d----~dv~E~aL~aL~~L~~ 336 (402)
. + ...-.|++..+++.|..+|+.+ | .+++...++...-++.
T Consensus 419 qr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR 473 (619)
T 3c2g_A 419 ETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR 473 (619)
T ss_dssp CCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT
T ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc
Confidence 1 0 1122456778889999988765 2 2456666665554443
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=84.67 E-value=4.4 Score=38.27 Aligned_cols=101 Identities=14% Similarity=0.116 Sum_probs=79.3
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
-+|.|+.=+.++...+|..+-.++..+.+--|. ...++.++.-+++.+.-+|..++..|++++..+...
T Consensus 133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---- 201 (266)
T 2of3_A 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---- 201 (266)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----
Confidence 468888888888999999999999888753222 224677888888888888999999999998765443
Q ss_pred HhcCcH---HHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 255 YVEAGD---LMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 255 ~~~gGi---~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
...++ +.+..++.++ |..+|.-|+.++..+..
T Consensus 202 -~~~~l~~~~~ia~ll~D~--d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 202 -PLKSLSVEKTVAPFVGDK--DVNVRNAAINVLVACFK 236 (266)
T ss_dssp -GGGGGCHHHHHGGGGGCS--SHHHHHHHHHHHHHHHH
T ss_pred -ccccccchHHHHHHHcCC--CHHHHHHHHHHHHHHHH
Confidence 23478 9999999986 67789999988887764
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.39 E-value=14 Score=35.38 Aligned_cols=148 Identities=13% Similarity=0.010 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhc--CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC--
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL--GGLSVLVGQLNHPDTDIRKISAWILGKASQNN-- 205 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~l--Ggl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-- 205 (402)
..++..++..+.+ ...+-.+.-++..+.++........-+... ..+..+..++.+++..+|..++.++-|.+--+
T Consensus 146 ~~l~~~l~~~~~~-~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~ 224 (304)
T 3ebb_A 146 AQFSSHLINLLNP-KGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHK 224 (304)
T ss_dssp HHHHHHHHHTTCT-TSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCC-CCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhh
Confidence 3445445555443 335667888899999988876554444432 12333445556689999999999998887421
Q ss_pred -hHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015709 206 -PLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 206 -p~~Q~~~le~g~L~~Ll~LL~s~-~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
+.. +.. ...+..+..++... +.+....++-||++++...+...+.....|.-..+..+.+.. .+.|+..-+..
T Consensus 225 ~~~~-~~~--~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~-~~~kv~~~~~~ 299 (304)
T 3ebb_A 225 DHNI-EGK--AQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVS-EPAKVSECCRF 299 (304)
T ss_dssp SCCH-HHH--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCC-SSHHHHHHHHH
T ss_pred cCCc-hHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCC-CchhHHHHHHH
Confidence 111 111 11455556666543 467788999999999987554444333445555555555543 46776654433
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=84.01 E-value=2.7 Score=36.24 Aligned_cols=109 Identities=10% Similarity=0.111 Sum_probs=75.6
Q ss_pred cHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccC
Q 015709 217 ALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (402)
Q Consensus 217 ~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~ 295 (402)
.+..++.-..++. .+.--..+-.|+-+++..+.+.. .++..|..-++++ ++.++..|+.++-.++.+ .
T Consensus 11 ~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk-----~a~ral~krl~~~--n~~v~l~AL~LLe~cvkN----C 79 (149)
T 3g2s_A 11 TLEARINRATNPLNKELDWASINGFCEQLNEDFEGPP-----LATRLLAHKIQSP--QEWEAIQALTVLETCMKS----C 79 (149)
T ss_dssp CHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----C
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHh----c
Confidence 3555555555443 12223456677778877654333 2455677777765 788999999999988763 4
Q ss_pred CCCcchhHHhCCcHHHHHHhhcC------CChHHHHHHHHHHHHHhc
Q 015709 296 HKVEPPLFRDRFFLKSVVDLTAS------ADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 296 ~~~~~~~l~~~g~v~~Lv~lL~~------~d~dv~E~aL~aL~~L~~ 336 (402)
.+.+...+.+..++..|+.++.. .+..|+++++..+..-..
T Consensus 80 G~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 80 GKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp CHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 55666677788899999999863 578999999988887753
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.80 E-value=13 Score=42.19 Aligned_cols=140 Identities=11% Similarity=-0.052 Sum_probs=87.5
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc--CCCCHHHHHHHHHHHHHHhcCC----h
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL--NHPDTDIRKISAWILGKASQNN----P 206 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL--~s~~~~Ir~~Aa~vLg~~aqNN----p 206 (402)
+.+++..+-++..+.+.|..|-+.|..+-.+. .+|..+...| .+.++.+|..|+.++-+.++.+ |
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~ 83 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMS 83 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSC
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCC
Confidence 44556666666666677888887777654333 2666666544 4568999999999999988652 3
Q ss_pred HhHHHHHHcCcHHHHHHhhcC---CCHHHHHHHHHHHHHHhcC-ChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015709 207 LVQKQVLELGALSKLMKMVKS---SFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 207 ~~Q~~~le~g~L~~Ll~LL~s---~~~~vr~kAl~ALS~LiR~-~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
.-+...++...+..+...... .+..++.+...+|+.+++. +|.... +-++-|+.+++++ ...+.-++.
T Consensus 84 ~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp-----~ll~~L~~~~~~~---~~~~e~~L~ 155 (1204)
T 3a6p_A 84 RLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWP-----DMLIELDTLSKQG---ETQTELVMF 155 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCT-----THHHHHHHHHHTC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccch-----HHHHHHHHHhcCC---HHHHHHHHH
Confidence 344445555556655544221 3467899999999998876 342222 3345555555542 233555666
Q ss_pred HHHHHhh
Q 015709 283 LVGDLAK 289 (402)
Q Consensus 283 lL~~L~~ 289 (402)
+|..|+.
T Consensus 156 iL~~L~E 162 (1204)
T 3a6p_A 156 ILLRLAE 162 (1204)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=81.57 E-value=3.4 Score=35.51 Aligned_cols=89 Identities=8% Similarity=0.087 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHh
Q 015709 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL 315 (402)
Q Consensus 236 Al~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~l 315 (402)
..-.|+-+++..+.+.. .++..|..-|+++ ++.++..|+.++-.++.+ .++.+...+.+..++..|+.+
T Consensus 21 ~~leicD~I~~~~~~~k-----~a~rai~krl~~~--n~~vql~AL~LLe~~vkN----CG~~fh~evas~~Fl~eL~kl 89 (148)
T 1mhq_A 21 AIQNFCEQVNTDPNGPT-----HAPWLLAHKIQSP--QEKEALYALTVLEMCMNH----CGEKFHSEVAKFRFLNELIKV 89 (148)
T ss_dssp HHHHHHHHHHHSSHHHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----SCHHHHHHHTSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCccHH-----HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHH----cCHHHHHHHhhHHHHHHHHHH
Confidence 34466667766543322 2456677777775 688999999999988763 455666777788999999999
Q ss_pred hcC------CChHHHHHHHHHHHHHh
Q 015709 316 TAS------ADLDLQEKALAAIKNLL 335 (402)
Q Consensus 316 L~~------~d~dv~E~aL~aL~~L~ 335 (402)
+.. .+..++++++..+..-+
T Consensus 90 ~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 90 LSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp TCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HccccCCCCCCHHHHHHHHHHHHHHH
Confidence 874 37899999998888765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 402 | ||||
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 4e-18 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-06 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 4e-06 |
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.2 bits (199), Expect = 4e-18
Identities = 62/263 (23%), Positives = 114/263 (43%), Gaps = 13/263 (4%)
Query: 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGG 175
E++++ L+ S + ++ + AL+ L L E +DNA D +L G
Sbjct: 3 EVEQMKSCLRVLSQPMPPTAGEAE---QAADQQEREGALELLADLCENMDNAADFCQLSG 59
Query: 176 LSVLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEA 233
+ +LVG+ L +R +A ++G SQN +Q+QVL LGAL KL++++ +
Sbjct: 60 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 119
Query: 234 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 293
VKAL+ +S L+R AG F G +L + ++ K+ L+ +L E
Sbjct: 120 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL--KVKSAFLLQNLLVGHPE 177
Query: 294 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL-RTTEALVLKDFCGLD 352
+ ++ +V L + E L A+ +L+ + GL+
Sbjct: 178 HKGT-----LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLE 232
Query: 353 TALERLRQQLQEVMLEEDQRDYA 375
L Q LQ+ +++ ++
Sbjct: 233 ELLRHRCQLLQQHEEYQEELEFC 255
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (110), Expect = 2e-06
Identities = 15/107 (14%), Positives = 43/107 (40%)
Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
+ +LGG+ LV L P+ ++++ +A L + + + + + + +
Sbjct: 35 SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSL 94
Query: 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271
++ + E K L + + + +E +A ++ ++ S
Sbjct: 95 LRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFS 141
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (108), Expect = 4e-06
Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTL----SLEDSQRALQELLILVEPIDNANDLSK 172
I L++ L + ++ + E + L IL + N +
Sbjct: 399 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRG 458
Query: 173 LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---F 229
L + + V L P +I++++A +L + +Q + + + GA + L +++ S
Sbjct: 459 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGV 517
Query: 230 VEEAVKALYTVS 241
A L+ +S
Sbjct: 518 ATYAAAVLFRMS 529
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 402 | |||
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 100.0 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.76 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.75 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.74 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.73 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.73 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.61 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.3 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.27 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 98.16 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.06 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.03 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.95 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.93 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.87 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.8 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.74 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.73 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.58 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.29 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.25 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.25 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.23 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.03 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 96.43 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 96.29 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 95.82 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 95.79 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 95.35 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 95.2 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 95.16 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 95.02 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 94.57 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 93.53 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 92.81 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 92.61 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 92.38 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 91.22 | |
| d1juqa_ | 151 | ADP-ribosylation factor binding protein Gga3 {Huma | 91.09 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 90.29 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 87.46 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 86.8 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 85.76 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 83.52 |
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-32 Score=257.62 Aligned_cols=244 Identities=25% Similarity=0.325 Sum_probs=209.6
Q ss_pred CHHHHHHHHHHHhhcCC----------CCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH-hcCCCCHHHHHHHHH
Q 015709 128 SDAQLIQIAIDDLNNST----------LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG-QLNHPDTDIRKISAW 196 (402)
Q Consensus 128 ~d~~lMk~al~~L~~~~----------~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~-lL~s~~~~Ir~~Aa~ 196 (402)
.|.+.||+++.++.++. .+.+.+..|++.|.+|+++.|||++|+++||+++++. +|+++++++|..|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~ 81 (264)
T d1xqra1 2 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQ 81 (264)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhccCcchHHHhhcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHH
Confidence 36788999999998873 3567899999999999999999999999999999986 779999999999999
Q ss_pred HHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHH
Q 015709 197 ILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIR 275 (402)
Q Consensus 197 vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~-~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~k 275 (402)
+|+++++|||.+|..+.+.|++|.|++++.++ ++.++.+|++||+++++++++++..|...||++.|+++++++ +.+
T Consensus 82 ~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~--~~~ 159 (264)
T d1xqra1 82 LIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQK 159 (264)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHH
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC--chH
Confidence 99999999999999999999999999999754 578999999999999999999999999999999999999986 678
Q ss_pred HHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHh-cCCcHHH
Q 015709 276 LHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKD-FCGLDTA 354 (402)
Q Consensus 276 lq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~-~~GL~~~ 354 (402)
++.+++++|.+|+.. +++.+..+.+.|+++.|+++|.++|++++++++.+|.+|+...+.....+.. ..++...
