Citrus Sinensis ID: 015720

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400--
MENRAFPANQPPTYANLITILSIDGGGIRGIIPGVILAYLESQLQELDGEDARLADYFDVIAGTSTGGLLTAMLTAPSEQNRPMYAAKDIVPFYIRHGPKIFPQLRGMLANSVVNLVRALMGTKYDGKYLHKVIKENLKDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAHYFKNPDEHGTLKEFNLIDGGVAANNPTLVAISEMTKHILKNPDFCPINPLDYTRFLVISIGTGSKKSEHKYNAKMASKWGIISWLYDNGDTPLLDCYGRAIGDMVDYHISVVFQALQSEDNYLRIEDDTLQGDVTSIDLTTKENFENLVRAGETLLKKPVSRINLDTGLYEPIENGSAGTNEEALKRFAKMLSDERKLRESKSPH
cccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEccHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccEEEEcccccccccEEEEcccccccccccccHHHHHHHHccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccccccHHHHHHccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccc
ccccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHcccccccHHHHEEEEccccHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHcccEEEEcccHHHcccEEEEcccHcccccccccHHHHHHHccccccccccEEEEEccccccEEEEEEEcccHHcccHHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccccccccHHHHHHcccHHHHcccccccHHHHHHHcHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHccccEEccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccc
menrafpanqpptyaNLITILsidgggirgiIPGVILAYLESQLQELDGEDARLADYFDVIAGTSTGGLLTAMLtapseqnrpmyaakdivpfyirhgpkifpqLRGMLANSVVNLVRALMGTKYDGKYLHKVIKENlkdtklhqtltnvaiptfdikklqptifssfqvaaspdldaqLADIAigtsaaptyfpahyfknpdehgtlkefnlidggvaannpTLVAISEMTKHilknpdfcpinpldyTRFLVISIgtgskkseHKYNAKMASKWGIISWlydngdtplldcygraigDMVDYHISVVFQALqsednylrieddtlqgdvtsidlttkENFENLVRAGETllkkpvsrinldtglyepiengsagtNEEALKRFAKMLSDErklresksph
menrafpanqpptyANLITILSIDGGGIRGIIPGVILAYLESQLQELDGEDARLADYFDVIAGTSTGGLLTAMLTAPSEQNRPMYAAKDIVPFYIRHGPKIFPQLRGMLANSVVNLVRALMGTKYDGKYLHKVIKEnlkdtklhqTLTNVAIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAHYFKNPDEHGTLKEFNLIDGGVAANNPTLVAISEMTKHILKNPDFCPINPLDYTRFLVISIGtgskksehkYNAKMASKWGIISWLYDNGDTPLLDCYGRAIGDMVDYHISVVFQALQSEDNYLRIEDDTLQGDVTSIDLTTKENFENLVRAgetllkkpvsrinldtglyepiengsagtneEALKRFAKMlsderklresksph
MENRAFPANQPPTYANLITILSidgggirgiipgviLAYLESQLQELDGEDARLADYFDVIAGTSTGGLLTAMLTAPSEQNRPMYAAKDIVPFYIRHGPKIFPQLRGMLANSVVNLVRALMGTKYDGKYLHKVIKENLKDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAHYFKNPDEHGTLKEFNLIDGGVAANNPTLVAISEMTKHILKNPDFCPINPLDYTRFLVISIGTGSKKSEHKYNAKMASKWGIISWLYDNGDTPLLDCYGRAIGDMVDYHISVVFQALQSEDNYLRIEDDTLQGDVTSIDLTTKENFENLVRAGETLLKKPVSRINLDTGLYEPIENGSAGTNEEALKRFAKMLSDERKLRESKSPH
************TYANLITILSIDGGGIRGIIPGVILAYLESQLQELDGEDARLADYFDVIAGTSTGGLLTAMLTAPS*QNRPMYAAKDIVPFYIRHGPKIFPQLRGMLANSVVNLVRALMGTKYDGKYLHKVIKENLKDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAHYFKNPDEHGTLKEFNLIDGGVAANNPTLVAISEMTKHILKNPDFCPINPLDYTRFLVISIGTGSKKSEHKYNAKMASKWGIISWLYDNGDTPLLDCYGRAIGDMVDYHISVVFQALQSEDNYLRIEDDTLQGDVTSIDLTTKENFENLVRAGETLLKKPVSRINLDTGLYE**********************************
****************LITILSIDGGGIRGIIPGVILAYLESQLQELDGEDARLADYFDVIAGTSTGGLLTAMLTAPSEQNRPMYAAKDIVPFYIRHGPKIFPQLRGMLANSVVNLVRALMGTKYDGKYLHKVIKENLKDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAHYFKNPDEHGTLKEFNLIDGGVAANNPTLVAISEMTKHILKNPDFCPINPLDYTRFLVISIGTGS**S****NAKMASKWGIISWLYDNGDTPLLDCYGRAIGDMVDYHISVVFQALQSEDNYLRIEDDTLQGDVTSIDLTTKENFENLVRAGETLLKKPVSRINLDTGLYEPIE*****TNEEALKRFAKMLSD***********
MENRAFPANQPPTYANLITILSIDGGGIRGIIPGVILAYLESQLQELDGEDARLADYFDVIAGTSTGGLLTAMLTAPSEQNRPMYAAKDIVPFYIRHGPKIFPQLRGMLANSVVNLVRALMGTKYDGKYLHKVIKENLKDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAHYFKNPDEHGTLKEFNLIDGGVAANNPTLVAISEMTKHILKNPDFCPINPLDYTRFLVISIGTGSKKSEHKYNAKMASKWGIISWLYDNGDTPLLDCYGRAIGDMVDYHISVVFQALQSEDNYLRIEDDTLQGDVTSIDLTTKENFENLVRAGETLLKKPVSRINLDTGLYEPIENGSAGTNEEALKRFAKMLS************
*********QPPTYANLITILSIDGGGIRGIIPGVILAYLESQLQELDGEDARLADYFDVIAGTSTGGLLTAMLTAPSEQNRPMYAAKDIVPFYIRHGPKIFPQLRGMLANSVVNLVRALMGTKYDGKYLHKVIKENLKDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAHYFKNPDEHGTLKEFNLIDGGVAANNPTLVAISEMTKHILKNPDFCPINPLDYTRFLVISIGTGSKKSEHKYNAKMASKWGIISWLYDNGDTPLLDCYGRAIGDMVDYHISVVFQALQSEDNYLRIEDDTLQGDVTSIDLTTKENFENLVRAGETLLKKPVSRINLDTGLYEPIENGSAGTNEEALKRFAKMLSDERKLR******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MENRAFPANQPPTYANLITILSIDGGGIRGIIPGVILAYLESQLQELDGEDARLADYFDVIAGTSTGGLLTAMLTAPSEQNRPMYAAKDIVPFYIRHGPKIFPQLRGMLANSVVNLVRALMGTKYDGKYLHKVIKENLKDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAHYFKNPDEHGTLKEFNLIDGGVAANNPTLVAISEMTKHILKNPDFCPINPLDYTRFLVISIGTGSKKSEHKYNAKMASKWGIISWLYDNGDTPLLDCYGRAIGDMVDYHISVVFQALQSEDNYLRIEDDTLQGDVTSIDLTTKENFENLVRAGETLLKKPVSRINLDTGLYEPIENGSAGTNEEALKRFAKMLSDERKLRESKSPH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query402 2.2.26 [Sep-21-2011]
Q2MY58387 Patatin group A-3 OS=Sola N/A no 0.910 0.945 0.468 2e-96
Q3YJT2386 Patatin-2-Kuras 2 OS=Sola N/A no 0.895 0.932 0.491 3e-92
Q3YJT3374 Patatin-2-Kuras 1 OS=Sola N/A no 0.895 0.962 0.488 3e-91
Q2MY37386 Patatin-14 OS=Solanum tub N/A no 0.885 0.922 0.496 4e-91
Q2MY51386 Patatin group M-3 OS=Sola N/A no 0.885 0.922 0.493 7e-91
P15478386 Patatin-T5 OS=Solanum tub N/A no 0.895 0.932 0.486 8e-91
Q2MY40387 Patatin-11 OS=Solanum tub N/A no 0.898 0.932 0.486 9e-91
P11768386 Patatin group M-1 OS=Sola N/A no 0.885 0.922 0.493 1e-90
Q2MY52386 Patatin group M-2 OS=Sola N/A no 0.885 0.922 0.493 1e-90
Q42502386 Patatin-2-Kuras 3 OS=Sola N/A no 0.895 0.932 0.483 2e-90
>sp|Q2MY58|PATA3_SOLTU Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function desciption
 Score =  352 bits (904), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 188/401 (46%), Positives = 253/401 (63%), Gaps = 35/401 (8%)