T Consensus 160 ~~~~a~~~L~~l~~~-----~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~l~~~~~ 234 (264)
T d1xqra1 160 LKVKSAFLLQNLLVG-----HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEEL 234 (264)
T ss_dssp HHHHHHHHHHHHHHH-----CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHH
T ss_pred HHHHHHHHHHHHHhc-----cHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHH
Confidence 999999999999863 5788889999999999999999999999999999999999887666555542 2245555
Q ss_pred HHHHHHHhHHhhhhhhHhhhHHHH
Q 015709 355 LERLRQQLQEVMLEEDQRDYAMDV 378 (402)
Q Consensus 355 L~~L~~~~~~l~~~e~~~~y~~~l 378 (402)
|..+.+.+.......+..+|++.+
T Consensus 235 L~~~~~~~~~~~~~~e~~~~~~~l 258 (264)
T d1xqra1 235 LRHRCQLLQQHEEYQEELEFCEKL 258 (264)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHH
Confidence 555544444443344455666555
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=2.9e-17 Score=165.60 Aligned_cols=221 Identities=16% Similarity=0.207 Sum_probs=184.9
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
..+...+..|.+.. +.+.+..|...|..+..+.++...+.+.||+++|+.+|++++++++..|+++|++++.+++..|.
T Consensus 59 ~~v~~l~~~L~~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~ 137 (529)
T d1jdha_ 59 QMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 137 (529)
T ss_dssp HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred hHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhh
Confidence 45666677776654 56788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.+.+.|++|+|+.+++++++.++..++++|.++..+++.....+...||++.|+.++..+. ...++..++.++.+++..
T Consensus 138 ~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~~~~~l~~ls~~ 216 (529)
T d1jdha_ 138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTS
T ss_pred HHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhh-hHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999998888899999999999999998653 566888999999988742
Q ss_pred ccccCCCCcchhHHh---------------------------------------CCcHHHHHHhhcCCChHHHHHHHHHH
Q 015709 291 QLENMHKVEPPLFRD---------------------------------------RFFLKSVVDLTASADLDLQEKALAAI 331 (402)
Q Consensus 291 ~l~~~~~~~~~~l~~---------------------------------------~g~v~~Lv~lL~~~d~dv~E~aL~aL 331 (402)
++.+..+.+ .|+++.|+.++.++|..+++.++.+|
T Consensus 217 ------~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L 290 (529)
T d1jdha_ 217 ------SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 290 (529)
T ss_dssp ------TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ------ccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHH
Confidence 222222222 36677777778888888888899999
Q ss_pred HHHhcCChhhHHHHHhcCCcHHHHHHHH
Q 015709 332 KNLLQLRTTEALVLKDFCGLDTALERLR 359 (402)
Q Consensus 332 ~~L~~~~~~~~~~~~~~~GL~~~L~~L~ 359 (402)
.+|+..++..+..+.+.+|+...+..+.
T Consensus 291 ~~l~~~~~~~~~~i~~~~~i~~Li~~l~ 318 (529)
T d1jdha_ 291 SNLTCNNYKNKMMVCQVGGIEALVRTVL 318 (529)
T ss_dssp HHHTTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HhhccchhHHHHHHHHhhhHHHHHHHHH
Confidence 9988777666666665777766666654
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.75 E-value=1.1e-16 Score=155.79 Aligned_cols=220 Identities=16% Similarity=0.195 Sum_probs=179.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc--hhHHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChHhH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN--ANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQ 209 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn--A~~l~~lGgl~~Li~lL~s-~~~~Ir~~Aa~vLg~~aqNNp~~Q 209 (402)
++++++.+.++ +++.+..|+..+..++...+| ...+.+.|++|+|+++|++ +++++|..|+++|++++..++...
T Consensus 15 i~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~ 92 (434)
T d1q1sc_ 15 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 92 (434)
T ss_dssp HHHHHHHHTSS--CHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence 45556666655 678899999999887754444 4678999999999999965 678999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC---ccHHHHHHHHHHHHH
Q 015709 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS---FEIRLHRKAVSLVGD 286 (402)
Q Consensus 210 ~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~---~d~klq~kA~~lL~~ 286 (402)
..+++.|++|.|+.++++++++++..|+++|++++.+++.....+.+.||++.|+.++..+. ......+.+++++.+
T Consensus 93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~ 172 (434)
T d1q1sc_ 93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 172 (434)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888899999999999999998653 234566788999999
Q ss_pred HhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHH
Q 015709 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (402)
Q Consensus 287 L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~ 359 (402)
++.. ...........++++.++.++.++|++++..++.++.+|+.........+...+++...++.++
T Consensus 173 ~~~~-----~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~ 240 (434)
T d1q1sc_ 173 LCRN-----KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 240 (434)
T ss_dssp HTCC-----CTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred Hhhc-----ccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccc
Confidence 8853 2334444456788999999999999999999999999999887655555553444444444443
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.74 E-value=8.7e-17 Score=156.39 Aligned_cols=206 Identities=15% Similarity=0.168 Sum_probs=176.6
Q ss_pred CHHHHHHHHHHHHHccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015709 146 SLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDn-A~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~L 224 (402)
+++.+..++..|.+++...+. ...+...|+++.|+.+++++++.++..|+++|++++.+++.....+++.|+++.|+.+
T Consensus 201 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~l 280 (434)
T d1q1sc_ 201 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL 280 (434)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHH
T ss_pred ccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHh
Confidence 567888899999998876544 4456778999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHH
Q 015709 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (402)
Q Consensus 225 L~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~ 304 (402)
+++.+++++..|+++|++++++++.....+.+.|+++.++.++.++ +.+++..|++++.+++.. .+++....+.
T Consensus 281 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~--~~~v~~~a~~~l~nl~~~----~~~~~~~~l~ 354 (434)
T d1q1sc_ 281 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAITNYTSG----GTVEQIVYLV 354 (434)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----SCHHHHHHHH
T ss_pred hcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc--ChHHHHHHHHHHHHHHhc----CCHHHHHHHH
Confidence 9999999999999999999999988889999999999999999986 678999999999999864 3455667788
Q ss_pred hCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC------hhhHHHHHhcCCcHHHHHHH
Q 015709 305 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR------TTEALVLKDFCGLDTALERL 358 (402)
Q Consensus 305 ~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~------~~~~~~~~~~~GL~~~L~~L 358 (402)
+.|+++.|+++|.++|++++..++.+|.+|+... +.-+..+. ..|+.+.++.|
T Consensus 355 ~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~-~~~~~~~i~~L 413 (434)
T d1q1sc_ 355 HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE-ECGGLDKIEAL 413 (434)
T ss_dssp HTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH-HTTSHHHHHHH
T ss_pred HCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH-HcCCHHHHHHH
Confidence 9999999999999999999999999999987531 11234555 44444455555
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=4.4e-16 Score=156.07 Aligned_cols=217 Identities=15% Similarity=0.141 Sum_probs=179.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHccCCC--CchhHHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~i--DnA~~l~~lGgl~~Li~lL~s-~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
.+.+..+.+. +.+.+..|+..+..++... ...+.+.+.|++|+|+.+|.+ .++.+|..|+|+|++++..++....
T Consensus 79 ~~~~~~~~s~--~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~ 156 (503)
T d1wa5b_ 79 PQMTQQLNSD--DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 156 (503)
T ss_dssp HHHHHHHSCS--SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3344444333 5678889999999877433 346789999999999999975 5788999999999999999999999
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.+.+.|++|.|+.++.+++.+++..|+|+|++++.+++..+..+...||++.|+.++.+. +..+++.++|++.+|+..
T Consensus 157 ~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~--~~~~~~~~~~~l~nl~~~ 234 (503)
T d1wa5b_ 157 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN--KPSLIRTATWTLSNLCRG 234 (503)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC--CHHHHHHHHHHHHHHHCC
T ss_pred HHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccC--CHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999986 567899999999999963
Q ss_pred ccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHH
Q 015709 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (402)
Q Consensus 291 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~ 359 (402)
...........++++.++.++.++|.+++..++.++..|+....+....+.+.+.+...+..|+
T Consensus 235 -----~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~ 298 (503)
T d1wa5b_ 235 -----KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 298 (503)
T ss_dssp -----SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred -----CccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhccc
Confidence 2233344456789999999999999999999999999999887666565554555544444443
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=1.5e-16 Score=159.45 Aligned_cols=217 Identities=15% Similarity=0.148 Sum_probs=182.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
+..++..+... .+.+-+..|+..|.+++... +....+...|+++.++.+|.+++.+++..|+|+|++++..++.++..
T Consensus 121 i~~Lv~~l~~~-~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~ 199 (503)
T d1wa5b_ 121 VPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 199 (503)
T ss_dssp HHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHH
Confidence 33455555543 35567888999999988654 45667888999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc
Q 015709 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~ 291 (402)
+++.|++++|+.++.+....++..++|+|++++++..+........++++.|..++.++ +..++..+++++.+|+.
T Consensus 200 l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~--d~~~~~~~~~~l~~l~~-- 275 (503)
T d1wa5b_ 200 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSD-- 275 (503)
T ss_dssp HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHS--
T ss_pred HHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHhhcc--
Confidence 99999999999999999899999999999999998766666566789999999999986 56789999999999984
Q ss_pred cccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHH
Q 015709 292 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358 (402)
Q Consensus 292 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L 358 (402)
.+++....+.+.|+++.++.++.+++..++..++.++.+++.........+. ..|+.+.|..|
T Consensus 276 ---~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~-~~~~l~~l~~l 338 (503)
T d1wa5b_ 276 ---GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVI-NAGVLPALRLL 338 (503)
T ss_dssp ---SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHH
T ss_pred ---CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhh-ccchHHHHHHH
Confidence 2445667788999999999999999999999999999999988765555555 45655554443
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.1e-16 Score=150.42 Aligned_cols=179 Identities=13% Similarity=0.158 Sum_probs=144.9
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
.+|.|+++|+++++++|..|+++|+++|.+|++.|..+.+.|++|+|+++|+++++.++..|++||.+++.+++.++..+
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i 82 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhh---------------cCC
Q 015709 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT---------------ASA 319 (402)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL---------------~~~ 319 (402)
.+.||++.|+.++.+. .+..++..|++++.+++.. ......+...|+.+.+..++ ...
T Consensus 83 ~~~g~v~~li~~l~~~-~~~~~~~~a~~~l~~l~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 155 (457)
T d1xm9a1 83 RRQNGIREAVSLLRRT-GNAEIQKQLTGLLWNLSST------DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHTTCHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTS------SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHCCChHHHHHHHhcc-CcHHHHHHHHHHHHHHHhh------hhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccc
Confidence 9999999999999865 3677999999999999852 33444444444444333322 345
Q ss_pred ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHH-HHHHHHHH
Q 015709 320 DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDT-ALERLRQQ 361 (402)
Q Consensus 320 d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~-~L~~L~~~ 361 (402)
+.++++.++.++..+....+ .+.......|+-+ .+..++..
T Consensus 156 ~~~v~~~a~~~l~~~~~~~~-~~~~~~~~~~~i~~l~~ll~~~ 197 (457)
T d1xm9a1 156 DPEVFFNATGCLRNLSSADA-GRQTMRNYSGLIDSLMAYVQNC 197 (457)
T ss_dssp CHHHHHHHHHHHHHHTTSHH-HHHHHTTSTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCch-HHHHHHHHhccHHHHHHHHhcc
Confidence 88999999999999988764 4444443556544 44444433
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.2e-15 Score=153.50 Aligned_cols=215 Identities=13% Similarity=0.090 Sum_probs=176.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhc-CCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL-GGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~l-Ggl~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
+..+++.|++. +.+.+..|+..+..+...-.....+... |+++.|+.+|. .++++++..|+++|.+++. ++..+.
T Consensus 19 ip~L~~lL~~~--~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~ 95 (529)
T d1jdha_ 19 IPELTKLLNDE--DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLL 95 (529)
T ss_dssp HHHHHHHHTCS--CHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHH
Confidence 34455566543 5678888888888887655555566665 56899999995 4679999999999999996 677889
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.+++.|++|.|+.+|+++++.++..|+++|++++.+++..++.|.+.||++.|+.+|+++ +..++..+++++.+|+.
T Consensus 96 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~- 172 (529)
T d1jdha_ 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAY- 172 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHT-
T ss_pred HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHcc--ChHHHHHHHHHHHHHhh-
Confidence 999999999999999999999999999999999999999999999999999999999986 67899999999999984
Q ss_pred ccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHH
Q 015709 291 QLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358 (402)
Q Consensus 291 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L 358 (402)
.++..+..+.+.|.++.++.++... +..+++.+..++.++....+ .+..+.+.+++.+....|
T Consensus 173 ----~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~-~~~~~~~~g~~~~L~~ll 236 (529)
T d1jdha_ 173 ----GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHL 236 (529)
T ss_dssp ----TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT-HHHHHHHTTHHHHHHTTT
T ss_pred ----hhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcccc-ccchhhhhhhhhhHHHHh
Confidence 2455677788999999999999754 67899999999999988764 555566466665555444
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=3.4e-14 Score=134.83 Aligned_cols=111 Identities=13% Similarity=0.113 Sum_probs=95.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
|..+++.|.++ +++.+..|...|.+++. +-++...+.+.||+|+|+++|+++++++|..|+++|++++..|+.+|..
T Consensus 4 ip~lv~~L~~~--~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 4 IPKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHhCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55677888766 47899999999999874 6678999999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhc
Q 015709 212 VLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIR 245 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~-~~~vr~kAl~ALS~LiR 245 (402)
+.+.|+++.|++++.+. ++.++..|+++|.++..
T Consensus 82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~ 116 (457)
T d1xm9a1 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS 116 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHh
Confidence 99999999999988754 45566666666655543
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.3e-15 Score=140.14 Aligned_cols=169 Identities=14% Similarity=0.029 Sum_probs=145.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHH
Q 015709 185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 263 (402)
Q Consensus 185 s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~-LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L 263 (402)
+.+.+.|..|+.+|..++. +......+.+.||+++|+. +++++++++|..|+++|++++++++..+..+.+.||++.|
T Consensus 28 ~~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 28 AADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 4567889999999999996 5667888999999999986 7888889999999999999999999999999999999999
Q ss_pred HHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHH
Q 015709 264 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEAL 343 (402)
Q Consensus 264 ~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~ 343 (402)
+.++.+. .++.++.+|++++.+|+.. ++.....+.+.|+++.|+.+|.+++.+++.+++.+|.+|+...+..+.
T Consensus 107 v~lL~~~-~~~~v~~~a~~aL~~l~~~-----~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 180 (264)
T d1xqra1 107 LRLLDRD-ACDTVRVKALFAISCLVRE-----QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKG 180 (264)
T ss_dssp HHHHHHC-SCHHHHHHHHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhhcC-CCHHHHHHHHHHHHHHhcc-----chhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHH
Confidence 9999765 3677999999999999953 556677888999999999999999999999999999999877666677
Q ss_pred HHHhcCCcHHHHHHHHH
Q 015709 344 VLKDFCGLDTALERLRQ 360 (402)
Q Consensus 344 ~~~~~~GL~~~L~~L~~ 360 (402)
.+.+.+++...+..|++
T Consensus 181 ~~~~~~~v~~L~~lL~~ 197 (264)
T d1xqra1 181 TLCSMGMVQQLVALVRT 197 (264)
T ss_dssp HHHHTTHHHHHHHHHTS
T ss_pred HHHHhhhHHHHHHHHcC
Confidence 77756666666666543
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=4.1e-06 Score=83.50 Aligned_cols=172 Identities=11% Similarity=0.021 Sum_probs=122.0
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
....|..+++.+..++..... ++..-...+.++.++..+...||..|+++++.++++... + ......+|.+..++
T Consensus 415 ~~~~r~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~--~-~~~~~i~~~l~~~~ 489 (588)
T d1b3ua_ 415 KWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK--E-WAHATIIPKVLAMS 489 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH--H-HHHHHTHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHcCh--HhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCc--H-HHHHHHHHHHHHHh
Confidence 345666666666665543211 111112356677888899999999999999999875322 1 12234789999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 305 (402)
.+.+...|..++++++.+....+. .+....-++.|..+++++ .+.+|..++.++..+... .+ .....
T Consensus 490 ~~~~~~~R~~~~~~l~~l~~~~~~---~~~~~~ilp~ll~~~~D~--v~nVR~~a~~~l~~i~~~----~~----~~~~~ 556 (588)
T d1b3ua_ 490 GDPNYLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPI----LD----NSTLQ 556 (588)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHH---HHHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGG----SC----HHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCh---HHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHH----cC----cHhHH
Confidence 988888899999999998765443 233445788999999886 567899999999998742 11 12233
Q ss_pred CCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 306 RFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 306 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
..+.+.+..+++.+|.||+..|..|+..|+
T Consensus 557 ~~i~~~l~~L~~D~d~dVr~~A~~al~~l~ 586 (588)
T d1b3ua_ 557 SEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 446677777777789999999999998875
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.16 E-value=1.1e-07 Score=75.93 Aligned_cols=109 Identities=9% Similarity=0.051 Sum_probs=88.0
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015709 183 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 262 (402)
Q Consensus 183 L~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~ 262 (402)
|+++++.||..|++.||.+. + .+++.|+.++++++..+|..|+++|+.+. .+ +.++.
T Consensus 1 L~D~~~~VR~~A~~aL~~~~---~---------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~--~~---------~~~~~ 57 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRMG---D---------EAFEPLLESLSNEDWRIRGAAAWIIGNFQ--DE---------RAVEP 57 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSCS---S---------TTHHHHHHGGGCSCHHHHHHHHHHHGGGC--SH---------HHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhC---H---------HHHHHHHHHHcCCCHHHHHHHHHHHHhcc--hh---------hhHHH
Confidence 56788999999999998753 1 35789999999999999999999998652 22 24678
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHH
Q 015709 263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIK 332 (402)
Q Consensus 263 L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~ 332 (402)
|..+|+++ ++.+|..|+++|..+-. .+.++.|..++..+++.++..|+.+|.