Query: 8   ANQPPTYANL---ITILSIDGGGIRGIIPGVILAYLESQLQELDGE-DARLADYFDVIAG 63
           A    T+A+L   +T+LSIDGGG++GIIPG IL +LE QLQ++D   DARLADYFDVI G
Sbjct: 16  ATTSSTFASLEEMVTVLSIDGGGVKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGG 75

Query: 64  TSTGGLLTAMLTAPSEQNRPMYAAKDIVPFYIRHGPKIFPQLRGMLANSVVNLVRALMGT 123
           TSTGGLLTAM+T P+E NRP  AA +IVPFY  HGP IF    G              G 
Sbjct: 76  TSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQF-----------FGP 124

Query: 124 KYDGKYLHKVIKENLKDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVAASPDLDAQLADI 183
           KYDGKYL +V++E L +T++HQ LT VAI +FDIK  +P IF+   +A SP+LDA++ DI
Sbjct: 125 KYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDI 184

Query: 184 AIGTSAAPTYFPAHYFKNPDEHGTLKEFNLIDGGVA-ANNPTLVAISEMTKHILKNPDFC 242
              T+AAPTYFP HYF     +G   EFNL+DG VA   +P L+++S  T+   ++P F 
Sbjct: 185 CYSTAAAPTYFPPHYFATNTINGDKYEFNLVDGAVATVADPALLSVSVATRRAQEDPAFA 244

Query: 243 PINPLDYTRFLVISIGTGSKKSEHK-YNAKMASKWGIISWLYDNGDTPLLDCYGRAIGDM 301
            I  L+Y + L++S+GTG+     K + A+  +KWG + W+       +      A   M
Sbjct: 245 SIRSLNYKKMLLLSLGTGTTSEFDKTHTAEETAKWGALQWML-----VIQQMTEAASSYM 299

Query: 302 VDYHISVVFQALQSEDNYLRIEDDTLQGDVTSIDLTTKENFENLVRAGETLLKKPVSRIN 361
            DY++S VFQ L S++NYLR++++ L G  T  D  ++ N E L + GE LLKKPVS+ N
Sbjct: 300 TDYYLSTVFQDLHSQNNYLRVQENALTGTTTKADDASEANMELLAQVGENLLKKPVSKDN 359

Query: 362 LDTGLYEPIENGSAGTNEEALKRFAKMLSDERKLRESKSPH 402
            +             T EEALKRFAK+LSD +KLR +K+ +
Sbjct: 360 PE-------------TYEEALKRFAKLLSDRKKLRANKASY 387
Probable lipolytic acyl hydrolase (LAH), an activity which is thought to be involved in the response of tubers to pathogens.
Solanum tuberosum (taxid: 4113)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: -
>sp|Q3YJT2|PT2K2_SOLTU Patatin-2-Kuras 2 OS=Solanum tuberosum GN=pat2-k2 PE=2 SV=1 Back     alignment and function description
>sp|Q3YJT3|PT2K1_SOLTU Patatin-2-Kuras 1 OS=Solanum tuberosum GN=pat2-k1 PE=1 SV=1 Back     alignment and function description
>sp|Q2MY37|PAT14_SOLTU Patatin-14 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q2MY51|PATM3_SOLTU Patatin group M-3 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|P15478|PATT5_SOLTU Patatin-T5 OS=Solanum tuberosum PE=1 SV=1 Back     alignment and function description
>sp|Q2MY40|PAT11_SOLTU Patatin-11 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|P11768|PATM1_SOLTU Patatin group M-1 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q2MY52|PATM2_SOLTU Patatin group M-2 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q42502|PT2K3_SOLTU Patatin-2-Kuras 3 OS=Solanum tuberosum GN=pat2-k3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query402
225458559406 PREDICTED: patatin group A-3 [Vitis vini 0.992 0.982 0.692 1e-164
359492610406 PREDICTED: patatin group A-3-like [Vitis 0.992 0.982 0.699 1e-158
359492618411 PREDICTED: patatin group A-3-like [Vitis 0.992 0.970 0.694 1e-158
302142355423 unnamed protein product [Vitis vinifera] 0.992 0.943 0.689 1e-157
359492616406 PREDICTED: patatin group A-3-like [Vitis 0.992 0.982 0.689 1e-157
225438666407 PREDICTED: patatin group A-3-like [Vitis 0.962 0.950 0.691 1e-156
296082439432 unnamed protein product [Vitis vinifera] 0.965 0.898 0.688 1e-156
224096778407 predicted protein [Populus trichocarpa] 0.965 0.953 0.686 1e-156
225458549406 PREDICTED: patatin group A-3 [Vitis vini 0.992 0.982 0.679 1e-156
147792846400 hypothetical protein VITISV_008805 [Viti 0.975 0.98 0.694 1e-155
>gi|225458559|ref|XP_002282523.1| PREDICTED: patatin group A-3 [Vitis vinifera] gi|302142346|emb|CBI19549.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 279/403 (69%), Positives = 332/403 (82%), Gaps = 4/403 (0%)

Query: 1   MENRAFPANQPPTYANLITILSIDGGGIRGIIPGVILAYLESQLQELDGEDARLADYFDV 60
           ME    P  QPPTY NL+TILSIDG GIRGIIP  ILA LESQLQELDG+DAR+ADYFDV
Sbjct: 1   MEKSLLPQIQPPTYGNLVTILSIDGRGIRGIIPATILACLESQLQELDGDDARIADYFDV 60

Query: 61  IAGTSTGGLLTAMLTAPSEQNRPMYAAKDIVPFYIRHGPKIFPQLRGMLANSVVNLVRAL 120
           IAGTSTGGL+TAMLTAP+++ RP++AAKDI PFY+ HGPKIFP  RG+    ++N+ R++
Sbjct: 61  IAGTSTGGLVTAMLTAPNDEKRPLFAAKDIKPFYLEHGPKIFPHRRGIFG-WIMNIFRSI 119

Query: 121 MGTKYDGKYLHKVIKENLKDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVAASPDLDAQL 180
           +G  YDGKYLH +IKE L  T+LHQTLT+V IPTFDIK LQP+IFSS++V  SP LDA L
Sbjct: 120 VGPNYDGKYLHNLIKEKLGRTRLHQTLTSVVIPTFDIKSLQPSIFSSYEVKRSPSLDAPL 179

Query: 181 ADIAIGTSAAPTYFPAHYFKNPDEHGTLKEFNLIDGGVAANNPTLVAISEMTKHIL-KNP 239
           ADI IG+SAAPTYFPA++FKN D+ G  +E NLIDGGVAANNP LVAIS++TK +  KNP
Sbjct: 180 ADICIGSSAAPTYFPAYFFKNQDKEGKARELNLIDGGVAANNPALVAISQVTKQVFDKNP 239

Query: 240 DFCPINPLDYTRFLVISIGTGSKKSEHKYNAKMASKWGIISWLYDNGDTPLLDCYGRAIG 299
           DF PI P+DY RFLVISIGTGS KSE KYNAKMA+KWG++ WL   G TPL+D + +A  
Sbjct: 240 DFLPIKPMDYGRFLVISIGTGSPKSEQKYNAKMAAKWGVLGWLLHGGSTPLVDVFTQASA 299