T Consensus 58 L~~~l~d~--~~~VR~~a~~aL~~i~~----------------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 58 LIKLLEDD--SGFVRSGAARSLEQIGG----------------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHHHHC--CTHHHHHHHHHHHHHCS----------------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHhhhccc--hhHHHHHHHHHHHHhCc----------------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 89999876 66799999999988731 246788888999999999999998764
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=6.1e-05 Score=74.72 Aligned_cols=173 Identities=9% Similarity=0.027 Sum_probs=128.5
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
....|..|+.-+..+....+... . ...++.+..+++++++.||..|+.+++.+++.-+. .......+|.+..++
T Consensus 139 ~~~~r~~a~~ll~~~~~~~~~~~-~--~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~ 212 (588)
T d1b3ua_ 139 WFTSRTSACGLFSVCYPRVSSAV-K--AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLA 212 (588)
T ss_dssp SHHHHHHHGGGHHHHTTTSCHHH-H--HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhhHHH-H--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHh
Confidence 44567777777777766554322 1 22367778888999999999999999999986432 233446778889999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 305 (402)
++++..+|..|+.+++.+....+.. .....-++.+..++.++ +.++|..++..+..++.. .......
T Consensus 213 ~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~~~~D~--~~~Vr~~~~~~l~~l~~~--------~~~~~~~ 279 (588)
T d1b3ua_ 213 SDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDK--SWRVRYMVADKFTELQKA--------VGPEITK 279 (588)
T ss_dssp TCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCS--SHHHHHHHHHTHHHHHHH--------HCHHHHH
T ss_pred cCCchhhHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHhcccc--cHHHHHHHHHhHHHHHHH--------hhhhhhh
Confidence 9888999999999999988654431 12223578888888775 678999999999998742 1122334
Q ss_pred CCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 306 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
..+++.+..++...+.+++..++.++..++..
T Consensus 280 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~ 311 (588)
T d1b3ua_ 280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999887654
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.95 E-value=4.3e-06 Score=66.29 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=71.7
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH
Q 015709 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (402)
Q Consensus 174 Ggl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~ 253 (402)
.++++|+..|+++++.+|..|+++||.+.. + +++|.|+.+|+++++.+|..|++||+.+ +.+
T Consensus 22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~VR~~a~~aL~~i--~~~----- 83 (111)
T d1te4a_ 22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLEDDSGFVRSGAARSLEQI--GGE----- 83 (111)
T ss_dssp TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHHHCCTHHHHHHHHHHHHH--CSH-----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------hhHHHHHhhhccchhHHHHHHHHHHHHh--Ccc-----
Confidence 468999999999999999999999997742 2 3579999999999999999999999987 222
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015709 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (402)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~ 285 (402)
..++.|..+++++ +..+|..|+.+|.
T Consensus 84 ----~~~~~L~~ll~d~--~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 84 ----RVRAAMEKLAETG--TGFARKVAVNYLE 109 (111)
T ss_dssp ----HHHHHHHHHTTSC--CTHHHHHHHHHGG
T ss_pred ----chHHHHHHHHcCC--CHHHHHHHHHHHH
Confidence 3567788888876 5668888877653
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=5.3e-05 Score=79.59 Aligned_cols=149 Identities=14% Similarity=0.096 Sum_probs=108.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc-HHHHHh
Q 015709 178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QEMFYV 256 (402)
Q Consensus 178 ~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~-~~~f~~ 256 (402)
.+...+.+++..+|..|+.++|.++.+.++.-...+. ..+|.|+..++++++.+|..|+|+||.++....+. .+.+ -
T Consensus 399 ~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~ 476 (888)
T d1qbkb_ 399 LLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-L 476 (888)
T ss_dssp HHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-T
T ss_pred HHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-h
Confidence 3345667899999999999999999765443222222 36788999999989999999999999887543222 2222 2
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 257 ~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
...++.|...+.++ +.+++..|++++.+++... .+...+.+ ..+++.++..+...+.+....++.++.+++.
T Consensus 477 ~~~l~~ll~~l~d~--~~~V~~~a~~al~~l~~~~----~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~ 548 (888)
T d1qbkb_ 477 KPLMTELLKRILDS--NKRVQEAACSAFATLEEEA----CTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLAD 548 (888)
T ss_dssp TTHHHHHHHHHSSS--CHHHHHHHHHHHHHHHHHH----TTSSGGGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHh----hhhhhhHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 45677788777775 6789999999999998642 34445544 2467788888888887888777888877764
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=0.00012 Score=64.74 Aligned_cols=97 Identities=11% Similarity=0.039 Sum_probs=61.3
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH
Q 015709 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (402)
Q Consensus 174 Ggl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~ 253 (402)
.-.+.|+.+|+++++.+|..|+.+|+.... + .+++.|+.+++++++.+|..|+.+|+.+...... ...
T Consensus 19 ~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~~~ 86 (276)
T d1oyza_ 19 LNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-EDN 86 (276)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-HHH
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-ccc
Confidence 345567778888888888888888877642 2 2467788888877777888888888776432211 111
Q ss_pred HHhcCcHHHHHH-hhcCCCccHHHHHHHHHHHHHHhh
Q 015709 254 FYVEAGDLMLQD-ILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 254 f~~~gGi~~L~~-lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
.++.|.. +++++ +..++..|+..+..++.
T Consensus 87 -----~~~~l~~~~l~d~--~~~vr~~a~~aL~~~~~ 116 (276)
T d1oyza_ 87 -----VFNILNNMALNDK--SACVRATAIESTAQRCK 116 (276)
T ss_dssp -----HHHHHHHHHHHCS--CHHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHhcCC--ChhHHHHHHHHHHHHcc
Confidence 1222333 34443 56677777777777664
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=0.00031 Score=65.63 Aligned_cols=197 Identities=14% Similarity=0.101 Sum_probs=124.2
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchh--HHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN--DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL 207 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~--~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~ 207 (402)
..++...+..+.+.+.+.+.+..|+..+..++....... .......++.+..++.+++++++..++++++.+++..+.
T Consensus 170 ~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 249 (458)
T d1ibrb_ 170 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 249 (458)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 456677777888777778889999999998887653221 222223466677788999999999999999999987654
Q ss_pred hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH--------------------------------------------
Q 015709 208 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL-------------------------------------------- 243 (402)
Q Consensus 208 ~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~L-------------------------------------------- 243 (402)
.-...+.....+.+.....++.+.++..|+..++.+
T Consensus 250 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 329 (458)
T d1ibrb_ 250 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 329 (458)
T ss_dssp GCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhh
Confidence 321111112222333334444444544444444433
Q ss_pred -------------------------hcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCC
Q 015709 244 -------------------------IRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV 298 (402)
Q Consensus 244 -------------------------iR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~ 298 (402)
+...+.. +. ..-++.+...++++ +.+.|.-|+.+++.++... ....
T Consensus 330 ~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~-~~l~~~i~~~l~s~--~~~~r~aal~~l~~i~~~~---~~~~ 400 (458)
T d1ibrb_ 330 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGP---EPSQ 400 (458)
T ss_dssp TCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---HH-HHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSS---CTTT
T ss_pred hcchhhhccccccHHHHHHHHHHHHHHhccHh---hh-hHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhc---CHhH
Confidence 2211110 00 01234555666665 6788888999999887421 1111
Q ss_pred cchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 299 EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 299 ~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
..+.+ ..+++.++..++.+++.+|..|+.+|+.++..
T Consensus 401 ~~~~l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~ 437 (458)
T d1ibrb_ 401 LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 437 (458)
T ss_dssp TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 22222 45889999999999999999999999998753
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.74 E-value=0.0011 Score=58.08 Aligned_cols=127 Identities=10% Similarity=0.020 Sum_probs=84.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015709 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (402)
Q Consensus 136 al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~ 215 (402)
+++.|.++ ++..|..|...|..+-. -..++.|+.+|+++++.+|..|+++|+.+...... ...
T Consensus 24 L~~~L~d~--~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~~~---- 86 (276)
T d1oyza_ 24 LFRLLDDH--NSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-EDN---- 86 (276)
T ss_dssp HHHHTTCS--SHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-HHH----
T ss_pred HHHHhcCC--CHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-ccc----
Confidence 44555544 56788888888765421 13578899999999999999999999998764332 222
Q ss_pred CcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015709 216 GALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (402)
Q Consensus 216 g~L~~Ll~-LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L 287 (402)
.++.|+. +++++++.++..|+++|+.+..+.+.... ..++.+...+.++ +..++..|+..+..+
T Consensus 87 -~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~~d~--~~~vr~~a~~~l~~~ 151 (276)
T d1oyza_ 87 -VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDK--STNVRRATAFAISVI 151 (276)
T ss_dssp -HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCS--CHHHHHHHHHHHHTC
T ss_pred -hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHhcCc--chHHHHHHHHHHhhc
Confidence 2334443 45666788999999999988766543222 2345666666665 456777776665543
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.73 E-value=0.00033 Score=70.73 Aligned_cols=202 Identities=9% Similarity=0.031 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhc-------------CCHHHHHHhcCCCCHHHHHHH
Q 015709 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL-------------GGLSVLVGQLNHPDTDIRKIS 194 (402)
Q Consensus 128 ~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~l-------------Ggl~~Li~lL~s~~~~Ir~~A 194 (402)
+.+..+..+++++.+...+.+-|..|.-.|.+.+........-... .--..+++.|.++++.||..+
T Consensus 36 ~~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~ 115 (861)
T d2bpta1 36 NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAA 115 (861)
T ss_dssp CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 4567888899999988878888888888888877655432211110 112456777888999999999
Q ss_pred HHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHh--cCcHHHHHHhhcCC
Q 015709 195 AWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYV--EAGDLMLQDILGNS 270 (402)
Q Consensus 195 a~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~~f~~--~gGi~~L~~lL~s~ 270 (402)
+.+++.++... |.. .+ -..++.|++.+.+++ ..++..|+.+++.++....+..+.+.. ..-+..+...+.+.
T Consensus 116 a~~i~~i~~~~~p~~-~w---peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~ 191 (861)
T d2bpta1 116 AQLIAAIADIELPHG-AW---PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQST 191 (861)
T ss_dssp HHHHHHHHHHHGGGT-CC---HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCcC-ch---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999998531 100 00 025788888888765 567888999999998765443222211 11223333334444
Q ss_pred CccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 271 SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 271 ~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
..+..++..|+.++.+++..- ............+++.+...+..++.+++..++.++..++..
T Consensus 192 ~~~~~v~~~a~~~l~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~ 254 (861)
T d2bpta1 192 ETSKAVRLAALNALADSLIFI----KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK 254 (861)
T ss_dssp CCCHHHHHHHHHHHHHHGGGC----HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHH----hHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 346788999999999887531 111111112234677788889999999999999999988753
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.0017 Score=69.23 Aligned_cols=192 Identities=11% Similarity=0.091 Sum_probs=128.2
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC--chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPID--NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD--nA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
|-.+++.+.++ ++|-|.-|+.+|...+.+.. .-++.. ...++.|+.+|+.++++||..|+.|++.++...+..+.
T Consensus 5 ~~~ll~k~~~~--D~d~R~ma~~dl~~~l~~~~~~~~~~~~-~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~ 81 (1207)
T d1u6gc_ 5 ISNLLEKMTSS--DKDFRFMATNDLMTELQKDSIKLDDDSE-RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV 81 (1207)
T ss_dssp HHHHHHHTTCS--SHHHHHHHHHHHHHHTSSSCCSCCTTHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHhcCCC--CHhHHHHHHHHHHHHHhhcccccChHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH
Confidence 34455555554 57788888888887654211 111111 12578899999999999999999999999976554332
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc-----HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015709 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-----QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~-----~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~ 285 (402)
...++.|+..+.+++...+..+..+|..++...+.. ....+-...++.|...+... .+..++..|+..+.
T Consensus 82 ----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~v~~~al~~l~ 156 (1207)
T d1u6gc_ 82 ----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSVQLEALDIMA 156 (1207)
T ss_dssp ----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHH
Confidence 235788888887777777777777777776654321 11112223344555555554 36778999999999
Q ss_pred HHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 286 DLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 286 ~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
.++... .+...+.. ..+++.++..|.+++..+|..|+.+|..++...
T Consensus 157 ~l~~~~----g~~l~~~~--~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~ 203 (1207)
T d1u6gc_ 157 DMLSRQ----GGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC 203 (1207)
T ss_dssp HHHHHT----CSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHh----hHhhHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC
Confidence 988641 22222222 246778888899999999999999999998764
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=0.0014 Score=68.43 Aligned_cols=183 Identities=14% Similarity=0.130 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHccCCCCc-hhHHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 148 EDSQRALQELLILVEPIDN-ANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDn-A~~l~-~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
+-...+++.+..+++.+.. -..+. ....++.++.++++.++++|..|..++|.++...+..=...+. ..++.|+.-+
T Consensus 637 ~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~~~L 715 (888)
T d1qbkb_ 637 DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNL 715 (888)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHh
Confidence 3445566666666553322 12222 2345667778899999999999999999998765432111111 3577888888
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 305 (402)
+++..+++..|+|+++-++.+.+....-++ ..-++.|+.++++++.+..++.+++.+|+.|+.. .|+...-..
T Consensus 716 ~~~~~~v~~~a~~~ig~ia~~~~~~~~py~-~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~-----~p~~~~~~l- 788 (888)
T d1qbkb_ 716 NPEFISVCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV-----CPQEVAPML- 788 (888)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHTGGGGGGGS-HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH-----CHHHHGGGG-
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH-----CHHHHHhhH-
Confidence 887788999999999999887665443332 3578899999998766677899999999999853 333221112
Q ss_pred CCcHHHHHHhhcC-CChHHHHHHHHHHHHHhcCC
Q 015709 306 RFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 306 ~g~v~~Lv~lL~~-~d~dv~E~aL~aL~~L~~~~ 338 (402)
..+++.++..|.. .|..-++.+...++.+....
T Consensus 789 ~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~ 822 (888)
T d1qbkb_ 789 QQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVN 822 (888)
T ss_dssp GGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHC
Confidence 2356666666655 46677889999999988653
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=0.0022 Score=59.59 Aligned_cols=202 Identities=9% Similarity=-0.032 Sum_probs=128.8
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHH------------HhcCCHHHHHHhcCCCCHHHHHHHH
Q 015709 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDL------------SKLGGLSVLVGQLNHPDTDIRKISA 195 (402)
Q Consensus 128 ~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l------------~~lGgl~~Li~lL~s~~~~Ir~~Aa 195 (402)
+.++.+-.++.++.+...+..-|..|.--|...+...+....- .+......++..+.++++.++ .++
T Consensus 31 ~~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~-~~~ 109 (458)
T d1ibrb_ 31 NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPS-SAS 109 (458)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSC-SHH
T ss_pred CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCcHHHH-HHH
Confidence 4467788888999887777778888877777777654322110 112234456777777765544 566
Q ss_pred HHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCcc
Q 015709 196 WILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFE 273 (402)
Q Consensus 196 ~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~--~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d 273 (402)
.+++.++......+. -.+.++.|+..+.++. ...+..++++++.++.........-....-++.+...+.++..+
T Consensus 110 ~~~~~i~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~ 186 (458)
T d1ibrb_ 110 QCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPS 186 (458)
T ss_dssp HHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHhCCccc---CcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccC
Confidence 777776643111100 1257889999887644 56677888888887755433221111223456777778765456
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 274 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 274 ~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
..++..|+..+..+.... ............+.+.+..++..++++++..++.++..++..
T Consensus 187 ~~v~~~a~~~l~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~ 246 (458)
T d1ibrb_ 187 NNVKLAATNALLNSLEFT----KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL 246 (458)
T ss_dssp HHHHHHHHHHHHHHTTTT----HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh----hhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 778999999999887421 111111222334677788888999999999999999998764
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.00095 Score=71.26 Aligned_cols=144 Identities=17% Similarity=0.159 Sum_probs=106.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~ 255 (402)
|+.|+..+.+++..+|..++.|+|.++.-+|. ..+|.|...++++++.+|..++.++..++.+.+.....++
T Consensus 930 ~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~--------~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l 1001 (1207)
T d1u6gc_ 930 WALLLKHCECAEEGTRNVVAECLGKLTLIDPE--------TLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLL 1001 (1207)
T ss_dssp HHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG--------GTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHH
Confidence 55566667778899999999999999987774 4689999999999999999999999999988766555544
Q ss_pred hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCc-chhHHhCCcHHHHHHhhcC----------------
Q 015709 256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-PPLFRDRFFLKSVVDLTAS---------------- 318 (402)
Q Consensus 256 ~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~-~~~l~~~g~v~~Lv~lL~~---------------- 318 (402)
. .-++.+...|+++ +..+|+.|+.++..++.+ .|.. .+.+ ..+++.|.+...-
T Consensus 1002 ~-~li~~ll~~l~d~--~~~vR~~al~~l~~~~~~-----~p~li~~~l--~~llp~l~~~t~~~~e~ir~v~~gp~kh~ 1071 (1207)
T d1u6gc_ 1002 K-NCIGDFLKTLEDP--DLNVRRVALVTFNSAAHN-----KPSLIRDLL--DTVLPHLYNETKVRKELIREVEMGPFKHT 1071 (1207)
T ss_dssp H-HHSTTTHHHHSSS--STHHHHHHHHHHHHHHHH-----CGGGTGGGH--HHHHHHHHHTTSCCGGGEEEEEETTEEEE
T ss_pred H-HHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHh-----ChHHHHHHH--HHHHHHHHHHhccchhheeeeecCCceee
Confidence 2 2334455677876 677999999999999864 2332 3333 1355555553321
Q ss_pred --CChHHHHHHHHHHHHHhcC
Q 015709 319 --ADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 319 --~d~dv~E~aL~aL~~L~~~ 337 (402)
+-.++|..|..++.+|+..
T Consensus 1072 ~d~gl~~rk~a~e~~~~~l~~ 1092 (1207)
T d1u6gc_ 1072 VDDGLDIRKAAFECMYTLLDS 1092 (1207)
T ss_dssp EETHHHHHHHHHHHHHHHHHS
T ss_pred cCCcHHHHHHHHHHHHHHHHH
Confidence 2356899999999998854
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=0.0035 Score=63.31 Aligned_cols=202 Identities=9% Similarity=-0.015 Sum_probs=130.7
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHH------------HhcCCHHHHHHhcCCCCHHHHHHHH
Q 015709 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDL------------SKLGGLSVLVGQLNHPDTDIRKISA 195 (402)
Q Consensus 128 ~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l------------~~lGgl~~Li~lL~s~~~~Ir~~Aa 195 (402)
+.+..+..+++++.+.+.+.+-|..|.--|.+.+...+....- .+..--..+++.|.+++. ++..++
T Consensus 32 ~~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a 110 (876)
T d1qgra_ 32 NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETY-RPSSAS 110 (876)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHH
T ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHH
Confidence 3467788889999988888888888888887777543221100 011123467778877664 566789
Q ss_pred HHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCc
Q 015709 196 WILGKASQNN-PLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF 272 (402)
Q Consensus 196 ~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s~~--~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~ 272 (402)
.+++.+++.. |. ..+ -+.+|.|++.+.+++ ..++..++.+++.++....+..-.-.-...++.++..+.++..
T Consensus 111 ~~i~~i~~~~~p~-~~W---peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~ 186 (876)
T d1qgra_ 111 QCVAGIACAEIPV-NQW---PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186 (876)
T ss_dssp HHHHHHHHHHGGG-TCC---TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCS
T ss_pred HHHHHHHHHHCCc-ccc---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCc
Confidence 9999998531 10 000 257899999887654 5678889999999886543211111112356777888876545
Q ss_pred cHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 273 EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 273 d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
+..++..|+..+.++.... .+.........-+++.+...+..++.+++..++.++..+....