Query: 300 DMVDYHISVVFQALQSEDNYLRIEDDTLQGDVTSIDLTTKENFENLVRAGETLLKKPVSR 359
           DMVD+HISVVFQAL SEDNYLRI+DDTL G   ++D+TTKEN  NLV+ GE LLKKPVSR
Sbjct: 300 DMVDFHISVVFQALHSEDNYLRIQDDTLHGTNATVDVTTKENLGNLVKIGERLLKKPVSR 359

Query: 360 INLDTGLYEPIENGSAGTNEEALKRFAKMLSDERKLRESKSPH 402
           +NL+TGL  P+EN   GTNEEALKRFAK+LSDE++LRE++SP+
Sbjct: 360 VNLETGLSVPVEN--CGTNEEALKRFAKLLSDEKRLRETRSPN 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359492610|ref|XP_002282462.2| PREDICTED: patatin group A-3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359492618|ref|XP_002282366.2| PREDICTED: patatin group A-3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302142355|emb|CBI19558.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359492616|ref|XP_002282391.2| PREDICTED: patatin group A-3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225438666|ref|XP_002277305.1| PREDICTED: patatin group A-3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296082439|emb|CBI21444.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224096778|ref|XP_002310732.1| predicted protein [Populus trichocarpa] gi|222853635|gb|EEE91182.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225458549|ref|XP_002282432.1| PREDICTED: patatin group A-3 [Vitis vinifera] gi|302142353|emb|CBI19556.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147792846|emb|CAN68798.1| hypothetical protein VITISV_008805 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query402
TAIR|locus:2115065428 PLP4 "AT4G37050" [Arabidopsis 0.967 0.908 0.611 2.3e-126
TAIR|locus:2114995414 PLP1 [Arabidopsis thaliana (ta 0.985 0.956 0.602 1.3e-125
TAIR|locus:2066286407 PLA2A "phospholipase A 2A" [Ar 0.967 0.955 0.576 1e-116
TAIR|locus:2158337401 AT5G43590 [Arabidopsis thalian 0.950 0.952 0.536 7.1e-100
TAIR|locus:2056088499 PLP6 "PATATIN-like protein 6" 0.753 0.607 0.301 4.1e-27
TAIR|locus:2077269384 PLP9 "PATATIN-like protein 9" 0.554 0.580 0.294 8.9e-22
TAIR|locus:2082702488 pPLAIIIbeta "patatin-related p 0.621 0.512 0.320 2.6e-21
UNIPROTKB|Q9KVG8355 VC0178 "Patatin-related protei 0.791 0.895 0.252 1.2e-15
TIGR_CMR|VC_0178355 VC_0178 "patatin family protei 0.791 0.895 0.252 1.2e-15
GENEDB_PFALCIPARUM|PFB0410c679 PFB0410c "phospholipase, putat 0.624 0.369 0.247 5.3e-07
TAIR|locus:2115065 PLP4 "AT4G37050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1241 (441.9 bits), Expect = 2.3e-126, P = 2.3e-126
 Identities = 244/399 (61%), Positives = 304/399 (76%)

Query:    11 PPTYANLITILSXXXXXXXXXXXXXXLAYLESQLQELDGEDARLADYFDVIAGTSTGGLL 70
             PP+Y  L+TILS              LAYLESQLQELDGE+ARL DYFDVI+GTSTGGL+
Sbjct:    28 PPSYGQLVTILSIDGGGIRGIIPGTILAYLESQLQELDGEEARLVDYFDVISGTSTGGLI 87

Query:    71 TAMLTAPSEQ-------NRPMYAAKDIVPFYIRHGPKIFPQLRGMLANSVVNLVRALMGT 123
              AMLTA  +        NRP++ AK+IVPFY++H PKIFPQ RG+       +VR + G 
Sbjct:    88 VAMLTAQDQSGGHSRNSNRPLFEAKEIVPFYLKHSPKIFPQPRGIFCGWGETIVRLVGGP 147

Query:   124 KYDGKYLHKVIKENLKDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVAASPDLDAQLADI 183
             K++GKYLH +++  L DTKL Q+LTNV IP FDIKKLQP IFSS+Q   +  ++A+L+DI
Sbjct:   148 KFNGKYLHDLVEGFLGDTKLTQSLTNVVIPCFDIKKLQPVIFSSYQAVNNQAMNAKLSDI 207

Query:   184 AIGTSAAPTYFPAHYFKNPDEHGTLKEFNLIDGGVAANNPTLVAISEMTKHILK-NPDFC 242
              I TSAAPT+FPAH F N D  G   EFNLIDGG+AANNPTL AI+E+TK I+K NP   
Sbjct:   208 CISTSAAPTFFPAHRFTNEDSEGIKHEFNLIDGGIAANNPTLCAIAEVTKQIIKKNPVMG 267

Query:   243 PINPLDYTRFLVISIGTGSKKSEHKYNAKMASKWGIISWLYDNGDTPLLDCYGRAIGDMV 302
              I+PLD+TRFLVISIGTGS +++ KYNAKMASKWG++ W++++G TP+LDCY  AI DMV
Sbjct:   268 DISPLDFTRFLVISIGTGSIRNQEKYNAKMASKWGLMCWVFESGSTPILDCYSEAIHDMV 327

Query:   303 DYHISVVFQALQSEDNYLRIEDDTLQGDVTSIDLTTKENFENLVRAGETLLKKPVSRINL 362
             DY  SVVFQAL+SE NYLRI+DD+L+GD+ S+D++T++N E LV  GE LLKK VSR+NL
Sbjct:   328 DYQSSVVFQALRSEKNYLRIDDDSLKGDLGSVDISTEKNMEGLVEVGEALLKKRVSRVNL 387

Query:   363 DTGLYEPIENGSAGTNEEALKRFAKMLSDERKLRESKSP 401
             ++G Y+PI      TNEEALKRFAK+LS+ERKLRES+SP
Sbjct:   388 ESGHYQPISENV--TNEEALKRFAKVLSEERKLRESRSP 424
GO:0005575 "cellular_component" evidence=ND
GO:0006629 "lipid metabolic process" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0045735 "nutrient reservoir activity" evidence=ISS
GO:0004620 "phospholipase activity" evidence=IDA
GO:0009737 "response to abscisic acid stimulus" evidence=IDA
TAIR|locus:2114995 PLP1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066286 PLA2A "phospholipase A 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158337 AT5G43590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056088 PLP6 "PATATIN-like protein 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077269 PLP9 "PATATIN-like protein 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082702 pPLAIIIbeta "patatin-related phospholipase IIIbeta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KVG8 VC0178 "Patatin-related protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0178 VC_0178 "patatin family protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFB0410c PFB0410c "phospholipase, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
cd07214349 cd07214, Pat17_isozyme_like, Patatin-like phosphol 0.0
cd07215329 cd07215, Pat17_PNPLA8_PNPLA9_like2, Patatin-like p 1e-83
cd07199258 cd07199, Pat17_PNPLA8_PNPLA9_like, Patatin-like ph 5e-74
COG3621394 COG3621, COG3621, Patatin [General function predic 2e-35
cd07213288 cd07213, Pat17_PNPLA8_PNPLA9_like1, Patatin-like p 3e-31
cd07217344 cd07217, Pat17_PNPLA8_PNPLA9_like4, Patatin-like p 2e-24
cd07211308 cd07211, Pat_PNPLA8, Patatin-like phospholipase do 3e-24
pfam01734189 pfam01734, Patatin, Patatin-like phospholipase 2e-20
cd07216309 cd07216, Pat17_PNPLA8_PNPLA9_like3, Patatin-like p 1e-19
cd07212312 cd07212, Pat_PNPLA9, Patatin-like phospholipase do 5e-18
cd01819155 cd01819, Patatin_and_cPLA2, Patatins and Phospholi 2e-10
cd07207194 cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like pr 7e-06
cd07198172 cd07198, Patatin, Patatin-like phospholipase 4e-05
cd07205175 cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like 0.003
>gnl|CDD|132853 cd07214, Pat17_isozyme_like, Patatin-like phospholipase of plants Back     alignment and domain information 
 Score =  529 bits (1365), Expect = 0.0
 Identities = 220/350 (62%), Positives = 268/350 (76%), Gaps = 4/350 (1%)