T Consensus 187 ~~~v~~~a~~~l~~~~~~~----~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~ 248 (876)
T d1qgra_ 187 SNNVKLAATNALLNSLEFT----KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248 (876)
T ss_dssp CHHHHHHHHHHHHHHGGGC----HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 6778888888888776421 1100011112235677788888899999999999999887643
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.43 E-value=0.022 Score=56.84 Aligned_cols=156 Identities=10% Similarity=0.045 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhc---CCHHHHHHhc--CCCCHHHHHHHHHHHHHHhcC
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL---GGLSVLVGQL--NHPDTDIRKISAWILGKASQN 204 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~l---Ggl~~Li~lL--~s~~~~Ir~~Aa~vLg~~aqN 204 (402)
+++|..+++.+.+.+ +...+..|+..|..+++..+......-. .-+..++..+ ..++..+|..|..+++++...
T Consensus 133 peli~~L~~~~~s~~-~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~ 211 (861)
T d2bpta1 133 PELMKIMVDNTGAEQ-PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIF 211 (861)
T ss_dssp HHHHHHHHHHTSTTS-CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 456666666665543 4567888999999988877654321111 1234444444 346789999999999999887
Q ss_pred ChHhHHHH-HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015709 205 NPLVQKQV-LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 283 (402)
Q Consensus 205 Np~~Q~~~-le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~l 283 (402)
-+...... .....++.|...++++++.++..++.++..++..++.....+...-....+....++. +..++..+..+
T Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~--~~~v~~~~~~~ 289 (861)
T d2bpta1 212 IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP--NDKVASMTVEF 289 (861)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS--SHHHHHHHHHH
T ss_pred HhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHH
Confidence 55433211 1123567788888888899999999999999887766544443333333444444544 56678777777
Q ss_pred HHHHh
Q 015709 284 VGDLA 288 (402)
Q Consensus 284 L~~L~ 288 (402)
+..++
T Consensus 290 l~~l~ 294 (861)
T d2bpta1 290 WSTIC 294 (861)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.82 E-value=0.1 Score=51.11 Aligned_cols=198 Identities=12% Similarity=0.078 Sum_probs=124.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH---HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHH
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK---QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~---~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~ 252 (402)
++++..+|++++.-+...++.+++.+++..+.... ...+ ....+-.+..+++.....-++-.++.+.|. ++.+.
T Consensus 124 ~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~--~~~~l~~l~~~~~~~~~~i~v~~lq~llr~-~~~R~ 200 (477)
T d1ho8a_ 124 EQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLK--NNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRD 200 (477)
T ss_dssp HHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHH--CHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred hHHHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHH--hhHHHHHhhcccccchHHHHHHHHHHHhcC-ccHHH
Confidence 56777888888888889999999999887544333 2222 123333444566677777788889999986 56677
Q ss_pred HHHhcC--cHHHHHHhhcC----C-----------CccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCC--cHHHHH
Q 015709 253 MFYVEA--GDLMLQDILGN----S-----------SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF--FLKSVV 313 (402)
Q Consensus 253 ~f~~~g--Gi~~L~~lL~s----~-----------~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g--~v~~Lv 313 (402)
.|.... .+..|+.+|.. . +..+.++-.+++++.-|.. ++.....+.+.+ .++.++
T Consensus 201 ~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF------~~~~~~~l~~~~~~~i~~l~ 274 (477)
T d1ho8a_ 201 VIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF------NPVFANELVQKYLSDFLDLL 274 (477)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT------SHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHc------CHHHHHHHHHhhhHHHHHHH
Confidence 775432 34445554431 1 1245678888888887764 345566666653 488888
Q ss_pred HhhcC-CChHHHHHHHHHHHHHhcCChh-----hHHHHHhcCCcHHHHHHHHHHhHHhhhhhhHhhhHHHHHHHHHHHHH
Q 015709 314 DLTAS-ADLDLQEKALAAIKNLLQLRTT-----EALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVEL 387 (402)
Q Consensus 314 ~lL~~-~d~dv~E~aL~aL~~L~~~~~~-----~~~~~~~~~GL~~~L~~L~~~~~~l~~~e~~~~y~~~l~~~~~e~~~ 387 (402)
++++. .-..+...++.++.+++..... +...+- .|++.+.++.|+.+- ..++ |-.+||+.|.+..+.
T Consensus 275 ~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v-~~~~l~~l~~L~~r~---~~De---dl~edl~~L~~~L~~ 347 (477)
T d1ho8a_ 275 KLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLL-LGNALPTVQSLSERK---YSDE---ELRQDISNLKEILEN 347 (477)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHH-HHCHHHHHHHHHSSC---CSSH---HHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH-HcchhHHHHHHhcCC---CCCH---HHHHHHHHHHHHHHH
Confidence 88864 4778888889999999875321 122222 466666666653221 1233 345567666666665
Q ss_pred HH
Q 015709 388 IF 389 (402)
Q Consensus 388 ~~ 389 (402)
.+
T Consensus 348 ~~ 349 (477)
T d1ho8a_ 348 EY 349 (477)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.79 E-value=0.049 Score=54.53 Aligned_cols=158 Identities=10% Similarity=0.079 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHh-cCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCCh
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK-LGGLSVLVGQLNH--PDTDIRKISAWILGKASQNNP 206 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~-lGgl~~Li~lL~s--~~~~Ir~~Aa~vLg~~aqNNp 206 (402)
++++..+++.+.+++.+...+..++..|..+++.++....... -..++.++..+.+ ++.++|..|..++.+.....+
T Consensus 127 peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~ 206 (876)
T d1qgra_ 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhh
Confidence 3678888888888877777888999999998876654322112 2347778888754 467899999999999887654
Q ss_pred HhHHHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015709 207 LVQKQVLE-LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (402)
Q Consensus 207 ~~Q~~~le-~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~ 285 (402)
........ .-.++.+...+.++++.++..++.++..++..++.....+........+...+.+. ...++..+...+.
T Consensus 207 ~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~ 284 (876)
T d1qgra_ 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEVALQGIEFWS 284 (876)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHH
Confidence 33221111 12456677788888889999999999999998877666666556667777777765 4556777776666
Q ss_pred HHhh
Q 015709 286 DLAK 289 (402)
Q Consensus 286 ~L~~ 289 (402)
.++.
T Consensus 285 ~i~~ 288 (876)
T d1qgra_ 285 NVCD 288 (876)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=95.35 E-value=0.0018 Score=58.43 Aligned_cols=105 Identities=14% Similarity=0.136 Sum_probs=53.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH-----Hhc-CChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHH-----HHh
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGK-----ASQ-NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVS-----SLI 244 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~-----~aq-NNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS-----~Li 244 (402)
+..|+.+++.+++.||..|+..|+. +.+ .++.++..+...=..+.|..++.+++..||..+..+++ -++
T Consensus 68 ~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~ 147 (233)
T d1lrva_ 68 VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFM 147 (233)
T ss_dssp GGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHHh
Confidence 3455666666777777666654431 111 23444444444333456666666666666666554321 122
Q ss_pred cC-ChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015709 245 RN-NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 245 R~-~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
++ ++.........-|.+.|..+++++ +..+|..++.
T Consensus 148 ~D~d~~VR~~aA~~~~~~~L~~l~~D~--d~~VR~~aa~ 184 (233)
T d1lrva_ 148 RDEDRQVRKLVAKRLPEESLGLMTQDP--EPEVRRIVAS 184 (233)
T ss_dssp TCSCHHHHHHHHHHSCGGGGGGSTTCS--SHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhcCHHHHHHHccCC--CHHHHHHHHH
Confidence 22 122222333334555666666654 4556666554
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.20 E-value=0.44 Score=44.15 Aligned_cols=133 Identities=15% Similarity=0.111 Sum_probs=96.8
Q ss_pred hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC---cHHHHHHhhcCCCccHHHHHHHHH
Q 015709 206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA---GDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 206 p~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g---Gi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
+..-..++....+..+.+.+..++=++...|...+-.+...|+.....|+..+ =+.....+|.++ +.=.|+.++-
T Consensus 145 e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~--NYVtrRqSlK 222 (330)
T d1upka_ 145 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE--NYVTKRQSLK 222 (330)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS--SHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCC--chHHHHHHHH
Confidence 34455566666677777777777777888888888887777787777777655 334456788886 4568999999
Q ss_pred HHHHHhhcccccCCCCc-chhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHH
Q 015709 283 LVGDLAKCQLENMHKVE-PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEAL 343 (402)
Q Consensus 283 lL~~L~~~~l~~~~~~~-~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~ 343 (402)
+|+.|.... .+... ...+.+..-++.++.+|++....+|-.|-....-++..+...+.
T Consensus 223 LLgelLldr---~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~ 281 (330)
T d1upka_ 223 LLGELLLDR---HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQP 281 (330)
T ss_dssp HHHHHHHSG---GGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHH
T ss_pred HHHHHHhhh---hHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHH
Confidence 999998531 12222 22344567788999999999999999999999988888754433
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.16 E-value=0.37 Score=44.91 Aligned_cols=159 Identities=14% Similarity=0.071 Sum_probs=110.7
Q ss_pred CCCCchhHHHhcCCHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH
Q 015709 162 EPIDNANDLSKLGGLSVLVGQLNH-----------PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV 230 (402)
Q Consensus 162 e~iDnA~~l~~lGgl~~Li~lL~s-----------~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~ 230 (402)
++++.-..| ..+|+..|+.+|.. .++.++.....||..+..+.+..+..+-..+++..|...+.++..