Query: 17  LITILSIDGGGIRGIIPGVILAYLESQLQELDGEDARLADYFDVIAGTSTGGLLTAMLTA 76
            IT+LSIDGGGIRGIIP  IL +LE +LQELDG DAR+ADYFDVIAGTSTGGL+TAMLTA
Sbjct: 3   FITVLSIDGGGIRGIIPATILEFLEGKLQELDGPDARIADYFDVIAGTSTGGLITAMLTA 62

Query: 77  PSEQNRPMYAAKDIVPFYIRHGPKIFPQLRGMLANSVVNLVRALMGTKYDGKYLHKVIKE 136
           P+E  RP++AAKDIV FY+ +GPKIFPQ  G         +R+L+G KYDG YLH ++ E
Sbjct: 63  PNENKRPLFAAKDIVQFYLENGPKIFPQSTGQFE-DDRKKLRSLLGPKYDGVYLHDLLNE 121

Query: 137 NLKDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPA 196
            L DT+L  TLTNV IPTFDIK LQP IFSS +       +A+LAD+ I TSAAPTYFPA
Sbjct: 122 LLGDTRLSDTLTNVVIPTFDIKLLQPVIFSSSKAKNDKLTNARLADVCISTSAAPTYFPA 181

Query: 197 HYFKNPDEHGTLKEFNLIDGGVAANNPTLVAISEMTKHILK-NPDFCPINPLDYTRFLVI 255
           HYF   D +G ++EFNL+DGGVAANNPTL+AISE+TK I+K NP F  I PLDY + LV+
Sbjct: 182 HYFTTEDSNGDIREFNLVDGGVAANNPTLLAISEVTKEIIKDNPFFASIKPLDYKKLLVL 241

Query: 256 SIGTGSKKSEHKYNAKMASKWGIISWLYDNGDTPLLDCYGRAIGDMVDYHISVVFQALQS 315
           S+GTGS  +E  Y    A+KWG+I+WL +NG TP++D +  A  DMVDYH+SV+FQAL S
Sbjct: 242 SLGTGS--AEESYKYNAAAKWGLITWLSENGXTPIIDIFSNASSDMVDYHLSVIFQALDS 299

Query: 316 EDNYLRIEDDTLQGDVTSIDLTTKENFENLVRAGETLLKKPVSRINLDTG 365
           E NYLRI+DD+L G  +S+D  T+EN E LV  G+ LLKKPVSR+NL+TG
Sbjct: 300 EKNYLRIQDDSLTGTASSVDDATEENLEKLVEIGKKLLKKPVSRVNLETG 349

Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates. Length = 349
>gnl|CDD|132854 cd07215, Pat17_PNPLA8_PNPLA9_like2, Patatin-like phospholipase of bacteria Back     alignment and domain information
>gnl|CDD|132838 cd07199, Pat17_PNPLA8_PNPLA9_like, Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17 Back     alignment and domain information
>gnl|CDD|226148 COG3621, COG3621, Patatin [General function prediction only] Back     alignment and domain information
>gnl|CDD|132852 cd07213, Pat17_PNPLA8_PNPLA9_like1, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132856 cd07217, Pat17_PNPLA8_PNPLA9_like4, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132850 cd07211, Pat_PNPLA8, Patatin-like phospholipase domain containing protein 8 Back     alignment and domain information
>gnl|CDD|216671 pfam01734, Patatin, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132855 cd07216, Pat17_PNPLA8_PNPLA9_like3, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132851 cd07212, Pat_PNPLA9, Patatin-like phospholipase domain containing protein 9 Back     alignment and domain information
>gnl|CDD|132836 cd01819, Patatin_and_cPLA2, Patatins and Phospholipases Back     alignment and domain information
>gnl|CDD|132846 cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2 Back     alignment and domain information
>gnl|CDD|132837 cd07198, Patatin, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132844 cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 402
cd07214349 Pat17_isozyme_like Patatin-like phospholipase of p 100.0
cd07215329 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipa 100.0
cd07211308 Pat_PNPLA8 Patatin-like phospholipase domain conta 100.0
cd07216309 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipa 100.0
cd07213288 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipa 100.0
cd07212312 Pat_PNPLA9 Patatin-like phospholipase domain conta 100.0
cd07217344 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipa 100.0
cd07199258 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipas 100.0
KOG4231763 consensus Intracellular membrane-bound Ca2+-indepe 100.0
COG3621394 Patatin [General function prediction only] 100.0
cd07225306 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domai 100.0
cd07205175 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholi 100.0
cd07207194 Pat_ExoU_VipD_like ExoU and VipD-like proteins; ho 100.0
KOG0513503 consensus Ca2+-independent phospholipase A2 [Lipid 100.0
cd07228175 Pat_NTE_like_bacteria Bacterial patatin-like phosp 99.97
cd07210221 Pat_hypo_W_succinogenes_WS1459_like Hypothetical p 99.97
cd07227269 Pat_Fungal_NTE1 Fungal patatin-like phospholipase 99.97
PRK10279300 hypothetical protein; Provisional 99.96
cd07209215 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin sim 99.96
cd07208266 Pat_hypo_Ecoli_yjju_like Hypothetical patatin simi 99.96
cd07198172 Patatin Patatin-like phospholipase. Patatin is a s 99.94
cd07218245 Pat_iPLA2 Calcium-independent phospholipase A2; Cl 99.93
cd07232407 Pat_PLPL Patain-like phospholipase. Patatin-like p 99.92
cd07204243 Pat_PNPLA_like Patatin-like phospholipase domain c 99.92
cd07222246 Pat_PNPLA4 Patatin-like phospholipase domain conta 99.92
cd07221252 Pat_PNPLA3 Patatin-like phospholipase domain conta 99.92
cd07230421 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TG 99.92
COG1752306 RssA Predicted esterase of the alpha-beta hydrolas 99.92
cd07219382 Pat_PNPLA1 Patatin-like phospholipase domain conta 99.91
cd07220249 Pat_PNPLA2 Patatin-like phospholipase domain conta 99.9
PF01734204 Patatin: Patatin-like phospholipase This Prosite f 99.89
cd07224233 Pat_like Patatin-like phospholipase. Patatin-like 99.88
cd07229391 Pat_TGL3_like Triacylglycerol lipase 3. Triacylgly 99.85
cd07223405 Pat_PNPLA5-mammals Patatin-like phospholipase doma 99.85
cd07206298 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 99.84
KOG29681158 consensus Predicted esterase of the alpha-beta hyd 99.83
cd07231323 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar 99.83
COG4667292 Predicted esterase of the alpha-beta hydrolase sup 99.82
TIGR03607 739 patatin-related protein. This bacterial protein fa 99.78
cd01819155 Patatin_and_cPLA2 Patatins and Phospholipases. Pat 99.77
KOG2214543 consensus Predicted esterase of the alpha-beta hyd 99.53
KOG0513503 consensus Ca2+-independent phospholipase A2 [Lipid 99.28
KOG3773354 consensus Adiponutrin and related vesicular transp 99.03
cd00147438 cPLA2_like Cytosolic phospholipase A2, catalytic d 97.41
cd07202430 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase 93.8
cd07201 541 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and 90.81
PF01735 491 PLA2_B: Lysophospholipase catalytic domain; InterP 88.87
KOG1325 571 consensus Lysophospholipase [Lipid transport and m 85.86
smart00022549 PLAc Cytoplasmic phospholipase A2, catalytic subun 83.59
cd07200505 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2 83.18
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants Back     alignment and domain information 
Probab=100.00  E-value=6.4e-73  Score=555.77  Aligned_cols=348  Identities=63%  Similarity=1.046  Sum_probs=299.1

Q ss_pred             CCceEEEEEeCCchhHHHHHHHHHHHHHHhhhhcCCCCCCCCCccEEEecchHHHHHHHHhCCCCCCCccCCHhHHHHHH
Q 015720           15 ANLITILSIDGGGIRGIIPGVILAYLESQLQELDGEDARLADYFDVIAGTSTGGLLTAMLTAPSEQNRPMYAAKDIVPFY   94 (402)
Q Consensus        15 ~~~~~iLsLdGGG~RG~~~~~iL~~Le~~~~~~~g~~~~~~~~fDli~GTStG~iia~~l~~~~~~~~~~~s~~e~~~~y   94 (402)
                      ++++|||||||||+||+++++||++||++++++.|++.+++++||+|+|||||||||++|+.+..+++|+++++|+.++|
T Consensus         1 ~~~~rILslDGGGiRGi~~a~iL~~lE~~l~~~~g~~~~i~~~FDliaGTStGgiiA~~la~~~~~~~p~~~~~e~~~~y   80 (349)
T cd07214           1 GKFITVLSIDGGGIRGIIPATILEFLEGKLQELDGPDARIADYFDVIAGTSTGGLITAMLTAPNENKRPLFAAKDIVQFY   80 (349)
T ss_pred             CCceEEEEECCCchhhHHHHHHHHHHHHHHHHhcCCCCCHhHhCCEEeeCCHHHHHHHHHhcCCCCCCCccCHHHHHHHH
Confidence            46799999999999999999999999999998888888999999999999999999999999877789999999999999


Q ss_pred             HHhCCCcCCccccchhhhHHHHHHhhhcCCCChHHHHHHHHHHcccccccccCCceEEeeecCCCCcceeecCCCCCCCC
Q 015720           95 IRHGPKIFPQLRGMLANSVVNLVRALMGTKYDGKYLHKVIKENLKDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVAASP  174 (402)
Q Consensus        95 ~~~~~~iF~~~~~~~~~~~~~~~~~l~~~~y~~~~l~~~l~~~~~~~~l~d~~~~l~V~a~d~~~~~p~~f~~~~~~~~~  174 (402)
                      .+.+.+||++....+. .+++.+..+.+++|+++.|+++|+++|++.+|.|+.++++|++||+.+++|++|++|....+.
T Consensus        81 ~~~~~~iF~~~~~~~~-~~~~~~~~~~~~~y~~~~L~~~L~~~~gd~~l~d~~~~v~I~a~dl~~~~p~~F~~~~~~~~~  159 (349)
T cd07214          81 LENGPKIFPQSTGQFE-DDRKKLRSLLGPKYDGVYLHDLLNELLGDTRLSDTLTNVVIPTFDIKLLQPVIFSSSKAKNDK  159 (349)
T ss_pred             HHhhHHhcCCCcccch-hHHHHHHHhccCccCcHHHHHHHHHHhccccHhhhCCceEEEeEECCCCCeEEEeCccccCCc
Confidence            9999999987642222 233445666789999999999999999999999999999999999999999999999876666


Q ss_pred             CCCchHHHHHHhhcCCCCCCCceeecCCCCCCCcceeeeeeccccCCchHHHHHHHHHHHhhc-CCCCCCCCCCCCCceE
Q 015720          175 DLDAQLADIAIGTSAAPTYFPAHYFKNPDEHGTLKEFNLIDGGVAANNPTLVAISEMTKHILK-NPDFCPINPLDYTRFL  253 (402)
Q Consensus       175 ~~~~~l~da~~ASsAaP~yFpp~~i~~~~~~G~~~~~~~iDGGv~~NnP~~~al~ea~~~~~~-~~~~~p~~~~~~~~~~  253 (402)
                      ..+.++||||+||||||+||||+.+...+..|..+++.||||||++|||+++|+.||.+.... .+.++..+..+.++++
T Consensus       160 ~~~~~l~da~rASSAaPtyFpp~~i~~~~~~g~~~~~~~vDGGv~aNNP~~~A~~ea~~~~~~~~~~~~~~~~~~~~~i~  239 (349)
T cd07214         160 LTNARLADVCISTSAAPTYFPAHYFTTEDSNGDIREFNLVDGGVAANNPTLLAISEVTKEIIKDNPFFASIKPLDYKKLL  239 (349)
T ss_pred             ccCcCHHHHHHHhcccccccCCeEeecccCCCCcceEEEecCceecCCHHHHHHHHHHHhhhccCcccccccCCCCCeEE
Confidence            678999999999999999999999875432233345689999999999999999999875321 2222222334567899


Q ss_pred             EEEecCCCCCCCcccchhhhcccccccccccCCCchHHHHHHhhhhhHHHHHHHHHHHhcCCCCcEEEeecCCCCCCCcc
Q 015720          254 VISIGTGSKKSEHKYNAKMASKWGIISWLYDNGDTPLLDCYGRAIGDMVDYHISVVFQALQSEDNYLRIEDDTLQGDVTS  333 (402)
Q Consensus       254 vlSiGTG~~~~~~~~~~~~~~~~g~~~w~~~~~~~~l~~~~~~a~~~~~~~~~~~l~~~~~~~~~Y~Ri~~~~~~~~~~~  333 (402)
                      |||||||.....  +..++..+||+++|+......||++++|+++++++|++++++|+.+.++++|+|||++.+.....+
T Consensus       240 vlSiGTG~~~~~--~~~~~~~~wG~~~W~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~~~~~~~~~  317 (349)
T cd07214         240 VLSLGTGSAEES--YKYNAAAKWGLITWLSENGXTPIIDIFSNASSDMVDYHLSVIFQALDSEKNYLRIQDDSLTGTASS  317 (349)
T ss_pred             EEEecCCCcccc--cChhhhccCCeeecccccCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCCCcccC
Confidence            999999996543  555666899999999665557899999999999999999999987778899999998655544478


Q ss_pred             cccccHHHHHHHHHHHHHHhcccccccccCCC
Q 015720          334 IDLTTKENFENLVRAGETLLKKPVSRINLDTG  365 (402)
Q Consensus       334 lD~~s~~~i~~L~~~a~~~l~~~~~~~~~~~~  365 (402)
                      ||+++++||+.|+.+|+++++++...+|++||
T Consensus       318 ~d~~~~~ni~~L~~~a~~~l~~~~~~~~~~~~  349 (349)
T cd07214         318 VDDATEENLEKLVEIGKKLLKKPVSRVNLETG  349 (349)
T ss_pred             cccCCHHHHHHHHHHHHHHHhCcccccCCCCC
Confidence            99999999999999999999999999999997

Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria Back     alignment and domain information
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8 Back     alignment and domain information
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase Back     alignment and domain information
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase Back     alignment and domain information
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9 Back     alignment and domain information
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase Back     alignment and domain information
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17 Back     alignment and domain information
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>COG3621 Patatin [General function prediction only] Back     alignment and domain information
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7 Back     alignment and domain information
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1 Back     alignment and domain information
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2 Back     alignment and domain information
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6 Back     alignment and domain information
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes Back     alignment and domain information
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6 Back     alignment and domain information
>PRK10279 hypothetical protein; Provisional Back     alignment and domain information
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli Back     alignment and domain information
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli Back     alignment and domain information
>cd07198 Patatin Patatin-like phospholipase Back     alignment and domain information
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2 Back     alignment and domain information
>cd07232 Pat_PLPL Patain-like phospholipase Back     alignment and domain information
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family Back     alignment and domain information
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4 Back     alignment and domain information
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3 Back     alignment and domain information
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5 Back     alignment and domain information
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1 Back     alignment and domain information
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2 Back     alignment and domain information
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2 Back     alignment and domain information
>cd07224 Pat_like Patatin-like phospholipase Back     alignment and domain information
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3 Back     alignment and domain information
>cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5 Back     alignment and domain information
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase Back     alignment and domain information
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>TIGR03607 patatin-related protein Back     alignment and domain information
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases Back     alignment and domain information
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>KOG3773 consensus Adiponutrin and related vesicular transport proteins; predicted alpha/beta hydrolase [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00147 cPLA2_like Cytosolic phospholipase A2, catalytic domain; hydrolyses arachidonyl phospholipids Back     alignment and domain information
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent Back     alignment and domain information
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent Back     alignment and domain information
>PF01735 PLA2_B: Lysophospholipase catalytic domain; InterPro: IPR002642 This family consists of lysophospholipase / phospholipase B 3 Back     alignment and domain information
>KOG1325 consensus Lysophospholipase [Lipid transport and metabolism] Back     alignment and domain information
>smart00022 PLAc Cytoplasmic phospholipase A2, catalytic subunit Back     alignment and domain information
>cd07200 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2; catalytic domain; Ca-dependent Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
1oxw_A373 The Crystal Structure Of Semet Patatin Length = 373 2e-85
>pdb|1OXW|A Chain A, The Crystal Structure Of Semet Patatin Length = 373 Back     alignment and structure 
Iteration: 1