T Consensus 34 ~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~ 112 (343)
T d2bnxa1 34 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP 112 (343)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSH
T ss_pred CCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCch
Confidence 567788888 56899888887731 125688889999999986555555555566889999999999888
Q ss_pred HHHHHHHHHHHHHhcC------ChhcHHHH------HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCC
Q 015709 231 EEAVKALYTVSSLIRN------NLAGQEMF------YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV 298 (402)
Q Consensus 231 ~vr~kAl~ALS~LiR~------~~~~~~~f------~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~ 298 (402)
.++.-|+--|+.++-- ++...++| .+.+=+..++..|++.. +..++..++.+|..|+.+ .++
T Consensus 113 ~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~-~~ey~~a~m~lIN~li~~-----~~d 186 (343)
T d2bnxa1 113 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT-SIALKVGCLQLINALITP-----AEE 186 (343)
T ss_dssp HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTS-CHHHHHHHHHHHHHHHTT-----CSC
T ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccc-cHHHHHHHHHHHHHHHcC-----ccc
Confidence 8888888877776632 22222222 23356788888888763 566888999999999853 222
Q ss_pred ------cchhHHhCCcHHHHHHhhcCCChHHHHHH
Q 015709 299 ------EPPLFRDRFFLKSVVDLTASADLDLQEKA 327 (402)
Q Consensus 299 ------~~~~l~~~g~v~~Lv~lL~~~d~dv~E~a 327 (402)
.+..|...|+.+.+-.+=..+++++..+.
T Consensus 187 l~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Qi 221 (343)
T d2bnxa1 187 LDFRVHIRSELMRLGLHQVLQELREIENEDMKVQL 221 (343)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCChHHHHHHHHccCChHHHHHH
Confidence 35567788988877766555555554443
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=95.02 E-value=1.1 Score=41.34 Aligned_cols=79 Identities=15% Similarity=0.108 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC----CCHH
Q 015709 114 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTD 189 (402)
Q Consensus 114 ~~~L~ea~~~l~~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s----~~~~ 189 (402)
|+|+-+++-..|.+.- ++-..+.+.+...+..+....+..+....+... ..+..+..++++ .++.
T Consensus 74 r~~~lDal~~~GT~~a---~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~Pt~--------~~l~~~~~l~~~~~~~~~~~ 142 (336)
T d1lsha1 74 RRWILDAVPAMATSEA---LLFLKRTLASEQLTSAEATQIVASTLSNQQATR--------ESLSYARELLNTSFIRNRPI 142 (336)
T ss_dssp HHHHHHHHHHHCSHHH---HHHHHHHHHTTCSCHHHHHHHHHHHHHTCCCCH--------HHHHHHHHHHTCHHHHTCHH
T ss_pred HHHHHHHHHHhCCHHH---HHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCH--------HHHHHHHHHHcCcccccchh
Confidence 3455555555454322 344444555677777766666777765544321 123334455554 4677
Q ss_pred HHHHHHHHHHHHhc
Q 015709 190 IRKISAWILGKASQ 203 (402)
Q Consensus 190 Ir~~Aa~vLg~~aq 203 (402)
++..+.-.+|+++.
T Consensus 143 l~~~a~La~gslv~ 156 (336)
T d1lsha1 143 LRKTAVLGYGSLVF 156 (336)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877764
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.57 E-value=1 Score=41.71 Aligned_cols=153 Identities=20% Similarity=0.207 Sum_probs=102.9
Q ss_pred hcCChH--hHHHHHHcCcHHHHHHhhcC--------CC---HHHHHHHHHHHHHHhcCChhcHHHHHh-cCcHHHHHHhh
Q 015709 202 SQNNPL--VQKQVLELGALSKLMKMVKS--------SF---VEEAVKALYTVSSLIRNNLAGQEMFYV-EAGDLMLQDIL 267 (402)
Q Consensus 202 aqNNp~--~Q~~~le~g~L~~Ll~LL~s--------~~---~~vr~kAl~ALS~LiR~~~~~~~~f~~-~gGi~~L~~lL 267 (402)
-.++|- +|+ | ..+|+..|+.+|.. .. ......++.+|-++.. +..+.+.++. .+++..|..+|
T Consensus 31 Lrt~~~sWv~~-F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L 107 (343)
T d2bnxa1 31 LNNNPVSWVQT-F-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAM 107 (343)
T ss_dssp HHHSCHHHHHH-H-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTC
T ss_pred HhcCCchHHHH-H-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc-cHHHHHHHHcChHHHHHHHHcc
Confidence 344553 333 3 56678888877641 11 2345567888887765 5666666655 67999999999
Q ss_pred cCCCccHHHHHHHHHHHHHHhhcccccCCCC----cc------hhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHhc
Q 015709 268 GNSSFEIRLHRKAVSLVGDLAKCQLENMHKV----EP------PLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 268 ~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~----~~------~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~ 336 (402)
.++ .++++.-|.-+|+.+|... .++. .. ...-+.+-...+++.|... +.+++-.++..+-.+..
T Consensus 108 ~s~--~~~tr~~a~elL~~lc~~~---~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~ 182 (343)
T d2bnxa1 108 DPA--VPNMMIDAAKLLSALCILP---QPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT 182 (343)
T ss_dssp CTT--SHHHHHHHHHHHHHHHTCC---SSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHT
T ss_pred CCC--chHHHHHHHHHHHHHHhcc---CCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHc
Confidence 886 6788999999999998531 1111 11 1223445567788878765 78999999999988888
Q ss_pred CChh------hHHHHHhcCCcHHHHHHHHHHhH
Q 015709 337 LRTT------EALVLKDFCGLDTALERLRQQLQ 363 (402)
Q Consensus 337 ~~~~------~~~~~~~~~GL~~~L~~L~~~~~ 363 (402)
..++ .|..|. .+|+.+.+++|+....
T Consensus 183 ~~~dl~~R~~lR~E~~-~~Gl~~il~~l~~~~~ 214 (343)
T d2bnxa1 183 PAEELDFRVHIRSELM-RLGLHQVLQELREIEN 214 (343)
T ss_dssp TCSCHHHHHHHHHHHH-HTTHHHHHHHHTTCCC
T ss_pred CcccHHHHHHHHHHHH-HCChHHHHHHHHccCC
Confidence 7653 233555 7899999999876433
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.53 E-value=0.024 Score=55.74 Aligned_cols=82 Identities=15% Similarity=0.143 Sum_probs=68.9
Q ss_pred chhHHHhcC--CHHHHHHhcC----------CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHH
Q 015709 166 NANDLSKLG--GLSVLVGQLN----------HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA 233 (402)
Q Consensus 166 nA~~l~~lG--gl~~Li~lL~----------s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr 233 (402)
|+..|.+-+ .+..|+.+|+ +.++.+.+-||.=||..++..|.-+..+-+.|+=..+++++.+++++||
T Consensus 382 N~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr 461 (477)
T d1ho8a_ 382 NIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVK 461 (477)
T ss_dssp HSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHH
T ss_pred HHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHH
Confidence 444443332 4677888885 4578899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 015709 234 VKALYTVSSLIRNN 247 (402)
Q Consensus 234 ~kAl~ALS~LiR~~ 247 (402)
..|+.|+.-+..++
T Consensus 462 ~eAL~avQklm~~n 475 (477)
T d1ho8a_ 462 YEALKATQAIIGYT 475 (477)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987764
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.81 E-value=0.32 Score=39.85 Aligned_cols=73 Identities=15% Similarity=0.079 Sum_probs=60.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCCh
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNNL 248 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s------~~~~vr~kAl~ALS~LiR~~~ 248 (402)
+..|..=|.+.++.++..|..+|-.+++|. +..+..+...+.+..|+++++. .+..|+.|++..|-.-..++|
T Consensus 47 ~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~fp 126 (145)
T d1ujka_ 47 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP 126 (145)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence 344555678899999999999999999995 9999999999999999999973 346789999888877666554
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=92.61 E-value=0.018 Score=51.50 Aligned_cols=127 Identities=12% Similarity=0.076 Sum_probs=66.3
Q ss_pred HhcCCCCHHHHHHHHHH------HHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 181 GQLNHPDTDIRKISAWI------LGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 181 ~lL~s~~~~Ir~~Aa~v------Lg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
.+|.+++.++|..|++- +.-+.-.+|.++..+.+.=+.+.|..++.+++..||..+..+++
T Consensus 49 ~~l~~p~~e~Ra~Aa~~a~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~------------- 115 (233)
T d1lrva_ 49 QYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLP------------- 115 (233)
T ss_dssp GGTTCSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSC-------------
T ss_pred HHhcCCcHHHHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccC-------------
Confidence 47899999999888762 12222235556665554433344556666655666655544331
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhccc----ccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHH
Q 015709 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL----ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA 330 (402)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l----~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~a 330 (402)
.+.|..++.++ +..+|..++.. +....+ .+.++..+..+...-..+.+..+++.+++.++..++..
T Consensus 116 -----~~~L~~Ll~D~--d~~VR~~aa~~---~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~ 185 (233)
T d1lrva_ 116 -----LEQLEQMAADR--DYLVRAYVVQR---IPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR 185 (233)
T ss_dssp -----TGGGGGGTTCS--SHHHHHHHHHH---SCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred -----HHHHHHHhcCC--CHHHHHHHHhc---cchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHh
Confidence 23455555554 45555555432 111100 11222333333333334455666667777787777754
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.38 E-value=0.19 Score=41.10 Aligned_cols=73 Identities=11% Similarity=0.056 Sum_probs=60.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCCh
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNNL 248 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s------~~~~vr~kAl~ALS~LiR~~~ 248 (402)
+..|..=|+++++.++..|..++-.+++|. +..+..+.....+..|+++++. .+..|+.|++..|-+....++
T Consensus 40 ~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f~ 119 (143)
T d1mhqa_ 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFP 119 (143)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 334555678899999999999999999996 8899999988999999999974 346789888888877665554
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.22 E-value=0.32 Score=39.69 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=57.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCC
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNN 247 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s~-~~~vr~kAl~ALS~LiR~~ 247 (402)
+..|..-|+++++.++..|..+|-.+++|. +..+..+...+.+..|.+++++. +..|+.+++..|-+-...+
T Consensus 44 ~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 117 (145)
T d1dvpa1 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF 117 (145)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 344556678899999999999999999996 66788888888899999998765 4678888887777655544
|
| >d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.09 E-value=0.4 Score=39.50 Aligned_cols=74 Identities=15% Similarity=0.106 Sum_probs=60.0
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCC------CHHHHHHHHHHHHHHhcCC
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSS------FVEEAVKALYTVSSLIRNN 247 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s~------~~~vr~kAl~ALS~LiR~~ 247 (402)
++..|..=|++.++.++.+|..+|-.+++|. +..+..|.....+..|+++++.. +..|+.|.+.-|-+-...+
T Consensus 40 a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f 119 (151)
T d1juqa_ 40 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 119 (151)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHc
Confidence 3445556678899999999999999999996 77888888888999999999752 4678889888888776655
Q ss_pred h
Q 015709 248 L 248 (402)
Q Consensus 248 ~ 248 (402)
|
T Consensus 120 ~ 120 (151)
T d1juqa_ 120 P 120 (151)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.29 E-value=0.93 Score=45.81 Aligned_cols=136 Identities=11% Similarity=0.106 Sum_probs=96.5
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCC-----
Q 015709 176 LSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNN----- 247 (402)
Q Consensus 176 l~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~--~~vr~kAl~ALS~LiR~~----- 247 (402)
++.|.++| .+.+|+.|..|-.-|-.+. ++| |.+..|++++.+++ ..+|.-|+-.+-+.++.+
T Consensus 4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~-~~p---------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~ 73 (959)
T d1wa5c_ 4 LETVAKFLAESVIASTAKTSERNLRQLE-TQD---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN 73 (959)
T ss_dssp HHHHHHHHHHTTSGGGHHHHHHHHHHHH-TST---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHH-cCC---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 45667776 5678889999999888764 556 67888899887765 568888888888877642
Q ss_pred -----hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChH
Q 015709 248 -----LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLD 322 (402)
Q Consensus 248 -----~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~d 322 (402)
++..+..++. .|..+|.++ +..+|...+.+++.++... -|+.. .++++.+++.+.++|+.
T Consensus 74 ~~~~i~~e~k~~Ik~----~ll~~l~~~--~~~ir~~l~~~i~~I~~~d----~p~~W-----p~ll~~l~~~l~s~~~~ 138 (959)
T d1wa5c_ 74 GNHLLPANNVELIKK----EIVPLMISL--PNNLQVQIGEAISSIADSD----FPDRW-----PTLLSDLASRLSNDDMV 138 (959)
T ss_dssp SCBSSCHHHHHHHHH----HHHHHHHHS--CHHHHHHHHHHHHHHHHHH----STTTC-----TTHHHHHHTTCCSSCTT
T ss_pred ccCCCCHHHHHHHHH----HHHHHHhCC--cHHHHHHHHHHHHHHHHHh----Ccccc-----HHHHHHHHHHhCCCCHH
Confidence 1222333333 344444443 5678889999999988631 23332 35788899999999999
Q ss_pred HHHHHHHHHHHHhc
Q 015709 323 LQEKALAAIKNLLQ 336 (402)
Q Consensus 323 v~E~aL~aL~~L~~ 336 (402)
.+..++.++..++.
T Consensus 139 ~~~~~L~~l~~i~k 152 (959)
T d1wa5c_ 139 TNKGVLTVAHSIFK 152 (959)
T ss_dssp HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998875
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.46 E-value=0.47 Score=38.66 Aligned_cols=108 Identities=8% Similarity=0.078 Sum_probs=75.1
Q ss_pred HHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCC
Q 015709 218 LSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 296 (402)
Q Consensus 218 L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~ 296 (402)
|..++.-..++. .+.--.++..|+-+++..+.+.. .++..|..=++++ ++..+..|+.++-.++.+ .+
T Consensus 2 le~liekAT~~~~~~~dw~~il~icD~I~~~~~~~k-----~a~ral~krl~~~--n~~~~l~aL~LLe~~vkN----cG 70 (143)
T d1mhqa_ 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPT-----HAPWLLAHKIQSP--QEKEALYALTVLEMCMNH----CG 70 (143)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----SC
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHH----cC
Confidence 344554444433 22234566677777776554322 2445566777776 678899999999988863 45
Q ss_pred CCcchhHHhCCcHHHHHHhhcC------CChHHHHHHHHHHHHHhc
Q 015709 297 KVEPPLFRDRFFLKSVVDLTAS------ADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 297 ~~~~~~l~~~g~v~~Lv~lL~~------~d~dv~E~aL~aL~~L~~ 336 (402)
+.+...+.+..++..|+.++.. .+..++++++..+...+.
T Consensus 71 ~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~ 116 (143)
T d1mhqa_ 71 EKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (143)
T ss_dssp HHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 6777778888999999999863 478899999998887754
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.80 E-value=0.93 Score=36.87 Aligned_cols=108 Identities=10% Similarity=0.131 Sum_probs=77.8
Q ss_pred cHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccC
Q 015709 217 ALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (402)
Q Consensus 217 ~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~ 295 (402)
.+..++.-..++. .+.--.++-.|+-+++..+..... ++..|..=|+++ ++.++..|+.++-.++. +.
T Consensus 8 ~~e~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~-----a~r~l~krl~~~--~~~~~l~aL~LLe~~vk----NC 76 (145)
T d1ujka_ 8 TLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPL-----ATRLLAHKIQSP--QEWEAIQALTVLETCMK----SC 76 (145)
T ss_dssp SHHHHHHHHTCTTCSSCCHHHHHHHHHHHTSSTTHHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHT----SC
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HH
Confidence 4555565555543 222346777888888876654332 455677778775 67889999999988875 35
Q ss_pred CCCcchhHHhCCcHHHHHHhhcC------CChHHHHHHHHHHHHHh
Q 015709 296 HKVEPPLFRDRFFLKSVVDLTAS------ADLDLQEKALAAIKNLL 335 (402)
Q Consensus 296 ~~~~~~~l~~~g~v~~Lv~lL~~------~d~dv~E~aL~aL~~L~ 335 (402)
++.+...+.+.+++..|+.++.. .+..++++++..+..-+
T Consensus 77 G~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~ 122 (145)
T d1ujka_ 77 GKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 122 (145)
T ss_dssp CHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHH
Confidence 66777888889999999999863 47789999998887764
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=85.76 E-value=0.71 Score=37.47 Aligned_cols=108 Identities=7% Similarity=0.038 Sum_probs=74.5
Q ss_pred HHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCC
Q 015709 218 LSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 296 (402)
Q Consensus 218 L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~ 296 (402)
+..+|.-..++. .+.--.++-.|+-+++..+.+.. .++..|..-|+++ ++.++..|+.++-.++.+ .+
T Consensus 6 ~~~~iekAT~~~~~~~dw~~il~icD~I~~~~~~~k-----~a~ral~krl~~~--n~~v~l~aL~LLd~~vkN----cG 74 (145)
T d1dvpa1 6 FCKNLENATSHLRLEPDWPSILLICDEINQKDVTPK-----NAFAAIKKKMNSP--NPHSSCYSLLVLESIVKN----CG 74 (145)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----SH
T ss_pred HHHHHHHHcCcCCCCCCHHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHc----cc
Confidence 344444444432 22234567778888887665433 2456677778876 678999999999988763 34
Q ss_pred CCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHhc
Q 015709 297 KVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 297 ~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~ 336 (402)
+.+...+.+.+++..+..++.+. +..++++++..+.....
T Consensus 75 ~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (145)
T d1dvpa1 75 APVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (145)
T ss_dssp HHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 45566666778888888888654 78899999988887653
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.52 E-value=14 Score=33.70 Aligned_cols=165 Identities=12% Similarity=0.069 Sum_probs=113.4
Q ss_pred HHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC---cHHHHHHhhcCCCHHH
Q 015709 156 ELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG---ALSKLMKMVKSSFVEE 232 (402)
Q Consensus 156 ~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g---~L~~Ll~LL~s~~~~v 232 (402)
-|.+++..-.-|.-+.....+..+..+...++=+|-.-|...+-.+-..++.+-..++..+ .+...-+|+.+++=-+
T Consensus 137 mLREcik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVt 216 (330)
T d1upka_ 137 MLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVT 216 (330)
T ss_dssp HHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHH
Confidence 3444444444455555566777888899999999999999999999999988777777665 4667788999888778
Q ss_pred HHHHHHHHHHHh--cCChhcHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh--CC
Q 015709 233 AVKALYTVSSLI--RNNLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD--RF 307 (402)
Q Consensus 233 r~kAl~ALS~Li--R~~~~~~~~f~~-~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~--~g 307 (402)
|..++--|+.++ |.|......++. ..-+.+++.+|++++ -.+|..|-..+.=++.+. +..+.....+.. ..
T Consensus 217 rRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~s--k~Iq~EAFhVFKvFVANp--nKp~~I~~IL~~Nr~k 292 (330)
T d1upka_ 217 KRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS--RNIQFEAFHVFKVFVANP--NKTQPILDILLKNQAK 292 (330)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHHHCS--SCCHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCch--hhHHHHhhhHhhhhhcCC--CCCHHHHHHHHHhHHH
Confidence 999999999988 545554545554 357788899999874 557889988888777532 112223333332 34
Q ss_pred cHHHHHHhhcC--CChHHH
Q 015709 308 FLKSVVDLTAS--ADLDLQ 324 (402)
Q Consensus 308 ~v~~Lv~lL~~--~d~dv~ 324 (402)
++..+-+.... +|..+.
T Consensus 293 Ll~fl~~f~~d~~~DeqF~ 311 (330)
T d1upka_ 293 LIEFLSKFQNDRTEDEQFN 311 (330)
T ss_dssp HHHHHHHTTTTC-CCSHHH
T ss_pred HHHHHHhCCCCCCchhhHH
Confidence 55555554432 244444
|