 Score =  312 bits (800), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 177/389 (45%), Positives = 233/389 (59%), Gaps = 35/389 (8%)
Query: 18  ITILSXXXXXXXXXXXXXXLAYLESQLQELDGE-DARLADYFDVIAGTSTGGLLTAMLTA 76
           +T+LS              L +LE QLQE D   DARLADYFDVI GTSTGGLLTA ++ 
Sbjct: 16  VTVLSIDGGGIRGIIPATILEFLEGQLQEXDNNADARLADYFDVIGGTSTGGLLTAXIST 75
Query: 77  PSEQNRPMYAAKDIVPFYIRHGPKIFPQLRGMLANSVVNLVRALMGTKYDGKYLHKVIKE 136
           P+E NRP  AAK+IVPFY  HGP+IF            N    ++G KYDGKYL +V++E
Sbjct: 76  PNENNRPFAAAKEIVPFYFEHGPQIF------------NPSGQILGPKYDGKYLXQVLQE 123
Query: 137 NLKDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPA 196
            L +T++HQ LT V I +FDIK  +P IF+   +A SP+LDA+  DI+  T+AAPTYFP 
Sbjct: 124 KLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKXYDISYSTAAAPTYFPP 183
Query: 197 HYFKNPDEHGTLKEFNLIDGGVA-ANNPTLVAISEMTKHILKNPDFCPINPLDYTRFLVI 255
           HYF     +G   EFNL+DG VA   +P L++IS  T+   K+P F  I  L+Y + L++
Sbjct: 184 HYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYKKXLLL 243
Query: 256 SIGTGSKKSEHK-YNAKMASKWGIISW-LYDNGDTPLLDCYGRAIGDMVDYHISVVFQAL 313
           S+GTG+     K Y AK A+ W  + W L     T     Y        DY++S  FQAL
Sbjct: 244 SLGTGTTSEFDKTYTAKEAATWTAVHWXLVIQKXTDAASSY------XTDYYLSTAFQAL 297
Query: 314 QSEDNYLRIEDDTLQGDVTSIDLTTKENFENLVRAGETLLKKPVSRINLDTGLYEPIENG 373
            S++NYLR++++ L G  T  D  ++ N E LV+ GE LLKKPVS  N +          
Sbjct: 298 DSKNNYLRVQENALTGTTTEXDDASEANXELLVQVGENLLKKPVSEDNPE---------- 347
Query: 374 SAGTNEEALKRFAKMLSDERKLRESKSPH 402
              T EEALKRFAK+LSD +KLR +K+ +
Sbjct: 348 ---TYEEALKRFAKLLSDRKKLRANKASY 373

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
1oxw_A373 Patatin; alpha/beta class fold with approximately 1e-124
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
3tu3_B 711 EXOU; type III secretion system, SPC infectious di 8e-04
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3 Length = 373 Back     alignment and structure
 Score =  361 bits (928), Expect = e-124
 Identities = 190/405 (46%), Positives = 252/405 (62%), Gaps = 35/405 (8%)

Query: 1   MENRAFPANQPPTYANLITILSIDGGGIRGIIPGVILAYLESQLQELDGE-DARLADYFD 59
           M +             ++T+LSIDGGGIRGIIP  IL +LE QLQE+D   DARLADYFD
Sbjct: 1   MHHHHHH--AMAQLGEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFD 58

Query: 60  VIAGTSTGGLLTAMLTAPSEQNRPMYAAKDIVPFYIRHGPKIFPQLRGMLANSVVNLVRA 119
           VI GTSTGGLLTAM++ P+E NRP  AAK+IVPFY  HGP+IF     +L          
Sbjct: 59  VIGGTSTGGLLTAMISTPNENNRPFAAAKEIVPFYFEHGPQIFNPSGQIL---------- 108

Query: 120 LMGTKYDGKYLHKVIKENLKDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVAASPDLDAQ 179
             G KYDGKYL +V++E L +T++HQ LT V I +FDIK  +P IF+   +A SP+LDA+
Sbjct: 109 --GPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAK 166

Query: 180 LADIAIGTSAAPTYFPAHYFKNPDEHGTLKEFNLIDGGVAA-NNPTLVAISEMTKHILKN 238
           + DI+  T+AAPTYFP HYF     +G   EFNL+DG VA   +P L++IS  T+   K+
Sbjct: 167 MYDISYSTAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATRLAQKD 226

Query: 239 PDFCPINPLDYTRFLVISIGTGSKKSEHK-YNAKMASKWGIISWLYDNGDTPLLDCYGRA 297
           P F  I  L+Y + L++S+GTG+     K Y AK A+ W  + W+       +      A
Sbjct: 227 PAFASIRSLNYKKMLLLSLGTGTTSEFDKTYTAKEAATWTAVHWML-----VIQKMTDAA 281

Query: 298 IGDMVDYHISVVFQALQSEDNYLRIEDDTLQGDVTSIDLTTKENFENLVRAGETLLKKPV 357
              M DY++S  FQAL S++NYLR++++ L G  T +D  ++ N E LV+ GE LLKKPV
Sbjct: 282 SSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENLLKKPV 341

Query: 358 SRINLDTGLYEPIENGSAGTNEEALKRFAKMLSDERKLRESKSPH 402
           S  N +             T EEALKRFAK+LSD +KLR +K+ +
Sbjct: 342 SEDNPE-------------TYEEALKRFAKLLSDRKKLRANKASY 373
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3tu3_B EXOU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_B* Length = 711 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query402
1oxw_A373 Patatin; alpha/beta class fold with approximately 100.0
4akf_A577 VIPD; transferase; 2.90A {Legionella pneumophila} 99.94
3tu3_B 711 EXOU; type III secretion system, SPC infectious di 99.91
1cjy_A 749 CPLA2, protein (cytosolic phospholipase A2); lipid 96.11
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3 Back     alignment and structure
Probab=100.00  E-value=9.3e-72  Score=552.46  Aligned_cols=358  Identities=52%  Similarity=0.893  Sum_probs=313.3

Q ss_pred             CCCCceEEEEEeCCchhHHHHHHHHHHHHHHhhhhcCC-CCCCCCCccEEEecchHHHHHHHHhCCCCCCCccCCHhHHH
Q 015720           13 TYANLITILSIDGGGIRGIIPGVILAYLESQLQELDGE-DARLADYFDVIAGTSTGGLLTAMLTAPSEQNRPMYAAKDIV   91 (402)
Q Consensus        13 ~~~~~~~iLsLdGGG~RG~~~~~iL~~Le~~~~~~~g~-~~~~~~~fDli~GTStG~iia~~l~~~~~~~~~~~s~~e~~   91 (402)
                      ++++++++|||||||+||+++++||++||++++++.|+ +.+++++||+|+|||+|||+|++|+.+...++|+|+++++.
T Consensus        11 ~~~~~~~~LsLdGGG~RG~~~~gvL~~Lee~l~~~~G~~~~~i~~~fD~I~GTS~Gaiiaa~la~g~~~~r~~~s~~el~   90 (373)
T 1oxw_A           11 QLGEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEIV   90 (373)
T ss_dssp             -CCSCEEEEEECCCGGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSSCGGGHH
T ss_pred             CCCCCeEEEEEcCCcHHHHHHHHHHHHHHHHHHhhcCCccCCchhhCCEEEEECHHHHHHHHHhcCCccCCCcCCHHHHH
Confidence            34467899999999999999999999999999887774 67888999999999999999999999876678999999999


Q ss_pred             HHHHHhCCCcCCccccchhhhHHHHHHhhhcCCCChHHHHHHHHHHcccccccccCCceEEeeecCCCCcceeecCCCCC
Q 015720           92 PFYIRHGPKIFPQLRGMLANSVVNLVRALMGTKYDGKYLHKVIKENLKDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVA  171 (402)
Q Consensus        92 ~~y~~~~~~iF~~~~~~~~~~~~~~~~~l~~~~y~~~~l~~~l~~~~~~~~l~d~~~~l~V~a~d~~~~~p~~f~~~~~~  171 (402)
                      ++|.++..++|....            .+.+++|+.+.|++.|++.|++.++.|+.++++|++||+.+++|++|++|..+
T Consensus        91 ~~~~~~~~~iF~~~~------------~l~~~~~~~~~L~~~l~~~~~~~~l~d~~~~~~i~atd~~~~~~~~f~~~~~~  158 (373)
T 1oxw_A           91 PFYFEHGPQIFNPSG------------QILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLA  158 (373)
T ss_dssp             HHHHHHHHHHTCCCC------------CSSSCSCCCHHHHHHHHHHHTTCBGGGCSSEEEEEEEETTTTEEEEEESSSTT
T ss_pred             HHHHHhhHhhcCCCC------------ccccCCcCcHHHHHHHHHHHCcCcHHHcCCCEEEEeEECCCCCeEEEeCCCCC
Confidence            999998888887643            12468999999999999999999999999999999999999999999999876


Q ss_pred             CCCCCCchHHHHHHhhcCCCCCCCceeecCCCCCCCcceeeeeeccccC-CchHHHHHHHHHHHhh-cCCCCCCCCCCCC
Q 015720          172 ASPDLDAQLADIAIGTSAAPTYFPAHYFKNPDEHGTLKEFNLIDGGVAA-NNPTLVAISEMTKHIL-KNPDFCPINPLDY  249 (402)
Q Consensus       172 ~~~~~~~~l~da~~ASsAaP~yFpp~~i~~~~~~G~~~~~~~iDGGv~~-NnP~~~al~ea~~~~~-~~~~~~p~~~~~~  249 (402)
                      ..+..+..+|+|++||||+|+||||+.+...|.+|+.++..|+|||+.+ |||+..|+.|+.+ +| .++.+++.++.+.
T Consensus       159 ~~~~~~~~l~~av~ASsA~P~~F~p~~i~~~d~~G~~~~~~~vDGGv~~~NnP~~~a~~ea~~-~~~~~~~~~~~~~~~~  237 (373)
T 1oxw_A          159 NSPELDAKMYDISYSTAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATR-LAQKDPAFASIRSLNY  237 (373)
T ss_dssp             TCGGGCCBHHHHHHHHHCCTTTSCCEEEEEECTTSCEEEEEEEEGGGGTCSSCHHHHHHHHHH-HTTTCGGGTTSTTCCG
T ss_pred             CCCccCchHHHHHHHHccCCcCcCcEEeeccCCCCcccceeeecCcccccCChHHHHHHHHHH-HhccCccccccccccc
Confidence            6566788999999999999999999999754333533345899999999 9999999999865 45 3445666666677


Q ss_pred             CceEEEEecCCCCC-CCcccchhhhcccccccccccCCCchHHHHHHhhhhhHHHHHHHHHHHhcCCCCcEEEeecCCCC
Q 015720          250 TRFLVISIGTGSKK-SEHKYNAKMASKWGIISWLYDNGDTPLLDCYGRAIGDMVDYHISVVFQALQSEDNYLRIEDDTLQ  328 (402)
Q Consensus       250 ~~~~vlSiGTG~~~-~~~~~~~~~~~~~g~~~w~~~~~~~~l~~~~~~a~~~~~~~~~~~l~~~~~~~~~Y~Ri~~~~~~  328 (402)
                      ++++|||||||..+ ....++..+..+||+++|+.     ||++++++++++++|++++++|+.+.++++|||||++.++
T Consensus       238 ~~~~vvSlGTG~~~~~~~~~~~~~~~~wG~~~w~~-----~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~~l~  312 (373)
T 1oxw_A          238 KKMLLLSLGTGTTSEFDKTYTAKEAATWTAVHWML-----VIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALT  312 (373)
T ss_dssp             GGEEEEEECCCCBCTTSSCCCHHHHTTCCHHHHHT-----THHHHHHHHHHHHHHHHHHHHHHHTTCGGGEEEECCCCBC
T ss_pred             CceEEEEecCCCCCCcccccChhhhhhhhhHhHHH-----HHHHHHHHhhHHHHHHHHHHHhhccCCCCcEEEEeCCCCC
Confidence            88999999999953 33457777788999999984     7999999999999999999999887788999999986577


Q ss_pred             CCCcccccccHHHHHHHHHHHHHHhcccccccccCCCccccccCCCCCchHHHHHHHHHHHHHHHhhhhhcCC
Q 015720          329 GDVTSIDLTTKENFENLVRAGETLLKKPVSRINLDTGLYEPIENGSAGTNEEALKRFAKMLSDERKLRESKSP  401 (402)
Q Consensus       329 ~~~~~lD~~s~~~i~~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~a~~l~~~r~~r~~~~~  401 (402)
                      +...+||+++++||+.|+++|++|+++++.++|++|             |+|+|++||++|+.||++|+.+.|
T Consensus       313 ~~~~~lD~~~~~~l~~L~~~~~~~l~~~~~~~~~~t-------------n~~~l~~~a~~L~~e~~~r~~~~~  372 (373)
T 1oxw_A          313 GTTTEMDDASEANMELLVQVGENLLKKPVSEDNPET-------------YEEALKRFAKLLSDRKKLRANKAS  372 (373)
T ss_dssp             GGGGCTTCCCHHHHHHHHHHHHHHHTSBSSSSCCCB-------------HHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             CcccccccCCHHHHHHHHHHHHHHHhcccccccchh-------------HHHHHHHHHHHHHHHhhcccccCC
Confidence            778899999999999999999999999999988865             899999999999999999999876
>4akf_A VIPD; transferase; 2.90A {Legionella pneumophila} Back     alignment and structure
>3tu3_B EXOU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_B* Back     alignment and structure
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 402
d1oxwa_360 c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solan 3e-97
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} Length = 360 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: Patatin
domain: Patatin
species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]

 Score =  292 bits (748), Expect = 3e-97
 Identities = 189/388 (48%), Positives = 249/388 (64%), Gaps = 33/388 (8%)

Query: 16  NLITILSIDGGGIRGIIPGVILAYLESQLQELDGE-DARLADYFDVIAGTSTGGLLTAML 74
            ++T+LSIDGGGIRGIIP  IL +LE QLQE+D   DARLADYFDVI GTSTGGLLTAM+
Sbjct: 3   EMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMI 62

Query: 75  TAPSEQNRPMYAAKDIVPFYIRHGPKIFPQLRGMLANSVVNLVRALMGTKYDGKYLHKVI 134
           + P+E NRP  AAK+IVPFY  HGP+IF     +L            G KYDGKYL +V+
Sbjct: 63  STPNENNRPFAAAKEIVPFYFEHGPQIFNPSGQIL------------GPKYDGKYLMQVL 110

Query: 135 KENLKDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYF 194
           +E L +T++HQ LT V I +FDIK  +P IF+   +A SP+LDA++ DI+  T+AAPTYF
Sbjct: 111 QEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDISYSTAAAPTYF 170

Query: 195 PAHYFKNPDEHGTLKEFNLIDGGVAAN-NPTLVAISEMTKHILKNPDFCPINPLDYTRFL 253
           P HYF     +G   EFNL+DG VA   +P L++IS  T+   K+P F  I  L+Y + L
Sbjct: 171 PPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYKKML 230

Query: 254 VISIGTGSKKSEHK-YNAKMASKWGIISWLYDNGDTPLLDCYGRAIGDMVDYHISVVFQA 312
           ++S+GTG+     K Y AK A+ W  + W+       +      A   M DY++S  FQA
Sbjct: 231 LLSLGTGTTSEFDKTYTAKEAATWTAVHWML-----VIQKMTDAASSYMTDYYLSTAFQA 285

Query: 313 LQSEDNYLRIEDDTLQGDVTSIDLTTKENFENLVRAGETLLKKPVSRINLDTGLYEPIEN 372
           L S++NYLR++++ L G  T +D  ++ N E LV+ GE LLKKPVS  N +         
Sbjct: 286 LDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENLLKKPVSEDNPE--------- 336

Query: 373 GSAGTNEEALKRFAKMLSDERKLRESKS 400
               T EEALKRFAK+LSD +KLR +K+
Sbjct: 337 ----TYEEALKRFAKLLSDRKKLRANKA 360

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query402
d1oxwa_360 Patatin {Heartleaf nightshade (Solanum cardiophyll 100.0
d1cjya2 580 Cytosolic phospholipase A2 catalytic domain {Human 94.77
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: Patatin
domain: Patatin
species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]

Probab=100.00  E-value=1.9e-59  Score=460.23  Aligned_cols=355  Identities=53%  Similarity=0.886  Sum_probs=297.1

Q ss_pred             CCceEEEEEeCCchhHHHHHHHHHHHHHHhhhhcC-CCCCCCCCccEEEecchHHHHHHHHhCCCCCCCccCCHhHHHHH
Q 015720           15 ANLITILSIDGGGIRGIIPGVILAYLESQLQELDG-EDARLADYFDVIAGTSTGGLLTAMLTAPSEQNRPMYAAKDIVPF   93 (402)
Q Consensus        15 ~~~~~iLsLdGGG~RG~~~~~iL~~Le~~~~~~~g-~~~~~~~~fDli~GTStG~iia~~l~~~~~~~~~~~s~~e~~~~   93 (402)
                      ++.++||||||||+||+++++||++||+++.+..+ ++.+++++||+|+|||+|||||++|+.+.....+.++..++.+.
T Consensus         2 ~~~v~iLsldGGG~rG~~~~~vL~~L~~~~~~~~~~~~~~~~d~fD~i~GTS~Gaiia~~la~g~~~~~~~~~~~~~~~~   81 (360)
T d1oxwa_           2 GEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEIVPF   81 (360)
T ss_dssp             CSCEEEEEECCCGGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSSCGGGHHHH
T ss_pred             CCceEEEEECCCHHHHHHHHHHHHHHHHcCCcccccCCCChhhhCCEEEEecHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence            57899999999999999999999999999877654 56789999999999999999999999987777778889999999


Q ss_pred             HHHhCCCcCCccccchhhhHHHHHHhhhcCCCChHHHHHHHHHHcccccccccCCceEEeeecCCCCcceeecCCCCCCC
Q 015720           94 YIRHGPKIFPQLRGMLANSVVNLVRALMGTKYDGKYLHKVIKENLKDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVAAS  173 (402)
Q Consensus        94 y~~~~~~iF~~~~~~~~~~~~~~~~~l~~~~y~~~~l~~~l~~~~~~~~l~d~~~~l~V~a~d~~~~~p~~f~~~~~~~~  173 (402)
                      |......+|....            .+.++.|+.+.++++|++.|++.++.+..+++.+++++..++++++|++++....
T Consensus        82 ~~~~~~~~f~~~~------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  149 (360)
T d1oxwa_          82 YFEHGPQIFNPSG------------QILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANS  149 (360)
T ss_dssp             HHHHHHHHTCCCC------------CSSSCSCCCHHHHHHHHHHHTTCBGGGCSSEEEEEEEETTTTEEEEEESSSTTTC
T ss_pred             HHhhcchhhhccc------------cccCcccchHHHHHHHHHHhCCchhhhccCcceeEecccCCCCeEEEeccccccC
Confidence            9887777776543            1246899999999999999999999999999999999999999999999887766


Q ss_pred             CCCCchHHHHHHhhcCCCCCCCceeecCCCCCCCcceeeeeeccccCC-chHHHHHHHHHHHhhcCCCCCCCCCCCCCce
Q 015720          174 PDLDAQLADIAIGTSAAPTYFPAHYFKNPDEHGTLKEFNLIDGGVAAN-NPTLVAISEMTKHILKNPDFCPINPLDYTRF  252 (402)
Q Consensus       174 ~~~~~~l~da~~ASsAaP~yFpp~~i~~~~~~G~~~~~~~iDGGv~~N-nP~~~al~ea~~~~~~~~~~~p~~~~~~~~~  252 (402)
                      +..+.++|+|++||||+|+||||+++.+....|....+.|+|||+.+| ||+..|+.|+......++.+......+.+.+
T Consensus       150 ~~~~~~l~~a~~ASsA~P~~F~p~~~~~~~~~~~~~~~~~~Dgg~~~~nnp~~~a~~e~~~l~~~~~~~~~~~~~~~~~~  229 (360)
T d1oxwa_         150 PELDAKMYDISYSTAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYKKM  229 (360)
T ss_dssp             GGGCCBHHHHHHHHHCCTTTSCCEEEEEECTTSCEEEEEEEEGGGGTCSSCHHHHHHHHHHHTTTCGGGTTSTTCCGGGE
T ss_pred             CcccchHHHhhhhhhcCCCCCCCEEEecccCCCCceeEEecccchhhccCchHHHHHHHHHhcccCccccccccCCccce
Confidence            777899999999999999999999987653223334457999999864 8999999998765322222222223455789


Q ss_pred             EEEEecCCCCCCCc-ccchhhhcccccccccccCCCchHHHHHHhhhhhHHHHHHHHHHHhcCCCCcEEEeecCCCCCCC
Q 015720          253 LVISIGTGSKKSEH-KYNAKMASKWGIISWLYDNGDTPLLDCYGRAIGDMVDYHISVVFQALQSEDNYLRIEDDTLQGDV  331 (402)
Q Consensus       253 ~vlSiGTG~~~~~~-~~~~~~~~~~g~~~w~~~~~~~~l~~~~~~a~~~~~~~~~~~l~~~~~~~~~Y~Ri~~~~~~~~~  331 (402)
                      +++|+|||..+... .+......+||+++|+.     ++.++++.++.+++++++..+++....+++|||||++.+....
T Consensus       230 ~~~s~gtg~~~~~~~~~~~~~~~~~g~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~R~~~~~~~~~~  304 (360)
T d1oxwa_         230 LLLSLGTGTTSEFDKTYTAKEAATWTAVHWML-----VIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTT  304 (360)
T ss_dssp             EEEEECCCCBCTTSSCCCHHHHTTCCHHHHHT-----THHHHHHHHHHHHHHHHHHHHHHHTTCGGGEEEECCCCBCGGG
T ss_pred             eeeccccccccccccccchhhhhhcchHhHHH-----HHHHHHHhhhHHHHHHHHHHHHHhcCCCCcEEEEcCCcccccc
Confidence            99999999865432 34556678899999984     6888888888899999999999887778999999986565667


Q ss_pred             cccccccHHHHHHHHHHHHHHhcccccccccCCCccccccCCCCCchHHHHHHHHHHHHHHHhhhhhc
Q 015720          332 TSIDLTTKENFENLVRAGETLLKKPVSRINLDTGLYEPIENGSAGTNEEALKRFAKMLSDERKLRESK  399 (402)
Q Consensus       332 ~~lD~~s~~~i~~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~a~~l~~~r~~r~~~  399 (402)
                      ..|||+++++|++|++.|++|++++....|             ..+|+++|++||+.|++||++|+.+
T Consensus       305 ~~lDd~s~~~l~~l~~~g~~~~~~~~~~~~-------------~~~~~~~L~~~~~~L~~er~~r~~~  359 (360)
T d1oxwa_         305 TEMDDASEANMELLVQVGENLLKKPVSEDN-------------PETYEEALKRFAKLLSDRKKLRANK  359 (360)
T ss_dssp             GCTTCCCHHHHHHHHHHHHHHHTSBSSSSC-------------CCBHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccCCCHHHHHHHHHHHHHHHhhhhhhhh-------------hhHHHHHHHHHHHHHHHHHHHhhhc
Confidence            789999999999999999999998765422             2689999999999999999999875
>d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure