Citrus Sinensis ID: 015729

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-
Protein Sequence
MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHccEEEEEEccccccccHHHHHHHHHcccccccEEEEEEEccccHHHcccHHHHHHHHHHccccEEEEEEccccccccccccccccccEEEEccccccccccccHHHHccHHHHHHHHHcccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEccccccHHHHHHHHHHHccEEEEcccccccccEEEEcccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHcccEEEEEEccccccccHHHHHHHHHHcccccEEEEEEEEccccccccccHHHHHHHHHHccccEEEEEEcHHccccccccccccccEEEEEcccccccccccccHEEccHHHHHHHHHcccccEEEcHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccEEccccccccccEEEEEccccccHHHHHHHHHHHccEEEEcccccccccEEEEEccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mdymyapgknhlfvpgpvhipdQVIRAMNrnnedyrspavpaLTKTLLEDIKKIFKttsgtpflipttgtgawesaltntlspgdrIISFLIGQFSLLWIDQQQRLNFNVDVvesdwgegakLDVLASKLAADTAHTIKAICIVHNetatgvtnNLSKVRKLLDeyrhpalflvdgvssicaidfrmdewgIDVALTGsqkalslptgmgivcaspkaleasktaKSVRVFFDWKDYIkfynlgtfwpytpsIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWglknctqkeewfsDTVTAVIvpshinssEIVRRAWQRYNLSLGlglnkvagkvfrighlghlnelqLLGCLAGVEMIlkdvgypvklgSGVAAASAYlqnnipmipsri
Flexible Loop (DISEMBL)
mdymyapgknhlfvpgpvhIPDQVIRAMNrnnedyrspaVPALTKTLLEDIKKIFkttsgtpflipttgtgAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVhnetatgvtnNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVpshinsseiVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAAsaylqnnipmipsri
Low Complexity Region (SEG)
MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI
Disordered region (IsUnstruct)
********KNHLFVPGPVHIPDQVIRAMN*****YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNI*******
Disordered Region (DISOPRED)
********KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPM*****
Disordered Region (DISEMBL)
MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI
Disordered Region (DISPRO)
**YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMI****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	401	2.2.26 [Sep-21-2011]
Q56YA5	401	Serine--glyoxylate aminot	yes	no	1.0	1.0	0.867	0.0
P55819	402	Serine--glyoxylate aminot	yes	no	0.962	0.960	0.566	1e-127
O08374	405	Serine--glyoxylate aminot	N/A	no	0.952	0.943	0.532	1e-118
Q58369	385	Uncharacterized aminotran	yes	no	0.935	0.974	0.365	4e-60
P16421	383	Soluble hydrogenase 42 kD	N/A	no	0.895	0.937	0.346	3e-59
P14776	384	Soluble hydrogenase, smal	N/A	no	0.945	0.986	0.322	5e-54
O32148	416	Purine catabolism protein	yes	no	0.920	0.887	0.262	9e-35
P21549	392	Serine--pyruvate aminotra	yes	no	0.827	0.846	0.305	3e-31
Q5RDP0	392	Serine--pyruvate aminotra	yes	no	0.830	0.849	0.301	6e-30
Q54GT6	407	Serine--pyruvate aminotra	yes	no	0.830	0.818	0.266	1e-29

>sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana GN=AGT1 PE=1 SV=2

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/401 (86%), Positives = 380/401 (94%)

Query: 1   MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
           MDYMY PG++HLFVPGPV+IP+ VIRAMNRNNEDYRSPA+PALTKTLLED+KKIFKTTSG
Sbjct: 1   MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSG 60

Query: 61  TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
           TPFL PTTGTGAWESALTNTLSPGDRI+SFLIGQFSLLWIDQQ+RLNFNVDVVESDWG+G
Sbjct: 61  TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQG 120

Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
           A L VLASKL+ D  HTIKAICIVHNETATGVTN++S VR LLD Y+HPAL LVDGVSSI
Sbjct: 121 ANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSI 180

Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
           CA+DFRMDEWG+DVALTGSQKALSLPTG+GIVCASPKALEA+KT+KS++VFFDW DY+KF
Sbjct: 181 CALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTSKSLKVFFDWNDYLKF 240

Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
           Y LGT+WPYTPSIQLLYGLRAALDLIFEEGLEN+I RH RLGKATRLAVEAWGLKNCTQK
Sbjct: 241 YKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQK 300

Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL 360
           EEW S+TVTAV+VP HI+ SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG++NELQLL
Sbjct: 301 EEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLL 360

Query: 361 GCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI 401
           GCLAGVEMILKDVGYPV +GSGVAAAS YLQ++IP+IPSRI
Sbjct: 361 GCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 401

Photorespiratory enzyme that catalyzes transamination reactions with multiple substrates.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 5EC: 1

>sp|P55819|SGAA_METEA Serine--glyoxylate aminotransferase OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=sgaA PE=3 SV=2

 Score =  456 bits (1174), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/392 (56%), Positives = 284/392 (72%), Gaps = 6/392 (1%)

Query: 7   PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP 66
           PG+NHLFVPGP +IPD+V+RAM   +ED+RS   P+LTK L ED KK+F +T GT FL P
Sbjct: 7   PGRNHLFVPGPTNIPDRVMRAMMVQSEDHRSVDFPSLTKPLFEDTKKVFGSTEGTIFLFP 66

Query: 67  TTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVL 126
            +GTG WESAL+NTL+ GD++++   GQFS LWID  QRL  +V V E +WG GAK + +
Sbjct: 67  ASGTGIWESALSNTLARGDKVLAARFGQFSHLWIDMAQRLGLDVVVQEEEWGTGAKPEKI 126

Query: 127 ASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR 186
              L AD  H IKA+ +VHNETATGVT+N+  VRK +D   HPAL  VDGVSSI ++ F+
Sbjct: 127 EEALRADKNHEIKAVMVVHNETATGVTSNIGAVRKAIDAAGHPALLFVDGVSSIGSLPFK 186

Query: 187 MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEAS-----KTAKSVRVFFDWKDYIKFY 241
            DEW +D A+ GSQK L LP G+G++C S KAL+A+     +  +  RV+FDW+D  K  
Sbjct: 187 ADEWKVDCAIAGSQKGLMLPAGLGVICVSQKALKAAEGQSGRNDRLARVYFDWEDQKK-Q 245

Query: 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKE 301
           N   ++PYTP + LLYGLR AL  +FEEGLENV  RH  LG+ATR AV AWGLK C +  
Sbjct: 246 NPTGYFPYTPPLPLLYGLREALACLFEEGLENVYHRHAVLGEATRQAVAAWGLKTCAKSP 305

Query: 302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLG 361
           EW SDTVTA++ P  +++++I++ A+ RYNL+LG GL++VAGKVFRIGH+G LNEL LLG
Sbjct: 306 EWNSDTVTAILAPEGVDAAKIIKHAYVRYNLALGAGLSQVAGKVFRIGHVGDLNELSLLG 365

Query: 362 CLAGVEMILKDVGYPVKLGSGVAAASAYLQNN 393
            +AG EM L D G  V  GSGVAAAS+YL+ N
Sbjct: 366 AIAGAEMSLIDNGVKVTPGSGVAAASSYLREN 397

Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) (taxid: 272630)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 5

>sp|O08374|SGAA_HYPME Serine--glyoxylate aminotransferase OS=Hyphomicrobium methylovorum GN=sgaA PE=3 SV=2

 Score =  426 bits (1096), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/385 (53%), Positives = 267/385 (69%), Gaps = 3/385 (0%)

Query: 11  HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGT 70
           HLF+PGP +IPD V  AMN   ED RSP  P  T  L ED+KK FK   G  F+ P++GT
Sbjct: 6   HLFIPGPTNIPDAVRMAMNIPMEDMRSPEFPKFTLPLFEDLKKAFKMKDGRVFIFPSSGT 65

Query: 71  GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKL 130
           GAWESA+ NTL+ GD+++    GQFSLLW+D  +RL   V+V + +WG G  ++  A  L
Sbjct: 66  GAWESAVENTLATGDKVLMSRFGQFSLLWVDMCERLGLKVEVCDEEWGTGVPVEKYADIL 125

Query: 131 AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW 190
           A D  H IKA+ + HNETATGV+++++ VRK LD  +HPAL +VDGVSS+ ++D RM EW
Sbjct: 126 AKDKNHEIKAVFVTHNETATGVSSDVAGVRKALDAAKHPALLMVDGVSSVGSLDMRMGEW 185

Query: 191 GIDVALTGSQKALSLPTGMGIVCASPKALE--ASKTAKSVRVFFDWKDYIKFYNLGTFWP 248
           G+D  ++GSQK   LPTG+GI+  S KAL+   SK  +  R FF ++D IK  + G F+P
Sbjct: 186 GVDCCVSGSQKGFMLPTGLGILAVSQKALDINKSKNGRMNRCFFSFEDMIKTNDQG-FFP 244

Query: 249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308
           YTP+ QLL GLR +LDL+F EGL+NV  RH RL    R AV+AWGLK C ++ +W+SDTV
Sbjct: 245 YTPATQLLRGLRTSLDLLFAEGLDNVFARHTRLASGVRAAVDAWGLKLCAKEPKWYSDTV 304

Query: 309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEM 368
           +A++VP  I+S+ I + A+ RYN S GLGLNKVAGKVFRIGHLG L+E+ + G L   EM
Sbjct: 305 SAILVPEGIDSNAITKTAYYRYNTSFGLGLNKVAGKVFRIGHLGMLDEVMIGGALFAAEM 364

Query: 369 ILKDVGYPVKLGSGVAAASAYLQNN 393
            LKD G  +KLGSG  AA+ Y   N
Sbjct: 365 ALKDNGVNLKLGSGTGAAAEYFSKN 389

Hyphomicrobium methylovorum (taxid: 84)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 5

>sp|Q58369|Y959_METJA Uncharacterized aminotransferase MJ0959 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0959 PE=3 SV=1

 Score =  232 bits (591), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 140/383 (36%), Positives = 215/383 (56%), Gaps = 8/383 (2%)

Query: 9   KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTT 68
           K  L +PGP  +P +V+ AM      +R+     L +  +E +KK+F T + T FLI  +
Sbjct: 7   KKLLMIPGPTMVPPEVLNAMALPVIGHRTKDYSNLLEDTIEKLKKVFITENDT-FLITGS 65

Query: 69  GTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLAS 128
           GT A + A++N +  GD++++ + G F   + +  +        ++ +WG+ A+ +  A 
Sbjct: 66  GTAAMDMAISNIIKRGDKVLNIVTGNFGERFANIVKAYKGEAIRLDVEWGDMAEPE--AV 123

Query: 129 KLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD 188
           K   D    IKA+ +VHNET+TG  N + ++ +++ +Y   AL++VD VSS+      +D
Sbjct: 124 KEILDKYDDIKAVTVVHNETSTGARNPIKEIGEVVKDY--DALYIVDTVSSLGGDYVNVD 181

Query: 189 EWGIDVALTGSQKALSLPTGMGIVCASPKALEA-SKTAKSVRVFFDWKDYIKFYNLGTFW 247
           ++ ID+ +TGSQK L+ P G+  +  S KA E   K    V  + D   Y K+Y      
Sbjct: 182 KFHIDICVTGSQKCLAAPPGLAAITVSEKAWEVIKKNDDKVGFYLDLLAYKKYYEEKKQT 241

Query: 248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT 307
           PYTPS+ L Y L  ALDL+ EEG+EN ++RH RL KATR  +EA G++    KE   S T
Sbjct: 242 PYTPSVNLTYALNVALDLVLEEGIENRVKRHERLAKATRAGLEAMGIE-LFAKERARSVT 300

Query: 308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVE 367
           VT+   P  I  S+       +YN+ +  G   +AGK+FRIGH+G   E ++L  LA VE
Sbjct: 301 VTSAKYPEGIEDSKFRGILSNKYNIVVAGGQKHLAGKIFRIGHMGICGEKEVLATLACVE 360

Query: 368 MILKDVGYPVKLGSGVAAASAYL 390
           + LK++G+ VK  SGV  A   L
Sbjct: 361 LALKELGFEVK-ESGVEVAKEVL 382

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|P16421|DHSS_ANACY Soluble hydrogenase 42 kDa subunit OS=Anabaena cylindrica PE=1 SV=1

 Score =  229 bits (584), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 210/364 (57%), Gaps = 5/364 (1%)

Query: 12  LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
           L +PGP  +P+  + A+ ++   +R+     +   + +++K + +T S    ++  +GTG
Sbjct: 7   LMIPGPTPVPEAALLALAKHPIGHRTSEFSNMMGEVTQNLKWLHQTESDV-LMLNVSGTG 65

Query: 72  AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA 131
           A E+ + N LSPGDRI+    G+F   W++  Q    NV+ + ++WG+    D  A KL 
Sbjct: 66  AVEAGMINFLSPGDRILVGSNGKFGERWVEVGQAFGLNVEAITAEWGQPLDPDKFAQKLQ 125

Query: 132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191
           ADT   IKA+ I H+ET+TGV N+L  +   + E+   AL +VD V+S+ A +  +D  G
Sbjct: 126 ADTNKEIKAVIITHSETSTGVINDLVAINSHVKEHGQ-ALIIVDAVTSLGAYNVPVDALG 184

Query: 192 IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP 251
           +DV  +GSQK   +P G+G V  SPKA EA KTAK  + + D   Y K     T  P+TP
Sbjct: 185 LDVVASGSQKGYMIPPGLGFVSVSPKAWEAYKTAKLPKYYLDLGKYRKATAKNT-TPFTP 243

Query: 252 SIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAV 311
            + L+  L   L ++ +EGLE++  RH R   ATR A++A  L      +E  S  +TAV
Sbjct: 244 PVNLMVALHTTLGMMKKEGLESIFTRHERQKNATRAAMKALNLP-LFAADECASPAITAV 302

Query: 312 IVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK 371
             P  + + +I     +R++++L  G + ++ K+FR+GHLG +++  +L C+A +E++L 
Sbjct: 303 ATPG-MEADKIRSLMKKRFDIALAGGQDHLSNKIFRVGHLGFVSDRDILSCIASLEVVLL 361

Query: 372 DVGY 375
           ++G+
Sbjct: 362 ELGH 365

Soluble hydrogenase catalyzes both production and consumption of hydrogen from suitable artificial electron donors or acceptors. This subunit catalyzes the tritium-exchange activity.

Anabaena cylindrica (taxid: 1165)

EC: 1

EC: .

EC: 1

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|P14776|DHSS_SYNP1 Soluble hydrogenase, small subunit OS=Synechococcus sp. (strain PCC 6716) PE=3 SV=1

 Score =  212 bits (539), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 124/385 (32%), Positives = 208/385 (54%), Gaps = 6/385 (1%)

Query: 9   KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTT 68
           K  L +PGP  +P+ V+ ++ ++   +RS     +   +   IK + +T +    ++  +
Sbjct: 4   KAMLMIPGPTPVPESVLLSLGKHPIGHRSGEFSQIMAAMTAGIKWLHQTQNEV-LILAAS 62

Query: 69  GTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLAS 128
           GTGA E+ + N LS GDR++    G+F   W +         + + + WG+    D   +
Sbjct: 63  GTGAMEAGIINFLSAGDRVVVGCNGKFGDRWGEVCDAYGLTTERISAPWGQPLNPDDFKA 122

Query: 129 KLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD 188
            L        KA+ + H+ET+TGV N+L  + + +  +   AL +VD V+S+ A+   +D
Sbjct: 123 VLDGHRQKPSKAVIVTHSETSTGVINDLEAINRHVKAHGQ-ALIIVDAVTSLGAVSVPID 181

Query: 189 EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP 248
           EWG+DV  +GSQK   +P G+  V  SPKA EA KTA   + + D   Y K     T  P
Sbjct: 182 EWGLDVVGSGSQKGYMIPPGLAFVSVSPKAWEAYKTATLPKFYLDLGKYRKDAAKHTT-P 240

Query: 249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308
           +TP + L + L+ AL+++  EGLE + +RH+RL +ATR A++A  L      +   S  +
Sbjct: 241 FTPPVNLFFALKTALEMMQAEGLEAIFQRHQRLMQATRAAMKALNLP-LYAADSCASPAI 299

Query: 309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEM 368
           TAV  P  + +  I     +R++++L  G + + G++FRIGHLG + +  +L  ++ +E 
Sbjct: 300 TAV-APQGVEAENIRSLMKKRFDIALAGGQDHLKGQIFRIGHLGFVGDRDILAAVSALEA 358

Query: 369 ILKDVGYP-VKLGSGVAAASAYLQN 392
           +L ++GY     G+GVAAAS  L  
Sbjct: 359 VLAELGYTNFTPGAGVAAASRVLST 383

Soluble hydrogenase catalyzes both production and consumption of hydrogen from suitable artificial electron donors or acceptors. This subunit catalyzes the tritium-exchange activity.

Synechococcus sp. (strain PCC 6716) (taxid: 32048)

EC: 1

EC: .

EC: 1

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|O32148|PUCG_BACSU Purine catabolism protein PucG OS=Bacillus subtilis (strain 168) GN=pucG PE=1 SV=1

 Score =  148 bits (373), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 187/408 (45%), Gaps = 39/408 (9%)

Query: 12  LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
           +  PGPV +  +V+R M+        PA   +    +E ++++F+T +   + I  T   
Sbjct: 14  IMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRA 73

Query: 72  AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA 131
             E+ L + + P D ++  + G+F  L  +  +R   NV ++E +WG     + +  ++ 
Sbjct: 74  GIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIK 133

Query: 132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191
                  K + +VH ET+TG  + L  + +        ALF+VD V++I   + ++DEW 
Sbjct: 134 KVKP---KIVAMVHGETSTGRIHPLKAIGEAC--RTEDALFIVDAVATIGGCEVKVDEWK 188

Query: 192 IDVALTGSQKALSLPTGMGI---------VCASPKALEASKTAKSVRVFFDW-----KDY 237
           ID A+ G+QK LS+P+GM           V A+ K +E     ++ R           +Y
Sbjct: 189 IDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNY 248

Query: 238 IKFYNLGTFWP------YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA 291
                L  +W       +T +  +LY LR  + L+ EEGLE   ERHR    A    ++A
Sbjct: 249 FDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKA 308

Query: 292 WGLKNCTQKEEWFSD------TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKV 345
            GL+        F D       VT V +P  I+   +      ++ + +      +AGK+
Sbjct: 309 MGLR-------LFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKI 361

Query: 346 FRIGHLGH-LNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQN 392
           +RIG +G+   +  +L  LAG+E +L      ++ G  + AA    +N
Sbjct: 362 WRIGTMGYSCRKENVLFVLAGLEAVLLRHNAGIEAGKALQAALDVYEN 409

Could encode ureidoglycolase or L-alanine:glyoxylate aminotransferase, or perhaps both activities.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P21549|SPYA_HUMAN Serine--pyruvate aminotransferase OS=Homo sapiens GN=AGXT PE=1 SV=1

 Score =  136 bits (343), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 163/350 (46%), Gaps = 18/350 (5%)

Query: 12  LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
           L  PGP ++P +++ A         S  +  +   + E I+ +F+T +    +I  +G  
Sbjct: 25  LLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHC 84

Query: 72  AWESALTNTLSPGDRIISFLIGQFSLLW----IDQQQRLNFNVDVVESDWGEGAKLDVLA 127
           A E+AL N L PGD   SFL+G   + W    +D  +R+   V  +  D G    L  + 
Sbjct: 85  ALEAALVNVLEPGD---SFLVGANGI-WGQRAVDIGERIGARVHPMTKDPGGHYTLQEVE 140

Query: 128 SKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRM 187
             LA    H    + + H E++TGV   L    +L   Y+   L LVD V+S+      M
Sbjct: 141 EGLAQ---HKPVLLFLTHGESSTGVLQPLDGFGELCHRYK--CLLLVDSVASLGGTPLYM 195

Query: 188 DEWGIDVALTGSQKALSLPTGMGIVCASPKALEA--SKTAKSVRVFFDWKDYIKFYNLGT 245
           D  GID+  +GSQKAL+ P G  ++  S KA +   S+  K    + D K    F+    
Sbjct: 196 DRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDD 255

Query: 246 ---FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEE 302
               + +T  +  LY LR +L LI E+GLEN   +HR         ++A GL+   +   
Sbjct: 256 QPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPA 315

Query: 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352
               TVT V VP+  +  +IV      +++ +  GL    GKV RIG LG
Sbjct: 316 LRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLG 365

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 4

>sp|Q5RDP0|SPYA_PONAB Serine--pyruvate aminotransferase OS=Pongo abelii GN=AGXT PE=2 SV=1

 Score =  132 bits (331), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 106/351 (30%), Positives = 162/351 (46%), Gaps = 18/351 (5%)

Query: 12  LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
           L  PGP ++  +++ A         S  +  +   + E I+ +F+T +    +I  +   
Sbjct: 25  LLGPGPSNLAPRIMAAGGLQIIGPMSKDMYQIMDEIKEGIRYVFQTRNPLTLVISGSAHC 84

Query: 72  AWESALTNTLSPGDRIISFLIGQFSLLW----IDQQQRLNFNVDVVESDWGEGAKLDVLA 127
           A E+AL N L PGD   SFL+G   + W    +D  +R+   V  +  D G    L  + 
Sbjct: 85  ALEAALVNVLEPGD---SFLVGANGI-WGQRAVDIGERMGARVHPMTKDPGGHYTLQEVE 140

Query: 128 SKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRM 187
             LA    H    + + H E++TGV   L    +L   Y+   L LVD V S+      M
Sbjct: 141 EGLAQ---HKPVLLFLTHGESSTGVLQPLDGFGELCHRYK--CLLLVDSVVSVGGTPVYM 195

Query: 188 DEWGIDVALTGSQKALSLPTGMGIVCASPKALEA--SKTAKSVRVFFDWKDYIKFYNLGT 245
           D+ GID+  +GSQKAL+ P G  ++  S KA +   S+  K    + D K    F+    
Sbjct: 196 DQQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDD 255

Query: 246 ---FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEE 302
               + +T  I  LY LR +L LI E+GLEN   +HR         ++A GL+   +   
Sbjct: 256 QPRMYHHTIPIISLYSLRESLALIAEQGLENSWRKHREAAAYLHGRLQALGLQLFVKDPA 315

Query: 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 353
               TVT V VP+  +  +IV      +++ +  GL    GKV RIG LG+
Sbjct: 316 LRLPTVTTVAVPAGYDWRDIVSYVMDHFDIEIMGGLGPPTGKVLRIGLLGY 366

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 4

>sp|Q54GT6|SPYA_DICDI Serine--pyruvate aminotransferase OS=Dictyostelium discoideum GN=agxt PE=3 SV=1

 Score =  131 bits (329), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 169/371 (45%), Gaps = 38/371 (10%)

Query: 12  LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
           L  PGP ++  +V + +  +   Y   +   +    +E ++ +F+T +     I   GT 
Sbjct: 21  LLGPGPSNLHPRVNQQLISSMVGYTDASYYKVMDETMELMRYLFQTDNHFTIPISGAGTA 80

Query: 72  AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA 131
           A E+ ++N + PGD+++  + G FS        R   N+  V+  WG+   L+ + S L 
Sbjct: 81  AMETCVSNLIEPGDKVVCLVSGFFSDRIYQMAVRYGGNILKVDKQWGQWFALEEIESAL- 139

Query: 132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191
               H    + +V  ET+TGV   +  V +L  +Y    L +VD V+++  +   +D+W 
Sbjct: 140 --VQHKPSLLTLVFGETSTGVKQQMEGVGELCKKYN--CLLMVDCVAALGGVPVFVDDWK 195

Query: 192 IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP--- 248
           ID   TG+QK LS P G+  +  S  A     T K+     +W  Y+    LG +W    
Sbjct: 196 IDACYTGTQKCLSGPPGISPLTFSNAACHKIATRKTPVA--NW--YLDCNLLGGYWCPEF 251

Query: 249 --------------------YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLA 288
                               +T    LLY LR AL L+ EEGL+NV +RH+         
Sbjct: 252 NLADGTIAKEEKSTIPKRYHHTTPANLLYSLREALVLLVEEGLDNVWKRHQDAAILLYAG 311

Query: 289 VEAWGLK------NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVA 342
           +E+ GLK      N   ++     ++T V +P  ++   +++     +N+ +  G+   A
Sbjct: 312 LESLGLKPFVPQLNEAPEKGGRLFSLTTVNIPDGVDGKMVMKYLLDNFNIEIAGGIGAFA 371

Query: 343 GKVFRIGHLGH 353
           GKV+RIG +G 
Sbjct: 372 GKVWRIGLMGQ 382

Dual metabolic roles of gluconeogenesis and glyoxylate detoxification.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	401
449444883	401	PREDICTED: serine--glyoxylate aminotrans	1.0	1.0	0.902	0.0
34014758	401	aminotransferase 2 [Cucumis melo]	1.0	1.0	0.897	0.0
148524119	401	aminotransferase 2 [Cucumis sativus]	1.0	1.0	0.895	0.0
148524123	401	aminotransferase 2 [Cucumis sativus]	1.0	1.0	0.895	0.0
148524121	401	aminotransferase 2 [Cucumis melo]	1.0	1.0	0.895	0.0
148524125	401	aminotransferase 2 [Cucumis melo]	1.0	1.0	0.892	0.0
255580601	401	serine-pyruvate aminotransferase, putati	1.0	1.0	0.897	0.0
18032028	401	aminotransferase 1 [Cucumis melo]	1.0	1.0	0.897	0.0
449442569	401	PREDICTED: serine--glyoxylate aminotrans	1.0	1.0	0.900	0.0
224104247	401	predicted protein [Populus trichocarpa]	1.0	1.0	0.895	0.0

>gi|449444883|ref|XP_004140203.1| PREDICTED: serine--glyoxylate aminotransferase-like [Cucumis sativus] gi|449480967|ref|XP_004156042.1| PREDICTED: serine--glyoxylate aminotransferase-like [Cucumis sativus]

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/401 (90%), Positives = 392/401 (97%)

Query: 1   MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
           MDY+Y PG+NHLFVPGPV+IP+QV+RAMNRNNEDYRSPAVPALTKTLLED+KKIFKTTSG
Sbjct: 1   MDYVYGPGRNHLFVPGPVNIPEQVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKTTSG 60

Query: 61  TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
           TPFL PTTGTGAWESALTNTLSPGDRI+SFLIGQFSLLWIDQQQRLNF VDV+ESDWGEG
Sbjct: 61  TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFKVDVIESDWGEG 120

Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
           AKLDVLA+KLAADT HTIKA+CIVHNETATGVTN+LS VR++LDEYRHPALFLVDGVSSI
Sbjct: 121 AKLDVLAAKLAADTDHTIKAVCIVHNETATGVTNDLSLVRRILDEYRHPALFLVDGVSSI 180

Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
           CA+DFRMD+WG+DVALTGSQKALSLPTG+GIVCASP+ALEASKTAKS+RVFFDWKDY+KF
Sbjct: 181 CALDFRMDDWGVDVALTGSQKALSLPTGIGIVCASPRALEASKTAKSLRVFFDWKDYLKF 240

Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
           YNLGT+WPYTPSIQLLYGLRAALDL+FEEGLENVI RH+RLG+ATRLAVEAWGLKNCTQK
Sbjct: 241 YNLGTYWPYTPSIQLLYGLRAALDLVFEEGLENVIARHKRLGQATRLAVEAWGLKNCTQK 300

Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL 360
           EEW SDTVTAV+VP +I+SSEIVRRAW+RYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL
Sbjct: 301 EEWHSDTVTAVLVPPYIDSSEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL 360

Query: 361 GCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI 401
           GCLAGVEMILKDVGYPVKLGSGVAAAS+Y QNNIP+IPSRI
Sbjct: 361 GCLAGVEMILKDVGYPVKLGSGVAAASSYFQNNIPLIPSRI 401

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34014758|gb|AAQ56195.1| aminotransferase 2 [Cucumis melo]

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/401 (89%), Positives = 393/401 (98%)

Query: 1   MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
           MDY+Y PG+NHLFVPGPV+IP+QV+RAMNRNNEDYRSPAVPALTKTLLED+KKIFKTTSG
Sbjct: 1   MDYVYGPGRNHLFVPGPVNIPEQVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKTTSG 60

Query: 61  TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
           TPFL PTTGTGAWESALTNTLSPGDRI+SFLIGQFSLLWIDQQQRLNF VDV+ES+WGEG
Sbjct: 61  TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFKVDVIESEWGEG 120

Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
           AKLDVLA+KLAADT HTIKA+CIVHNETATGVTN+LS VR++LDEYRHPALFLVDGVSSI
Sbjct: 121 AKLDVLAAKLAADTDHTIKAVCIVHNETATGVTNDLSLVRRILDEYRHPALFLVDGVSSI 180

Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
           CA+DFRMD+WG+DVALTGSQKALSLPTG+GIVCASP+ALEASKTAKS+RVFFDWKDY+KF
Sbjct: 181 CALDFRMDDWGVDVALTGSQKALSLPTGIGIVCASPRALEASKTAKSLRVFFDWKDYLKF 240

Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
           YNLGT+WPYTPSIQLLYGLRAALDL+FEEGLENVI RH+RLG+ATRLAVEAWGLKNCTQK
Sbjct: 241 YNLGTYWPYTPSIQLLYGLRAALDLVFEEGLENVIARHKRLGQATRLAVEAWGLKNCTQK 300

Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL 360
           EEW SDTVTAV+VP +I+S+EIVRRAW+RYNLSLGLGLNKVAGKVFRIGHLG+LNELQLL
Sbjct: 301 EEWHSDTVTAVVVPPYIDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLL 360

Query: 361 GCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI 401
           GCLAGVEMILKDVGYPVKLGSGVAAAS+YLQNNIP+IPSRI
Sbjct: 361 GCLAGVEMILKDVGYPVKLGSGVAAASSYLQNNIPLIPSRI 401

Source: Cucumis melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148524119|gb|ABQ81922.1| aminotransferase 2 [Cucumis sativus]

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/401 (89%), Positives = 393/401 (98%)

Query: 1   MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
           MDY+Y PG+NHLFVPGPV+IP+QV+RAMNRNNEDYRSPAVPALTKTLLED+KKIFKT+SG
Sbjct: 1   MDYVYGPGRNHLFVPGPVNIPEQVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKTSSG 60

Query: 61  TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
           TPFL PTTGTGAWESALTNTLSPGDRI+SFLIGQFSLLWIDQQQRLNF VDV+ES+WGEG
Sbjct: 61  TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFKVDVIESEWGEG 120

Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
           AKLDVLA+KLAADT HTIKA+CIVHNETATGVTN+LS VR++LDEYRHPALFLVDGVSSI
Sbjct: 121 AKLDVLAAKLAADTDHTIKAVCIVHNETATGVTNDLSLVRRILDEYRHPALFLVDGVSSI 180

Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
           CA+DFRMD+WG+DVALTGSQKALSLPTG+GIVCASP+ALEASKTAKS+RVFFDWKDY+KF
Sbjct: 181 CALDFRMDDWGVDVALTGSQKALSLPTGIGIVCASPRALEASKTAKSLRVFFDWKDYLKF 240

Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
           YNLGT+WPYTPSIQLLYGLRAALDL+FEEGLENVI RH+RLG+ATRLAVEAWGLKNCTQK
Sbjct: 241 YNLGTYWPYTPSIQLLYGLRAALDLVFEEGLENVIARHKRLGQATRLAVEAWGLKNCTQK 300

Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL 360
           EEW SDTVTAV+VP +I+S+EIVRRAW+RYNLSLGLGLNKVAGKVFRIGHLG+LNELQLL
Sbjct: 301 EEWHSDTVTAVVVPPYIDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLL 360

Query: 361 GCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI 401
           GCLAGVEMILKDVGYPVKLGSGVAAAS+YLQNNIP+IPSRI
Sbjct: 361 GCLAGVEMILKDVGYPVKLGSGVAAASSYLQNNIPLIPSRI 401

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148524123|gb|ABQ81924.1| aminotransferase 2 [Cucumis sativus]

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/401 (89%), Positives = 392/401 (97%)

Query: 1   MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
           MDY+Y PG+NHLFVPGPV+IP+QV+RAMNRNNEDYRSPAVPALTKTLLED+KKIFKTTSG
Sbjct: 1   MDYVYGPGRNHLFVPGPVNIPEQVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKTTSG 60

Query: 61  TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
           TPF  PTTGTGAWESALTNTLSPGDRI+SFLIGQFSLLWIDQQQRLNF VDV+ES+WGEG
Sbjct: 61  TPFSFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFKVDVIESEWGEG 120

Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
           AKLDVLA+KLAADT HTIKA+CIVHNETATGVTN+LS VR++LDEYRHPALFLVDGVSSI
Sbjct: 121 AKLDVLAAKLAADTDHTIKAVCIVHNETATGVTNDLSLVRRILDEYRHPALFLVDGVSSI 180

Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
           CA+DFRMD+WG+DVALTGSQKALSLPTG+GIVCASP+ALEASKTAKS+RVFFDWKDY+KF
Sbjct: 181 CALDFRMDDWGVDVALTGSQKALSLPTGIGIVCASPRALEASKTAKSLRVFFDWKDYLKF 240

Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
           YNLGT+WPYTPSIQLLYGLRAALDL+FEEGLENVI RH+RLG+ATRLAVEAWGLKNCTQK
Sbjct: 241 YNLGTYWPYTPSIQLLYGLRAALDLVFEEGLENVIARHKRLGQATRLAVEAWGLKNCTQK 300

Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL 360
           EEW SDTVTAV+VP +I+S+EIVRRAW+RYNLSLGLGLNKVAGKVFRIGHLG+LNELQLL
Sbjct: 301 EEWHSDTVTAVVVPPYIDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLL 360

Query: 361 GCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI 401
           GCLAGVEMILKDVGYPVKLGSGVAAAS+YLQNNIP+IPSRI
Sbjct: 361 GCLAGVEMILKDVGYPVKLGSGVAAASSYLQNNIPLIPSRI 401

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148524121|gb|ABQ81923.1| aminotransferase 2 [Cucumis melo]

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/401 (89%), Positives = 392/401 (97%)

Query: 1   MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
           MDY+Y PG+NHLFVPGPV+IP+QV+RAMNRNNEDYRSPAVPALTKTLLED+KKIFKTTSG
Sbjct: 1   MDYVYGPGRNHLFVPGPVNIPEQVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKTTSG 60

Query: 61  TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
           TPFL PTTGTGAWESALTNTLSPGDRI+SFLIGQFSLLWIDQQQRLNF VDV+ES+WGEG
Sbjct: 61  TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFKVDVIESEWGEG 120

Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
           AKLDVLA+KLAADT HTIKA+CIVHNETATGVTN+LS VR++LDEYRHPALFLVDGV SI
Sbjct: 121 AKLDVLAAKLAADTDHTIKAVCIVHNETATGVTNDLSLVRRILDEYRHPALFLVDGVPSI 180

Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
           CA+DFRMD+WG+DVALTGSQKALSLPTG+GIVCASP+ALEASKTAKS+RVFFDWKDY+KF
Sbjct: 181 CALDFRMDDWGVDVALTGSQKALSLPTGIGIVCASPRALEASKTAKSLRVFFDWKDYLKF 240

Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
           YNLGT+WPYTPSIQLLYGLRAALDL+FEEGLENVI RH+RLG+ATRLAVEAWGLKNCTQK
Sbjct: 241 YNLGTYWPYTPSIQLLYGLRAALDLVFEEGLENVIARHKRLGQATRLAVEAWGLKNCTQK 300

Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL 360
           EEW SDTVTAV+VP +I+S+EIVRRAW+RYNLSLGLGLNKVAGKVFRIGHLG+LNELQLL
Sbjct: 301 EEWHSDTVTAVVVPPYIDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLL 360

Query: 361 GCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI 401
           GCLAGVEMILKDVGYPVKLGSGVAAAS+YLQNNIP+IPSRI
Sbjct: 361 GCLAGVEMILKDVGYPVKLGSGVAAASSYLQNNIPLIPSRI 401

Source: Cucumis melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148524125|gb|ABQ81925.1| aminotransferase 2 [Cucumis melo]

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/401 (89%), Positives = 392/401 (97%)

Query: 1   MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
           MDY+Y PG+NHLFVPGPV+IP+QV+RAMNRNNEDYRSPAVPALTKTLLED+KKIFKTTSG
Sbjct: 1   MDYVYGPGRNHLFVPGPVNIPEQVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKTTSG 60

Query: 61  TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
           TPFL PTTGTGAWESALTNTLSPGDRI+SFLIGQFSLLWIDQQQRLNF VDV+ES+WGEG
Sbjct: 61  TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFKVDVIESEWGEG 120

Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
           AKLDVLA+KLAADT HTIKA+CIVHNETATGVTN+LS VR++LDEYRHPALFLVDGVSSI
Sbjct: 121 AKLDVLAAKLAADTDHTIKAVCIVHNETATGVTNDLSLVRRILDEYRHPALFLVDGVSSI 180

Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
           CA+DFRMD+WG+DVALTGSQK LSLPTG+GIVCASP+ALEASKTAKS+RVFFDWKDY+KF
Sbjct: 181 CALDFRMDDWGVDVALTGSQKVLSLPTGIGIVCASPRALEASKTAKSLRVFFDWKDYLKF 240

Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
           YNLGT+WPYTPSIQLLYGLRAALDL+FEEGLENVI RH+RLG+ATRLAVEAWGLKNCTQK
Sbjct: 241 YNLGTYWPYTPSIQLLYGLRAALDLVFEEGLENVIARHKRLGQATRLAVEAWGLKNCTQK 300

Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL 360
           EEW SDTVTAV+VP +++S+EIVRRAW+RYNLSLGLGLNKVAGKVFRIGHLG+LNELQLL
Sbjct: 301 EEWHSDTVTAVVVPPYMDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLL 360

Query: 361 GCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI 401
           GCLAGVEMILKDVGYPVKLGSGVAAAS+YLQNNIP+IPSRI
Sbjct: 361 GCLAGVEMILKDVGYPVKLGSGVAAASSYLQNNIPLIPSRI 401

Source: Cucumis melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580601|ref|XP_002531124.1| serine-pyruvate aminotransferase, putative [Ricinus communis] gi|223529288|gb|EEF31258.1| serine-pyruvate aminotransferase, putative [Ricinus communis]

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/401 (89%), Positives = 389/401 (97%)

Query: 1   MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
           MDY+Y PG+NHLFVPGPV+IP+ VIRAMNRNNEDYRSPAVPALTKTLLED+KKIFKTT+G
Sbjct: 1   MDYVYGPGRNHLFVPGPVNIPEPVIRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKTTTG 60

Query: 61  TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
           TPFL PTTGTGAWESALTNTLSPGDR ISFLIGQFSLLWIDQQQRL F+VDVV+S WG+G
Sbjct: 61  TPFLFPTTGTGAWESALTNTLSPGDRTISFLIGQFSLLWIDQQQRLGFDVDVVKSQWGQG 120

Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
           A LD+LASKLAAD+AHTIKA+CIVHNETATGVTN+L+KVRK+LD+YRHPALFLVDGVSSI
Sbjct: 121 ANLDILASKLAADSAHTIKAVCIVHNETATGVTNDLAKVRKILDDYRHPALFLVDGVSSI 180

Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
           CA+DFRMDEWG+DVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDY+KF
Sbjct: 181 CALDFRMDEWGVDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYLKF 240

Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
           Y +GTFWPYTPSIQLLYGLRAALDLIFEEGL+NVIERH RLGKATRLAVEAWGL NCTQK
Sbjct: 241 YKMGTFWPYTPSIQLLYGLRAALDLIFEEGLDNVIERHARLGKATRLAVEAWGLNNCTQK 300

Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL 360
           EEWFSDTVTAV+VP +I+S+EIV+RAW+RYNLSLGLGLNKVAGKVFRIGHLG+LNELQLL
Sbjct: 301 EEWFSDTVTAVLVPPYIDSTEIVKRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLL 360

Query: 361 GCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI 401
           GCLAGVEMILKDVGYPVKLGSGVAAA AYLQNNIP+IPSRI
Sbjct: 361 GCLAGVEMILKDVGYPVKLGSGVAAACAYLQNNIPLIPSRI 401

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18032028|gb|AAL47679.1| aminotransferase 1 [Cucumis melo]

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/401 (89%), Positives = 390/401 (97%)

Query: 1   MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
           MDY+YAPGKNHLFVPGPV+IP+ V+RAMNRNNEDYRSPAVPALTKTLLED+KKIFK+T+G
Sbjct: 1   MDYVYAPGKNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKSTTG 60

Query: 61  TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
           T FLIPTTGTGAWESALTNTLSPGDRI+SFLIGQFSLLWIDQQQRLNFNVDVVESDWG+G
Sbjct: 61  TTFLIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGQG 120

Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
           A LDVL SKLA D  HTIKAICIVHNETATGVTN+LSKVR LLD+Y+HPAL LVDGVSSI
Sbjct: 121 ANLDVLESKLATDGGHTIKAICIVHNETATGVTNDLSKVRFLLDKYKHPALLLVDGVSSI 180

Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
           CA+DFRMDEWG+DVALTGSQKALSLPTG+GI+CASPKALEASKT+KSV+VFFDWKDY+KF
Sbjct: 181 CALDFRMDEWGVDVALTGSQKALSLPTGLGIICASPKALEASKTSKSVKVFFDWKDYLKF 240

Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
           YNLGT+WPYTPSIQLLYGLRAALDL+FEEGL+NVI RH RLGKATRLAVEAWGLKNCTQK
Sbjct: 241 YNLGTYWPYTPSIQLLYGLRAALDLLFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQK 300

Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL 360
           EEWFSDTVTAV+VPS+I+S+EIVRRAW+RYNLSLGLGLNKVAGKVFRIGHLG+LNELQLL
Sbjct: 301 EEWFSDTVTAVLVPSYIDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLL 360

Query: 361 GCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI 401
           GCLAGVEM+LKDVGYPVKLGSGVAAASAYLQNNIP+IPSRI
Sbjct: 361 GCLAGVEMVLKDVGYPVKLGSGVAAASAYLQNNIPLIPSRI 401

Source: Cucumis melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442569|ref|XP_004139054.1| PREDICTED: serine--glyoxylate aminotransferase-like [Cucumis sativus] gi|449518141|ref|XP_004166102.1| PREDICTED: serine--glyoxylate aminotransferase-like [Cucumis sativus]

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/401 (90%), Positives = 390/401 (97%)

Query: 1   MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
           MDY+YAPGKNHLFVPGPV+IP+ V+RAMNRNNEDYRSPAVPALTKTLLED+KKIFK+T+G
Sbjct: 1   MDYVYAPGKNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKSTAG 60

Query: 61  TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
           T FLIPTTGTGAWESALTNTLSPGDRI+SFLIGQFSLLWIDQQQRLNFNVDVVESDWG+G
Sbjct: 61  TTFLIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGQG 120

Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
           A LDVL SKLAAD   TIKAICIVHNETATGVTN+LSKVR LLD+Y+HPAL LVDGVSSI
Sbjct: 121 ANLDVLESKLAADGGQTIKAICIVHNETATGVTNDLSKVRFLLDKYKHPALLLVDGVSSI 180

Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
           CA+DFRMDEWG+DVALTGSQKALSLPTG+GI+CASPKALEASKT+KSV+VFFDWKDY+KF
Sbjct: 181 CALDFRMDEWGVDVALTGSQKALSLPTGLGIICASPKALEASKTSKSVKVFFDWKDYLKF 240

Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
           YNLGT+WPYTPSIQLLYGLRAALDL+FEEGL+NVI RH RLGKATRLAVEAWGLKNCTQK
Sbjct: 241 YNLGTYWPYTPSIQLLYGLRAALDLLFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQK 300

Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL 360
           EEWFSDTVTAV+VPS+I+S+EIVRRAW+RYNLSLGLGLNKVAGKVFRIGHLG+LNELQLL
Sbjct: 301 EEWFSDTVTAVLVPSYIDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLL 360

Query: 361 GCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI 401
           GCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIP+IPSRI
Sbjct: 361 GCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPLIPSRI 401

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104247|ref|XP_002313371.1| predicted protein [Populus trichocarpa] gi|222849779|gb|EEE87326.1| predicted protein [Populus trichocarpa]

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/401 (89%), Positives = 384/401 (95%)

Query: 1   MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
           MDY Y PG+NHLFVPGPV+IP+ VIRAMNRNNEDYRSPAVPA+TKTLLED+KKIFKTTSG
Sbjct: 1   MDYFYGPGRNHLFVPGPVNIPEPVIRAMNRNNEDYRSPAVPAMTKTLLEDVKKIFKTTSG 60

Query: 61  TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
            PFLIPTTGTGAWESALTNTLSPGDR +SFLIGQFSLLWIDQQQRL FNVDVVESDWG+G
Sbjct: 61  IPFLIPTTGTGAWESALTNTLSPGDRTVSFLIGQFSLLWIDQQQRLGFNVDVVESDWGQG 120

Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
           A LD+LASKLA DTAHTIKA+CIVHNETATGVTNNL+KVRK+LD+Y HPALFLVDGVSSI
Sbjct: 121 ANLDILASKLAEDTAHTIKAVCIVHNETATGVTNNLAKVRKILDDYSHPALFLVDGVSSI 180

Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
           CA+DFRMDEWG+DVALTGSQKALSLPTGMGIVCASPKA+EASKTAKSVRVFFDWKDY+KF
Sbjct: 181 CALDFRMDEWGVDVALTGSQKALSLPTGMGIVCASPKAIEASKTAKSVRVFFDWKDYLKF 240

Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
           YNLGTFWPYTPSIQLLYGLRAALDL+F EGLENV ERH RLGKATRLAVEAWGLKNCTQK
Sbjct: 241 YNLGTFWPYTPSIQLLYGLRAALDLLFAEGLENVFERHARLGKATRLAVEAWGLKNCTQK 300

Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL 360
           EEWFSDTVTAV+VP +I+S+EIVRR W+RYNLSLGLGLNKVAGKVFRIGHLG+LNELQLL
Sbjct: 301 EEWFSDTVTAVVVPPYIDSAEIVRRGWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLL 360

Query: 361 GCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI 401
           GCLAGVEMILKDVGYPVKLGSGVAAA AYLQNN P+I SR+
Sbjct: 361 GCLAGVEMILKDVGYPVKLGSGVAAACAYLQNNTPLIASRV 401

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	401
TAIR|locus:2041649	401	AGT "alanine:glyoxylate aminot	1.0	1.0	0.867	8.3e-193
TIGR_CMR|SPO_A0144	396	SPO_A0144 "serine--glyoxylate	0.957	0.969	0.459	3.1e-90
TIGR_CMR|CHY_2699	382	CHY_2699 "soluble hydrogenase,	0.917	0.963	0.380	4.1e-65
TIGR_CMR|SPO_3029	402	SPO_3029 "serine--glyoxylate t	0.922	0.920	0.357	4.9e-53
TIGR_CMR|DET_0600	362	DET_0600 "soluble hydrogenase,	0.892	0.988	0.315	2e-49
TIGR_CMR|GSU_3260	357	GSU_3260 "phosphoserine aminot	0.877	0.985	0.302	1.6e-38
UNIPROTKB|Q8E9E1	377	agxT "Serine-pyruvate aminotra	0.900	0.957	0.276	9.2e-36
TIGR_CMR|SO_4343	377	SO_4343 "aminotransferase, cla	0.900	0.957	0.276	9.2e-36
UNIPROTKB|Q482V2	373	CPS_2190 "Aminotransferase, cl	0.900	0.967	0.276	5.1e-35
TIGR_CMR|CPS_2190	373	CPS_2190 "aminotransferase, cl	0.900	0.967	0.276	5.1e-35

TAIR|locus:2041649 AGT "alanine:glyoxylate aminotransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1868 (662.6 bits), Expect = 8.3e-193, P = 8.3e-193
 Identities = 348/401 (86%), Positives = 380/401 (94%)

Query:     1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
             MDYMY PG++HLFVPGPV+IP+ VIRAMNRNNEDYRSPA+PALTKTLLED+KKIFKTTSG
Sbjct:     1 MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSG 60

Query:    61 TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
             TPFL PTTGTGAWESALTNTLSPGDRI+SFLIGQFSLLWIDQQ+RLNFNVDVVESDWG+G
Sbjct:    61 TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQG 120

Query:   121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
             A L VLASKL+ D  HTIKAICIVHNETATGVTN++S VR LLD Y+HPAL LVDGVSSI
Sbjct:   121 ANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSI 180

Query:   181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
             CA+DFRMDEWG+DVALTGSQKALSLPTG+GIVCASPKALEA+KT+KS++VFFDW DY+KF
Sbjct:   181 CALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTSKSLKVFFDWNDYLKF 240

Query:   241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
             Y LGT+WPYTPSIQLLYGLRAALDLIFEEGLEN+I RH RLGKATRLAVEAWGLKNCTQK
Sbjct:   241 YKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQK 300

Query:   301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL 360
             EEW S+TVTAV+VP HI+ SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG++NELQLL
Sbjct:   301 EEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLL 360

Query:   361 GCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI 401
             GCLAGVEMILKDVGYPV +GSGVAAAS YLQ++IP+IPSRI
Sbjct:   361 GCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 401

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0004760 "serine-pyruvate transaminase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IDA

GO:0009853 "photorespiration" evidence=RCA;NAS

GO:0050281 "serine-glyoxylate transaminase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TIGR_CMR|SPO_A0144 SPO_A0144 "serine--glyoxylate transaminase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 177/385 (45%), Positives = 246/385 (63%)

Query:     9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTT 68
             +N +F+PGP +IP+ + +A +    D+RSP    +       ++ + K+ +   F+ P+T
Sbjct:     4 QNPVFIPGPTNIPESLRKACDMPTIDHRSPLFGQILHPARAGVRAVLKSETAEIFIFPST 63

Query:    69 GTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLAS 128
             GTG WE+ALTNTLS GD +++   G FS  WID  QR    V+VVE+ WGEG   D    
Sbjct:    64 GTGGWETALTNTLSAGDGVLAARNGMFSHRWIDMCQRHGLAVEVVETPWGEGLPADRYEE 123

Query:   129 KLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD 188
              LAADT H IKA+   HNETATGV ++++ VR+ LD+  HPAL  VDGVSSI ++DFR D
Sbjct:   124 ILAADTHHRIKAVLATHNETATGVRSDIAAVRRALDKAGHPALLFVDGVSSIGSMDFRFD 183

Query:   189 EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP 248
             EW +DVA+TGSQK   LP G+ IV  S KA+EA+ T    R FFD  D  + Y     +P
Sbjct:   184 EWRVDVAVTGSQKGFMLPAGLAIVGFSAKAMEATATGTLPRTFFDVHDMARGY-ANNAYP 242

Query:   249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308
             YTP++ L+ GL  A  ++ +EGLENV  RH R+ +  R AV AWGL+ C    + +SDTV
Sbjct:   243 YTPAVGLMNGLNQACRMLLDEGLENVFARHHRIAEGVRAAVHAWGLELCAASPDLYSDTV 302

Query:   309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEM 368
             +A+  P   N+++IV  A  +Y ++ G+GL +VAGKVFRIGHLG L ++  L  +A  EM
Sbjct:   303 SAIRTPEGFNATDIVTHAASKYGVAFGVGLGEVAGKVFRIGHLGSLTDVMTLSGIATAEM 362

Query:   369 ILKDVGYPVKLGSGVAAASAYLQNN 393
              + D+G  + LGSGVAAA  Y +++
Sbjct:   363 CMADLGLDIGLGSGVAAAQEYFRSH 387

GO:0009069 "serine family amino acid metabolic process" evidence=ISS

GO:0050281 "serine-glyoxylate transaminase activity" evidence=ISS

TIGR_CMR|CHY_2699 CHY_2699 "soluble hydrogenase, 42 kDa subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 145/381 (38%), Positives = 225/381 (59%)

Query:     9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTT 68
             K +L +PGP  IP +V  AM+R    +RS     L + ++  +K++FKT +   F++  +
Sbjct:     3 KKYLMIPGPTPIPPEVTLAMSRPMIGHRSGDFAKLHERVVAKLKQVFKTQNDI-FILTNS 61

Query:    69 GTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLAS 128
             GTG  E A+ N ++PGD +++   G F   +    +     VD+V+  WG    L V+  
Sbjct:    62 GTGGMEMAVANVVNPGDEVLALSTGNFGERFAKIAKEYGAKVDMVDFGWGNAVDLAVVEE 121

Query:   129 KLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD 188
             KL  +  +  KA+   HNET+TGV N+++ +  L   +R  A+ +VD VSS+  ++F  D
Sbjct:   122 KLRQNPNY--KAVLATHNETSTGVKNDIAGIAALTKNHR--AVLIVDAVSSLGGMEFDTD 177

Query:   189 EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW---KDYIKFYNLGT 245
              WG+DV +TGSQKAL LP G+  +  S KALEA++  K+ + +F     K  +  +N   
Sbjct:   178 GWGVDVVVTGSQKALMLPPGLAFISFSQKALEAAQDNKNPKFYFSLPAAKKALAEWNTA- 236

Query:   246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS 305
                YTP++ L +GL AALDLI EEGL+ VI+RH+ L KA R  V+A GLK     EE  S
Sbjct:   237 ---YTPAVSLFFGLEAALDLILEEGLDKVIKRHKLLAKACREGVKALGLK-LFPAEENAS 292

Query:   306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAG 365
             DTVTAV      +  ++ +    +Y ++   G   + GK+FRIGH+G++++L ++  +  
Sbjct:   293 DTVTAVAGDDRYDPEQLRKVLRTKYGVTFAGGQKDLKGKIFRIGHMGYVDKLDIIVAIGA 352

Query:   366 VEMILKDVGYPVKLGSGVAAA 386
             +EM LK++GYPV+LG+GV  A
Sbjct:   353 LEMALKEIGYPVELGAGVKKA 373

GO:0016695 "oxidoreductase activity, acting on hydrogen as donor" evidence=ISS

TIGR_CMR|SPO_3029 SPO_3029 "serine--glyoxylate transaminase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 143/400 (35%), Positives = 218/400 (54%)

Query:     6 APGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLI 65
             A G+ +L +PGP  +PD V+RAM+R   +  +  +  +   L+ D++++ +T       I
Sbjct:     8 AQGRGYLAIPGPSVMPDAVLRAMHRAAPNIYAGELVDMMPGLMADLRRVVRTAHHATIYI 67

Query:    66 PTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDV 125
                G GAWE+AL+N ++PG+ ++    G+F+  W +  + L     V+  D+G+ A  D+
Sbjct:    68 -CNGHGAWEAALSNVIAPGEVVLVPASGRFAHGWAEMAEGLGAECQVI--DFGKSAPWDM 124

Query:   126 --LASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI-CA 182
               +A  L ADTAH IKA+  VH +T++ + N+++ +R +LD   HPAL + D ++S+ C 
Sbjct:   125 DRIAEALKADTAHRIKAVLAVHVDTSSSIRNDIAGLRAVLDALGHPALLMADCIASLGCD 184

Query:   183 IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYN 242
             + F MD WG+DV +T SQK L +P G+G V  + +A  A+K A   RV   W D++   N
Sbjct:   185 V-FEMDGWGVDVTVTASQKGLMVPPGVGFVFFNERA--AAKRASMPRVSRYW-DWVPRAN 240

Query:   243 LGTFWPY---TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG-----L 294
                F+ Y   T     LYGLR ALD+I  EG+E+V  RH  L +A   A   W      +
Sbjct:   241 PTDFYQYFDGTAPTHHLYGLRTALDMIHAEGIEHVWARHAVLARAIWAACSVWAEGGDLV 300

Query:   295 KNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNL--SLGLGLNKVA-G-----KVF 346
              N        S  VTA+ + S   ++    R W   NL  +LG+GL   A G     K F
Sbjct:   301 LNVADPAHR-SHAVTALRLDSGKGTA---LRQWTETNLGLTLGIGLGMAAPGDPAYDKFF 356

Query:   347 RIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAA 386
             R+GH+GHLN   ++G L GVE  L+ +  P   G+  AAA
Sbjct:   357 RLGHMGHLNGQMVMGLLGGVEAGLRALDVPCGKGALEAAA 396

GO:0009069 "serine family amino acid metabolic process" evidence=ISS

GO:0050281 "serine-glyoxylate transaminase activity" evidence=ISS

TIGR_CMR|DET_0600 DET_0600 "soluble hydrogenase, tritium exchange subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 115/365 (31%), Positives = 200/365 (54%)

Query:    11 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGT 70
             +L +PGP   P++V+ AM +   ++R P + A+ K + E +K  F+T +    ++  +GT
Sbjct:     3 NLRIPGPTPCPEEVLTAMGQQMINHRGPEMAAIMKEVAEKLKYFFQTKNDV-LVLTGSGT 61

Query:    71 GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKL 130
             G  E+A  N LSPG+ ++S  IG F   +          +  +  + G+ A    L  K 
Sbjct:    62 GGLEAAAVNFLSPGETVLSVSIGVFGERFAKIASIFGAKIIALNFEHGKAAD-PALVKKA 120

Query:   131 AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW 190
              A+    IKA+ I HNET+TG+TN+L  +  ++       L +VD +SS+ +ID  +DEW
Sbjct:   121 LAEHPE-IKAVLITHNETSTGITNDLKSLASVVKGAGK--LLMVDAISSLSSIDLPVDEW 177

Query:   191 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250
             G DV ++GSQK   +P G+  +  SP A +A+  +K  R ++D   +      G   P+T
Sbjct:   178 GCDVVVSGSQKGWMVPPGLAFISVSPDAWKANAESKMPRFYWDLAKHKASIEKGQT-PWT 236

Query:   251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA 310
             P + ++  L  AL ++ +EG++N+ +RH+++   TR  V+  GL     +E++ S+TVTA
Sbjct:   237 PCVSVIVALHKALAMMEKEGMQNIFKRHQKIADFTRKGVKELGL-TLLAEEKYASNTVTA 295

Query:   311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL 370
             V+    ++  ++++   + YN  L  G   + GK+FRIGHLG + E  +   L  +++ L
Sbjct:   296 VLATEGLDPKKLLKVMREEYNTVLAGGQGPLEGKIFRIGHLGWVTENDIKVTLDNLKLAL 355

Query:   371 KDVGY 375
                G+
Sbjct:   356 PKAGF 360

GO:0008901 "ferredoxin hydrogenase activity" evidence=ISS

GO:0009055 "electron carrier activity" evidence=ISS

GO:0009375 "ferredoxin hydrogenase complex" evidence=ISS

TIGR_CMR|GSU_3260 GSU_3260 "phosphoserine aminotransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 110/364 (30%), Positives = 181/364 (49%)

Query:    12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
             LF+PGPV +  ++++AM      +R P   AL   +   +K++   T G  FL  ++  G
Sbjct:     5 LFIPGPVDVHPEILQAMASPMIGHRMPEYAALHGRVTAGLKRVL-ATDGRVFLATSSAFG 63

Query:    72 AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA 131
               E A+ N ++   R ++F  G FS  W D  +R     D V+ +WG+    +++   LA
Sbjct:    64 VMEGAVRNLVAK--RCVNFCNGAFSDKWHDVTKRCGKEADAVKVEWGKPITPEIVDQALA 121

Query:   132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191
                     AI ++HNET+TGV + L ++ ++L  Y    + ++D VSS+ A+   +DE G
Sbjct:   122 TGK---YDAITLIHNETSTGVMSPLPEIARVLRNYPD-VVSIIDTVSSMSALPVPVDELG 177

Query:   192 IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP 251
             ID  + G QKA +LP G+ +  AS KAL  ++T +    +FD+ ++ +  +     P TP
Sbjct:   178 IDCCIFGVQKAFALPPGLAVFTASDKALARARTVEGRGYYFDFLEF-EANDEKNNTPSTP 236

Query:   252 SIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAV 311
              I  +Y +   L+  F EGLE    RHR+L    R  V   G       E + S T+T  
Sbjct:   237 CISHIYAMDRQLERFFAEGLEQRWARHRQLAGMVREWVTDRGF-GFFADEPYRSVTLTCA 295

Query:   312 IVPSHINSSEIVRRAWQR-YNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL 370
             +     + + + +   +R Y    G G  K+ GK FR+ H+G +    L   LA  +  L
Sbjct:   296 LNTRDTDLARLKKMLGERGYAFDDGYG--KIKGKTFRVAHMGDMQRTDLEEFLATADECL 353

Query:   371 KDVG 374
              ++G
Sbjct:   354 AELG 357

GO:0004648 "O-phospho-L-serine:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0006564 "L-serine biosynthetic process" evidence=ISS

UNIPROTKB|Q8E9E1 agxT "Serine-pyruvate aminotransferase AgxT" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 103/372 (27%), Positives = 179/372 (48%)

Query:     5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFL 64
             + P +  L  PGP  +  +V+ A  R    +  P   ++   L   I+  F+T +     
Sbjct:    10 FNPPRRILMGPGPSDVYPEVLAAQARPTVGHLDPLFVSMMDELKSLIQYAFQTKNEMTMA 69

Query:    65 IPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLD 124
             +   G+   E+   N + PG+++I    G F        +R+     +V+++WG    +D
Sbjct:    70 VSAPGSAGMETCFVNLVEPGEKVIVCRNGVFGERMRQNVERVGAIAVLVDNEWG--TPVD 127

Query:   125 VLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID 184
              +A + A       K +  VH ET+TG  ++   +  L  +Y    L +VD V+S+  ++
Sbjct:   128 PVAVEAALKAHPDAKFLAFVHAETSTGALSDAKTLCALAKQYG--CLSIVDAVTSLGGVE 185

Query:   185 FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS-VRVFFDWKDYIKFY-- 241
              R+DEWGID   +GSQK LS   G+  V  SP A+E  K  K+ V+ +F  +  +  Y  
Sbjct:   186 LRVDEWGIDAIYSGSQKCLSCVPGLSPVSFSPAAVEKLKNRKTPVQSWFLDQSLVMAYWT 245

Query:   242 NLG--TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQ 299
             + G    + +T  +  LY +  +L ++  EGLEN  +RH+ +    R  +E  GLK    
Sbjct:   246 SAGGKRSYHHTAPVNALYAMHESLRILAAEGLENAWKRHQDMHLVLRAGLEKLGLKFVVA 305

Query:   300 KEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQL 359
             +       + A+ +P  ++ + +  R  + YNL +G GL  +AGK +RIG +G     + 
Sbjct:   306 EASRLPQ-LNAIYIPEGVDDAAVRARLLKDYNLEIGAGLGALAGKAWRIGLMGFGARREN 364

Query:   360 LG-CLAGVEMIL 370
             +  CL  +E +L
Sbjct:   365 VALCLRALEEVL 376

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_4343 SO_4343 "aminotransferase, class V" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 103/372 (27%), Positives = 179/372 (48%)

Query:     5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFL 64
             + P +  L  PGP  +  +V+ A  R    +  P   ++   L   I+  F+T +     
Sbjct:    10 FNPPRRILMGPGPSDVYPEVLAAQARPTVGHLDPLFVSMMDELKSLIQYAFQTKNEMTMA 69

Query:    65 IPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLD 124
             +   G+   E+   N + PG+++I    G F        +R+     +V+++WG    +D
Sbjct:    70 VSAPGSAGMETCFVNLVEPGEKVIVCRNGVFGERMRQNVERVGAIAVLVDNEWG--TPVD 127

Query:   125 VLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID 184
              +A + A       K +  VH ET+TG  ++   +  L  +Y    L +VD V+S+  ++
Sbjct:   128 PVAVEAALKAHPDAKFLAFVHAETSTGALSDAKTLCALAKQYG--CLSIVDAVTSLGGVE 185

Query:   185 FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS-VRVFFDWKDYIKFY-- 241
              R+DEWGID   +GSQK LS   G+  V  SP A+E  K  K+ V+ +F  +  +  Y  
Sbjct:   186 LRVDEWGIDAIYSGSQKCLSCVPGLSPVSFSPAAVEKLKNRKTPVQSWFLDQSLVMAYWT 245

Query:   242 NLG--TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQ 299
             + G    + +T  +  LY +  +L ++  EGLEN  +RH+ +    R  +E  GLK    
Sbjct:   246 SAGGKRSYHHTAPVNALYAMHESLRILAAEGLENAWKRHQDMHLVLRAGLEKLGLKFVVA 305

Query:   300 KEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQL 359
             +       + A+ +P  ++ + +  R  + YNL +G GL  +AGK +RIG +G     + 
Sbjct:   306 EASRLPQ-LNAIYIPEGVDDAAVRARLLKDYNLEIGAGLGALAGKAWRIGLMGFGARREN 364

Query:   360 LG-CLAGVEMIL 370
             +  CL  +E +L
Sbjct:   365 VALCLRALEEVL 376

GO:0008150 "biological_process" evidence=ND

GO:0008483 "transaminase activity" evidence=ISS

UNIPROTKB|Q482V2 CPS_2190 "Aminotransferase, class V" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 103/373 (27%), Positives = 174/373 (46%)

Query:     5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFL 64
             + P +  L  PGP  +  +V+ A+ R    +  P   A+   + E ++  F+TT+     
Sbjct:     6 FFPPQRTLMGPGPSDVSPRVLSALARPTIGHLDPCFVAMMDEVKELLQYAFQTTNKFTMA 65

Query:    65 IPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLD 124
             +   G+   E+   N ++P D ++  + G F +  I+   R+   + VVE +WG      
Sbjct:    66 VSAPGSAGMEACFVNLITPDDTVVVCVNGVFGMRMIENVNRIGAKLVVVEGEWGRAVDPQ 125

Query:   125 VLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID 184
              L + L  +       +  VH ET+TG  ++   +  +     H  L +VD V+S+  ++
Sbjct:   126 ALEASLKENPQANF--VAFVHAETSTGALSDAKTLCAIAKN--HDCLTIVDAVTSLGGVE 181

Query:   185 FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK-SVRVFFDWKDYIKFYNL 243
              R+DEW ID   +GSQK LS   G+  V  S +A E  +    +V+ +F  +  +  Y  
Sbjct:   182 LRVDEWQIDAVYSGSQKCLSCVPGLSPVSFSDRAAEVIQNRGIAVQSWFLDQSLVMGYWS 241

Query:   244 GT---FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
             G     + +T  +  LY L  +L ++  EGLEN   RH+ +       +   GL      
Sbjct:   242 GEGKRSYHHTAPVNSLYALHESLVMLQNEGLENSWARHKTMHDKLSTGLAELGLDFIVPA 301

Query:   301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHL--NELQ 358
             +E     + AV +P  I+ +++       YNL +G GL   AGK +RIG +G+   NE  
Sbjct:   302 DERLPQ-LNAVYIPEGIDDAKVRNFLLNEYNLEIGAGLGAFAGKAWRIGLMGYAARNENV 360

Query:   359 LLGCLAGVEMILK 371
              L CLA ++  LK
Sbjct:   361 TL-CLAALKEALK 372

GO:0008150 "biological_process" evidence=ND

GO:0008483 "transaminase activity" evidence=ISS

TIGR_CMR|CPS_2190 CPS_2190 "aminotransferase, class V" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 103/373 (27%), Positives = 174/373 (46%)

Query:     5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFL 64
             + P +  L  PGP  +  +V+ A+ R    +  P   A+   + E ++  F+TT+     
Sbjct:     6 FFPPQRTLMGPGPSDVSPRVLSALARPTIGHLDPCFVAMMDEVKELLQYAFQTTNKFTMA 65

Query:    65 IPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLD 124
             +   G+   E+   N ++P D ++  + G F +  I+   R+   + VVE +WG      
Sbjct:    66 VSAPGSAGMEACFVNLITPDDTVVVCVNGVFGMRMIENVNRIGAKLVVVEGEWGRAVDPQ 125

Query:   125 VLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID 184
              L + L  +       +  VH ET+TG  ++   +  +     H  L +VD V+S+  ++
Sbjct:   126 ALEASLKENPQANF--VAFVHAETSTGALSDAKTLCAIAKN--HDCLTIVDAVTSLGGVE 181

Query:   185 FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK-SVRVFFDWKDYIKFYNL 243
              R+DEW ID   +GSQK LS   G+  V  S +A E  +    +V+ +F  +  +  Y  
Sbjct:   182 LRVDEWQIDAVYSGSQKCLSCVPGLSPVSFSDRAAEVIQNRGIAVQSWFLDQSLVMGYWS 241

Query:   244 GT---FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
             G     + +T  +  LY L  +L ++  EGLEN   RH+ +       +   GL      
Sbjct:   242 GEGKRSYHHTAPVNSLYALHESLVMLQNEGLENSWARHKTMHDKLSTGLAELGLDFIVPA 301

Query:   301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHL--NELQ 358
             +E     + AV +P  I+ +++       YNL +G GL   AGK +RIG +G+   NE  
Sbjct:   302 DERLPQ-LNAVYIPEGIDDAKVRNFLLNEYNLEIGAGLGAFAGKAWRIGLMGYAARNENV 360

Query:   359 LLGCLAGVEMILK 371
              L CLA ++  LK
Sbjct:   361 TL-CLAALKEALK 372

GO:0008150 "biological_process" evidence=ND

GO:0008483 "transaminase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O08374	SGAA_HYPME	2, ., 6, ., 1, ., 4, 5	0.5324	0.9526	0.9432	N/A	no
Q5RDP0	SPYA_PONAB	2, ., 6, ., 1, ., 4, 4	0.3019	0.8304	0.8494	yes	no
P55819	SGAA_METEA	2, ., 6, ., 1, ., 4, 5	0.5663	0.9625	0.9601	yes	no
P21549	SPYA_HUMAN	2, ., 6, ., 1, ., 4, 4	0.3057	0.8279	0.8469	yes	no
Q58369	Y959_METJA	2, ., 6, ., 1, ., -	0.3655	0.9351	0.9740	yes	no
Q56YA5	SGAT_ARATH	2, ., 6, ., 1, ., 5, 1	0.8678	1.0	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	0.998
4th Layer	2.6.1.44	0.994
4th Layer	2.6.1.51	0.994
4th Layer	2.6.1.45	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	401
PLN02409	401	PLN02409, PLN02409, serine--glyoxylate aminotransa	0.0
cd06451	356	cd06451, AGAT_like, Alanine-glyoxylate aminotransf	1e-170
COG0075	383	COG0075, COG0075, Serine-pyruvate aminotransferase	1e-140
TIGR03301	355	TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate amin	1e-30
pfam00266	370	pfam00266, Aminotran_5, Aminotransferase class-V	2e-25
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	4e-17
TIGR02326	363	TIGR02326, transamin_PhnW, 2-aminoethylphosphonate	6e-15
PRK13479	368	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruv	4e-13
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	2e-09
TIGR01979	403	TIGR01979, sufS, cysteine desulfurases, SufSfamily	1e-07
cd06453	373	cd06453, SufS_like, Cysteine desulfurase (SufS)-li	6e-07
TIGR01977	376	TIGR01977, am_tr_V_EF2568, cysteine desulfurase fa	2e-06
PRK03080	378	PRK03080, PRK03080, phosphoserine aminotransferase	1e-05
COG1932	365	COG1932, SerC, Phosphoserine aminotransferase [Coe	3e-05

>gnl|CDD|178031 PLN02409, PLN02409, serine--glyoxylate aminotransaminase

 Score =  786 bits (2031), Expect = 0.0
 Identities = 327/401 (81%), Positives = 365/401 (91%)

Query: 1   MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
           MDY+YAPG+NHLFVPGPV+IP++V+RAMNR NED+RSPA PALTK LLED+K IFKT SG
Sbjct: 1   MDYVYAPGRNHLFVPGPVNIPERVLRAMNRPNEDHRSPAFPALTKELLEDVKYIFKTKSG 60

Query: 61  TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
           TPF+ PTTGTGAWESALTNTLSPGD+++SF IGQFSLLWIDQ QRLNF+VDVVES WG+G
Sbjct: 61  TPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQG 120

Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
           A LD+L SKL  DT H IKA+C+VHNET+TGVTN+L+ VRKLLD  +HPAL LVDGVSSI
Sbjct: 121 ADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSI 180

Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF 240
            A+DFRMDEWG+DVALTGSQKALSLPTG+GIVCASPKALEASKTAKS RVFFDW DY+KF
Sbjct: 181 GALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADYLKF 240

Query: 241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK 300
           Y LGT+WPYTPSIQLLYGLRAALDLIFEEGLENVI RH RLG+ATRLAVEAWGLK CT+K
Sbjct: 241 YKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLKLCTKK 300

Query: 301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL 360
            EW SDTVTAV+VP  I+S+EIV+ AW++YNLSLGLGLNKVAGKVFRIGHLG++NELQLL
Sbjct: 301 PEWRSDTVTAVVVPEGIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLL 360

Query: 361 GCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI 401
           G LAGVEM+LKDVGYPVKLGSGVAAA AYLQ   P+IPSRI
Sbjct: 361 GALAGVEMVLKDVGYPVKLGSGVAAAQAYLQKTTPLIPSRI 401

Length = 401

>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT) family

 Score =  479 bits (1234), Expect = e-170
 Identities = 168/362 (46%), Positives = 223/362 (61%), Gaps = 7/362 (1%)

Query: 11  HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGT 70
            L +PGP ++P +V++AMNR    +RSP   AL   +LE ++ +F+T +G  FL+  +GT
Sbjct: 1   LLLIPGPSNVPPRVLKAMNRPMLGHRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGT 60

Query: 71  GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKL 130
           GA E+AL+N L PGD+++  + G F   W D  +R   +VDVVE  WGE    + +A  L
Sbjct: 61  GAMEAALSNLLEPGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEAL 120

Query: 131 AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW 190
                H IKA+ + HNET+TGV N L  +  L    +H AL +VD VSS+    FRMDEW
Sbjct: 121 E---QHDIKAVTLTHNETSTGVLNPLEGIGALA--KKHDALLIVDAVSSLGGEPFRMDEW 175

Query: 191 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTA-KSVRVFFDWKDYIKFYNLGTFWPY 249
           G+DVA TGSQKAL  P G+G +  S +ALE  K   K    +FD    +K++  G  +P+
Sbjct: 176 GVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPH 235

Query: 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVT 309
           TP + LLY LR ALDLI EEGLEN   RHRRL KA R  +EA GLK    K E  S TVT
Sbjct: 236 TPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEALGLKLLA-KPELRSPTVT 294

Query: 310 AVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMI 369
           AV+VP  ++  E+VRR  +RYN+ +  GL   AGKVFRIGH+G      +LG L+ +E  
Sbjct: 295 AVLVPEGVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEA 354

Query: 370 LK 371
           LK
Sbjct: 355 LK 356

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. Length = 356

>gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

 Score =  403 bits (1039), Expect = e-140
 Identities = 152/378 (40%), Positives = 221/378 (58%), Gaps = 5/378 (1%)

Query: 11  HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGT 70
            L  PGPV +P +V+ AM R    +RSP    + K +LE ++K+F T +G   L+  +GT
Sbjct: 7   LLLTPGPVPVPPRVLLAMARPMVGHRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGT 66

Query: 71  GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKL 130
            A E+A+ + + PGD+++  + G+F   + +  +R    V V+E +WGE    + +   L
Sbjct: 67  LAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEAL 126

Query: 131 AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW 190
             D    IKA+ +VHNET+TGV N L ++ K   E  H AL +VD VSS+     ++DEW
Sbjct: 127 DKD--PDIKAVAVVHNETSTGVLNPLKEIAKAAKE--HGALLIVDAVSSLGGEPLKVDEW 182

Query: 191 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250
           GIDVA+TGSQKAL  P G+  V  S +ALEA +  K    + D K ++K+       PYT
Sbjct: 183 GIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYT 242

Query: 251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA 310
           P + L+Y LR ALDLI EEGLE  I RHRRL +A R  +EA GL+      E  S TVTA
Sbjct: 243 PPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFAD-PERRSPTVTA 301

Query: 311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL 370
           + VP  ++  ++ R   + Y + +  G   + GK+FRIGH+G++    +L  LA +E  L
Sbjct: 302 IKVPEGVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAAL 361

Query: 371 KDVGYPVKLGSGVAAASA 388
           +++G  V+ GSGV AA  
Sbjct: 362 RELGVKVEAGSGVEAAEK 379

Length = 383

>gnl|CDD|213793 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase

 Score =  120 bits (302), Expect = 1e-30
 Identities = 89/357 (24%), Positives = 143/357 (40%), Gaps = 33/357 (9%)

Query: 12  LFVPGPVHIPDQVIRAM----NRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIP 66
           L  PGP+     V  AM       + ++       +T  + + +  +       T  L+ 
Sbjct: 2   LLTPGPLSTSATVRDAMLVDWCHWDSEFND-----VTDQVRDRLLALAGGDDNHTCVLLQ 56

Query: 67  TTGTGAWESALTNTLSPGDRIISFLI-GQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDV 125
            +GT A E+ +  +L P D  +  LI G +        + L      +     E   L+ 
Sbjct: 57  GSGTFAVEATI-GSLVPRDGKLLVLINGAYGERLAKICEYLGIPHTDLNFSEYEPPDLNR 115

Query: 126 LASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF 185
           +   LAAD    I  +  VH+ET TG+ N L  + K+     H A+ +VD +SS  AI  
Sbjct: 116 IEEALAADPD--ITHVATVHHETTTGILNPLEAIAKVAR--SHGAVLIVDAMSSFGAIPI 171

Query: 186 RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK-TAKSVRVFFDWKDYIKFYNLG 244
            ++E  +D  +  + K L    G G V A    LEAS   A+S  ++ D  D   +    
Sbjct: 172 DIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARS--LYLDLYDQWAYMEKT 229

Query: 245 TFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEW 303
             W +TP    +Y    AL+ +  EG +   I R+RR  +     + A G +     E W
Sbjct: 230 GKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALGFQPLL-PERW 288

Query: 304 FSDTVTAVIVPSHIN------SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHL 354
            S  + + + P   +        E+  R +  Y   L L         FRIG +G +
Sbjct: 289 QSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGKLTL------ADTFRIGTIGEI 339

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level TIGR02326. The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. Length = 355

>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V

 Score =  105 bits (265), Expect = 2e-25
 Identities = 70/303 (23%), Positives = 109/303 (35%), Gaps = 29/303 (9%)

Query: 12  LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPAL------TKTLLEDIKKIFKTTSGTPF-- 63
           L        P  V+ A+     DY       +           E+ ++        P   
Sbjct: 3   LDSAATTQKPQAVLDALQEYYTDYNGNVHRGVHHLGKEATQAYEEAREKVAEFINAPSDE 62

Query: 64  -LIPTTGTGAWES------ALTNTLSPGDRIISFLIGQFS--LLWIDQQQRLNFNVDVVE 114
            +I T+GT   E+      +L  +L PGD I+   +   +  + W +  +R    V V+ 
Sbjct: 63  EIIFTSGTT--EAINLVAISLGRSLKPGDEILVTEMEHHANLVPWQELAKRTGATVRVIP 120

Query: 115 SDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLV 174
            D      LD L   L   T    K + I H    TG  N + ++ KL  EY   AL +V
Sbjct: 121 VDPNGLLDLDALEKLLTPRT----KLVAITHVSNVTGTVNPVEEIGKLAHEYG--ALVVV 174

Query: 175 DGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK--SVRVFF 232
           D   ++      +   G+D       K    PTG+G++      LE           +  
Sbjct: 175 DAAQAVGHRPIDVQALGVDFLAFSGHKLYG-PTGIGVLYGRRDLLEKLPPLLGGGGMIDT 233

Query: 233 DWKDYIKFYNLGT-FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA 291
                  F +  + F   TP+I  + GL AALD + E GLE + +  R L       + A
Sbjct: 234 VSLQETTFADAPSKFEAGTPNIAGIIGLGAALDYLAEIGLEAIEKHERELAAYLYERLLA 293

Query: 292 WGL 294
              
Sbjct: 294 IPG 296

This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 60/272 (22%), Positives = 101/272 (37%), Gaps = 33/272 (12%)

Query: 75  SALTNTLSPGDRIISFLI--GQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAA 132
             L  +L PGD I+   +      + W +  +R    V V+  D      LD L   +  
Sbjct: 102 RGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITP 161

Query: 133 DTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGI 192
            T    K + + H    TG  N + ++ +L   + H AL LVD   +   +   + E G 
Sbjct: 162 KT----KLVALSHVSNVTGTVNPVKEIAELA--HEHGALVLVDAAQAAGHLPIDVQELGC 215

Query: 193 DVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG-----TFW 247
           D       K L  PTG+G++    + LE  +       F      I++ +          
Sbjct: 216 DFLAFSGHKWLLGPTGIGVLYVRKELLEELEP------FLGGGGMIEYVSRDEGVTLAEL 269

Query: 248 PY-----TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCT 298
           P      TP+I    GL AALD + E G+E +    R L   T   +E      G++   
Sbjct: 270 PLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHEREL---TEYLLEGLSELPGVEIYG 326

Query: 299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRY 330
             +      V+  +    I+  ++     ++ 
Sbjct: 327 PPDADRGGIVSFNV--KGIHPHDVATLLDEKG 356

Length = 405

>gnl|CDD|131379 TIGR02326, transamin_PhnW, 2-aminoethylphosphonate--pyruvate transaminase

 Score = 75.2 bits (185), Expect = 6e-15
 Identities = 90/364 (24%), Positives = 156/364 (42%), Gaps = 42/364 (11%)

Query: 12  LFVPGPVHIPDQVIRAMNRN----NEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIP 66
           L  PGP+     V  AM  +    + DY       + + + + +  +     G T  L+ 
Sbjct: 6   LLTPGPLTTSRTVKEAMLFDWCTWDSDYNI-----VVEQIRQQLLALATAEEGYTSVLLQ 60

Query: 67  TTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVL 126
            +GT A E+ + + +    +++  + G +    +   + L   +     D GE    DV+
Sbjct: 61  GSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLG--IPHHVVDTGEVEPPDVV 118

Query: 127 A--SKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID 184
              + LAAD A  I  I +VH ET TG+ N +  V KL   +RH  + +VD +SS   I 
Sbjct: 119 EVEAILAADPA--ITHIALVHCETTTGILNPIEAVAKLA--HRHGKVTIVDAMSSFGGIP 174

Query: 185 FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK-TAKSVRV-FFDWKDYIKFYN 242
             + E  ID  ++ + K +    G G V A    L A K  A+S+ +  +D    ++  N
Sbjct: 175 IDIAELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCME-DN 233

Query: 243 LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAV---EAWGLKNCTQ 299
            G  W +T    +++    AL  + +EG   V  RH+R  +  +  V    A G +    
Sbjct: 234 HGK-WRFTSPTHVVHAFAQALLELEKEG--GVAARHQRYQQNQKTLVAGMRALGFEPLLD 290

Query: 300 KEEWFSDTVTAVIVPSHINS--SEIVRRAWQRYNLSLGLGLNKVAGKV-----FRIGHLG 352
            +E  S  +T+   P   +   ++  +R  ++       G     GKV     FRIG++G
Sbjct: 291 -DEIQSPIITSFYSPEDPDYRFADFYQRLKEQ-------GFVIYPGKVSQVDCFRIGNIG 342

Query: 353 HLNE 356
            ++ 
Sbjct: 343 EVDA 346

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli [Central intermediary metabolism, Phosphorus compounds]. Length = 363

>gnl|CDD|184076 PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional

 Score = 69.9 bits (172), Expect = 4e-13
 Identities = 94/396 (23%), Positives = 149/396 (37%), Gaps = 71/396 (17%)

Query: 12  LFVPGPVHIPDQVIRAMNRN----NEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPT 67
           L  PGP+     V  AM R+    ++D+      ALT ++   +  I  T       +P 
Sbjct: 8   LLTPGPLTTSRTVREAMLRDWGSWDDDFN-----ALTASVRAKLVAI-ATGEEGYTCVPL 61

Query: 68  TGTG--AWESALTNTLSP-------------GDRIISFLIGQFSLLWIDQQQRLNFNVDV 112
            G+G  + E+A+  +L P             G RI                + L     V
Sbjct: 62  QGSGTFSVEAAI-GSLVPRDGKVLVPDNGAYGARIAQIA------------EYLGIAHVV 108

Query: 113 VESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALF 172
           +++   E      + + LAAD    I  + +VH ET TG+ N L ++  +    RH    
Sbjct: 109 LDTGEDEPPDAAEVEAALAADPR--ITHVALVHCETTTGILNPLDEIAAVA--KRHGKRL 164

Query: 173 LVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK-TAKSVRVF 231
           +VD +SS  AI   + E GID  ++ + K +    G G V A    LEA K  ++S+ + 
Sbjct: 165 IVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSL- 223

Query: 232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVE- 290
            D  D   +      W +TP   ++     AL  + EEG   V  R  R     R  V  
Sbjct: 224 -DLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEG--GVPARGARYANNQRTLVAG 280

Query: 291 --AWGLKNCTQKEEWFSDTVTAVIVPSHINSS-----EIVRRAWQRYNLSLGLGLNKVAG 343
             A G +      E  S  +     P+          E ++            G     G
Sbjct: 281 MRALGFEPLL-DAEIQSPIIVTFHAPADPAYDFKEFYERLKEQ----------GFVIYPG 329

Query: 344 KV-----FRIGHLGHLNELQLLGCLAGVEMILKDVG 374
           K+     FRIG +G ++   +   +A +   L  +G
Sbjct: 330 KLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYWMG 365

Length = 368

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 46/148 (31%), Positives = 58/148 (39%), Gaps = 8/148 (5%)

Query: 69  GTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLAS 128
           GTGA E+AL   L PGD +I    G  S  W+   +        V  D      LDV   
Sbjct: 26  GTGANEAALLALLGPGDEVIVDANGHGSRYWV-AAELAGAKPVPVPVDDAGYGGLDVAI- 83

Query: 129 KLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF--- 185
                    +  I I  N T+ GV   L ++RK+  EY    L LVD  S+  A      
Sbjct: 84  LEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYG--ILLLVDAASAGGASPAPGV 141

Query: 186 RMDEWGIDVALTGSQKALSLPTGMGIVC 213
            + E G DV      K L    G G+V 
Sbjct: 142 LIPEGGADVVTFSLHKNLGGE-GGGVVI 168

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 18/152 (11%)

Query: 139 KAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG 198
           K + I H     G  N + ++ KL  +    A  LVDG  ++  +   +     D  +  
Sbjct: 161 KLVAITHVSNVLGTVNPVEEIAKLAHQVG--AKVLVDGAQAVPHMPVDVQALDCDFYVFS 218

Query: 199 SQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL-GTFW---PY----- 249
             K    PTG+G++    + LE       +  F    + I   +   T +   P+     
Sbjct: 219 GHKMYG-PTGIGVLYGKEELLE------QMPPFLGGGEMIAEVSFEETTYNEAPHKFEAG 271

Query: 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRL 281
           TP+I  + GL AA+D +   GLEN+      L
Sbjct: 272 TPNIAGVIGLGAAIDYLEAIGLENIEAHEHEL 303

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403

>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like

 Score = 50.5 bits (122), Expect = 6e-07
 Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 21/213 (9%)

Query: 75  SALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGA-KLDVLASKLA 131
             L     PGD I++ ++   S +  W    +R    + VV  D  +G   L+ L   L 
Sbjct: 79  YGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD-DDGQLDLEALEKLLT 137

Query: 132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191
             T    K + + H     G  N + ++ ++  E       LVDG  S   +   + + G
Sbjct: 138 ERT----KLVAVTHVSNVLGTINPVKEIGEIAHE--AGVPVLVDGAQSAGHMPVDVQDLG 191

Query: 192 ID-VALTGSQKALSLPTGMGIVCASPKALEASK-----TAKSVRVFFDWKDYIKFYNLGT 245
            D +A +G  K L  PTG+G++    + LE              V F+   Y    +   
Sbjct: 192 CDFLAFSG-HKML-GPTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPH--K 247

Query: 246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERH 278
           F   TP+I    GL AA+D + + G+E  I  H
Sbjct: 248 FEAGTPNIAGAIGLGAAIDYLEKIGMEA-IAAH 279

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373

>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 57/282 (20%), Positives = 104/282 (36%), Gaps = 37/282 (13%)

Query: 21  PDQVIRAMNRNNEDY-----RSPAVPALTKTLL-----EDIKKIFKTTSGTPFLIPTTGT 70
           PD+V  AM    ++Y     R     AL  +       + + K+F   S    +     T
Sbjct: 13  PDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNAT 72

Query: 71  GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQ--QRLNFNVDVVESDWGEGAKLDV--L 126
            A   AL   L  GD +I+  +   S+    +   +++   + +V+ D      +    +
Sbjct: 73  TALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCD--NEGLISPERI 130

Query: 127 ASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR 186
              +  +T    K I + H    TG    + ++ +L  E  +   F++D   +   I   
Sbjct: 131 KRAIKTNT----KLIVVSHASNVTGTILPIEEIGELAQE--NGIFFILDAAQTAGVIPID 184

Query: 187 MDEWGID-VALTGSQKALSLPTGM-GIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG 244
           M E  ID +A TG  K L  P G  G+       L+  K+  +              +  
Sbjct: 185 MTELAIDMLAFTG-HKGLLGPQGTGGLYIREGIKLKPLKSGGTGSHSALI-------DQP 236

Query: 245 TFWPY-----TPSIQLLYGLRAALDLIFEEGLENVIERHRRL 281
           +  P      T +   + GL A +  I + G+ N+ ++   L
Sbjct: 237 SELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECML 278

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown [Unknown function, Enzymes of unknown specificity]. Length = 376

>gnl|CDD|235103 PRK03080, PRK03080, phosphoserine aminotransferase; Provisional

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 53/190 (27%), Positives = 79/190 (41%), Gaps = 23/190 (12%)

Query: 36  RSPAVPALTKTLLEDIKKIFKTTSGTPFLI-PTTGTGAWESALTNTLSPGDRIISFLI-G 93
           R   V AL K ++E  +++     G    I P + TGAWE AL + L  G R +  L   
Sbjct: 42  RQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLL--GARRVDHLAWE 99

Query: 94  QFSLLW---IDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETAT 150
            F   W   + +Q +L  +  V+E+D+G    L       A D    +       N T T
Sbjct: 100 SFGSKWATDVVKQLKLE-DPRVLEADYGSLPDLS------AVDFDRDV---VFTWNGTTT 149

Query: 151 GVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMG 210
           GV      V + +   R   L + D  S+  A+     +  +DV     QK L    G G
Sbjct: 150 GVR---VPVARWIGADRE-GLTICDATSAAFALPLDWSK--LDVYTFSWQKVLGGEGGHG 203

Query: 211 IVCASPKALE 220
           +   SP+A+E
Sbjct: 204 MAILSPRAVE 213

Length = 378

>gnl|CDD|224843 COG1932, SerC, Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 56/261 (21%), Positives = 100/261 (38%), Gaps = 34/261 (13%)

Query: 36  RSPAVPALTKTLLEDIKKIFKTTSGTPFLI-PTTGTGAWESALTNTLSPG--DRIISFLI 92
           RS     + +   +D++++         L      TG +  A  N L     D + +   
Sbjct: 44  RSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLLGKRGTDYVDTGAW 103

Query: 93  GQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV 152
            +F++    +  +    +D    + G G+  D+     + + A+    +    NET +GV
Sbjct: 104 SEFAIKEAKKVGKQPKLIDARIEEAGYGSIPDLSKWDFSDNDAY----VHFCWNETISGV 159

Query: 153 TNNLSKVRKLLDEYRHPALFLVDGVSSICA--IDFRMDEWGIDVALTGSQKALSLPTGMG 210
                +V +L  +     L + D  S+I +  ID        DV   G+QK L  P G+ 
Sbjct: 160 -----EVPEL-PDIGSDGLLVADASSAILSRPIDVS----KYDVIYAGAQKNLG-PAGLT 208

Query: 211 IVCASPKALEASKTAKSVRVFFDWKDYIK---FYNLGTFWPYTPSIQLLYGLRAALDLIF 267
           +V   P  LE +++     + FD+  +      YN       TP     Y L      + 
Sbjct: 209 VVIVRPDLLERAESYTLPSI-FDYLTHADNGSMYN-------TPPTFAWYLLGLVFKWLK 260

Query: 268 EE-GLENVIERHRRLGKATRL 287
            + GLE +  R++   KA  L
Sbjct: 261 SQGGLEALEARNQA--KAQLL 279

Length = 365

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	401
PLN02409	401	serine--glyoxylate aminotransaminase	100.0
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	100.0
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	100.0
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	100.0
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	100.0
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	100.0
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	100.0
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	100.0
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	100.0
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	100.0
PRK10874	401	cysteine sulfinate desulfinase; Provisional	100.0
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	100.0
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	100.0
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	100.0
PRK03080	378	phosphoserine aminotransferase; Provisional	100.0
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	100.0
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	100.0
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	100.0
PLN02651	364	cysteine desulfurase	100.0
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	100.0
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	100.0
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	100.0
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	100.0
PRK02948	381	cysteine desulfurase; Provisional	100.0
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	100.0
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	100.0
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	100.0
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	100.0
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	100.0
PLN02452	365	phosphoserine transaminase	100.0
TIGR01814	406	kynureninase kynureninase. This model describes ky	100.0
PRK12462	364	phosphoserine aminotransferase; Provisional	100.0
PLN02724	805	Molybdenum cofactor sulfurase	100.0
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	100.0
PRK14012	404	cysteine desulfurase; Provisional	100.0
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	100.0
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	100.0
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	100.0
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	100.0
PRK13520	371	L-tyrosine decarboxylase; Provisional	100.0
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	100.0
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	100.0
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	100.0
PRK06207	405	aspartate aminotransferase; Provisional	100.0
PRK07324	373	transaminase; Validated	99.98
PRK05957	389	aspartate aminotransferase; Provisional	99.98
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.98
PRK07681	399	aspartate aminotransferase; Provisional	99.98
PRK07179	407	hypothetical protein; Provisional	99.98
PRK02769	380	histidine decarboxylase; Provisional	99.97
PLN00175	413	aminotransferase family protein; Provisional	99.97
PRK07682	378	hypothetical protein; Validated	99.97
PRK06290	410	aspartate aminotransferase; Provisional	99.97
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.97
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.97
PRK08960	387	hypothetical protein; Provisional	99.97
PRK06108	382	aspartate aminotransferase; Provisional	99.97
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.97
PLN02483	489	serine palmitoyltransferase	99.97
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.97
PRK13392	410	5-aminolevulinate synthase; Provisional	99.97
PRK09105	370	putative aminotransferase; Provisional	99.97
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.97
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.97
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.97
PRK08361	391	aspartate aminotransferase; Provisional	99.97
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.97
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.97
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.97
PRK05942	394	aspartate aminotransferase; Provisional	99.97
PRK05764	393	aspartate aminotransferase; Provisional	99.97
PRK08912	387	hypothetical protein; Provisional	99.97
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.97
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.97
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.97
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.97
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.97
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.97
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.97
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.97
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.97
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.97
PRK08068	389	transaminase; Reviewed	99.97
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.97
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.97
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.97
PRK06225	380	aspartate aminotransferase; Provisional	99.97
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.97
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.97
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.97
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.97
PRK09064	407	5-aminolevulinate synthase; Validated	99.97
PRK06348	384	aspartate aminotransferase; Provisional	99.97
PTZ00433	412	tyrosine aminotransferase; Provisional	99.97
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.97
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.97
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.97
PRK07683	387	aminotransferase A; Validated	99.97
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.97
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.97
PRK09148	405	aminotransferase; Validated	99.97
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.97
PRK08636	403	aspartate aminotransferase; Provisional	99.96
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.96
PLN02187	462	rooty/superroot1	99.96
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.96
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.96
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.96
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.96
PRK07337	388	aminotransferase; Validated	99.96
PRK07550	386	hypothetical protein; Provisional	99.96
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.96
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.96
PRK13393	406	5-aminolevulinate synthase; Provisional	99.96
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.96
PRK09082	386	methionine aminotransferase; Validated	99.96
PRK08363	398	alanine aminotransferase; Validated	99.96
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.96
PLN03032	374	serine decarboxylase; Provisional	99.96
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.96
PLN02822	481	serine palmitoyltransferase	99.96
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.96
PTZ00377	481	alanine aminotransferase; Provisional	99.96
PLN02656	409	tyrosine transaminase	99.96
PRK09265	404	aminotransferase AlaT; Validated	99.96
PRK08175	395	aminotransferase; Validated	99.96
PLN02721	353	threonine aldolase	99.96
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.96
PRK12414	384	putative aminotransferase; Provisional	99.96
PRK07908	349	hypothetical protein; Provisional	99.96
PRK07568	397	aspartate aminotransferase; Provisional	99.96
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.96
PRK07777	387	aminotransferase; Validated	99.96
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.96
PRK03321	352	putative aminotransferase; Provisional	99.96
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.96
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.96
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.96
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.96
PRK06855	433	aminotransferase; Validated	99.96
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.96
PRK06107	402	aspartate aminotransferase; Provisional	99.96
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.96
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.96
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.96
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.96
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.96
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.96
PRK06836	394	aspartate aminotransferase; Provisional	99.95
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.95
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.95
PLN02231	534	alanine transaminase	99.95
PRK05839	374	hypothetical protein; Provisional	99.95
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.95
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.95
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.95
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.95
PLN02955	476	8-amino-7-oxononanoate synthase	99.95
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.95
PLN02672	1082	methionine S-methyltransferase	99.95
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.95
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.95
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.95
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.95
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.95
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.95
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.94
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.94
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.94
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.94
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.94
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.94
PRK09275	527	aspartate aminotransferase; Provisional	99.94
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.94
PRK10534	333	L-threonine aldolase; Provisional	99.94
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.94
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.94
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.94
PTZ00376	404	aspartate aminotransferase; Provisional	99.94
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.94
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.94
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.94
PLN02880	490	tyrosine decarboxylase	99.94
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.93
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.93
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.93
PLN02590	539	probable tyrosine decarboxylase	99.93
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.93
PLN02271	586	serine hydroxymethyltransferase	99.93
PLN02263	470	serine decarboxylase	99.93
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.93
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.93
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.93
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.93
PRK08637	388	hypothetical protein; Provisional	99.93
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	99.93
PLN02242	418	methionine gamma-lyase	99.93
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.93
PRK09028	394	cystathionine beta-lyase; Provisional	99.93
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.92
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.92
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.92
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.92
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.92
PRK06767	386	methionine gamma-lyase; Provisional	99.92
PRK08776	405	cystathionine gamma-synthase; Provisional	99.92
PRK08114	395	cystathionine beta-lyase; Provisional	99.92
PLN02397	423	aspartate transaminase	99.92
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.92
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.92
PRK06234	400	methionine gamma-lyase; Provisional	99.92
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.92
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.92
PRK08861	388	cystathionine gamma-synthase; Provisional	99.92
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.92
PRK08045	386	cystathionine gamma-synthase; Provisional	99.92
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.92
PRK05968	389	hypothetical protein; Provisional	99.92
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.92
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.92
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.92
PRK08354	311	putative aminotransferase; Provisional	99.92
PRK08064	390	cystathionine beta-lyase; Provisional	99.92
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.92
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.92
PRK08249	398	cystathionine gamma-synthase; Provisional	99.92
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.91
PRK05367	954	glycine dehydrogenase; Provisional	99.91
PRK06460	376	hypothetical protein; Provisional	99.91
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.91
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.91
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.91
PRK02627	396	acetylornithine aminotransferase; Provisional	99.91
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.91
PRK08574	385	cystathionine gamma-synthase; Provisional	99.91
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.91
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.91
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.91
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.91
PRK05367	954	glycine dehydrogenase; Provisional	99.91
PRK07503	403	methionine gamma-lyase; Provisional	99.91
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.91
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.9
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.9
PRK04311	464	selenocysteine synthase; Provisional	99.9
PRK07811	388	cystathionine gamma-synthase; Provisional	99.9
PRK07505	402	hypothetical protein; Provisional	99.9
PRK05967	395	cystathionine beta-lyase; Provisional	99.9
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.9
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.9
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.9
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.9
PRK12566	954	glycine dehydrogenase; Provisional	99.9
PRK07050	394	cystathionine beta-lyase; Provisional	99.9
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.9
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.9
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.9
PLN02368	407	alanine transaminase	99.9
PLN02624	474	ornithine-delta-aminotransferase	99.89
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.89
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.89
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.89
PLN02509	464	cystathionine beta-lyase	99.89
PRK07582	366	cystathionine gamma-lyase; Validated	99.89
PRK07049	427	methionine gamma-lyase; Validated	99.89
PRK07671	377	cystathionine beta-lyase; Provisional	99.89
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.89
PLN00144	382	acetylornithine transaminase	99.89
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.89
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.89
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.89
PRK05939	397	hypothetical protein; Provisional	99.89
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.89
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.88
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.88
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.88
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.88
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.88
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.88
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.88
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.88
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.87
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.87
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.87
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.87
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.87
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.87
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.87
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.87
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.87
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.86
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.86
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.86
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.86
PRK06062	451	hypothetical protein; Provisional	99.86
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.86
PRK04260	375	acetylornithine aminotransferase; Provisional	99.86
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.86
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.86
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.85
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.85
PRK06105	460	aminotransferase; Provisional	99.85
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.85
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.85
PRK05965	459	hypothetical protein; Provisional	99.85
PRK06541	460	hypothetical protein; Provisional	99.85
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.85
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.85
PRK07482	461	hypothetical protein; Provisional	99.85
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.85
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.85
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.85
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.84
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.84
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.84
PRK06434	384	cystathionine gamma-lyase; Validated	99.84
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.84
PRK15029	755	arginine decarboxylase; Provisional	99.84
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.84
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.84
PRK07678	451	aminotransferase; Validated	99.83
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.83
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.83
PRK06917	447	hypothetical protein; Provisional	99.83
PRK07483	443	hypothetical protein; Provisional	99.83
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.83
PRK13237	460	tyrosine phenol-lyase; Provisional	99.82
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.82
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.82
PRK07481	449	hypothetical protein; Provisional	99.82
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.82
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.82
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.82
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.82
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.81
PRK07036	466	hypothetical protein; Provisional	99.81
PRK12403	460	putative aminotransferase; Provisional	99.81
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.81
PRK13578	720	ornithine decarboxylase; Provisional	99.81
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.81
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.8
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	99.8
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	99.8
PRK06149	972	hypothetical protein; Provisional	99.8
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	99.8
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.8
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.8
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.8
PRK07480	456	putative aminotransferase; Validated	99.8
PRK15400	714	lysine decarboxylase CadA; Provisional	99.8
PRK06148	1013	hypothetical protein; Provisional	99.8
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.79
PRK07046	453	aminotransferase; Validated	99.79
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.78
PRK08297	443	L-lysine aminotransferase; Provisional	99.78
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	99.77
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.76
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.76
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	99.76
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.76
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.76
KOG0629	510	consensus Glutamate decarboxylase and related prot	99.75
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.75
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.74
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	99.73
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.73
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.73
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	99.72
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.7
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.69
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.69
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.69
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.69
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.68
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.59
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.59
COG4100	416	Cystathionine beta-lyase family protein involved i	99.57
PRK12566	954	glycine dehydrogenase; Provisional	99.55
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.54
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.51
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.49
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	99.45
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	99.44
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	99.44
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	99.42
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	99.34
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	99.31
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	99.23
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	99.02
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	98.92
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	98.5
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	98.45
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	98.4
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	97.62
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	96.39
PF02310	121	B12-binding: B12 binding domain; InterPro: IPR0061	87.27
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	85.3
COG1105	310	FruK Fructose-1-phosphate kinase and related fruct	84.71
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	82.03
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	81.49

>PLN02409 serine--glyoxylate aminotransaminase

Probab=100.00  E-value=1.7e-54  Score=412.46  Aligned_cols=399  Identities=81%  Similarity=1.308  Sum_probs=359.0

Q ss_pred             CCCCCCCCCcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc
Q 015729            1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT   80 (401)
Q Consensus         1 ~~~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~   80 (401)
                      |+|.+.|+..+||.|||..++++|++++......|+++.+.+.++++++.+++++|.+.++.+++++++|++++.++.++
T Consensus         1 ~~~~~~~~~~~l~~pGP~~~~~~V~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~   80 (401)
T PLN02409          1 MDYVYAPGRNHLFVPGPVNIPERVLRAMNRPNEDHRSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNT   80 (401)
T ss_pred             CCcccCCCCceeccCCCCCCCHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhc
Confidence            89999999999999999999999999999988778888899999999999999999976556899999999999999899


Q ss_pred             CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHH
Q 015729           81 LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVR  160 (401)
Q Consensus        81 ~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~  160 (401)
                      +++||+|++++++|++..|...++..|++++.++.+.+..+|++++++.+++++.+++++++++|++|+||.+.|+++|.
T Consensus        81 ~~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~  160 (401)
T PLN02409         81 LSPGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVR  160 (401)
T ss_pred             CCCCCEEEEeCCCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHH
Confidence            99999999999999998888888999999999998876668999999999863212689999999999999999999999


Q ss_pred             HH--hhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHH
Q 015729          161 KL--LDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYI  238 (401)
Q Consensus       161 ~l--~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (401)
                      ++  |++  +|+++++|++++.|..+++.+++++|++++|+|||+++|+|+|+++++++.++++........++++....
T Consensus       161 ~l~~~~~--~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (401)
T PLN02409        161 KLLDCAQ--HPALLLVDGVSSIGALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADYL  238 (401)
T ss_pred             HHHhhhc--cCcEEEEEcccccCCccccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHHHH
Confidence            99  999  99999999999999999999999999999999999999999999999999998887655445566776665


Q ss_pred             HHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCC
Q 015729          239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN  318 (401)
Q Consensus       239 ~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  318 (401)
                      +..+.|.++++|++...++++.++++++.+.|++++.++..++.+++++.|+++|++++.+.+..+++.++++.+|++.+
T Consensus       239 ~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p~~~~  318 (401)
T PLN02409        239 KFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVPEGID  318 (401)
T ss_pred             HHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCCCCCC
Confidence            55556655577899999999999999999989999999999999999999998999888754444577788888888888


Q ss_pred             HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHccCCCCC
Q 015729          319 SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIP  398 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (401)
                      ..++.+.|.++++|.+..|.....++.+||++.++++++|+..++++++++|+++|.....+.++.++.++|++..|.+|
T Consensus       319 ~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  398 (401)
T PLN02409        319 SAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVGYPVKLGSGVAAAQAYLQKTTPLIP  398 (401)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhhcCCccc
Confidence            88999999888899999998876788999999999999999999999999999999888888899999999999999999


Q ss_pred             CCC
Q 015729          399 SRI  401 (401)
Q Consensus       399 ~~~  401 (401)
                      |||
T Consensus       399 ~~~  401 (401)
T PLN02409        399 SRI  401 (401)
T ss_pred             ccC
Confidence            997

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=9.4e-54  Score=389.06  Aligned_cols=377  Identities=41%  Similarity=0.668  Sum_probs=355.3

Q ss_pred             cccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEE
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIIS   89 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~   89 (401)
                      -.|++|||.++++.|++++.+....|+++.+...+.++.+.+..+++.+..+.++++++||.|+++++.++++|||+|++
T Consensus         6 ~~Ll~PGP~~v~~~V~~am~~~~~~h~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv   85 (383)
T COG0075           6 RLLLTPGPVPVPPRVLLAMARPMVGHRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVEPGDKVLV   85 (383)
T ss_pred             ceeeeCCCCCCCHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEE
Confidence            68999999999999999999999999999999999999999999999986566788999999999999999999999999


Q ss_pred             EcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCC
Q 015729           90 FLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP  169 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~  169 (401)
                      ..+|.|+..|.++++++|++++.+..+++..+|++++++++++++  .+++++++|..++||.+.|+++|.++|++  +|
T Consensus        86 ~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~--~~~~V~~vH~ETSTGvlnpl~~I~~~~k~--~g  161 (383)
T COG0075          86 VVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDP--DIKAVAVVHNETSTGVLNPLKEIAKAAKE--HG  161 (383)
T ss_pred             EeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCC--CccEEEEEeccCcccccCcHHHHHHHHHH--cC
Confidence            999999999999999999999999999988999999999999654  67899999999999999999999999999  99


Q ss_pred             cEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCC
Q 015729          170 ALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY  249 (401)
Q Consensus       170 ~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  249 (401)
                      .++|+|+..++|..+++.++||+|+++++++|++++|+|+|++.++++.++.+......++|+++..+.+.++....|++
T Consensus       162 ~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~  241 (383)
T COG0075         162 ALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPY  241 (383)
T ss_pred             CEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999887777889999999988876457899


Q ss_pred             CCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhh
Q 015729          250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQR  329 (401)
Q Consensus       250 ~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  329 (401)
                      ||++..++++.++++.+.++|++++.++++++++.++++++++|++++. ++...++++..+..|++++...+...++++
T Consensus       242 Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~-~~~~~s~tvta~~~P~g~~~~~~~~~~~~~  320 (383)
T COG0075         242 TPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFA-DPERRSPTVTAIKVPEGVDDKKVRRALLKE  320 (383)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCcccc-CcccCCCceEEEECCCCCCcHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999998 666788999999999998876777788888


Q ss_pred             CCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Q 015729          330 YNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQ  391 (401)
Q Consensus       330 ~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~  391 (401)
                      +|+.+..|..+..++.+||++.++.+.+|+..++.+|+.+|.++|.....++++++|..-|.
T Consensus       321 ~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g~~~~~g~~v~aa~~v~~  382 (383)
T COG0075         321 YGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALRELGVKVEAGSGVEAAEKVLR  382 (383)
T ss_pred             CCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999988764

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=100.00  E-value=2.2e-48  Score=332.12  Aligned_cols=366  Identities=40%  Similarity=0.619  Sum_probs=340.8

Q ss_pred             CCCCCCCCCcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc
Q 015729            1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT   80 (401)
Q Consensus         1 ~~~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~   80 (401)
                      ||+|+-|.+. ||+|||+.++++|++|+..+...|.++++.+++.++++-+...|.+.++...++.++|+.|+++++.++
T Consensus        10 ~~~m~~p~~~-L~gPGPsnl~~~V~~A~~~~~lgh~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~   88 (385)
T KOG2862|consen   10 LDPMYVPVRT-LLGPGPSNLSGRVQEAMSRPSLGHMSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNL   88 (385)
T ss_pred             hccccCCcce-eecCCCcCCCHHHHHhhcCCccccCCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhh
Confidence            7899999999 999999999999999999999999999999999999999999999988888999999999999999999


Q ss_pred             CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc-hHHH
Q 015729           81 LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-LSKV  159 (401)
Q Consensus        81 ~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~-l~~i  159 (401)
                      +.|||+|++...|.++..+...+++.|+++..|+.+.+....++++++++.+   +++++++++|..+.||++.| ++.+
T Consensus        89 lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsq---h~p~~vfv~hgdsSTgV~q~~~~~~  165 (385)
T KOG2862|consen   89 LEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQ---HKPKAVFVTHGDSSTGVLQDLLAIS  165 (385)
T ss_pred             cCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHh---cCCceEEEEecCccccccchHHHHH
Confidence            9999999999999999999999999999999999999988999999999987   67999999999999999999 5668


Q ss_pred             HHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCC--CccccchHHH
Q 015729          160 RKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS--VRVFFDWKDY  237 (401)
Q Consensus       160 ~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~--~~~~~~~~~~  237 (401)
                      .++|++  |++++++|.+.++|+.+|..+++++|+....++|.+++|+|++.++.+++..++++..+.  ..+|+++...
T Consensus       166 g~lc~k--~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~  243 (385)
T KOG2862|consen  166 GELCHK--HEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDILRL  243 (385)
T ss_pred             HHHhhc--CCeEEEEechhhcCCccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHHhh
Confidence            889998  999999999999999999999999999999999999999999999999999999987776  5678888877


Q ss_pred             HHHhhcC---CCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcC
Q 015729          238 IKFYNLG---TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVP  314 (401)
Q Consensus       238 ~~~~~~g---~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~  314 (401)
                      .+++..+   +.|+.|+++..++++.+||+.+.++|+++..++.+++.++++..|+++|++.+..++..+.+++..+.+|
T Consensus       244 ~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp  323 (385)
T KOG2862|consen  244 GNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVP  323 (385)
T ss_pred             cchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecC
Confidence            7666544   6789999999999999999999999999999999999999999999999999988877788999999999


Q ss_pred             CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecc-cCCHHHHHHHHHHHHHHHHh
Q 015729          315 SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       315 ~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~-~~~~~di~~~~~~i~~~l~~  372 (401)
                      .++|.+++..+++.++++.+..|..+..++++||+..+ ..+.+-++..++.|+..+++
T Consensus       324 ~gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~  382 (385)
T KOG2862|consen  324 YGVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR  382 (385)
T ss_pred             CCCCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence            99999999999999989999888888889999999766 45688999999999888764

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-44  Score=339.43  Aligned_cols=349  Identities=20%  Similarity=0.244  Sum_probs=302.7

Q ss_pred             CcccccCCCcCChHHHHHHHccCc-----CCCCCc-----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNN-----EDYRSP-----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~-----~~~~~~-----~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      -.|++.+..++.|..|++++.++.     +.+++.     ...+.++++|+.+++++|.++.+.|+||.|+|+|++.+..
T Consensus        23 ~vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~  102 (405)
T COG0520          23 LVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVAR  102 (405)
T ss_pred             eEEecCcccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHH
Confidence            479999999999999999999743     223322     2345789999999999999865559999999999999988


Q ss_pred             cc---CCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc
Q 015729           79 NT---LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        79 ~~---~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~  153 (401)
                      ++   +++||+|+++..+|+++.  |..++++.|++++.++.+.++.++.++++..++    ++||++.+++.+|.||.+
T Consensus       103 ~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~----~~Tklvais~vSn~tG~~  178 (405)
T COG0520         103 GLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLIT----PKTKLVALSHVSNVTGTV  178 (405)
T ss_pred             HhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcC----CCceEEEEECcccccccc
Confidence            77   799999999999999997  888999999999999999888999999999887    467999999999999999


Q ss_pred             cchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCcccc-
Q 015729          154 NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF-  232 (401)
Q Consensus       154 ~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~-  232 (401)
                      .|+++|.++||+  +|+++++|++|+.+..++|++++++|++.+|+|||+.||.|+|++++++++++.+.+........ 
T Consensus       179 ~pv~~I~~la~~--~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P~~~gg~~~~  256 (405)
T COG0520         179 NPVKEIAELAHE--HGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIE  256 (405)
T ss_pred             chHHHHHHHHHH--cCCEEEEECccccCccCCCchhcCCCEEEEcccccccCCCceEEEEEchHHHhhcCCcccCCCcee
Confidence            999999999999  99999999999999999999999999999999999999999999999999999986655432221 


Q ss_pred             --------chHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCcc
Q 015729          233 --------DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEW  303 (401)
Q Consensus       233 --------~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~  303 (401)
                              .+.....+++.|+     +++...+++.+|++++++.|++++.++.+++.+++.+.|.++ ++++..+.+ .
T Consensus       257 ~~~~~~~~~~~~~p~rfe~gT-----pn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~-~  330 (405)
T COG0520         257 YVSRDEGVTLAELPLRFEAGT-----PNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPD-A  330 (405)
T ss_pred             eecccccccccCcchhhccCC-----chHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc-c
Confidence                    1233456778776     999999999999999999999999999999999999999997 899987654 2


Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCC--------CcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          304 FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVA--------GKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~--------~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      ....++.|.+ ++++..++.+.|.++ ||.++.|..+-.        ...+|+|++.++|++|||+++++|++..+
T Consensus       331 ~r~~~vsF~v-~~~~~~dv~~~L~~~-gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~  404 (405)
T COG0520         331 DRGGIVSFNV-KGIHPHDVATLLDEK-GIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA  404 (405)
T ss_pred             cCceEEEEEe-CCCCHHHHHHHHHhC-CeEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence            3446888998 677899999999877 799999976531        12399999999999999999999998764

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=100.00  E-value=1.1e-42  Score=327.97  Aligned_cols=355  Identities=47%  Similarity=0.749  Sum_probs=294.1

Q ss_pred             ccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEE
Q 015729           11 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISF   90 (401)
Q Consensus        11 ~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   90 (401)
                      .+|+|||.++++++++++.+....+++....+...++++.+++++|.+.++.+++++|+|+|+..++.+++++||+|+++
T Consensus         1 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~   80 (356)
T cd06451           1 LLLIPGPSNVPPRVLKAMNRPMLGHRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVG   80 (356)
T ss_pred             CcccCCCcCCCHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEe
Confidence            47999999999999999988655566666677799999999999999665557889999999999999999999999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCc
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPA  170 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~  170 (401)
                      .++|++..+...++..|++++.++.+.++.+|++++++.+++   ++++++++++++|++|.+.|+++|.++|++  +|+
T Consensus        81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~---~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~--~~~  155 (356)
T cd06451          81 VNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQ---HDIKAVTLTHNETSTGVLNPLEGIGALAKK--HDA  155 (356)
T ss_pred             cCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhc---cCCCEEEEeccCCCcccccCHHHHHHHHHh--cCC
Confidence            988887555567888999999999887778899999999974   367999999999999999999999999999  999


Q ss_pred             EEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhcc-CCCCccccchHHHHHHhhcCCCCCC
Q 015729          171 LFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKT-AKSVRVFFDWKDYIKFYNLGTFWPY  249 (401)
Q Consensus       171 ~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~  249 (401)
                      ++++|++|++|..+++....++|++++|+||+++++.|+|++++++++.+.+.. .....++++..........+.++.+
T Consensus       156 ~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (356)
T cd06451         156 LLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPH  235 (356)
T ss_pred             EEEEeeehhccCccccccccCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCC
Confidence            999999999988777777778999999999999888899999999998877753 1112233333332222222323456


Q ss_pred             CCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhh
Q 015729          250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQR  329 (401)
Q Consensus       250 ~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  329 (401)
                      ++++..++++.++++.+...++++..++..++++++++.|+++|+++..+... ..+.++++.++.+.+..++++.|.++
T Consensus       236 t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~  314 (356)
T cd06451         236 TPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEALGLKLLAKPEL-RSPTVTAVLVPEGVDGDEVVRRLMKR  314 (356)
T ss_pred             CChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCccc-CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            78888888999999998888888999999999999999999988877654322 35556677776667888999999877


Q ss_pred             CCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          330 YNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       330 ~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      +||.+.+|..+..++++|++++.+++++|+++++++|+++++
T Consensus       315 ~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~  356 (356)
T cd06451         315 YNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEALK  356 (356)
T ss_pred             CCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            799999887654567999999998999999999999998763

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=100.00  E-value=1.3e-41  Score=321.34  Aligned_cols=354  Identities=21%  Similarity=0.296  Sum_probs=294.3

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCC-ceEEecCChhHHHHHHHhccCCCCCeE
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGTGAWESALTNTLSPGDRI   87 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~~i~~~~g~t~a~~~~~~~~~~~gd~v   87 (401)
                      +.+||+|||..++++|.+++...+ .++...+.+.++++++.+++++|.++. +.+++++|+|+|++.++.+++.++|++
T Consensus         3 ~~~l~~pgp~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~v   81 (363)
T TIGR02326         3 NYLLLTPGPLTTSRTVKEAMLFDW-CTWDSDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKL   81 (363)
T ss_pred             ceeEecCCCCCCCHHHHHHhCCCC-CCCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeE
Confidence            467899999999999999999977 456677888999999999999999754 458999999999999999998999998


Q ss_pred             EEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcC
Q 015729           88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR  167 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~  167 (401)
                      ++..+++|+..+...++..|++++.++.+.++.+|++++++++++++  +++++.+++++|+||.+.|+++|.++|++  
T Consensus        82 lv~~~~~~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~--~~~~v~~~~~~~~tG~~~~i~~I~~l~~~--  157 (363)
T TIGR02326        82 LVVINGAYGARIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAADP--AITHIALVHCETTTGILNPIEAVAKLAHR--  157 (363)
T ss_pred             EEEeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCC--CccEEEEEeecCCccccCcHHHHHHHHHH--
Confidence            88888878776667788899999999998888899999999987643  56788999999999999999999999999  


Q ss_pred             CCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhc-CCC
Q 015729          168 HPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL-GTF  246 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~  246 (401)
                      +|+++++|++|++|..+++..++++|++++|+||++++++|+|+++++++.++++.... ...+.++...+..+.. ...
T Consensus       158 ~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  236 (363)
T TIGR02326       158 HGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNA-RSLSLDLYDQWRCMEDNHGK  236 (363)
T ss_pred             cCCEEEEEccccccCcccchhhcCccEEEecCccccccCCcceEEEECHHHHHHhhcCC-CceeecHHHHHHHHhccCCC
Confidence            99999999999999989998889999999999999999999999999999887765422 2234443333333321 112


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCC--CCHHHHH
Q 015729          247 WPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH--INSSEIV  323 (401)
Q Consensus       247 ~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~  323 (401)
                      +.++++...+.++.++++.+... +++++.+++.++++++++.|+++|+++..+. ...++.++++.+|+.  .+..++.
T Consensus       237 ~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~  315 (363)
T TIGR02326       237 WRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRALGFEPLLDD-EIQSPIITSFYSPEDPDYRFADFY  315 (363)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCc-ccCCceEEEEECCCCCCCCHHHHH
Confidence            34567888899999999988766 4888999999999999999999888876543 224566777888653  5677899


Q ss_pred             HHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          324 RRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       324 ~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      +.|.++ ||.+.+|... ..+++|++++++++.+|+++++++|++++.
T Consensus       316 ~~L~~~-gi~v~~g~~~-~~~~iRi~~~~~~~~edv~~~l~~l~~~l~  361 (363)
T TIGR02326       316 QRLKEQ-GFVIYPGKVS-QVDCFRIGNIGEVDAADITRLLTAIGKAMY  361 (363)
T ss_pred             HHHHHC-CEEEECCcCC-CCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            999866 9999988653 357899998888999999999999998764

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=100.00  E-value=5e-41  Score=317.97  Aligned_cols=358  Identities=23%  Similarity=0.296  Sum_probs=295.7

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCC-ceEEecCChhHHHHHHHhccCCCCCeE
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGTGAWESALTNTLSPGDRI   87 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~~i~~~~g~t~a~~~~~~~~~~~gd~v   87 (401)
                      +.++|+|||..+++.+++++.... .++.+.+.+.+.++++.+++++|.++. ..+++++|+|++++.++.+++.+||+|
T Consensus         5 ~~~~~~pgP~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~v   83 (368)
T PRK13479          5 DPLLLTPGPLTTSRTVREAMLRDW-GSWDDDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKV   83 (368)
T ss_pred             CceeecCCCCCCCHHHHHHhCCCC-CCCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccCCCCeE
Confidence            456899999999999999999876 566666778899999999999998653 457899999999999999999999999


Q ss_pred             EEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcC
Q 015729           88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR  167 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~  167 (401)
                      +++.+++++..+...++..|++++.++.+.++.+|++++++.+++++  +++++++++++|+||...|+++|.++|++  
T Consensus        84 lv~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~--~~~~v~~~~~~~~tG~~~~~~~i~~l~~~--  159 (368)
T PRK13479         84 LVPDNGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADP--RITHVALVHCETTTGILNPLDEIAAVAKR--  159 (368)
T ss_pred             EEEeCCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCC--CCcEEEEEcccCccccccCHHHHHHHHHH--
Confidence            99999888876667788899999999998777789999999987543  56789999999999999999999999999  


Q ss_pred             CCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCC
Q 015729          168 HPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFW  247 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  247 (401)
                      +|+++|+|+++++|..+++..++++|++++|+||+++|++|+|+++++++.++.+.... ..++.++............+
T Consensus       160 ~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  238 (368)
T PRK13479        160 HGKRLIVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNS-RSLSLDLYDQWAYMEKTGQW  238 (368)
T ss_pred             cCCEEEEEcccccCCccccccccCceEEEecCccccccCCCceEEEECHHHHHHhhcCC-CCeeecHHHHHhhhcccCCC
Confidence            99999999999999888888888999999999999988999999999999988876543 23344433333222222233


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCC--CCHHHHHH
Q 015729          248 PYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH--INSSEIVR  324 (401)
Q Consensus       248 ~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~  324 (401)
                      .++++...++++.++++.+.+. ++++..+++.++++++++.|+++|+++..+. ...++.++.+.++..  .+..++.+
T Consensus       239 ~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~  317 (368)
T PRK13479        239 RFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALGFEPLLDA-EIQSPIIVTFHAPADPAYDFKEFYE  317 (368)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCc-hhcCceEEEEECCCCCCcCHHHHHH
Confidence            4578888889999999988665 4888889999999999999999998876432 224555676776543  56788999


Q ss_pred             HHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          325 RAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       325 ~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                      .|.++ ||.+.++... ..+.+|+++.++++++|+++++++|+++++++|.
T Consensus       318 ~L~~~-gi~v~~g~~~-~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~~~  366 (368)
T PRK13479        318 RLKEQ-GFVIYPGKLT-QVDTFRIGCIGDVDAADIRRLVAAIAEALYWMGI  366 (368)
T ss_pred             HHHHC-CEEEecCCCC-CCCEEEEecCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            99877 9999877433 2457999988889999999999999999988764

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=100.00  E-value=4e-41  Score=318.74  Aligned_cols=344  Identities=24%  Similarity=0.344  Sum_probs=286.5

Q ss_pred             cccccCCCcCChHHHHHHHccCc----------CCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNN----------EDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN   79 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~----------~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~   79 (401)
                      .||+.+|++++|+.|++++.+..          .++.+..+.+.+.++++.+++++|.++++.+++++|+|.|++.++.+
T Consensus         1 iYld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~   80 (371)
T PF00266_consen    1 IYLDNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASS   80 (371)
T ss_dssp             EEEBTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHH
T ss_pred             CEeeCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhc
Confidence            58999999999999999999852          12334557788999999999999998856699999999999999988


Q ss_pred             c---CCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccccc
Q 015729           80 T---LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN  154 (401)
Q Consensus        80 ~---~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~  154 (401)
                      +   +++||+|++...+|++..  |...++..|++++.++.+.++.+|++++++.++    ++++++++++.+|.+|...
T Consensus        81 l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~----~~~~lv~~~~~~~~tG~~~  156 (371)
T PF00266_consen   81 LLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALN----PDTRLVSISHVENSTGVRN  156 (371)
T ss_dssp             HHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHH----TTESEEEEESBETTTTBBS
T ss_pred             cccccccccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhc----cccceEEeecccccccEEe
Confidence            8   799999999999999998  777777899999999998888899999999997    4679999999999999999


Q ss_pred             chHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccch
Q 015729          155 NLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW  234 (401)
Q Consensus       155 ~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~  234 (401)
                      |+++|.++|++  +|+++++|++|++|..++|++++++|++++|+|| |+||+|+|++++++++.+++.+......+.+.
T Consensus       157 pi~~I~~~~~~--~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~K-l~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~  233 (371)
T PF00266_consen  157 PIEEIAKLAHE--YGALLVVDAAQSAGCVPIDLDELGADFLVFSSHK-LGGPPGLGFLYVRPEAIERLRPAKPGGGYLDF  233 (371)
T ss_dssp             SHHHHHHHHHH--TTSEEEEE-TTTTTTSS--TTTTTESEEEEESTS-TTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTH
T ss_pred             eeceehhhhhc--cCCceeEechhccccccccccccccceeeecccc-cCCCCchhhheehhhhhhcccccccccccccc
Confidence            99999999999  9999999999999999999999999999999999 88999999999999999999766554433333


Q ss_pred             HHHHHH---hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEE
Q 015729          235 KDYIKF---YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTA  310 (401)
Q Consensus       235 ~~~~~~---~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~  310 (401)
                      ......   -....+..+|++...++++..+++.+.+.|++++.++..++.+++.+.|.++ ++.+..++....++.++.
T Consensus       234 ~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  313 (371)
T PF00266_consen  234 PSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVS  313 (371)
T ss_dssp             HHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEE
T ss_pred             ccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEE
Confidence            322111   1112233457999999999999999988889999999999999999999998 666656444456677888


Q ss_pred             EEcCCCCCHHHHHHHHHhhCCeEEccCCCCC--------CCcEEEEeecccCCHHHHHHH
Q 015729          311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKV--------AGKVFRIGHLGHLNELQLLGC  362 (401)
Q Consensus       311 ~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~--------~~~~~Ri~~~~~~~~~di~~~  362 (401)
                      +.+ .+.+..++.+.|.++ ||.+..|..+.        .++.+|||++.++|++|||++
T Consensus       314 ~~~-~~~~~~~~~~~L~~~-~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l  371 (371)
T PF00266_consen  314 FNL-PGSDADDVVKYLEER-GIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL  371 (371)
T ss_dssp             EEE-TTSSHHHHHHHHHHH-TEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred             Eee-cCCCHHHHHHHHhhc-CEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence            988 667889999999988 99999876542        247899999999999999985

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=100.00  E-value=4.1e-40  Score=310.57  Aligned_cols=350  Identities=23%  Similarity=0.345  Sum_probs=286.6

Q ss_pred             cccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCc-eEEecCChhHHHHHHHhccCCCCCeEEEE
Q 015729           12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGT-PFLIPTTGTGAWESALTNTLSPGDRIISF   90 (401)
Q Consensus        12 ~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~-~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   90 (401)
                      +|+|||..+++++.+++.. ...++...+.+.+.++++.+++++|.++.+ .+++++|+|+++..++.+++.++|++++.
T Consensus         2 ~~~p~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~   80 (355)
T TIGR03301         2 LLTPGPLSTSATVRDAMLV-DWCHWDSEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVL   80 (355)
T ss_pred             cCcCCCCCCCHHHHHHhhh-hccCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEE
Confidence            7999999999999999998 334555566788999999999999998653 57889999999999999988889999988


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCc
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPA  170 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~  170 (401)
                      .+++|+..+...++..|++++.++.+.++.+|++++++.+++++  +++.+++++++|++|.+.|+++|.++|++  +|+
T Consensus        81 ~~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~--~~~~v~~~~~~~~~G~~~~~~~i~~l~~~--~~~  156 (355)
T TIGR03301        81 INGAYGERLAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAADP--DITHVATVHHETTTGILNPLEAIAKVARS--HGA  156 (355)
T ss_pred             CCCchhhHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHhCC--CceEEEEEecCCcccchhHHHHHHHHHHH--cCC
Confidence            88887765556788899999999988777899999999997643  56788889999999999999999999999  999


Q ss_pred             EEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCC
Q 015729          171 LFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT  250 (401)
Q Consensus       171 ~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  250 (401)
                      ++|+|+++++|..++++..+++|++++|+||++++++|+|+++++++.++.+... ....++++.....++.....+.++
T Consensus       157 ~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t  235 (355)
T TIGR03301       157 VLIVDAMSSFGAIPIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGN-ARSLYLDLYDQWAYMEKTGKWRFT  235 (355)
T ss_pred             EEEEEeccccCCcccchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCC-CCCceeeHHHHHHHhhhcCCCCCC
Confidence            9999999999888888888899999999999998889999999999998887642 223334443333333322234567


Q ss_pred             CcHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCC--CCHHHHHHHHH
Q 015729          251 PSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH--INSSEIVRRAW  327 (401)
Q Consensus       251 ~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~  327 (401)
                      ++...++++.++++.+.++| +++..++++++++++++.|+++|+++..+.. ...+.++++.+|..  .+..++.+.|.
T Consensus       236 ~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~  314 (355)
T TIGR03301       236 PPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALGFQPLLPER-WQSPIIVSFLYPDDPDFDFDDFYQELK  314 (355)
T ss_pred             CcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCC-CCCCcEEEEECCCCCcchHHHHHHHHH
Confidence            88888899999999988776 8889999999999999999988887654322 23445677887643  35568899998


Q ss_pred             hhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          328 QRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       328 ~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      ++ ||.+.++.... .+++||+++++++++|+++++++|++++
T Consensus       315 ~~-gi~i~~~~~~~-~~~iRis~~~~~~~~~i~~~~~~l~~~~  355 (355)
T TIGR03301       315 ER-GFVIYPGKLTL-ADTFRIGTIGEIDAADIERLLEAIKDAL  355 (355)
T ss_pred             HC-CEEEECCcccc-ccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence            76 99998885433 3689999988899999999999998753

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=100.00  E-value=1.1e-39  Score=311.72  Aligned_cols=348  Identities=17%  Similarity=0.184  Sum_probs=283.2

Q ss_pred             CCcccccCCCcCChHHHHHHHccCcC-----CCCCc-----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 015729            8 GKNHLFVPGPVHIPDQVIRAMNRNNE-----DYRSP-----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL   77 (401)
Q Consensus         8 ~~~~~~~~~p~~~~~~v~~a~~~~~~-----~~~~~-----~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~   77 (401)
                      +..||+.++.+++++.|++++.+...     .+++.     ...+.+.++|+.+++++|.++++++++++|+|++++.++
T Consensus        16 ~~iyld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~   95 (398)
T TIGR03392        16 GTVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVA   95 (398)
T ss_pred             CeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHH
Confidence            46999999999999999999877532     11111     234567899999999999965556999999999999988


Q ss_pred             hcc----CCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcc
Q 015729           78 TNT----LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATG  151 (401)
Q Consensus        78 ~~~----~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG  151 (401)
                      .++    +++||+|++++++|++..  |...++..|++++.++.+.++.+|++++++++++    +++++++++++|+||
T Consensus        96 ~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~----~t~lv~i~~~~n~tG  171 (398)
T TIGR03392        96 QSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTP----RTRILALGQMSNVTG  171 (398)
T ss_pred             HHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhcc----CceEEEEECcccccc
Confidence            776    589999999999998854  5567788999999999987777899999999974    569999999999999


Q ss_pred             cccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccc
Q 015729          152 VTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF  231 (401)
Q Consensus       152 ~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~  231 (401)
                      .+.|+++|.++|++  +|+++++|++|+.+..+++....++|++++|+||.+ ||.|+|+++++++.++.+.+.......
T Consensus       172 ~~~~~~~i~~~~~~--~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~~~~~~~~~  248 (398)
T TIGR03392       172 GCPDLARAITLAHQ--YGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLY-GPTGIGVLYGKTELLEAMPPWQGGGKM  248 (398)
T ss_pred             ccCCHHHHHHHHHH--cCCEEEEEhhhhcCCCCCChhhcCCCEEEEeccccc-CCCceEEEEEcHHHHhhCCCeecCCce
Confidence            99999999999999  999999999999888888877788999999999955 788999999999988877543211100


Q ss_pred             --------cchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 015729          232 --------FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE  302 (401)
Q Consensus       232 --------~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~  302 (401)
                              +.......+++.|     |++...++++.++++++.+.|++++.++..++++++++.|.++ |+.+....  
T Consensus       249 ~~~~~~~~~~~~~~~~~~e~G-----T~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~--  321 (398)
T TIGR03392       249 LSHVSFDGFIPQAVPHRFEAG-----TPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCP--  321 (398)
T ss_pred             EeeccccccccCCChhhccCC-----CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC--
Confidence                    0111223455555     5999999999999999988888889999999999999999887 77765432  


Q ss_pred             cCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC--------CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV--------AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~--------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                        ...+++|.++ +.+..++.+.|.++ ||.++.|..+.        .++++|+|++.++|++|+++++++|+++++.+
T Consensus       322 --~~~i~~~~~~-~~~~~~l~~~L~~~-gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~  396 (398)
T TIGR03392       322 --GSSLLAFDFA-GVHHSDLAALLAES-GIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALELL  396 (398)
T ss_pred             --CCcEEEEEeC-CcCHHHHHHHHHhC-CEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence              2346777774 56778899998765 99999886531        24689999999999999999999999988754

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=100.00  E-value=2.7e-39  Score=309.40  Aligned_cols=348  Identities=17%  Similarity=0.205  Sum_probs=283.0

Q ss_pred             CCcccccCCCcCChHHHHHHHccCcCC-----CCC-----ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 015729            8 GKNHLFVPGPVHIPDQVIRAMNRNNED-----YRS-----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL   77 (401)
Q Consensus         8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~-----~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~   77 (401)
                      +..||+.++.++.++.|++++.+....     +++     ....+.+.++|+.+++++|.++++++++++|+|++++.++
T Consensus        19 ~~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~   98 (401)
T PRK10874         19 AGVYLDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVA   98 (401)
T ss_pred             ceEEEeCCcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHH
Confidence            579999999999999999999875421     111     2245668899999999999955556999999999999988


Q ss_pred             hcc----CCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcc
Q 015729           78 TNT----LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATG  151 (401)
Q Consensus        78 ~~~----~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG  151 (401)
                      .++    +++||+|++++++|++..  |...++..|++++.++.+.++.+|++++++.+++    +++++++++++|+||
T Consensus        99 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~----~t~lv~i~~~~n~tG  174 (401)
T PRK10874         99 QSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITP----RTRILALGQMSNVTG  174 (401)
T ss_pred             HHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCc----CcEEEEEeCCccccc
Confidence            776    579999999999998864  6667788999999999988778899999999974    569999999999999


Q ss_pred             cccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccc
Q 015729          152 VTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF  231 (401)
Q Consensus       152 ~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~  231 (401)
                      .+.|+++|.++|++  +|+++|+|++|+.+..+.+....++|++++|+||.+ ||.|+|+++++++.++.+.+.......
T Consensus       175 ~~~~~~~i~~l~~~--~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~~~~~~~~~  251 (401)
T PRK10874        175 GCPDLARAITLAHQ--AGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLY-GPTGIGVLYGKSELLEAMSPWQGGGKM  251 (401)
T ss_pred             CcCCHHHHHHHHHH--cCCEEEEECCcccccccCCchhcCCCEEEEeccccc-CCCccEEEEEchHHHhcCCCeecCCcc
Confidence            99999999999999  999999999999888888887788999999999955 788999999999988876543211110


Q ss_pred             --------cchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 015729          232 --------FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE  302 (401)
Q Consensus       232 --------~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~  302 (401)
                              +.......+++.|     |++...++++.+|++.+.+.|.+++.++..++++++++.|+++ |+.+..+.  
T Consensus       252 ~~~~~~~~~~~~~~~~~~e~G-----t~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~--  324 (401)
T PRK10874        252 LTEVSFDGFTPQSAPWRFEAG-----TPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGFRSFRCQ--  324 (401)
T ss_pred             eEeeccCccCCCCChhhccCC-----CcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC--
Confidence                    0011122345545     5999999999999999988888888999999999999999987 87765432  


Q ss_pred             cCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC--------CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV--------AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~--------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                        ...+++|.+ ++.+..++.+.|.++ ||.++.|..+.        ..+++|+|+..++|++|+|+++++|+++++.+
T Consensus       325 --~~~i~~~~~-~~~~~~~~~~~L~~~-gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~~  399 (401)
T PRK10874        325 --DSSLLAFDF-AGVHHSDLVTLLAEY-GIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALELL  399 (401)
T ss_pred             --CCcEEEEEE-CCcCHHHHHHHHHHC-CcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence              224667777 456778898888765 99999876432        14689999999999999999999999988753

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=100.00  E-value=1.5e-39  Score=311.54  Aligned_cols=348  Identities=18%  Similarity=0.189  Sum_probs=281.7

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCC-----CCC-----ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNED-----YRS-----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~-----~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      ..||+.++.+++++.|++++.++...     +.+     ....+...++|+.+++++|..+++++++++|+|++++.++.
T Consensus        24 ~iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~  103 (406)
T PRK09295         24 LAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVAN  103 (406)
T ss_pred             eEEEeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHH
Confidence            59999999999999999998774421     111     12345688999999999998544569999999999998876


Q ss_pred             c----cCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccc
Q 015729           79 N----TLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV  152 (401)
Q Consensus        79 ~----~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~  152 (401)
                      +    .+++||+|+++.++|++..  |...++..|++++.++.+.++.+|++++++++++    +++++++++++|+||.
T Consensus       104 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~----~t~lv~l~~~~n~tG~  179 (406)
T PRK09295        104 SWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDE----RTRLLAITHVSNVLGT  179 (406)
T ss_pred             HhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCC----CcEEEEEecchhcccc
Confidence            5    5689999999999988764  5667788899999999988888999999999874    5699999999999999


Q ss_pred             ccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCcc--
Q 015729          153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV--  230 (401)
Q Consensus       153 ~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~--  230 (401)
                      +.|+++|.++|++  +|+++++|++|+.|..+++...+++|++++|+||. .||.|+|+++++++..+.+.+......  
T Consensus       180 ~~~~~~i~~~~~~--~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~-~gp~G~G~l~~~~~~~~~~~~~~~g~~~~  256 (406)
T PRK09295        180 ENPLAEMIALAHQ--HGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKL-YGPTGIGILYVKEALLQEMPPWEGGGSMI  256 (406)
T ss_pred             cCCHHHHHHHHHH--cCCEEEEEcccccCccccCchhcCCCEEEeehhhc-cCCCCcEEEEEchHhHhhCCCcccCCcee
Confidence            9999999999999  99999999999999888888888999999999995 478999999999998777654322110  


Q ss_pred             -------ccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 015729          231 -------FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE  302 (401)
Q Consensus       231 -------~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~  302 (401)
                             ...+.....+++.|     |++...++++.+|++.+.+.|++++.++..++.+++++.|.++ |+++..+.  
T Consensus       257 ~~~~~~~~~~~~~~~~r~e~G-----T~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~--  329 (406)
T PRK09295        257 ATVSLTEGTTWAKAPWRFEAG-----TPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ--  329 (406)
T ss_pred             eeeecCCccccCCchhhcCCC-----CccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC--
Confidence                   01111222445555     5999999999999999998899999999999999999999887 78777642  


Q ss_pred             cCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC--------CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV--------AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~--------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                       ....++.|.+| +.+..++.+.|. ++||.++.|..+.        .++.+|+|++.++|++|+|+++++|+++..-+
T Consensus       330 -~~~~iv~~~~~-~~~~~~~~~~L~-~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~~~  405 (406)
T PRK09295        330 -NRLGVIAFNLG-KHHAYDVGSFLD-NYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHRLL  405 (406)
T ss_pred             -CCceEEEEEEC-CcCHHHHHHHHH-hCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHHHHh
Confidence             12357778875 456778888885 4599998875431        13579999999999999999999999876533

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=100.00  E-value=2e-39  Score=312.17  Aligned_cols=352  Identities=18%  Similarity=0.200  Sum_probs=285.2

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCC-----CC-----ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDY-----RS-----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~-----~~-----~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      ..||+.+++.+.++.|++++.++....     ..     ....+.+.++|+.+++++|.++++++++++|+|++++.++.
T Consensus        33 ~iyLd~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~  112 (424)
T PLN02855         33 LVYLDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLVAY  112 (424)
T ss_pred             eEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHH
Confidence            599999999999999999987743211     11     12334578999999999999755569999999999998876


Q ss_pred             c----cCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccc
Q 015729           79 N----TLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV  152 (401)
Q Consensus        79 ~----~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~  152 (401)
                      +    .+++||+|+++.++|++..  |..+++..|++++.++.+.++.+|++++++.+++    +++++++++++|+||.
T Consensus       113 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~----~t~lv~i~~~~n~tG~  188 (424)
T PLN02855        113 TWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSE----KTKLVATHHVSNVLGS  188 (424)
T ss_pred             HhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhcc----CceEEEEeCccccccc
Confidence            5    4689999999999988764  6667788899999999887777999999999974    6799999999999999


Q ss_pred             ccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCcc--
Q 015729          153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV--  230 (401)
Q Consensus       153 ~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~--  230 (401)
                      +.|+++|.++|++  +|+++++|++|+.+..+++..++++|++++|+|| +.||.|+|+++++++.++++.+......  
T Consensus       189 ~~~~~~I~~l~~~--~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~G~G~l~~~~~~~~~~~p~~~g~~~~  265 (424)
T PLN02855        189 ILPVEDIVHWAHA--VGAKVLVDACQSVPHMPVDVQTLGADFLVASSHK-MCGPTGIGFLWGKSDLLESMPPFLGGGEMI  265 (424)
T ss_pred             cCCHHHHHHHHHH--cCCEEEEEhhhhcCCcCCCchhcCCCEEEeeccc-ccCCCccEEEEEchhhhhcCCCEecCCCce
Confidence            9999999999999  9999999999999888888888899999999999 4578899999999998887754422110  


Q ss_pred             ---ccc---hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCC--
Q 015729          231 ---FFD---WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKE--  301 (401)
Q Consensus       231 ---~~~---~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~--  301 (401)
                         +.+   +.....+++.|     |+++..++++.++++++.+.|++++.++..++.+++++.|+++ |+++..+.+  
T Consensus       266 ~~~~~~~~~~~~~~~r~e~G-----T~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~  340 (424)
T PLN02855        266 SDVFLDHSTYAPPPSRFEAG-----TPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSE  340 (424)
T ss_pred             eeeecCccccCCChhhccCC-----ChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccc
Confidence               001   11112445555     5999999999999999988899999999999999999999887 888876432  


Q ss_pred             ccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC--------CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV--------AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~--------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ......++.|.+| +.+..++.+.|.+++||.++.|..+.        ....+|+|++.++|++|+|+++++|+++++.+
T Consensus       341 ~~~r~~~v~~~~~-~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~  419 (424)
T PLN02855        341 GVGRAALCAFNVE-GIHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFF  419 (424)
T ss_pred             ccCcccEEEEEEC-CcCHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHH
Confidence            1123457778884 45778899999876799998775321        13579999999999999999999999988653

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=100.00  E-value=3e-38  Score=302.66  Aligned_cols=352  Identities=18%  Similarity=0.214  Sum_probs=280.3

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCC-----CCC-----ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNED-----YRS-----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~-----~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      ..||+.++.+++++.+++++.+....     +.+     ....+.+.++++.+++++|.++++++++++|+|+++..++.
T Consensus        19 ~~yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~   98 (403)
T TIGR01979        19 LVYLDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAY   98 (403)
T ss_pred             eEEEeCccccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHH
Confidence            49999999999999999998764321     111     12345678999999999999855569999999999998876


Q ss_pred             cc----CCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccc
Q 015729           79 NT----LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV  152 (401)
Q Consensus        79 ~~----~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~  152 (401)
                      ++    +++||+|++++++|++..  |...++..|++++.++.+.++.+|++++++.+++    +++++++++++|+||.
T Consensus        99 ~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~----~~~lv~~~~~~~~tG~  174 (403)
T TIGR01979        99 SWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTE----KTKLVAITHVSNVLGT  174 (403)
T ss_pred             HhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhcc----CCeEEEEEcccccccc
Confidence            53    688999999999988865  5567778899999999988888999999999974    5799999999999999


Q ss_pred             ccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccc-
Q 015729          153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF-  231 (401)
Q Consensus       153 ~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~-  231 (401)
                      +.|+++|.++|++  +|+++|+|++|+.+..+++....++|++++|+||++ |+.|+|+++++++..+.+.+....... 
T Consensus       175 ~~~~~~i~~~~~~--~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~-gp~G~g~l~~~~~~~~~~~~~~~g~~~~  251 (403)
T TIGR01979       175 VNPVEEIAKLAHQ--VGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMY-GPTGIGVLYGKEELLEQMPPFLGGGEMI  251 (403)
T ss_pred             cCCHHHHHHHHHH--cCCEEEEEchhhcCccccCccccCCCEEEEeccccc-CCCCceEEEEchHHHhcCCCeecCCCce
Confidence            9999999999999  999999999999998888888889999999999976 688999999999987776543211000 


Q ss_pred             ----c---chHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCcc
Q 015729          232 ----F---DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEW  303 (401)
Q Consensus       232 ----~---~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~  303 (401)
                          .   .+.....+++.|     +++...++++.++++.+.+.|++++.++..++++++++.|+++ |+++..+....
T Consensus       252 ~~~~~~~~~~~~~~~~~~~g-----t~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~  326 (403)
T TIGR01979       252 AEVSFEETTYNEAPHKFEAG-----TPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAE  326 (403)
T ss_pred             eecccCccccCCChhhcCCC-----CccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcc
Confidence                0   000111223333     5888899999999999888888999999999999999999987 88887643222


Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--------CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          304 FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--------VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~--------~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      ....++.|.++ +.+..++.+.|.++ ||.++.|..+        ..++++||++..++|++|+++++++|+++++.+|
T Consensus       327 ~~~~~v~~~~~-~~~~~~~~~~L~~~-gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~~  403 (403)
T TIGR01979       327 DRGGIISFNVE-GVHPHDVGTILDEE-GIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFFG  403 (403)
T ss_pred             ccCceEEEEeC-CcCHHHHHHHHhhC-CEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHhC
Confidence            23456777774 45677888888755 9999876421        1246899999989999999999999999988765

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=100.00  E-value=1.4e-38  Score=300.67  Aligned_cols=343  Identities=20%  Similarity=0.204  Sum_probs=272.4

Q ss_pred             ccccCCCcCChHH-HHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhcCCCCceEEec-CChhHHHHHHHhccCCCCCe
Q 015729           11 HLFVPGPVHIPDQ-VIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP-TTGTGAWESALTNTLSPGDR   86 (401)
Q Consensus        11 ~~~~~~p~~~~~~-v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~-~g~t~a~~~~~~~~~~~gd~   86 (401)
                      ++|.|||..+++. |++++......  |+++.+.+.+.++++.+++++|.+++++++++ +|+|.+++.++.+++++++.
T Consensus        14 ~~f~~Gp~~~~~~~v~~a~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~   93 (378)
T PRK03080         14 PRFSSGPCKKRPGWQLEALADALLGRSHRQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLGARRV   93 (378)
T ss_pred             CCcCCCCcCCChHHHHHHHHhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCCCCcc
Confidence            5689999999999 99999986654  88888999999999999999998655457776 59999999999998874333


Q ss_pred             EEEEcCCcchHHHHH-HHHHcCC-cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhh
Q 015729           87 IISFLIGQFSLLWID-QQQRLNF-NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLD  164 (401)
Q Consensus        87 vl~~~~~~~~~~~~~-~~~~~g~-~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~  164 (401)
                      .++ .++.|+..|.. .+++.|+ +++.++.+.+..+|+++++    .     ++.+.++|.+|.||.+.|+++|.+  +
T Consensus        94 ~vi-~~g~f~~~~~~~~~~~~g~~~v~~~~~~~g~~~d~~~i~----~-----~~~V~~~h~~t~tG~~~pi~~I~~--~  161 (378)
T PRK03080         94 DHL-AWESFGSKWATDVVKQLKLEDPRVLEADYGSLPDLSAVD----F-----DRDVVFTWNGTTTGVRVPVARWIG--A  161 (378)
T ss_pred             eEE-EeCHHHHHHHHHHHhhcCCCCceEeccCCCCCCCHhhcC----C-----CCCEEEEecCCccceeccchhhcc--c
Confidence            333 35677777765 4467899 9999998877777776532    1     367899999999999999999988  6


Q ss_pred             hcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCC---ccccchHH---H-
Q 015729          165 EYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV---RVFFDWKD---Y-  237 (401)
Q Consensus       165 ~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~---~~~~~~~~---~-  237 (401)
                      +  +|+++++|++|++|..++|.++  +|++++|+|||+++|+|+|+++++++.++++.+....   ..++++..   . 
T Consensus       162 ~--~g~~~vVDa~qs~G~~pidv~~--iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  237 (378)
T PRK03080        162 D--REGLTICDATSAAFALPLDWSK--LDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPIPKFFRLTKGGKAI  237 (378)
T ss_pred             c--CCCeEEEecccccccCCCCHHH--CcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCCchhheeccchHHh
Confidence            6  8999999999999999999886  7999999999999899999999999999887654321   12333333   1 


Q ss_pred             HHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHcC-CccccCCCccCCceeEEEEcCC
Q 015729          238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWG-LKNCTQKEEWFSDTVTAVIVPS  315 (401)
Q Consensus       238 ~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~  315 (401)
                      ...++.+  +++|+++..++++.++++++.+. |++++.++.+++.+++++.|++++ +.+....+..+++.++.|.+|+
T Consensus       238 ~~~~~~~--t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~  315 (378)
T PRK03080        238 ENSFKGQ--TINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVD  315 (378)
T ss_pred             hhhhcCC--cccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCC
Confidence            2234444  37789999999999999999997 799999999999999999999984 6666433333455678888865


Q ss_pred             ---CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          316 ---HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       316 ---~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                         +.+ .++...|.++ ++.+..|.....++.+|+|++.+++++|+++++++|+++++++
T Consensus       316 ~~~~~~-~~~~~~l~~~-~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~~~  374 (378)
T PRK03080        316 AQAAVD-AAAVAKLLRE-NGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFERL  374 (378)
T ss_pred             chHHHH-HHHHHHHHHc-CCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence               333 3456666666 7887766433235789999999999999999999999988765

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=100.00  E-value=4.3e-38  Score=294.16  Aligned_cols=339  Identities=15%  Similarity=0.142  Sum_probs=272.7

Q ss_pred             CcccccCCCcCChHHHHHHHccCc------------CCCCCccHHHHHHHHHHHHHHHhcCCCCceE-EecCChhHHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNN------------EDYRSPAVPALTKTLLEDIKKIFKTTSGTPF-LIPTTGTGAWES   75 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i-~~~~g~t~a~~~   75 (401)
                      +.+||.|||+.+++.|++++....            ..|+++.+.+.+.++++.++++++.+.++++ +++++||.|+++
T Consensus         3 ~~~l~~pGP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea   82 (360)
T PRK05355          3 RVYNFSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAM   82 (360)
T ss_pred             ceeeccCCCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHH
Confidence            578999999999999999998863            3578888999999999999999998543334 556888999999


Q ss_pred             HHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCC-CCCCChHHHHH-HHhccCCCCceEEEEEecCCCcccc
Q 015729           76 ALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLAS-KLAADTAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        76 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~le~-~~~~~~~~~~~~i~~~~~~n~tG~~  153 (401)
                      ++.+++.+|++++++..|.|+..|...+++.|.. ..+..+. .+..+..++++ .+++    ++++|.++|.+|+||.+
T Consensus        83 ~~~nl~~~g~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~~----~~~~V~~th~eTstGv~  157 (360)
T PRK05355         83 VPMNLLGGGKKADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLSD----DAAYVHYTSNETIDGTE  157 (360)
T ss_pred             HHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCc-eEEecccccCCCCCCChhhccCCC----CCCEEEEccCCCcceEe
Confidence            9999999999999999999999999999999975 6666654 33444445555 6653    56999999999999999


Q ss_pred             c-chHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCcccc
Q 015729          154 N-NLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF  232 (401)
Q Consensus       154 ~-~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~  232 (401)
                      . |+++|        +|+++++|+++++|..++|.+++  |++++|+||++ ||+|+|++++++++++++.+..  ..++
T Consensus       158 ~~~i~~i--------~g~l~vVDavss~g~~~idv~~~--d~~~~ssqK~l-gP~Glg~l~~s~~~l~~~~~~~--~~~~  224 (360)
T PRK05355        158 FHELPDT--------GDVPLVADMSSDILSRPIDVSKF--GLIYAGAQKNI-GPAGLTIVIVREDLLGRALPSI--PSML  224 (360)
T ss_pred             cCccccc--------CCCcEEEEcCccccCccCCHHHc--cEEEEeccccc-cCCceEEEEECHHHHhhcccCC--ChHH
Confidence            8 66655        68999999999999999999875  69999999988 5999999999999998876531  2344


Q ss_pred             chHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEE
Q 015729          233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAV  311 (401)
Q Consensus       233 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~  311 (401)
                      ++.....    ...+++||++..++++.++++++.++ |++++.++.++++++++++|+++++.....++..+++.++.|
T Consensus       225 ~~~~~~~----~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf  300 (360)
T PRK05355        225 DYKTHAD----NDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPF  300 (360)
T ss_pred             HHHHHHh----cCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEE
Confidence            4433221    22356899999999999999999999 799999999999999999999987422212223367778889


Q ss_pred             EcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          312 IVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       312 ~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .+|++.+..++...+.++ |+.+..+..  ..+.+|+|++.++|++|||+++++|+++++.
T Consensus       301 ~~~~~~~~~~~~~~~~~~-Gi~~~~~~~--~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~  358 (360)
T PRK05355        301 TLADEELDKKFLAEAKAA-GLVGLKGHR--SVGGMRASIYNAMPLEGVQALVDFMKEFERR  358 (360)
T ss_pred             EcCChHHHHHHHHHHHHC-CCcccCCCC--ccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            987654445665666544 888765543  2468999999999999999999999998764

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=100.00  E-value=1.8e-37  Score=294.77  Aligned_cols=345  Identities=19%  Similarity=0.206  Sum_probs=273.3

Q ss_pred             cccccCC-CcCChHHHHHHHccCcCC-----CCC-cc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729           10 NHLFVPG-PVHIPDQVIRAMNRNNED-----YRS-PA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus        10 ~~~~~~~-p~~~~~~v~~a~~~~~~~-----~~~-~~----~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      +||+.++ +.+.|+.+++++.+....     .+. +.    ......++++.+++++|.+..+.+++++|+++++..++.
T Consensus         1 ~yld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~   80 (376)
T TIGR01977         1 IYFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALK   80 (376)
T ss_pred             CCccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHH
Confidence            4777765 447778888887663221     111 11    236688999999999998765569999999999999998


Q ss_pred             ccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccch
Q 015729           79 NTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL  156 (401)
Q Consensus        79 ~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l  156 (401)
                      +++++||+|++..++|++..  +...++..|++++.++.+.++.+|++++++++++    +++++++++++||||.+.|+
T Consensus        81 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~----~~~~v~~~~~~n~tG~~~~~  156 (376)
T TIGR01977        81 GLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKT----NTKLIVVSHASNVTGTILPI  156 (376)
T ss_pred             hccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCC----CCeEEEEECCCCCccccCCH
Confidence            88999999999988887765  4456777799999999888788899999999863    57999999999999999999


Q ss_pred             HHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCC-----ccc
Q 015729          157 SKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV-----RVF  231 (401)
Q Consensus       157 ~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~-----~~~  231 (401)
                      ++|.++|++  +|+++|+|++|++|..+++....++|++++|+|||+++|.|+|+++++++.  .+.+....     ..+
T Consensus       157 ~~i~~l~~~--~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~--~~~~~~~~~~~~~~~~  232 (376)
T TIGR01977       157 EEIGELAQE--NGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGI--KLKPLKSGGTGSHSAL  232 (376)
T ss_pred             HHHHHHHHH--cCCEEEEEhhhccCccCCCchhcCCCEEEecccccccCCCCceEEEEcCCc--CcCceecCCCcccccc
Confidence            999999999  999999999999999998888889999999999999989999999988875  12221111     001


Q ss_pred             cch-HHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeE
Q 015729          232 FDW-KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVT  309 (401)
Q Consensus       232 ~~~-~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~  309 (401)
                      ++. .....+++.|     |++...++++.++++++.+.|++++.++.+++++++++.|++. |+++..+.+......++
T Consensus       233 ~~~~~~~~~r~~~~-----t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v  307 (376)
T TIGR01977       233 IDQPSELPDRFESG-----TLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVV  307 (376)
T ss_pred             ccccccchhhccCC-----CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeE
Confidence            110 0111234444     5888889999999999999999999999999999999999976 77776543222334577


Q ss_pred             EEEcCCCCCHHHHHHHHHhhCCeEEccCCCC----------CCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          310 AVIVPSHINSSEIVRRAWQRYNLSLGLGLNK----------VAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       310 ~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~----------~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      +|.++ +.+..++.+.|.+++||.+..|..+          ...+.+|+++..++|++|+++++++|++
T Consensus       308 ~~~~~-~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       308 SFTVE-GIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE  375 (376)
T ss_pred             EEEEC-CCCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence            78884 5578899999987779999887532          1346899999999999999999999975

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=100.00  E-value=3.7e-37  Score=278.24  Aligned_cols=342  Identities=17%  Similarity=0.188  Sum_probs=279.1

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCC---------CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDY---------RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN   79 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~---------~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~   79 (401)
                      ..|++....+++.++|++++..+....         .+.......++.|+.+++++|.++ +.|+||+|+|++++.++.+
T Consensus         2 miYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~-~eIiFTSG~TEsnNlaI~g   80 (386)
T COG1104           2 MIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADP-EEIIFTSGATESNNLAIKG   80 (386)
T ss_pred             cccccccccCCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCC-CeEEEecCCcHHHHHHHHh
Confidence            469999999999999999998854332         122345678899999999999988 4599999999999998876


Q ss_pred             c--C----CCCCeEEEEcCCcchHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccc
Q 015729           80 T--L----SPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV  152 (401)
Q Consensus        80 ~--~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~  152 (401)
                      .  .    +.|.+|+++..+|++.. .....+..|.++.+++++.++.+|+++|+++++.    ++.+|.+.+.||.+|+
T Consensus        81 ~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~----~T~LVSim~aNnE~G~  156 (386)
T COG1104          81 AALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRP----DTILVSIMHANNETGT  156 (386)
T ss_pred             hHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCC----CceEEEEEecccCeee
Confidence            2  2    25789999999999987 3333477899999999999999999999999985    4589999999999999


Q ss_pred             ccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCcccc
Q 015729          153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF  232 (401)
Q Consensus       153 ~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~  232 (401)
                      +.|+++|.++|++  +++++++|+++++|-.+++....++|++++|+|| |.||.|+|++++++..  ++.+....+.. 
T Consensus       157 IQpI~ei~~i~k~--~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK-~~GpkGiGaLyv~~~~--~~~p~i~GGgQ-  230 (386)
T COG1104         157 IQPIAEIGEICKE--RGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHK-FGGPKGIGALYVRPGV--RLEPLIHGGGQ-  230 (386)
T ss_pred             cccHHHHHHHHHH--cCCeEEEehhhhcCceeccccccCcceEEeehhh-ccCCCceEEEEECCCC--ccCceeccCcC-
Confidence            9999999999999  9999999999999999999999999999999999 5689999999997764  23322211111 


Q ss_pred             chHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEE
Q 015729          233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTA  310 (401)
Q Consensus       233 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~  310 (401)
                           .+.+..|     |.+..+++++.+|++...++ ++....+..+++++|.+.|.+.  ++.+... +..+.+.++.
T Consensus       231 -----E~g~RsG-----Tenv~~Ivg~~~A~~~a~~~-~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~-~~~rlP~~~~  298 (386)
T COG1104         231 -----ERGLRSG-----TENVPGIVGFGKAAEIAVEE-LEEENARLRKLRDRLEDGLLEIIPDVYLNGD-DEPRLPNILN  298 (386)
T ss_pred             -----CCCCCCC-----CccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcEEEcCC-cccCCCCeEE
Confidence                 0223334     59999999999999987664 6788889999999999999975  4554443 2347788899


Q ss_pred             EEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCC-------------------cEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAG-------------------KVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       311 ~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~-------------------~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      +.+ .+++.+.+...|.. .||.+..|+.|..+                   ..+|||+...+|++|+|++++++.++++
T Consensus       299 ~~f-~gv~gE~ll~~L~~-~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~  376 (386)
T COG1104         299 FSF-PGVEGESLLLALDL-AGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIK  376 (386)
T ss_pred             EEe-CCCcHHHHHHhccc-cCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            999 56788888888854 49999999775433                   3499999999999999999999999998


Q ss_pred             hcCC
Q 015729          372 DVGY  375 (401)
Q Consensus       372 ~~~~  375 (401)
                      .+..
T Consensus       377 ~lr~  380 (386)
T COG1104         377 RLRE  380 (386)
T ss_pred             HHhh
Confidence            7644

>PLN02651 cysteine desulfurase

Probab=100.00  E-value=1.9e-37  Score=292.67  Aligned_cols=326  Identities=15%  Similarity=0.133  Sum_probs=262.8

Q ss_pred             cccccCCCcCChHHHHHHHccCcCCCC----------CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNEDYR----------SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN   79 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~----------~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~   79 (401)
                      .||+.++++++++.|++++.++...+.          +....+.++++++.+++++|.++. .+++++|+|++++.++.+
T Consensus         1 iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~t~~~t~a~~~~l~~   79 (364)
T PLN02651          1 LYLDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPK-EIIFTSGATESNNLAIKG   79 (364)
T ss_pred             CcccCcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCCHHHHHHHHHHH
Confidence            489999999999999999987442211          123356688999999999998754 499999999998877644


Q ss_pred             ----cCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc
Q 015729           80 ----TLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        80 ----~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~  153 (401)
                          +.++||+|+++..+|++..  +.. ....|++++.++.+.++.+|++++++++++    +++++++++++|+||.+
T Consensus        80 ~~~~~~~~g~~vl~~~~~h~s~~~~~~~-~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~----~t~lv~v~~~~n~tG~~  154 (364)
T PLN02651         80 VMHFYKDKKKHVITTQTEHKCVLDSCRH-LQQEGFEVTYLPVKSDGLVDLDELAAAIRP----DTALVSVMAVNNEIGVI  154 (364)
T ss_pred             HHHhccCCCCEEEEcccccHHHHHHHHH-HHhcCCEEEEEccCCCCcCCHHHHHHhcCC----CcEEEEEECCCCCceec
Confidence                3578999999998888764  433 346799999999888788999999999974    56999999999999999


Q ss_pred             cchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccc
Q 015729          154 NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD  233 (401)
Q Consensus       154 ~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~  233 (401)
                      .|+++|.++|++  +|+++++|++|+.|..+++.+++++|++++|+||| +||.|+|+++++++...++.+.......  
T Consensus       155 ~~l~~I~~~~~~--~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~-~gp~G~g~l~v~~~~~~~l~p~~~g~~~--  229 (364)
T PLN02651        155 QPVEEIGELCRE--KKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKI-YGPKGVGALYVRRRPRVRLEPLMSGGGQ--  229 (364)
T ss_pred             ccHHHHHHHHHH--cCCEEEEEcchhhCCcccCcccCCCCEEEechhhh-CCCCceEEEEEcCCCCCCCCccccCCCc--
Confidence            999999999999  99999999999999999999999999999999997 5899999999999876665543221100  


Q ss_pred             hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-c-CCccccCC-CccCCceeEE
Q 015729          234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQK-EEWFSDTVTA  310 (401)
Q Consensus       234 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~-~~~~~~~~~~  310 (401)
                          ...+     ..+|++...++++.++++++.+. .+++.++..++.+++++.|.+ + |+++..+. +..+++.++.
T Consensus       230 ----~~~~-----~~GT~~~~~~~~l~~al~~~~~~-~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~  299 (364)
T PLN02651        230 ----ERGR-----RSGTENTPLVVGLGAACELAMKE-MDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLN  299 (364)
T ss_pred             ----cCCc-----cCCCccHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEE
Confidence                0122     24569999999999999998874 588899999999999999986 4 88888753 2234566888


Q ss_pred             EEcCCCCCHHHHHHHHHhhCCeEEccCCCCCC-------------------CcEEEEeecccCCHHHHH
Q 015729          311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKVA-------------------GKVFRIGHLGHLNELQLL  360 (401)
Q Consensus       311 ~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~-------------------~~~~Ri~~~~~~~~~di~  360 (401)
                      |.++ +.+..++.+.|.+   |.++.|..+..                   .+.+|+|+..++|++|||
T Consensus       300 ~~~~-~~~~~~~~~~L~~---i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did  364 (364)
T PLN02651        300 LSFA-YVEGESLLMGLKE---VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD  364 (364)
T ss_pred             EEeC-CCCHHHHHHHhCC---EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence            8884 6788899999853   88877754311                   257999999999999985

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=100.00  E-value=1.2e-36  Score=284.95  Aligned_cols=341  Identities=17%  Similarity=0.211  Sum_probs=272.1

Q ss_pred             cccCCCcCChHHHHHHHccCc-----CCCCCccHHHHHHHHHHHHHHHhcCCCCceEEec-CChhHHHHHHHhccCCCCC
Q 015729           12 LFVPGPVHIPDQVIRAMNRNN-----EDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP-TTGTGAWESALTNTLSPGD   85 (401)
Q Consensus        12 ~~~~~p~~~~~~v~~a~~~~~-----~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~-~g~t~a~~~~~~~~~~~gd   85 (401)
                      -|+|||+.+++.|++++....     ..|+++.+.+.+.++++.++++++.++++.++|+ +|+|.+++.++.+++.+  
T Consensus         6 ~f~pGP~~~~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~~--   83 (361)
T TIGR01366         6 RFGSGPSKVRLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIEK--   83 (361)
T ss_pred             cccCCCcCCCHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcccc--
Confidence            589999999999999998752     4688999999999999999999998655557774 77999999999888743  


Q ss_pred             eEEEEcCCcchHHHHHHHHHc--CCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHh
Q 015729           86 RIISFLIGQFSLLWIDQQQRL--NFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLL  163 (401)
Q Consensus        86 ~vl~~~~~~~~~~~~~~~~~~--g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~  163 (401)
                      +++++..+.|+..+...+...  +.++..++.+.+..++.+     +.    +++++|.++|.+|.||.+.|+++|   +
T Consensus        84 ~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~lV~~~h~et~tG~~~pi~~I---~  151 (361)
T TIGR01366        84 KSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTADPGSAPEPQ-----AD----PGVDVIAWAHNETSTGVAVPVRRP---E  151 (361)
T ss_pred             cccEEecCHHHHHHHHHHHhhhccCCceEEecCCCCCCCCc-----cC----CCCCEEEEcccCCccceecccccc---c
Confidence            455566688888776666652  237777777655434331     22    478999999999999999999988   4


Q ss_pred             hhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCC----ccccchHHHHH
Q 015729          164 DEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV----RVFFDWKDYIK  239 (401)
Q Consensus       164 ~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~  239 (401)
                      ++  +|+++++|+++++|..++|.++  +|++++|+||++++++|++++++++++++++.+....    ..+.++.....
T Consensus       152 ~~--~g~~~iVDavqs~g~~~idv~~--~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~  227 (361)
T TIGR01366       152 GS--DDALVVIDATSGAGGLPVDIAE--TDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVD  227 (361)
T ss_pred             cc--CCCeEEEEcCccccCCCCCHHH--CCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHh
Confidence            77  9999999999999999999885  8999999999998777888999999999887654322    13445544433


Q ss_pred             H-hhcCCCCCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHcC-CccccCCCccCCceeEEEEcCCC
Q 015729          240 F-YNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWG-LKNCTQKEEWFSDTVTAVIVPSH  316 (401)
Q Consensus       240 ~-~~~g~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~  316 (401)
                      . ++.  .+++|+++..++++.++++++.+. |++.+.++.+++++++++.|.+++ ++++.......+..+..+.++++
T Consensus       228 ~~~~~--~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g  305 (361)
T TIGR01366       228 NSLKN--QTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVDD  305 (361)
T ss_pred             ccccC--CCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECCCc
Confidence            2 223  348899999999999999999988 599999999999999999999985 56554322223444555666788


Q ss_pred             CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          317 INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       317 ~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .+..++...|.++ ||.+.+++....++.+|+|+.+++|++|+++++++|+++++++
T Consensus       306 ~~~~~v~~~L~~~-gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~~  361 (361)
T TIGR01366       306 IDAATVAKILRAN-GIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVERL  361 (361)
T ss_pred             cCHHHHHHHHHHC-CCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhhC
Confidence            8899999999766 9999887655556789999999999999999999999988764

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=100.00  E-value=1e-36  Score=289.51  Aligned_cols=339  Identities=16%  Similarity=0.153  Sum_probs=266.0

Q ss_pred             cccccCCCcCChHHHHHHHccCcCC-----CC----CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNED-----YR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT   80 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~-----~~----~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~   80 (401)
                      .||+.++.+++++.|++++.++...     +.    +....+.++++++.+++++|.++. .+++++|+|++++.++.++
T Consensus         1 ~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~i~~t~~~t~a~~~al~~~   79 (379)
T TIGR03402         1 IYLDNNATTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPD-EIIFTSGGTESDNTAIKSA   79 (379)
T ss_pred             CcCCCcCCCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCcHHHHHHHHHHHH
Confidence            4899999999999999999874321     11    122356688999999999998754 5999999999999888764


Q ss_pred             C---CCCCeEEEEcCCcchHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccch
Q 015729           81 L---SPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL  156 (401)
Q Consensus        81 ~---~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l  156 (401)
                      +   .++|+|++...+|++.. .....+..|++++.++.+.++.+|++++++.+++    +++++++++++|+||.+.|+
T Consensus        80 ~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~----~~~lv~i~~~~n~tG~~~~~  155 (379)
T TIGR03402        80 LAAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITD----DTALVSVMWANNETGTIFPI  155 (379)
T ss_pred             HHhcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCC----CcEEEEEEcccCCeeecccH
Confidence            3   45688888888888765 2234455799999999887788999999999974    56999999999999999999


Q ss_pred             HHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHH
Q 015729          157 SKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKD  236 (401)
Q Consensus       157 ~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~  236 (401)
                      ++|.++|++  +|+++++|++|+.|..+++..+.++|++++|+|| +.||.|+|+++++++.  .+.+..... ..    
T Consensus       156 ~~I~~l~~~--~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K-~~gp~G~g~l~v~~~~--~~~p~~~g~-~~----  225 (379)
T TIGR03402       156 EEIGEIAKE--RGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHK-LHGPKGVGALYIRKGT--RFRPLLRGG-HQ----  225 (379)
T ss_pred             HHHHHHHHH--cCCEEEEECcccccccccCcccCCCCEEEEcHHH-cCCCCceEEEEECCCC--CCCCcccCC-cc----
Confidence            999999999  9999999999999999999988999999999999 6689999999998764  122211100 00    


Q ss_pred             HHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCceeEEEEcC
Q 015729          237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVIVP  314 (401)
Q Consensus       237 ~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~  314 (401)
                       ....+     .+|++...++++.+++++..+ +++...++..++.+++++.|.+ + ++.+..+... +.+.++.+.+ 
T Consensus       226 -~~~~~-----~gt~~~~~~~~l~~al~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~-  296 (379)
T TIGR03402       226 -ERGRR-----AGTENVPGIVGLGKAAELATE-HLEEENTRVRALRDRLEAGLLARIPDARLNGDPTK-RLPNTVNISF-  296 (379)
T ss_pred             -CCCcC-----CCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCcc-CCCCEEEEEe-
Confidence             01122     446999999999999998876 5788888999999999999985 5 7766553322 3334566666 


Q ss_pred             CCCCHHHHHHHHHhhCCeEEccCCCCCC-------------------CcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          315 SHINSSEIVRRAWQRYNLSLGLGLNKVA-------------------GKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       315 ~~~~~~~l~~~L~~~~~i~v~~g~~~~~-------------------~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .+.+..++...|.++ ||.++.|..+..                   .+.+|+|++.++|++|||++++.|+++++++
T Consensus       297 ~~~~~~~~~~~l~~~-gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~  373 (379)
T TIGR03402       297 EYIEGEAILLLLDME-GICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARL  373 (379)
T ss_pred             cCCCHHHHHHhhccC-CEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            356778899888654 999998754321                   2579999999999999999999999988763

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=100.00  E-value=1.3e-36  Score=290.78  Aligned_cols=338  Identities=18%  Similarity=0.205  Sum_probs=266.5

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCC-----CCc----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDY-----RSP----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN   79 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~-----~~~----~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~   79 (401)
                      ..|++.+|++++++.+++++.+.....     ..+    ...+...++++.+++++|.++++ +++++|+++++..++.+
T Consensus        18 ~~yl~~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~-v~~~~~~t~~l~~~~~~   96 (397)
T TIGR01976        18 RVFFDNPAGTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPE-VVFGANATSLTFLLSRA   96 (397)
T ss_pred             eEEecCCccCCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCe-EEEeCCHHHHHHHHHHH
Confidence            499999999999999999887743211     112    23456789999999999987654 99999999998876655


Q ss_pred             ---cCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc
Q 015729           80 ---TLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        80 ---~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~  153 (401)
                         .+++||+|++..++|++..  |...++..|++++.++.++ ++.+|++++++.+++    +++++++++++|+||.+
T Consensus        97 ~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~----~~~lv~i~~~~n~tG~~  172 (397)
T TIGR01976        97 ISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSP----RTRLVAVTAASNTLGSI  172 (397)
T ss_pred             HHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCC----CceEEEEeCCCCCCCcc
Confidence               3689999999999988865  5566788899999999876 567899999999873    56999999999999999


Q ss_pred             cchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccc
Q 015729          154 NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD  233 (401)
Q Consensus       154 ~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~  233 (401)
                      .|+++|.++|++  +|+++++|++|+.+..+++..++++|++++|+||++ |+. +|+++++++.++.+.+.....   .
T Consensus       173 ~~~~~i~~~~~~--~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~-g~~-~G~l~~~~~~~~~l~~~~~~~---~  245 (397)
T TIGR01976       173 VDLAAITELVHA--AGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFF-GPH-MGILWGRPELLMNLPPYKLTF---S  245 (397)
T ss_pred             CCHHHHHHHHHH--cCCEEEEehhhhccccCCCHHHcCCCEEEEechhhc-CCc-eEEEEEcHHHHhhCCCccccC---c
Confidence            999999999999  999999999998887777877889999999999987 454 899999999888776543211   1


Q ss_pred             hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhc--------------HHHHHHHHHHHHHHHHHHHHHc-CCcccc
Q 015729          234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG--------------LENVIERHRRLGKATRLAVEAW-GLKNCT  298 (401)
Q Consensus       234 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g--------------~~~~~~~~~~~~~~l~~~L~~~-g~~~~~  298 (401)
                      +.....+++.|     |++...++++.++++.+.+.|              ++++.++..++.+++++.|+++ ++++..
T Consensus       246 ~~~~~~~~~~g-----t~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~  320 (397)
T TIGR01976       246 YDTGPERFELG-----TPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYG  320 (397)
T ss_pred             cCCCcchhcCC-----CCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence            11122334445     599988999999999987665              5667778888999999999887 477765


Q ss_pred             CC-CccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC-----------CCCcEEEEeecccCCHHHHHHHHHHH
Q 015729          299 QK-EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK-----------VAGKVFRIGHLGHLNELQLLGCLAGV  366 (401)
Q Consensus       299 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~-----------~~~~~~Ri~~~~~~~~~di~~~~~~i  366 (401)
                      +. +....+ ++.+.+ .+.+..++.++|.++ ||.++.+..+           ..++++|||++.++|++|+++++++|
T Consensus       321 ~~~~~~~~~-~~~~~~-~~~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       321 VARLAARVP-TVSFTV-HGLPPQRVVRRLADQ-GIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL  397 (397)
T ss_pred             CCCccCCCc-eEEEEe-CCcCHHHHHHHHHHC-CeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence            42 222344 566766 445678899999766 9999876332           13468999999999999999999864

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=100.00  E-value=2.2e-36  Score=280.70  Aligned_cols=339  Identities=19%  Similarity=0.210  Sum_probs=280.1

Q ss_pred             cccCCCcCChHH-HHHHHccCc--CCCCCccHHHHHHHHHHHHHHHhcCCCC-ceEEecCChhHHHHHHHhccC-CCCCe
Q 015729           12 LFVPGPVHIPDQ-VIRAMNRNN--EDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGTGAWESALTNTL-SPGDR   86 (401)
Q Consensus        12 ~~~~~p~~~~~~-v~~a~~~~~--~~~~~~~~~~~~~~l~~~la~~~g~~~~-~~i~~~~g~t~a~~~~~~~~~-~~gd~   86 (401)
                      .|+|||+.+.|. .++++++..  .+|+++.+.+++.++++.++++++.+.. +.+++++|||.++++++.+++ ++|++
T Consensus         6 ~f~~gp~~~~~~~~~~~~~~~~~~~~HRs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~   85 (374)
T TIGR01365         6 CFSSGPCAKRPGWSIEELKNAPLGRSHRSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVD   85 (374)
T ss_pred             CcCCCccCCCchhhHHHHhhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCe
Confidence            589999999999 788887632  4589999999999999999999998543 335669999999999999999 58889


Q ss_pred             EEEEcCCcchHHHH-HHHHHcCC-cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhh
Q 015729           87 IISFLIGQFSLLWI-DQQQRLNF-NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLD  164 (401)
Q Consensus        87 vl~~~~~~~~~~~~-~~~~~~g~-~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~  164 (401)
                      +++.  +.|+..|. ++++..|+ ++..++.+.+..+|+++++.  +       +.++++|..+.||+..|++++.   +
T Consensus        86 vLv~--g~FG~r~~~eia~~~g~~~v~~l~~~~g~~~~~~~ve~--~-------~~v~~vhnETSTGv~npv~~i~---~  151 (374)
T TIGR01365        86 VLAW--ESFGKGWVTDVTKQLKLPDVRVLEAEYGKLPDLKKVDF--K-------NDVVFTWNGTTSGVRVPNGDFI---P  151 (374)
T ss_pred             EEEE--CHHHHHHHHHHHHhcCCCCcEEEcCCCCCCCCHHHcCC--C-------CCEEEecCCCchheeccccccc---c
Confidence            8875  68999888 99999999 58888888888889998872  1       2367999999999999997655   3


Q ss_pred             hcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHH-----
Q 015729          165 EYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIK-----  239 (401)
Q Consensus       165 ~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  239 (401)
                      +. +++++++|+++++|+.+++.++  +|++++|++|.|++|+|+++++++++.+++......   ++++..+.+     
T Consensus       152 ~~-~~~lliVDavSs~g~~~l~~d~--iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~---y~~~~~~~~~~~~~  225 (374)
T TIGR01365       152 AD-REGLTICDATSAAFAQDLDYHK--LDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTP---AWPLPKIFRLTKGG  225 (374)
T ss_pred             cc-CCCcEEEEccchhcCCCCChhH--CcEEEEechhccCCCCceEEEEECHHHHHHHhhcCC---CCCChhhhcccccc
Confidence            21 4789999999999999998884  999999999999999999999999999988664321   222222211     


Q ss_pred             ----HhhcCCCCCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHcC-CccccCCCccCCceeEEEEc
Q 015729          240 ----FYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWG-LKNCTQKEEWFSDTVTAVIV  313 (401)
Q Consensus       240 ----~~~~g~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~  313 (401)
                          ....+ ++++||++..+.++..+++++.++ |+++..++++++++.++++++++| +.++...+..++++++.+.+
T Consensus       226 ~~~~~~~~~-~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~  304 (374)
T TIGR01365       226 KLNKKIFEG-STINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKV  304 (374)
T ss_pred             chhhhhhcC-CCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEe
Confidence                12223 578999999999999999988886 799999999999999999999998 67666434457888888888


Q ss_pred             CCC-C-----C-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          314 PSH-I-----N-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       314 ~~~-~-----~-----~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      |++ +     +     ..++.+.|.++ ||.+.+|.....++.|||++.+.++.+|++.+++.|+.+..+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~~~~  373 (374)
T TIGR01365       305 VDPAIDALDEDAQADFAKELISTLEKE-GVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWAFAL  373 (374)
T ss_pred             CCccccccccchhhHHHHHHHHHHHHC-CEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHHHhc
Confidence            554 4     2     67888888876 999999988777889999999999999999999999887654

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK02948 cysteine desulfurase; Provisional

Probab=100.00  E-value=2.5e-36  Score=287.17  Aligned_cols=342  Identities=15%  Similarity=0.155  Sum_probs=268.8

Q ss_pred             cccccCCCcCChHHHHHHHccCcCC-----CC----CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNED-----YR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT   80 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~-----~~----~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~   80 (401)
                      .||+.++.+++++.|++++.+....     +.    +....+.++++++.+++++|.++. .+++++|+|+++..++.++
T Consensus         2 ~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~i~~~~g~t~a~~~~~~~~   80 (381)
T PRK02948          2 IYLDYAATTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQ-GIYFTSGGTESNYLAIQSL   80 (381)
T ss_pred             EeccCCCCCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCcHHHHHHHHHHHH
Confidence            6899999999999999999764321     11    122346688999999999998754 4999999999999887665


Q ss_pred             C----CCCCeEEEEcCCcchHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc
Q 015729           81 L----SPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN  155 (401)
Q Consensus        81 ~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~  155 (401)
                      +    ++||+|++...+|+++. +...++..|++++.++.+.++.+|++++++.+++    +++++++++++||||.+.|
T Consensus        81 ~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~----~~~lv~~~~~~n~tG~~~~  156 (381)
T PRK02948         81 LNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAITP----DTVLASIQHANSEIGTIQP  156 (381)
T ss_pred             HHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCC----CCEEEEEECCcCCcEeehh
Confidence            4    57899999888888765 3356677899999999888788999999998864    5689999999999999999


Q ss_pred             hHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchH
Q 015729          156 LSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK  235 (401)
Q Consensus       156 l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~  235 (401)
                      +++|.++|++  +|+++|+|++|++|..+++..++++|++++|+||++ |++|+|+++++++.  .+.......      
T Consensus       157 ~~~I~~l~~~--~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~-gp~G~G~l~~~~~~--~~~~~~~~~------  225 (381)
T PRK02948        157 IAEIGALLKK--YNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIY-GPKGVGAVYINPQV--RWKPVFPGT------  225 (381)
T ss_pred             HHHHHHHHHH--cCCEEEEEChhhccccccCcccCCCCEEEecHHhcC-CCCcEEEEEEcCCC--CCCCcccCC------
Confidence            9999999999  999999999999998888888889999999999976 69999999998774  111110000      


Q ss_pred             HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCC-CccCCceeEEEEcC
Q 015729          236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK-EEWFSDTVTAVIVP  314 (401)
Q Consensus       236 ~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~~~  314 (401)
                           ...+.+.++|++...++++.++++...+ ++++..++..++++++++.|+++|+++.... .+...+.++.+.+ 
T Consensus       226 -----~~~~~~~~~t~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~-  298 (381)
T PRK02948        226 -----THEKGFRPGTVNVPGIAAFLTAAENILK-NMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTI-  298 (381)
T ss_pred             -----CCCCCcCCCCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEe-
Confidence                 0012234567999999999999987654 4788899999999999999999887655322 2223344566666 


Q ss_pred             CCCCHHHHHHHHHhhCCeEEccCCCCC-------------------CCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          315 SHINSSEIVRRAWQRYNLSLGLGLNKV-------------------AGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       315 ~~~~~~~l~~~L~~~~~i~v~~g~~~~-------------------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                      .+.+..++...|.++ ||.++.|..+.                   .++.+||++..++|++|+|+++++|+++++++..
T Consensus       299 ~~~~~~~~~~~l~~~-gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~  377 (381)
T PRK02948        299 KGIEGQYTMLECNRR-GIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQFYR  377 (381)
T ss_pred             CCCCHHHHHHhcccC-CEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            455677888887554 99999875421                   1357999999999999999999999999887654

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=100.00  E-value=2.2e-36  Score=287.00  Aligned_cols=341  Identities=19%  Similarity=0.217  Sum_probs=272.7

Q ss_pred             cccccCCCcCChHHHHHHHccCcCC-----CC-----CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNED-----YR-----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN   79 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~-----~~-----~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~   79 (401)
                      .||..++-+++++.+++++.++...     ++     +....+.+.++++.+++++|.+.++.+++++|+|+|+..++.+
T Consensus         1 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~   80 (373)
T cd06453           1 VYLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYG   80 (373)
T ss_pred             CcccCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHH
Confidence            4888999999999999999875421     11     1224566889999999999998455699999999999999988


Q ss_pred             cCC---CCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccccc
Q 015729           80 TLS---PGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN  154 (401)
Q Consensus        80 ~~~---~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~  154 (401)
                      +..   +||+|++++++|++..  +...++..|++++.++.+.++.+|++++++.+++    +++++++++++||||.+.
T Consensus        81 l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~----~~~~v~~~~~~~~tG~~~  156 (373)
T cd06453          81 LGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTE----RTKLVAVTHVSNVLGTIN  156 (373)
T ss_pred             hhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcC----CceEEEEeCcccccCCcC
Confidence            776   8999999999888864  4456667899999999987788999999999974    569999999999999999


Q ss_pred             chHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCcccc--
Q 015729          155 NLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF--  232 (401)
Q Consensus       155 ~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~--  232 (401)
                      |+++|.++|++  +|++||+|++|+.+..+++....++|++++|+||++++ +|+|+++++++..+.+..........  
T Consensus       157 ~~~~i~~~~~~--~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~-~g~g~~~~~~~~~~~~~~~~~g~~~~~~  233 (373)
T cd06453         157 PVKEIGEIAHE--AGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGP-TGIGVLYGKEELLEEMPPYGGGGEMIEE  233 (373)
T ss_pred             CHHHHHHHHHH--cCCEEEEEhhhhcCceeeeccccCCCEEEeccccccCC-CCcEEEEEchHHhhcCCCeecCCCcccc
Confidence            99999999999  99999999999998888888778999999999999965 88999999999888776543211100  


Q ss_pred             ------chHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCC
Q 015729          233 ------DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFS  305 (401)
Q Consensus       233 ------~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~  305 (401)
                            .+......     +..++++...++++.++++.+.+.|++...++..++++++++.|+++ ++++.....  ..
T Consensus       234 ~~~~~~~~~~~~~~-----~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~  306 (373)
T cd06453         234 VSFEETTYADLPHK-----FEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAE--DR  306 (373)
T ss_pred             ccccccccCCCccc-----cCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCcc--cc
Confidence                  01011111     22346888889999999999998889999999999999999999987 777764321  23


Q ss_pred             ceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC--------CCcEEEEeecccCCHHHHHHHHHHH
Q 015729          306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV--------AGKVFRIGHLGHLNELQLLGCLAGV  366 (401)
Q Consensus       306 ~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~--------~~~~~Ri~~~~~~~~~di~~~~~~i  366 (401)
                      ..++++.++ +.+..++.+.|.++ ||.+..+..+.        .++.+|+++..++|++|+|+++++|
T Consensus       307 ~~~~~~~~~-~~~~~~i~~~l~~~-gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l  373 (373)
T cd06453         307 AGVVSFNLE-GIHPHDVATILDQY-GIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL  373 (373)
T ss_pred             CCeEEEEEC-CcCHHHHHHHHHHC-CEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence            457778874 45778899998765 99998775421        2467999999999999999999864

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=100.00  E-value=2.3e-35  Score=276.62  Aligned_cols=337  Identities=18%  Similarity=0.180  Sum_probs=255.9

Q ss_pred             ccccCCCcCChHHHHHHHccCc------------CCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCC-hhHHHHHHH
Q 015729           11 HLFVPGPVHIPDQVIRAMNRNN------------EDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTT-GTGAWESAL   77 (401)
Q Consensus        11 ~~~~~~p~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g-~t~a~~~~~   77 (401)
                      ++|.|||++.|+.|++++.++.            ..|++..+.+.+.++|+.+++++|.+.++.++|++| +|+|++.++
T Consensus         1 ~~~~pGp~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~   80 (355)
T cd00611           1 INFSAGPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVP   80 (355)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHH
Confidence            5799999999999999998865            235556777899999999999999865566888877 999999999


Q ss_pred             hccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCC-C-hHHHHHHHhccCCCCceEEEEEecCCCcccccc
Q 015729           78 TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGA-K-LDVLASKLAADTAHTIKAICIVHNETATGVTNN  155 (401)
Q Consensus        78 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-d-~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~  155 (401)
                      .+++.++++...+..+.++..+..+++..|++++.++.+.++.. + ++..+..++    +++++|.++|.+|.||...+
T Consensus        81 ~~l~~~~~~~~~i~~g~~~~~~~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~lV~~~h~~t~tG~~~~  156 (355)
T cd00611          81 LNLLGDKGTADYVVTGAWSAKAAKEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLA----PDAAYVHYCSNETIHGVEFD  156 (355)
T ss_pred             HhcCCCCCeEEEEECCHHHHHHHHHHHhcCCCcEEEecccccCCCCCCCHhhcCCC----CCCCEEEEeCCcccccEEcc
Confidence            99887666665555677777777788999999999998654322 3 233323333    46799999999999999843


Q ss_pred             hHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchH
Q 015729          156 LSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK  235 (401)
Q Consensus       156 l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~  235 (401)
                           ++++.  +|+++++|+++++|..++|.++++  +.++|+||++ ||+|+|++++++++++++.+...  .+.++.
T Consensus       157 -----~i~~~--~g~~~~VDa~qs~g~~~idv~~~~--~~~ss~~K~l-GP~G~g~l~~~~~~~~~~~~~~~--~~~~~~  224 (355)
T cd00611         157 -----EVPDT--GGVPLVADMSSNILSRPIDVSKFG--VIYAGAQKNL-GPAGVTVVIVRKDLLGKARKITP--SMLNYK  224 (355)
T ss_pred             -----eeccc--CCCeEEEEccccccCCCCCHHHhC--EEEeeccccc-CCCceEEEEECHHHHhhcccCCC--CcccHH
Confidence                 45666  999999999999999999998766  4557799977 69999999999999988765422  122222


Q ss_pred             HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEc
Q 015729          236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV  313 (401)
Q Consensus       236 ~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~  313 (401)
                      ....   .+ .+.+||++..++++.++++++.++ |++++.++.+++++++++.|+++ |+.....++..+++.++.|.+
T Consensus       225 ~~~~---~~-~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~  300 (355)
T cd00611         225 THAD---NN-SLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRL  300 (355)
T ss_pred             HHHh---cC-CCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEc
Confidence            2112   22 236789999999999999999998 79999999999999999999998 853122222235556688887


Q ss_pred             CCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          314 PSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       314 ~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      ++.....++...+.+ .|+....+..  ..+.+|+|++.++|++|||+++++|+++.
T Consensus       301 ~~~~l~~~~~~~~~r-~G~~~~~~~~--~~g~vR~S~~~~nt~edi~~l~~al~~~~  354 (355)
T cd00611         301 GKEELEKEFLKEAEA-AGMIGLKGHR--SVGGIRASIYNALSLEGVQALADFMKEFQ  354 (355)
T ss_pred             CChhhhHHHHHHHHH-CCCcccCCCc--ccCeEEEEccCCCCHHHHHHHHHHHHHHh
Confidence            431111344344443 4886555543  23689999999999999999999998853

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=100.00  E-value=1.5e-35  Score=283.24  Aligned_cols=340  Identities=14%  Similarity=0.115  Sum_probs=262.9

Q ss_pred             CcccccCCCcCChHHHHHHHccCcC-----CCC-Cc----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNE-----DYR-SP----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~-----~~~-~~----~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      ..||+.++++++++.|++++..+..     .+. ..    ...+.++++++.+++++|.++. .+++++|+|++++.++.
T Consensus         4 ~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~~~g~t~a~~~~l~   82 (402)
T TIGR02006         4 PIYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSR-EIVFTSGATESNNLAIK   82 (402)
T ss_pred             cEEeeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCCHHHHHHHHHH
Confidence            5899999999999999999876431     111 11    1235688899999999998764 49999999999998875


Q ss_pred             cc----CCCCCeEEEEcCCcchHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc
Q 015729           79 NT----LSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        79 ~~----~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~  153 (401)
                      ++    .++||+|+++.++|++.. ....++..|++++.++.+.++.+|++++++.+++    +++++++++++|+||.+
T Consensus        83 ~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~----~~~lv~v~~~~n~tG~~  158 (402)
T TIGR02006        83 GIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIRD----DTILVSIMHVNNEIGVI  158 (402)
T ss_pred             HHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC----CCEEEEEECCCcCceec
Confidence            54    368999999999888765 2234456799999999988888999999999874    56899999999999999


Q ss_pred             cchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccc
Q 015729          154 NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD  233 (401)
Q Consensus       154 ~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~  233 (401)
                      .|+++|.++|++  +|+++++|++|+.|..+++..+.++|++++|+||++ ||.|+|+++++++...++.+......   
T Consensus       159 ~~~~~I~~l~~~--~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~~~~~g~~---  232 (402)
T TIGR02006       159 QDIAAIGEICRE--RKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIY-GPKGIGALYVRRKPRVRLEALIHGGG---  232 (402)
T ss_pred             ccHHHHHHHHHH--cCCEEEEEcchhcCCcccCccccCCCEEEEehhhhc-CCCceEEEEEccCCCCCCCceecCCC---
Confidence            999999999999  999999999999999998888889999999999965 68899999999876544433211100   


Q ss_pred             hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEE
Q 015729          234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVI  312 (401)
Q Consensus       234 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~  312 (401)
                         +.+.++     .+|++...++++.++++.+.. +++...++..++.+++++.|.++ ++.+..... .+.+..+.+.
T Consensus       233 ---~~~~~~-----~gt~~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~-~~~p~~~~v~  302 (402)
T TIGR02006       233 ---HERGMR-----SGTLPTHQIVGMGEAFRIAKE-EMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLE-HRVPGNLNVS  302 (402)
T ss_pred             ---ccCCcc-----CCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCcc-ccCCCeEEEE
Confidence               011233     346999999999999998775 57888899999999999999886 666654322 1333333344


Q ss_pred             cCCCCCHHHHHHHHHhhCCeEEccCCCCCC-------------------CcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          313 VPSHINSSEIVRRAWQRYNLSLGLGLNKVA-------------------GKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       313 ~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~-------------------~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ++ ..+..++...|  + +|.++.|..+..                   .+.+|+|+..++|++|+|++++.|+++++.+
T Consensus       303 f~-~~~~~~~~~~l--~-~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~  378 (402)
T TIGR02006       303 FN-YVEGESLIMAL--K-DLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKL  378 (402)
T ss_pred             Ee-CcCHHHHHHhc--C-CEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            43 34556666555  2 777766644321                   3679999999999999999999999988764

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=100.00  E-value=5.4e-35  Score=277.95  Aligned_cols=341  Identities=12%  Similarity=0.078  Sum_probs=261.2

Q ss_pred             cccccCCCcCChHHHHHHHccCcCC-----CCCc-c---HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNED-----YRSP-A---VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT   80 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~-~---~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~   80 (401)
                      .|++.++.+++++.|++++.++...     +... .   .....++.++.+.+.+|..+++++++++|+|+++..++.++
T Consensus         1 ~yld~aa~~~~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~   80 (382)
T TIGR03403         1 VYLDNNATTMLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGV   80 (382)
T ss_pred             CcccCcCCCCCCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHH
Confidence            4899999999999999999874432     1111 1   12234455555566666644456999999999999888764


Q ss_pred             C-----CC-CCeEEEEcCCcchHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc
Q 015729           81 L-----SP-GDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        81 ~-----~~-gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~  153 (401)
                      .     ++ +++|+++..+|+++. ....++..|++++.++.+.++.+|++++++++++    +++++++++++||||.+
T Consensus        81 ~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~~----~t~lv~~~~~~n~tG~~  156 (382)
T TIGR03403        81 YFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAITE----KTALVSVMWANNETGMI  156 (382)
T ss_pred             HHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhccc----CCeEEEEEcccCCCccc
Confidence            2     45 468999988888776 3345567899999999988888899999999874    56899999999999999


Q ss_pred             cchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccc
Q 015729          154 NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD  233 (401)
Q Consensus       154 ~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~  233 (401)
                      .|+++|.++|++  +|+++++|++++.|..+++..++++|++++|+||++ ||+|+|+++++++.  .+.+.......  
T Consensus       157 ~~~~~I~~la~~--~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~-gp~G~g~l~vr~~~--~~~p~~~g~~~--  229 (382)
T TIGR03403       157 FPIKEIGEICKE--RGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFH-GPKGVGGLYIRKGV--ELTPLFHGGEH--  229 (382)
T ss_pred             cCHHHHHHHHHH--cCCEEEEechhhcCCCccCccccCCCEEEEcchhhC-CCCceEEEEECCCC--CCCCcccCCCC--
Confidence            999999999999  999999999999998888888889999999999975 79999999998764  12221100000  


Q ss_pred             hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEE
Q 015729          234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVI  312 (401)
Q Consensus       234 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~  312 (401)
                          ...+     ..+|++...++++.++++...+ .++...++.+++++++.+.|.++ |+++..+.. .+.+.++.+.
T Consensus       230 ----~~~~-----~~gt~~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~  298 (382)
T TIGR03403       230 ----MGGR-----RSGTLNVPYIVAMGEAMRLANE-YLDFEKSHVRRLRDRLEDALLELPDVFVVGDRE-HRVPNTILIS  298 (382)
T ss_pred             ----CCCc-----ccCCcChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCC-CCcCCEEEEE
Confidence                0111     2456899889999999987665 47788899999999999999886 777765432 2344566677


Q ss_pred             cCCCCCHHHHHHHHHhhCCeEEccCCCCC-------------------CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          313 VPSHINSSEIVRRAWQRYNLSLGLGLNKV-------------------AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       313 ~~~~~~~~~l~~~L~~~~~i~v~~g~~~~-------------------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      + ++++..++.+.|.++ ||.++.|..+.                   .++.+|+|++.++|++|+|+++++|+++++++
T Consensus       299 ~-~~~~~~~~~~~L~~~-gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~  376 (382)
T TIGR03403       299 I-KGVEGEAMLWDLNKA-GIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRL  376 (382)
T ss_pred             e-CCCCHHHHHHhhccC-CEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            7 566788888888655 99999764321                   13569999999999999999999999998765


Q ss_pred             C
Q 015729          374 G  374 (401)
Q Consensus       374 ~  374 (401)
                      +
T Consensus       377 ~  377 (382)
T TIGR03403       377 R  377 (382)
T ss_pred             H
Confidence            3

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=100.00  E-value=1.9e-34  Score=268.29  Aligned_cols=328  Identities=16%  Similarity=0.172  Sum_probs=255.8

Q ss_pred             CChHHHHHHHccCcC------------CCCCccHHHHHHHHHHHHHHHhcCCCCceEEec-CChhHHHHHHHhccCCCCC
Q 015729           19 HIPDQVIRAMNRNNE------------DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP-TTGTGAWESALTNTLSPGD   85 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~-~g~t~a~~~~~~~~~~~gd   85 (401)
                      ..|.+|++++.++..            .|+++.+.+.++++++.++++++.+..+.++++ +|||.|+++++.+++.+||
T Consensus         2 ~~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~   81 (349)
T TIGR01364         2 ALPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEGK   81 (349)
T ss_pred             CCCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCC
Confidence            356677777766332            245667789999999999999998544457666 4599999999999999999


Q ss_pred             eEEEEcCCcchHHHHHHHHHcCCcEEEEeCC----CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHH
Q 015729           86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESD----WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRK  161 (401)
Q Consensus        86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~----~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~  161 (401)
                      +++++..|.|+..|...+++.|+ +..+..+    +...+|+++++.  +    +++++|.++|.+|.||+..+     +
T Consensus        82 ~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~v~~th~ETstGv~~~-----~  149 (349)
T TIGR01364        82 VADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWEI--S----EDAAYVHYCANETIHGVEFR-----E  149 (349)
T ss_pred             eEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcCC--C----CCCCEEEEcCCCCcccEecc-----e
Confidence            99999999999999999999999 7777754    223456665442  2    36799999999999999886     6


Q ss_pred             HhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHh
Q 015729          162 LLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFY  241 (401)
Q Consensus       162 l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (401)
                      +++.  +++++++|+++++|..+++.+++  |++++|+||++ ||+|+|++++++++++++.+...  .+.++...   .
T Consensus       150 l~~~--~~~l~iVDavss~g~~~id~~~~--d~~~~ssqK~l-gP~Glg~l~~s~~~~~~~~~~~~--~~~~~~~~---~  219 (349)
T TIGR01364       150 LPDV--KNAPLVADMSSNILSRPIDVSKF--GLIYAGAQKNI-GPAGLTVVIVRKDLLGRASRITP--SMLNYKIH---A  219 (349)
T ss_pred             eccc--CCCeEEEEccccccCccCCHHHc--cEEEEeccccc-CCCceEEEEECHHHHhhcccCCC--CcchHHHH---H
Confidence            7777  89999999999999999999864  59999999988 59999999999999988766322  22332111   1


Q ss_pred             hcCCCCCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCH
Q 015729          242 NLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINS  319 (401)
Q Consensus       242 ~~g~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (401)
                      ..+ ++++||++..++++.++++++.++ |++++.++.+++++++++.|+++ |+.....++..+++.++.|.+|+....
T Consensus       220 ~~~-~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~~~  298 (349)
T TIGR01364       220 END-SMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEELE  298 (349)
T ss_pred             hcC-CCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChhHh
Confidence            112 346789999999999999999998 79999999999999999999999 665443322335667788888642112


Q ss_pred             HHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          320 SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       320 ~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .++...+.++ |+.+.++..  ..+.+|+|++.++|++|||+++++|+++++.
T Consensus       299 ~~~~~~~~~~-Gi~~~~~~~--~~g~vRvS~~~~nt~edid~l~~al~~~~~~  348 (349)
T TIGR01364       299 KRFLKEAEER-GLVSLKGHR--SVGGMRASIYNAMPLEGVQALVDFMKEFQKK  348 (349)
T ss_pred             HHHHHHHHHC-CCcccCCcc--ccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence            4555556544 886666644  2358999999999999999999999987753

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PLN02452 phosphoserine transaminase

Probab=100.00  E-value=2.4e-34  Score=267.27  Aligned_cols=338  Identities=15%  Similarity=0.178  Sum_probs=270.9

Q ss_pred             CcccccCCCcCChHHHHHHHccCc------------CCCCCccHHHHHHHHHHHHHHHhcCCCCceE-EecCChhHHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNN------------EDYRSPAVPALTKTLLEDIKKIFKTTSGTPF-LIPTTGTGAWES   75 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i-~~~~g~t~a~~~   75 (401)
                      +.|||+|||..+|+.|++++.+..            ..|+++.+.+.+.++++.++++++.+..+++ ++.+|||.++++
T Consensus         7 ~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea   86 (365)
T PLN02452          7 RVFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAA   86 (365)
T ss_pred             ceEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHH
Confidence            579999999999999999998752            5688999999999999999999998654445 557999999999


Q ss_pred             HHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCC---CCChHHHHHHHhccCCCCceEEEEEecCCCccc
Q 015729           76 ALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE---GAKLDVLASKLAADTAHTIKAICIVHNETATGV  152 (401)
Q Consensus        76 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~---~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~  152 (401)
                      ++.+++.+|+++++...|.|+..+.+.++..|...+........   .++++++    +.+  ..++.+.++|.++.||+
T Consensus        87 ~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~v~~~hnETstGv  160 (365)
T PLN02452         87 IPLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEW----ELT--PDAKFVHICANETIHGV  160 (365)
T ss_pred             HHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHc----CCC--CCCcEEEECCCCCCCcE
Confidence            99999999999999999999999989999999755544322222   4566654    222  35789999999999999


Q ss_pred             c-cchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccc
Q 015729          153 T-NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF  231 (401)
Q Consensus       153 ~-~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~  231 (401)
                      . .|++++.        ++++++|+++++++.++|++++++|+  +|+||.+ ||+|+|+++++++++++.....  ..+
T Consensus       161 ~~~~~~~i~--------~~~lvVDa~Ss~g~~pidv~~~~v~~--~saqK~l-GP~Gl~~v~vr~~~l~~~~~~~--~~~  227 (365)
T PLN02452        161 EFKDYPDVG--------NVPLVADMSSNFLSKPVDVSKYGVIY--AGAQKNV-GPSGVTIVIIRKDLIGNARPIT--PGM  227 (365)
T ss_pred             ecCcccccC--------CCeEEEECCccccCcccCHHHcCEEE--Eeccccc-CCCCeEEEEEcHHHHhhcccCC--Cch
Confidence            6 6766553        27899999999999999999888765  6999988 6999999999999998865432  224


Q ss_pred             cchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeE
Q 015729          232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVT  309 (401)
Q Consensus       232 ~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~  309 (401)
                      +++....+   .+ ++.+||++..++++.++++++.++ |++.+.++.+++++++++.|++. |+.....++..++...+
T Consensus       228 ~~~~~~~~---~~-s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~v  303 (365)
T PLN02452        228 LDYKIHAE---ND-SLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNV  303 (365)
T ss_pred             hhHHHHHh---cC-CccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEE
Confidence            44433222   22 557899999999999999999987 79999999999999999999985 77222222233677788


Q ss_pred             EEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          310 AVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       310 ~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .|.+++....+++.+.+.++ |+...+|.... ++ +|+|+++.++.++++.+++.+++.-++
T Consensus       304 sF~~~~~~~~~~f~~~~~~~-g~~~~~G~r~~-gg-~R~s~yna~~~~~v~~L~~~m~~f~~~  363 (365)
T PLN02452        304 PFTLGGSELEAEFVKEAAKA-GMVQLKGHRSV-GG-MRASIYNAMPLAGVEKLVAFMKDFQAK  363 (365)
T ss_pred             EEEcCCchhHHHHHHHHHHC-CCcccCCcccc-Cc-eEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence            88886544566888888766 99988886653 33 999999999999999999999987654

>TIGR01814 kynureninase kynureninase

Probab=100.00  E-value=3.5e-34  Score=274.07  Aligned_cols=345  Identities=16%  Similarity=0.127  Sum_probs=256.7

Q ss_pred             CCCcccccCCCcCChHHHHHHHccCcCC--------CCC--ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHH
Q 015729            7 PGKNHLFVPGPVHIPDQVIRAMNRNNED--------YRS--PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA   76 (401)
Q Consensus         7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~~--------~~~--~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~   76 (401)
                      ++..||.+++-+++++.|.+++.++...        +..  ..+.....++++ + +++|.+++ .+++++|+|++++.+
T Consensus        26 ~~~iyld~~a~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g~~~~-~v~~~~~~t~~l~~~  102 (406)
T TIGR01814        26 NAVIYLDGNSLGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVGAKED-EVVVMNTLTINLHLL  102 (406)
T ss_pred             CCcEEecCCCcCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccCCCCC-cEEEeCCchHHHHHH
Confidence            5569999776667788898888763211        111  122333444444 5 89998754 499999999999998


Q ss_pred             HhccCCCCC---eEEEEcCCcchHH--HHHHHHHcCCcE----EEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecC
Q 015729           77 LTNTLSPGD---RIISFLIGQFSLL--WIDQQQRLNFNV----DVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNE  147 (401)
Q Consensus        77 ~~~~~~~gd---~vl~~~~~~~~~~--~~~~~~~~g~~~----~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~  147 (401)
                      +.+++++++   .|++...+|++..  +...++..|+++    +.++.+.++.+|++++++.++..+ ++++++++++++
T Consensus       103 ~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-~~t~lv~~~~v~  181 (406)
T TIGR01814       103 LASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEKNG-DDIAVILLSGVQ  181 (406)
T ss_pred             HHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHhcC-CCeEEEEEeccc
Confidence            888776643   5777667887754  444567778887    456666566789999999886433 578999999999


Q ss_pred             CCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCC
Q 015729          148 TATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS  227 (401)
Q Consensus       148 n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~  227 (401)
                      |.+|.+.|+++|.++|++  +|+++++|++|++|..+++..++++|++++|+|||+++++| |.++++++....+.+...
T Consensus       182 ~~tG~~~~~~~i~~~~~~--~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~pG-~~l~v~~~~~~~~~p~~~  258 (406)
T TIGR01814       182 YYTGQLFDMAAITRAAHA--KGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAGPG-AGAFVHEKHAHTERPRLA  258 (406)
T ss_pred             cccceecCHHHHHHHHHH--cCCEEEEEcccccCCcccccccCCCCEEEEcCccccCCCCC-eEEEEehhhhhhcCCCCC
Confidence            999999999999999999  99999999999999999999899999999999999987888 777776665544443222


Q ss_pred             Cccc------cc----hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-C---
Q 015729          228 VRVF------FD----WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-G---  293 (401)
Q Consensus       228 ~~~~------~~----~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g---  293 (401)
                      ....      ++    +.....+++     .+|+++..++++.++++.+.+.|++++.++..++.+++++.|.++ |   
T Consensus       259 g~~~~~~~~~~~~~~~~~~~~~~~~-----~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~  333 (406)
T TIGR01814       259 GWWGHARPTRFKMDNTLGLIPCGFR-----ISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPP  333 (406)
T ss_pred             cccCCCCccccccccccCCCcccee-----eCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            1100      00    000012222     346999999999999999998899999999999999999999875 3   


Q ss_pred             -CccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEee-cccCCHHHHHHHHHHHHHHH
Q 015729          294 -LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGH-LGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       294 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~-~~~~~~~di~~~~~~i~~~l  370 (401)
                       +++..+.+......++.|.+|  .+..++.+.|.++ ||.+...    .++.+|||+ +.++|++|+|+++++|++++
T Consensus       334 ~~~i~~~~~~~~r~~~v~~~~~--~~~~~~~~~L~~~-gi~v~~~----~~~~iRiS~~~~~nt~~did~l~~~l~~~~  405 (406)
T TIGR01814       334 VLTIITPRDHAQRGCQLSLTHP--VPGKAVFQALIKR-GVIGDKR----EPSVIRVAPVPLYNTFVDVYDAVNVLEEIL  405 (406)
T ss_pred             ceEEeCCCChhhcCCeEEEEec--CCHHHHHHHHHHC-CEEEecc----CCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence             666654322222346778875  4678899999766 9987522    246899998 57899999999999998865

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=100.00  E-value=8.8e-33  Score=253.60  Aligned_cols=339  Identities=16%  Similarity=0.140  Sum_probs=271.9

Q ss_pred             CCcccccCCCcCChHHHHHHHcc-----Cc-------CCCCCccHHHHHHHHHHHHHHHhcCCCCceE-EecCChhHHHH
Q 015729            8 GKNHLFVPGPVHIPDQVIRAMNR-----NN-------EDYRSPAVPALTKTLLEDIKKIFKTTSGTPF-LIPTTGTGAWE   74 (401)
Q Consensus         8 ~~~~~~~~~p~~~~~~v~~a~~~-----~~-------~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i-~~~~g~t~a~~   74 (401)
                      .+.|+|+|||..+|++|++++++     ..       .+|+++.+.+++.++++.++++++.+..+.+ ++.+|||.+++
T Consensus         3 ~~~~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~e   82 (364)
T PRK12462          3 RNQLNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFS   82 (364)
T ss_pred             cccceecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHH
Confidence            35799999999999999999984     22       4588999999999999999999999654445 44677999999


Q ss_pred             HHHhccCCCCCeEE-EEcCCcchHHHHHHHHHcCCcEEEEeCCC----CCCCChHHHHHHHhccCCCCceEEEEEecCCC
Q 015729           75 SALTNTLSPGDRII-SFLIGQFSLLWIDQQQRLNFNVDVVESDW----GEGAKLDVLASKLAADTAHTIKAICIVHNETA  149 (401)
Q Consensus        75 ~~~~~~~~~gd~vl-~~~~~~~~~~~~~~~~~~g~~~~~v~~~~----~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~  149 (401)
                      ++..+++.+||+++ ....|+|+..|...++..| ++..+....    +..+++++++  ++    +..+.+.+++.++.
T Consensus        83 a~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~~--~~----~d~~~v~~t~NETs  155 (364)
T PRK12462         83 MIPMNFSRPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAELD--WD----ARAPFRHYVSNETV  155 (364)
T ss_pred             HHHHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHhc--cC----CCCcEEEEccCCCC
Confidence            99999999999777 7889999999888888887 565554322    2344555541  22    23578999999999


Q ss_pred             cccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCc
Q 015729          150 TGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR  229 (401)
Q Consensus       150 tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~  229 (401)
                      +|+..+     ++.+.  +++++|+|.++++++.+++++++  |+++.+.+|.++ |+|+++++++++++++.....  .
T Consensus       156 tGv~~~-----~~~~~--~~~llvvD~sS~~~s~pid~~~~--dvi~agsQKnlg-P~Gltvvivs~~al~~~~~~~--p  223 (364)
T PRK12462        156 EGLQFP-----DAAGL--PDSPLIADMSSDFMSRPFDVEAY--GMVYAHAQKNLG-PAGVTVAIIRRALLERVPDTL--P  223 (364)
T ss_pred             ceEecC-----ccccc--CCCeEEEEcCchhhCCCCChHHc--cEEEeeccccCC-CCceEEEEECHHHHhhccccC--C
Confidence            999997     44445  68999999999999999999976  999999999995 999999999999998876432  2


Q ss_pred             cccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCc
Q 015729          230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE--GLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSD  306 (401)
Q Consensus       230 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~--g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~  306 (401)
                      .++++.....   .+ ...+||++..++++..+++++.++  |++...++.++.++.+++.+++. |+.....++..+|.
T Consensus       224 ~~ldy~~~~~---~~-s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~  299 (364)
T PRK12462        224 PMLDFRTHVE---HR-SNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARST  299 (364)
T ss_pred             chhhHHHHHh---cC-CCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCc
Confidence            3555544444   23 346799999999999999999887  89999999999999999999998 56666666677888


Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          307 TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       307 ~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      +.+.|.+++..-..++.+.+.++ |+.-..|+-.  -+.+|+|.+...+.++++.+++-+++.-++
T Consensus       300 mnv~f~~~~~~l~~~f~~~a~~~-gl~~lkGhr~--vgg~Ras~yna~~~e~v~~L~~fm~~f~~~  362 (364)
T PRK12462        300 MNVAFRFRQPRLDTLFKEQSTEA-GFCGLSGHRS--IGGIRASLYNAVSEQAVSRLCAFLKDFAIR  362 (364)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHHC-CCccccCCcc--cCceEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence            88888886543455677777655 8876666543  234999999999999999999999887654

>PLN02724 Molybdenum cofactor sulfurase

Probab=100.00  E-value=2.7e-33  Score=286.52  Aligned_cols=362  Identities=12%  Similarity=0.048  Sum_probs=269.3

Q ss_pred             CCCCCCCcccccCCCcCChH-HHHHHHccCc-----CCCC----CccHHHHHHHHHHHHHHHhcCCCCc-eEEecCChhH
Q 015729            3 YMYAPGKNHLFVPGPVHIPD-QVIRAMNRNN-----EDYR----SPAVPALTKTLLEDIKKIFKTTSGT-PFLIPTTGTG   71 (401)
Q Consensus         3 ~~~~~~~~~~~~~~p~~~~~-~v~~a~~~~~-----~~~~----~~~~~~~~~~l~~~la~~~g~~~~~-~i~~~~g~t~   71 (401)
                      |+...+..||+.++.+++++ .|.+++..+.     +.+.    +....+.+.++|+.+++++|.++++ .++||+|+|+
T Consensus        29 fp~l~~~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~  108 (805)
T PLN02724         29 FARLKGVVYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATA  108 (805)
T ss_pred             hhhcCCCEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHH
Confidence            33344578999999888665 4445444321     1221    1224567899999999999997654 5899999999


Q ss_pred             HHHHHHhcc-CCCCCeEEEEcCCcchHH-HHHHHHHcCCcEEEEeCC--------CCCCCCh--HHHHHHHh------cc
Q 015729           72 AWESALTNT-LSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESD--------WGEGAKL--DVLASKLA------AD  133 (401)
Q Consensus        72 a~~~~~~~~-~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~--------~~~~~d~--~~le~~~~------~~  133 (401)
                      |++.+..++ +++||+|+++..+|.+.. |..+++..|++++.++.+        ..+.+++  +++++.++      ..
T Consensus       109 alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~  188 (805)
T PLN02724        109 ALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKRED  188 (805)
T ss_pred             HHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccc
Confidence            999988776 789999999888887766 556677889999999876        2233333  55666532      11


Q ss_pred             CCCCceEEEEEecCCCcccccchHHHHHHhhh-cCC-----CcEEEEecccccCcceeccCcccceEEEecCCCcccCCC
Q 015729          134 TAHTIKAICIVHNETATGVTNNLSKVRKLLDE-YRH-----PALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPT  207 (401)
Q Consensus       134 ~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~-~~~-----~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~  207 (401)
                      ...+++++.+++.+|.+|.+.|++.|..+++. +.+     ++++++|++|+.|..++|+.++++|++++|+||++++|.
T Consensus       189 ~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~  268 (805)
T PLN02724        189 DGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPT  268 (805)
T ss_pred             cCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCC
Confidence            11356899999999999999999977655553 112     368999999999999999999999999999999997799


Q ss_pred             cceEEEecHHHHHHhccCCCCcc----------c-cchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHH
Q 015729          208 GMGIVCASPKALEASKTAKSVRV----------F-FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE  276 (401)
Q Consensus       208 g~G~l~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~  276 (401)
                      |+|+++++++..+.+.+....+.          + ........+++.|+     ++...++++.++++++.+.|++++.+
T Consensus       269 G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT-----~n~~~i~~l~aal~~l~~ig~~~I~~  343 (805)
T PLN02724        269 GLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGT-----ISFLSIAALRHGFKLLNRLTISAIAM  343 (805)
T ss_pred             CceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCC-----cchhHHHHHHHHHHHHHHhChHHHHH
Confidence            99999999998877765432210          0 01112356788775     99999999999999999989999999


Q ss_pred             HHHHHHHHHHHHHHHc-------CCccccCCC----ccCCceeEEEEcCCCCC-----HHHHHHHHHhhCCeEEccCCCC
Q 015729          277 RHRRLGKATRLAVEAW-------GLKNCTQKE----EWFSDTVTAVIVPSHIN-----SSEIVRRAWQRYNLSLGLGLNK  340 (401)
Q Consensus       277 ~~~~~~~~l~~~L~~~-------g~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~l~~~L~~~~~i~v~~g~~~  340 (401)
                      +..++.+++.+.|.++       ++.++.+..    ......++.|.+ .+.+     ..++. .|.+.+||.++.|..+
T Consensus       344 ~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv-~~~~~~~v~~~~v~-~l~~~~gI~vR~G~~C  421 (805)
T PLN02724        344 HTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNL-KRADGSWVGHREVE-KLASLSGIQLRTGCFC  421 (805)
T ss_pred             HHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEE-EcCCCCEeCHHHHH-HHHHhcCcEEeecccc
Confidence            9999999999999986       256665321    112345777887 3333     33444 4555679999988653


Q ss_pred             C-----------------------------------CCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          341 V-----------------------------------AGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       341 ~-----------------------------------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      -                                   ..+.+|+|+..++|++|||++++.|++..-
T Consensus       422 a~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~  487 (805)
T PLN02724        422 NPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFV  487 (805)
T ss_pred             CchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhh
Confidence            2                                   126699999999999999999999999763

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=100.00  E-value=9.1e-33  Score=262.40  Aligned_cols=343  Identities=14%  Similarity=0.108  Sum_probs=255.1

Q ss_pred             CcccccC--CCcCChHHHHHHHccCcCCCCC---------ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 015729            9 KNHLFVP--GPVHIPDQVIRAMNRNNEDYRS---------PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL   77 (401)
Q Consensus         9 ~~~~~~~--~p~~~~~~v~~a~~~~~~~~~~---------~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~   77 (401)
                      ...++-|  --+++++++++++.++......         ........++++.+++++|.+.   +++++|+++|+..++
T Consensus        19 ~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~---~~~~~g~t~a~~~al   95 (387)
T PRK09331         19 EFINLDPIQRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDE---ARVTHGAREGKFAVM   95 (387)
T ss_pred             cccccChhhcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCCCc---EEEeCCHHHHHHHHH
Confidence            3444444  2477888899988886532211         1123468899999999999865   778999999999999


Q ss_pred             hccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC--CCCCCCChHHHHHHHhcc---CCCCceEEEEEecCCCccc
Q 015729           78 TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES--DWGEGAKLDVLASKLAAD---TAHTIKAICIVHNETATGV  152 (401)
Q Consensus        78 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~le~~~~~~---~~~~~~~i~~~~~~n~tG~  152 (401)
                      .+++++||+|++..++|++...  .++..|++++.++.  +.++.+|++++++.+++.   ..++++++++++++|++|.
T Consensus        96 ~~l~~~gd~Vlv~~~~h~s~~~--~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~  173 (387)
T PRK09331         96 HSLCKKGDYVVLDGLAHYTSYV--AAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGN  173 (387)
T ss_pred             HHhcCCCCEEEECCCchHHHHH--HHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcc
Confidence            9999999999999999888763  36778999999998  567778999999998752   1136799999999999999


Q ss_pred             ccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCcccc
Q 015729          153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF  232 (401)
Q Consensus       153 ~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~  232 (401)
                      +.|+++|.++|++  +|+++|+|++|+.|..+++...+++|++++|+||+++++.|+|+++++++.++.+...... +..
T Consensus       174 ~~~l~~I~~la~~--~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~~-~~~  250 (387)
T PRK09331        174 LADAKKVAKVAHE--YGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGVLATTEEYADKVFRTSRK-FGV  250 (387)
T ss_pred             cccHHHHHHHHHH--cCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhcccccCC-Ccc
Confidence            9999999999999  9999999999999988888888899999999999998888899999999988776443210 000


Q ss_pred             chHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEE
Q 015729          233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAV  311 (401)
Q Consensus       233 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~  311 (401)
                            ...   .++..+.+...++++.++++.+.+.  .+..++..++++++++.|.++ |++++...+  .+..++.+
T Consensus       251 ------~~~---~~~~~~~~~~~~~~~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~l~g~~~~~~~~--~~~~i~~~  317 (387)
T PRK09331        251 ------KEV---ELLGCTLRGAPLVTLMASFPHVVER--VKRWDEEVKKARWFVDELEKIEGFKQLGEKP--RNHDLMKF  317 (387)
T ss_pred             ------cce---eeeceecCchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCEEEeccCc--CcCCeEEE
Confidence                  000   0011123333345556666655443  235566678888999999998 998875321  23346666


Q ss_pred             EcCC--------CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCCCC
Q 015729          312 IVPS--------HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPV  377 (401)
Q Consensus       312 ~~~~--------~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~~~  377 (401)
                      ..|.        ..+..++.+.|.++ ||...+   ...++.+|++..+ ++++|+++++++|++++++++.++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~L~~~-gI~~~~---~~~~~i~ri~~~g-~t~~di~~l~~aL~~i~~~~~~~~  386 (387)
T PRK09331        318 ETPSFDEIAKKHKRRGFFLYEELKKR-GIHGIK---PGATKEFKLSTYG-LTWEQVEYVADAFKEIAEKYGLEV  386 (387)
T ss_pred             eCCchhHHhhhccccchhHHHHHHHc-CceEEc---cCCceEEEEEecc-CCHHHHHHHHHHHHHHHHhcCCCC
Confidence            6541        11235688889765 997322   2235668887766 799999999999999999887654

>PRK14012 cysteine desulfurase; Provisional

Probab=100.00  E-value=5.6e-33  Score=265.74  Aligned_cols=339  Identities=14%  Similarity=0.116  Sum_probs=253.9

Q ss_pred             CcccccCCCcCChHHHHHHHccCcC---C----CC-Cc----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNE---D----YR-SP----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA   76 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~---~----~~-~~----~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~   76 (401)
                      +.|++.++++++++.+++++.++..   .    +. ..    .....+.++++.+++++|.++. .+++++|+|+|++.+
T Consensus         4 ~iyld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~-~v~~~~g~t~al~~~   82 (404)
T PRK14012          4 PIYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPR-EIVFTSGATESDNLA   82 (404)
T ss_pred             eEEecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcC-eEEEeCCHHHHHHHH
Confidence            6899999999999999999977542   1    11 11    1135678899999999998764 499999999999988


Q ss_pred             Hhcc----CCCCCeEEEEcCCcchHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcc
Q 015729           77 LTNT----LSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATG  151 (401)
Q Consensus        77 ~~~~----~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG  151 (401)
                      +.++    +++||+|+++..+|++.. .....+..|++++.++.+.++.+|++++++++++    +++++++++++|+||
T Consensus        83 l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~----~t~lv~~~~~~n~tG  158 (404)
T PRK14012         83 IKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRD----DTILVSIMHVNNEIG  158 (404)
T ss_pred             HHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCC----CCEEEEEECcCCCcc
Confidence            7654    478999999999887765 1233345699999999988888999999999974    568999999999999


Q ss_pred             cccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccc
Q 015729          152 VTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF  231 (401)
Q Consensus       152 ~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~  231 (401)
                      .+.|+++|.++|++  +|+++|+|++|+.|..+++....++|++++|+||.+ |+.|+|+++++++...++.+...... 
T Consensus       159 ~~~~~~~I~~la~~--~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~-gp~g~G~l~~~~~~~~~~~~~~~g~~-  234 (404)
T PRK14012        159 VIQDIAAIGEICRE--RGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIY-GPKGIGALYVRRKPRVRLEAQMHGGG-  234 (404)
T ss_pred             chhhHHHHHHHHHH--cCCEEEEEcchhcCCcccCcccCCCCEEEEehhhcc-CCCceEEEEEecCCCCCCCceecCCC-
Confidence            99999999999999  999999999999998888888888999999999965 67789999998875333322111000 


Q ss_pred             cchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCce--e
Q 015729          232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDT--V  308 (401)
Q Consensus       232 ~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~--~  308 (401)
                           ....++     .++++...++++.++++..+. +.+...++.+++.+++.+.|+++ ++.+...... ..+.  .
T Consensus       235 -----~~~~~~-----~gt~~~~~~~~l~~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~-~~~~~~~  302 (404)
T PRK14012        235 -----HERGMR-----SGTLPTHQIVGMGEAARIAKE-EMATENERIRALRDRLWNGIKDIEEVYLNGDLEQ-RVPGNLN  302 (404)
T ss_pred             -----ccCCcc-----CCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccc-cCCCEEE
Confidence                 001122     235777788888889887655 45678888999999999999886 5655432111 2222  3


Q ss_pred             EEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC-------------------CCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK-------------------VAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       309 ~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~-------------------~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      +++..+   +..++...|.   ++.+..+..+                   ...+.+|++++.++|++|+|+++++|+++
T Consensus       303 ~~~~~~---~~~~~~~~l~---~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~  376 (404)
T PRK14012        303 VSFNYV---EGESLIMALK---DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKS  376 (404)
T ss_pred             EEEeCc---CHHHHHHhCC---CeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            444442   3456666663   5555544221                   11357999999999999999999999999


Q ss_pred             HHhcC
Q 015729          370 LKDVG  374 (401)
Q Consensus       370 l~~~~  374 (401)
                      ++.+.
T Consensus       377 ~~~~~  381 (404)
T PRK14012        377 IGKLR  381 (404)
T ss_pred             HHHHH
Confidence            87653

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=8e-33  Score=260.42  Aligned_cols=333  Identities=19%  Similarity=0.169  Sum_probs=244.9

Q ss_pred             CcccccCC-C-cCChHHHHHHHccCcCCCC-CccHHHHHHHHHHHHHHHhcCC------CCceEEecCChhHHHHHHHhc
Q 015729            9 KNHLFVPG-P-VHIPDQVIRAMNRNNEDYR-SPAVPALTKTLLEDIKKIFKTT------SGTPFLIPTTGTGAWESALTN   79 (401)
Q Consensus         9 ~~~~~~~~-p-~~~~~~v~~a~~~~~~~~~-~~~~~~~~~~l~~~la~~~g~~------~~~~i~~~~g~t~a~~~~~~~   79 (401)
                      ..+.++-| | .+.|+.+++++.+...... .+.......+||+.+++++...      +++++++|+|+++|+..++.+
T Consensus        29 ~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a  108 (393)
T COG0436          29 DVIDLSIGEPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLA  108 (393)
T ss_pred             CEEEeCCCCCCCCCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHH
Confidence            45666665 3 3666667777766332211 2224556667777777665432      335599999999999999999


Q ss_pred             cCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCC---CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc-
Q 015729           80 TLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD---WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-  155 (401)
Q Consensus        80 ~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~-  155 (401)
                      ++.|||+|++++|+|+++.  ......|++++.++++   .++.+|++++++++++    ++|++++++|+||||.+++ 
T Consensus       109 ~~~pGDeVlip~P~Y~~y~--~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~----ktk~i~ln~P~NPTGav~~~  182 (393)
T COG0436         109 LLNPGDEVLIPDPGYPSYE--AAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP----KTKAIILNSPNNPTGAVYSK  182 (393)
T ss_pred             hcCCCCEEEEeCCCCcCHH--HHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc----cceEEEEeCCCCCcCcCCCH
Confidence            9999999999999888765  5678899999999975   3678999999999984    6799999999999999996 


Q ss_pred             --hHHHHHHhhhcCCCcEEEEecccccCcce----e---ccCc-ccceEEEecCCCcccCCCc--ceEEEec-HHHHHHh
Q 015729          156 --LSKVRKLLDEYRHPALFLVDGVSSICAID----F---RMDE-WGIDVALTGSQKALSLPTG--MGIVCAS-PKALEAS  222 (401)
Q Consensus       156 --l~~i~~l~~~~~~~~~li~D~a~~~~~~~----~---~~~~-~~~di~~~s~~K~l~g~~g--~G~l~~~-~~~~~~~  222 (401)
                        +++|+++|++  +|++||.|++|......    .   .... ....+.+.|.+|.++ .+|  +||++++ +++.+.+
T Consensus       183 ~~l~~i~~~a~~--~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~-mtGwRvG~~v~~~~~l~~~~  259 (393)
T COG0436         183 EELKAIVELARE--HDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYG-MTGWRIGWVVGPPEELIAAL  259 (393)
T ss_pred             HHHHHHHHHHHH--cCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEeccccccc-ccccceeEeecChHHHHHHH
Confidence              6778999999  99999999998643221    1   1111 134688889999984 554  7999999 6665555


Q ss_pred             ccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHc-CCccccCC
Q 015729          223 KTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFE-EGLENVIERHRRLGKATRLAVEAW-GLKNCTQK  300 (401)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~-~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~  300 (401)
                      ...+.                  +....++.....++.+||+.-.. ..++..++.+.++++.+.+.|.++ |+++..+.
T Consensus       260 ~~~~~------------------~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p  321 (393)
T COG0436         260 RKLKS------------------YLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPP  321 (393)
T ss_pred             HHHHH------------------hcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCC
Confidence            42110                  11223555555566666654322 235666688999999999999987 68887622


Q ss_pred             CccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~---~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                         ....+++..++...+..+++..|++++||.|.||....   ..+++||++..  +.++++++++++.+.++..
T Consensus       322 ---~Ga~Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~--~~~~l~~a~~rl~~~~~~~  392 (393)
T COG0436         322 ---EGAFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLAT--SEETLEEALRRLARFLAEY  392 (393)
T ss_pred             ---CeeEEEEeecCCCCCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEec--CHHHHHHHHHHHHHHHHhc
Confidence               23467778886656889999999999899999995533   34789998876  6699999999999988753

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=100.00  E-value=1.3e-32  Score=258.83  Aligned_cols=308  Identities=17%  Similarity=0.189  Sum_probs=239.9

Q ss_pred             ccccCCCcCChHHHHHHHccCcCC-----CC-Ccc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc
Q 015729           11 HLFVPGPVHIPDQVIRAMNRNNED-----YR-SPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT   80 (401)
Q Consensus        11 ~~~~~~p~~~~~~v~~a~~~~~~~-----~~-~~~----~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~   80 (401)
                      ||+.++.+++++.|++++.++...     +. ...    ..+.++++++.+++++|.++. .+++++|+|++++.++.++
T Consensus         1 yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~~~g~t~a~~~~l~~l   79 (353)
T TIGR03235         1 YLDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTE-EVIFTSGATESNNLAILGL   79 (353)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCCHHHHHHHHHHHH
Confidence            688888889999999999764311     11 111    235578999999999999764 4999999999999888776


Q ss_pred             C----CCC-CeEEEEcCCcchHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccccc
Q 015729           81 L----SPG-DRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN  154 (401)
Q Consensus        81 ~----~~g-d~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~  154 (401)
                      .    .+| +.|++...+|++.. .....+..|++++.++.+.++.+|++++++++++    +++++++++++|+||.+.
T Consensus        80 ~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~----~~~lv~~~~~~n~tG~~~  155 (353)
T TIGR03235        80 ARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIRP----DTLLVSIMHVNNETGSIQ  155 (353)
T ss_pred             HHhcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCC----CCEEEEEEcccCCceecc
Confidence            4    355 67888777777765 2234466799999999988888999999999864    569999999999999999


Q ss_pred             chHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccch
Q 015729          155 NLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW  234 (401)
Q Consensus       155 ~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~  234 (401)
                      |+++|.++|++  +|+++|+|++|++|..+++..++++|++++|+||++ +|+|+|+++++++.......   ...+...
T Consensus       156 ~~~~I~~l~~~--~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~-gp~g~g~l~~~~~~~~~~~~---~~~~~~~  229 (353)
T TIGR03235       156 PIREIAEVLEA--HEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKIY-GPKGIGALVIRKRGKPKAPL---KPIMFGG  229 (353)
T ss_pred             CHHHHHHHHHH--cCCEEEEEchhhcCCccccccccCCCEEEeehhhcC-CCCceEEEEEccCccccccc---CceeeCC
Confidence            99999999999  999999999999999999988889999999999985 78999999999885432110   0011100


Q ss_pred             HHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcC
Q 015729          235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVP  314 (401)
Q Consensus       235 ~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~  314 (401)
                       ...+.+     ..+|++...++++.++++.+. .+++++.++++++.+++++.|++.|+++..+.. ...+.++.|.+ 
T Consensus       230 -~~~~~~-----~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~-~~~~~i~~~~~-  300 (353)
T TIGR03235       230 -GQERGL-----RPGTLPVHLIVGMGEAAEIAR-RNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPA-ETIPHILNFSI-  300 (353)
T ss_pred             -CCcCcc-----ccCCCChHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhccCCeEEeCCcc-cccCCEEEEEe-
Confidence             001122     344688889999999999876 478889999999999999999888988875432 24456777777 


Q ss_pred             CCCCHHHHHHHHHhhCCeEEccCCCC
Q 015729          315 SHINSSEIVRRAWQRYNLSLGLGLNK  340 (401)
Q Consensus       315 ~~~~~~~l~~~L~~~~~i~v~~g~~~  340 (401)
                      ++.+.+++.+.|. + +|.+++|..+
T Consensus       301 ~~~~~~~v~~~L~-~-~i~v~~g~~~  324 (353)
T TIGR03235       301 DGVNSEALIVNLR-A-DAAVSTGSAC  324 (353)
T ss_pred             CCcCHHHHHHHHh-C-CeEEEchhhc
Confidence            4667889999995 4 8999888665

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=100.00  E-value=4.7e-31  Score=248.92  Aligned_cols=329  Identities=13%  Similarity=0.117  Sum_probs=243.8

Q ss_pred             CCcCChHHHHHHHccCcCCCCC---------ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCe
Q 015729           16 GPVHIPDQVIRAMNRNNEDYRS---------PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR   86 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~~~~---------~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~   86 (401)
                      .|.++.+++++++.++......         ........++++.+++++|.+   .+++++|+++++..++.+++++||+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~---~i~~~~g~t~al~~~l~~~~~~gd~   85 (361)
T cd06452           9 RGGRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMD---EARVTPGAREGKFAVMHSLCEKGDW   85 (361)
T ss_pred             cCCCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCCc---eEEEeCCHHHHHHHHHHHhcCCCCE
Confidence            4678899999999997743211         112245889999999999983   3899999999999999999999999


Q ss_pred             EEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCC--CCChHHHHHHHhccC---CCCceEEEEEecCCCcccccchHHHHH
Q 015729           87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE--GAKLDVLASKLAADT---AHTIKAICIVHNETATGVTNNLSKVRK  161 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~d~~~le~~~~~~~---~~~~~~i~~~~~~n~tG~~~~l~~i~~  161 (401)
                      |+++.++|++..  ..++..|++++.++.+.++  .+|++++++++++..   ..+++++++++++||+|.+.|+++|.+
T Consensus        86 Vl~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~  163 (361)
T cd06452          86 VVVDGLAHYTSY--VAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAK  163 (361)
T ss_pred             EEEcCCcchHHH--HHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHH
Confidence            999999888875  3477889999999988654  789999999886421   125789999999999999999999999


Q ss_pred             HhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHh
Q 015729          162 LLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFY  241 (401)
Q Consensus       162 l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (401)
                      +|++  +|+++|+|++|+.|..+++..++++|++++|+||+++++.++|+++++++.++++......   ++..      
T Consensus       164 ~~~~--~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~---~~~~------  232 (361)
T cd06452         164 VCHE--YGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQM---FKIK------  232 (361)
T ss_pred             HHHH--cCCeEEEECCcccCCcCCCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHHHHhccccc---cccc------
Confidence            9999  9999999999998887777777789999999999998777899999999998877543321   1100      


Q ss_pred             hcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCC-----
Q 015729          242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS-----  315 (401)
Q Consensus       242 ~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-----  315 (401)
                       .-.++..++....++++.++++.+.+. + +...+..++++++++.|+++ |++++...+  ....++.+..+.     
T Consensus       233 -~~~~~~~~~~~~~~~~~~~al~~~~~~-~-~~~~~~~~~~~~l~~~L~~l~g~~v~~~~~--~~~n~~~~~~~~~~~~~  307 (361)
T cd06452         233 -EVELLGCTLRGAPLVTLMASFPHVKER-V-KRWDEEVEKARWFVAELEKIEGIKQLGEKP--KNHDLMFFETPSFDEIA  307 (361)
T ss_pred             -eeeeeccccCchHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHhcCCCeEEECCCC--CCCceEEEEcCCcchhh
Confidence             001112234444445566666654332 2 23444455668899999998 888864322  133355566541     


Q ss_pred             ---CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          316 ---HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       316 ---~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                         .....++.+.|+++ ||.+.   ....++++|++..+ .+++|++.++++|++++
T Consensus       308 ~~~~~~~~~~~~~L~~~-gI~~~---~~~~~~~~ri~~~g-~~~e~~~~l~~al~~~~  360 (361)
T cd06452         308 KKHKRRGYFLYSELKKR-GIHGI---KPGLTRYFKLSTYG-LTWEQVEYVVDAFKEIA  360 (361)
T ss_pred             hhccccchhHHHHHHHc-CceEE---cCCCceEEEEEecC-CCHHHHHHHHHHHHHHh
Confidence               11223688999876 98842   22235689998755 69999999999998764

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=100.00  E-value=5.3e-31  Score=239.05  Aligned_cols=345  Identities=14%  Similarity=0.104  Sum_probs=244.5

Q ss_pred             CCCcccccCCCcCChHHHHHHHccCcC-----CCC-CccH--HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            7 PGKNHLFVPGPVHIPDQVIRAMNRNNE-----DYR-SPAV--PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~-----~~~-~~~~--~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      ++-.|++....++.+++|++++..+..     .|. .+.+  .+.+++.|+.+|+++|+++.+ |+||+|+|+++++++.
T Consensus        42 ~~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~d-IiFts~ATEs~Nlvl~  120 (428)
T KOG1549|consen   42 TRPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSD-IVFTSGATESNNLVLK  120 (428)
T ss_pred             CccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCc-EEEeCCchHHHHHHHH
Confidence            357899999999999999999998432     122 2443  344899999999999999877 9999999999999997


Q ss_pred             cc-CCCCC----eEEEEcCCcchHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccc
Q 015729           79 NT-LSPGD----RIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV  152 (401)
Q Consensus        79 ~~-~~~gd----~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~  152 (401)
                      .. ...+|    +|+++..+|.+.. +....+..|++++.+|++.++.+|.+.+++.++.    +|+++.+.+.+|..|+
T Consensus       121 ~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~----~T~lv~I~~Vnn~~gv  196 (428)
T KOG1549|consen  121 GVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRS----KTRLVSIMHVNNEIGV  196 (428)
T ss_pred             HhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCC----CceEEEEEecccCccc
Confidence            74 33445    8999999888887 5566777889999999998888999999999984    6799999999999999


Q ss_pred             ccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhc--cCCCCcc
Q 015729          153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK--TAKSVRV  230 (401)
Q Consensus       153 ~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~--~~~~~~~  230 (401)
                      +.|+++|.++|++  +++.+++|+||+.|..+.|..++++|++++|.|||+ |++|+|+++++++. .++.  +....+ 
T Consensus       197 ~~Pv~EI~~icr~--~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~y-gp~~iGaLYvr~~~-~~~~~~p~~~GG-  271 (428)
T KOG1549|consen  197 LQPVKEIVKICRE--EGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIY-GPPGIGALYVRRKR-PRLRVEPPLSGG-  271 (428)
T ss_pred             cccHHHHHHHhCc--CCcEEEeehhhhcCCccccHHHcCchheeeeccccc-CCCcceEEEEccCC-CcccccCcccCC-
Confidence            9999999999999  999999999999999999999999999999999988 57789999999821 1111  111111 


Q ss_pred             ccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCcee
Q 015729          231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTV  308 (401)
Q Consensus       231 ~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~  308 (401)
                           -..+.++.|     |.....+..+.+|.+...++. ........++.+.+...+.. . .....+..+. ..+..
T Consensus       272 -----gq~r~~rsG-----T~~~~~~~~~gsA~e~~~~~~-~~~~~~~~~~~~~ll~~i~~~~~~~~~~G~~~~-~~~~~  339 (428)
T KOG1549|consen  272 -----GQERGLRSG-----TVATPLAVGLGSAAEFVNKEM-AYDEAIIKRLSEKLLMGIGQSLPEVTLNGSGKS-RYPGL  339 (428)
T ss_pred             -----ccccccccC-----CcCchhhhhhHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhhCchhhccCCccc-ccccc
Confidence                 111334445     578888889999999887654 23333333455555554433 2 2222222111 22334


Q ss_pred             EEEEcC--CCCCHHHHHHHHHhhCCeE-----EccC-------C-CCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          309 TAVIVP--SHINSSEIVRRAWQRYNLS-----LGLG-------L-NKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       309 ~~~~~~--~~~~~~~l~~~L~~~~~i~-----v~~g-------~-~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +.+.+|  ++.....-.+.+.-+-+..     +.|.       . .......+|||+.-+++++|++++++.+++.++.+
T Consensus       340 ~~~~~~~~~g~~~~~~~~~~~l~s~~a~~~~~~epsy~l~~~G~~~~~~~~~iRis~G~y~t~~di~~~~~~i~~~v~~~  419 (428)
T KOG1549|consen  340 VSLSFPYVEGESLLMDLKDVALSSGSACTSASLEPSYVLRAIGVDEDLAHSSIRISIGRYTTEEDIDYLVDAIKKLVSLL  419 (428)
T ss_pred             eeeecccccCcchhhhhhhhhhcccchhhcCCCCcchhhhhcCcchhhhcceeEEeeeeeCcHHHHHHHHHHHHHHHHhc
Confidence            555554  2221110000000000111     0111       1 11223569999888999999999999999887643

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=100.00  E-value=2.6e-30  Score=245.19  Aligned_cols=329  Identities=15%  Similarity=0.111  Sum_probs=244.8

Q ss_pred             ccCCCcCChHHHHHHHccCcCC----CC-CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC----CC
Q 015729           13 FVPGPVHIPDQVIRAMNRNNED----YR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL----SP   83 (401)
Q Consensus        13 ~~~~p~~~~~~v~~a~~~~~~~----~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~----~~   83 (401)
                      |+...++..+.+++++.++...    .. .+...+...++++.+++++|.+.+. +++++|+++++..++.++.    ++
T Consensus        25 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~-~~~~~ggt~a~~~a~~~~~~~~~~~  103 (371)
T PRK13520         25 LSSMCTEPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAY-GYITSGGTEANIQAVRAARNLAKAE  103 (371)
T ss_pred             eeeeecCchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCC-eEEecCcHHHHHHHHHHHHhhccCC
Confidence            5555666777777777553321    11 1334555689999999999987654 7889999999988875543    35


Q ss_pred             CCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHh
Q 015729           84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLL  163 (401)
Q Consensus        84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~  163 (401)
                      +|+|++++++|++.  ...++..|++++.++.+.++.+|++++++.+++    +++.+++++++|++|.+.|+++|.++|
T Consensus       104 ~~~vl~~~~~h~s~--~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~~~vi~~~~~~~tG~~~~l~~I~~l~  177 (371)
T PRK13520        104 KPNIVVPESAHFSF--DKAADMLGVELRRAPLDDDYRVDVKAVEDLIDD----NTIGIVGIAGTTELGQVDPIPELSKIA  177 (371)
T ss_pred             CceEEecCcchHHH--HHHHHHcCceEEEecCCCCCcCCHHHHHHHHhh----CCEEEEEEcCCcCCcccCCHHHHHHHH
Confidence            78999999988764  466778899999999888778999999999975    457777888889999999999999999


Q ss_pred             hhcCCCcEEEEecccccCcce-------eccCcccceEEEecCCCcccCCCcceEEEe-cHHHHHHhccCCCCccccchH
Q 015729          164 DEYRHPALFLVDGVSSICAID-------FRMDEWGIDVALTGSQKALSLPTGMGIVCA-SPKALEASKTAKSVRVFFDWK  235 (401)
Q Consensus       164 ~~~~~~~~li~D~a~~~~~~~-------~~~~~~~~di~~~s~~K~l~g~~g~G~l~~-~~~~~~~~~~~~~~~~~~~~~  235 (401)
                      ++  +|+++++|++|+.+..+       ++....++|.+.+|+||+..++.++|++++ +++..+.+.... ......  
T Consensus       178 ~~--~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~~-~~~~~~--  252 (371)
T PRK13520        178 LE--NGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDT-PYLTSK--  252 (371)
T ss_pred             HH--cCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEEEEcCHHHHHhhcccC-ccccCC--
Confidence            99  99999999999866433       233345789999999998766667776665 555666553211 000000  


Q ss_pred             HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC
Q 015729          236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS  315 (401)
Q Consensus       236 ~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  315 (401)
                             ......+|++...++++.++++.+.+.|+++..++..++++++.+.|+++|+++....   .. .++.+.++ 
T Consensus       253 -------~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~-~~v~~~~~-  320 (371)
T PRK13520        253 -------KQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKERGFEPVIEP---VL-NIVAFDDP-  320 (371)
T ss_pred             -------CCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhCCCEEecCC---Cc-eEEEEecC-
Confidence                   0001123455556788899999887778888999999999999999998888733221   22 36667764 


Q ss_pred             CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          316 HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       316 ~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                        +..++.+.|.++ ||.+..+.   .++.+|+++..++|++|+++++++|+++++
T Consensus       321 --~~~~v~~~L~~~-gi~v~~~~---~~~~iRis~~~~~t~edi~~~~~~l~~~~~  370 (371)
T PRK13520        321 --NPDEVREKLRER-GWRVSVTR---CPEALRIVCMPHVTREHIENFLEDLKEVKK  370 (371)
T ss_pred             --CHHHHHHHHHHC-CceeccCC---CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence              577899999876 99887653   246799998888899999999999998764

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=100.00  E-value=3.1e-30  Score=242.68  Aligned_cols=331  Identities=14%  Similarity=0.129  Sum_probs=246.3

Q ss_pred             CCCCCCCCcccccCCCcCChHHHHHHHccCcCCCCC----ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 015729            2 DYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRS----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL   77 (401)
Q Consensus         2 ~~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~   77 (401)
                      +|++++++.||-.+-|..+-+++.+++.++...+.+    ....+...++++.+++++|.+.   .+++++|++++..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~---~iv~~sg~~a~~~~~   78 (349)
T cd06454           2 KVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEA---ALVFSSGYAANDGVL   78 (349)
T ss_pred             CceecccCCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCC---EEEeccHHHHHHHHH
Confidence            588999999999998877777777777654322111    2346778899999999999854   566677889998888


Q ss_pred             hccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccC-CCCceEEEEEecCCCcccccch
Q 015729           78 TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT-AHTIKAICIVHNETATGVTNNL  156 (401)
Q Consensus        78 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~-~~~~~~i~~~~~~n~tG~~~~l  156 (401)
                      .+++++||+|++..+.|++..  ..++..|++++.++.     .|++.+++.+++.. ..+++++++++++|++|...|+
T Consensus        79 ~~~~~~gd~Vl~~~~~~~~~~--~~~~~~g~~~~~~~~-----~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~  151 (349)
T cd06454          79 STLAGKGDLIISDSLNHASII--DGIRLSGAKKRIFKH-----NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPL  151 (349)
T ss_pred             HHhcCCCCEEEEehhhhHHHH--HHHHHcCCceEEecC-----CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCH
Confidence            888899999999988777643  345668998887752     47888999887531 1356888999999999999999


Q ss_pred             HHHHHHhhhcCCCcEEEEecccccCcce--------eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCC
Q 015729          157 SKVRKLLDEYRHPALFLVDGVSSICAID--------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV  228 (401)
Q Consensus       157 ~~i~~l~~~~~~~~~li~D~a~~~~~~~--------~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~  228 (401)
                      ++|.++|++  +|+++|+|++|+.|...        .+....+.|++++|.||+++ ++| |+++.++++.+.+..... 
T Consensus       152 ~~i~~~~~~--~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~g-G~i~~~~~~~~~~~~~~~-  226 (349)
T cd06454         152 PELVDLAKK--YGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFG-AVG-GYIAGSKELIDYLRSYAR-  226 (349)
T ss_pred             HHHHHHHHH--cCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhc-ccC-CEEECCHHHHHHHHHhch-
Confidence            999999999  99999999999866442        22234578999999999985 555 888888888776543211 


Q ss_pred             ccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCcee
Q 015729          229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV  308 (401)
Q Consensus       229 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~  308 (401)
                                 .+.    +.++.+...++++.++++...+  .+..++++.++.+++.+.|.++|++...+.    ...+
T Consensus       227 -----------~~~----~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~~~~  285 (349)
T cd06454         227 -----------GFI----FSTSLPPAVAAAALAALEVLQG--GPERRERLQENVRYLRRGLKELGFPVGGSP----SHII  285 (349)
T ss_pred             -----------hhh----ccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCcccCCC----CCcE
Confidence                       000    1123556666777888877655  366788999999999999998887765432    2233


Q ss_pred             EEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC---CCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       309 ~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~---~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      .++.++++.+..++.+.|.++ ||.+.++...   ..++++|+++..+++++|+++++++|+++
T Consensus       286 ~~~~~~~~~~~~~~~~~L~~~-gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         286 PPLIGDDPAKAVAFSDALLER-GIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             EEEeCCChHHHHHHHHHHHhC-CceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence            444444344677899999877 9998875321   12468999998889999999999999764

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=100.00  E-value=1.1e-29  Score=240.01  Aligned_cols=330  Identities=12%  Similarity=0.120  Sum_probs=236.6

Q ss_pred             CcCChHHHHHHHccCcCCCCC---------ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeE
Q 015729           17 PVHIPDQVIRAMNRNNEDYRS---------PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRI   87 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~~---------~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~v   87 (401)
                      ...+.+++.+++.++.....+         ......+.++++.+++++|.+.   +.+++|+++++..++.+++++||+|
T Consensus        17 ~g~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g~~~---~~i~~g~~~a~~~~~~~l~~~gd~V   93 (370)
T TIGR02539        17 GGVLTEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLGMDE---ARVTHGAREGKFAVMHALCKEGDWV   93 (370)
T ss_pred             CCCCcHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhCCCc---eEEECChHHHHHHHHHHhhCCCCEE
Confidence            456778888888886543211         1122357788999999999975   5678999999999999999999999


Q ss_pred             EEEcCCcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccC---CCCceEEEEEecCCCcccccchHHHHHH
Q 015729           88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADT---AHTIKAICIVHNETATGVTNNLSKVRKL  162 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~---~~~~~~i~~~~~~n~tG~~~~l~~i~~l  162 (401)
                      ++..+.|++..  ..++..|++++.++.+.  ++.+|++++++.+++.+   .+++++|++++++|++|.+.|+++|.++
T Consensus        94 l~~~~~h~s~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~l  171 (370)
T TIGR02539        94 VLDGLAHYTSY--VAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKV  171 (370)
T ss_pred             EECCcccHHHH--HHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHH
Confidence            99888888765  45688899999999763  45789999999986421   0257899999999999999999999999


Q ss_pred             hhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhh
Q 015729          163 LDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYN  242 (401)
Q Consensus       163 ~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (401)
                      |++  +|+++|+|++|+.|..+.+....++|+++.|+||+++++.++|++++++++++.+......   +.+..      
T Consensus       172 a~~--~~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~---~~~~~------  240 (370)
T TIGR02539       172 CRE--KGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRY---SPVKE------  240 (370)
T ss_pred             HHH--cCCeEEEECccccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccC---Cccce------
Confidence            999  9999999999999876656556678999999999997656689999999998887654321   11000      


Q ss_pred             cCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCC------
Q 015729          243 LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH------  316 (401)
Q Consensus       243 ~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------  316 (401)
                       ..++..++....++++.++++...+ .++. ..+..++.+++++.|+++|+++....+. .+ .++.+.+|.-      
T Consensus       241 -~~~~~~~~~~~~~~~~~~al~~~~~-~l~~-~~~~~~~~~~l~~~L~~~g~~~~~~~~s-~t-~~v~~~~~~~~~~~~~  315 (370)
T TIGR02539       241 -VELLGCTSRGAPIVTMMASFPHVVE-RVKR-WDEEVKKTRWFVAELEDIGFIQLGQKPK-EH-DLVKFETPGFHEIAQK  315 (370)
T ss_pred             -eeeecccccccHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHhCCcEEEccCCC-cC-ceEEEECCchhHHhhh
Confidence             0001112222233445555553222 2222 3334455678999999999887532222 23 3555666421      


Q ss_pred             --CCHHHHHHHHHhhCCeE-EccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          317 --INSSEIVRRAWQRYNLS-LGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       317 --~~~~~l~~~L~~~~~i~-v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                        .+...+.+.|.++ ||. ++++    ..+++|+++. ..+++|+++++++|+++++++
T Consensus       316 ~~~~~~~~~~~L~e~-GI~~ir~~----~~~~iRis~~-~~t~e~i~~l~~~L~~~~~~~  369 (370)
T TIGR02539       316 HKRRGYFLYEELKKR-GIHGIRSG----QTKYFKLSVY-GLTKEQVEYVVDSFEEIVEEY  369 (370)
T ss_pred             hccccHHHHHHHHhC-CCccccCC----cceEEEEEec-CCCHHHHHHHHHHHHHHHHhc
Confidence              1234688888877 996 5532    2458999875 469999999999999988763

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=100.00  E-value=1e-29  Score=242.91  Aligned_cols=334  Identities=15%  Similarity=0.104  Sum_probs=238.3

Q ss_pred             CCCCCCcccccCCCcCChHHHHHHHccCcCCC-CC---ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc
Q 015729            4 MYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDY-RS---PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN   79 (401)
Q Consensus         4 ~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~-~~---~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~   79 (401)
                      ..+.++.|+..+.+..+-+++.+++.++.... .+   .+..+...++++.+++++|.+.   +++++|+++|+..++.+
T Consensus        41 i~~~~~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~~~---~ii~~~~~~a~~~~~~~  117 (393)
T TIGR01822        41 LNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGTED---TILYASCFDANGGLFET  117 (393)
T ss_pred             EEeeCCCccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCc---EEEECchHHHHHHHHHH
Confidence            34455556555545555555566665532211 11   1235667899999999999854   66678899999998888


Q ss_pred             cCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCC--CceEEEEEecCCCcccccchH
Q 015729           80 TLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAH--TIKAICIVHNETATGVTNNLS  157 (401)
Q Consensus        80 ~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~--~~~~i~~~~~~n~tG~~~~l~  157 (401)
                      ++++||.|++..+.|++..  ...+..+.+.+.+.     ..|++++++.+++....  ++++|++.+++|++|.+.|++
T Consensus       118 l~~~gd~vi~~~~~~~s~~--~~~~~~~~~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~  190 (393)
T TIGR01822       118 LLGAEDAIISDALNHASII--DGVRLCKAKRYRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLD  190 (393)
T ss_pred             hCCCCCEEEEeccccHHHH--HHHHhcCCceEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHH
Confidence            9999999999999888765  23455666554443     25899999998752112  678899998999999999999


Q ss_pred             HHHHHhhhcCCCcEEEEecccccCccee---------ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCC
Q 015729          158 KVRKLLDEYRHPALFLVDGVSSICAIDF---------RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV  228 (401)
Q Consensus       158 ~i~~l~~~~~~~~~li~D~a~~~~~~~~---------~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~  228 (401)
                      +|.++|++  +|+++|+|++|+.|....         +.. .++|++++|.||+++|+ ..|++++++++.+.+......
T Consensus       191 ~i~~la~~--~~~~li~De~~~~g~~~~~~~~~~~~~~~~-~~~di~~~s~sK~l~g~-r~G~~~~~~~~~~~l~~~~~~  266 (393)
T TIGR01822       191 EICDLADK--YDALVMVDECHATGFLGPTGRGSHELCGVM-GRVDIITGTLGKALGGA-SGGFTTARKEVVELLRQRSRP  266 (393)
T ss_pred             HHHHHHHH--cCCEEEEECCccccCcCCCCCchHHhcCCC-CCCeEEEEEChHHhhCC-CcEEEEeCHHHHHHHHHhCcc
Confidence            99999999  999999999998664321         111 25899999999999755 459999999888776542110


Q ss_pred             ccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCcee
Q 015729          229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV  308 (401)
Q Consensus       229 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~  308 (401)
                                      ..+.++.+...++++.++++...  +.++.++++.++.+++.+.|++.|+++..+    .. .+
T Consensus       267 ----------------~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~-~~  323 (393)
T TIGR01822       267 ----------------YLFSNSLPPAVVGASIKVLEMLE--ASNELRDRLWANTRYFRERMEAAGFDIKPA----DH-PI  323 (393)
T ss_pred             ----------------ceecCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHcCCCCCCC----CC-CE
Confidence                            01122345555566677776653  346788899999999999998888776432    12 24


Q ss_pred             EEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC---CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       309 ~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~---~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                      +.+.+++..+..++++.|.++ ||.+.....+   .....+|+++..+++++|+++++++|+++++++|.
T Consensus       324 ~~i~~~~~~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~~~~  392 (393)
T TIGR01822       324 IPVMLYDAVLAQRFARRLLEE-GIYVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGRELGV  392 (393)
T ss_pred             EEEEeCCHHHHHHHHHHHHHC-CeeEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            555554434567899999877 9988733222   12245999988889999999999999999988764

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK06207 aspartate aminotransferase; Provisional

Probab=100.00  E-value=6.8e-30  Score=244.02  Aligned_cols=323  Identities=12%  Similarity=0.137  Sum_probs=225.7

Q ss_pred             cCChHHHHHHHccCcCC--CCCcc----HHHHHHHHHHHHHHHhcCC-CC-ceEEecCChhHHHHHHHhccCCCCCeEEE
Q 015729           18 VHIPDQVIRAMNRNNED--YRSPA----VPALTKTLLEDIKKIFKTT-SG-TPFLIPTTGTGAWESALTNTLSPGDRIIS   89 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~~--~~~~~----~~~~~~~l~~~la~~~g~~-~~-~~i~~~~g~t~a~~~~~~~~~~~gd~vl~   89 (401)
                      ...++.+.+++.+....  ..+|.    ..++.+.+.+.+++.+|.+ .+ +++++++|+++++..++.+++++||+|++
T Consensus        52 ~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~~~Gd~Vlv  131 (405)
T PRK06207         52 HEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVARGDKVAI  131 (405)
T ss_pred             CCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEE
Confidence            34556666666653221  11222    3334444444555555753 33 56999999999999999999999999999


Q ss_pred             EcCCcchHHHHHHHHHcCCcEEEEeCCC-----CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHH
Q 015729           90 FLIGQFSLLWIDQQQRLNFNVDVVESDW-----GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRK  161 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~-----~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~  161 (401)
                      ++|+|+.+.  ..++..|++++.++++.     ++.+|++++++++++    +++++++++|+||||.+++   +++|.+
T Consensus       132 ~~P~y~~~~--~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~----~~k~v~l~~P~NPTG~~~s~e~l~~l~~  205 (405)
T PRK06207        132 VQPDYFANR--KLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKA----GVRVFLFSNPNNPAGVVYSAEEIAQIAA  205 (405)
T ss_pred             eCCCchhHH--HHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhh----cCeEEEECCCCCCCCcCCCHHHHHHHHH
Confidence            999887654  56788899999998752     467899999998874    5689999999999999997   566888


Q ss_pred             HhhhcCCCcEEEEecccccCcc----eecc---C-cccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCcccc
Q 015729          162 LLDEYRHPALFLVDGVSSICAI----DFRM---D-EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFF  232 (401)
Q Consensus       162 l~~~~~~~~~li~D~a~~~~~~----~~~~---~-~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~  232 (401)
                      +|++  +|++||+|++|.....    ....   . .....+++.|.+|.++ .+.++|+++.++++.+++.....     
T Consensus       206 ~a~~--~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~~~l~~~~~~~~~-----  278 (405)
T PRK06207        206 LARR--YGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGSPAIIDRMEKLQA-----  278 (405)
T ss_pred             HHHH--cCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcCHHHHHHHHHHHh-----
Confidence            8888  9999999999875321    1111   1 1234588999999985 33447999999988777654211     


Q ss_pred             chHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEE
Q 015729          233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAV  311 (401)
Q Consensus       233 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~  311 (401)
                              .     +..+.+.....++..+++.- ...+++..+++.++++.+.+.|+++ ++++..+    ..+.++|+
T Consensus       279 --------~-----~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p----~gg~fl~~  340 (405)
T PRK06207        279 --------I-----VSLRAAGYSQAVLRTWFSEP-DGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAP----QAGSYLFP  340 (405)
T ss_pred             --------H-----hccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCC----CeeEEEEE
Confidence                    0     01112333333333333210 1125666777788888888888876 6665543    23568889


Q ss_pred             EcCC-CCCHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          312 IVPS-HINSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       312 ~~~~-~~~~~~l~~~L~~~~~i~v~~g~~--~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ++|. ..+..++.+.|.+++||.+.+|..  ...++++||++..  +++++++++++|.+.++++
T Consensus       341 ~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~--~~~~l~~al~rl~~~l~~~  403 (405)
T PRK06207        341 RLPRLAVSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ--DHAAAVAAAERIAQLIERY  403 (405)
T ss_pred             eCcccCCCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHHh
Confidence            9864 357788999998666999999953  2235789998875  7899999999999988764

>PRK07324 transaminase; Validated

Probab=99.98  E-value=1.1e-29  Score=240.15  Aligned_cols=315  Identities=17%  Similarity=0.120  Sum_probs=223.6

Q ss_pred             HHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHH
Q 015729           22 DQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWID  101 (401)
Q Consensus        22 ~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~  101 (401)
                      ++..+++.....   .+.......++|+.++++++.-.++++++++|+++|+..++.+++.+||+|+++.|+|.+..  .
T Consensus        45 ~~~~~~~~~~~~---~Y~~~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~--~  119 (373)
T PRK07324         45 EAFYQELGQKKL---TYGWIEGSPEFKEAVASLYQNVKPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQQLY--D  119 (373)
T ss_pred             HHHHHHHhcCCc---cCCCCCCCHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHH--H
Confidence            555566554222   23333456699999999986433355999999999999999999999999999999766543  5


Q ss_pred             HHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEEEEec
Q 015729          102 QQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDG  176 (401)
Q Consensus       102 ~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li~D~  176 (401)
                      .++..|++++.++++.+  +.+|++++++.+.    +++|++++++|+||||.+++   +++|.++|++  +|++||+|+
T Consensus       120 ~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~----~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~--~~~~ii~De  193 (373)
T PRK07324        120 IPESLGAEVDYWQLKEENGWLPDLDELRRLVR----PNTKLICINNANNPTGALMDRAYLEEIVEIARS--VDAYVLSDE  193 (373)
T ss_pred             HHHHcCCEEEEEecccccCCCCCHHHHHHhCC----CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHH--CCCEEEEEc
Confidence            67889999999998754  3579999998876    35799999999999999998   7788899999  999999999


Q ss_pred             ccccCcce---ecc-CcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCC
Q 015729          177 VSSICAID---FRM-DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP  251 (401)
Q Consensus       177 a~~~~~~~---~~~-~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  251 (401)
                      ++......   ... ......+.+.|.+|.++ .+.++|++++++++++.+...+...                  ..+.
T Consensus       194 ~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~~~~~li~~~~~~~~~~------------------~~~~  255 (373)
T PRK07324        194 VYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIAANEEVIDILRKYRDYT------------------MICA  255 (373)
T ss_pred             cccccccCCCCCChhhccCCEEEEecchhhcCCccceeEEEecCHHHHHHHHHHhCcE------------------EecC
Confidence            97643211   011 11123578889999885 2334699999988877765432110                  1122


Q ss_pred             cHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhC
Q 015729          252 SIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRY  330 (401)
Q Consensus       252 ~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  330 (401)
                      +.....++..+++.. +.-+++.++.++++.+.+.+.|.+. ++....+.    .+.++++.++.+.+..+++++|.++.
T Consensus       256 ~~~~q~~a~~~l~~~-~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~----gg~~~~i~~~~~~~~~~~~~~ll~~~  330 (373)
T PRK07324        256 GVFDDMLASLALEHR-DAILERNRKIVRTNLAILDEWVAKEPRVSYVKPK----AVSTSFVKLDVDMPSEDFCLKLLKET  330 (373)
T ss_pred             ChHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCC----ceEEEEEEeCCCCCHHHHHHHHHHhc
Confidence            332223333344321 1124566677778888888888776 55544432    23455666655567889999987666


Q ss_pred             CeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          331 NLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       331 ~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      ||.+.+|......+++||++..  +++.+++++++|++++++
T Consensus       331 gv~v~pg~~F~~~~~iRis~~~--~~~~l~~~l~rl~~~l~~  370 (373)
T PRK07324        331 GVLLVPGNRFDLEGHVRIGYCC--DTETLKKGLKKLSEFLRE  370 (373)
T ss_pred             CEEEECccccCCCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence            9999999654456799998765  689999999999999875

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.98  E-value=4.1e-29  Score=237.76  Aligned_cols=332  Identities=16%  Similarity=0.136  Sum_probs=238.2

Q ss_pred             CCCcccccCCC-cCChHHHHHHHccCcC--CC--C--CccHHHHHHHHHHHHHHHhcCC--CCceEEecCChhHHHHHHH
Q 015729            7 PGKNHLFVPGP-VHIPDQVIRAMNRNNE--DY--R--SPAVPALTKTLLEDIKKIFKTT--SGTPFLIPTTGTGAWESAL   77 (401)
Q Consensus         7 ~~~~~~~~~~p-~~~~~~v~~a~~~~~~--~~--~--~~~~~~~~~~l~~~la~~~g~~--~~~~i~~~~g~t~a~~~~~   77 (401)
                      ++...|..+-| .++++.+.+++.+...  ..  +  ..+..+....+++.+++.+|.+  +++.+++++|+++++..++
T Consensus        27 ~~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~  106 (389)
T PRK05957         27 PGTISLGQGVVSYPPPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAI  106 (389)
T ss_pred             CCeEEccCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHH
Confidence            34445555444 4577778888766321  11  1  1234566777888888888864  2456999999999999888


Q ss_pred             hccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc--
Q 015729           78 TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN--  155 (401)
Q Consensus        78 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~--  155 (401)
                      .+++.+||+|++++|+|+.+.  ..++..|++++.++.+.++.+|++++++.+++    +++++++++++||||.+++  
T Consensus       107 ~~~~~~gd~Vlv~~P~y~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~klv~~~~p~NPtG~~~~~~  180 (389)
T PRK05957        107 LAITDPGDEIILNTPYYFNHE--MAITMAGCQPILVPTDDNYQLQPEAIEQAITP----KTRAIVTISPNNPTGVVYPEA  180 (389)
T ss_pred             HHhcCCCCEEEEeCCCCcCHH--HHHHhcCCEEEEeecCCCCCcCHHHHHHhcCc----CceEEEEeCCCCCCCcCcCHH
Confidence            888999999999999877654  34577899999999887778999999998863    5799999999999999998  


Q ss_pred             -hHHHHHHhhhcCCCcEEEEecccccCcce-------ecc-CcccceEEEecCCCcccCCCc--ceEEEecHHHHHHhcc
Q 015729          156 -LSKVRKLLDEYRHPALFLVDGVSSICAID-------FRM-DEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKT  224 (401)
Q Consensus       156 -l~~i~~l~~~~~~~~~li~D~a~~~~~~~-------~~~-~~~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~  224 (401)
                       +++|.++|++  +|++||+|+++......       ... +.....+++.|.+|.+ |.+|  +|++++++++.+++..
T Consensus       181 ~~~~i~~~a~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~~~~~~~~  257 (389)
T PRK05957        181 LLRAVNQICAE--HGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAY-GFASWRIGYMVIPIHLLEAIKK  257 (389)
T ss_pred             HHHHHHHHHHH--cCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhc-cCccceeEEEecCHHHHHHHHH
Confidence             7788999999  99999999998633211       011 1223468889999988 4555  7999999998777654


Q ss_pred             CCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHc-CC-ccccCC
Q 015729          225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE--GLENVIERHRRLGKATRLAVEAW-GL-KNCTQK  300 (401)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~--g~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~  300 (401)
                      ...             .     +..+++..   ++..+...+.+.  .+++.++++.++++.+.+.|+++ ++ .+..+ 
T Consensus       258 ~~~-------------~-----~~~~~~~~---~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~-  315 (389)
T PRK05957        258 IQD-------------T-----ILICPPVV---SQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPA-  315 (389)
T ss_pred             HHh-------------h-----cccCCCcH---HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCC-
Confidence            210             0     01123332   223333333321  25667777888899999999886 43 33322 


Q ss_pred             CccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                         ..+.++|++++.+.+..++++.|.+++||.+.+|...  ..++++||++.. .+++++++++++|.+.++++
T Consensus       316 ---~gg~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~l~~~~~~l~~~~~~~  386 (389)
T PRK05957        316 ---NGAFYCFLKVNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGA-LQKATAKEGIERLVQGLKTI  386 (389)
T ss_pred             ---CeeEEEEEeCCCCCChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEec-CCHHHHHHHHHHHHHHHHhh
Confidence               3456788888777788899999986669999999532  224689998644 57899999999999888754

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.98  E-value=2.9e-29  Score=238.15  Aligned_cols=301  Identities=14%  Similarity=0.135  Sum_probs=226.7

Q ss_pred             ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC------CCCCeEEEEcCCcchHHHHHHHHHcCCcEE
Q 015729           38 PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL------SPGDRIISFLIGQFSLLWIDQQQRLNFNVD  111 (401)
Q Consensus        38 ~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~  111 (401)
                      +...+...++++.+++++|.++.+ +++++|+++++..++.++.      ++||+|+++.++|++.  ...++..|++++
T Consensus        55 ~~~~~~~~~~~~~la~~~g~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~--~~~~~~~G~~~~  131 (373)
T TIGR03812        55 PGTKKIEEEVVGSLGNLLHLPDAY-GYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSF--EKAAEMLGLELR  131 (373)
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCC-eEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHH--HHHHHHcCCeEE
Confidence            345566789999999999997654 6778899999887765432      4678999999988764  456788899999


Q ss_pred             EEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcce-------
Q 015729          112 VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID-------  184 (401)
Q Consensus       112 ~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~-------  184 (401)
                      .++.+.++.+|++++++.+++    ++..+++..++|+||.+.|+++|.++|++  +|+++|+|++|+.+..+       
T Consensus       132 ~v~~~~~~~~d~~~l~~~l~~----~~~~vv~~~~~~~tG~~~~~~~i~~l~~~--~~~~livD~a~~~~~~~~~~~~~~  205 (373)
T TIGR03812       132 YAPLDEDYTVDVKDVEDLIDD----NTIGIVGIAGTTELGQIDDIEELSKIALE--NGIYLHVDAAFGGFVIPFLKKGYN  205 (373)
T ss_pred             EEeeCCCCCcCHHHHHHHHhh----CcEEEEEECCCCCCCccCCHHHHHHHHHH--cCCeEEEEcCchhHHHHHHhcCCC
Confidence            999988888999999999975    33445555578999999999999999999  99999999999865432       


Q ss_pred             ---eccCcccceEEEecCCCcccCCCcce-EEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHH
Q 015729          185 ---FRMDEWGIDVALTGSQKALSLPTGMG-IVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLR  260 (401)
Q Consensus       185 ---~~~~~~~~di~~~s~~K~l~g~~g~G-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~  260 (401)
                         ++....++|++.+|+||+..++.++| +++.+++..+.+.... .  +...       .....+.++++...++++.
T Consensus       206 ~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~~~~-~--~~~~-------~~~~~~~gt~~~~~~~~~~  275 (373)
T TIGR03812       206 PPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSVDA-P--YLTV-------KKQATITGTRSGASAAATY  275 (373)
T ss_pred             CCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhcccC-c--ccCC-------CCCcceEeechhHHHHHHH
Confidence               33334578999999999765666666 4556777776653211 1  1000       0000112357777788899


Q ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC
Q 015729          261 AALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK  340 (401)
Q Consensus       261 ~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~  340 (401)
                      ++++.+.++|+++..++..++++++++.|+++|+.....  + .. .++.+.+|   +..++.+.|.++ ||.++.+.  
T Consensus       276 ~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~-~~-~~v~~~~~---~~~~v~~~L~~~-gi~v~~~~--  345 (373)
T TIGR03812       276 AVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVIE--P-VL-NIVAFEVD---DPEEVRKKLRDR-GWYVSVTR--  345 (373)
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcC--C-Cc-eEEEEEeC---CHHHHHHHHHHC-CceeccCC--
Confidence            999988788889999999999999999999987654332  1 23 35556664   356899999876 99987653  


Q ss_pred             CCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          341 VAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       341 ~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                       .+.++|+++..++|++|+|+++++|++
T Consensus       346 -~~~~iRis~~~~~t~edid~l~~~L~~  372 (373)
T TIGR03812       346 -CPKALRIVVMPHVTREHIEEFLEDLKE  372 (373)
T ss_pred             -CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence             246899999988999999999999975

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.98  E-value=1.5e-29  Score=241.69  Aligned_cols=316  Identities=13%  Similarity=0.050  Sum_probs=226.5

Q ss_pred             CChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhc----C--CCCceEEecCChhHHHHHHHhccCCCCCeEEEE
Q 015729           19 HIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFK----T--TSGTPFLIPTTGTGAWESALTNTLSPGDRIISF   90 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g----~--~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   90 (401)
                      +.++.+.+++.+....  .+++. .....++|+.++++++    .  ++++++++|+|+++|+..++.+++++||+|+++
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~  123 (399)
T PRK07681         45 PPADFVREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVP  123 (399)
T ss_pred             CCCHHHHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEEC
Confidence            4567777777764322  12222 2456678888888775    2  332569999999999999999999999999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhh
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE  165 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~  165 (401)
                      +|+|+.+.  ..++..|++++.++++++  +.+|++++++.+.    ++++++++++|+||||.+++   +++|.++|++
T Consensus       124 ~P~y~~~~--~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~----~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~  197 (399)
T PRK07681        124 DPGYTAYE--TGIQMAGATSYYMPLKKENDFLPDLELIPEEIA----DKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKK  197 (399)
T ss_pred             CCCccchH--HHHHhcCCEEEEEecCCCCCCcCCHHHHHHhcc----ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHH
Confidence            99877654  557789999999998754  3569999988876    35799999999999999998   5668888888


Q ss_pred             cCCCcEEEEecccccCcce----e---ccC-cccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHH
Q 015729          166 YRHPALFLVDGVSSICAID----F---RMD-EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKD  236 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~~~----~---~~~-~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~  236 (401)
                        +|++||+|++|......    .   ... .....+++.|.+|.++ .+.++|+++.++++.+.+.....         
T Consensus       198 --~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~~~l~~~~~~~~~---------  266 (399)
T PRK07681        198 --HNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGNEEIVRALTQFKS---------  266 (399)
T ss_pred             --cCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEecCHHHHHHHHHHHh---------
Confidence              99999999998743211    1   111 1234688899999984 33347999999988776653210         


Q ss_pred             HHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCC
Q 015729          237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH  316 (401)
Q Consensus       237 ~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~  316 (401)
                               ...++.+.....++.++++.-. ..+++.++.++++++.+.+.|++.|+++..+    ..+.++|+.+|++
T Consensus       267 ---------~~~~~~s~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p----~~g~f~~~~l~~~  332 (399)
T PRK07681        267 ---------NTDYGVFLPIQKAACAALRNGA-AFCEKNRGIYQERRDTLVDGFRTFGWNVDKP----AGSMFVWAEIPKG  332 (399)
T ss_pred             ---------hcccCCCHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHCCCcccCC----CeeeEEEEECCCC
Confidence                     0112243433333333333211 1256667778888889999998888765433    2456888999777


Q ss_pred             CCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          317 INSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       317 ~~~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      .+..++...|.+++||.+.+|...  ...+++||++..  +++++++++++|++
T Consensus       333 ~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~--~~~~~~~~l~~l~~  384 (399)
T PRK07681        333 WTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQ--DEEVLQQAVENIRN  384 (399)
T ss_pred             CCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence            778899999987669999998432  224689998764  78999999999987

>PRK07179 hypothetical protein; Provisional

Probab=99.98  E-value=3.5e-29  Score=239.84  Aligned_cols=333  Identities=14%  Similarity=0.111  Sum_probs=241.8

Q ss_pred             CCCCCCCcccccCCCcCChHHHHHHHccCcCC-C---CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            3 YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNED-Y---RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         3 ~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~-~---~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      +.++.++.||....-..+-+++.+++.+.+.. +   ..........++++.+++++|.+.   +++++||++|+..++.
T Consensus        56 ~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~---~~~~~sG~~An~~~l~  132 (407)
T PRK07179         56 AIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFES---CLLCQSGWAANVGLLQ  132 (407)
T ss_pred             EEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHH
Confidence            34667788888886555566666666554211 1   111122467789999999999864   6789999999999999


Q ss_pred             ccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHH
Q 015729           79 NTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSK  158 (401)
Q Consensus        79 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~  158 (401)
                      ++..+||.|++...+|.+..  ..++..|++++.++.     .|+++++++++++   ++++|++++++|++|.+.|+++
T Consensus       133 ~l~~~g~~v~~~~~~h~s~~--~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~---~~~lV~v~~v~n~tG~i~pl~~  202 (407)
T PRK07179        133 TIADPNTPVYIDFFAHMSLW--EGVRAAGAQAHPFRH-----NDVDHLRRQIERH---GPGIIVVDSVYSTTGTIAPLAD  202 (407)
T ss_pred             HhCCCCCEEEEECCcCHHHH--HHHHHCCCeEEEecC-----CCHHHHHHHHHhc---CCeEEEECCCCCCCCccccHHH
Confidence            99999999999888877664  334556777665542     3899999999742   3588899999999999999999


Q ss_pred             HHHHhhhcCCCcEEEEecccccCcce---------eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCc
Q 015729          159 VRKLLDEYRHPALFLVDGVSSICAID---------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR  229 (401)
Q Consensus       159 i~~l~~~~~~~~~li~D~a~~~~~~~---------~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~  229 (401)
                      |.++|++  +|+++|+|++|+.|...         ++.. .++|+++.|.+|+++ + ++|++++++++.+.+...... 
T Consensus       203 I~~l~~~--~~~~livDea~~~g~~g~~g~g~~~~~~~~-~~vdi~~~S~sK~~g-~-~~G~l~~~~~~~~~~~~~~~~-  276 (407)
T PRK07179        203 IVDIAEE--FGCVLVVDESHSLGTHGPQGAGLVAELGLT-SRVHFITASLAKAFA-G-RAGIITCPRELAEYVPFVSYP-  276 (407)
T ss_pred             HHHHHHH--cCCEEEEECcccccCcCCCCCchHHhcCCC-CCCCEEEeechHhhh-c-cCeEEEeCHHHHHHHHHhCcC-
Confidence            9999999  99999999999876421         1111 246999999999995 4 369999998876655422110 


Q ss_pred             cccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeE
Q 015729          230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVT  309 (401)
Q Consensus       230 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~  309 (401)
                                    + .+.++.+...++++.++++.+...  +..+++++++.+++++.|+++|+++..     .+ .++
T Consensus       277 --------------~-~~~~t~~~~~~aa~~aal~~~~~~--~~~~~~l~~~~~~l~~~L~~~g~~v~~-----~~-~i~  333 (407)
T PRK07179        277 --------------A-IFSSTLLPHEIAGLEATLEVIESA--DDRRARLHANARFLREGLSELGYNIRS-----ES-QII  333 (407)
T ss_pred             --------------e-eeCCCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCCCC-----CC-CEE
Confidence                          0 113345566666777778776442  567889999999999999998876653     12 466


Q ss_pred             EEEcCCCCCHHHHHHHHHhhCCeEEccCCCC---CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCCCCC
Q 015729          310 AVIVPSHINSSEIVRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVK  378 (401)
Q Consensus       310 ~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~---~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~~~~  378 (401)
                      ++.++...+...+.+.|.++ ||.+.....+   ...+.+||++...+|++|+++++++|++++++.++++-
T Consensus       334 ~l~~~~~~~~~~~~~~L~~~-GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~~~~~~  404 (407)
T PRK07179        334 ALETGSERNTEVLRDALEER-NVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARDEVDLWFW  404 (407)
T ss_pred             EEEeCCHHHHHHHHHHHHHC-CceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCcC
Confidence            67764333456677788766 9874322211   12468999999999999999999999999998877643

>PRK02769 histidine decarboxylase; Provisional

Probab=99.97  E-value=5.8e-29  Score=232.99  Aligned_cols=327  Identities=17%  Similarity=0.142  Sum_probs=247.4

Q ss_pred             CcccccCCCcCChHHHHHHHccCc----CC-CC----CccHHHHHHHHHHHHHHHhcCCCCc-eEEecCChhHHHHHHHh
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNN----ED-YR----SPAVPALTKTLLEDIKKIFKTTSGT-PFLIPTTGTGAWESALT   78 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~----~~-~~----~~~~~~~~~~l~~~la~~~g~~~~~-~i~~~~g~t~a~~~~~~   78 (401)
                      +.++..|.....+.+.++.+....    .. ..    +....+..+++++.+++++|.++++ ..++|+|||+++..++.
T Consensus        23 ~~~~g~p~~~~~~~~~~~~~~~~~~~n~gnp~~~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~  102 (380)
T PRK02769         23 YFNVGYPEAADFDYSALKRFFSFSINNCGDPYSKSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCY  102 (380)
T ss_pred             hcccCCCchhhcCHHHHHHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHH
Confidence            455556666655444444443321    11 11    1134567889999999999997544 35899999999887664


Q ss_pred             cc--CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccch
Q 015729           79 NT--LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL  156 (401)
Q Consensus        79 ~~--~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l  156 (401)
                      ..  +.++++|+++..+|++..  +.++..|++.+.|+.++++.+|+++|++++++++ .+|.+|++++++|.+|.+.|+
T Consensus       103 ~ar~~~~~~~ii~s~~~H~Sv~--ka~~~lg~~~~~V~~~~~g~id~~~L~~~i~~~~-~~t~lvv~t~gtt~tG~idpi  179 (380)
T PRK02769        103 LARELFPDGTLYYSKDTHYSVS--KIARLLRIKSRVITSLPNGEIDYDDLISKIKENK-NQPPIIFANIGTTMTGAIDNI  179 (380)
T ss_pred             HHHHhCCCcEEEeCCCceehHH--HHHHHcCCCCceeccCCCCcCcHHHHHHHHHhCC-CCcEEEEEEeCCCCCcccCCH
Confidence            32  457789999999999875  5677889988999988888899999999998763 568999999999999999999


Q ss_pred             HHHHHHhhhcCCC---cEEEEecccccCcce-------eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCC
Q 015729          157 SKVRKLLDEYRHP---ALFLVDGVSSICAID-------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK  226 (401)
Q Consensus       157 ~~i~~l~~~~~~~---~~li~D~a~~~~~~~-------~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~  226 (401)
                      ++|.++|++  +|   +++++|+|++.+..+       +++.. ++|.+++|+||++++|.|+|+++++++..+.+... 
T Consensus       180 ~~I~~i~~~--~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~-~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~-  255 (380)
T PRK02769        180 KEIQEILKK--IGIDDYYIHADAALSGMILPFVNNPPPFSFAD-GIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVD-  255 (380)
T ss_pred             HHHHHHHHH--hCCCceEEEEEecccceeecccCccccCCccC-CCCEEEECCcccCCCCCCcEEEEEehhhhhhcccC-
Confidence            999999999  76   799999999988775       56655 89999999999998899999999999887765431 


Q ss_pred             CCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCc
Q 015729          227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD  306 (401)
Q Consensus       227 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~  306 (401)
                        ..|...      .  ...+.+|.+...+++++++++.+...|+++..++..++++++.+.|++.|++++...   .+.
T Consensus       256 --~~yl~~------~--d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~g~~~~~~p---~~~  322 (380)
T PRK02769        256 --VDYIGS------R--DQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQANGIPAWRNP---NSI  322 (380)
T ss_pred             --ccccCC------C--CCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEcCC---Cce
Confidence              112110      0  112355687778899999999999999999999999999999999998888887632   233


Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          307 TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       307 ~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                       ++.|..|.    .++.    +  |..+.+-     ...+|+.+...++++.+|.+++.+.+.+.
T Consensus       323 -~v~f~~~~----~~~~----~--~w~l~~~-----~~~~hi~~~~~~~~~~~~~f~~dl~~~~~  371 (380)
T PRK02769        323 -TVVFPCPS----ERIW----K--KWHLATS-----GNQAHIITMPHHNKQQIDSLIDELIFDLK  371 (380)
T ss_pred             -EEEEcCCC----HHHH----h--CeeEccc-----CCEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence             45555432    2332    2  4333211     34899999999999999999999988765

>PLN00175 aminotransferase family protein; Provisional

Probab=99.97  E-value=2.4e-29  Score=240.56  Aligned_cols=319  Identities=17%  Similarity=0.106  Sum_probs=226.2

Q ss_pred             ChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHh----cCC--CCceEEecCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           20 IPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT--SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----g~~--~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      .++.+.+++.+.... ...|.......++|+.+++++    |.+  +.+.+++|+|+++|+..++.+++++||+|++++|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P  147 (413)
T PLN00175         68 GPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAP  147 (413)
T ss_pred             CCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCC
Confidence            456666666553221 122333334556777776666    432  3335999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHcCCcEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCC
Q 015729           93 GQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRH  168 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~  168 (401)
                      .|..+  ...++..|++++.++++. ++.+|++++++++..    +++++++++|+||||.+++   +++|.++|++  +
T Consensus       148 ~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~----~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~--~  219 (413)
T PLN00175        148 FYDSY--EATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTS----KTRAILINTPHNPTGKMFTREELELIASLCKE--N  219 (413)
T ss_pred             CchhH--HHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCc----CceEEEecCCCCCCCcCCCHHHHHHHHHHHHH--c
Confidence            76554  356778899999999864 467899999999863    5799999999999999996   5668888888  9


Q ss_pred             CcEEEEecccccCcce------eccCc-ccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHH
Q 015729          169 PALFLVDGVSSICAID------FRMDE-WGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF  240 (401)
Q Consensus       169 ~~~li~D~a~~~~~~~------~~~~~-~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
                      +++||+|++|......      ..... .+..+++.|.+|.++ .+.++|++++++++.+.+.....             
T Consensus       220 ~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~l~~~l~~~~~-------------  286 (413)
T PLN00175        220 DVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHS-------------  286 (413)
T ss_pred             CcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCHHHHHHHHHHHh-------------
Confidence            9999999998754321      11111 245788899999995 33457999999988776643210             


Q ss_pred             hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcC-CCC-C
Q 015729          241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVP-SHI-N  318 (401)
Q Consensus       241 ~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~~~-~  318 (401)
                           +...+.+.....++.++++.- +..+++.++++.++++.+.+.|++.|+.+..+    ..+.++|+.++ .+. +
T Consensus       287 -----~~~~~~s~~~Q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p----~g~~f~~~~~~~~~~~~  356 (413)
T PLN00175        287 -----FLTFATATPMQWAAVAALRAP-ESYYEELKRDYSAKKDILVEGLKEVGFKVYPS----SGTYFVMVDHTPFGFEN  356 (413)
T ss_pred             -----hccCCCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCeecCC----CeeEEEEEeccccCCCC
Confidence                 001223443334444444321 12367788889999999999999888776543    23457778773 244 4


Q ss_pred             HHHHHHHHHhhCCeEEccCCCC-----CCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          319 SSEIVRRAWQRYNLSLGLGLNK-----VAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~~-----~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      ..++++.|.+++||.+.||...     ...+++||++..  +++++++++++|++.++
T Consensus       357 ~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~--~~e~l~~~~~rL~~~~~  412 (413)
T PLN00175        357 DIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCK--DEETLRAAVERMKTKLK  412 (413)
T ss_pred             HHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcC--CHHHHHHHHHHHHHHHh
Confidence            6789999887779999998432     124689998864  79999999999998875

>PRK07682 hypothetical protein; Validated

Probab=99.97  E-value=3e-29  Score=238.17  Aligned_cols=321  Identities=15%  Similarity=0.136  Sum_probs=225.3

Q ss_pred             ChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHhc----CC--CCceEEecCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           20 IPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFK----TT--SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~g----~~--~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      .++.+.+++.+.... ...+.......++|+.++++++    .+  +++++++++|+++|+..++.+++++||+|++++|
T Consensus        34 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vl~~~p  113 (378)
T PRK07682         34 TPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEP  113 (378)
T ss_pred             CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEeCC
Confidence            344455555442211 1122223345577777777664    32  3335999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcC
Q 015729           93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR  167 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~  167 (401)
                      +|+.+  ...++..|.+++.++.+.  ++.+|++++++++.+    +++++++++|+||||.+++   +++|.++|++  
T Consensus       114 ~y~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~--  185 (378)
T PRK07682        114 SFVSY--APLVTLAGGVPVPVATTLENEFKVQPAQIEAAITA----KTKAILLCSPNNPTGAVLNKSELEEIAVIVEK--  185 (378)
T ss_pred             Cchhh--HHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCc----ccEEEEEECCCCCcCcCcCHHHHHHHHHHHHH--
Confidence            87754  356777899999888753  457899999998863    5699999999999999986   6778888998  


Q ss_pred             CCcEEEEecccccCccee------ccCc-ccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHH
Q 015729          168 HPALFLVDGVSSICAIDF------RMDE-WGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIK  239 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~~~------~~~~-~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (401)
                      +++++|+|++|......-      .... ....+++.|.+|.++ .+.++|++++++++++.+.....            
T Consensus       186 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~i~~l~~~~~------------  253 (378)
T PRK07682        186 HDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQ------------  253 (378)
T ss_pred             cCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCHHHHHHHHHHHH------------
Confidence            999999999987543210      1111 135688999999984 23347999999998887653210            


Q ss_pred             HhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcC-CCCC
Q 015729          240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVP-SHIN  318 (401)
Q Consensus       240 ~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~  318 (401)
                       +     ...+.+.....++..+++.- ...+++.+++++++++.+.+.|++.|+++..++    .+.++|+.++ .+.+
T Consensus       254 -~-----~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~----g~~~~~~~~~~~~~~  322 (378)
T PRK07682        254 -Y-----SMMCAPTMAQFAALEALRAG-NDDVIRMRDSYRKRRNFFVTSFNEIGLTCHVPG----GAFYAFPSISSTGLS  322 (378)
T ss_pred             -h-----hccCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHCCCccCCCC----eeEEEEEeccCCCCC
Confidence             0     01123343333333344311 112567788889999999999999887765442    3456777763 3567


Q ss_pred             HHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          319 SSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ..++.+.|.++.||.+.+|...  ..++++||++..  +++++++++++|+++++++
T Consensus       323 ~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~  377 (378)
T PRK07682        323 SEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT--SLEQLQEAMKRMKRFVENK  377 (378)
T ss_pred             HHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCC--CHHHHHHHHHHHHHHHhhc
Confidence            8889988875569999998432  235789998765  7899999999999998753

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.97  E-value=6.6e-29  Score=236.94  Aligned_cols=332  Identities=14%  Similarity=0.054  Sum_probs=234.4

Q ss_pred             CcccccCC--CcCChHHHHHHHccCcC--CCCCccHHHHHHHHHHHHHHHh----cCC---CCceEEecCChhHHHHHHH
Q 015729            9 KNHLFVPG--PVHIPDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIF----KTT---SGTPFLIPTTGTGAWESAL   77 (401)
Q Consensus         9 ~~~~~~~~--p~~~~~~v~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~----g~~---~~~~i~~~~g~t~a~~~~~   77 (401)
                      +.+.++.|  +...++.+.+++.+...  ....+. .....++|+.+++++    |.+   ++++|++|+|+++++..++
T Consensus        45 ~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~~~~Y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~  123 (410)
T PRK06290         45 ELIDMGVGEPDEMADESVVEVLCEEAKKPENRGYA-DNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLP  123 (410)
T ss_pred             CeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC-CCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHH
Confidence            34445443  44456667777765321  111222 245668888888876    432   3335999999999999999


Q ss_pred             hccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc
Q 015729           78 TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN  155 (401)
Q Consensus        78 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~  155 (401)
                      .+++++||.|+++.|+|+.+.  ..++..|++++.++++.+  +.+|++++++.+..    +++++++++|+||||.+++
T Consensus       124 ~~~~~~gd~Vlv~~P~y~~~~--~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~----~~k~i~l~nP~NPTG~v~s  197 (410)
T PRK06290        124 SCFINPGDVTLMTVPGYPVTG--THTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKE----KAKLLYLNYPNNPTGAVAT  197 (410)
T ss_pred             HHhCCCCCEEEEeCCCCccHH--HHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcc----cceEEEEECCCCCCCcCCC
Confidence            999999999999999877653  567788999999998764  45689999988863    5799999999999999998


Q ss_pred             h---HHHHHHhhhcCCCcEEEEecccccCcce---e---ccC-cccceEEEecCCCccc-CCCcceEEEecHHHHHHhcc
Q 015729          156 L---SKVRKLLDEYRHPALFLVDGVSSICAID---F---RMD-EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKT  224 (401)
Q Consensus       156 l---~~i~~l~~~~~~~~~li~D~a~~~~~~~---~---~~~-~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~  224 (401)
                      .   ++|.++|++  +|++||+|++|......   .   ... ....++++.|.+|.++ .+.++|+++.++++.+.+..
T Consensus       198 ~e~l~~l~~la~~--~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~~~l~~~l~~  275 (410)
T PRK06290        198 KEFYEEVVDFAKE--NNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNELIVKAFAT  275 (410)
T ss_pred             HHHHHHHHHHHHH--cCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhheEeEEeCHHHHHHHHH
Confidence            4   667788888  99999999998743211   1   111 1245799999999983 23346999999988776653


Q ss_pred             CCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHcCCccccCCCcc
Q 015729          225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEW  303 (401)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  303 (401)
                      ...                  .+..+.+.....++..++   .... .++.++++.++++.+.+.|++.|+.+..+    
T Consensus       276 ~~~------------------~~~~~~~~~~q~aa~~~l---~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p----  330 (410)
T PRK06290        276 VKD------------------NNDSGQFIAIQKAGIYAL---DHPEITEKIREKYSRRLDKLVKILNEVGFKAEMP----  330 (410)
T ss_pred             HHh------------------ccccCCcHHHHHHHHHHh---hCcHHHHHHHHHHHHHHHHHHHHHHhCCCeecCC----
Confidence            211                  011122222223333333   2222 56678888899999999999888765543    


Q ss_pred             CCceeEEEEcCCCC-------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecc-cCCHHHHHHHHHHHHHHHHhcCC
Q 015729          304 FSDTVTAVIVPSHI-------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       304 ~~~~~~~~~~~~~~-------~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~-~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                      ..+.++|+.+|++.       +..++++.|.++.++.+.++...  ++++||++.. ..++++.+++++++++.|+++..
T Consensus       331 ~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~--~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~~~  408 (410)
T PRK06290        331 GGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDA--GHFLRFSVTFEAKDEEEEDRILEEIKRRLSDVEF  408 (410)
T ss_pred             CeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCccc--cCeEEEEEEcccccccchhHHHHHHHHHHhhccc
Confidence            34567788887543       67789999998867777776542  5799998764 45788999999999999987754


Q ss_pred             C
Q 015729          376 P  376 (401)
Q Consensus       376 ~  376 (401)
                      .
T Consensus       409 ~  409 (410)
T PRK06290        409 E  409 (410)
T ss_pred             c
Confidence            3

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.97  E-value=2.3e-29  Score=236.33  Aligned_cols=318  Identities=14%  Similarity=0.118  Sum_probs=230.7

Q ss_pred             CcccccC--CCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCe
Q 015729            9 KNHLFVP--GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR   86 (401)
Q Consensus         9 ~~~~~~~--~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~   86 (401)
                      ....|+.  .|.+.++++++++.+.......+.... ..++|+.++++++.+++ ++++++|+++++..++.+++++||+
T Consensus        20 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~~-~~~lr~~ia~~~~~~~~-~i~~~~G~~~~l~~~~~~l~~~gd~   97 (346)
T TIGR01141        20 EVIKLNSNENPFGPPPKAKEALRAEADKLHRYPDPD-PAELKQALADYYGVDPE-QILLGNGSDEIIELLIRAFLEPGDA   97 (346)
T ss_pred             ceEEccCCCCCCCCCHHHHHHHHHhHHHhhcCCCCC-HHHHHHHHHHHhCcChH-HEEEcCCHHHHHHHHHHHhcCCCCE
Confidence            3444543  377788899999987542221222112 36899999999997654 4999999999999888888899999


Q ss_pred             EEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhc
Q 015729           87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY  166 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~  166 (401)
                      |++++++|..+  ...++..|++++.++.+.++.+|++++++++.    ++++++++++++||||.+.|++++.++|+.+
T Consensus        98 v~~~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~  171 (346)
T TIGR01141        98 VLVPPPTYSMY--EISAKIHGAEVVKVPLDEDGQLDLEDILVAID----DKPKLVFLCSPNNPTGNLLSRSDIEAVLERT  171 (346)
T ss_pred             EEEcCCCHHHH--HHHHHHcCCeEEEeccCCCCCCCHHHHHHhcC----CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC
Confidence            99999975433  34567789999999998887889999999765    4679999999999999999999999999983


Q ss_pred             CCCcEEEEecccccCcce---ecc-CcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHh
Q 015729          167 RHPALFLVDGVSSICAID---FRM-DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFY  241 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~~---~~~-~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (401)
                      .+++++|+|++|+.....   .+. .....++++.|.+|+++ ++.++|++++++++.+++.....              
T Consensus       172 ~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--------------  237 (346)
T TIGR01141       172 PEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRA--------------  237 (346)
T ss_pred             CCCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCHHHHHHHHhccC--------------
Confidence            359999999998732211   111 11234577889999983 23347999999998877754311              


Q ss_pred             hcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHH
Q 015729          242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSS  320 (401)
Q Consensus       242 ~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (401)
                            .++.+...+.++.++++..  ..+++.++++.++++.+++.|++. |+++...     .+.++++.++.  +..
T Consensus       238 ------~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-----~g~~~~~~~~~--~~~  302 (346)
T TIGR01141       238 ------PFNLSRLAQAAAIAALRDD--DFIEKTVEEINAERERLYDGLKKLPGLEVYPS-----DANFVLIRFPR--DAD  302 (346)
T ss_pred             ------CCCCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhcCCCEECCC-----cCCEEEEecCC--CHH
Confidence                  1123333333333333321  136778888999999999999987 7775432     23577888864  678


Q ss_pred             HHHHHHHhhCCeEEccCCCC-CCCcEEEEeecccCCHHHHHHHHHHHH
Q 015729          321 EIVRRAWQRYNLSLGLGLNK-VAGKVFRIGHLGHLNELQLLGCLAGVE  367 (401)
Q Consensus       321 ~l~~~L~~~~~i~v~~g~~~-~~~~~~Ri~~~~~~~~~di~~~~~~i~  367 (401)
                      ++.++|.++ ||.+.++... ..++++|+++.   +++|+++++++|+
T Consensus       303 ~~~~~L~~~-gI~v~~g~~f~~~~~~iRls~~---~~~~i~~~~~~l~  346 (346)
T TIGR01141       303 ALFEALLEK-GIIVRDLNSYPGLPNCLRITVG---TREENDRFLAALR  346 (346)
T ss_pred             HHHHHHHHC-CeEEEeCCCcCCCCCeEEEecC---CHHHHHHHHHHhC
Confidence            899999865 9999988542 12678999854   7899999998873

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.97  E-value=4.3e-29  Score=237.81  Aligned_cols=325  Identities=13%  Similarity=0.093  Sum_probs=226.4

Q ss_pred             CChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHhcC------CCCceEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKT------TSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~g~------~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      ..++.+.+++.+.... ...+.......++++.++++++.      ++++++++++|+++|+.+++.+++.+||+|++.+
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~  122 (391)
T PRK07309         43 TTPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPA  122 (391)
T ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeC
Confidence            3455566666543221 11232233456778888877752      2334699999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCCCC-CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcC
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR  167 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~  167 (401)
                      |+|.++.  ..++..|++++.++.+.+ +.+|++++++++++.+ ++++++++++|+||||.+++   +++|.++|++  
T Consensus       123 p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~--  197 (391)
T PRK07309        123 PAYPGYE--PIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQG-DKLKAVILNYPANPTGVTYSREQIKALADVLKK--  197 (391)
T ss_pred             CCCcchH--HHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccC-CCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHH--
Confidence            9877653  567788999999998654 4689999999987532 36799999999999999986   6778888888  


Q ss_pred             CCcEEEEecccccCcce----eccC--cccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHH
Q 015729          168 HPALFLVDGVSSICAID----FRMD--EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF  240 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~~----~~~~--~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
                      +|+++|+|+++......    .+..  .....+++.|.+|.++ .+.++|++++++++++.+.....             
T Consensus       198 ~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~~~~~~-------------  264 (391)
T PRK07309        198 YDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQ-------------  264 (391)
T ss_pred             cCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeCHHHHHHHHHHHh-------------
Confidence            99999999998753321    1111  1134588899999984 23347999999998776653210             


Q ss_pred             hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCC--C
Q 015729          241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI--N  318 (401)
Q Consensus       241 ~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~  318 (401)
                      +.     ..+++.....++..+++... ......++++.++++.+.+.|++.|+++..+    ..+.++|+++|.+.  +
T Consensus       265 ~~-----~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p----~gg~~~~~~l~~~~~~~  334 (391)
T PRK07309        265 YL-----VTAATTMAQFAAVEALTNGK-DDALPMKKEYIKRRDYIIEKMTDLGFKIIKP----DGAFYIFAKIPAGYNQD  334 (391)
T ss_pred             hc-----ccCCChHHHHHHHHHHhCCh-hHHHHHHHHHHHHHHHHHHHHHHCCCeecCC----CeeEEEEEECCCCCCCC
Confidence            00     11233333333333333211 1124456777888888999998888766554    23456778887553  4


Q ss_pred             HHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          319 SSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~--~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ..++++.|.++.||.+.+|..  ...++++||++..  +.+++++++++|+++++++
T Consensus       335 ~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~--~~~~l~~~i~~l~~~~~~~  389 (391)
T PRK07309        335 SFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAA--SMETIKEAMKRLKEYMEEH  389 (391)
T ss_pred             HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--CHHHHHHHHHHHHHHHHhh
Confidence            667887766556999999853  3346789998775  6889999999999998764

>PRK08960 hypothetical protein; Provisional

Probab=99.97  E-value=4.6e-29  Score=237.51  Aligned_cols=332  Identities=14%  Similarity=0.058  Sum_probs=230.2

Q ss_pred             CCcccccCCCc-CChHHHHHHHccCcCCC-CCccHHHHHHHHHHHHHHHhc----CC-CCceEEecCChhHHHHHHHhcc
Q 015729            8 GKNHLFVPGPV-HIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFK----TT-SGTPFLIPTTGTGAWESALTNT   80 (401)
Q Consensus         8 ~~~~~~~~~p~-~~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~g----~~-~~~~i~~~~g~t~a~~~~~~~~   80 (401)
                      +..++..+.|. ++++.+.+++.+..... ..+.......++|+.++++++    .. .++++++|+|+++|+..++.++
T Consensus        33 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~  112 (387)
T PRK08960         33 DVIHLEIGEPDFTTAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLL  112 (387)
T ss_pred             CeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHh
Confidence            33455555555 56888888887744321 223333456688888888874    22 3456999999999999999999


Q ss_pred             CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchH-
Q 015729           81 LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS-  157 (401)
Q Consensus        81 ~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~-  157 (401)
                      +.+||+|++++|+|+.+.  ..++..|.+++.++++.+  +.+|++++++.+++    +++++++++|+||||.+++.+ 
T Consensus       113 ~~~gd~vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~----~~~~i~i~~p~NPtG~~~~~~~  186 (387)
T PRK08960        113 VDPGKHWLLADPGYPCNR--HFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNA----DTVGALVASPANPTGTLLSRDE  186 (387)
T ss_pred             cCCCCEEEEcCCCCcchH--HHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCc----cceEEEEECCCCCCCcCcCHHH
Confidence            999999999999888765  456667899999988654  36899999998874    458899999999999999855 


Q ss_pred             --HHHHHhhhcCCCcEEEEecccccCcce---eccCcc-cceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCc
Q 015729          158 --KVRKLLDEYRHPALFLVDGVSSICAID---FRMDEW-GIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVR  229 (401)
Q Consensus       158 --~i~~l~~~~~~~~~li~D~a~~~~~~~---~~~~~~-~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~  229 (401)
                        +|.++|++  +|+++|+|++|......   ...... ...+++.|.+|.++ .+|  +|++++++++++.+.....  
T Consensus       187 ~~~l~~~~~~--~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~~~~~~~~~~~~~~~~~--  261 (387)
T PRK08960        187 LAALSQALRA--RGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFG-MTGWRLGWLVAPPAAVPELEKLAQ--  261 (387)
T ss_pred             HHHHHHHHHH--cCCEEEEEccccccccCCCCCChhhccCCEEEEeecccccC-CcccEEEEEEcCHHHHHHHHHHHh--
Confidence              56667888  99999999998643211   011111 23578899999884 444  7999999988776643210  


Q ss_pred             cccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeE
Q 015729          230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVT  309 (401)
Q Consensus       230 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~  309 (401)
                                .+      ..+.+.....++.+++..-....+++.++++.++++.+.+.|++.|+.+... +  ..+.++
T Consensus       262 ----------~~------~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~-p--~g~~f~  322 (387)
T PRK08960        262 ----------NL------YISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRELGFGIAVE-P--QGAFYL  322 (387)
T ss_pred             ----------hh------ccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcC-C--CeeEEE
Confidence                      00      1123333333333343211112356677788888899999998877654321 1  235678


Q ss_pred             EEEcCC-CCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          310 AVIVPS-HINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       310 ~~~~~~-~~~~~~l~~~L~~~~~i~v~~g~~~~---~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      |+++|+ ..+..++++.|.+++||.+.+|....   .++++|+++..  +.++++.++++|+++++
T Consensus       323 ~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~--~~~~l~~al~~l~~~~~  386 (387)
T PRK08960        323 YADISAFGGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ--SLPRLQEAVERIARGLR  386 (387)
T ss_pred             EEeccccCCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHh
Confidence            888865 35778898888766699999984322   24689998775  67889999998887764

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.97  E-value=7e-29  Score=236.31  Aligned_cols=322  Identities=17%  Similarity=0.132  Sum_probs=227.1

Q ss_pred             CcCChHHHHHHHccCcCCC-CCccHHHHHHHHHHHHHHH----hcCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEE
Q 015729           17 PVHIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKI----FKTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISF   90 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~----~g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   90 (401)
                      +.+.++.+.+++.+..... ..+.......++|+.++++    +|.. .++++++++|+++|+..++..++++||+|+++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~vl~~  114 (382)
T PRK06108         35 DLPTPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAV  114 (382)
T ss_pred             CCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhcCCCCEEEEe
Confidence            3455777888877643221 1122223344555555555    4632 33559999999999999998899999999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeCCCC---CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhh
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVESDWG---EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLD  164 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~---~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~  164 (401)
                      .|+|+.+.  ..++..|++++.++.+.+   +.+|++++++.++.    +++++++++|+||||.+++   +++|.++|+
T Consensus       115 ~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~----~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~  188 (382)
T PRK06108        115 TPLWPNLV--AAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITP----RTRALFINSPNNPTGWTASRDDLRAILAHCR  188 (382)
T ss_pred             CCCccchH--HHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCc----cceEEEEECCCCCCCcccCHHHHHHHHHHHH
Confidence            99876553  567788999999998642   35899999998863    5689999999999999986   567888888


Q ss_pred             hcCCCcEEEEecccccCcce--------eccCc-ccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccch
Q 015729          165 EYRHPALFLVDGVSSICAID--------FRMDE-WGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDW  234 (401)
Q Consensus       165 ~~~~~~~li~D~a~~~~~~~--------~~~~~-~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~  234 (401)
                      +  +|+++|+|++|+.....        .+... ....+++.|.+|.++ ++.++|++++++++.+.+....        
T Consensus       189 ~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~~~--------  258 (382)
T PRK06108        189 R--HGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKLI--------  258 (382)
T ss_pred             H--CCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHHHHHHHHHHH--------
Confidence            8  99999999998754321        11211 235688999999884 2345799999998877665321        


Q ss_pred             HHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEc
Q 015729          235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV  313 (401)
Q Consensus       235 ~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~  313 (401)
                           .+  .   ...++.....++..+++.. ...+++.+++++++++.+.+.|+++ |+++..+    ..+.++++.+
T Consensus       259 -----~~--~---~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p----~~g~~~~~~l  323 (382)
T PRK06108        259 -----EY--N---TSCVAQFVQRAAVAALDEG-EDFVAELVARLRRSRDHLVDALRALPGVEVAKP----DGAMYAFFRI  323 (382)
T ss_pred             -----Hh--c---ccCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCC----CeeEEEEEeC
Confidence                 00  0   1123343333334444321 1125677888889999999999887 7776543    2456778888


Q ss_pred             CCCCCHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          314 PSHINSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       314 ~~~~~~~~l~~~L~~~~~i~v~~g~~--~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      +...+..++++.|.+++||.+.+|..  ....+++|+++..  +++++++++++|+++++
T Consensus       324 ~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~  381 (382)
T PRK06108        324 PGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR--DPARLDEAVERLRRFLA  381 (382)
T ss_pred             CCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence            76567788999987767999998843  2235789998876  89999999999988764

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.97  E-value=7.9e-29  Score=235.77  Aligned_cols=316  Identities=14%  Similarity=0.084  Sum_probs=222.1

Q ss_pred             CChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhc----CC--CCceEEecCChhHHHHHHHhccCCCCCeEEEE
Q 015729           19 HIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFK----TT--SGTPFLIPTTGTGAWESALTNTLSPGDRIISF   90 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g----~~--~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   90 (401)
                      ..++.+.+++.+....  ...+.......++|+.++++++    .+  .++.+++++|+++++..++..++++||+|+++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~~gd~vlv~  121 (383)
T TIGR03540        42 PTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVP  121 (383)
T ss_pred             CCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEEe
Confidence            4466777777653211  1122223335577777777764    32  33358889999999999999999999999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhh
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE  165 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~  165 (401)
                      +|+|+.+.  ..++..|++++.++.+.+  ..+|++++++.+.    ++++++++++|+||||.+++   +++|.++|++
T Consensus       122 ~P~y~~~~--~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~----~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~  195 (383)
T TIGR03540       122 DPGYPVYR--IGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIA----KKAKLMFINYPNNPTGAVAPLKFFKELVEFAKE  195 (383)
T ss_pred             CCCCcchH--HHHHhcCCEEEEEecCcccCCccCHHHHHhhcc----ccceEEEEeCCCCCcCccCCHHHHHHHHHHHHH
Confidence            99877654  457789999999998653  4569999998886    35799999999999999998   5778888998


Q ss_pred             cCCCcEEEEecccccCcc----eec---cCc-ccceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchH
Q 015729          166 YRHPALFLVDGVSSICAI----DFR---MDE-WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWK  235 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~~----~~~---~~~-~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~  235 (401)
                        +|++||+|++|.....    ...   ... ....+++.|.+|.+ |.+|  +|+++.++++.+++.....        
T Consensus       196 --~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-g~~GlRiG~~i~~~~l~~~~~~~~~--------  264 (383)
T TIGR03540       196 --YNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTY-NMTGWRIGMAVGNADLIAGLGKVKT--------  264 (383)
T ss_pred             --cCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEeccccc-CCccceeeEEeCCHHHHHHHHHHHH--------
Confidence              9999999999863221    111   111 23467889999988 4555  7999999988776643210        


Q ss_pred             HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC
Q 015729          236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS  315 (401)
Q Consensus       236 ~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  315 (401)
                          ..      ..+.+.....++.++++.. ...+++.++++.++++.+.+.|++.|+.+..+    ..+.++++++|+
T Consensus       265 ----~~------~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~----~~~~~~~~~l~~  329 (383)
T TIGR03540       265 ----NV------DSGVFQAIQYAAIAALNGP-QDVVKEIRKIYQRRRDLLLEALKKIGIDVEKP----KATFYVWVPVPE  329 (383)
T ss_pred             ----hc------ccCCChHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhCCCEecCC----CcceEEEEECCC
Confidence                00      1112332233333333321 12256678888899999999999888766543    245678889887


Q ss_pred             CCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          316 HINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       316 ~~~~~~l~~~L~~~~~i~v~~g~~~~--~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      +.+..++...|.+++||.+.+|....  ..+++||++..  +++++++++++|++
T Consensus       330 ~~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~  382 (383)
T TIGR03540       330 GYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTV--PDERLEEAVARIKK  382 (383)
T ss_pred             CCCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecC--CHHHHHHHHHHHhh
Confidence            77888999998766699999984422  24689998853  67888888887753

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PLN02483 serine palmitoyltransferase

Probab=99.97  E-value=1.2e-28  Score=239.17  Aligned_cols=339  Identities=14%  Similarity=0.154  Sum_probs=244.0

Q ss_pred             CCCCCCcccccCCC-cCChHHHHHHHccCcCCC----CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            4 MYAPGKNHLFVPGP-VHIPDQVIRAMNRNNEDY----RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         4 ~~~~~~~~~~~~~p-~~~~~~v~~a~~~~~~~~----~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      ..+...+||-.+.| ...++++.+++.++....    ..+.......++++.+++++|.+.  .+++ ++|..++..++.
T Consensus       103 ~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~--ai~~-~~G~~an~~~i~  179 (489)
T PLN02483        103 LNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPA--AIVF-GMGYATNSTIIP  179 (489)
T ss_pred             EEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCCCc--EEEE-CCHHHHHHHHHH
Confidence            44566788888865 557789999999976432    123456788999999999999654  2454 556777777788


Q ss_pred             ccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccC---CCC-----ce-EEEEEecCCC
Q 015729           79 NTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT---AHT-----IK-AICIVHNETA  149 (401)
Q Consensus        79 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~---~~~-----~~-~i~~~~~~n~  149 (401)
                      +++++||.|++.++.|.+..  ..++..|++++.++.+     |++++++.+++..   ..+     .+ ++++.+..|+
T Consensus       180 al~~~Gd~Vi~d~~~h~s~~--~~~~~~Ga~v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~  252 (489)
T PLN02483        180 ALIGKGGLIISDSLNHNSIV--NGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSM  252 (489)
T ss_pred             HhCCCCCEEEEcchhhHHHH--HHHHHcCCeEEEEeCC-----CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCC
Confidence            89999999999999888765  4567889999999855     5677776665310   011     24 4455556699


Q ss_pred             cccccchHHHHHHhhhcCCCcEEEEecccccCcce---------eccCcccceEEEecCCCcccCCCcceEEEecHHHHH
Q 015729          150 TGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID---------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE  220 (401)
Q Consensus       150 tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~---------~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~  220 (401)
                      +|.+.++++|.++|++  +|++||+|++|+.+...         ++....++|++++|.+|+++ +.| |++++++++++
T Consensus       253 ~G~~~~l~~I~~la~~--~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g-~~G-G~i~~~~~li~  328 (489)
T PLN02483        253 EGELCKLPEIVAVCKK--YKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFG-SCG-GYIAGSKELIQ  328 (489)
T ss_pred             CCcccCHHHHHHHHHH--cCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcc-cCc-eEEEcCHHHHH
Confidence            9999999999999999  99999999999865421         22223467999999999994 666 99999999888


Q ss_pred             HhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh-c---HHHHHHHHHHHHHHHHHHHHHcCCcc
Q 015729          221 ASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-G---LENVIERHRRLGKATRLAVEAWGLKN  296 (401)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~-g---~~~~~~~~~~~~~~l~~~L~~~g~~~  296 (401)
                      .+.....                +..+..+.++..+.++.++++.+... +   ..+.+++++++.+++++.|+++|+.+
T Consensus       329 ~l~~~~~----------------~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~G~~v  392 (489)
T PLN02483        329 YLKRTCP----------------AHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMGFEV  392 (489)
T ss_pred             HHHHhCc----------------cccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence            7764321                11112234444445566777766532 1   34567889999999999999988876


Q ss_pred             ccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC---CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          297 CTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~---~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ....   .+ .++++.+....+..++++.|+++ ||.+.+..++   .....+||++...++++|+++++++|+++++.+
T Consensus       393 ~~~~---~s-p~~~l~l~~~~~~~~~~~~Ll~~-GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~  467 (489)
T PLN02483        393 LGDN---DS-PVMPIMLYNPAKIPAFSRECLKQ-NVAVVVVGFPATPLLLARARICISASHSREDLIKALEVISEVGDLV  467 (489)
T ss_pred             cCCC---CC-CEEEEEECCHHHHHHHHHHHHHC-CcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence            5432   12 35555543333556899999876 9988854322   223579999888899999999999999999988


Q ss_pred             CCCC
Q 015729          374 GYPV  377 (401)
Q Consensus       374 ~~~~  377 (401)
                      +...
T Consensus       468 ~~~~  471 (489)
T PLN02483        468 GIKY  471 (489)
T ss_pred             Ccee
Confidence            7764

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.97  E-value=7.2e-29  Score=236.22  Aligned_cols=317  Identities=14%  Similarity=0.065  Sum_probs=222.8

Q ss_pred             cCChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHh----cC--CCCceEEecCChhHHHHHHHhccCCCCCeEEE
Q 015729           18 VHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIF----KT--TSGTPFLIPTTGTGAWESALTNTLSPGDRIIS   89 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~----g~--~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~   89 (401)
                      .+.++.+.+++.+....  ...+.......++++.+++++    |.  ++++.+++|+|+++|+..++..++++||+|++
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~  122 (385)
T PRK09276         43 LPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLV  122 (385)
T ss_pred             CCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEE
Confidence            34566777777664321  112222233567778887777    43  23334888999999999999999999999999


Q ss_pred             EcCCcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccch---HHHHHHhh
Q 015729           90 FLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLLD  164 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l---~~i~~l~~  164 (401)
                      ++|+|+.+.  ..++..|++++.++.+.+  ..+|++++++.+.    ++++++++++|+||||.+++.   ++|.++|+
T Consensus       123 ~~P~y~~~~--~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~----~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~  196 (385)
T PRK09276        123 PDPGYPVYK--IGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVA----KKAKLMFINYPNNPTGAVADLEFFEEVVDFAK  196 (385)
T ss_pred             cCCCCcChH--HHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcc----ccceEEEEeCCCCCCCCCCCHHHHHHHHHHHH
Confidence            999877654  457778999999998643  4578999988876    357999999999999999985   67788888


Q ss_pred             hcCCCcEEEEecccccCcc----ee---ccCc-ccceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccch
Q 015729          165 EYRHPALFLVDGVSSICAI----DF---RMDE-WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDW  234 (401)
Q Consensus       165 ~~~~~~~li~D~a~~~~~~----~~---~~~~-~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~  234 (401)
                      +  +|++||+|++|.....    ..   .... .+..+++.|.+|.+ |.+|  +|++++++++.+.+.....       
T Consensus       197 ~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~i~~~~l~~~~~~~~~-------  266 (385)
T PRK09276        197 K--YDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTY-NMTGWRIGFAVGNADLIAGLGKVKS-------  266 (385)
T ss_pred             H--CCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhc-CCcchhheeeeCCHHHHHHHHHHHh-------
Confidence            8  9999999999874321    11   1111 23568889999988 4555  7999999988776653210       


Q ss_pred             HHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcC
Q 015729          235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVP  314 (401)
Q Consensus       235 ~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~  314 (401)
                           ..      ..+.+.....++..+++.. ...+++.++++.++++.+.+.|++.|+++..+    ..+.++++++|
T Consensus       267 -----~~------~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~----~~~~~~~v~~~  330 (385)
T PRK09276        267 -----NV------DSGVFQAIQEAGIAALNGP-QEVVEELRKIYQERRDILVEGLRKLGLEVEPP----KATFYVWAPVP  330 (385)
T ss_pred             -----hc------cCCCCHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC----CcceEEEEECC
Confidence                 00      1112332233333343321 22356778888888999999999887766543    24456888887


Q ss_pred             CCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          315 SHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       315 ~~~~~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      ++.+..++.+.|.+++||.+.+|...  ...+++||++..  +++++++++++|.+
T Consensus       331 ~~~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~  384 (385)
T PRK09276        331 KGYTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTV--PDERIEEAVERIKK  384 (385)
T ss_pred             CCCCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCC--CHHHHHHHHHHHhh
Confidence            77788899999876669999998432  224689998753  78888888888753

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.97  E-value=1e-28  Score=236.90  Aligned_cols=333  Identities=17%  Similarity=0.136  Sum_probs=227.8

Q ss_pred             CCCCcccccCCCcCChHHHHHHHccCcCCC----CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC
Q 015729            6 APGKNHLFVPGPVHIPDQVIRAMNRNNEDY----RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL   81 (401)
Q Consensus         6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~----~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~   81 (401)
                      +..+.||-.+.+..+-+++.+++.+.....    ..+...+...++++.+++++|.+.   .+++++|++|+..++..+.
T Consensus        51 ~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~~---~i~~~sG~~a~~~~i~~l~  127 (410)
T PRK13392         51 WCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKES---ALLFTSGYVSNDAALSTLG  127 (410)
T ss_pred             EECCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCCC---EEEECcHHHHHHHHHHHHh
Confidence            344556655544444444444444432211    112233457799999999999643   4555667888887776553


Q ss_pred             --CCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHH
Q 015729           82 --SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKV  159 (401)
Q Consensus        82 --~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i  159 (401)
                        .+||.|++....|++..  ..++..|++++.++.+     |.+.+++.+.....+++++|++++++||+|.+.|+++|
T Consensus       128 ~~~~g~~vi~~~~~h~s~~--~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i  200 (410)
T PRK13392        128 KLLPGCVILSDALNHASMI--EGIRRSGAEKQVFRHN-----DLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAI  200 (410)
T ss_pred             cCCCCCEEEEehhhhHHHH--HHHHHcCCeEEEEeCC-----CHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHH
Confidence              47887777665555543  3456678887776532     56677777654332478999999999999999999999


Q ss_pred             HHHhhhcCCCcEEEEecccccCcceec------c--CcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccc
Q 015729          160 RKLLDEYRHPALFLVDGVSSICAIDFR------M--DEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF  231 (401)
Q Consensus       160 ~~l~~~~~~~~~li~D~a~~~~~~~~~------~--~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~  231 (401)
                      .++|++  +|+++|+|++|+.|.....      .  ....+|+++.|.+|+++ ..| |+++++++.++.+.....    
T Consensus       201 ~~l~~~--~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g-~~G-G~~~~~~~~~~~l~~~~~----  272 (410)
T PRK13392        201 CDLADR--YNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFG-CLG-GYIAASADLIDFVRSFAP----  272 (410)
T ss_pred             HHHHHH--cCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhh-ccc-chhhcCHHHHHHHHHhCc----
Confidence            999999  9999999999986543110      0  01146889999999995 555 899888888776553211    


Q ss_pred             cchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEE
Q 015729          232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAV  311 (401)
Q Consensus       232 ~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~  311 (401)
                                  +..+..+.++..++++.++++.....  ...++++.++++++++.|+++|+++..+    ..+ ++.+
T Consensus       273 ------------~~~~s~~~~~~~~~a~~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~-~~~i  333 (410)
T PRK13392        273 ------------GFIFTTALPPAVAAGATAAIRHLKTS--QTERDAHQDRVAALKAKLNANGIPVMPS----PSH-IVPV  333 (410)
T ss_pred             ------------chhccCcCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCCCCC----CCC-EEEE
Confidence                        10112234445567778888866543  3456778899999999999988876543    233 3444


Q ss_pred             EcCCCCCHHHHHHHHHhhCCeEEccCCCC---CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          312 IVPSHINSSEIVRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       312 ~~~~~~~~~~l~~~L~~~~~i~v~~g~~~---~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                      .+++..+..++++.|+++.||.+.+...+   ....++|++++..+|++|+|+++++|++++++++.
T Consensus       334 ~~~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~~~  400 (410)
T PRK13392        334 MVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDRLEL  400 (410)
T ss_pred             EeCCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            45433245688888875569999876432   12367999999889999999999999999998887

>PRK09105 putative aminotransferase; Provisional

Probab=99.97  E-value=1.1e-28  Score=232.80  Aligned_cols=318  Identities=12%  Similarity=0.029  Sum_probs=228.5

Q ss_pred             CCcccccCC-CcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCe
Q 015729            8 GKNHLFVPG-PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR   86 (401)
Q Consensus         8 ~~~~~~~~~-p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~   86 (401)
                      +..++.... |.++++.+++++.+.......+.... ..++++.+++++|.+++ +|++++|+++++..++.+++++||+
T Consensus        44 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~~-~~~Lr~aia~~~~v~~e-~I~it~Gs~~ai~~~~~~l~~~gd~  121 (370)
T PRK09105         44 GAVFLNANECPLGPSPAARDAAARSAALSGRYDLEL-EDDLRTLFAAQEGLPAD-HVMAYAGSSEPLNYAVLAFTSPTAG  121 (370)
T ss_pred             CcEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhCcChh-hEEEcCChHHHHHHHHHHHcCCCCE
Confidence            344455443 56678888888876432211222222 77999999999998764 5999999999999999999999999


Q ss_pred             EEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhc
Q 015729           87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY  166 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~  166 (401)
                      |++++|+|+.+.  ..++..|++++.++.+.++.+|++++++. .    .+++++++++|+||||.+++.+++.++++.+
T Consensus       122 Vli~~P~y~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~-~----~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~  194 (370)
T PRK09105        122 LVTADPTYEAGW--RAADAQGAPVAKVPLRADGAHDVKAMLAA-D----PNAGLIYICNPNNPTGTVTPRADIEWLLANK  194 (370)
T ss_pred             EEEeCCChHHHH--HHHHHcCCeEEEecCCCCCCCCHHHHHhc-C----CCCCEEEEeCCCCCCCcCcCHHHHHHHHHhC
Confidence            999999766553  56788999999999887778899998875 2    3568999999999999999999998888764


Q ss_pred             CCCcEEEEecccccCcce---eccCccc-ceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHH
Q 015729          167 RHPALFLVDGVSSICAID---FRMDEWG-IDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKF  240 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~~---~~~~~~~-~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
                      +++++||+|++|......   .+....+ ..+++.|.+|++ |.+|  +|+++++++.++.+...               
T Consensus       195 ~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~-g~~GlRiG~~v~~~~~i~~l~~~---------------  258 (370)
T PRK09105        195 PAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLY-GMAGMRLGLAAARPDLLAKLARF---------------  258 (370)
T ss_pred             CCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhh-cCCccceeeeecCHHHHHHHHhc---------------
Confidence            468999999998532211   1111112 347778999998 4555  79999999887766532               


Q ss_pred             hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHH
Q 015729          241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSS  320 (401)
Q Consensus       241 ~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (401)
                         +   .++.+...+.++.+++..  ...++..++++.++++.+.+.|++.|+++..+    ..+ ++++.++  .+..
T Consensus       259 ---~---~~~~~~~~~~aa~~~L~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~----~~~-f~~~~~~--~~~~  323 (370)
T PRK09105        259 ---G---HNPLPVPAAAAGLASLRD--PKLVPQRRAENAAVREDTIAWLKKKGYKCTPS----QAN-CFMVDVK--RPAK  323 (370)
T ss_pred             ---C---CCCcCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCC----CCc-EEEEeCC--CCHH
Confidence               1   112444333333344431  22356677888899999999999888776543    233 4446663  3678


Q ss_pred             HHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          321 EIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       321 ~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      ++.+.|.++ ||.+..++. ..++++|+++.   ++++++++++++++++
T Consensus       324 ~l~~~L~~~-gI~v~~~~~-~~~~~~Ris~~---~~~~~~~l~~al~~~~  368 (370)
T PRK09105        324 AVADAMAKQ-GVFIGRSWP-IWPNWVRVTVG---SEEEMAAFRSAFAKVM  368 (370)
T ss_pred             HHHHHHHHC-CcEEecCCC-CCCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence            899999877 999854432 23578999754   5788999999998765

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.97  E-value=6.5e-29  Score=237.82  Aligned_cols=343  Identities=15%  Similarity=0.053  Sum_probs=232.1

Q ss_pred             ccccCCCcCChHHHHHHHccCcCC--CCC-------ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHH-HHHhcc
Q 015729           11 HLFVPGPVHIPDQVIRAMNRNNED--YRS-------PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWE-SALTNT   80 (401)
Q Consensus        11 ~~~~~~p~~~~~~v~~a~~~~~~~--~~~-------~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~-~~~~~~   80 (401)
                      .+...-|...+|.++++.......  ++.       ....+...++++.+++++|.+..+ +.++++++.+.+ .+..+.
T Consensus        24 ~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~-v~~~~~g~~~~~~~~~~~~  102 (398)
T cd00613          24 FLGSGTYKHNPPAVIKRNILENEFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVAN-ASLQDEATAAAEAAGLAAI  102 (398)
T ss_pred             cccccccCCcCcHHHHHHhccccCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccc-eeccCchHHHHHHHHHHHH
Confidence            444445666666666554433311  111       224456778999999999986543 666665554444 444455


Q ss_pred             CCC--CCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccch
Q 015729           81 LSP--GDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL  156 (401)
Q Consensus        81 ~~~--gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l  156 (401)
                      +.+  ||+|+++.+.|.++.  +....+..|++++.++.+.++.+|++++++++.    ++++++++++++ ++|.+.|.
T Consensus       103 ~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~----~~t~~viv~~~~-~~G~~~~~  177 (398)
T cd00613         103 RAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVS----EEVAALMVQYPN-TLGVFEDL  177 (398)
T ss_pred             hcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcC----CCeEEEEEECCC-CCceecch
Confidence            665  999999999777765  222223345899999987777789999999886    357999999875 89999885


Q ss_pred             -HHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCccc----CCCcceEEEecHHHHHHhccCCC----
Q 015729          157 -SKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALS----LPTGMGIVCASPKALEASKTAKS----  227 (401)
Q Consensus       157 -~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~----g~~g~G~l~~~~~~~~~~~~~~~----  227 (401)
                       ++|.++|++  +|+++|+|++|+.+....+....++|++++|+||++.    |++++|++++++++.+.+.....    
T Consensus       178 l~~i~~la~~--~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~  255 (398)
T cd00613         178 IKEIADIAHS--AGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTGVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTK  255 (398)
T ss_pred             HHHHHHHHHh--cCCEEEEEeccccccCCCChHHcCCCEEEeeccccCCCCCCCCCceeEEEEhhhhHhhCCCCeecccc
Confidence             999999999  9999999999876665555566789999999999982    23567999999988776533210    


Q ss_pred             -----CccccchH--HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCC
Q 015729          228 -----VRVFFDWK--DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK  300 (401)
Q Consensus       228 -----~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  300 (401)
                           ..+++.+.  ....+++.++....+.+...+..+..++..+.+.+++++.++.+++++++++.|++++.... ..
T Consensus       256 ~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~  334 (398)
T cd00613         256 DAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVLP-FN  334 (398)
T ss_pred             ccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-CC
Confidence                 01111111  11122344543334444444555555566666667888999999999999999999754432 11


Q ss_pred             CccCCceeEEEEcCC--CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHH
Q 015729          301 EEWFSDTVTAVIVPS--HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGV  366 (401)
Q Consensus       301 ~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i  366 (401)
                      .. .. ..+++.++.  +.+..++++.|.++ ||.+.... +..++.+|++++.++|++|+|+++++|
T Consensus       335 ~~-~~-~~v~~~~~~~~~~~~~~~~~~L~~~-gi~~~~~~-~~~~~~lRis~~~~~t~edid~~~~~L  398 (398)
T cd00613         335 GP-FF-HEFVLRLPPLYGIRAEDLAKALIDG-GFHAPTMY-LPVDGTLMIEPTETETKEELDALLEAL  398 (398)
T ss_pred             CC-ee-EEEEEEcCCcchHHHHHHHHhhhhc-Cccccccc-cCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence            11 22 234567753  34577899999876 88764322 223568999999999999999998864

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.97  E-value=4.1e-28  Score=215.27  Aligned_cols=324  Identities=13%  Similarity=0.086  Sum_probs=245.5

Q ss_pred             cCChHHHHHHHccCcCCC---CCccHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcCC
Q 015729           18 VHIPDQVIRAMNRNNEDY---RSPAVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIG   93 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~~~---~~~~~~~~~~~l~~~la~~~g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~   93 (401)
                      .+.+|++++|+.+...+.   +.+...+++..+.+..++.++.+ .++++++++|--.++..+++++.++||.|++..|.
T Consensus        37 f~~pp~i~~Al~~rvdhGvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~~gd~Vvi~tPv  116 (388)
T COG1168          37 FPTPPEIIEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTKPGDGVVIQTPV  116 (388)
T ss_pred             CCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhCcCCCeeEecCCC
Confidence            355677888888755432   23344568889999999998876 55779999999999999999999999999999998


Q ss_pred             cchHHHHHHHHHcCCcEEEEeCCC-CC--CCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcC
Q 015729           94 QFSLLWIDQQQRLNFNVDVVESDW-GE--GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR  167 (401)
Q Consensus        94 ~~~~~~~~~~~~~g~~~~~v~~~~-~~--~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~  167 (401)
                      |++.+  ......|-+++..|+-+ ++  .+|.++||+++.+   .+++++++|+||||+|.+-.   +.+|.++|++  
T Consensus       117 Y~PF~--~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~---~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~k--  189 (388)
T COG1168         117 YPPFY--NAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVD---ERVKLFILCNPHNPTGRVWTKEELRKIAELCLR--  189 (388)
T ss_pred             chHHH--HHHhhcCcEEEeccccccCCcEEecHHHHHHHHhc---CCccEEEEeCCCCCCCccccHHHHHHHHHHHHH--
Confidence            88765  56777898999988753 33  5699999999986   46799999999999999974   7778999999  


Q ss_pred             CCcEEEEecccccCcc------ee-ccCc--ccceEEEecCCCcccCCCcc--eEEEe-cHHHHHHhccCCCCccccchH
Q 015729          168 HPALFLVDGVSSICAI------DF-RMDE--WGIDVALTGSQKALSLPTGM--GIVCA-SPKALEASKTAKSVRVFFDWK  235 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~------~~-~~~~--~~~di~~~s~~K~l~g~~g~--G~l~~-~~~~~~~~~~~~~~~~~~~~~  235 (401)
                      ||++||+|+.|+-..+      ++ ....  ...-+.+.|.+|+|+ .+|+  +.++. ++++..+...           
T Consensus       190 h~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFN-laGL~~a~~Ii~n~~lr~~~~~-----------  257 (388)
T COG1168         190 HGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFN-LAGLKCAYIIISNRELRAKFLK-----------  257 (388)
T ss_pred             cCCEEEeecccccccccCCCccchhhcChhhhcceEEEeecccccc-chhhhheeEEecCHHHHHHHHH-----------
Confidence            9999999999974322      11 1111  234578888999996 5453  55554 4444233321           


Q ss_pred             HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEc
Q 015729          236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIV  313 (401)
Q Consensus       236 ~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~  313 (401)
                          ++....  ...++.+++.+..+|.+.-.. +++...++...|.+++.+.|++.  ++++..++    +.+++|+.+
T Consensus       258 ----~l~~~~--~~~~n~lg~~A~~aAY~~G~~-WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~----gTYL~WLD~  326 (388)
T COG1168         258 ----RLKRNG--LHGPSALGIIATEAAYNQGEP-WLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQ----GTYLAWLDC  326 (388)
T ss_pred             ----HHHHhc--CCCCchHHHHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHHhhCCCcEEecCC----Cceeeeeec
Confidence                111111  234888877777777764332 48899999999999999999984  88888764    446788877


Q ss_pred             C-CCCCHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          314 P-SHINSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       314 ~-~~~~~~~l~~~L~~~~~i~v~~g~~--~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      . -+++.+++.+.|.++.+|.+.+|..  ....+.+|+++.+  +++-+++++++|+..++.+
T Consensus       327 r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~ac--pr~~L~eal~ri~~al~~~  387 (388)
T COG1168         327 RELGLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFAC--PRAILEEALERLKRALKKR  387 (388)
T ss_pred             cccCCChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCC--CHHHHHHHHHHHHHHHhcc
Confidence            3 2567789999999988999999954  3334679999888  9999999999999888753

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=1.7e-28  Score=232.43  Aligned_cols=311  Identities=14%  Similarity=0.066  Sum_probs=227.9

Q ss_pred             CCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcc
Q 015729           16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF   95 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~   95 (401)
                      .|.++++.+++++......+..+.  ....++|+.+++++|.+++ ++++++|+++++..++.+++++||+|++++|.|.
T Consensus        62 ~p~~~~~~v~~a~~~~~~~~~Yp~--~~~~~lr~~ia~~~~~~~~-~I~~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~  138 (380)
T PLN03026         62 NPYGPPPEVLEALGNMKFPYVYPD--PESRRLRAALAEDSGLESE-NILVGCGADELIDLLMRCVLDPGDKIIDCPPTFG  138 (380)
T ss_pred             CCCCCCHHHHHHHHhhHhhccCCC--CCHHHHHHHHHHHhCcChh-hEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChH
Confidence            367788889998875321111122  2356899999999998764 4999999999999999888999999999999754


Q ss_pred             hHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEe
Q 015729           96 SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD  175 (401)
Q Consensus        96 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D  175 (401)
                      .+  ...++..|++++.++.+.++.+|++++++++..   ++++++++++|+||||.+.+.+++.++++.  . ++||+|
T Consensus       139 ~y--~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~---~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~--~-~~vi~D  210 (380)
T PLN03026        139 MY--VFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVET---HKPKLLFLTSPNNPDGSIISDDDLLKILEL--P-ILVVLD  210 (380)
T ss_pred             HH--HHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhc---cCCcEEEEeCCCCCCCCCCCHHHHHHHHhc--C-CEEEEE
Confidence            33  355677899999999877778899999998842   467999999999999999999999999986  5 999999


Q ss_pred             cccccCcce----eccCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCC
Q 015729          176 GVSSICAID----FRMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT  250 (401)
Q Consensus       176 ~a~~~~~~~----~~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  250 (401)
                      ++|......    .........+++.|.+|.++ .+.++|+++.++++++.+.....                    +++
T Consensus       211 eaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i~~l~~~~~--------------------~~~  270 (380)
T PLN03026        211 EAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQ--------------------PYN  270 (380)
T ss_pred             CcchhhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecCHHHHHHHHHhcC--------------------CCC
Confidence            998633211    11122345788999999984 33446999999988777654321                    122


Q ss_pred             CcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcC-CccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhh
Q 015729          251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG-LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQR  329 (401)
Q Consensus       251 ~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  329 (401)
                      .+.....++.++++.  ...+++.++++.+.++++.+.|++++ +.+..     ....++++.++.+.+..++.+.|.++
T Consensus       271 ~~~~~q~aa~~aL~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p-----~~~~f~~~~~~~~~~~~~~~~~l~~~  343 (380)
T PLN03026        271 VSVAAEVAACAALSN--PKYLEDVKNALVEERERLFGLLKEVPFLEPYP-----SDANFILCRVTSGRDAKKLKEDLAKM  343 (380)
T ss_pred             CCHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCCeECC-----CCCeEEEEECCCCCCHHHHHHHHHHC
Confidence            444444444445432  12256677888888999999998874 33322     12357778886566788999999855


Q ss_pred             CCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          330 YNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       330 ~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                       ||.++++.....++++||++.   +.++.+++++++++
T Consensus       344 -gI~v~~~~~~~~~~~lRis~~---~~~~~~~l~~al~~  378 (380)
T PLN03026        344 -GVMVRHYNSKELKGYIRVSVG---KPEHTDALMEALKQ  378 (380)
T ss_pred             -CeEEEECCCCCCCCEEEEecC---CHHHHHHHHHHHHH
Confidence             999988754434568999754   67888999888865

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.97  E-value=5.3e-29  Score=237.43  Aligned_cols=320  Identities=13%  Similarity=0.092  Sum_probs=227.7

Q ss_pred             ChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcCC
Q 015729           20 IPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIG   93 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~   93 (401)
                      +++.+.+++.+.... ...+.......++++.+++++    |.. .++++++++|+++|+..++.+++++||+|++++++
T Consensus        47 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~  126 (391)
T PRK08361         47 TPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPA  126 (391)
T ss_pred             CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCC
Confidence            456777777663221 112322344567888888876    432 33459999999999999998999999999999998


Q ss_pred             cchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCC
Q 015729           94 QFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRH  168 (401)
Q Consensus        94 ~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~  168 (401)
                      |++..  ..++..|++++.++++.+  +.+|++++++.+++    +++++++++|+||||.++|   +++|.++|++  +
T Consensus       127 y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~----~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~--~  198 (391)
T PRK08361        127 FVCYV--EDAKIAEAKPIRIPLREENEFQPDPDELLELITK----RTRMIVINYPNNPTGATLDKEVAKAIADIAED--Y  198 (391)
T ss_pred             CcccH--HHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc----ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHH--c
Confidence            77653  567778999999998764  36899999998874    5689999999999999999   7788888999  9


Q ss_pred             CcEEEEecccccCcce----eccC--cccceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHH
Q 015729          169 PALFLVDGVSSICAID----FRMD--EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKF  240 (401)
Q Consensus       169 ~~~li~D~a~~~~~~~----~~~~--~~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
                      ++++|+|++++.....    ....  ....++++.|.+|.++ .+|  +|++++++++.+.+....             .
T Consensus       199 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~GlRiG~~~~~~~~~~~~~~~~-------------~  264 (391)
T PRK08361        199 NIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFA-MTGWRLGFVIAPEQVIKDMIKLH-------------A  264 (391)
T ss_pred             CeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcC-CcHhhhhhhccCHHHHHHHHHHH-------------h
Confidence            9999999998643211    0111  1235788999999884 556  799999988877654211             0


Q ss_pred             hhcCCCCCCCCcHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCC-CC
Q 015729          241 YNLGTFWPYTPSIQLLYGLRAALDLIFE-EGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS-HI  317 (401)
Q Consensus       241 ~~~g~~~~~~~~~~~~~a~~~al~~~~~-~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~  317 (401)
                      +.     .++.+.....++..+++.-.. ..+++.+++++++.+.+.+.|+++ |+.+..+    ..+.++|+.++. +.
T Consensus       265 ~~-----~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p----~g~~~~~~~l~~~~~  335 (391)
T PRK08361        265 YI-----IGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEP----KGAFYVFANIDETGM  335 (391)
T ss_pred             hh-----ccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCC----CEEEEEEEECCCCCC
Confidence            00     112333322233333321000 125677888888899999999887 7665544    234578888864 56


Q ss_pred             CHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          318 NSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       318 ~~~~l~~~L~~~~~i~v~~g~~--~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      +..++.+.|.+++||.+.+|..  ...++++||++..  +++++++++++|++.+++
T Consensus       336 ~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~--~~~~l~~al~~l~~~l~~  390 (391)
T PRK08361        336 SSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYAT--SKEKLIEAMERMEKALEE  390 (391)
T ss_pred             CHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecC--CHHHHHHHHHHHHHHHhc
Confidence            7889999887667999999853  2235789998764  788999999999998864

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.97  E-value=1.6e-28  Score=232.45  Aligned_cols=320  Identities=15%  Similarity=0.118  Sum_probs=229.8

Q ss_pred             ccccCC--CcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEE
Q 015729           11 HLFVPG--PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRII   88 (401)
Q Consensus        11 ~~~~~~--p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl   88 (401)
                      +.|+.+  |...++.+++++.+.......+.. ....++++.++++++.++ +++++++|+++++..++.+++++||+|+
T Consensus        35 i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~-~~~~~lr~~ia~~~~~~~-~~i~~t~G~~~~l~~~~~~l~~~gd~vl  112 (367)
T PRK02731         35 IKLASNENPLGPSPKAIEAIRAAADELHRYPD-GSGFELKAALAEKFGVDP-ERIILGNGSDEILELLARAYLGPGDEVI  112 (367)
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHhhcCCCC-CcHHHHHHHHHHHhCcCH-HHEEEcCCHHHHHHHHHHHhcCCCCEEE
Confidence            444443  444567777777764322111111 123689999999999865 4499999999999988888889999999


Q ss_pred             EEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCC
Q 015729           89 SFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRH  168 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~  168 (401)
                      ++++.|..+.  ..++..|++++.++.+ ++.+|++.+++.+++    +++++++++++||||.+++.+++.++++.+.+
T Consensus       113 ~~~p~y~~~~--~~~~~~g~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~  185 (367)
T PRK02731        113 YSEHGFAVYP--IAAQAVGAKPVEVPAK-DYGHDLDAMLAAVTP----RTRLVFIANPNNPTGTYLPAEEVERFLAGVPP  185 (367)
T ss_pred             EecCCHHHHH--HHHHHcCCeEEEeccc-CCCCCHHHHHHHhCC----CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCC
Confidence            9999765433  4467789999999874 456899999998863    56999999999999999999999999988435


Q ss_pred             CcEEEEecccccCcce------eccC-cccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHH
Q 015729          169 PALFLVDGVSSICAID------FRMD-EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF  240 (401)
Q Consensus       169 ~~~li~D~a~~~~~~~------~~~~-~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
                      |+++|+|++|......      .+.. .....+++.|.+|.++ ++.++|++++++++.+.+.....             
T Consensus       186 ~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~~~~-------------  252 (367)
T PRK02731        186 DVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVRQ-------------  252 (367)
T ss_pred             CcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCHHHHHHHHHccC-------------
Confidence            9999999998643210      1111 1134577889999874 23456999999988777654311             


Q ss_pred             hhcCCCCCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCH
Q 015729          241 YNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINS  319 (401)
Q Consensus       241 ~~~g~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (401)
                             +++.+..   ++.++.+.+... .+++.+++++++.+.+.+.|++.|+.+..+     .+.++++.++++.++
T Consensus       253 -------~~~~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-----~g~~~~i~~~~~~~~  317 (367)
T PRK02731        253 -------PFNVNSL---ALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAELGLEYIPS-----VGNFILVDFDDGKDA  317 (367)
T ss_pred             -------CCCCCHH---HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCCccCCC-----CceEEEEECCCCCCH
Confidence                   1112333   333344443322 256778888888899999998887765431     245788888766788


Q ss_pred             HHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          320 SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       320 ~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      .++++.|.++ ||.++++......+++|+++.   +.+|+++++++|+++++
T Consensus       318 ~~~~~~L~~~-gI~v~~~~~~~~~~~iRis~~---~~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        318 AEAYQALLKR-GVIVRPVAGYGLPNALRITIG---TEEENRRFLAALKEFLA  365 (367)
T ss_pred             HHHHHHHHHC-CEEEEeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHh
Confidence            8999999865 999998854323568999864   68899999999998764

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=6.7e-29  Score=233.86  Aligned_cols=313  Identities=13%  Similarity=0.107  Sum_probs=225.6

Q ss_pred             CcCChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcc
Q 015729           17 PVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF   95 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~   95 (401)
                      |.+.++.+.+++.+.... ...+. .....++|+.++++++.+++ ++++|+|+++++..++.+++++||+|++++|+|+
T Consensus        35 ~~~~~~~~~~a~~~~~~~~~~~y~-~~~~~~lr~aia~~~~~~~~-~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~  112 (353)
T PRK05387         35 PYPPSPKVLEAIRAALGDDLRLYP-DPNADALRQAIAAYYGLDPE-QVFVGNGSDEVLAHAFLAFFNHDRPLLFPDITYS  112 (353)
T ss_pred             CCCCCHHHHHHHHHHhhhhhhcCC-CCcHHHHHHHHHHHhCCCHH-HEEEcCCHHHHHHHHHHHhcCCCCEEEEeCCCHH
Confidence            445577888888764332 11222 12347999999999998664 4999999999999999999999999999999764


Q ss_pred             hHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEe
Q 015729           96 SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD  175 (401)
Q Consensus        96 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D  175 (401)
                      .+  ...++..|++++.++.+.++.+|++++++        ..+++++++|+||||.+++.+++.++++.+ +++++|+|
T Consensus       113 ~~--~~~~~~~g~~~~~v~~~~~~~~d~~~l~~--------~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~-~~~~livD  181 (353)
T PRK05387        113 FY--PVYAGLYGIPYEEIPLDDDFSIDVEDYLR--------PNGGIIFPNPNAPTGIALPLAEIERILAAN-PDSVVVID  181 (353)
T ss_pred             HH--HHHHHHcCCEEEEeecCCCCCCCHHHHHh--------cCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCcEEEEe
Confidence            43  35577889999999998778899998863        136889999999999999999999999883 29999999


Q ss_pred             cccccCcc-e-ec-cCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCC
Q 015729          176 GVSSICAI-D-FR-MDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP  251 (401)
Q Consensus       176 ~a~~~~~~-~-~~-~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  251 (401)
                      ++|..... . .. .+....++++.|.+|.++ .+.++|+++.++++.+.+.....                 .+..++.
T Consensus       182 e~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~~l~~~~~-----------------~~~~~~~  244 (353)
T PRK05387        182 EAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKN-----------------SFNSYPL  244 (353)
T ss_pred             CcccccCCcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecCHHHHHHHHHhhc-----------------cCCCCCc
Confidence            99853211 0 01 112245789999999884 23357999999988777654311                 0001234


Q ss_pred             cHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCC
Q 015729          252 SIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYN  331 (401)
Q Consensus       252 ~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  331 (401)
                      +.....++.++++.  .+.+++.++++.++++.+.+.|++.|+++...     ...++++.++ +.+..++++.|.++ |
T Consensus       245 ~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-----~~~~~~~~~~-~~~~~~~~~~l~~~-g  315 (353)
T PRK05387        245 DRLAQAGAIAAIED--EAYFEETRAKVIATRERLVEELEALGFEVLPS-----KANFVFARHP-SHDAAELAAKLRER-G  315 (353)
T ss_pred             CHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCeECCC-----cCcEEEEECC-CCCHHHHHHHHHHC-C
Confidence            44444444444431  22356778888889999999998888765321     2346778775 45788999999765 9


Q ss_pred             eEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          332 LSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       332 i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      |.++....+...+++||++.   +++++++++++|+++++
T Consensus       316 i~v~~~~~~~~~~~iRis~~---~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        316 IIVRHFNKPRIDQFLRITIG---TDEEMEALVDALKEILA  352 (353)
T ss_pred             EEEEECCCCCCCCeEEEEeC---CHHHHHHHHHHHHHHhh
Confidence            99875433323568999864   67999999999998764

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.97  E-value=9.9e-29  Score=238.34  Aligned_cols=315  Identities=15%  Similarity=0.074  Sum_probs=225.2

Q ss_pred             HHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcC--CCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHH
Q 015729           22 DQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKT--TSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLW   99 (401)
Q Consensus        22 ~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~   99 (401)
                      +.+.+++.+.......+.......++++.++++++.  ..++++++++|+++|+..++.++++|||.|++++|+|+.+. 
T Consensus       101 p~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~-  179 (431)
T PRK15481        101 PDLSRYFARLSRTPRLYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSI-  179 (431)
T ss_pred             HHHHHHHHHhhhhhhhcCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHH-
Confidence            456666665332222233334456789999998874  23446999999999999999999999999999999876653 


Q ss_pred             HHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEE-ecCCCcccccchH---HHHHHhhhcCC-CcEEEE
Q 015729          100 IDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIV-HNETATGVTNNLS---KVRKLLDEYRH-PALFLV  174 (401)
Q Consensus       100 ~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~-~~~n~tG~~~~l~---~i~~l~~~~~~-~~~li~  174 (401)
                       ..++..|++++.++++.++ +|++++++++++    ++++++++ +|+||||.+++.+   +|.++|++  + +++||+
T Consensus       180 -~~~~~~g~~~~~v~~~~~g-~~~~~l~~~~~~----~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~--~~~~~ii~  251 (431)
T PRK15481        180 -NMLRYAGFSASPVSVDAEG-MQPEKLERALAQ----GARAVILTPRAHNPTGCSLSARRAAALRNLLAR--YPQVLVII  251 (431)
T ss_pred             -HHHHHcCCeEEeeccCCCC-CCHHHHHHHHhc----CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHh--cCCceEEe
Confidence             6678899999999987654 899999999874    46888887 9999999999875   88999998  7 999999


Q ss_pred             ecccccCcce--ec-c-CcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCC
Q 015729          175 DGVSSICAID--FR-M-DEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT  250 (401)
Q Consensus       175 D~a~~~~~~~--~~-~-~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  250 (401)
                      |++|......  .. . ......+++.|.+|.++.+.++|+++.++++.+.+.....               ..   ...
T Consensus       252 De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~GlRiG~~i~~~~~~~~~~~~~~---------------~~---~~~  313 (431)
T PRK15481        252 DDHFALLSSSPYHSVIPQTTQRWALIRSVSKALGPDLRLAFVASDSATSARLRLRLN---------------SG---TQW  313 (431)
T ss_pred             cCchhhhccCCCCCCCcCCCCCEEEEeeeccccCCCceeEEEeCCHHHHHHHHHHHh---------------cc---ccC
Confidence            9998643210  01 1 1123468899999999744567999999988776642110               01   112


Q ss_pred             CcHHHHHHHHHHHHHHH-HhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhh
Q 015729          251 PSIQLLYGLRAALDLIF-EEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQR  329 (401)
Q Consensus       251 ~~~~~~~a~~~al~~~~-~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  329 (401)
                      .+.....++..+++.-. ...+++.++.++++++.+.+.|++.|+.+..+    ..+.++|+.+|+  +..++.+.|.++
T Consensus       314 ~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~~~~~~~p----~gg~f~~~~l~~--~~~~~~~~l~~~  387 (431)
T PRK15481        314 VSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQYGIAIPSP----GDGLNLWLPLDT--DSQATALTLAKS  387 (431)
T ss_pred             CCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC----CCeEEEEEECCC--CHHHHHHHHHHC
Confidence            33433333333433100 11145678888899999999998887765333    345788888864  467888888765


Q ss_pred             CCeEEccCCCCC---CCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          330 YNLSLGLGLNKV---AGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       330 ~~i~v~~g~~~~---~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                       ||.+.+|....   .++++||++.. .+++++++++++|+++++
T Consensus       388 -gV~v~pg~~f~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~~~  430 (431)
T PRK15481        388 -GWLVREGEAFGVSAPSHGLRITLST-LNDAEINRLAADLHQALN  430 (431)
T ss_pred             -CcEEecCCccccCCCCCeEEEEcCC-CChHHHHHHHHHHHHHhc
Confidence             99999985421   23579997654 779999999999998874

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.97  E-value=1.9e-28  Score=233.76  Aligned_cols=315  Identities=14%  Similarity=0.074  Sum_probs=218.0

Q ss_pred             hHHHHHHHccCcC--CCCCccHHHHHHHHHHHHHHHh----cCC--CCceEEecCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           21 PDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIF----KTT--SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        21 ~~~v~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~----g~~--~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      ++.+++++.+...  ....+.......++|+.+++++    |.+  +++.+++|+|+++|+..++.+++++||+|++++|
T Consensus        50 p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P  129 (394)
T PRK05942         50 PQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSP  129 (394)
T ss_pred             CHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcCC
Confidence            4445555443221  1122333344567888888877    432  3334888999999999999899999999999999


Q ss_pred             CcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcC
Q 015729           93 GQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR  167 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~  167 (401)
                      +|+.+.  ..+...|++++.++.+.+  +.+|++++++.++    ++++++++++|+||||.+++   +++|.++|++  
T Consensus       130 ~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~----~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~--  201 (394)
T PRK05942        130 AYPAHF--RGPLIAGAQIYPIILKPENDWLIDLSSIPEEVA----QQAKILYFNYPSNPTTATAPREFFEEIVAFARK--  201 (394)
T ss_pred             CCcchH--HHHHHcCCEEEEeecCCccCCccCHHHHHHhcc----ccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHH--
Confidence            877654  345678999999998743  4689999999886    36799999999999999998   6678888998  


Q ss_pred             CCcEEEEecccccCcc------e-eccCc-ccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHH
Q 015729          168 HPALFLVDGVSSICAI------D-FRMDE-WGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYI  238 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~------~-~~~~~-~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (401)
                      +|++||+|++|.....      + .+... ....+++.|.+|.++ .+.++|+++.++++.+.+.....           
T Consensus       202 ~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~~l~~~l~~~~~-----------  270 (394)
T PRK05942        202 YEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRHIIQGLRTLKT-----------  270 (394)
T ss_pred             cCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecCHHHHHHHHHHHh-----------
Confidence            9999999999864321      0 11111 234577889999883 23347999999998877754211           


Q ss_pred             HHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCC
Q 015729          239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN  318 (401)
Q Consensus       239 ~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  318 (401)
                           .  ...+.+.....++..+++.. +..+++.++++.++.+.+.+.|++.|+.+..+    ..+.++|+.+|.+.+
T Consensus       271 -----~--~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~----~~~~f~~~~~~~~~~  338 (394)
T PRK05942        271 -----N--LDYGIFSALQKAAETALQLP-DSYLQQVQERYRTRRDFLIQGLGELGWNIPPT----KATMYLWVPCPVGMG  338 (394)
T ss_pred             -----h--cccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHCCCeecCC----CeeeEEEEECCCCCC
Confidence                 0  01123333334445555432 22356778888888999999998877765543    345688899877677


Q ss_pred             HHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          319 SSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      ..++...+.+++||.+.+|...  ...+++||++..  +.+.+.+++++|.+
T Consensus       339 ~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~  388 (394)
T PRK05942        339 STDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIA--DCDRLGEALDRLKQ  388 (394)
T ss_pred             HHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence            7788877766679999988432  235789998753  45566666666543

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.97  E-value=2.1e-28  Score=233.86  Aligned_cols=320  Identities=17%  Similarity=0.132  Sum_probs=227.5

Q ss_pred             ChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcCC
Q 015729           20 IPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIG   93 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~   93 (401)
                      .++.+.+++.+.... ...+.......++|+.+++++    |.. .++++++++|+++|+..++.+++++||+|++++++
T Consensus        45 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~  124 (393)
T PRK05764         45 TPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPY  124 (393)
T ss_pred             CCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCC
Confidence            356676766653321 112322334567888888877    321 23459999999999999998889999999999998


Q ss_pred             cchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCC
Q 015729           94 QFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRH  168 (401)
Q Consensus        94 ~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~  168 (401)
                      |+.+  ...++..|++++.++.+.+  +.+|++++++++++    +++++++++|+||||.+++   +++|.++|++  +
T Consensus       125 y~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~----~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~--~  196 (393)
T PRK05764        125 WVSY--PEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITP----KTKALILNSPSNPTGAVYSPEELEAIADVAVE--H  196 (393)
T ss_pred             Ccch--HHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCc----cceEEEEECCCCCCCcccCHHHHHHHHHHHHH--C
Confidence            7754  3567788999999998743  46789999998863    5689999999999999986   6678888999  9


Q ss_pred             CcEEEEecccccCcce------e-c--cCcccceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHH
Q 015729          169 PALFLVDGVSSICAID------F-R--MDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDY  237 (401)
Q Consensus       169 ~~~li~D~a~~~~~~~------~-~--~~~~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  237 (401)
                      |+++|+|++|+.....      . .  .+..+.++++.|.+|.++ .+|  +|+++.++++.+.+.....          
T Consensus       197 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~RiG~i~~~~~~~~~~~~~~~----------  265 (393)
T PRK05764        197 DIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYA-MTGWRLGYAAGPKELIKAMSKLQS----------  265 (393)
T ss_pred             CcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCccccc-CccceeEEEecCHHHHHHHHHHHh----------
Confidence            9999999998643210      0 1  122356889999999984 444  7999999988776653210          


Q ss_pred             HHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCC
Q 015729          238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSH  316 (401)
Q Consensus       238 ~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~  316 (401)
                              .+...++.....++..+++. ....+++.++++.++.+.+.+.|++. |+++..+    ..+.++++.++..
T Consensus       266 --------~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~----~g~~~~~~~~~~~  332 (393)
T PRK05764        266 --------HSTSNPTSIAQYAAVAALNG-PQDEVEEMRQAFEERRDLMVDGLNEIPGLECPKP----EGAFYVFPNVSKL  332 (393)
T ss_pred             --------hcccCCChHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCC----CcceEEEEecccc
Confidence                    01112344333344444431 12235667788888899999999987 8776553    2445677777643


Q ss_pred             C-----CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          317 I-----NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       317 ~-----~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .     ++.++...|.+++||.+.+|.....++++||++..  +++++++++++|++++++.
T Consensus       333 ~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~~~--~~~~~~~~i~~l~~~~~~~  392 (393)
T PRK05764        333 LGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYAT--SLEDLEEGLERIERFLESL  392 (393)
T ss_pred             cccccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEecC--CHHHHHHHHHHHHHHHHhh
Confidence            3     24788888876679999998554446899998764  7999999999999988753

>PRK08912 hypothetical protein; Provisional

Probab=99.97  E-value=2.2e-28  Score=233.00  Aligned_cols=319  Identities=16%  Similarity=0.128  Sum_probs=224.2

Q ss_pred             ChHHHHHHHccCcC-CCCCccHHHHHHHHHHHHHHHh----cCC-CCc-eEEecCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           20 IPDQVIRAMNRNNE-DYRSPAVPALTKTLLEDIKKIF----KTT-SGT-PFLIPTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        20 ~~~~v~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~~----g~~-~~~-~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      .++.+++++.+... ....+.......++|+.+++++    |.+ .++ ++++|+|+++|+..++.+++++||+|+++.|
T Consensus        40 ~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p  119 (387)
T PRK08912         40 GPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQP  119 (387)
T ss_pred             CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCC
Confidence            35566666655321 1122332334456777777665    432 233 6999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHcCCcEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCC
Q 015729           93 GQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRH  168 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~  168 (401)
                      .|+.+.  ..++..|++++.++++. ++.+|++++++.+..    +++++++++|+||||.+++   +++|.++|++  +
T Consensus       120 ~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~--~  191 (387)
T PRK08912        120 LYDAYL--PLIRRAGGVPRLVRLEPPHWRLPRAALAAAFSP----RTKAVLLNNPLNPAGKVFPREELALLAEFCQR--H  191 (387)
T ss_pred             CchhhH--HHHHHcCCEEEEEecCcccCcCCHHHHHHHhCc----cceEEEEeCCCCCcCcccCHHHHHHHHHHHHH--C
Confidence            876543  56788899999999864 467899999998863    5689999999999999997   5568888898  9


Q ss_pred             CcEEEEecccccCcc------e-eccCc-ccceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHH
Q 015729          169 PALFLVDGVSSICAI------D-FRMDE-WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYI  238 (401)
Q Consensus       169 ~~~li~D~a~~~~~~------~-~~~~~-~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (401)
                      +++||+|++|.....      + ..... .+.++++.|.+|.++ .+|  +|+++++++..+.+.....           
T Consensus       192 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~GlRiG~~~~~~~~~~~l~~~~~-----------  259 (387)
T PRK08912        192 DAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFS-LTGWKVGFVCAAPPLLRVLAKAHQ-----------  259 (387)
T ss_pred             CeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhcc-CcCceeEEEecCHHHHHHHHHHHh-----------
Confidence            999999999853221      1 11111 246799999999884 444  7999999998776643210           


Q ss_pred             HHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC---
Q 015729          239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS---  315 (401)
Q Consensus       239 ~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~---  315 (401)
                             ...++.+.....++..++... ...+++.++++.++++.+.+.|++.|+++..+    ..+.++|+.+|.   
T Consensus       260 -------~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~g~~~l~~~l~~~~~  327 (387)
T PRK08912        260 -------FLTFTTPPNLQAAVAYGLGKP-DDYFEGMRADLARSRDRLAAGLRRIGFPVLPS----QGTYFLTVDLAPLGL  327 (387)
T ss_pred             -------hccccCChHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC----CcceEEEecccccCC
Confidence                   001112222223333333211 12256678888999999999999888776543    245678888864   


Q ss_pred             CCCHHHHHHHHHhhCCeEEccCCCC----CCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          316 HINSSEIVRRAWQRYNLSLGLGLNK----VAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       316 ~~~~~~l~~~L~~~~~i~v~~g~~~----~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      ..+..++++.|.++.||.+.+|...    ...+++|+++..  +++++++++++|++.+++
T Consensus       328 ~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~--~~~~l~~~l~rl~~~l~~  386 (387)
T PRK08912        328 AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK--RDATLDEAVERLAAARRR  386 (387)
T ss_pred             CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeC--CHHHHHHHHHHHHHHHhc
Confidence            2467789999876669999998432    124789998775  689999999999988753

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=1.7e-28  Score=231.22  Aligned_cols=311  Identities=14%  Similarity=0.152  Sum_probs=229.2

Q ss_pred             CCcCChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCC
Q 015729           16 GPVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIG   93 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~   93 (401)
                      .|.++++.+++++.+....  ...+.. ....++++.++++++.+.++++++++|+++++..++.+++++||+|++++|+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~~~gd~vlv~~P~  114 (356)
T PRK04870         36 NPYRLPAELRAELGERLAEVALNRYPD-PRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALACAKPGATVLAPEPG  114 (356)
T ss_pred             CCCCCCHHHHHHHHHHhhccccccCCC-CCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            3567889999998875422  222222 2457999999999998754459999999999999988889999999999997


Q ss_pred             cchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEE
Q 015729           94 QFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFL  173 (401)
Q Consensus        94 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li  173 (401)
                      |+.+  ...++..|++++.+++++++.+|++++++.+.+   ++++++++++|+||||.+++.+++.++++.  .++++|
T Consensus       115 y~~~--~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~---~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~--~~~~ii  187 (356)
T PRK04870        115 FVMY--RMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAE---HRPALVFLAYPNNPTGNLFDDADVERIIEA--APGLVV  187 (356)
T ss_pred             HHHH--HHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhc---CCCCEEEEcCCCCCCCCCCCHHHHHHHHHH--CCCEEE
Confidence            6654  466888999999999987778999999999864   357999999999999999999999999988  588999


Q ss_pred             EecccccCcc-e--eccCcccceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCC
Q 015729          174 VDGVSSICAI-D--FRMDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP  248 (401)
Q Consensus       174 ~D~a~~~~~~-~--~~~~~~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  248 (401)
                      +|+++..... .  .........+++.|.+| + +.+|  +|+++++++.++++.....                    .
T Consensus       188 ~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~-~~~GlRiG~~i~~~~~i~~~~~~~~--------------------~  245 (356)
T PRK04870        188 VDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-L-GLAGLRLGYLAGHPAWIAELDKVRP--------------------P  245 (356)
T ss_pred             EECCchhhcCcchHHHHhhCCCEEEEecchh-h-hhHHHhhhhhhCCHHHHHHHHHccC--------------------C
Confidence            9999863321 0  01122234688999999 5 3444  7999999988877654321                    1


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHH
Q 015729          249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAW  327 (401)
Q Consensus       249 ~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  327 (401)
                      ++.+....+++..+++..  ..+++.+++++++++.+.+.|+++ |+.+...     .+.++++.++   +..++.+.|.
T Consensus       246 ~~~~~~~q~~a~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~l~  315 (356)
T PRK04870        246 YNVNVLTQATALFALEHV--DVLDAQAAQLRAERTRLAAALAALPGVTVFPS-----AANFILVRVP---DAAAVFDGLK  315 (356)
T ss_pred             CcCCHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHHHhCCCcEECCC-----CCeEEEEECC---CHHHHHHHHH
Confidence            123333333334444321  125677888889999999999887 7654321     2347888885   4678888886


Q ss_pred             hhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          328 QRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       328 ~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      ++ ||.++++...  ..++++||++.   +.++.++++++|++++
T Consensus       316 ~~-gI~v~~~~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~~  356 (356)
T PRK04870        316 TR-GVLVKNLSGMHPLLANCLRVTVG---TPEENAQFLAALKAAL  356 (356)
T ss_pred             HC-CEEEEECCCCCCCCCCeEEEeCC---CHHHHHHHHHHHHHhC
Confidence            55 9999987432  23578999765   6889999999998753

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.97  E-value=2e-28  Score=229.92  Aligned_cols=314  Identities=16%  Similarity=0.050  Sum_probs=221.2

Q ss_pred             CChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHh----cCC--CCceEEecCChhHHHHHHHhccCCCC---CeEEE
Q 015729           19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF----KTT--SGTPFLIPTTGTGAWESALTNTLSPG---DRIIS   89 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~--~~~~i~~~~g~t~a~~~~~~~~~~~g---d~vl~   89 (401)
                      +.++.+.+++.+.......|.......++|+.+++++    |.+  +++++++|+|+++|+..++.+++++|   |+|++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~   92 (350)
T TIGR03537        13 PTPPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIF   92 (350)
T ss_pred             CCCHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEE
Confidence            3366777887764322222322233457777777765    543  33269999999999999988888887   69999


Q ss_pred             EcCCcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhh
Q 015729           90 FLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLD  164 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~  164 (401)
                      +.|+|+.+.  ..++..|++++.++.+.  ++.+|++++++++.+    +++++++++|+||||.+++   +++|.++|+
T Consensus        93 ~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~----~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~  166 (350)
T TIGR03537        93 GTPGYPVYE--RGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILE----ETKIVWINYPHNPTGATAPRSYLKETIAMCR  166 (350)
T ss_pred             cCCCCcchH--HHHHhcCCEEEEcccCcccCCccCHHHHHHhhhh----ccEEEEEeCCCCCcCcccCHHHHHHHHHHHH
Confidence            999877654  55788999999999864  345799999998874    5699999999999999998   777888898


Q ss_pred             hcCCCcEEEEecccccCcc---eeccC--cccceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHH
Q 015729          165 EYRHPALFLVDGVSSICAI---DFRMD--EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDY  237 (401)
Q Consensus       165 ~~~~~~~li~D~a~~~~~~---~~~~~--~~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  237 (401)
                      +  +|++||+|+++.....   +....  .....+++.|.+|.++ .+|  +|+++.++++.+.+.....          
T Consensus       167 ~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g-~~GlRiG~~~~~~~~~~~~~~~~~----------  233 (350)
T TIGR03537       167 E--HGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSG-MTGYRSGFVAGDEKLISFLRKLRA----------  233 (350)
T ss_pred             H--cCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccC-CccccceeeecCHHHHHHHHHHHH----------
Confidence            8  9999999999864321   11111  1234588889999883 444  7999988887766653210          


Q ss_pred             HHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCC
Q 015729          238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI  317 (401)
Q Consensus       238 ~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~  317 (401)
                        .+      ..+++.....++.+++.  .....++.+++++++.+.+.+.|.+.|+++..+    ..+.++++++|+..
T Consensus       234 --~~------~~~~~~~~q~~~~~~l~--~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~----~g~~~~~~~~~~~~  299 (350)
T TIGR03537       234 --NF------GVASPDFVQAAAKAAWS--DDNHVLERRKIFKRKRDLFIEFFNKVGLEYLYP----DATFYLWVKVPSGI  299 (350)
T ss_pred             --hh------ccCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC----CeEEEEEEECCCCC
Confidence              00      11233222233333332  122356677888888888999998888765543    24557888888767


Q ss_pred             CHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          318 NSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       318 ~~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      ++.++++.|.++ ||.+.+|...  ...+++|+++.  .++++++++++++++
T Consensus       300 ~~~~l~~~L~~~-gv~v~~g~~f~~~~~~~~Ri~~~--~~~~~~~~~l~~~~~  349 (350)
T TIGR03537       300 DAKDYALRLLEN-GIVVAPGENFGSGEEGYVRVALV--PTLEECEEALRLWER  349 (350)
T ss_pred             CHHHHHHHHHHC-CEEEcCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHhc
Confidence            788999999875 9999998532  22578999875  478999999988864

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.97  E-value=4.5e-28  Score=232.21  Aligned_cols=333  Identities=17%  Similarity=0.137  Sum_probs=234.4

Q ss_pred             CCcccccCCCcCChHHHHHHHccCcCCC--------C---CccHHHHHHH-HHHHHHHHhcCCCCceEEecCChhHHHHH
Q 015729            8 GKNHLFVPGPVHIPDQVIRAMNRNNEDY--------R---SPAVPALTKT-LLEDIKKIFKTTSGTPFLIPTTGTGAWES   75 (401)
Q Consensus         8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~--------~---~~~~~~~~~~-l~~~la~~~g~~~~~~i~~~~g~t~a~~~   75 (401)
                      .++.++.|+|..+++.|++++.......        +   +....+.+++ .++.+++++|.+..  .++++||++|+..
T Consensus        19 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~--~v~~~sgt~a~~~   96 (402)
T cd00378          19 RETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYA--NVQPHSGSQANLA   96 (402)
T ss_pred             HhCeeeeccCCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCce--eeecCCcHHHHHH
Confidence            4688999999999999999998753211        1   1112233333 56678899998753  2344467899999


Q ss_pred             HHhccCCCCCeEEEEcCCcchHHHH---HHHHHcCCcEEEEeCCC---CCCCChHHHHHHHhccCCCCceEEEEEecCCC
Q 015729           76 ALTNTLSPGDRIISFLIGQFSLLWI---DQQQRLNFNVDVVESDW---GEGAKLDVLASKLAADTAHTIKAICIVHNETA  149 (401)
Q Consensus        76 ~~~~~~~~gd~vl~~~~~~~~~~~~---~~~~~~g~~~~~v~~~~---~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~  149 (401)
                      ++.+++++||+|+++.+.|.++...   ..++..|++++.++.+.   ++.+|++++++.+..   +++++++++++++ 
T Consensus        97 ~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~---~~~~~v~~~~~~~-  172 (402)
T cd00378          97 VYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALE---FKPKLIVAGASAY-  172 (402)
T ss_pred             HHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHh---CCCCEEEecCccc-
Confidence            9999999999999999987665321   12455687777776643   468999999999864   3578888887765 


Q ss_pred             cccccchHHHHHHhhhcCCCcEEEEecccccCcc-----eeccCcccceEEEecCCCcccCCCcceEEEecH-HHHHHhc
Q 015729          150 TGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASP-KALEASK  223 (401)
Q Consensus       150 tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~-~~~~~~~  223 (401)
                       |...|+++|.++|++  +|+++|+|++|..+..     +....  ++|++++|+||++.|+.| |+++.++ ++.+++.
T Consensus       173 -~~~~~~~~I~~l~~~--~~~~li~D~a~~~g~~~~g~~~~~~~--~~dv~~~s~sK~l~G~~g-g~i~~~~~~~~~~l~  246 (402)
T cd00378         173 -PRPIDFKRFREIADE--VGAYLLVDMAHVAGLVAGGVFPNPLP--GADVVTTTTHKTLRGPRG-GLILTRKGELAKKIN  246 (402)
T ss_pred             -CCCcCHHHHHHHHHh--cCCEEEEEccchhhhhhcccCCCccc--CCcEEEeccccCCCCCCc-eEEEeccHHHHHHHH
Confidence             467799999999999  9999999999865432     22222  579999999999966665 7776665 7766664


Q ss_pred             cCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcc
Q 015729          224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEW  303 (401)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  303 (401)
                      .....                 +..+++....++++..++......++++.++++.++++++++.|.+.|+.+....   
T Consensus       247 ~~~~~-----------------~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---  306 (402)
T cd00378         247 SAVFP-----------------GLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERGFKVVSGG---  306 (402)
T ss_pred             HHhCc-----------------cccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEeecC---
Confidence            32110                 1122344445555566666554434577888899999999999999888775321   


Q ss_pred             CCceeEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCCC------CCcEEEEeeccc----CCHHHHHHHHHHHHHHHHh
Q 015729          304 FSDTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNKV------AGKVFRIGHLGH----LNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       304 ~~~~~~~~~~~~-~~~~~~l~~~L~~~~~i~v~~g~~~~------~~~~~Ri~~~~~----~~~~di~~~~~~i~~~l~~  372 (401)
                      ....++++.+++ +.+...+.+.|. +.||.+.+...+.      ....+|+++...    ++++|++++++.|++++++
T Consensus       307 ~~~~~v~v~~~~~~~~~~~~~~~l~-~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~  385 (402)
T cd00378         307 TDNHLVLVDLRPKGITGKAAEDALE-EAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKD  385 (402)
T ss_pred             CCCeEEEEeCCccCCCHHHHHHHHH-HcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence            234677888853 345566666665 5599997653321      335799987663    4699999999999998875


Q ss_pred             c
Q 015729          373 V  373 (401)
Q Consensus       373 ~  373 (401)
                      -
T Consensus       386 ~  386 (402)
T cd00378         386 A  386 (402)
T ss_pred             c
Confidence            3

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.97  E-value=4e-29  Score=234.77  Aligned_cols=282  Identities=16%  Similarity=0.102  Sum_probs=215.0

Q ss_pred             ccHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHhccCC------------CC--CeEEEEcCCcchHHHHHH
Q 015729           38 PAVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLS------------PG--DRIISFLIGQFSLLWIDQ  102 (401)
Q Consensus        38 ~~~~~~~~~l~~~la~~~g~~-~~~~i~~~~g~t~a~~~~~~~~~~------------~g--d~vl~~~~~~~~~~~~~~  102 (401)
                      +...+..+++++.+++++|.+ .+..+++|+|+|+|+..++.+...            ++  +.|+++.++|++..  ..
T Consensus        34 ~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~--~~  111 (345)
T cd06450          34 PAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVE--KA  111 (345)
T ss_pred             chhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHH--HH
Confidence            345566778888889999986 444589999999999988866421            23  36677777777643  45


Q ss_pred             HHHcCCcEEEEeCCCCCCCChHHHHHHHhcc--CCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEeccccc
Q 015729          103 QQRLNFNVDVVESDWGEGAKLDVLASKLAAD--TAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI  180 (401)
Q Consensus       103 ~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~--~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~  180 (401)
                      ++..|++++.+++++++.+|++++++++++.  .+.+++++++++++|++|.+.|+++|.++|++  +|+++|+|++|+.
T Consensus       112 ~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~--~~~~l~vD~a~~~  189 (345)
T cd06450         112 AAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEK--YDLWLHVDAAYGG  189 (345)
T ss_pred             HHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHH--hCCeEEEechhhH
Confidence            5667999999999887789999999999751  11256888999999999999999999999999  9999999999988


Q ss_pred             CcceeccCc------ccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHH
Q 015729          181 CAIDFRMDE------WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQ  254 (401)
Q Consensus       181 ~~~~~~~~~------~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  254 (401)
                      +..+.+...      .++|++.+|+||++++|.|+|+++++                                       
T Consensus       190 ~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~---------------------------------------  230 (345)
T cd06450         190 FLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR---------------------------------------  230 (345)
T ss_pred             HHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH---------------------------------------
Confidence            765443221      36899999999999888888988765                                       


Q ss_pred             HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCC----CCCHHHHHHHHHhh
Q 015729          255 LLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS----HINSSEIVRRAWQR  329 (401)
Q Consensus       255 ~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~L~~~  329 (401)
                       ++++.++++.+...++++..++..++++++.+.|.++ ++.+..+.   .. .++.|.++.    +.+..++.+.|.++
T Consensus       231 -~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---~~-~iv~f~~~~~~~~~~~~~~i~~~L~~~  305 (345)
T cd06450         231 -ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEP---NL-SLVCFRLKPSVKLDELNYDLSDRLNER  305 (345)
T ss_pred             -HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC---ce-eEEEEEECCcchhhHHHHHHHHHHHhc
Confidence             1355677777777788999999999999999999987 77665421   23 356666654    24567899999866


Q ss_pred             CCeEEccCCCCCCCcEEEEeecccC-CHHHHHHHHHHHHH
Q 015729          330 YNLSLGLGLNKVAGKVFRIGHLGHL-NELQLLGCLAGVEM  368 (401)
Q Consensus       330 ~~i~v~~g~~~~~~~~~Ri~~~~~~-~~~di~~~~~~i~~  368 (401)
                       |+.+.++.....+.++|+++...+ |++|+|+++++|++
T Consensus       306 -g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         306 -GGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             -CCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence             544444322123567999998764 99999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.97  E-value=6.9e-28  Score=228.66  Aligned_cols=336  Identities=10%  Similarity=0.031  Sum_probs=241.9

Q ss_pred             CcCChHHHHHHHccCcCC-----CCCccHHHHHHHHHHHHHHHhcCCCC-ceEE--ecCChhHHHHHHHhccC-------
Q 015729           17 PVHIPDQVIRAMNRNNED-----YRSPAVPALTKTLLEDIKKIFKTTSG-TPFL--IPTTGTGAWESALTNTL-------   81 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~-~~i~--~~~g~t~a~~~~~~~~~-------   81 (401)
                      ++++.+++.+++......     ...+...+..+++++.+++++|.+++ +++.  +|+|||+|+..++.+..       
T Consensus        50 tt~~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~  129 (431)
T TIGR01788        50 TTWMEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRM  129 (431)
T ss_pred             CCCCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHH
Confidence            777787787777664321     12233447788999999999999732 2244  48999999998874421       


Q ss_pred             -CC-----CCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC-CCCChHHHHHHHhccCCCCceEEEEEecCCCccccc
Q 015729           82 -SP-----GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN  154 (401)
Q Consensus        82 -~~-----gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~  154 (401)
                       ..     ...|+++..+|++..  +.++..|++++.++++.+ +.+|+++|+++++++    +.+|++++++|.+|.+.
T Consensus       130 ~~~g~~~~~~~ii~s~~~H~sv~--ka~~~lg~~v~~i~~d~~~~~vd~~~L~~~i~~~----t~lV~~t~g~t~tG~id  203 (431)
T TIGR01788       130 EAAGKPTDKPNLVMGSNVQVCWE--KFARYFDVELREVPMDPGRYVIDPEQVVEAVDEN----TIGVVCILGTTYTGEYE  203 (431)
T ss_pred             HhcCCCCCCcEEEEcCcchHHHH--HHHHHcCceeEEEecCCCceeeCHHHHHHHHhhC----CeEEEEEeCCCCCcccC
Confidence             11     136888888888764  667778999999999875 489999999999854    58999999999999999


Q ss_pred             chHHHHHHhhhcCC------CcEEEEecccccCc-------ceeccCcccceEEEecCCCcccCCCcceEEEecHHH-H-
Q 015729          155 NLSKVRKLLDEYRH------PALFLVDGVSSICA-------IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKA-L-  219 (401)
Q Consensus       155 ~l~~i~~l~~~~~~------~~~li~D~a~~~~~-------~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~-~-  219 (401)
                      |+++|.++|++  +      |+++++|++++.+.       .++++...++|.+++|+||++.+|.|+|+++++++. . 
T Consensus       204 pi~~I~~i~~~--~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~  281 (431)
T TIGR01788       204 DVKALNDALDE--YNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALP  281 (431)
T ss_pred             CHHHHHHHHHH--HHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCCcEEEEEeChHHcc
Confidence            99999999999  7      89999999999544       344555567899999999998789999999988752 1 


Q ss_pred             HHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCcccc
Q 015729          220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCT  298 (401)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~  298 (401)
                      +.+...   ..|....     . ......++.+...+++.+..+..+...|++++.++..++++++.+.|++. ++++..
T Consensus       282 ~~~~~~---~~yl~~~-----~-~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~  352 (431)
T TIGR01788       282 EELIFH---VNYLGGD-----E-PTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIIS  352 (431)
T ss_pred             hhheec---ccccCCC-----C-CCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEee
Confidence            222111   0011000     0 00011122333344566777777777889999999999999999999998 688775


Q ss_pred             CCCccCCceeEEEEcCC----CCCHHHHHHHHHhhCCeEEccCCCC--CCCc-EEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          299 QKEEWFSDTVTAVIVPS----HINSSEIVRRAWQRYNLSLGLGLNK--VAGK-VFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~~----~~~~~~l~~~L~~~~~i~v~~g~~~--~~~~-~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      +.+  .. .+++|.++.    +.+..++.+.|.++ |+.+.....+  ..+. .+|+++...++++.++++++.|++++.
T Consensus       353 ~~~--~~-~iV~Fr~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~  428 (431)
T TIGR01788       353 DGS--GI-PLVAFKLKDDADPGYTLYDLSHRLRER-GWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALA  428 (431)
T ss_pred             CCC--Cc-eEEEEEeCCCCCCCcCHHHHHHHHHHC-CCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            421  23 577788742    35677899999765 8765333221  2233 489998888999999999999999887


Q ss_pred             hc
Q 015729          372 DV  373 (401)
Q Consensus       372 ~~  373 (401)
                      ++
T Consensus       429 ~~  430 (431)
T TIGR01788       429 YL  430 (431)
T ss_pred             hh
Confidence            64

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=1.4e-28  Score=232.04  Aligned_cols=311  Identities=14%  Similarity=0.097  Sum_probs=225.8

Q ss_pred             CcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcch
Q 015729           17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFS   96 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~   96 (401)
                      |...++.+.+++.+..... .+.+.....++++.++++++.++ +++++++|+++++..++.+++++||+|++++|+|+.
T Consensus        40 ~~~~~~~v~~a~~~~~~~~-~~~p~~g~~~lr~~ia~~~~~~~-~~i~~t~G~~~~l~~~~~~~~~~gd~v~~~~p~y~~  117 (359)
T PRK03158         40 PYGPSPKVKEAIAAHLDEL-ALYPDGYAPELRTKVAKHLGVDE-EQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQ  117 (359)
T ss_pred             CCCCCHHHHHHHHHHHHHh-hcCCCCcHHHHHHHHHHHhCCCH-HHEEECCCHHHHHHHHHHHHhCCCCEEEEcCCCHHH
Confidence            4446777888877643221 12222456789999999999865 459999999999998888889999999999998765


Q ss_pred             HHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEec
Q 015729           97 LLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDG  176 (401)
Q Consensus        97 ~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~  176 (401)
                      +.  ..+...|++++.++++ ++.+|++++++.++    ++++++++++|+||||.+++.+++.++++..++|++||+|+
T Consensus       118 ~~--~~~~~~g~~~~~~~~~-~~~~d~~~l~~~~~----~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De  190 (359)
T PRK03158        118 YR--HNAIIEGAEVREVPLK-DGGHDLEAMLKAID----EQTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDE  190 (359)
T ss_pred             HH--HHHHHcCCeEEEEecC-CCCcCHHHHHHhcC----CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEEC
Confidence            43  4567789999999987 56789999998876    35689999999999999999999999998855699999999


Q ss_pred             ccccCcce----e---ccCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCC
Q 015729          177 VSSICAID----F---RMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP  248 (401)
Q Consensus       177 a~~~~~~~----~---~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  248 (401)
                      +|......    .   ..+.....+++.|.+|.++ .+.++|++++++++.+.+.....                    .
T Consensus       191 ~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~~--------------------~  250 (359)
T PRK03158        191 AYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASEELIEKLNIARP--------------------P  250 (359)
T ss_pred             chHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCHHHHHHHHHhcC--------------------C
Confidence            98643211    0   0112345788899999984 23346999999998877654211                    1


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHh
Q 015729          249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQ  328 (401)
Q Consensus       249 ~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  328 (401)
                      +..+.....++.++++.  ...+++.++.++++++.+.+.|.+.|+.+..+     .+.++++.++  .+..++.+.|.+
T Consensus       251 ~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~g~~i~~~~~--~~~~~~~~~l~~  321 (359)
T PRK03158        251 FNTTRIAQYAAIAALED--QAFLKECVEKNAEGLEQYYAFCKEYGLFYYPS-----QTNFIFVDTG--RDANELFEALLK  321 (359)
T ss_pred             CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCeeCCC-----cCcEEEEECC--CCHHHHHHHHHH
Confidence            12444444444444431  11245566667778888888888777665432     2346777763  367889999986


Q ss_pred             hCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          329 RYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       329 ~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      + ||.+.+|.....++++||++.   +.+|.++++++|+++
T Consensus       322 ~-gv~v~~g~~f~~~~~iRi~~~---~~~~~~~l~~al~~~  358 (359)
T PRK03158        322 K-GYIVRSGAALGFPTGVRITIG---LKEQNDKIIELLKEL  358 (359)
T ss_pred             C-CeEEeeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHh
Confidence            5 999999854434678999754   799999999999875

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.97  E-value=2.4e-28  Score=235.98  Aligned_cols=339  Identities=14%  Similarity=0.063  Sum_probs=244.2

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCC-----------CccHHHHHH-HHHHHHHHHhcCCCCceEEec---CChhHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYR-----------SPAVPALTK-TLLEDIKKIFKTTSGTPFLIP---TTGTGAW   73 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~-----------~~~~~~~~~-~l~~~la~~~g~~~~~~i~~~---~g~t~a~   73 (401)
                      ++.+++|+--.+++.|++++.......+           +....+.++ ..++.+++++|.++.+ +.++   +||++|+
T Consensus        35 ~~l~l~~sen~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~-~~~~~~~~sgt~an  113 (452)
T PTZ00094         35 EGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEE-WGVNVQPYSGSPAN  113 (452)
T ss_pred             cCeeEecccccCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCccc-ceeecCCCchHHHH
Confidence            5778888888999999999988543221           122234444 4788999999997654 5455   7899999


Q ss_pred             HHHHhccCCCCCeEEEEcCCcchHHHHH--HHH------HcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEe
Q 015729           74 ESALTNTLSPGDRIISFLIGQFSLLWID--QQQ------RLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVH  145 (401)
Q Consensus        74 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~--~~~------~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~  145 (401)
                      ..++.+++++||+|++...+|.++....  ..+      ..+.++..++.+.++.+|++++++.+++   .+++++++. 
T Consensus       114 ~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~---~~~~lvi~~-  189 (452)
T PTZ00094        114 FAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKA---FRPKLIIAG-  189 (452)
T ss_pred             HHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHH---hCCCEEEEe-
Confidence            9999999999999999888777664211  100      1113344455666688999999999964   245666654 


Q ss_pred             cCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccC---cccceEEEecCCCcccCCCcceEEEecHHHHHHh
Q 015729          146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD---EWGIDVALTGSQKALSLPTGMGIVCASPKALEAS  222 (401)
Q Consensus       146 ~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~---~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~  222 (401)
                       ++.+|...|+++|.++|++  +|+++++|++|++|..+.+..   ..++|++++|+||||.||.| |+++++++..+.+
T Consensus       190 -~s~~g~~~di~~I~~i~~~--~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP~G-g~l~~~~~~~~~l  265 (452)
T PTZ00094        190 -ASAYPRDIDYKRFREICDS--VGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRS-GLIFYRKKVKPDI  265 (452)
T ss_pred             -CCCCCCccCHHHHHHHHHH--cCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCCCc-eEEEEecccchHH
Confidence             3469999999999999999  999999999999998755432   12699999999999988887 8888877654433


Q ss_pred             ccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCc
Q 015729          223 KTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEE  302 (401)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  302 (401)
                      ........+             +.+.++++...++++.++++.+...+++...++..++++++.+.|.+.|+++..+...
T Consensus       266 ~~~~~~~~~-------------p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~~  332 (452)
T PTZ00094        266 ENKINEAVF-------------PGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKRGYDLVTGGTD  332 (452)
T ss_pred             HHhhccccC-------------CCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCCC
Confidence            221110000             1123458888899999999998777778899999999999999998888887653221


Q ss_pred             cCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEc-cCCCC----CCCcEEEEeecccCC----HHHHHHHHHHHHHHHHh
Q 015729          303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLG-LGLNK----VAGKVFRIGHLGHLN----ELQLLGCLAGVEMILKD  372 (401)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~-~g~~~----~~~~~~Ri~~~~~~~----~~di~~~~~~i~~~l~~  372 (401)
                       ....++.+.. .+.+..++...|. +.||.+. .+..+    ..++.+|+|++.+++    ++|++++++.|+++++.
T Consensus       333 -~~~~~v~~~~-~~~~~~~~~~~L~-~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~  408 (452)
T PTZ00094        333 -NHLVLVDLRP-FGITGSKMEKLLD-AVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKL  408 (452)
T ss_pred             -CceEeecCCc-CCCCHHHHHHHHH-HCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence             1112223333 4567778888885 4599984 33221    224689999977666    99999999999998874

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.97  E-value=5.2e-28  Score=232.23  Aligned_cols=330  Identities=12%  Similarity=0.047  Sum_probs=228.2

Q ss_pred             cCChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhcCC-----CCceEEecCChhHHHHHHHhccCCCCCeEEEE
Q 015729           18 VHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTT-----SGTPFLIPTTGTGAWESALTNTLSPGDRIISF   90 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~-----~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   90 (401)
                      .+.++++.+++.+....  ...+.......++|+.++++++..     .++++++|+|+++|+..++.+++++||+|+++
T Consensus        68 ~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~  147 (430)
T PLN00145         68 FRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLP  147 (430)
T ss_pred             CCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEc
Confidence            46667788877764322  223333456778999999888542     33569999999999999999999999999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhh
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE  165 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~  165 (401)
                      .|+|+.+.  ..+...|++++.+++..  ++.+|++++++.+++    +++++++++|+||||.+++   +++|.++|++
T Consensus       148 ~P~y~~y~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~  221 (430)
T PLN00145        148 RPGYPLYE--ARAVFSGLEVRHFDLLPERGWEVDLEGVEALADE----NTVAMVIINPNNPCGSVYSYEHLAKIAETARK  221 (430)
T ss_pred             CCCCccHH--HHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCc----CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            99877654  45677899999988643  467899999998874    5699999999999999998   6678888998


Q ss_pred             cCCCcEEEEecccccCcc---e-ec---cCcccceEEEecCCCcccC-CCcceEEEec--HHHHHHhccCCCCccccchH
Q 015729          166 YRHPALFLVDGVSSICAI---D-FR---MDEWGIDVALTGSQKALSL-PTGMGIVCAS--PKALEASKTAKSVRVFFDWK  235 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~~---~-~~---~~~~~~di~~~s~~K~l~g-~~g~G~l~~~--~~~~~~~~~~~~~~~~~~~~  235 (401)
                        +|++||+|++|.....   + ..   .......+++.|.+|.++. +.++||+++.  +.++.....          .
T Consensus       222 --~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~----------~  289 (430)
T PLN00145        222 --LGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKV----------V  289 (430)
T ss_pred             --cCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHH----------H
Confidence              9999999999874321   1 11   1222356889999999632 2347999873  332221100          0


Q ss_pred             HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccc-cCCCccCCceeEEEEc
Q 015729          236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNC-TQKEEWFSDTVTAVIV  313 (401)
Q Consensus       236 ~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~  313 (401)
                      .....+...   ...++.....++..+++.-.+..+++.+++++++++.+.+.|++. |+... .+    ....++++++
T Consensus       290 ~~~~~~~~~---~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P----~ga~y~~v~l  362 (430)
T PLN00145        290 DSIRNYLNI---STDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPHKP----EGSMFVMVKL  362 (430)
T ss_pred             HHHHHHhcc---cCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCC----CeeeEEEecc
Confidence            000111100   112334333444444432112236778888999999999999886 66543 23    2446788887


Q ss_pred             CC----CC-CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          314 PS----HI-NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       314 ~~----~~-~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      |.    +. +..+++..|.++.||.+.||......+++||++..  +.++++.++++|++.+.+..
T Consensus       363 ~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~~--~~~~l~~al~rl~~~~~~~~  426 (430)
T PLN00145        363 DLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFAI--DPPSLEDGLERLKSFCLRHA  426 (430)
T ss_pred             ChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCC--CHHHHHHHHHHHHHHHHHhc
Confidence            53    22 55678877777779999999654456899998764  78999999999999987653

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.97  E-value=7.6e-28  Score=230.30  Aligned_cols=335  Identities=15%  Similarity=0.134  Sum_probs=234.7

Q ss_pred             CCCCCCcccccCCCcCChHHHHHHHccCcCCCCC----ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc
Q 015729            4 MYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRS----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN   79 (401)
Q Consensus         4 ~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~   79 (401)
                      ..+.++.||--+.+..+-+++.+++.++.....+    ....+...++++.+++++|.+.   .+++++|++|+..++..
T Consensus        48 ~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~~---~l~~~sG~~an~~ai~~  124 (402)
T TIGR01821        48 TVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKES---ALVFTSGYVANDATLAT  124 (402)
T ss_pred             EEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCCe---EEEECchHHHHHHHHHH
Confidence            4556677777777666777777777665432211    1234567899999999998643   67777889999988876


Q ss_pred             cCC--CCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchH
Q 015729           80 TLS--PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS  157 (401)
Q Consensus        80 ~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~  157 (401)
                      +..  +++.|+.....|.+..  ......|+++..++.     .|++++++.++.....++++|++++++|++|.+.|++
T Consensus       125 l~~~~~~~~v~~~~~~h~s~~--~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~  197 (402)
T TIGR01821       125 LAKIIPGCVIFSDELNHASMI--EGIRHSGAEKFIFRH-----NDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIE  197 (402)
T ss_pred             hhCCCCCCEEEEcchHhHHHH--HHHHHcCCeEEEECC-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHH
Confidence            544  6665555444443332  334556777665543     2788888888643213578999999999999999999


Q ss_pred             HHHHHhhhcCCCcEEEEecccccCcc-ee--c-cC----cccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCc
Q 015729          158 KVRKLLDEYRHPALFLVDGVSSICAI-DF--R-MD----EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR  229 (401)
Q Consensus       158 ~i~~l~~~~~~~~~li~D~a~~~~~~-~~--~-~~----~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~  229 (401)
                      +|.++|++  +|+++|+|++|+.|.. +.  . ..    ...+|+++.+.+|.++ ..| |+++.++++++.+.....  
T Consensus       198 ~i~~l~~~--~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g-~~G-G~i~~~~~~~~~l~~~~~--  271 (402)
T TIGR01821       198 EICDLADK--YGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFG-VVG-GYIAASRKLIDAIRSYAP--  271 (402)
T ss_pred             HHHHHHHH--cCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhc-cCC-ceeecCHHHHHHHHHhCc--
Confidence            99999999  9999999999986532 11  0 01    1236899899999994 555 888899888776653211  


Q ss_pred             cccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeE
Q 015729          230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVT  309 (401)
Q Consensus       230 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~  309 (401)
                                    +..+..+.++..++++.++++.+.+.  +...++..++.+++++.|+++|+++..+    .+ .++
T Consensus       272 --------------~~~~t~~~~~~~~aaa~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~-~i~  330 (402)
T TIGR01821       272 --------------GFIFTTSLPPAIAAGATASIRHLKES--QDLRRAHQENVKRLKNLLEALGIPVIPN----PS-HIV  330 (402)
T ss_pred             --------------CceecCcCCHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHcCCCcCCC----CC-CEE
Confidence                          11112345666677778888877654  4566677789999999999888876543    23 245


Q ss_pred             EEEcCCCCCHHHHHHHHHhhCCeEEccCCCC---CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          310 AVIVPSHINSSEIVRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       310 ~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~---~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                      .+.+++...+.++.+.|++++||.+.+...+   ....++||++..++|++|+++++++|+++++++|.
T Consensus       331 ~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~~~  399 (402)
T TIGR01821       331 PVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDRLGL  399 (402)
T ss_pred             EEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            5555432235678888876669998875332   12357999999999999999999999999998876

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=6e-28  Score=226.73  Aligned_cols=311  Identities=12%  Similarity=0.074  Sum_probs=225.4

Q ss_pred             CCcCChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCC
Q 015729           16 GPVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIG   93 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~   93 (401)
                      .|.+.|+.+++++.+....  ...+. .....++|+.++++++.++. ++++++|+++++..++.+++++||+|++++|.
T Consensus        32 ~~~~~p~~~~~a~~~~~~~~~~~~y~-~~~~~~lr~~ia~~~~~~~~-~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~p~  109 (351)
T PRK14807         32 TPFELPEEVIKNIQEIVKSSQVNIYP-DPTAEKLREELARYCSVVPT-NIFVGNGSDEIIHLIMLAFINKGDVVIYPHPS  109 (351)
T ss_pred             CCCCCCHHHHHHHHHHhhcCcccCCC-CccHHHHHHHHHHHhCCCcc-cEEEecCHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence            3567788888888763321  11122 22357899999999998764 49999999999999988889999999999997


Q ss_pred             cchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEE
Q 015729           94 QFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFL  173 (401)
Q Consensus        94 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li  173 (401)
                      |..+  ...++..|++++.++.+.++.+|++++++.++.   ++++++++++++||||.+++.+++.+++++  ++.++|
T Consensus       110 y~~~--~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~---~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~--~~~~~i  182 (351)
T PRK14807        110 FAMY--SVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEK---YQPKLVFLCNPNNPTGSVIEREDIIKIIEK--SRGIVV  182 (351)
T ss_pred             hHHH--HHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhc---cCCCEEEEeCCCCCCCCCCCHHHHHHHHHh--CCCEEE
Confidence            6643  356788999999999887778999999999874   367999999999999999999999999998  778899


Q ss_pred             EecccccCcc--eec-cCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCC
Q 015729          174 VDGVSSICAI--DFR-MDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY  249 (401)
Q Consensus       174 ~D~a~~~~~~--~~~-~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  249 (401)
                      +|++|....-  ... .......+++.|.+|.++ .+.++|+++.++++.+.+.....                    .+
T Consensus       183 vDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~~--------------------~~  242 (351)
T PRK14807        183 VDEAYFEFYGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKS--------------------PY  242 (351)
T ss_pred             EeCcchhhcccchHHHhhhCCCEEEEecchHhcccchhceeeeecCHHHHHHHHHccC--------------------CC
Confidence            9999853211  001 122345788999999994 34457999999988776654211                    11


Q ss_pred             CCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHh
Q 015729          250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQ  328 (401)
Q Consensus       250 ~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  328 (401)
                      ..+...   +.++...+....+++..+++.++++.+.+.|+++ |+.+..+     .+.++++.++   +..++.+.|.+
T Consensus       243 ~~~~~~---q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~~~-----~~~~~~i~~~---~~~~~~~~l~~  311 (351)
T PRK14807        243 NINSLS---QVIALKVLRTGVLKERVNYILNERERLIKELSKIPGIKVYPS-----KTNFILVKFK---DADYVYQGLLE  311 (351)
T ss_pred             CcCHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECcC-----CccEEEEEcC---CHHHHHHHHHH
Confidence            133332   3333333433345667777788888888899876 7665332     2346778875   46788888876


Q ss_pred             hCCeEEccCCC-CCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          329 RYNLSLGLGLN-KVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       329 ~~~i~v~~g~~-~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      + ||.+.++.. ....+++||++.   +.++.+++++.|++++
T Consensus       312 ~-gV~v~~~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~  350 (351)
T PRK14807        312 R-GILVRDFSKVEGLEGALRITVS---SCEANDYLINGLKELL  350 (351)
T ss_pred             C-CEEEEECCCCCCCCCeEEEEcC---CHHHHHHHHHHHHHhh
Confidence            6 999987642 223568999764   5788889998887753

>PRK08068 transaminase; Reviewed

Probab=99.97  E-value=4.5e-28  Score=230.86  Aligned_cols=315  Identities=12%  Similarity=0.076  Sum_probs=219.5

Q ss_pred             hHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHh----cC--CCCceEEecCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           21 PDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIF----KT--TSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        21 ~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~----g~--~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      ++.+.+++.+....  ...|.......++|+.+++++    |.  ++++++++|+|+++++..++.+++++||+|++++|
T Consensus        47 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P  126 (389)
T PRK08068         47 PEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDP  126 (389)
T ss_pred             CHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCC
Confidence            45667766653221  122333344667888888877    53  33325999999999999998899999999999999


Q ss_pred             CcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccch---HHHHHHhhhcC
Q 015729           93 GQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLLDEYR  167 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l---~~i~~l~~~~~  167 (401)
                      +|+.+.  ..++..|++++.++++.+  ..+|++++++.+.+    +++++++++|+||||.+++.   ++|.++|++  
T Consensus       127 ~y~~~~--~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~----~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~--  198 (389)
T PRK08068        127 GYPDYL--SGVALARAQFETMPLIAENNFLPDYTKIPEEVAE----KAKLMYLNYPNNPTGAVATKAFFEETVAFAKK--  198 (389)
T ss_pred             CCcchH--HHHHhcCCEEEEeecccccCCCCCHHHHHHhccc----cceEEEEECCCCCCCCcCCHHHHHHHHHHHHH--
Confidence            877654  456789999999998753  45788999988863    56999999999999999986   467778888  


Q ss_pred             CCcEEEEecccccCcc----eec---cC-cccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHH
Q 015729          168 HPALFLVDGVSSICAI----DFR---MD-EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYI  238 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~----~~~---~~-~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (401)
                      ++++||+|++|.....    +..   .. .....+++.|.+|.++ .+.++|+++.++++.+.+.....           
T Consensus       199 ~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~l~~~~~-----------  267 (389)
T PRK08068        199 HNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNESVIEAINLLQD-----------  267 (389)
T ss_pred             cCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEecCHHHHHHHHHHHh-----------
Confidence            9999999999853211    111   11 1234688899999983 33447999999988776653211           


Q ss_pred             HHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCC
Q 015729          239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN  318 (401)
Q Consensus       239 ~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  318 (401)
                            .+..++++.. ..++..++..- ...+++.++++.++++.+.+.|++.|+.+..+    ..+.++++.+|++.+
T Consensus       268 ------~~~~~~~~~~-q~~~~~~l~~~-~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~~~----~g~~~~~v~~~~~~~  335 (389)
T PRK08068        268 ------HLFVSLFGAI-QDAAIEALLSD-QSCVAELVARYESRRNAFISACREIGWEVDAP----KGSFFAWMPVPKGYT  335 (389)
T ss_pred             ------hccCCCChHH-HHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC----CeeEEEEEECCCCCC
Confidence                  0011122222 12222222211 12356788889999999999998888765543    344567888876678


Q ss_pred             HHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          319 SSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~--~~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      +.++.+.|.+++||.+.+|..  ....+++||++..  +++++..++++|++
T Consensus       336 ~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~--~~~~l~~al~~l~~  385 (389)
T PRK08068        336 SEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLT--DEERLREAVERIGK  385 (389)
T ss_pred             HHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcC--CHHHHHHHHHHHHH
Confidence            889999998767999999843  2235689998853  67777787777754

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.97  E-value=5.2e-28  Score=230.45  Aligned_cols=320  Identities=13%  Similarity=0.044  Sum_probs=222.6

Q ss_pred             CcCChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHh----cC--CCCceEEecCChhHHHHHHHhccCCCCCeEE
Q 015729           17 PVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIF----KT--TSGTPFLIPTTGTGAWESALTNTLSPGDRII   88 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~----g~--~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl   88 (401)
                      +.+.++.+.+++.+....  ...+.......++|+.+++++    |.  ++++++++|+|+++|+..++.+++.+||+|+
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vl  120 (388)
T PRK07366         41 DLPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFAL  120 (388)
T ss_pred             CCCCCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEE
Confidence            445567778877763321  122333344567888888877    43  3332599999999999999999999999999


Q ss_pred             EEcCCcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccch---HHHHHHh
Q 015729           89 SFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLL  163 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l---~~i~~l~  163 (401)
                      +++|+|+.+.  ..++..|++++.++++.+  +.+|++++++.+.    .+++++++++|+||||.+++.   ++|.++|
T Consensus       121 v~~P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~----~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a  194 (388)
T PRK07366        121 LLDPGYPSHA--GGVYLAGGQIYPMPLRAENDFLPVFADIPTEVL----AQARLMVLSYPHNPTTAIAPLSFFQEAVAFC  194 (388)
T ss_pred             EcCCCCcchH--HHHHhcCCEEEEEECCCccCCCCCHHHHHHhhc----ccceEEEEeCCCCCCCccCCHHHHHHHHHHH
Confidence            9999877654  567789999999998754  3567888877765    356999999999999999975   4567788


Q ss_pred             hhcCCCcEEEEecccccCcce--------eccCcc-cceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccc
Q 015729          164 DEYRHPALFLVDGVSSICAID--------FRMDEW-GIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFD  233 (401)
Q Consensus       164 ~~~~~~~~li~D~a~~~~~~~--------~~~~~~-~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~  233 (401)
                      ++  +|++||+|++|......        .+.+.. ...+++.|.+|.++ .+.++|+++.++++++++...+..     
T Consensus       195 ~~--~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~li~~l~~~~~~-----  267 (388)
T PRK07366        195 QQ--HDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNAQLIQALRQVKAV-----  267 (388)
T ss_pred             HH--cCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcCCHHHHHHHHHHHhh-----
Confidence            88  99999999998643210        111111 23578899999984 344579999999987776542110     


Q ss_pred             hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEc
Q 015729          234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV  313 (401)
Q Consensus       234 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~  313 (401)
                             .  .   .++++.. ..++.+++.. ....+++.++.++++++.+.+.|++.|+.+..+    ..+.++|+++
T Consensus       268 -------~--~---~~~~~~~-~~~a~~~l~~-~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~p----~~g~f~~~~~  329 (388)
T PRK07366        268 -------V--D---FNQYRGI-LNGAIAALTG-PQATVQQTVQIFRQRRDAFINALHQIGWPVPLP----EATMYVWAKL  329 (388)
T ss_pred             -------c--c---cCCCHHH-HHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC----CeeEEEEEEC
Confidence                   0  0   1112221 1222233321 122367788889999999999998887654433    3457888998


Q ss_pred             CCCC--CHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          314 PSHI--NSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       314 ~~~~--~~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      |+..  +..++++.|.++.||.+.+|...  ...+++||++..  +++++++++++|++.
T Consensus       330 ~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~--~~~~l~~~l~rl~~~  387 (388)
T PRK07366        330 PEPWQGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVH--DPDILEEAVERIAAF  387 (388)
T ss_pred             CcccCCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecC--CHHHHHHHHHHHHHh
Confidence            7542  46788888766669999998432  224789998764  789999999999865

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.97  E-value=8.3e-28  Score=222.51  Aligned_cols=315  Identities=19%  Similarity=0.161  Sum_probs=242.2

Q ss_pred             CCcCChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCc
Q 015729           16 GPVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQ   94 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~   94 (401)
                      -|.+.++++.+++.+.... ++.+..  ...++++.+++++|...++.|++++|+++.+..++++++.+||+|+++.|.|
T Consensus        32 nP~gp~~~~~~~~~~~~~~~~rYPd~--~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~~~gd~vl~~~Ptf  109 (356)
T COG0079          32 NPYGPPPKVIEAIRAALDKLNRYPDP--DYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTF  109 (356)
T ss_pred             CCCCCCHHHHHHHHHHHHhhccCCCC--cHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhhcCCCEEEEcCCCh
Confidence            4777778888888775532 333333  5779999999999954444588899999999999999999999999999964


Q ss_pred             chHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEE
Q 015729           95 FSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLV  174 (401)
Q Consensus        95 ~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~  174 (401)
                      ..+  ...++..|++++.++... +..|.+.+.+.+++    +++++++++||||||...+.++|.++++..+.+++|++
T Consensus       110 ~~Y--~~~a~~~g~~~~~v~~~~-~~~d~~~~~~~~~~----~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVv  182 (356)
T COG0079         110 SMY--EIAAQLAGAEVVKVPLKE-FRLDLDAILAAIRD----KTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVI  182 (356)
T ss_pred             HHH--HHHHHhcCCeEEEecccc-cccCHHHHHHhhhc----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence            433  356888999999999988 88899999998874    56999999999999999999999999998545999999


Q ss_pred             ecccccCccee--ccC-cccceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCC
Q 015729          175 DGVSSICAIDF--RMD-EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY  249 (401)
Q Consensus       175 D~a~~~~~~~~--~~~-~~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  249 (401)
                      |+|+.-.+.+.  ... ..+.-+++-|.+|.+ |.+|  +|+++.++++++.+...+.                    ++
T Consensus       183 DEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~-gLAGlRlGy~ia~~~~i~~l~~vr~--------------------p~  241 (356)
T COG0079         183 DEAYIEFSPESSLELLKYPPNLIVLRTFSKAF-GLAGLRVGYAIANPELIAALNKVRP--------------------PF  241 (356)
T ss_pred             eCchhhcCCchhhhhccCCCCEEEEEecHHhh-hcchhceeeccCCHHHHHHHHHhcC--------------------CC
Confidence            99987544321  111 233468888999987 4655  5999999999988876532                    44


Q ss_pred             CCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCc-cccCCCccCCceeEEEEcCCCCCHHHHHHHHHh
Q 015729          250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK-NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQ  328 (401)
Q Consensus       250 ~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  328 (401)
                      +.+....++..++++.-  +.+++..++..+.++++.+.|+++|+. +..+    .. .++.+++++.. +..+.+.|++
T Consensus       242 ~v~~~a~~aa~aal~~~--~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS----~a-NFvlv~~~~~~-~~~l~~~L~~  313 (356)
T COG0079         242 NVSSPALAAAIAALRDA--DYLEESVERIREERERLYAALKALGLFGVFPS----QA-NFVLVRVPDAE-AAALAEALLK  313 (356)
T ss_pred             CCCHHHHHHHHHHcccH--HHHHHHHHHHHHHHHHHHHHHHhCCCCeecCC----CC-cEEEEECCCcc-HHHHHHHHHH
Confidence            56665555666655533  346788889999999999999998744 4442    23 46778886533 5688899987


Q ss_pred             hCCeEEccCCC-CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          329 RYNLSLGLGLN-KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       329 ~~~i~v~~g~~-~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      + ||.++.... ....+++||+. +  |++|-++++++|+++++.
T Consensus       314 ~-giivR~~~~~~~~~~~lRitv-g--t~een~~ll~AL~~~~~~  354 (356)
T COG0079         314 K-GILVRDCSSVGLLPGYLRITV-G--TPEENDRLLAALREVLKG  354 (356)
T ss_pred             C-CEEEEeCCCCCCCCCeEEEEe-C--CHHHHHHHHHHHHHHHhc
Confidence            7 999998754 33456899964 3  788889999999998864

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=5.9e-28  Score=228.12  Aligned_cols=317  Identities=12%  Similarity=0.091  Sum_probs=227.1

Q ss_pred             CcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcch
Q 015729           17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFS   96 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~   96 (401)
                      +.+.++.+++++.+.......+... ...++++.++++++.++. ++++++|+++++..++..++++||.|++..|+|+.
T Consensus        43 ~~~~~~~~~~a~~~~~~~~~~Y~~~-~~~~Lr~~ia~~~~~~~~-~I~it~G~~~~l~~~~~~~~~~gd~vlv~~p~y~~  120 (369)
T PRK08153         43 GFGPSPSVIAAMREAAAEIWKYGDP-ENHDLRHALAAHHGVAPE-NIMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPT  120 (369)
T ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCC-ccHHHHHHHHHHhCCCHH-HEEEcCCHHHHHHHHHHHhcCCCCEEEECCCcchH
Confidence            5677788888887643221222212 267999999999988654 59999999999999988889999999999998776


Q ss_pred             HHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEec
Q 015729           97 LLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDG  176 (401)
Q Consensus        97 ~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~  176 (401)
                      +.  ..++..|++++.++.+.+ .+|++++++.+..   .+++++++++|+||||.+.+.+++.++++.++++++||+|+
T Consensus       121 ~~--~~~~~~g~~~~~vp~~~~-~~~~~~l~~~~~~---~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE  194 (369)
T PRK08153        121 FN--YHVAGFGGRLVTVPYRDD-REDLDALLDAARR---ENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDE  194 (369)
T ss_pred             HH--HHHHHcCCeEEEeeCCCC-CCCHHHHHHHhcc---cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeC
Confidence            54  345668999999998655 4788888877653   35789999999999999999999999988755699999999


Q ss_pred             ccccCcce---eccC-cccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCC
Q 015729          177 VSSICAID---FRMD-EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP  251 (401)
Q Consensus       177 a~~~~~~~---~~~~-~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  251 (401)
                      ++......   .... .....+++.|.+|.++ .+..+|+++++++..+.+.....                    .++.
T Consensus       195 ~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~~l~~~~~--------------------~~~~  254 (369)
T PRK08153        195 AYCETAPAGAAPPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRN--------------------HFGM  254 (369)
T ss_pred             chhhhcCcccchhhhhcCCCEEEEecchHhccCcchheeeeecCHHHHHHHHHhhc--------------------CCCC
Confidence            98643211   1111 1224578899999985 33446999999988776653211                    1124


Q ss_pred             cHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC-CCCHHHHHHHHHhhC
Q 015729          252 SIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS-HINSSEIVRRAWQRY  330 (401)
Q Consensus       252 ~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~  330 (401)
                      +...+.++.++++.  ...+++.++.++++++.+.+.|++.|+....     ....++++.++. ...+.++.+.|.++ 
T Consensus       255 s~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~p-----~~~~f~~~~~~~~~~~a~~l~~~l~~~-  326 (369)
T PRK08153        255 NRIAQAAALAALKD--QAYLAEVVGKIAAARDRIAAIARANGLTPLP-----SATNFVAIDCGRDGAFARAVLDGLIAR-  326 (369)
T ss_pred             CHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCccCC-----CcCcEEEEECCCCcccHHHHHHHHHHC-
Confidence            45444455555531  1225667778888888899989887775432     123466777642 34567888888766 


Q ss_pred             CeEEc-cCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          331 NLSLG-LGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       331 ~i~v~-~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ||.++ ++... ..+++|+++.   +++|++.+++++++++..+
T Consensus       327 Gi~v~~p~~~~-~~~~iRis~~---~~~~~~~~~~al~~~~~~~  366 (369)
T PRK08153        327 DIFVRMPGVAP-LDRCIRVSCG---PDEELDLFAEALPEALEAA  366 (369)
T ss_pred             CeEEeeCCCCC-CCCeEEEecC---CHHHHHHHHHHHHHHHHHh
Confidence            99995 55322 2468999754   6899999999999988643

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.97  E-value=1.2e-27  Score=227.22  Aligned_cols=322  Identities=16%  Similarity=0.114  Sum_probs=226.7

Q ss_pred             CcCChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCc
Q 015729           17 PVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQ   94 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~   94 (401)
                      +.+.++.+.+++.+....  ...+.......++|+.+++++|.++. ++++++|+++|+..++.+++.+||+|++++++|
T Consensus        39 ~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~-~v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y  117 (380)
T PRK06225         39 HLGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDLGLDDD-EALITAGATESLYLVMRAFLSPGDNAVTPDPGY  117 (380)
T ss_pred             CCCCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhcCCCCC-cEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence            456677788887765432  12233344578999999999998765 599999999999999988899999999999987


Q ss_pred             chHHHHHHHHHcCCcEEEEeCCC---CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCC
Q 015729           95 FSLLWIDQQQRLNFNVDVVESDW---GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRH  168 (401)
Q Consensus        95 ~~~~~~~~~~~~g~~~~~v~~~~---~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~  168 (401)
                      +..  ...++..|++++.++++.   ++.+|++++++.+++    +++++++++|+||||.+++   +++|.++|++  +
T Consensus       118 ~~~--~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~----~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~--~  189 (380)
T PRK06225        118 LII--DNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDE----NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARD--N  189 (380)
T ss_pred             cch--HHHHHHhCceEEeeccccccCCccCCHHHHHhhcCC----CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHH--C
Confidence            654  355678899999988642   346899999998864    5689999999999999986   7778888888  9


Q ss_pred             CcEEEEecccccC---cceeccCcccceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhc
Q 015729          169 PALFLVDGVSSIC---AIDFRMDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL  243 (401)
Q Consensus       169 ~~~li~D~a~~~~---~~~~~~~~~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (401)
                      |+++|+|+++...   ............+++.|.+|++ |++|  +|++++++++.+.+....                .
T Consensus       190 ~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~-g~~G~RiG~i~~~~~l~~~~~~~~----------------~  252 (380)
T PRK06225        190 DAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIF-GMAGLRIGAVVATPDLIEVVKSIV----------------I  252 (380)
T ss_pred             CcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhc-CCccceeEEEecCHHHHHHHHHHH----------------h
Confidence            9999999997421   1111101123567788999998 4455  699999998877655321                0


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCC-CCCHHH
Q 015729          244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS-HINSSE  321 (401)
Q Consensus       244 g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  321 (401)
                      +   ..+.+.....++.++++... ..+++.++.++++.+.+.+.|+++ |+.+... +  ..+.++++.+++ +.+..+
T Consensus       253 ~---~~~~~~~~~~~a~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~--~~g~~~~~~~~~~~~~~~~  325 (380)
T PRK06225        253 N---DLGTNVIAQEAAIAGLKVKD-EWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVY-P--SHGNMMVIDISEAGIDPED  325 (380)
T ss_pred             c---ccCCCHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHhCcCCccccC-C--CCCeEEEEEcccccCCHHH
Confidence            1   11233333333334443211 124556666777788888888885 6433211 1  123467788753 467889


Q ss_pred             HHHHHHhhCCeEEccCCCC---CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          322 IVRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       322 l~~~L~~~~~i~v~~g~~~---~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      +++.|.++ ||.+.+|...   ...+++|+++..  +++++++++++|+++++++.
T Consensus       326 l~~~l~~~-gi~v~~g~~~~~~~~~~~iR~s~~~--~~e~l~~~~~~l~~~~~~~~  378 (380)
T PRK06225        326 LVEYLLER-KIFVRQGTYTSKRFGDRYIRVSFSI--PREQVEVFCEEFPDVVETLR  378 (380)
T ss_pred             HHHHHHHC-CEEEcCCcccCcCCCCceEEEEeCC--CHHHHHHHHHHHHHHHHHhh
Confidence            99999855 9999998432   124589998754  79999999999999998653

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.97  E-value=2.7e-28  Score=229.62  Aligned_cols=310  Identities=14%  Similarity=0.081  Sum_probs=225.0

Q ss_pred             CCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcc
Q 015729           16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF   95 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~   95 (401)
                      .|.++++.+++++.+.......+ +.....++++.++++++.+++ ++++++|+++++..++.+++++||+|++++|+|+
T Consensus        39 n~~~~~~~v~~a~~~~~~~~~~Y-p~~g~~~Lr~aia~~~~~~~~-~I~vt~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~  116 (366)
T PRK01533         39 NPFGCSPRVLDELQKSWLDHALY-PDGGATTLRQTIANKLHVKME-QVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFP  116 (366)
T ss_pred             CCCCCCHHHHHHHHHHHHhcCcC-CCCCHHHHHHHHHHHhCCCcc-eEEECCCHHHHHHHHHHHhcCCCCEEEEcCCcHH
Confidence            46778888999887643322222 233467899999999998764 5999999999999999999999999999999766


Q ss_pred             hHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEe
Q 015729           96 SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD  175 (401)
Q Consensus        96 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D  175 (401)
                      .+.  ..++..|++++.++.+. +.+|++++++.+++    +++++++++|+||||.+++.+++.++++....+.++|+|
T Consensus       117 ~~~--~~~~~~g~~v~~v~~~~-~~~d~~~l~~~~~~----~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~~~iiD  189 (366)
T PRK01533        117 QYR--HHAIIEGCEVKEVALNN-GVYDLDEISSVVDN----DTKIVWICNPNNPTGTYVNDRKLTQFIEGISENTLIVID  189 (366)
T ss_pred             HHH--HHHHHcCCEEEEeecCC-CCcCHHHHHHHhCc----CCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCCEEEEE
Confidence            543  56788899999999864 46899999998864    568999999999999999988777776653234467889


Q ss_pred             cccccCcce------ec-cCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCC
Q 015729          176 GVSSICAID------FR-MDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFW  247 (401)
Q Consensus       176 ~a~~~~~~~------~~-~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  247 (401)
                      ++|......      .. .......+++.|.+|.++ .+..+|++++++++.+.+.....                    
T Consensus       190 e~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~~~~--------------------  249 (366)
T PRK01533        190 EAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVRL--------------------  249 (366)
T ss_pred             ccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCHHHHHHHHHhcC--------------------
Confidence            997532211      01 112345689999999985 33446999999988877754311                    


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHH
Q 015729          248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAW  327 (401)
Q Consensus       248 ~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  327 (401)
                      +++.+.....++.++++.  ....+..++...++++++.+.++.+|+++..+     .+.++++.++   +..++.+.|.
T Consensus       250 ~~~~~~~~q~aa~~~l~~--~~~~~~~~~~~~~~r~~~~~~l~~~g~~~~~~-----~~nf~~~~~~---~~~~~~~~l~  319 (366)
T PRK01533        250 PFNVSSLAQKAATIAFGD--DEFIEEIVRVNTEGLRQYESFCKENEIPFYQS-----QTNFIFLPVE---NGGEIYEACA  319 (366)
T ss_pred             CCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhCCCccCCC-----cCcEEEEeCC---CHHHHHHHHH
Confidence            123555444444445431  11245566777788888888888888776653     2346778775   4678888888


Q ss_pred             hhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          328 QRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       328 ~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ++ ||.|++.     ++++||++.   +.+|.++++++|+++++..
T Consensus       320 ~~-GI~Vr~~-----~~~iRis~~---~~~~~~~l~~al~~~~~~~  356 (366)
T PRK01533        320 HA-GFIIRPF-----PNGVRITVG---TREQNEGVISVLQQHFENK  356 (366)
T ss_pred             HC-CcEEccC-----CCceEEeCC---CHHHHHHHHHHHHHHHHhc
Confidence            65 9999962     468999643   7899999999999887643

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.97  E-value=1.5e-27  Score=228.36  Aligned_cols=299  Identities=16%  Similarity=0.113  Sum_probs=219.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE  119 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  119 (401)
                      ..+...++++.+++++|.+  +.+++++| ++++..++.+++++||.|++.++.|++..  ..++..+++++.++.    
T Consensus        85 ~~~l~~~l~~~la~~~g~~--~~i~~tsG-~~a~~~~~~~l~~~gd~vi~~~~~~~~~~--~~~~~~~~~~~~~~~----  155 (397)
T PRK06939         85 TQDLHKELEEKLAKFLGTE--DAILYSSC-FDANGGLFETLLGKEDAIISDALNHASII--DGVRLCKAKRYRYAN----  155 (397)
T ss_pred             CcHHHHHHHHHHHHHhCCC--cEEEEcCh-HHHHHHHHHHhCCCCCEEEEEhhhhHHHH--HHHHhcCCceEEeCC----
Confidence            4567789999999999875  33666665 88999888889999999999999887764  345667888777654    


Q ss_pred             CCChHHHHHHHhccCCC--CceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceec------cC--c
Q 015729          120 GAKLDVLASKLAADTAH--TIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR------MD--E  189 (401)
Q Consensus       120 ~~d~~~le~~~~~~~~~--~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~------~~--~  189 (401)
                       .|++++++.+++..++  ++++++..+.+|++|...++++|.++|++  +|++||+|++|+.+.....      ..  .
T Consensus       156 -~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~--~~~~li~De~~~~g~~~~~~~~~~~~~~~~  232 (397)
T PRK06939        156 -NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADK--YDALVMVDDSHAVGFVGENGRGTVEHFGVM  232 (397)
T ss_pred             -CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHH--hCCEEEEECcccccCcCCCCCCHHHHcCCC
Confidence             3889999888642212  67788888888999999999999999999  9999999999975432211      11  1


Q ss_pred             ccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh
Q 015729          190 WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE  269 (401)
Q Consensus       190 ~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~  269 (401)
                      .++|++++|.||+++++. .|++++++++++.+.......                .+.++++...++++.++++.+.. 
T Consensus       233 ~~~~i~~~S~sK~~~g~r-~G~v~~~~~~~~~l~~~~~~~----------------~~~~~~~~~~~~a~~~al~~~~~-  294 (397)
T PRK06939        233 DRVDIITGTLGKALGGAS-GGYTAGRKEVIDWLRQRSRPY----------------LFSNSLAPAIVAASIKVLELLEE-  294 (397)
T ss_pred             CCCcEEEEECHHHhCccC-ceEEEeCHHHHHHHHHhCccc----------------cccCCCCHHHHHHHHHHHHHHhc-
Confidence            247899999999996554 599999999887765421100                01223444445666677776643 


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC---CCcEE
Q 015729          270 GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV---AGKVF  346 (401)
Q Consensus       270 g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~---~~~~~  346 (401)
                       .++.++++.++.+++++.|+++|++...+    .. .++.+.++.+.+..++.+.|.++ ||.+.++.++.   ...++
T Consensus       295 -~~~~~~~~~~~~~~l~~~L~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~L~~~-gI~v~~~~~~~~~~~~~~i  367 (397)
T PRK06939        295 -SDELRDRLWENARYFREGMTAAGFTLGPG----EH-PIIPVMLGDAKLAQEFADRLLEE-GVYVIGFSFPVVPKGQARI  367 (397)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHcCCCcCCC----CC-CEEEEEECCHHHHHHHHHHHHHC-CceEeeeCCCCCCCCCceE
Confidence             25678889999999999999887765432    12 23444454434567899999887 99887653321   23579


Q ss_pred             EEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          347 RIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       347 Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                      |+++..+++++|+++++++|+++++++|+
T Consensus       368 Ri~~~~~~~~~~i~~~l~~L~~~~~~~~~  396 (397)
T PRK06939        368 RTQMSAAHTKEQLDRAIDAFEKVGKELGV  396 (397)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            99887778999999999999999988775

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.97  E-value=1.6e-27  Score=225.28  Aligned_cols=289  Identities=17%  Similarity=0.145  Sum_probs=211.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG  120 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~  120 (401)
                      .+...++++.++++++.+.  .+++++ |++++..++.+++++||+|++..+.|++..  ..++..|++++.++.     
T Consensus        60 ~~~~~~l~~~la~~~~~~~--~i~~~~-G~~~~~~~l~~~~~~gd~v~~~~~~~~~~~--~~~~~~g~~~~~~~~-----  129 (360)
T TIGR00858        60 SPLHEELEEELAEWKGTEA--ALLFSS-GYLANVGVISALVGKGDLILSDALNHASLI--DGCRLSGARVRRYRH-----  129 (360)
T ss_pred             cHHHHHHHHHHHHHhCCCC--EEEECc-hHHHHHHHHHHhCCCCCEEEEEccccHHHH--HHHHhcCCceEEecC-----
Confidence            4567889999999998543  355555 567776677778899999999988766553  345667888887763     


Q ss_pred             CChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceec---------cCccc
Q 015729          121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR---------MDEWG  191 (401)
Q Consensus       121 ~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~---------~~~~~  191 (401)
                      +|++++++.+++.++.+++++++.+++|++|...++++|.++|++  +|+++|+|++|+.+....+         ....+
T Consensus       130 ~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~  207 (360)
T TIGR00858       130 NDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAER--YGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEP  207 (360)
T ss_pred             CCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHHH--cCcEEEEECcccccCcCCCCCchHHhcCCCccC
Confidence            489999999875432356888888999999999999999999999  9999999999986543211         12235


Q ss_pred             ceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcH
Q 015729          192 IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGL  271 (401)
Q Consensus       192 ~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~  271 (401)
                      .++++.|.+|+++ +.| |+++.++++.+.+......            +    .+..+.+...++++.++++....  .
T Consensus       208 ~~i~i~s~sK~~~-~~g-G~~~~~~~~~~~~~~~~~~------------~----~~~~~~~~~~~~a~~~al~~~~~--~  267 (360)
T TIGR00858       208 VDIQVGTLSKALG-SYG-AYVAGSQALIDYLINRART------------L----IFSTALPPAVAAAALAALELIQE--E  267 (360)
T ss_pred             CcEEEEechhhhh-ccC-cEEEcCHHHHHHHHHhCcc------------c----eecCCCCHHHHHHHHHHHHHHhh--C
Confidence            7899999999985 566 8999988887765422110            0    00112444555667777776543  3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC---CCCcEEEE
Q 015729          272 ENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK---VAGKVFRI  348 (401)
Q Consensus       272 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~---~~~~~~Ri  348 (401)
                      ++.++++.++.+++.+.|+++++++..+     ...++++.++...+..++.+.|.++ ||.+.++..+   ..++++|+
T Consensus       268 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~-gI~v~~~~~~~~~~~~~~iRi  341 (360)
T TIGR00858       268 PWRREKLLALIARLRAGLEALGFTLMPS-----CTPIVPVIIGDNASALALAEELQQQ-GIFVGAIRPPTVPAGTSRLRL  341 (360)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccCCC-----CCCEEEEEeCCHHHHHHHHHHHHHC-CeeEeeeCCCCCCCCCceEEE
Confidence            5678999999999999999887665532     2346777775444567899999766 9999865332   12458999


Q ss_pred             eecccCCHHHHHHHHHHHH
Q 015729          349 GHLGHLNELQLLGCLAGVE  367 (401)
Q Consensus       349 ~~~~~~~~~di~~~~~~i~  367 (401)
                      ++..+++++|+++++++|+
T Consensus       342 s~~~~~~~~~i~~~l~~l~  360 (360)
T TIGR00858       342 TLSAAHTPGDIDRLAEALK  360 (360)
T ss_pred             EEcCCCCHHHHHHHHHhhC
Confidence            9998899999999999873

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.97  E-value=8.9e-28  Score=229.37  Aligned_cols=318  Identities=14%  Similarity=0.046  Sum_probs=220.3

Q ss_pred             CcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHh----cCC---CCceEEecCChhHHHHHHHhccCCC---CCe
Q 015729           17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF----KTT---SGTPFLIPTTGTGAWESALTNTLSP---GDR   86 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~---~~~~i~~~~g~t~a~~~~~~~~~~~---gd~   86 (401)
                      +.++++.+.+++.+.......|.......++|+.+++++    |.+   +++++++|+|+++|+..++.+++++   ||+
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~  119 (396)
T PRK09147         40 KHPTPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPL  119 (396)
T ss_pred             CCCCCHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCE
Confidence            345567788887764332222322233456777777655    643   3336999999999999999999999   899


Q ss_pred             EEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHH
Q 015729           87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRK  161 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~  161 (401)
                      |+++.|+|+.+.  ..++..|++++.++++.+  +.+|++++++.+.+    +++++++++|+||||.+++   +++|.+
T Consensus       120 vlv~~P~y~~~~--~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~----~~k~i~l~nP~NPTG~~~s~~~~~~l~~  193 (396)
T PRK09147        120 VVCPNPFYQIYE--GAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWA----RTQLLFVCSPGNPTGAVLPLDDWKKLFA  193 (396)
T ss_pred             EEEcCCCccchH--HHHHhcCCEEEEeccCccccCccCHHHHHHHHhh----ccEEEEEcCCCCCcCccCCHHHHHHHHH
Confidence            999999776543  557788999999998654  46899999887763    5799999999999999996   566778


Q ss_pred             HhhhcCCCcEEEEecccccCcce-----ec-c--------CcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCC
Q 015729          162 LLDEYRHPALFLVDGVSSICAID-----FR-M--------DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAK  226 (401)
Q Consensus       162 l~~~~~~~~~li~D~a~~~~~~~-----~~-~--------~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~  226 (401)
                      +|++  ++++||+|++|......     .. .        ......+++.|.+|.++ .+.++|++++++++.+.+....
T Consensus       194 ~a~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~l~~~~~~~~  271 (396)
T PRK09147        194 LSDR--YGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAALLKKFLLYR  271 (396)
T ss_pred             HHHH--cCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecCCHHHHHHHHHHh
Confidence            8888  99999999998753211     00 0        11234589999999762 2345799999998877665321


Q ss_pred             CCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCc
Q 015729          227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD  306 (401)
Q Consensus       227 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~  306 (401)
                      .                  +...+.+.....++.+++.  ....+++.+++++++++.+.+.|.+. +.+..+    ..+
T Consensus       272 ~------------------~~~~~~~~~~q~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~p----~~g  326 (396)
T PRK09147        272 T------------------YHGCAMPPAVQAASIAAWN--DEAHVRENRALYREKFDAVTPILAPV-LDVQLP----DAG  326 (396)
T ss_pred             h------------------hcccCCCHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHHHHHHh-cCCCCC----Cee
Confidence            0                  0111233333333333332  12235667788888888888888774 333322    345


Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--------CCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          307 TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--------VAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       307 ~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~--------~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      .++|+++|  .+..++++.|.++.||.+.+|...        ...+++||++..  +++++++++++|+++++
T Consensus       327 ~f~~~~~~--~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~--~~~~l~~~l~rl~~~~~  395 (396)
T PRK09147        327 FYLWAKVP--GDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA--PLAECVEAAERIVDFCR  395 (396)
T ss_pred             EEEEEECC--CCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHhc
Confidence            78889886  456788888876669999998432        124689998875  68899999999988763

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.97  E-value=2.6e-27  Score=227.10  Aligned_cols=336  Identities=15%  Similarity=0.139  Sum_probs=231.7

Q ss_pred             CCCCCCCcccccCCCcCChHHHHHHHccCcCCC---C-CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            3 YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDY---R-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         3 ~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~---~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      +.+++++.||-.+.+..+-+++.+++.+.....   + .+...+...++++.+++++|.+.   .++.++|++|+..++.
T Consensus        48 ~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~~~---~~~~~sG~~an~~ai~  124 (407)
T PRK09064         48 VTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKEA---ALVFTSGYVSNDATLS  124 (407)
T ss_pred             EEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCCCc---EEEECcHHHHHHHHHH
Confidence            345566667766665555555556555543221   1 12346678899999999998533   5666777888887776


Q ss_pred             ccCC--CCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccch
Q 015729           79 NTLS--PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL  156 (401)
Q Consensus        79 ~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l  156 (401)
                      .+..  +++.|+.....|.+..  ......++++..++.     .|++++++.++....+++++|++++++|++|.+.|+
T Consensus       125 ~l~~~~~~~~i~~~~~~h~s~~--~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l  197 (407)
T PRK09064        125 TLAKLIPDCVIFSDELNHASMI--EGIRRSRCEKHIFRH-----NDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPI  197 (407)
T ss_pred             HHhCCCCCCEEEEeCcchHHHH--HHHHHcCCcEEEECC-----CCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCH
Confidence            5443  6655544444333332  234556777665553     278899988864322367899999999999999999


Q ss_pred             HHHHHHhhhcCCCcEEEEecccccCcc-e-----eccCc--ccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCC
Q 015729          157 SKVRKLLDEYRHPALFLVDGVSSICAI-D-----FRMDE--WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV  228 (401)
Q Consensus       157 ~~i~~l~~~~~~~~~li~D~a~~~~~~-~-----~~~~~--~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~  228 (401)
                      ++|.++|++  +|+++|+|++|+.|.. +     .....  ..+|+++.|.+|.+ |..| |++++++++.+.+..... 
T Consensus       198 ~~i~~l~~~--~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~-g~~G-G~~~~~~~~~~~l~~~~~-  272 (407)
T PRK09064        198 AEICDLADK--YNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAF-GVMG-GYIAGSAALVDAVRSYAP-  272 (407)
T ss_pred             HHHHHHHHH--cCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhh-hccC-ceEecCHHHHHHHHHhCc-
Confidence            999999999  9999999999985432 1     01111  24689999999998 4566 899999888776643211 


Q ss_pred             ccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCcee
Q 015729          229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV  308 (401)
Q Consensus       229 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~  308 (401)
                                     +..+..+.++..++++.++++.+.+.  ...+++..++.+++.+.|+++|+++..+    .+ .+
T Consensus       273 ---------------~~~~t~~~~~~~~~aa~~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~-~i  330 (407)
T PRK09064        273 ---------------GFIFTTSLPPAIAAAALASIRHLKES--NEERERHQERAAKLKAALDAAGIPVMPN----ES-HI  330 (407)
T ss_pred             ---------------cccccCcCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCCCCC----CC-CE
Confidence                           10112234555667777888877654  3456788899999999999988876542    23 35


Q ss_pred             EEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       309 ~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~---~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                      +.+.+++..++.++.+.|+++.||.+.+...+.   ...++||++..++|++|+++++++|+++++++++
T Consensus       331 v~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~~~  400 (407)
T PRK09064        331 VPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARLGL  400 (407)
T ss_pred             EEEEeCCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            556664333466888888765699998764321   2357999999999999999999999999988766

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.97  E-value=1.4e-27  Score=227.01  Aligned_cols=317  Identities=15%  Similarity=0.101  Sum_probs=219.2

Q ss_pred             ChHHHHHHHccCc-CCCCCccHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcCC
Q 015729           20 IPDQVIRAMNRNN-EDYRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIG   93 (401)
Q Consensus        20 ~~~~v~~a~~~~~-~~~~~~~~~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~   93 (401)
                      .++.+++++.... .....|.......++|+.+++++    |.. .++++++|+|+++|+..++.+++++||+|+++.|.
T Consensus        43 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~  122 (384)
T PRK06348         43 TDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPY  122 (384)
T ss_pred             CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCC
Confidence            3455555443311 11222332333456777777776    322 33569999999999999999999999999999998


Q ss_pred             cchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCC
Q 015729           94 QFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRH  168 (401)
Q Consensus        94 ~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~  168 (401)
                      |+.+.  ..++..|++++.++...  ++.+|++++++.+++    +++++++++|+||||.+++   +++|.++|++  +
T Consensus       123 y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~--~  194 (384)
T PRK06348        123 FTPYK--DQIEMVGGKPIILETYEEDGFQINVKKLEALITS----KTKAIILNSPNNPTGAVFSKETLEEIAKIAIE--Y  194 (384)
T ss_pred             CcchH--HHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCc----CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHH--C
Confidence            77654  55677899988888643  346899999998863    5689999999999999997   5667778888  9


Q ss_pred             CcEEEEecccccCcce---e---ccCc-ccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHH
Q 015729          169 PALFLVDGVSSICAID---F---RMDE-WGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF  240 (401)
Q Consensus       169 ~~~li~D~a~~~~~~~---~---~~~~-~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
                      +++||+|++|......   .   .... ....+++.|.+|.++ .+.++|++++++++.+.+....              
T Consensus       195 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~~~~~~~~~~--------------  260 (384)
T PRK06348        195 DLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDYIIETAKIIN--------------  260 (384)
T ss_pred             CeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeeecCHHHHHHHHHHH--------------
Confidence            9999999998743211   0   1111 235688899999985 3445799999988766654321              


Q ss_pred             hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCC-CCC
Q 015729          241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS-HIN  318 (401)
Q Consensus       241 ~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~  318 (401)
                        ..  ...+.+.....++..++... +..+++.++.++++.+.+.+.|+++ ++++..+    ..+.++|+.+|+ +.+
T Consensus       261 --~~--~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p----~gg~~~~~~~~~~~~~  331 (384)
T PRK06348        261 --EG--ICFSAPTISQRAAIYALKHR-DTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPP----KGSIYAFINIKKTGLS  331 (384)
T ss_pred             --Hh--ccCCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHhcCCCceeccC----CeeEEEEEecccCCCC
Confidence              01  01123444334444444321 1124567777888888899999876 5554433    345678888863 567


Q ss_pred             HHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          319 SSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~~~--~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      ..++++.|.+++||.+.+|....  ..+++||++.  .+++++++++++|+++
T Consensus       332 ~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~al~~l~~~  382 (384)
T PRK06348        332 SVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACT--VGIEVLEEAFNRIEKM  382 (384)
T ss_pred             HHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEec--CCHHHHHHHHHHHHhh
Confidence            88999988776799999985422  2468999874  4889999999988653

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.97  E-value=1.3e-27  Score=229.21  Aligned_cols=322  Identities=13%  Similarity=0.061  Sum_probs=225.5

Q ss_pred             CChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhcC-----------CCCceEEecCChhHHHHHHHhccCCCCC
Q 015729           19 HIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKT-----------TSGTPFLIPTTGTGAWESALTNTLSPGD   85 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~-----------~~~~~i~~~~g~t~a~~~~~~~~~~~gd   85 (401)
                      .+++.+.+++.+....  ...|.......++|+.++++++.           -.++++++|+|+++|+..++.+++++||
T Consensus        50 ~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd  129 (412)
T PTZ00433         50 LTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGD  129 (412)
T ss_pred             CCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhcCCCC
Confidence            4677788887764322  22233334567889999988862           1345699999999999999999999999


Q ss_pred             eEEEEcCCcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHH
Q 015729           86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVR  160 (401)
Q Consensus        86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~  160 (401)
                      +|+++.|+|+.+.  ..++..|++++.++.+.  ++.+|++++++.+.+    +++++++++|+||||.+++   +++|.
T Consensus       130 ~vlv~~P~y~~~~--~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~----~~~~i~~~~p~NPtG~~~s~~~~~~l~  203 (412)
T PTZ00433        130 NILVPAPGFPHYE--TVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDD----RTKALIMTNPSNPCGSNFSRKHVEDII  203 (412)
T ss_pred             EEEEccCCcccHH--HHHHHcCCEEEEEecCccccCcCCHHHHHHHhcc----CceEEEEeCCCCCCCcccCHHHHHHHH
Confidence            9999999877653  56788999999999864  357899999998864    5699999999999999987   56678


Q ss_pred             HHhhhcCCCcEEEEecccccCcce-------eccCcccceEEEecCCCccc-CCCcceEEEe-c-----HHHHHHhccCC
Q 015729          161 KLLDEYRHPALFLVDGVSSICAID-------FRMDEWGIDVALTGSQKALS-LPTGMGIVCA-S-----PKALEASKTAK  226 (401)
Q Consensus       161 ~l~~~~~~~~~li~D~a~~~~~~~-------~~~~~~~~di~~~s~~K~l~-g~~g~G~l~~-~-----~~~~~~~~~~~  226 (401)
                      ++|++  +|++||+|+++......       .........+++.|.+|.++ .+.++|++++ +     +++++.+....
T Consensus       204 ~~a~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~  281 (412)
T PTZ00433        204 RLCEE--LRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLG  281 (412)
T ss_pred             HHHHH--cCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHh
Confidence            88888  99999999998643211       01111123578899999883 3445799986 2     34444333210


Q ss_pred             CCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCC
Q 015729          227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFS  305 (401)
Q Consensus       227 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~  305 (401)
                                      ..   .++.+.....++..++..-.+..+++.+++++++++.+.+.|++. |+.+..+    ..
T Consensus       282 ----------------~~---~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p----~g  338 (412)
T PTZ00433        282 ----------------ML---VCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMP----RG  338 (412)
T ss_pred             ----------------hc---cCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCC----Ce
Confidence                            00   112333333333333332112236677888889999999999875 6665443    24


Q ss_pred             ceeEEEEcCC----C-CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          306 DTVTAVIVPS----H-INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       306 ~~~~~~~~~~----~-~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +.++|+++|.    + .+..++.+.|.+++||.+.+|......+++|+++..  .++++++++++|.++++..
T Consensus       339 g~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~l~~al~~l~~~~~~~  409 (412)
T PTZ00433        339 SMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISR--PVEVLREAVERIKAFCERH  409 (412)
T ss_pred             eEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecC--CHHHHHHHHHHHHHHHHHh
Confidence            5678888764    2 256789999886669999998554346799998764  5889999999999988753

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.97  E-value=6e-28  Score=228.36  Aligned_cols=327  Identities=20%  Similarity=0.175  Sum_probs=234.5

Q ss_pred             CCcccccCCCcCChHHHHHHHcc---CcCCCCCccHHHHHHHHHHHHHHHhc------CCCCceEEecCChhHHHHHHHh
Q 015729            8 GKNHLFVPGPVHIPDQVIRAMNR---NNEDYRSPAVPALTKTLLEDIKKIFK------TTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         8 ~~~~~~~~~p~~~~~~v~~a~~~---~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      .+.+.+..+. +.+++++++..+   .......+.......++++.++++++      .+....+++++|+.+++..+..
T Consensus         8 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~   86 (363)
T PF00155_consen    8 SNAPLLLSQN-PPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLR   86 (363)
T ss_dssp             SSSTSSTTSS-HHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHH
T ss_pred             CCCCCCcccc-cchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhh
Confidence            3444444444 455666666654   22223345555677899999999998      4444258888888888887777


Q ss_pred             cc-CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCC--CCCCCChHHHHHHHhccCCC--CceEEEEEecCCCcccc
Q 015729           79 NT-LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAH--TIKAICIVHNETATGVT  153 (401)
Q Consensus        79 ~~-~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~le~~~~~~~~~--~~~~i~~~~~~n~tG~~  153 (401)
                      .+ ..+||+|++++|+|+++.  ..++..|++++.++.+  .++.+|++++++.+++...+  +++++++++|+||||..
T Consensus        87 ~~~~~~~~~vlv~~P~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~  164 (363)
T PF00155_consen   87 LLKINPGDTVLVPDPCYPSYI--EAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSV  164 (363)
T ss_dssp             HHHSSTTSEEEEEESSSTHHH--HHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB
T ss_pred             cccccccccceecCCcccccc--ccccccCceeeeccccccccccccccccccccccccccccccceeeecccccccccc
Confidence            77 789999999999887664  6678899999999864  56678999999999863222  46899999999999999


Q ss_pred             cchHHHHHH---hhhcCCCcEEEEecccccCcce--------eccCcccceEEEecCCCcccCCCc--ceEEEecHHHHH
Q 015729          154 NNLSKVRKL---LDEYRHPALFLVDGVSSICAID--------FRMDEWGIDVALTGSQKALSLPTG--MGIVCASPKALE  220 (401)
Q Consensus       154 ~~l~~i~~l---~~~~~~~~~li~D~a~~~~~~~--------~~~~~~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~  220 (401)
                      ++.+++.++   |++  +|++||+|++|+.+...        ...+.....+++.|.+|.++ .+|  +|++++++++.+
T Consensus       165 ~~~~~l~~l~~~~~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~GlRvG~i~~~~~~~~  241 (363)
T PF00155_consen  165 LSLEELRELAELARE--YNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFG-LPGLRVGYIVAPPELIE  241 (363)
T ss_dssp             --HHHHHHHHHHHHH--TTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTT-SGGGTEEEEEEEHHHHH
T ss_pred             cccccccchhhhhcc--cccceeeeeceeccccCCCccCcccccccccccceeeeecccccc-ccccccccccchhhhhh
Confidence            986665555   999  99999999999865433        11122223689999999984 444  699999998877


Q ss_pred             HhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHH--hcHHHHHHHHHHHHHHHHHHHHHcCCcccc
Q 015729          221 ASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFE--EGLENVIERHRRLGKATRLAVEAWGLKNCT  298 (401)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~--~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~  298 (401)
                      .+...               ...+.     .+......+.+++.....  ..+++.+++++++.+.+.+.|++.|+.+..
T Consensus       242 ~l~~~---------------~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~  301 (363)
T PF00155_consen  242 RLRRF---------------QRSGL-----SSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEIGITVLP  301 (363)
T ss_dssp             HHHHH---------------HHHTT-----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEH
T ss_pred             hhhhc---------------ccccc-----ccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHhhhheee
Confidence            66532               11111     233333333444433322  146788999999999999999998888776


Q ss_pred             CCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHH
Q 015729          299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGV  366 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i  366 (401)
                      +    ..+.++++.++.. +..++.+.|.+++||.+.+|..+...+++|+++ +..+++++++++++|
T Consensus       302 ~----~~~~~~~~~~~~~-~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  302 P----EAGFFLWVRLDPN-DAEELAQELLEEYGILVRPGSYFGVPGYIRISL-ASHSEEDLEEALERL  363 (363)
T ss_dssp             H----SBSSEEEEEESHH-HHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred             c----cCccEEEEEcccc-hHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe-ccCCHHHHHHHHhhC
Confidence            4    2556777777432 567999999987799999986654578999988 778999999999986

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.97  E-value=1.2e-27  Score=224.64  Aligned_cols=319  Identities=15%  Similarity=0.134  Sum_probs=228.2

Q ss_pred             CCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCC----------
Q 015729           16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGD----------   85 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd----------   85 (401)
                      |-+.++++|++++.+....+  ....+...++++.+++++|.+.   +++++|+|+|+.+++.+++++||          
T Consensus        21 g~s~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~a~~~g~~~---~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s   95 (363)
T TIGR01437        21 GVSTVSDEVADAQKRGAQNY--FEIKELVNKTGEYIANLLGVED---AVIVSSASAGIAQSVAAVITRGNRYLVENLHDS   95 (363)
T ss_pred             CCCCCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHhhCCCe---EEEEcCHHHHHHHHHHHHhcCCCcchhhccccc
Confidence            45568999999999865443  2456889999999999999864   78999999999999999899988          


Q ss_pred             -----eEEEEcCCcchH--HHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEE-EEecCCCcccccchH
Q 015729           86 -----RIISFLIGQFSL--LWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAIC-IVHNETATGVTNNLS  157 (401)
Q Consensus        86 -----~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~-~~~~~n~tG~~~~l~  157 (401)
                           +|+++.+.++.+  .+.......|+++++++.+  +.+|++++++++++    ++++++ +++++|++|.+.|++
T Consensus        96 ~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~--~~~d~~~le~ai~~----~t~ai~~v~~~~~~~g~~~~~~  169 (363)
T TIGR01437        96 KIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYA--NECSAEQLEAAITE----KTAAILYIKSHHCVQKSMLSVE  169 (363)
T ss_pred             ccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCC--CCCCHHHHHHhcCh----hceEEEEEecCCCCcCCcCCHH
Confidence                 888877533322  1345667789999998863  46899999999984    557665 556789999999999


Q ss_pred             HHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHH
Q 015729          158 KVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDY  237 (401)
Q Consensus       158 ~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  237 (401)
                      +|.++|++  +|+++|+|++|+...  ......++|++++|+||++.|+. .|+++.+++.++.+...... ..      
T Consensus       170 ~i~~~a~~--~gi~vivD~a~~~~~--~~~~~~g~D~~~~S~~K~l~gp~-~G~l~~~~~~i~~~~~~~~~-~~------  237 (363)
T TIGR01437       170 DAAQVAQE--HNLPLIVDAAAEEDL--QKYYRLGADLVIYSGAKAIEGPT-SGLVLGKKKYIEWVKLQSKG-IG------  237 (363)
T ss_pred             HHHHHHHH--cCCeEEEECCCCCch--HHHHHcCCCEEEEeCCcccCCCc-eEEEEEcHHHHHHHHhccCC-Cc------
Confidence            99999999  999999999997321  11224578999999999998777 69999888887765432110 00      


Q ss_pred             HHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCcc-CC--ceeEEEEc
Q 015729          238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEW-FS--DTVTAVIV  313 (401)
Q Consensus       238 ~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~--~~~~~~~~  313 (401)
                       ..++.+        ...++++.++++.+.+.+.+. .++..++.+.+++.|.++ |+.+....+.. ..  ...+.+..
T Consensus       238 -~~~~~~--------~~~~~gl~aAl~~~~~~~~~~-~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~  307 (363)
T TIGR01437       238 -RAMKVG--------KENILGLTAALEQYLSTGKES-GAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDE  307 (363)
T ss_pred             -ceeccC--------HHHHHHHHHHHHHHHccCccc-HHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEec
Confidence             111112        134678888998887655333 334445677899999987 88776422111 11  12233332


Q ss_pred             C-CCCCHHHHHHHHHhh-CCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          314 P-SHINSSEIVRRAWQR-YNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       314 ~-~~~~~~~l~~~L~~~-~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      . .+.+..++.+.|.++ .+|.+++.  ....+.+|+++.. ++++|++.++++|++++
T Consensus       308 ~~~g~~~~~l~~~L~~~~~~I~~r~~--~~~~~~~~l~~~~-~~~~e~~~~~~~l~~~~  363 (363)
T TIGR01437       308 SELGMTAADVVQALRQGEPAIYTRGY--KANEGIIEIDPRS-VTGGQLDIIVERIREIV  363 (363)
T ss_pred             cCCCCCHHHHHHHHhcCCCCEEEeee--eecCCeEEEEeec-CCHHHHHHHHHHHHHhC
Confidence            1 367889999999764 23776652  2235578887665 77999999999998763

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=1.4e-27  Score=225.97  Aligned_cols=313  Identities=15%  Similarity=0.109  Sum_probs=221.9

Q ss_pred             CcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcch
Q 015729           17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFS   96 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~   96 (401)
                      |...++.+.+++.+.......+..... .++++.+++++|.++ +++++++|+++++..++.+++++||+|++..|+|+.
T Consensus        47 ~~~~~~~~~~al~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~-~~i~~t~G~~~~l~~~~~~~~~~gd~vli~~P~y~~  124 (371)
T PRK05166         47 PLGPSPAVRRAFADIAELLRLYPDPQG-RALREAIAARTGVPA-DRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPL  124 (371)
T ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCCcH-HHHHHHHHHHhCcCH-HHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHH
Confidence            456677888888763222112222222 389999999999865 459999999999999988889999999999997665


Q ss_pred             HHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEec
Q 015729           97 LLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDG  176 (401)
Q Consensus        97 ~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~  176 (401)
                      ..  ..++..|++++.++.+.++.+|++++++.+++    +++++++++++||||.+++.+++.++++....+++||+|+
T Consensus       125 ~~--~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~----~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De  198 (371)
T PRK05166        125 HE--DYPTMMGARVERVTVTPDLGFDLDALCAAVAR----APRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDE  198 (371)
T ss_pred             HH--HHHHHcCCeEEEeecCCCCCCCHHHHHHhhhc----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEEC
Confidence            43  56788899999999987778999999998874    5689999999999999999988888887644588999999


Q ss_pred             ccccCcce------ec-cCc-ccceEEEecCCCccc-CCCcceEEEe-cHHHHHHhccCCCCccccchHHHHHHhhcCCC
Q 015729          177 VSSICAID------FR-MDE-WGIDVALTGSQKALS-LPTGMGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTF  246 (401)
Q Consensus       177 a~~~~~~~------~~-~~~-~~~di~~~s~~K~l~-g~~g~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  246 (401)
                      ++......      .. ... ....+++.|.+|.++ .+.++|++++ ++++.+.+.....                   
T Consensus       199 ~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~-------------------  259 (371)
T PRK05166        199 AYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRT-------------------  259 (371)
T ss_pred             cHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhcc-------------------
Confidence            98643310      01 111 123588899999985 4445799776 5666665543210                   


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHH
Q 015729          247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRA  326 (401)
Q Consensus       247 ~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  326 (401)
                       .++.+.....++.+++.  ....+++.++.++++++.+.+.|++.|+.+...     .+.++|+.++  .+..++.+.|
T Consensus       260 -~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~p~-----~g~fl~~~~~--~~~~~l~~~l  329 (371)
T PRK05166        260 -PFNVNGAAQAAALAALD--DEEHLAKGVALALAERERLKKELAEMGYRIAPS-----RANFLFFDAR--RPASAVAEAL  329 (371)
T ss_pred             -CCCCCHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHCcCeeCCC-----cCCEEEEeCC--CCHHHHHHHH
Confidence             11233332223333332  122366677888888899999999887764321     2346777764  2577899999


Q ss_pred             HhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          327 WQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       327 ~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      .++ ||.+.++......+++||++.   +.++.++++++|+.++
T Consensus       330 ~~~-gi~v~p~~~~~~~~~iRi~~~---~~~~~~~l~~~l~~i~  369 (371)
T PRK05166        330 LRQ-GVIVKPWKQPGFETFIRVSIG---SPEENDHFVAALDKVL  369 (371)
T ss_pred             HHC-CeEEecCCCCCCCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence            876 999999865444678999765   4677788888887654

>PRK07683 aminotransferase A; Validated

Probab=99.97  E-value=2.1e-27  Score=225.97  Aligned_cols=320  Identities=14%  Similarity=0.100  Sum_probs=221.8

Q ss_pred             ChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHhc----C--CCCceEEecCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           20 IPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFK----T--TSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~g----~--~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      .++.+.+++.+.... ...+.......++|+.++++++    .  +++.++++++|+++|+..++.+++++||+|+++.+
T Consensus        42 ~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p  121 (387)
T PRK07683         42 TPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAP  121 (387)
T ss_pred             CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcCC
Confidence            345666666663322 1223223445677778877763    3  23325999999999999999888999999999999


Q ss_pred             CcchHHHHHHHHHcCCcEEEEeCCCC-CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCC
Q 015729           93 GQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRH  168 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~  168 (401)
                      .|+.+.  ..++..|++++.++.+.+ ..+|.+++++.+.+    +++++++++++||||.+++   +++|.++|++  +
T Consensus       122 ~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~--~  193 (387)
T PRK07683        122 IYPGYE--PIIRLCGAKPVFIDTRSTGFRLTAEALENAITE----KTRCVVLPYPSNPTGVTLSKEELQDIADVLKD--K  193 (387)
T ss_pred             CccchH--HHHHHcCCEEEEeecCcccCCCCHHHHHHhcCc----CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHH--c
Confidence            766543  456778999999998653 45688899998863    5689999999999999987   6778888888  9


Q ss_pred             CcEEEEecccccCcce------ecc-CcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHH
Q 015729          169 PALFLVDGVSSICAID------FRM-DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF  240 (401)
Q Consensus       169 ~~~li~D~a~~~~~~~------~~~-~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
                      |++||+|+++......      ... +..+..+++.|.+|.++ .+.++|++++++++.+++....             .
T Consensus       194 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~~l~~~~~~~~-------------~  260 (387)
T PRK07683        194 NIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSYLAKHILKVH-------------Q  260 (387)
T ss_pred             CeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEEEcCHHHHHHHHHHH-------------H
Confidence            9999999998754211      111 11234688999999985 3345799999998877665321             0


Q ss_pred             hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC-CCCH
Q 015729          241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS-HINS  319 (401)
Q Consensus       241 ~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~  319 (401)
                      +.     ...++.....++...++.- ...+++.++++.++++.+.+.|.+.|+.+..+    ..+.+++..++. +.+.
T Consensus       261 ~~-----~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~  330 (387)
T PRK07683        261 YN-----VTCASSISQYAALEALTAG-KDDAKMMRHQYKKRRDYVYNRLISMGLDVEKP----TGAFYLFPSIGHFTMSS  330 (387)
T ss_pred             hc-----cCCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC----CeeEEEEEecccCCCCH
Confidence            10     0112232222333333211 11255677788888999999998877665543    234567777754 4567


Q ss_pred             HHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          320 SEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       320 ~~l~~~L~~~~~i~v~~g~~--~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .+++..|.++.||.+.+|..  ...++++||++..  +++++++++++|.+++++
T Consensus       331 ~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~--~~~~~~~al~~l~~~l~~  383 (387)
T PRK07683        331 FDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAY--SIETLKEGLDRLEAFLQQ  383 (387)
T ss_pred             HHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence            78887766666999999853  2235789998764  789999999999998864

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.97  E-value=1.9e-27  Score=228.69  Aligned_cols=332  Identities=16%  Similarity=0.143  Sum_probs=232.0

Q ss_pred             CCcccccCCCcCChHHHHHHHccCcCCCC-----------CccHHHHHHH-HHHHHHHHhcCCCCceEEecCChhHHHHH
Q 015729            8 GKNHLFVPGPVHIPDQVIRAMNRNNEDYR-----------SPAVPALTKT-LLEDIKKIFKTTSGTPFLIPTTGTGAWES   75 (401)
Q Consensus         8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~~-----------~~~~~~~~~~-l~~~la~~~g~~~~~~i~~~~g~t~a~~~   75 (401)
                      .+.+++.+++.++++.|++++.......+           +....+..++ +++.+++++|.+... +++ ++||+|+..
T Consensus        25 ~~~~~l~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~-i~~-~sgt~al~~  102 (416)
T PRK00011         25 EEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYAN-VQP-HSGSQANAA  102 (416)
T ss_pred             hcCeeeecccCcCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCcee-eec-CCchHHHHH
Confidence            35677888888899999999976432111           1112223333 566899999997643 444 567899999


Q ss_pred             HHhccCCCCCeEEEEcCCcchHH--H-HHHHHHcCCcEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcc
Q 015729           76 ALTNTLSPGDRIISFLIGQFSLL--W-IDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATG  151 (401)
Q Consensus        76 ~~~~~~~~gd~vl~~~~~~~~~~--~-~~~~~~~g~~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG  151 (401)
                      ++.+++++||+|+++.+.|.++.  + .......|++++.++.+. ++.+|++++++.+++   +++++++++++  .+|
T Consensus       103 ~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~---~~~k~v~~~~~--~~~  177 (416)
T PRK00011        103 VYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALE---HKPKLIIAGAS--AYS  177 (416)
T ss_pred             HHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHh---cCCCEEEECCC--cCC
Confidence            99899999999999999876542  1 111234567888888764 467899999999974   25688887643  356


Q ss_pred             cccchHHHHHHhhhcCCCcEEEEecccccCcc-----eeccCcccceEEEecCCCcccCCCcceEEEec-HHHHHHhccC
Q 015729          152 VTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCAS-PKALEASKTA  225 (401)
Q Consensus       152 ~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~-~~~~~~~~~~  225 (401)
                      ...|+++|.++|++  +|+++|+|++|+.|..     +....  ++|++++|+||++.|+.| |+++.+ +++.+++...
T Consensus       178 ~~~~~~~I~~la~~--~~~~livD~a~~~g~~~~g~~~~~~~--~~di~~~S~~K~l~g~~g-g~i~~~~~~~~~~l~~~  252 (416)
T PRK00011        178 RPIDFKRFREIADE--VGAYLMVDMAHIAGLVAAGVHPSPVP--HADVVTTTTHKTLRGPRG-GLILTNDEELAKKINSA  252 (416)
T ss_pred             CccCHHHHHHHHHH--cCCEEEEECcchhcccccCccCCCCC--CCcEEEecCCcCCCCCCc-eEEEeCCHHHHHHHHHH
Confidence            67799999999999  9999999999976643     22233  689999999999976665 777775 6777666432


Q ss_pred             CCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCC
Q 015729          226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS  305 (401)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  305 (401)
                      ...               +  ..+++....++++..++......++++..++..++++++++.|+++|+++.. ..  ..
T Consensus       253 ~~~---------------~--~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~--~~  312 (416)
T PRK00011        253 VFP---------------G--IQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERGFRVVS-GG--TD  312 (416)
T ss_pred             hCc---------------c--ccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeeee-cC--CC
Confidence            110               1  1223444455555555555545567888999999999999999998887653 11  12


Q ss_pred             ceeEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCC------CCCcEEEEeecc----cCCHHHHHHHHHHHHHHHHh
Q 015729          306 DTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNK------VAGKVFRIGHLG----HLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       306 ~~~~~~~~~~-~~~~~~l~~~L~~~~~i~v~~g~~~------~~~~~~Ri~~~~----~~~~~di~~~~~~i~~~l~~  372 (401)
                      ..++++.+++ +.+..++.+.|.++ ||.+..++.+      .....+|++...    .++++|+++++++|+++++.
T Consensus       313 ~~~~~i~~~~~~~~~~~~~~~L~~~-GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~  389 (416)
T PRK00011        313 NHLVLVDLRSKGLTGKEAEAALEEA-NITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN  389 (416)
T ss_pred             CeEEEEeCcccCCCHHHHHHHHHHc-CcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence            3567777742 34667888888655 9998754322      123469996533    46799999999999998874

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.97  E-value=1.3e-27  Score=228.06  Aligned_cols=316  Identities=12%  Similarity=0.024  Sum_probs=220.2

Q ss_pred             CcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHh----c----CCCCceEEecCChhHHHHHHHhccCCCCCe--
Q 015729           17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF----K----TTSGTPFLIPTTGTGAWESALTNTLSPGDR--   86 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~----g----~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~--   86 (401)
                      +..+++.+.+++.+.......+.......++|+.+++++    |    .++.+++++|+|+++|+..++.+++++||+  
T Consensus        39 ~~~~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~  118 (393)
T TIGR03538        39 KHPTPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPL  118 (393)
T ss_pred             CCCCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCcce
Confidence            445678888888875433223333344567788887777    3    333345999999999999999999999986  


Q ss_pred             EEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHH
Q 015729           87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRK  161 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~  161 (401)
                      |+++.|.|+.+.  ..++..|++++.++++++  +.+|++++++++.+    +++++++++|+||||.+++   +++|.+
T Consensus       119 vlv~~P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~----~~k~i~l~~p~NPtG~~~s~~~~~~l~~  192 (393)
T TIGR03538       119 VVMPNPFYQIYE--GAALLAGAEPYFLNCTAENGFLPDFDAVPESVWR----RCQLLFVCSPGNPTGAVLSLDTLKKLIE  192 (393)
T ss_pred             EEecCCCCcchH--HHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhh----cceEEEEeCCCCCcCcccCHHHHHHHHH
Confidence            888888766543  457889999999998644  46789999988863    5699999999999999998   566788


Q ss_pred             HhhhcCCCcEEEEecccccCcce-----ec----cC-----cccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCC
Q 015729          162 LLDEYRHPALFLVDGVSSICAID-----FR----MD-----EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAK  226 (401)
Q Consensus       162 l~~~~~~~~~li~D~a~~~~~~~-----~~----~~-----~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~  226 (401)
                      +|++  +|++||+|++|......     ..    ..     .....+++.|.+|.++ .+.++|+++.++++++++....
T Consensus       193 ~a~~--~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~l~~~~~~~~  270 (393)
T TIGR03538       193 LADQ--YGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEILKAFLRYR  270 (393)
T ss_pred             HHHH--CCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecCHHHHHHHHHHH
Confidence            8888  99999999998643211     00    00     1223588999999652 3445799999988877664321


Q ss_pred             CCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCc
Q 015729          227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD  306 (401)
Q Consensus       227 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~  306 (401)
                      .                  +...+.+.....++.+++.  ....+++.+++++++.+.+.+.|++. +.+..+    ..+
T Consensus       271 ~------------------~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~p----~gg  325 (393)
T TIGR03538       271 T------------------YHGCAMPIPTQLASIAAWN--DEQHVRENRALYREKFAAVLEILGQV-LDLELP----DAG  325 (393)
T ss_pred             H------------------hhccCcCHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHhh-CcccCC----Cee
Confidence            0                  0011233333333333332  12236677788888888888888774 333222    345


Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC--------CCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          307 TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV--------AGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       307 ~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~--------~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      .++|+++|  .+..++++.|.+++||.+.+|....        ..+++||++..  +++++++++++|++.
T Consensus       326 ~f~~~~~~--~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~  392 (393)
T TIGR03538       326 FYLWPKVP--GDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA--PLEECVEAAERIRSF  392 (393)
T ss_pred             EEEEEECC--CCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC--CHHHHHHHHHHHHHh
Confidence            68889886  3567888888766799999995321        23689998876  789999999999764

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK09148 aminotransferase; Validated

Probab=99.97  E-value=1e-27  Score=229.16  Aligned_cols=327  Identities=13%  Similarity=0.105  Sum_probs=223.9

Q ss_pred             CChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHh----cCC--CCceEEecCChhHHHHHHHhccCCCCCeEEEE
Q 015729           19 HIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIF----KTT--SGTPFLIPTTGTGAWESALTNTLSPGDRIISF   90 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~----g~~--~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   90 (401)
                      ++++.+++++.+....  ...|.......++|+.+++++    |.+  +++++++|+|+++|+..++..++.+||+|+++
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~  122 (405)
T PRK09148         43 PTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCP  122 (405)
T ss_pred             CCCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhcCCCCEEEEc
Confidence            4466677776653211  112332344567788888776    432  33259999999999999999999999999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccch---HHHHHHhhhcC
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLLDEYR  167 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l---~~i~~l~~~~~  167 (401)
                      +|+|+.+.  ..++..|++++.++.+.++. +++.+++.++... .+++++++++|+||||.+++.   ++|.++|++  
T Consensus       123 ~P~y~~~~--~~~~~~g~~v~~v~~~~~~~-~~~~l~~~~~~~~-~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~--  196 (405)
T PRK09148        123 NPSYPIHA--FGFIMAGGVIRSVPAEPDEE-FFPALERAVRHSI-PKPIALIVNYPSNPTAYVADLDFYKDVVAFAKK--  196 (405)
T ss_pred             CCCCcccH--HHHHhcCCEEEEEeCCCCCC-CccCHHHHHhhcc-ccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHH--
Confidence            99877654  44567899999999876543 3556666665322 467999999999999999986   567888888  


Q ss_pred             CCcEEEEecccccCcc---e----eccCc-ccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHH
Q 015729          168 HPALFLVDGVSSICAI---D----FRMDE-WGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYI  238 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~---~----~~~~~-~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (401)
                      +|++||+|++|.....   +    ..... .+..+++.|.+|.++ .+.++|+++.++++++.+...+.           
T Consensus       197 ~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~~~~~i~~l~~~~~-----------  265 (405)
T PRK09148        197 HDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGNERLIAALTRVKS-----------  265 (405)
T ss_pred             cCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeCCHHHHHHHHHHHH-----------
Confidence            9999999999874321   1    11111 134567899999984 23447999999988776653210           


Q ss_pred             HHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCC--
Q 015729          239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH--  316 (401)
Q Consensus       239 ~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~--  316 (401)
                             +...+++.....++..+++. .+..+++.++++.++++.+.+.|++.|+.+..+    ..+.++|+.+|..  
T Consensus       266 -------~~~~~~~~~~q~~~~~~L~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p----~~g~f~~~~l~~~~~  333 (405)
T PRK09148        266 -------YLDYGAFTPIQVAATAALNG-PQDCIAEMRELYKKRRDVLVESFGRAGWDIPPP----AASMFAWAPIPEAFR  333 (405)
T ss_pred             -------HhccCCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC----CeeEEEEEECCCccC
Confidence                   00112333222333333321 122356778888999999999999887665433    3456788888753  


Q ss_pred             -CCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCCC
Q 015729          317 -INSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYP  376 (401)
Q Consensus       317 -~~~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~~  376 (401)
                       .+..+++..|.++.||.+.+|...  ...+++||++.  .+.+++++++++|.+.+++++..
T Consensus       334 ~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~--~~~~~l~~al~~l~~~l~~~~~~  394 (405)
T PRK09148        334 HLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV--ENEQRIRQAARNIKRFLSSADET  394 (405)
T ss_pred             CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHHHHH
Confidence             245688888776569999998432  22478999875  47899999999999998766543

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.97  E-value=1.8e-27  Score=234.00  Aligned_cols=323  Identities=13%  Similarity=0.063  Sum_probs=218.5

Q ss_pred             CChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHh------cCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF------KTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      +.++.+++++.+.......|.......++|+.|++++      +.++ ++|++++|+++++..++.+++++||+|++++|
T Consensus       162 ~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~-~~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P  240 (517)
T PRK13355        162 RTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDV-DDIYTGNGVSELINLSMSALLDDGDEVLIPSP  240 (517)
T ss_pred             CCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCCh-hHEEEeCcHHHHHHHHHHHhCCCCCEEEEcCC
Confidence            4477888888764433333444456789999999988      3443 45999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcC
Q 015729           93 GQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR  167 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~  167 (401)
                      +|+.+.  ..++..|++++.++++++  +.+|+++++++++.    +++++++++|+||||.+++   +++|+++|++  
T Consensus       241 ~y~~y~--~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~----~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~--  312 (517)
T PRK13355        241 DYPLWT--ACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITS----RTKAIVIINPNNPTGALYPREVLQQIVDIARE--  312 (517)
T ss_pred             CCcCHH--HHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCc----CceEEEEECCCCCCCcCcCHHHHHHHHHHHHH--
Confidence            877654  567788999999988653  57899999998863    6799999999999999998   6778889999  


Q ss_pred             CCcEEEEecccccCcce----eccCcc--c-ceEEEecCCCccc-CCCcceEEEec--HHHHHHhccCCCCccccchHHH
Q 015729          168 HPALFLVDGVSSICAID----FRMDEW--G-IDVALTGSQKALS-LPTGMGIVCAS--PKALEASKTAKSVRVFFDWKDY  237 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~~----~~~~~~--~-~di~~~s~~K~l~-g~~g~G~l~~~--~~~~~~~~~~~~~~~~~~~~~~  237 (401)
                      +|++||+|++|......    ......  + ..+++.|.+|.++ ++..+||++.+  ++..+.+...            
T Consensus       313 ~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~------------  380 (517)
T PRK13355        313 HQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEG------------  380 (517)
T ss_pred             cCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccceEEEEeeCchhhHHHHHHH------------
Confidence            99999999998643211    111111  1 2345688999873 23347999854  4332211100            


Q ss_pred             HHHhhcCCCCCCCCcHHHHHHHHHHHHHHH--HhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcC
Q 015729          238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIF--EEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVP  314 (401)
Q Consensus       238 ~~~~~~g~~~~~~~~~~~~~a~~~al~~~~--~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~  314 (401)
                      ......-   ..+.+.....++.+++....  ...++. ..+..+.++++.+.|+++ |+++..++    .+.+++++++
T Consensus       381 l~~~~~~---~~~~~~~~q~a~~~aL~~~~~~~~~~~~-~~~~~~~r~~l~~~L~~~~g~~~~~p~----g~fy~~~~l~  452 (517)
T PRK13355        381 LNMLANM---RLCSNVPAQSIVQTALGGHQSVKDYLVP-GGRVYEQRELVYNALNAIPGISAVKPK----AAFYIFPKID  452 (517)
T ss_pred             HHHHhcC---cCCcChHHHHHHHHHhcCCccHHHHHHH-HHHHHHHHHHHHHHHhcCCCcccCCCC----eeeEEEeecC
Confidence            0000000   11233333344455553110  111222 234455678888999887 87766543    4456777775


Q ss_pred             CC----CCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          315 SH----INSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       315 ~~----~~~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .+    .+..+++..++++.||.+.+|...  ...+++||++.  .+++++++++++|.+.++.
T Consensus       453 ~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~--~~~~~l~~a~~rl~~~~~~  514 (517)
T PRK13355        453 VKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYL--PRLEDLEDAMDRLADFFSY  514 (517)
T ss_pred             cccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence            32    135566666555669999998543  24578999884  4899999999999998864

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.96  E-value=5.3e-27  Score=224.33  Aligned_cols=323  Identities=15%  Similarity=0.111  Sum_probs=221.2

Q ss_pred             ChHHHHHHHccCcC--CCCCccHHHHHHHHHHHHHHHh----cCC-CCc-eEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           20 IPDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIF----KTT-SGT-PFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        20 ~~~~v~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~----g~~-~~~-~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      .++.+++++.+...  ....+.......++|+.+++++    |.+ .++ ++++|+|+++|+..++.+++.+||+|++++
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~  126 (403)
T PRK08636         47 TPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPD  126 (403)
T ss_pred             CCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcC
Confidence            34555665554222  1223333344557777777776    543 333 599999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCC--CCCCCChHH----HHHHHhccCCCCceEEEEEecCCCcccccch---HHHHHH
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDV----LASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKL  162 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~----le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l---~~i~~l  162 (401)
                      |+|+.+.  ..++..|++++.++.+  .++.+|++.    +++++++.. .+++++++++|+||||.+++.   ++|.++
T Consensus       127 P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~-~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~  203 (403)
T PRK08636        127 PAYPIHS--QAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESS-PKPKYVVVNFPHNPTTATVEKSFYERLVAL  203 (403)
T ss_pred             CCCcchH--HHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhcc-CCceEEEEeCCCCCCCccCCHHHHHHHHHH
Confidence            9877654  4577789999999875  335788774    466565432 468999999999999999985   567888


Q ss_pred             hhhcCCCcEEEEecccccCcce-------eccCcc-cceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccc
Q 015729          163 LDEYRHPALFLVDGVSSICAID-------FRMDEW-GIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFD  233 (401)
Q Consensus       163 ~~~~~~~~~li~D~a~~~~~~~-------~~~~~~-~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~  233 (401)
                      |++  ++++||+|+++......       ...+.. ...+++.|.+|.++ .+.++|+++.++++.+.+.....      
T Consensus       204 a~~--~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~~~li~~~~~~~~------  275 (403)
T PRK08636        204 AKK--ERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGNKKLVGALKKIKS------  275 (403)
T ss_pred             HHH--cCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccceeeeeeCCHHHHHHHHHHHH------
Confidence            888  99999999998743211       111111 23466789999993 44567999999998776653210      


Q ss_pred             hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEc
Q 015729          234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV  313 (401)
Q Consensus       234 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~  313 (401)
                            ....+     ++++... ++..+++.. ...+++.++.+.++++.+.+.|++.|+++..+    ..+.++|+.+
T Consensus       276 ------~~~~~-----~~~~~q~-~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p----~~g~~~~~~l  338 (403)
T PRK08636        276 ------WLDYG-----MFTPIQV-AATIALDGD-QSCVEEIRETYRKRRDVLIESFANAGWELQKP----RASMFVWAKI  338 (403)
T ss_pred             ------Hhccc-----CChHHHH-HHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC----CcceEEEEEC
Confidence                  00011     1233222 222333211 22356677888888899999998877665443    3456888998


Q ss_pred             CCC---CCHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          314 PSH---INSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       314 ~~~---~~~~~l~~~L~~~~~i~v~~g~~--~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      |+.   .+..++...+.+++||.+.+|..  ...++++||++.  .+++++++++++|++.++.
T Consensus       339 ~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~~~rl~~~l~~  400 (403)
T PRK08636        339 PEPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI--ENENRIRQAARNIKKFLKE  400 (403)
T ss_pred             CCccCCCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence            753   34678888776666999999843  223578999875  4899999999999999865

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.96  E-value=4.2e-28  Score=217.32  Aligned_cols=299  Identities=17%  Similarity=0.145  Sum_probs=213.9

Q ss_pred             CCccHHHHHHHHHHHHHHHhcCC--CCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEE
Q 015729           36 RSPAVPALTKTLLEDIKKIFKTT--SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVV  113 (401)
Q Consensus        36 ~~~~~~~~~~~l~~~la~~~g~~--~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v  113 (401)
                      ++++..++...|++++++++|..  +.++|++|.|+.+|+..++++++++||+|++.+|-+.++.  ......|.+.+.|
T Consensus        67 ~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~--~~~~maG~tpv~v  144 (420)
T KOG0257|consen   67 RGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYI--PQVVMAGGTPVFV  144 (420)
T ss_pred             ccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhh--hHHhhcCCcceee
Confidence            46778889999999999988864  4456999999999999999999999999999999666554  5577789999999


Q ss_pred             eCC--------CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEEEEecccccCc
Q 015729          114 ESD--------WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICA  182 (401)
Q Consensus       114 ~~~--------~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~~~  182 (401)
                      +..        .++.+|++++|.++.    +|+|+|+++.||||||.+.+   +++|+++|++  ||+++|.|++|....
T Consensus       145 ~~~~~~g~~~s~~~~~D~~~le~~~t----~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k--~~~lvisDevYe~~v  218 (420)
T KOG0257|consen  145 PLKPKEGNVSSSDWTLDPEELESKIT----EKTKAIILNTPHNPTGKVFSREELERIAELCKK--HGLLVISDEVYEWLV  218 (420)
T ss_pred             ccccccccccCccccCChHHHHhhcc----CCccEEEEeCCCCCcCcccCHHHHHHHHHHHHH--CCEEEEEhhHhHHHh
Confidence            876        356789999999998    47799999999999999986   7889999999  999999999986432


Q ss_pred             ce--------eccCcccceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCc
Q 015729          183 ID--------FRMDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPS  252 (401)
Q Consensus       183 ~~--------~~~~~~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  252 (401)
                      ..        ....-+...+.++|.+|++ +..|  +||++..+.++..+.+...            ++      ..+.+
T Consensus       219 ~d~~~h~r~aslPgm~ertitvgS~gKtf-~~TGWrlGW~igp~~L~~~~~~vh~------------~~------~~~~~  279 (420)
T KOG0257|consen  219 YDGNKHIRIASLPGMYERTITVGSFGKTF-GVTGWRLGWAIGPKHLYSALFPVHQ------------NF------VFTCP  279 (420)
T ss_pred             hCCCcceeeecCCchhheEEEecccccee-eeeeeeeeeeechHHhhhhHHHHhh------------cc------ccccC
Confidence            11        1122344678899999998 4665  7999996666554443211            11      11122


Q ss_pred             HHHHHHHHHHHHHHH----Hhc---HHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcC--------CC-
Q 015729          253 IQLLYGLRAALDLIF----EEG---LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVP--------SH-  316 (401)
Q Consensus       253 ~~~~~a~~~al~~~~----~~g---~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~--------~~-  316 (401)
                      .....|..+|+..-.    .+|   .....+.++++++.+.+.|.++|+++..+++.    .+++..++        .+ 
T Consensus       280 Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~lg~~v~~p~ga----yyl~adfs~~~~~~~~~~~  355 (420)
T KOG0257|consen  280 TPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEELGLKVTGPEGA----YYLWADFSLAKSWPFFEEI  355 (420)
T ss_pred             cHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCc----eEEEEeccccccCCcchhh
Confidence            211222333332211    122   34478889999999999999999999887533    45666664        11 


Q ss_pred             ---CCHHHHHHHHHhhCCeEEccCCCCCC-------CcEEEEeecccCCHHHHHHHHHHHH
Q 015729          317 ---INSSEIVRRAWQRYNLSLGLGLNKVA-------GKVFRIGHLGHLNELQLLGCLAGVE  367 (401)
Q Consensus       317 ---~~~~~l~~~L~~~~~i~v~~g~~~~~-------~~~~Ri~~~~~~~~~di~~~~~~i~  367 (401)
                         .+...++++|.++.|+.+.|+.....       ++.+|++++-  +++-++.++++++
T Consensus       356 ~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k--~~~~L~~a~e~l~  414 (420)
T KOG0257|consen  356 LEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFCK--ADETLRKAIERLK  414 (420)
T ss_pred             ccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHHh--hHHHHHHHHHHHh
Confidence               13446778888777888777744222       2345664443  5666666666665

>PLN02187 rooty/superroot1

Probab=99.96  E-value=2.8e-27  Score=228.67  Aligned_cols=328  Identities=12%  Similarity=0.016  Sum_probs=222.1

Q ss_pred             CChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhcC----C-CCceEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           19 HIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKT----T-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~----~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      ..++.+.+++.+....  ...+.......++|+.++++++.    + .++++++|+|+++|+..++.++++|||+|++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~  162 (462)
T PLN02187         83 RTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPR  162 (462)
T ss_pred             CCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhcCCCCEEEEeC
Confidence            4455666665553221  12233344567889999988852    1 345699999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCC--CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhc
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY  166 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~  166 (401)
                      |+|+.+.  ..++..|++++.+++.  .++.+|++++++++++    +++++++++|+||||.+++   +++|.++|++ 
T Consensus       163 P~y~~y~--~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~----~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~-  235 (462)
T PLN02187        163 PGFPHYD--ARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADE----NTVAMVVINPNNPCGNVYSHDHLKKVAETARK-  235 (462)
T ss_pred             CCCccHH--HHHHHcCCEEEEEeCccccCCccCHHHHHHhcCC----CcEEEEEeCCCCCCCCccCHHHHHHHHHHHHH-
Confidence            9877653  4577889999999874  3467899999998864    5689999999999999997   6678888888 


Q ss_pred             CCCcEEEEecccccCcc---ee-c---cCcccceEEEecCCCcccCCC--cceEEEec-HH-HH---HHhccCCCCcccc
Q 015729          167 RHPALFLVDGVSSICAI---DF-R---MDEWGIDVALTGSQKALSLPT--GMGIVCAS-PK-AL---EASKTAKSVRVFF  232 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~---~~-~---~~~~~~di~~~s~~K~l~g~~--g~G~l~~~-~~-~~---~~~~~~~~~~~~~  232 (401)
                       +|++||+|++|.....   ++ .   +......+++.|.+|.++ .+  ++||+++. ++ ..   +.+...+      
T Consensus       236 -~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~-~pGlRiG~~v~~~p~~~~~~~~~~~~~~------  307 (462)
T PLN02187        236 -LGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWV-VPGWKIGWIALNDPEGVFETTKVLQSIK------  307 (462)
T ss_pred             -CCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcC-CccceeEEEEecCchhHHHHHHHHHHHH------
Confidence             9999999999875321   11 1   111123678899999974 44  46999974 33 21   2222110      


Q ss_pred             chHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEE
Q 015729          233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVI  312 (401)
Q Consensus       233 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~  312 (401)
                            ..+    .+...++.....++.++++......+++.++.++++++.+.+.|++++.......+  ..+.+++++
T Consensus       308 ------~~~----~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P--~gg~fl~~~  375 (462)
T PLN02187        308 ------QNL----DVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKP--ESCTYLLTK  375 (462)
T ss_pred             ------Hhc----cccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCC--CEeEEEEee
Confidence                  000    00112344444445555432112236778888999999999999987432211111  234577776


Q ss_pred             cCC----CC-CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          313 VPS----HI-NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       313 ~~~----~~-~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                      ++.    ++ +..+++..+..+.||.+.+|......+++||++..  .++.+++++++|.+++++...
T Consensus       376 l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~~--~~e~l~~al~rL~~~l~~~~~  441 (462)
T PLN02187        376 LELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIGV--EAHMLEDALERLKGFCTRHAK  441 (462)
T ss_pred             cChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEeCC--CHHHHHHHHHHHHHHHHHhhh
Confidence            642    22 45577666655569999999554446899998764  689999999999999986643

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.96  E-value=1.9e-27  Score=223.73  Aligned_cols=321  Identities=18%  Similarity=0.113  Sum_probs=229.1

Q ss_pred             CCCcCChHHHHHHHcc--CcCCCCCccHHHHHHHHHHHHHHHhcCC-----CCceEEecCChhHHHHHHHhccCCCCCeE
Q 015729           15 PGPVHIPDQVIRAMNR--NNEDYRSPAVPALTKTLLEDIKKIFKTT-----SGTPFLIPTTGTGAWESALTNTLSPGDRI   87 (401)
Q Consensus        15 ~~p~~~~~~v~~a~~~--~~~~~~~~~~~~~~~~l~~~la~~~g~~-----~~~~i~~~~g~t~a~~~~~~~~~~~gd~v   87 (401)
                      ..|....+.+++++..  .......+.......++++.++++++..     ....+++++|+++++..++.++.++||+|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~g~~v   86 (350)
T cd00609           7 EPDFPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEV   86 (350)
T ss_pred             CCCCCCCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCCCCCEE
Confidence            3455555555555543  2222223333455567777777777654     23458999999999999999888999999


Q ss_pred             EEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCCh--HHHHHHHhccCCCCceEEEEEecCCCcccccchHHH---HHH
Q 015729           88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKL--DVLASKLAADTAHTIKAICIVHNETATGVTNNLSKV---RKL  162 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~--~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i---~~l  162 (401)
                      +++.++|+++.  ..++..|.+++.++.+.++..+.  +.+++..+    ++++++++++++||+|.+.|++++   .++
T Consensus        87 l~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~  160 (350)
T cd00609          87 LVPDPTYPGYE--AAARLAGAEVVPVPLDEEGGFLLDLELLEAAKT----PKTKLLYLNNPNNPTGAVLSEEELEELAEL  160 (350)
T ss_pred             EEcCCCchhHH--HHHHHCCCEEEEEecccccCCccCHHHHHhhcC----ccceEEEEECCCCCCCcccCHHHHHHHHHH
Confidence            99999888764  56778899999999987766554  55555443    468999999999999999986655   589


Q ss_pred             hhhcCCCcEEEEecccccCcce-------eccCcccceEEEecCCCccc-CCCcceEEEecH-HHHHHhccCCCCccccc
Q 015729          163 LDEYRHPALFLVDGVSSICAID-------FRMDEWGIDVALTGSQKALS-LPTGMGIVCASP-KALEASKTAKSVRVFFD  233 (401)
Q Consensus       163 ~~~~~~~~~li~D~a~~~~~~~-------~~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~-~~~~~~~~~~~~~~~~~  233 (401)
                      |++  +|+++|+|++|+.+...       ......+.|+++.|.+|+++ ++.++|++++++ ++.+.+....       
T Consensus       161 ~~~--~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~-------  231 (350)
T cd00609         161 AKK--HGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLL-------  231 (350)
T ss_pred             HHh--CCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHH-------
Confidence            999  99999999998764321       22345678999999999996 456689999999 6666654321       


Q ss_pred             hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEc
Q 015729          234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV  313 (401)
Q Consensus       234 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~  313 (401)
                            .     ...++++...+.++..+++... .++++..+++.++++++.+.|++.+......  . .++.++++.+
T Consensus       232 ------~-----~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~-~~g~~~~~~~  296 (350)
T cd00609         232 ------P-----YTTSGPSTLSQAAAAAALDDGE-EHLEELRERYRRRRDALLEALKELGPLVVVK--P-SGGFFLWLDL  296 (350)
T ss_pred             ------H-----hcccCCChHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCccccC--C-CccEEEEEec
Confidence                  0     1123466666666666666544 4577888899999999999999975443211  1 3456777888


Q ss_pred             CCCCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          314 PSHINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       314 ~~~~~~~~l~~~L~~~~~i~v~~g~~~~--~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      +...+...+.+.|. +.||.+.++....  .+.++|+++...  ++|+++++++|++
T Consensus       297 ~~~~~~~~~~~~l~-~~gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i~~~~~al~~  350 (350)
T cd00609         297 PEGDDEEFLERLLL-EAGVVVRPGSAFGEGGEGFVRLSFATP--EEELEEALERLAE  350 (350)
T ss_pred             CCCChHHHHHHHHH-hCCEEEecccccccCCCCeEEEEeeCC--HHHHHHHHHHhhC
Confidence            55434555656665 5599998774432  567899988875  9999999999863

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.96  E-value=5.7e-27  Score=223.41  Aligned_cols=297  Identities=18%  Similarity=0.197  Sum_probs=215.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE  119 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  119 (401)
                      ..+...++++.+++++|.+.  .++++ +|++++..++.+++++||.|++..+.|++..  ......|++++.++     
T Consensus        76 ~~~l~~~l~~~l~~~~g~~~--~i~~~-sG~~a~~~a~~~~~~~gd~vi~~~~~~~~~~--~~~~~~g~~~~~~~-----  145 (385)
T TIGR01825        76 TLRLHEELEEKLAKFKKTEA--ALVFQ-SGFNTNQGVLSALLRKGDIVLSDELNHASII--DGLRLTKATKKIYK-----  145 (385)
T ss_pred             CcHHHHHHHHHHHHHhCCCc--EEEEC-cHHHHHHHHHHHhCCCCCEEEEEccccHHHH--HHHHhcCCceEEeC-----
Confidence            35678899999999988643  35555 4577888888888999999999888766653  23445677776553     


Q ss_pred             CCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcce---------eccCcc
Q 015729          120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID---------FRMDEW  190 (401)
Q Consensus       120 ~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~---------~~~~~~  190 (401)
                      .+|++++++.+.+...++++++++++++|++|.+.|+++|.++|++  +|+++|+|++|+.+...         ++.. .
T Consensus       146 ~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~  222 (385)
T TIGR01825       146 HADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAER--YGAVTYVDDAHGSGVMGEAGRGTVHHFGLE-D  222 (385)
T ss_pred             CCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHHH--hCCEEEEECcccccCcCCCCCccHhhcCCC-c
Confidence            3688999998875433467899999889999999999999999999  99999999999765432         2222 4


Q ss_pred             cceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhc
Q 015729          191 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG  270 (401)
Q Consensus       191 ~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g  270 (401)
                      +.|+++.|.+|+++ ..| |+++.+++..+.+......            +.    +....+...++++.++++.+.+. 
T Consensus       223 ~~~i~~~s~sK~~~-~~g-G~~~~~~~~~~~~~~~~~~------------~~----~~~~~~~~~~~a~~~al~~~~~~-  283 (385)
T TIGR01825       223 KVDIQVGTLSKAIG-VVG-GYAAGHKELIEYLKNRARP------------FL----FSTAQPPAVVAALAAAVDELQRS-  283 (385)
T ss_pred             CCcEEEEeccHHhh-cCC-CEEecCHHHHHHHHHhCcc------------cc----ccCCCCHHHHHHHHHHHHHHhcC-
Confidence            67899999999994 555 8999888887766432110            00    01123445566777777765443 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC---CCCcEEE
Q 015729          271 LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK---VAGKVFR  347 (401)
Q Consensus       271 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~---~~~~~~R  347 (401)
                       .+..++..++.+++.+.|+++|+++..+.    .+ ++.+.++...+..++++.|.++ ||.+.+...+   ....++|
T Consensus       284 -~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~~-~~~~~~~~~~~~~~~~~~L~~~-gi~v~~~~~~~~~~~~~~iR  356 (385)
T TIGR01825       284 -PELMERLWDNTRFFKAGLGKLGYDTGGSE----TP-ITPVVIGDEKAAQEFSRRLFDE-GIFAQSIVFPTVPRGTARIR  356 (385)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHcCCCCCCCC----CC-EEEEEECCHHHHHHHHHHHHHC-CcEEcccCCCCCCCCCceEE
Confidence             34677778889999999998888876532    22 4445553322456899999887 9988644222   1235799


Q ss_pred             EeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          348 IGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       348 i~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                      +++..+++++|+++++++|+++++++|+
T Consensus       357 i~~~~~~~~e~i~~~~~~l~~~~~~~~~  384 (385)
T TIGR01825       357 NIPTAEHTKDDLDQALDAYEKVGKELGL  384 (385)
T ss_pred             EEEcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            9888889999999999999999987654

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.96  E-value=4.1e-27  Score=225.16  Aligned_cols=322  Identities=12%  Similarity=0.027  Sum_probs=225.7

Q ss_pred             CChHHHHHHHccCcCCC--CCccHHHHHHHHHHHHHHHhcCC-----CCceEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           19 HIPDQVIRAMNRNNEDY--RSPAVPALTKTLLEDIKKIFKTT-----SGTPFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~g~~-----~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      ++++.+++++.+.....  ..+.......++|+.++++++..     .++++++++|+|+|+..++.++.++||+|+++.
T Consensus        48 ~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~  127 (403)
T TIGR01265        48 RTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGANILVPR  127 (403)
T ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhCCCCCEEEEeC
Confidence            56677888877643221  12333455678999999999852     345699999999999999999889999999999


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhc
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY  166 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~  166 (401)
                      ++|...  ...++..|++++.++.+.  ++.+|++++++.+.+    +++++++++|+||||.+++   +++|.++|++ 
T Consensus       128 p~y~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~-  200 (403)
T TIGR01265       128 PGFPLY--DTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADE----KTVAIVVINPSNPCGSVFSRDHLQKIAEVARK-  200 (403)
T ss_pred             CCchhH--HHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCc----CccEEEEecCCCCCCCCCCHHHHHHHHHHHHH-
Confidence            976643  356788899999988754  356899999998864    5689999999999999986   7788889999 


Q ss_pred             CCCcEEEEecccccCcce----e---ccCcccceEEEecCCCccc-CCCcceEEEecH--HH-----HHHhccCCCCccc
Q 015729          167 RHPALFLVDGVSSICAID----F---RMDEWGIDVALTGSQKALS-LPTGMGIVCASP--KA-----LEASKTAKSVRVF  231 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~~----~---~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~--~~-----~~~~~~~~~~~~~  231 (401)
                       +|++||+|+++......    .   ........+++.|.+|.++ .+.++|++++.+  +.     .+.+..       
T Consensus       201 -~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~-------  272 (403)
T TIGR01265       201 -LGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKN-------  272 (403)
T ss_pred             -CCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHH-------
Confidence             99999999998743211    1   1111123578889999863 234579998742  22     222211       


Q ss_pred             cchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEE
Q 015729          232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTA  310 (401)
Q Consensus       232 ~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~  310 (401)
                               +...   ...++.....++..+++......+++.++++.++++.+.+.|+.. |+.+..+    ..+.++|
T Consensus       273 ---------~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p----~~g~f~~  336 (403)
T TIGR01265       273 ---------LLQR---ILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCPKP----EGAMYLM  336 (403)
T ss_pred             ---------Hhhh---hcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCC----CceeEEE
Confidence                     1000   112344333444444432112236677888888889999999886 6654333    2446888


Q ss_pred             EEcCCC-----CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          311 VIVPSH-----INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       311 ~~~~~~-----~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +++|++     .+..++...|.++.||.+.+|......+++||++..  .++.+++++++|.+.+++.
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~--~~~~l~~~l~~l~~~~~~~  402 (403)
T TIGR01265       337 VKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITITV--PESMLEEACSRIKEFCERH  402 (403)
T ss_pred             EeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhc
Confidence            888643     267788888766669999999654456889998764  6889999999999988754

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.96  E-value=3.6e-27  Score=228.78  Aligned_cols=339  Identities=15%  Similarity=0.121  Sum_probs=234.5

Q ss_pred             CCcCChHHHHHHHccCc--CCC--CC-----ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHH-HHHH--Hh-ccCC
Q 015729           16 GPVHIPDQVIRAMNRNN--EDY--RS-----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGA-WESA--LT-NTLS   82 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~--~~~--~~-----~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a-~~~~--~~-~~~~   82 (401)
                      +....++.+.+++.+..  ...  ++     .+..+...++++.+++++|.+..  .+..++|+.+ +..+  +. ...+
T Consensus        78 ~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~--~l~~~~GA~a~~~~l~~~r~~~~~  155 (481)
T PRK04366         78 CTMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMDAV--TLQPAAGAHGELTGLLMIRAYHEA  155 (481)
T ss_pred             cCCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCce--EEEeCcHHHHHHHHHHHHHHHhhc
Confidence            45667788888887752  111  21     12346678899999999999742  3343444433 3322  22 3456


Q ss_pred             CCC----eEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc-cchH
Q 015729           83 PGD----RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT-NNLS  157 (401)
Q Consensus        83 ~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~-~~l~  157 (401)
                      +||    +|+++.+.|+++.  ..++..|++++.++.+.++.+|++++++++++    +++++++++|+ ++|.+ .|++
T Consensus       156 ~Gd~~~~~Vlv~~~~hp~~~--~~~~~~G~~vv~v~~~~~~~~D~e~L~~~i~~----~t~~V~v~~Pn-~tG~~~~dl~  228 (481)
T PRK04366        156 RGDTKRTEVIVPDSAHGTNP--ASAAMAGFKVVEIPSNEDGLVDLEALKAAVGE----DTAALMLTNPN-TLGLFERNIL  228 (481)
T ss_pred             cCcCCCCEEEEcCCccHhHH--HHHHHcCCEEEEeecCCCCCcCHHHHHhhccc----CCeEEEEeCCC-CccccchHHH
Confidence            666    8999999887665  45678999999999987788999999999874    56899998876 99987 4899


Q ss_pred             HHHHHhhhcCCCcEEEEecccccCcc-eeccCcccceEEEecCCCcccCC-----CcceEEEecHHHHHHhccCCC----
Q 015729          158 KVRKLLDEYRHPALFLVDGVSSICAI-DFRMDEWGIDVALTGSQKALSLP-----TGMGIVCASPKALEASKTAKS----  227 (401)
Q Consensus       158 ~i~~l~~~~~~~~~li~D~a~~~~~~-~~~~~~~~~di~~~s~~K~l~g~-----~g~G~l~~~~~~~~~~~~~~~----  227 (401)
                      +|.++|++  +|+++++|+++..+.. ..+..++|+|++++++||+|++|     +|+|++++++++.+.+.....    
T Consensus       229 eI~~~a~~--~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g  306 (481)
T PRK04366        229 EIAEIVHE--AGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDG  306 (481)
T ss_pred             HHHHHHHH--cCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccC
Confidence            99999999  9999999999975422 23566789999999999999754     556899999998887754321    


Q ss_pred             CccccchH-HH-HHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCC
Q 015729          228 VRVFFDWK-DY-IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS  305 (401)
Q Consensus       228 ~~~~~~~~-~~-~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  305 (401)
                      ..+.+.+. .+ .+++..     ++.+...+.++...+..+..+|++++.++..++++++++.|.++ +++... .. ..
T Consensus       307 ~~~~l~~~r~~~i~r~~a-----~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~-~~~~~~-~~-~~  378 (481)
T PRK04366        307 DRYRLDYDRPKSIGRVRA-----FYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI-YDLPYD-RP-CM  378 (481)
T ss_pred             CceeecccccccCCCccc-----ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-CcccCC-CC-ee
Confidence            11111111 10 112222     23445555555555566666678888888999999999999986 333321 11 11


Q ss_pred             ceeEEEEcC----CCCCHHHHHHHHHhhCCeEEccCCCCC-CCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          306 DTVTAVIVP----SHINSSEIVRRAWQRYNLSLGLGLNKV-AGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       306 ~~~~~~~~~----~~~~~~~l~~~L~~~~~i~v~~g~~~~-~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                       ..+.+..+    .+.+..++.++|.++ ||.+.....+. ..+.+|+++..++|++|||+++++++++.+++..
T Consensus       379 -~~~~~~~~~~~~~g~~~~~v~~~L~~~-Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~~  451 (481)
T PRK04366        379 -HEFVLSGKKLKETGVRTLDIAKRLLDY-GFHPPTIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAEEAKE  451 (481)
T ss_pred             -EEEEEECccccccCCCHHHHHHHHHHC-CccCCccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence             12223321    245788999999876 98865333322 2567999999899999999999999999876543

>PRK07337 aminotransferase; Validated

Probab=99.96  E-value=2.4e-27  Score=225.88  Aligned_cols=329  Identities=11%  Similarity=0.017  Sum_probs=222.9

Q ss_pred             cccccCCCc-CChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccCC
Q 015729           10 NHLFVPGPV-HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLS   82 (401)
Q Consensus        10 ~~~~~~~p~-~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~   82 (401)
                      ..+..+-|. +.++.+.+++.+.... ...+.......++++.+++++    |.. .++++++|+|+++|+..++.++++
T Consensus        33 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~  112 (388)
T PRK07337         33 IHMGIGEPDFTAPEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVE  112 (388)
T ss_pred             EEeCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhcC
Confidence            334444333 4567777777664321 122222334567778887776    432 335599999999999999988999


Q ss_pred             CCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hH
Q 015729           83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LS  157 (401)
Q Consensus        83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~  157 (401)
                      +||+|++++|+|++..  ..++..|++++.++.+.+  +.+|++++++.+++    +++++++++|+||||.+++   ++
T Consensus       113 ~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~v~l~~p~NPtG~~~~~~~~~  186 (388)
T PRK07337        113 RGDEVLMPDPSYPCNR--HFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGE----RTRGVLLASPSNPTGTSIAPDELR  186 (388)
T ss_pred             CCCEEEEeCCCchhhH--HHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCc----cceEEEEECCCCCCCcCcCHHHHH
Confidence            9999999999877654  456678999999998653  47899999998863    5689999999999999997   56


Q ss_pred             HHHHHhhhcCCCcEEEEecccccCcc---eeccCcccc-eEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCcccc
Q 015729          158 KVRKLLDEYRHPALFLVDGVSSICAI---DFRMDEWGI-DVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFF  232 (401)
Q Consensus       158 ~i~~l~~~~~~~~~li~D~a~~~~~~---~~~~~~~~~-di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~  232 (401)
                      +|.++|++  +++++|+|+++.....   +......+. .+++.|.+|.++ .+.++|++++++++.+++.....     
T Consensus       187 ~i~~~a~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~~~~l~~~l~~~~~-----  259 (388)
T PRK07337        187 RIVEAVRA--RGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFNMTGWRLGWLVVPEALVGTFEKLAQ-----  259 (388)
T ss_pred             HHHHHHHH--CCCEEEEeccccccccCCCCcChhhccCCEEEEEechhhcCCchhheeeeecCHHHHHHHHHHHH-----
Confidence            67788888  9999999999763321   111111222 356789999884 23347999999888776653210     


Q ss_pred             chHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccc-cCCCccCCceeEEE
Q 015729          233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNC-TQKEEWFSDTVTAV  311 (401)
Q Consensus       233 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~  311 (401)
                             .      +..+.+.....++..+++.-....+++.+++++++++.+.+.|++.|+.+. .+    ..+.++|+
T Consensus       260 -------~------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p----~~g~f~~~  322 (388)
T PRK07337        260 -------N------LFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESLGFKVPVMP----DGAFYVYA  322 (388)
T ss_pred             -------H------hccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhcCCccccCC----CeeEEEEE
Confidence                   0      011133332233333332100012456677788888889999988876542 22    34568888


Q ss_pred             EcCC-----CCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          312 IVPS-----HINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       312 ~~~~-----~~~~~~l~~~L~~~~~i~v~~g~~~~---~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      +++.     ..+..+++..|.++.||.+.+|....   ..+++||++..  +++++++++++|.+++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~--~~~~l~~~l~rl~~~l  387 (388)
T PRK07337        323 DCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT--SMSRLEEAVARLGKLF  387 (388)
T ss_pred             ecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecC--CHHHHHHHHHHHHHHh
Confidence            8863     24677888887666699999984432   24689998775  6889999999998764

>PRK07550 hypothetical protein; Provisional

Probab=99.96  E-value=3.1e-27  Score=224.96  Aligned_cols=319  Identities=15%  Similarity=0.066  Sum_probs=222.0

Q ss_pred             cCChHHHHHHHccCcC--CCCCccHHHHHHHHHHHHHHHhc----CC-CCceEEecCChhHHHHHHHhccCCCCCeEEEE
Q 015729           18 VHIPDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIFK----TT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISF   90 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~g----~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   90 (401)
                      .+.++.+.+++.+...  ....+.......++|+.++++++    .. .++++++++|+++|+..++.+++++||+|+++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~  120 (386)
T PRK07550         41 YPPPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILP  120 (386)
T ss_pred             CCCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEc
Confidence            3446667777665321  11122222345566666666664    22 33569999999999999988889999999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhh
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE  165 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~  165 (401)
                      .|+|+.+.  ..++..|++++.++.++  ++.+|++++++.+++    +++++++++|+||||.+++   +++|.++|++
T Consensus       121 ~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~----~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~  194 (386)
T PRK07550        121 LPWYFNHK--MWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITP----RTRAIALVTPNNPTGVVYPPELLHELYDLARR  194 (386)
T ss_pred             CCCCcchH--HHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcc----cCcEEEEeCCCCCCCcccCHHHHHHHHHHHHH
Confidence            99776553  45678999999999874  345789999999974    5689999999999999997   6778999999


Q ss_pred             cCCCcEEEEecccccCcc----eecc---Cc-ccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHH
Q 015729          166 YRHPALFLVDGVSSICAI----DFRM---DE-WGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKD  236 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~~----~~~~---~~-~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~  236 (401)
                        +|++||+|++++....    +...   .. ....+++.|.+|.++ .+.++|+++++++.++.+.....         
T Consensus       195 --~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~---------  263 (386)
T PRK07550        195 --HGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPARIAEIEKFMD---------  263 (386)
T ss_pred             --cCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCHHHHHHHHHHHh---------
Confidence              9999999999864321    1111   11 123577899999985 33457999999888766543210         


Q ss_pred             HHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCC
Q 015729          237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS  315 (401)
Q Consensus       237 ~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~  315 (401)
                            .   ...+++.....++..+++.+. ...++.++++.++++.+.+.|.+. ++.+..     ..+.++|+.+|.
T Consensus       264 ------~---~~~~~s~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-----~g~~~~~~~~~~  328 (386)
T PRK07550        264 ------T---VAICAPRIGQIAVAWGLPNLA-DWRAGNRAEIARRRDAFRAVFARLPGWELLA-----SGAYFAYVRHPF  328 (386)
T ss_pred             ------h---cccCCCcHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHHhCCCceeCC-----CceEEEEecCCC
Confidence                  0   011234444444445554322 234566777888888899999885 554322     234678888876


Q ss_pred             -CCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          316 -HINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       316 -~~~~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                       +.++.+++..|.+++||.+.+|...  ..++++||++. ..+++++++++++|.+.
T Consensus       329 ~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~-~~~~~~~~~~~~~l~~~  384 (386)
T PRK07550        329 PDRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFA-NADVAGIGELVERLRAF  384 (386)
T ss_pred             CCCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEee-cCCHHHHHHHHHHHHhh
Confidence             6788999999876679999998432  23568999875 46799999999999764

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.96  E-value=1.5e-27  Score=225.29  Aligned_cols=307  Identities=13%  Similarity=0.098  Sum_probs=215.6

Q ss_pred             CcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEe-cCChhHHHHHHHhccCCCCCeEEEEcCCcc
Q 015729           17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLI-PTTGTGAWESALTNTLSPGDRIISFLIGQF   95 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~-~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~   95 (401)
                      |...++.+++++.+.......+.. ....++++.+++++|.++.+ +++ ++|+++++..++.+++++||+|+++.|.|+
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~y~~-~~~~~lr~~ia~~~~~~~~~-i~~~~~Ga~~~i~~~~~~~~~~gd~vlv~~p~y~  122 (361)
T PRK00950         45 PLGPSPKAVEAIEKELSKIHRYPE-PDAPELREALSKYTGVPVEN-IIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFS  122 (361)
T ss_pred             CCCCCHHHHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHhCCCHHH-EEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCChH
Confidence            556677788777664322211211 12378999999999987654 777 778888898888888899999999998655


Q ss_pred             hHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEe
Q 015729           96 SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD  175 (401)
Q Consensus        96 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D  175 (401)
                      .+  ...++..|++++.++.+.++.+|++++++.++.    +++++++++|+||||.+.|.+++.++|++  +|+++|+|
T Consensus       123 ~~--~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~v~~~~p~nptG~~~~~~~l~~l~~~--~~~~li~D  194 (361)
T PRK00950        123 YY--EISAKAHGAKPVYAKREEDFSLDVDSVLNAITE----KTKVIFLCTPNNPTGNLIPEEDIRKILES--TDALVFVD  194 (361)
T ss_pred             HH--HHHHHHcCCEEEEeecCCCCCcCHHHHHHHhcc----CCCEEEEeCCCCCCCCCcCHHHHHHHHHH--CCcEEEEE
Confidence            43  345778899999999777778999999998863    56899999999999999999999999999  89999999


Q ss_pred             cccccCcce-e-c-cCcccceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCC
Q 015729          176 GVSSICAID-F-R-MDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT  250 (401)
Q Consensus       176 ~a~~~~~~~-~-~-~~~~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  250 (401)
                      ++|...... . . .......+++.|.+|.++ .+|  +|++++++++.+.+.....                    .++
T Consensus       195 e~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~~~~~~~~~~~~~~~~~--------------------~~~  253 (361)
T PRK00950        195 EAYVEFAEYDYTPLALEYDNLIIGRTFSKVFG-LAGLRIGYGFVPEWLIDYYMRAKT--------------------PFS  253 (361)
T ss_pred             CchhhhCccchHHHHHhcCCEEEEEeehHhhc-CchhhcchhcCCHHHHHHHHHhcC--------------------CCC
Confidence            998643210 0 1 112234578889999884 444  7999999988776653211                    111


Q ss_pred             CcHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhh
Q 015729          251 PSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQR  329 (401)
Q Consensus       251 ~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  329 (401)
                      .+.....+   +...+...+ +++..++++++++++.+.|.   +.+...     ...++++.+ ++.+..++++.|.++
T Consensus       254 ~~~~~~~~---a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~---~~~~~~-----~~~~i~~~~-~~~~~~~~~~~l~~~  321 (361)
T PRK00950        254 LTRLSQAA---AIAALSDKEYIEKSIEHGIKSREYLYNELP---FKVYPS-----EANFVLVDV-TPMTAKEFCEELLKR  321 (361)
T ss_pred             CCHHHHHH---HHHHhcCHHHHHHHHHHHHHHHHHHHhhcC---eeECCC-----cceEEEEEC-CCCCHHHHHHHHHHC
Confidence            33333333   333333322 45555556666655555553   333221     234777888 556788999999865


Q ss_pred             CCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          330 YNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       330 ~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                       ||.++++...  ..++++|+++.   +.+++++++++|++++
T Consensus       322 -gv~v~~~~~f~~~~~~~lRis~~---~~~~~~~l~~~L~~il  360 (361)
T PRK00950        322 -GVIVRDCTSFRGLGDYYIRVSIG---TFEENERFLEILKEIV  360 (361)
T ss_pred             -CEEEeeCCccCCCCCCeEEEECC---CHHHHHHHHHHHHHHh
Confidence             9999987432  23468999865   6789999999998875

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.96  E-value=7.8e-27  Score=222.56  Aligned_cols=312  Identities=18%  Similarity=0.140  Sum_probs=222.1

Q ss_pred             ChHHHHHHHccCcCC----C----CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           20 IPDQVIRAMNRNNED----Y----RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~----~----~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      .++.+++++.+....    .    ..........++++.++++++.+  + .+++++|++++..++..++++||+|++..
T Consensus        54 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~--~-~i~~~~g~~~~~~~l~~~~~~gd~V~~~~  130 (385)
T PRK05958         54 RHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAE--R-ALLFSSGYAANLAVLTALAGKGDLIVSDK  130 (385)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCC--c-EEEECcHHHHHHHHHHHhCCCCCEEEEeC
Confidence            456677766653321    1    11123566889999999999853  3 55566778888877778889999999998


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcE
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPAL  171 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~  171 (401)
                      +.|++..  ..++..|++++.++..     |++++++.++... .+++++++.+++|++|...++++|.++|++  +|++
T Consensus       131 ~~~~~~~--~~~~~~g~~~~~~~~~-----d~~~l~~~i~~~~-~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~--~~~~  200 (385)
T PRK05958        131 LNHASLI--DGARLSRARVRRYPHN-----DVDALEALLAKWR-AGRALIVTESVFSMDGDLAPLAELVALARR--HGAW  200 (385)
T ss_pred             ccCHHHH--HHHHhcCCceEEeCCC-----CHHHHHHHHHhcc-CCCeEEEEEecccCCCCcCCHHHHHHHHHH--hCCE
Confidence            8766554  3456678888887643     7899999887531 135677777888999999999999999999  9999


Q ss_pred             EEEecccccCccee---------ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhh
Q 015729          172 FLVDGVSSICAIDF---------RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYN  242 (401)
Q Consensus       172 li~D~a~~~~~~~~---------~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (401)
                      +|+|++|+.+....         .......++++.|.+|+++ +.| |+++.++++.+.+......            + 
T Consensus       201 li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G-g~~~~~~~~~~~~~~~~~~------------~-  265 (385)
T PRK05958        201 LLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALG-SSG-AAVLGSETLIDYLINRARP------------F-  265 (385)
T ss_pred             EEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcc-cCC-cEEEcCHHHHHHHHHhCcc------------c-
Confidence            99999997653321         1222234588899999994 666 8888888876655321100            0 


Q ss_pred             cCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHH
Q 015729          243 LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEI  322 (401)
Q Consensus       243 ~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  322 (401)
                         .+..+++...++++.++++.+...  ++..+++.++.+++.+.|+++++++..+     .+.++++.+++..+..++
T Consensus       266 ---~~~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  335 (385)
T PRK05958        266 ---IFTTALPPAQAAAARAALRILRRE--PERRERLAALIARLRAGLRALGFQLMDS-----QSAIQPLIVGDNERALAL  335 (385)
T ss_pred             ---eecCCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCcCCC-----CCCEEEEEeCCHHHHHHH
Confidence               011234555666777788766543  5678889999999999999888775432     234667777544456789


Q ss_pred             HHHHHhhCCeEEccCCCC---CCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          323 VRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       323 ~~~L~~~~~i~v~~g~~~---~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      .+.|.++ ||.+.++...   ...+++||++..+++++|+++++++|++++
T Consensus       336 ~~~l~~~-gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~  385 (385)
T PRK05958        336 AAALQEQ-GFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL  385 (385)
T ss_pred             HHHHHHC-CceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence            9999866 9999864221   123689999988889999999999998753

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.96  E-value=1.3e-26  Score=221.80  Aligned_cols=336  Identities=15%  Similarity=0.128  Sum_probs=232.2

Q ss_pred             CCCCCCCcccccCCCcCChHHHHHHHccCcCCC---C-CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            3 YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDY---R-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         3 ~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~---~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      +..+..+.||-......+-+++.+++.+.....   + .....+...++++++++++|.+.   .+++++|++|+..++.
T Consensus        47 ~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~---~~~~~SG~~An~~ai~  123 (406)
T PRK13393         47 VTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEA---ALLFTSGYVSNWAALS  123 (406)
T ss_pred             EEEeecccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCCCc---EEEeCCcHHHHHHHHH
Confidence            345566677766665556666666666543211   1 11224567899999999998643   6667777889998887


Q ss_pred             ccCC--CCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccch
Q 015729           79 NTLS--PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL  156 (401)
Q Consensus        79 ~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l  156 (401)
                      .+..  +||.|+.....|.+..  ......|.+++.++.+     |++.+++.++....+++++|++++++|++|.+.|+
T Consensus       124 ~l~~~~~g~~I~~~~~~H~s~~--~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l  196 (406)
T PRK13393        124 TLGSRLPGCVILSDELNHASMI--EGIRHSRAEKRIFRHN-----DPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPI  196 (406)
T ss_pred             HhhcCCCCCEEEEccchhHHHH--HHHHHcCCeEEEeCCC-----CHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhCH
Confidence            6554  6776555555444433  2334567777766533     78888888764322357899999999999999999


Q ss_pred             HHHHHHhhhcCCCcEEEEecccccCcc-ee-----ccC--cccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCC
Q 015729          157 SKVRKLLDEYRHPALFLVDGVSSICAI-DF-----RMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV  228 (401)
Q Consensus       157 ~~i~~l~~~~~~~~~li~D~a~~~~~~-~~-----~~~--~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~  228 (401)
                      ++|.++|++  +|+++|+|++|+.|.+ +.     ...  ...+|+++.+.+|.++ ..| |++++++++.+.+..... 
T Consensus       197 ~~i~~l~~~--~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g-~~G-G~~~~~~~~~~~l~~~~~-  271 (406)
T PRK13393        197 AEICDVAEK--HGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFG-VMG-GYITGSAALCDFIRSFAS-  271 (406)
T ss_pred             HHHHHHHHH--cCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhc-ccC-ceeeCCHHHHHHHHHhCc-
Confidence            999999999  9999999999985542 11     000  1236888889999985 555 888888887766543211 


Q ss_pred             ccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCcee
Q 015729          229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV  308 (401)
Q Consensus       229 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~  308 (401)
                                     +..+.++.++..++++.++++.+.+.+  ..+++.+++.+++++.|+++|+++..+    .. .+
T Consensus       272 ---------------~~~~t~~~~p~~~aa~~aaL~~~~~~~--~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~-~i  329 (406)
T PRK13393        272 ---------------GFIFTTSLPPAVAAGALASVRHLKASS--AERERHQDRVARLRARLDKAGIPHLPN----PS-HI  329 (406)
T ss_pred             ---------------CceecCccCHHHHHHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHHHHcCCCcCCC----CC-Ce
Confidence                           111133456666778888888776543  234667888999999998888765532    22 24


Q ss_pred             EEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       309 ~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~---~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                      +.+.+++..+..++.+.|++++||.+.++..+.   ....+||++..++|++|+|+++++|++++++++.
T Consensus       330 ~~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~~~~  399 (406)
T PRK13393        330 VPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWARLGL  399 (406)
T ss_pred             EEEEeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhcCc
Confidence            455553322456888888876699998764322   2367999999999999999999999999987654

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.96  E-value=3.4e-27  Score=227.26  Aligned_cols=301  Identities=19%  Similarity=0.146  Sum_probs=225.1

Q ss_pred             ccHHHHHHHHHHHHHHHhc----CC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEE
Q 015729           38 PAVPALTKTLLEDIKKIFK----TT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDV  112 (401)
Q Consensus        38 ~~~~~~~~~l~~~la~~~g----~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~  112 (401)
                      +.......++|+.+++++.    .. .+++|++|+|+++|+.+++..+++|||.|++.+|+|++..  ...+..|++++.
T Consensus       128 y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~--~~~~~~g~~~~~  205 (459)
T COG1167         128 YGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGAL--QALEALGARVIP  205 (459)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHH--HHHHHcCCcEEe
Confidence            3334556677777777664    32 3457999999999999999999999999999999988764  678889999999


Q ss_pred             EeCCCCCCCChHHHHHHHhccCCCCceEEEEE-ecCCCcccccchH---HHHHHhhhcCCCcEEEEecccccCcce----
Q 015729          113 VESDWGEGAKLDVLASKLAADTAHTIKAICIV-HNETATGVTNNLS---KVRKLLDEYRHPALFLVDGVSSICAID----  184 (401)
Q Consensus       113 v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~-~~~n~tG~~~~l~---~i~~l~~~~~~~~~li~D~a~~~~~~~----  184 (401)
                      |++|.+| +|+++||+.+.+   .++|+++++ ..+||||.+++.+   +|.++|++  +|++||+|+.++.....    
T Consensus       206 vp~d~~G-~~~e~le~~~~~---~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~--~~~~IIEDD~y~el~~~~~p~  279 (459)
T COG1167         206 VPVDEDG-IDPEALEEALAQ---WKPKAVYVTPTFQNPTGVTMSLERRKALLALAEK--YDVLIIEDDYYGELRYDGPPP  279 (459)
T ss_pred             cCCCCCC-CCHHHHHHHHhh---cCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHH--cCCeEEeeCcchhhhcCCCCC
Confidence            9999664 899999999986   367888766 4579999999865   59999999  99999999997743221    


Q ss_pred             ---eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHH
Q 015729          185 ---FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRA  261 (401)
Q Consensus       185 ---~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~  261 (401)
                         ...+..+..+++.|.+|+++.+.++||+++++++++++...+.             ....     .++...   +.+
T Consensus       280 ~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~~~~~~~~~k~-------------~~~~-----~~s~~~---Q~~  338 (459)
T COG1167         280 PPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPELIEKLLRLKQ-------------AADL-----GPSSLS---QAA  338 (459)
T ss_pred             CChHhhCCCCCEEEEeeehhhcccccceeeeeCCHHHHHHHHHHHH-------------HhcC-----CCChHH---HHH
Confidence               2233457889999999999877789999999998887764321             1111     133322   222


Q ss_pred             HHHHHHH----hcHHHHHHHHHHHHHHHHHHHHHc-C--CccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEE
Q 015729          262 ALDLIFE----EGLENVIERHRRLGKATRLAVEAW-G--LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSL  334 (401)
Q Consensus       262 al~~~~~----~g~~~~~~~~~~~~~~l~~~L~~~-g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v  334 (401)
                      ....+..    ..+.+.++.+.+..+.+.+.|.+. +  +.+..+    ..+.++|+++|++.+..++...+.++ |+.+
T Consensus       339 la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p----~gG~flwl~l~~~~~~~~l~~~a~~~-gv~i  413 (459)
T COG1167         339 LAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRP----EGGLFLWLELPEGIDARELLAAALEK-GVVV  413 (459)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecC----CceEEEEEEcCCCCCHHHHHHHHHHC-CCEE
Confidence            2233331    125677777888888888888885 2  233332    35789999999999999999999877 8888


Q ss_pred             cc-CCCCC----CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          335 GL-GLNKV----AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       335 ~~-g~~~~----~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .+ |....    ..+.+|+++.. .+++++++.+.+|.+++++.
T Consensus       414 ~~~g~~f~~~~~~~~~~Rl~~s~-~~~e~i~~gi~~l~~~~~~~  456 (459)
T COG1167         414 TPLGSAFSADGDPRNGLRLSFSS-PSEEEIEEGIKRLAALLREA  456 (459)
T ss_pred             EcCCccccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHHHHHHHH
Confidence            77 63322    23479997665 77999999999999988764

>PRK09082 methionine aminotransferase; Validated

Probab=99.96  E-value=5e-27  Score=223.33  Aligned_cols=317  Identities=13%  Similarity=0.069  Sum_probs=222.4

Q ss_pred             CChHHHHHHHccCcCC---CCC--ccHHHHHHHHHHHHHHHhcCCC--CceEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           19 HIPDQVIRAMNRNNED---YRS--PAVPALTKTLLEDIKKIFKTTS--GTPFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~---~~~--~~~~~~~~~l~~~la~~~g~~~--~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      +.++.+.+++.+....   .+.  .+..++.+.+.+.+.+.+|.+.  ...+++++|+++|+..++.+++.+||+|+++.
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~  122 (386)
T PRK09082         43 DGPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFD  122 (386)
T ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeC
Confidence            3456677776663211   111  1234455556666666667642  23599999999999999988899999999999


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcC
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR  167 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~  167 (401)
                      +.|.++.  ..++..|++++.++.+. ++.+|++++++.++.    +++++++++++||||.+++   +++|.++|++  
T Consensus       123 p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~--  194 (386)
T PRK09082        123 PSYDSYA--PAIELAGGRAVRVALQPPDFRVDWQRFAAAISP----RTRLIILNTPHNPSGTVWSAADMRALWQLIAG--  194 (386)
T ss_pred             CCchhhH--HHHHHcCCEEEEEecCcccccCCHHHHHHhcCc----cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHH--
Confidence            9877653  45677899999999864 457899999998863    5799999999999999864   6778999999  


Q ss_pred             CCcEEEEecccccCcce-------eccCc-ccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHH
Q 015729          168 HPALFLVDGVSSICAID-------FRMDE-WGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYI  238 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~~-------~~~~~-~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (401)
                      +|+++|+|++|......       ..... ....+++.|.+|.++ .+.++|++++++++++.+.....           
T Consensus       195 ~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~~l~~~~~~~~~-----------  263 (386)
T PRK09082        195 TDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAALSAEFRKVHQ-----------  263 (386)
T ss_pred             CCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCCHHHHHHHHHHHh-----------
Confidence            99999999998643211       11111 245688899999984 23347999999988776654210           


Q ss_pred             HHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC--C
Q 015729          239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS--H  316 (401)
Q Consensus       239 ~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~--~  316 (401)
                        +     ...+.+.....++...++. .+..+++.++.++++++.+.+.|++.++++..+    .++.++|+.+|+  +
T Consensus       264 --~-----~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~----~g~~~~~~~~~~~~~  331 (386)
T PRK09082        264 --Y-----NTFTVNTPAQLALADYLRA-EPEHYLELPAFYQAKRDRFRAALANSRFKLLPC----EGTYFQLVDYSAISD  331 (386)
T ss_pred             --h-----hcCCCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC----CeeEEEEEeccccCC
Confidence              0     0112333333333333321 122356677888899999999999877776543    345678888863  5


Q ss_pred             CCHHHHHHHHHhhCCeEEccCCC----CCCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          317 INSSEIVRRAWQRYNLSLGLGLN----KVAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       317 ~~~~~l~~~L~~~~~i~v~~g~~----~~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      .+..++++.|.+++||.+.+|..    +...+++|+++..  +++++++.+++|++
T Consensus       332 ~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~--~~~~l~~~~~rl~~  385 (386)
T PRK09082        332 LDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAK--QEETLDAAAERLCQ  385 (386)
T ss_pred             CCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecC--CHHHHHHHHHHHhh
Confidence            67889999887677999999842    2234689998764  78899999998865

>PRK08363 alanine aminotransferase; Validated

Probab=99.96  E-value=5.1e-27  Score=224.32  Aligned_cols=324  Identities=14%  Similarity=0.087  Sum_probs=219.8

Q ss_pred             CChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHhcC----C-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKT----T-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~g~----~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      ++++.+.+++.+.... ...+.......++|+.++++++.    . .++++++++|+++|+..++.+++++||+|+++++
T Consensus        46 ~p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p  125 (398)
T PRK08363         46 QPPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGP  125 (398)
T ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhCCCCCEEEEcCC
Confidence            5677777777663321 11233345566888888888742    2 3345999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHcCCcEEEE-eCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcC
Q 015729           93 GQFSLLWIDQQQRLNFNVDVV-ESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR  167 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v-~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~  167 (401)
                      .|.++.  ..++..|++++.+ +.++ ++.+|++++++.+.+    +++++++++|+||||.+++   +++|.++|++  
T Consensus       126 ~y~~~~--~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~----~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~--  197 (398)
T PRK08363        126 SYPPYT--GLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITE----KTKAIAVINPNNPTGALYEKKTLKEILDIAGE--  197 (398)
T ss_pred             CCcchH--HHHHHcCCEEEEeccccccCCcCCHHHHHhhCCc----ceEEEEEECCCCCCCcCcCHHHHHHHHHHHHH--
Confidence            877654  4567788888887 4443 346889999988863    5699999999999999997   7788888999  


Q ss_pred             CCcEEEEecccccCcce------eccCcccceEEEecCCCccc-CCCcceEEEe--cHHHHHHhccCCCCccccchHHHH
Q 015729          168 HPALFLVDGVSSICAID------FRMDEWGIDVALTGSQKALS-LPTGMGIVCA--SPKALEASKTAKSVRVFFDWKDYI  238 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~~------~~~~~~~~di~~~s~~K~l~-g~~g~G~l~~--~~~~~~~~~~~~~~~~~~~~~~~~  238 (401)
                      +|+++|+|++|......      .........+++.|.+|+++ .+.++|++++  +++..+.+....            
T Consensus       198 ~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~------------  265 (398)
T PRK08363        198 HDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAI------------  265 (398)
T ss_pred             cCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHH------------
Confidence            99999999998643211      11111223577889999863 3345799997  555555443210            


Q ss_pred             HHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCC-
Q 015729          239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSH-  316 (401)
Q Consensus       239 ~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-  316 (401)
                      ..+...   ..+.+.....++.+++... ...+++.+++++++++.+.+.|+++ ++.+..+    ..+.++|+.+|.. 
T Consensus       266 ~~~~~~---~~~~s~~~q~~~~~~l~~~-~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p----~g~~~~~~~l~~~~  337 (398)
T PRK08363        266 DKLARI---RLCPNTPAQFAAIAGLTGP-MDYLEEYMKKLKERRDYIYKRLNEIPGISTTKP----QGAFYIFPRIEEGP  337 (398)
T ss_pred             HHHhcc---cccCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHhcCCCCEecCC----CeEEEEEEEeccCC
Confidence            000000   0123333333334444321 2236677888889999999999887 6665433    2455666677642 


Q ss_pred             -CCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          317 -INSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       317 -~~~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                       .+..+++..++++.||.+.+|...  ...+++|+++.  .+++++++++++|++++++
T Consensus       338 ~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~~~~~  394 (398)
T PRK08363        338 WKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFL--PPVEILEEAMDRFEEFMRE  394 (398)
T ss_pred             CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence             245566656545569999998542  22468999875  4789999999999998865

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.96  E-value=5.6e-27  Score=224.25  Aligned_cols=323  Identities=12%  Similarity=0.036  Sum_probs=224.4

Q ss_pred             cCChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhcCC----CCceEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           18 VHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTT----SGTPFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~----~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      .++++.+.+++.+....  ...+.......++++.++++++..    .++++++++|+++|+..++.+++++||+|+++.
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~v~i~~  126 (401)
T TIGR01264        47 LPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPR  126 (401)
T ss_pred             CCCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHhCCCCCEEEEeC
Confidence            46778888887764322  122333445678899999988731    234599999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhc
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY  166 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~  166 (401)
                      |+|..+  ...++..|++++.++++.  ++.+|++.+++.+++    +++++++++|+||||.+++   +++|.++|++ 
T Consensus       127 P~y~~~--~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~----~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~-  199 (401)
T TIGR01264       127 PGFPLY--ETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDE----KTAALIVNNPSNPCGSVFSRQHLEEILAVAER-  199 (401)
T ss_pred             CCChhH--HHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhcc----CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHH-
Confidence            976544  356788999999988754  357899999998864    4689999999999999986   6678888888 


Q ss_pred             CCCcEEEEecccccCcce----e---ccCcccceEEEecCCCccc-CCCcceEEEecH------HHHHHhccCCCCcccc
Q 015729          167 RHPALFLVDGVSSICAID----F---RMDEWGIDVALTGSQKALS-LPTGMGIVCASP------KALEASKTAKSVRVFF  232 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~~----~---~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~------~~~~~~~~~~~~~~~~  232 (401)
                       +|++||+|+++......    .   ........+++.|.+|.++ .+.++|++++.+      +.++.+..        
T Consensus       200 -~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~--------  270 (401)
T TIGR01264       200 -QCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVK--------  270 (401)
T ss_pred             -CCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHH--------
Confidence             99999999998643211    1   1111122578899999753 233469999864      22222211        


Q ss_pred             chHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEE
Q 015729          233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAV  311 (401)
Q Consensus       233 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~  311 (401)
                              +.. .  ..+++.....++..++....+..+++.+++++++++.+.+.|+++ |+.+..+    ..+.++|+
T Consensus       271 --------~~~-~--~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p----~~g~f~~~  335 (401)
T TIGR01264       271 --------LSQ-R--ILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMP----SGAMYMMV  335 (401)
T ss_pred             --------Hhh-c--cCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCC----CeeeEEEE
Confidence                    100 0  112333333334444432112336777888889999999999987 6554333    34567888


Q ss_pred             EcCC-----CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          312 IVPS-----HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       312 ~~~~-----~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +++.     ..+..++...|.+++||.+.+|......+++||++..  +++++++++++|.++++++
T Consensus       336 ~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~--~~~~l~~~l~rl~~~~~~~  400 (401)
T TIGR01264       336 GIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTV--PVVMMEEACSRIQEFCERH  400 (401)
T ss_pred             EecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcC--CHHHHHHHHHHHHHHHhcc
Confidence            8642     2356788888876669999998544346799998764  6899999999999988754

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PLN03032 serine decarboxylase; Provisional

Probab=99.96  E-value=5.4e-27  Score=218.04  Aligned_cols=326  Identities=12%  Similarity=0.087  Sum_probs=241.0

Q ss_pred             CCcccccCCCcCChHHHHHHHccCcCC--------C-CCccHHHHHHHHHHHHHHHhcCCCCc-eEEecCChhHHHHHHH
Q 015729            8 GKNHLFVPGPVHIPDQVIRAMNRNNED--------Y-RSPAVPALTKTLLEDIKKIFKTTSGT-PFLIPTTGTGAWESAL   77 (401)
Q Consensus         8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~--------~-~~~~~~~~~~~l~~~la~~~g~~~~~-~i~~~~g~t~a~~~~~   77 (401)
                      .+.++-.|.-......+++++......        + .+....+..+++++.+++++|.++++ +.+||+|||+|+..++
T Consensus        23 ~~~~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al  102 (374)
T PLN03032         23 SSVHFGYPYNLDFDYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGI  102 (374)
T ss_pred             hhhccCCCchhccChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHH
Confidence            345555555555555566665553321        1 12235678889999999999997654 2599999999999877


Q ss_pred             hcc--CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc
Q 015729           78 TNT--LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN  155 (401)
Q Consensus        78 ~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~  155 (401)
                      .+.  ..++..|+++..+|++..  +.++..|++++.|+++.++.+|+++|++++++++ .+|.+++++..+|.+|.+.|
T Consensus       103 ~~ar~~~~~~~vi~s~~~H~Sv~--kaa~~lg~~~~~V~~d~~g~id~~~L~~~i~~~~-~~~~lvv~tagtt~tG~idp  179 (374)
T PLN03032        103 LVGREVFPDGILYASRESHYSVF--KAARMYRMEAVKVPTLPSGEIDYDDLERALAKNR-DKPAILNVNIGTTVKGAVDD  179 (374)
T ss_pred             HHHHHhCCCcEEEeCCCceeHHH--HHHHHcCCCCeEeeeCCCCcCcHHHHHHHHHHcC-CCCEEEEEEecCcCCccCCC
Confidence            542  234567888888998875  6678889999999999999999999999998755 36788899999999999999


Q ss_pred             hHHHHHHhhhcCCC-----cEEEEecccccCccee-------ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhc
Q 015729          156 LSKVRKLLDEYRHP-----ALFLVDGVSSICAIDF-------RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK  223 (401)
Q Consensus       156 l~~i~~l~~~~~~~-----~~li~D~a~~~~~~~~-------~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~  223 (401)
                      +++|.++|++  +|     +|+++|+|++.+..++       ++. .++|.+++|+||+++.|.|+|+++++++..+.+.
T Consensus       180 i~eI~~i~~~--~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~-~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~  256 (374)
T PLN03032        180 LDRILRILKE--LGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFR-KPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALS  256 (374)
T ss_pred             HHHHHHHHHH--hCCCCCCeeEEEEccchhhhhhccCCCcccCCC-cCCcEEEECcccccCCCcCeEEEEEEchhhHhhc
Confidence            9999999999  64     6999999998877664       443 3699999999998866999999999988766543


Q ss_pred             cCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcc
Q 015729          224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEW  303 (401)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  303 (401)
                      ..   ..|....        .....++.+....+.+++++..+..+|+.+..++..++++++.+.|++.++++....   
T Consensus       257 ~~---~~Yl~~~--------d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~p---  322 (374)
T PLN03032        257 QN---VEYLNSR--------DATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAGLTCRLNE---  322 (374)
T ss_pred             cC---CcccCCC--------CCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEECC---
Confidence            21   1122111        112233455566788999999998889999999999999999999999888876532   


Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          304 FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      .+. .+.|.-|   ..+.    +. + |..+.+     ..+.+|+.+...++++.+|++++.|++
T Consensus       323 ~~~-~V~f~~~---~~~~----~~-~-~w~l~~-----~~~~~hi~vm~~~~~~~id~fi~dl~~  372 (374)
T PLN03032        323 LSS-TVVFERP---MDEA----FI-K-KWQLAC-----EGDIAHVVVMPNVTVEKLDEFVEELVE  372 (374)
T ss_pred             Cce-EEEEcCC---CcHh----Hh-h-eeeecc-----cCCEEEEEECCCCCHHHHHHHHHHHhc
Confidence            232 3445443   1122    22 2 433331     134899998888899999999988865

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.96  E-value=6.4e-27  Score=220.20  Aligned_cols=311  Identities=12%  Similarity=0.082  Sum_probs=214.2

Q ss_pred             CCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcc
Q 015729           16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF   95 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~   95 (401)
                      .|.++++.+++++.+.......+.. ....++|+.++++++.+++ ++++++|+++++..++.++ .+|+ +++++|+|.
T Consensus        30 ~~~~~p~~~~~a~~~~~~~~~~y~~-~~~~~lr~~ia~~~~~~~~-~i~it~Ga~~~l~~~~~~l-~~g~-viv~~P~y~  105 (356)
T PRK08056         30 NPLGMPVSLKRAIIDNLDCAERYPD-VEYRHLHQALARHHQVPAS-WILAGNGETESIFAVVSGL-KPRR-AMIVTPGFA  105 (356)
T ss_pred             CCCCCCHHHHHHHHHHHHhcccCcC-ccHHHHHHHHHHHhCcChh-hEEECCCHHHHHHHHHHHh-CCCC-EEEeCCCcH
Confidence            3567888899988764332222222 2378999999999998764 5999999999999888764 6775 677778655


Q ss_pred             hHHHHHHHHHcCCcEEEEeCCCCCCCCh-HHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcE
Q 015729           96 SLLWIDQQQRLNFNVDVVESDWGEGAKL-DVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPAL  171 (401)
Q Consensus        96 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~  171 (401)
                      .+  ...++..|++++.++.+.+..+++ +++++.+.    ++++++++++|+||||.+.+   +++|.++|++  ++++
T Consensus       106 ~~--~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~----~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~--~~~~  177 (356)
T PRK08056        106 EY--RRALQQVGCEIRRYSLREADGWQLTDAILEALT----PDLDCLFLCTPNNPTGLLPERQLLQAIAERCKS--LNIA  177 (356)
T ss_pred             HH--HHHHHHcCCeEEEEecccccCCCccHHHHHhcc----CCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHh--cCCE
Confidence            43  356788999999999865433333 34555554    46799999999999999998   6778888888  9999


Q ss_pred             EEEecccccCcce----e-ccCcccceEEEecCCCccc-CCCcceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcC
Q 015729          172 FLVDGVSSICAID----F-RMDEWGIDVALTGSQKALS-LPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLG  244 (401)
Q Consensus       172 li~D~a~~~~~~~----~-~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  244 (401)
                      ||+|+++......    . .......++++.|.||+++ .+.++|+++++ ++..+.+....                 .
T Consensus       178 ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~-----------------~  240 (356)
T PRK08056        178 LILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQQ-----------------M  240 (356)
T ss_pred             EEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhC-----------------C
Confidence            9999997533211    0 1223346789999999996 34457999984 55655554321                 0


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHHHH
Q 015729          245 TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIV  323 (401)
Q Consensus       245 ~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  323 (401)
                         .++.+....+++..+++  .....++.+++++++++.+.+.|+++ ++.+..+     ...+++++++.  +..+++
T Consensus       241 ---~~~~~~~~~~~a~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~  308 (356)
T PRK08056        241 ---PWSINAFAALAGEVILQ--DRAYQQATWQWLAEEGARFYQALCALPLLTVWPG-----RANYLFLRCER--PDIDLQ  308 (356)
T ss_pred             ---CCchhHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCC-----CCcEEEEEcCC--ChHHHH
Confidence               12233333333333332  11124556778889999999999887 6655432     23467787753  457888


Q ss_pred             HHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          324 RRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       324 ~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      +.|.++ ||.++++...  ..++++||++.   +.++.+.++++|+++++
T Consensus       309 ~~l~~~-gI~v~~~~~f~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~  354 (356)
T PRK08056        309 RALLTQ-RILIRSCANYPGLDSRYYRVAIR---SAAENERLLAALRNVLT  354 (356)
T ss_pred             HHHHHC-CeEEEECCCCCCCCCCEEEEEEc---CHHHHHHHHHHHHHHHc
Confidence            988865 9999988543  22468999754   67889999999988764

>PLN02822 serine palmitoyltransferase

Probab=99.96  E-value=1.7e-26  Score=223.63  Aligned_cols=335  Identities=13%  Similarity=0.114  Sum_probs=236.1

Q ss_pred             CCCCCCCcccccCCCcCChHHHHHHHccCcCCCC----CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            3 YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         3 ~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~----~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      |.++.+..|+...++..+-+++.+++.++.....    .+...+...+++++|+++++.+.  .+++++|++ ++..++.
T Consensus       111 ~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~~--~i~~s~G~~-a~~sai~  187 (481)
T PLN02822        111 VVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPD--SILYSYGLS-TIFSVIP  187 (481)
T ss_pred             EEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCCCC--EEEECCHHH-HHHHHHH
Confidence            3445555666666666666677777766543221    23456788999999999999764  377776655 6788888


Q ss_pred             ccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccC-----CCCc-eEEEEEecCCCccc
Q 015729           79 NTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT-----AHTI-KAICIVHNETATGV  152 (401)
Q Consensus        79 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~-----~~~~-~~i~~~~~~n~tG~  152 (401)
                      ++.++||.|++....|++..  ...+..+.+++.++.+     |.+.++..+++..     .+++ ++|+++.+++++|.
T Consensus       188 a~~~~gd~Ii~d~~~H~s~~--~~~~ls~~~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~  260 (481)
T PLN02822        188 AFCKKGDIIVADEGVHWGIQ--NGLYLSRSTIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQ  260 (481)
T ss_pred             HhCCCCCEEEEeCCccHHHH--HHHHHcCCeEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCC
Confidence            99999999987766555442  3455567888888765     4556665554311     0234 68899899999999


Q ss_pred             ccchHHHHHHhhhcCCCcEEEEecccccCcce---------eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhc
Q 015729          153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAID---------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK  223 (401)
Q Consensus       153 ~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~---------~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~  223 (401)
                      +.|+++|.++|++  ||+++|+|++|++|.+.         +++....+|+++.|.+|.+ |..| |+++++++.++.+.
T Consensus       261 i~~L~~i~~l~~k--~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKal-g~~G-G~i~g~~~ii~~~~  336 (481)
T PLN02822        261 IAPLDEIVRLKEK--YRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHAL-ATEG-GFCTGSARVVDHQR  336 (481)
T ss_pred             ccCHHHHHHHHHH--cCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhh-hhCC-eEEEcCHHHHHHHH
Confidence            9999999999999  99999999999966532         1222225799999999999 4666 99999999887765


Q ss_pred             cCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 015729          224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE  302 (401)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~  302 (401)
                      ....                +..+..+.++..++++.++++.+..  ..+.+++++++.+++++.|++. |+.+..+.  
T Consensus       337 ~~~~----------------~~~fsa~lPp~~~~Aa~~aL~~l~~--~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~--  396 (481)
T PLN02822        337 LSSS----------------GYVFSASLPPYLASAAITAIDVLED--NPSVLAKLKENIALLHKGLSDIPGLSIGSNT--  396 (481)
T ss_pred             hcCC----------------ceeeccccCHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHhcCCcccCCCC--
Confidence            3211                1112223445555666678876654  2568899999999999999986 87765432  


Q ss_pred             cCCceeEEEEcCCCC-----C---HHHHHHHHHhhCCeEEccCCCCC-----CCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          303 WFSDTVTAVIVPSHI-----N---SSEIVRRAWQRYNLSLGLGLNKV-----AGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       303 ~~~~~~~~~~~~~~~-----~---~~~l~~~L~~~~~i~v~~g~~~~-----~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                        ...++.+.+++..     +   ..++++.|+++.||.+.++..+.     .+..+|+++...+|++||++++++|+++
T Consensus       397 --~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~  474 (481)
T PLN02822        397 --LSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRV  474 (481)
T ss_pred             --CCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence              2346666664310     1   25788888855599998763321     1346999888889999999999999998


Q ss_pred             HHhc
Q 015729          370 LKDV  373 (401)
Q Consensus       370 l~~~  373 (401)
                      ++++
T Consensus       475 ~~~~  478 (481)
T PLN02822        475 AASV  478 (481)
T ss_pred             HHHH
Confidence            8764

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.96  E-value=6.8e-27  Score=223.67  Aligned_cols=331  Identities=15%  Similarity=0.068  Sum_probs=219.6

Q ss_pred             cCChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhc----CC-CCceEEecCChhHHHHHHHhccCCCCCeEEEE
Q 015729           18 VHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFK----TT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISF   90 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g----~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   90 (401)
                      .+.++.+.+++.+....  ...|.......++|+.++++++    .+ .++++++|+|+++|+..++.+++++||+|+++
T Consensus        48 ~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~v~  127 (409)
T PLN00143         48 FRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEANILLP  127 (409)
T ss_pred             CCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcCCCCEEEEc
Confidence            47777787877663322  1223333455678888888873    22 33569999999999999999999999999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeCC--CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhh
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE  165 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~  165 (401)
                      .|+|+.+.  ..++..|++++.++.+  .++.+|++++++++++    +++.+++++|+||||.+++   +++|.++|++
T Consensus       128 ~P~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~  201 (409)
T PLN00143        128 RPGFPDVE--TYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADE----NTIAMVIINPGNPCGSVYSYEHLNKIAETARK  201 (409)
T ss_pred             CCCCcCHH--HHHHHcCCEEEEEeccCCCCCcCCHHHHHHhccc----CCEEEEEECCCCCCCCccCHHHHHHHHHHHHH
Confidence            99877654  5577789999999874  3456899999998763    5689999999999999998   5567788888


Q ss_pred             cCCCcEEEEecccccCcc---e---e-ccCcccceEEEecCCCccc-CCCcceEEEec-HH-HHHHhccCCCCccccchH
Q 015729          166 YRHPALFLVDGVSSICAI---D---F-RMDEWGIDVALTGSQKALS-LPTGMGIVCAS-PK-ALEASKTAKSVRVFFDWK  235 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~~---~---~-~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~-~~-~~~~~~~~~~~~~~~~~~  235 (401)
                        ++++||+|++|.....   +   . ........+++.|.+|.++ .+.++|+++++ ++ ..+.+..          .
T Consensus       202 --~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~----------~  269 (409)
T PLN00143        202 --LGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEI----------A  269 (409)
T ss_pred             --cCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHH----------H
Confidence              9999999999874321   1   0 1122224588899999863 23456999983 42 2211100          0


Q ss_pred             HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC
Q 015729          236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS  315 (401)
Q Consensus       236 ~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  315 (401)
                      .........  ... ++.....++.++++......+++.+++++++.+.+.+.|++++.......+  ..+.++|+++|.
T Consensus       270 ~~~~~~~~~--~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p--~gg~f~w~~l~~  344 (409)
T PLN00143        270 DSIKKALNP--APF-PPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKA--EGAFFALVKLNL  344 (409)
T ss_pred             HHHHHHHhc--cCC-CCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC--CeeEEEEEecch
Confidence            000000000  011 222222333333321111236677888888888888888876432211111  245688888863


Q ss_pred             ----CC-CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          316 ----HI-NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       316 ----~~-~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                          +. +..++...+..+.||.+.+|......+++||++..  +++++++++++|++.+++.
T Consensus       345 ~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~--~~~~l~~al~rl~~~l~~~  405 (409)
T PLN00143        345 LLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAV--EQSSLEDGLGRLKSFCGRH  405 (409)
T ss_pred             hhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHHh
Confidence                22 45677766655569999999654456789998764  6899999999999988754

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.96  E-value=1.1e-26  Score=226.54  Aligned_cols=327  Identities=10%  Similarity=0.024  Sum_probs=221.4

Q ss_pred             CCcCChHHHHHHHccCcC----CCCCccHHHHHHHHHHHHHHHhcC----C-CCceEEecCChhHHHHHHHhccC-CCCC
Q 015729           16 GPVHIPDQVIRAMNRNNE----DYRSPAVPALTKTLLEDIKKIFKT----T-SGTPFLIPTTGTGAWESALTNTL-SPGD   85 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~g~----~-~~~~i~~~~g~t~a~~~~~~~~~-~~gd   85 (401)
                      ++...|..+++++.+...    ....|.......++|+.++++++.    + .+++|++|+|+++|+..++.+++ ++||
T Consensus        85 ~~~~~P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD  164 (481)
T PTZ00377         85 VSSLFPADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSD  164 (481)
T ss_pred             ccccCCHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCC
Confidence            444456677776653211    122244445677888888888752    2 34569999999999999999988 7999


Q ss_pred             eEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccC--CCCceEEEEEecCCCcccccc---hHH
Q 015729           86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADT--AHTIKAICIVHNETATGVTNN---LSK  158 (401)
Q Consensus        86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~--~~~~~~i~~~~~~n~tG~~~~---l~~  158 (401)
                      .|+++.|.|+++.  ..++..|++++.++++++  +.+|++++++.+++..  ..+++++++++|+||||.+++   +++
T Consensus       165 ~Vlv~~P~y~~y~--~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~  242 (481)
T PTZ00377        165 GVMIPIPQYPLYS--AAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEE  242 (481)
T ss_pred             EEEECCCCchhHH--HHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHH
Confidence            9999999877654  567788999999998754  4689999999986411  126799999999999999998   677


Q ss_pred             HHHHhhhcCCCcEEEEecccccCcc----ee-c-------cCcc---c-ceEEEecCCCcccCC--CcceEEEe---cHH
Q 015729          159 VRKLLDEYRHPALFLVDGVSSICAI----DF-R-------MDEW---G-IDVALTGSQKALSLP--TGMGIVCA---SPK  217 (401)
Q Consensus       159 i~~l~~~~~~~~~li~D~a~~~~~~----~~-~-------~~~~---~-~di~~~s~~K~l~g~--~g~G~l~~---~~~  217 (401)
                      |+++|++  +|++||+|++|.....    ++ .       ....   + ..+++.|.+|.+.+.  .++||+++   +++
T Consensus       243 i~~~a~~--~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~  320 (481)
T PTZ00377        243 IIKFCYE--KGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPE  320 (481)
T ss_pred             HHHHHHH--CCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHH
Confidence            8889999  9999999999864221    11 1       1111   1 246788999986443  44699986   787


Q ss_pred             HHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHH----------HHHhcHHHHHHHHHHHHHHHHH
Q 015729          218 ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL----------IFEEGLENVIERHRRLGKATRL  287 (401)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~----------~~~~g~~~~~~~~~~~~~~l~~  287 (401)
                      +.+++.....                 .  ..+++.....++.++++.          +.+ .+++..++++++++.+.+
T Consensus       321 li~~l~~~~~-----------------~--~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~rr~~l~~  380 (481)
T PTZ00377        321 VREQIYKLAS-----------------I--NLCSNVVGQLMTGLMCNPPREGDASYPLYKR-ERDAIFTSLKRRAELLTD  380 (481)
T ss_pred             HHHHHHHHhh-----------------e--ecCCChHHHHHHHHHhCCCCCCcccHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            7776654211                 0  112334334444444421          111 133444556788888999


Q ss_pred             HHHHc-CCccccCCCccCCceeEEEEc--CCCC----------CHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeec
Q 015729          288 AVEAW-GLKNCTQKEEWFSDTVTAVIV--PSHI----------NSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHL  351 (401)
Q Consensus       288 ~L~~~-g~~~~~~~~~~~~~~~~~~~~--~~~~----------~~~~l~~~L~~~~~i~v~~g~~~~---~~~~~Ri~~~  351 (401)
                      .|+++ |+.+..++    .+.++|+.+  |.+.          +..+++..+.++.||.+.+|....   ..+++|+++.
T Consensus       381 ~L~~~~g~~~~~p~----gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~  456 (481)
T PTZ00377        381 ELNKIEGVSCQPVE----GAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITIL  456 (481)
T ss_pred             HHhcCCCcEeecCC----eeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC
Confidence            99887 77766542    345666554  2221          133455666666699999995432   2358999876


Q ss_pred             ccCCHHHHHHHHHHHHHHHHh
Q 015729          352 GHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       352 ~~~~~~di~~~~~~i~~~l~~  372 (401)
                        .+++++++++++|++++++
T Consensus       457 --~~~e~l~~~l~rl~~~~~~  475 (481)
T PTZ00377        457 --PPEEQIEEMVKKIKEFHES  475 (481)
T ss_pred             --CCHHHHHHHHHHHHHHHHH
Confidence              5788999999999998765

>PLN02656 tyrosine transaminase

Probab=99.96  E-value=8e-27  Score=223.33  Aligned_cols=332  Identities=14%  Similarity=0.062  Sum_probs=226.0

Q ss_pred             CCcccccCC-C-----cCChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhcC----C-CCceEEecCChhHHHH
Q 015729            8 GKNHLFVPG-P-----VHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKT----T-SGTPFLIPTTGTGAWE   74 (401)
Q Consensus         8 ~~~~~~~~~-p-----~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~----~-~~~~i~~~~g~t~a~~   74 (401)
                      .+.+.++.| |     .++++.+++++.+....  ...|.......++++.++++++.    . .++++++++|+++|+.
T Consensus        31 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~  110 (409)
T PLN02656         31 KRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAID  110 (409)
T ss_pred             CeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHH
Confidence            355566644 4     36678888887663322  12333334556788888888753    1 2345999999999999


Q ss_pred             HHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCccc
Q 015729           75 SALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGV  152 (401)
Q Consensus        75 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~  152 (401)
                      .++.+++++||+|++++|.|+.+.  ..++..|++++.++++.  ++.+|++++++.+++    +++++++++|+||||.
T Consensus       111 ~~~~~l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~----~~~~v~l~~P~NPtG~  184 (409)
T PLN02656        111 VALSMLARPGANILLPRPGFPIYE--LCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQ----NTVALVIINPGNPCGN  184 (409)
T ss_pred             HHHHHHhCCCCeEEEeCCCCCcHH--HHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhcc----CceEEEEECCCCCCCC
Confidence            999888999999999999876543  44566899999999853  356899999998864    4689999999999999


Q ss_pred             ccc---hHHHHHHhhhcCCCcEEEEecccccCcc------ee-ccCcccceEEEecCCCccc-CCCcceEEEec------
Q 015729          153 TNN---LSKVRKLLDEYRHPALFLVDGVSSICAI------DF-RMDEWGIDVALTGSQKALS-LPTGMGIVCAS------  215 (401)
Q Consensus       153 ~~~---l~~i~~l~~~~~~~~~li~D~a~~~~~~------~~-~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~------  215 (401)
                      +++   +++|.++|++  +|++||+|++|.....      +. ........+++.|.+|.++ .+.++|++++.      
T Consensus       185 ~~s~~~~~~i~~~a~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~  262 (409)
T PLN02656        185 VYSYQHLKKIAETAEK--LKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSF  262 (409)
T ss_pred             CCCHHHHHHHHHHHHH--cCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEEEEEeCccccc
Confidence            975   6778888988  9999999999874321      11 1122234688899999863 23456999983      


Q ss_pred             --HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-
Q 015729          216 --PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-  292 (401)
Q Consensus       216 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-  292 (401)
                        +++.+++....             ..      ...++.....++..+++...+..+++.+++++++++.+.+.|+++ 
T Consensus       263 ~~~~~~~~~~~~~-------------~~------~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~  323 (409)
T PLN02656        263 RDPKIVERIKKYF-------------DI------LGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIP  323 (409)
T ss_pred             ccHHHHHHHHHHH-------------hh------hcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence              45555443210             00      011344334444444432112236677888888889999999886 


Q ss_pred             CCccc-cCCCccCCceeEEEEcCCC----C-CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHH
Q 015729          293 GLKNC-TQKEEWFSDTVTAVIVPSH----I-NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGV  366 (401)
Q Consensus       293 g~~~~-~~~~~~~~~~~~~~~~~~~----~-~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i  366 (401)
                      ++... .+    ..+.++|++++..    . +..++...+..+.||.+.+|......+++||++..  +++++++++++|
T Consensus       324 ~~~~~~~p----~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~--~~e~l~eal~rl  397 (409)
T PLN02656        324 CITCPHKP----EGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFAA--DPSSLEEALGRI  397 (409)
T ss_pred             CCcCCcCC----CeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeCC--CHHHHHHHHHHH
Confidence            33221 22    3456788887521    1 34455544444559999999554456799998875  789999999999


Q ss_pred             HHHHHh
Q 015729          367 EMILKD  372 (401)
Q Consensus       367 ~~~l~~  372 (401)
                      ++++..
T Consensus       398 ~~~~~~  403 (409)
T PLN02656        398 KSFYLR  403 (409)
T ss_pred             HHHHHH
Confidence            998864

>PRK09265 aminotransferase AlaT; Validated

Probab=99.96  E-value=1.4e-26  Score=221.72  Aligned_cols=323  Identities=15%  Similarity=0.087  Sum_probs=212.7

Q ss_pred             CChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHh------cCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF------KTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      +.++.+.+++.+.......|.......++++.+++++      +.++ +++++++|+++++..++.+++++||+|++++|
T Consensus        49 ~~~~~i~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~-~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p  127 (404)
T PRK09265         49 EAPDEILRDVIRNLPTAQGYSDSKGLFSARKAIMQYYQQKGIPDVDV-DDIYIGNGVSELIVMAMQALLNNGDEVLVPAP  127 (404)
T ss_pred             CCCHHHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHhccCCCCCCc-ccEEEeCChHHHHHHHHHHhCCCCCEEEEeCC
Confidence            4677777777664322223333344568999999988      4444 45999999999999999889999999999999


Q ss_pred             CcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcC
Q 015729           93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR  167 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~  167 (401)
                      +|+...  ..++..|++++.++++.  ++.+|++++++.+++    +++++++++|+||||.+++   +++|.++|++  
T Consensus       128 ~y~~~~--~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~----~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~--  199 (404)
T PRK09265        128 DYPLWT--AAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITP----RTKAIVIINPNNPTGAVYSKELLEEIVEIARQ--  199 (404)
T ss_pred             CCcChH--HHHHHcCCEEEEEecccccCCCCCHHHHHHhccc----cceEEEEECCCCCCCcCCCHHHHHHHHHHHHH--
Confidence            877543  45667788888887654  346899999998863    5699999999999999998   7788889999  


Q ss_pred             CCcEEEEecccccCcce----e---ccCcccceEEEecCCCccc-CCCcceEEEe--cHHHHHHhccCCCCccccchHHH
Q 015729          168 HPALFLVDGVSSICAID----F---RMDEWGIDVALTGSQKALS-LPTGMGIVCA--SPKALEASKTAKSVRVFFDWKDY  237 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~~----~---~~~~~~~di~~~s~~K~l~-g~~g~G~l~~--~~~~~~~~~~~~~~~~~~~~~~~  237 (401)
                      +|++||+|++|......    .   ........+++.|.+|.++ .+..+|+++.  +++..+.+...            
T Consensus       200 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~------------  267 (404)
T PRK09265        200 HNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEG------------  267 (404)
T ss_pred             CCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHH------------
Confidence            99999999998642210    1   1111123467788999983 2334699986  33322211100            


Q ss_pred             HHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCC
Q 015729          238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS  315 (401)
Q Consensus       238 ~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~  315 (401)
                      .......   ..+++.....++.+++...... .+.+..+++.++++.+.+.|+++ |+.+..+    ..+.++|+.+|.
T Consensus       268 ~~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p----~~g~~l~~~~~~  340 (404)
T PRK09265        268 LDMLASM---RLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIPGVSCVKP----KGALYAFPKLDP  340 (404)
T ss_pred             HHHHhcc---ccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCC----CcceEEEEEecc
Confidence            0000000   1123333334444444311110 01112245667778888888876 7665443    345678888864


Q ss_pred             CC----CHHH-HHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          316 HI----NSSE-IVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       316 ~~----~~~~-l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      ..    +..+ +.+.| .+.||.+.+|...  ..++++|+++.  .+++++++++++|+++++.
T Consensus       341 ~~~~~~~~~~~~~~~l-~~~gv~v~pg~~F~~~~~~~~Ri~~~--~~~e~l~~~l~rl~~~l~~  401 (404)
T PRK09265        341 KVYPIHDDEQFVLDLL-LQEKVLLVQGTGFNWPEPDHFRIVTL--PRVDDLEEAIGRIGRFLSG  401 (404)
T ss_pred             cccCCCCHHHHHHHHH-HhCCEEEECchhhCCCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence            31    3344 44445 4559999998442  23578999884  5899999999999998864

>PRK08175 aminotransferase; Validated

Probab=99.96  E-value=1.2e-26  Score=221.38  Aligned_cols=324  Identities=13%  Similarity=0.122  Sum_probs=223.3

Q ss_pred             hHHHHHHHccCcC--CCCCccHHHHHHHHHHHHHHHh----cCC--CCceEEecCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           21 PDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIF----KTT--SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        21 ~~~v~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~----g~~--~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      ++.+.+++.+...  ....+.......++|+.+++++    |..  +.+++++|+|+++++..++..++++||+|+++.|
T Consensus        44 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P  123 (395)
T PRK08175         44 PPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNP  123 (395)
T ss_pred             CHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCC
Confidence            4445555444221  1122333344557777777765    432  3335999999999999988888999999999999


Q ss_pred             CcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccch---HHHHHHhhhcCCC
Q 015729           93 GQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLLDEYRHP  169 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l---~~i~~l~~~~~~~  169 (401)
                      +|+...  ..++..|++++.++.++++. +++++++++++.. .+++++++++|+||||.+++.   ++|.++|++  +|
T Consensus       124 ~y~~~~--~~~~~~g~~~~~v~~~~~~~-~~~~l~~~l~~~~-~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~--~~  197 (395)
T PRK08175        124 SYPIHI--YGAVIAGAQVRSVPLVEGVD-FFNELERAIRESY-PKPKMMILGFPSNPTAQCVELEFFEKVVALAKR--YD  197 (395)
T ss_pred             CCcchH--HHHHHcCCeEEEEecccCCC-cHHHHHHHHhhcc-CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH--cC
Confidence            877654  33567899999999876543 4888998887532 367999999999999999987   678888999  99


Q ss_pred             cEEEEecccccCcc----ee---ccCc-ccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHH
Q 015729          170 ALFLVDGVSSICAI----DF---RMDE-WGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF  240 (401)
Q Consensus       170 ~~li~D~a~~~~~~----~~---~~~~-~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
                      ++||+|+++.....    ..   .... .+..+++.|.+|.++ .+.++|+++.++++.+.+.....            .
T Consensus       198 i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~~l~~~~~~~~~------------~  265 (395)
T PRK08175        198 VLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKS------------Y  265 (395)
T ss_pred             cEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCCHHHHHHHHHHHh------------h
Confidence            99999999864321    01   1111 234577899999984 22346999999988776653210            0


Q ss_pred             hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCC---
Q 015729          241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI---  317 (401)
Q Consensus       241 ~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~---  317 (401)
                      .      ..+.+.....++.+++... +..+++.++++.++++++.+.|++.|+.+..+    ..+.++|+++|+..   
T Consensus       266 ~------~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p----~~g~~i~i~l~~~~~~~  334 (395)
T PRK08175        266 H------DYGTFTPLQVAAIAALEGD-QQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMP----KASMYVWAKIPEPYAAM  334 (395)
T ss_pred             c------ccCCCcHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC----CEEEEEEEECCcccCCC
Confidence            0      1112222223333444321 22366778888899999999999887665433    24568889987653   


Q ss_pred             CHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          318 NSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       318 ~~~~l~~~L~~~~~i~v~~g~~--~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                      ++.+++..|.++.||.+.++..  ....+++||++.  .+++++++++++|.+.+++.|.
T Consensus       335 ~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~--~~~~~~~~al~~l~~~l~~~~~  392 (395)
T PRK08175        335 GSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALI--ENRDRIRQAIRGIKAMFRADGL  392 (395)
T ss_pred             CHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHhcCC
Confidence            4678888877666999999843  223468999875  4789999999999999987764

>PLN02721 threonine aldolase

Probab=99.96  E-value=7.8e-27  Score=219.90  Aligned_cols=320  Identities=16%  Similarity=0.122  Sum_probs=218.2

Q ss_pred             CCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCC-CCCeEEEEcCCc
Q 015729           16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS-PGDRIISFLIGQ   94 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~-~gd~vl~~~~~~   94 (401)
                      -|..+++.+.+++.+.........+.....++++.+++++|.+.   .+++++|++++..++.++.. +||+|++++++|
T Consensus        14 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~---~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~   90 (353)
T PLN02721         14 TVTKPTDAMRAAMANAEVDDDVLGYDPTALRLEEEMAKIFGKEA---ALFVPSGTMGNLISVLVHCDVRGSEVILGDNSH   90 (353)
T ss_pred             cccCCCHHHHHHHHhccCCCcccCCCHHHHHHHHHHHHHhCCce---eEEecCccHHHHHHHHHHccCCCCeEEEcCccc
Confidence            34556788888887631112122223447899999999999865   56777788888777777676 999999999987


Q ss_pred             chHHH-HHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCC---CCceEEEEEec-CCCcccccc---hHHHHHHhhhc
Q 015729           95 FSLLW-IDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA---HTIKAICIVHN-ETATGVTNN---LSKVRKLLDEY  166 (401)
Q Consensus        95 ~~~~~-~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~---~~~~~i~~~~~-~n~tG~~~~---l~~i~~l~~~~  166 (401)
                      ++..- ...+...|++++.++.+.++.+|++++++.+++...   +++++++++++ +||+|.++|   +++|.++|++ 
T Consensus        91 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~-  169 (353)
T PLN02721         91 IHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKR-  169 (353)
T ss_pred             eehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHH-
Confidence            65541 125677899999999887778899999999974210   25689999775 678999887   6789999999 


Q ss_pred             CCCcEEEEecccccCcce---eccC--cccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHh
Q 015729          167 RHPALFLVDGVSSICAID---FRMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFY  241 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~~---~~~~--~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (401)
                       +|+++|+|++|.++...   .+..  ..++|.++.|.||+++++.| ++++.++++.+.+....             ..
T Consensus       170 -~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G-~~~~~~~~~~~~~~~~~-------------~~  234 (353)
T PLN02721        170 -HGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVG-SVIVGSKSFIRKAKRLR-------------KT  234 (353)
T ss_pred             -cCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCcee-eEEecCHHHHHhHHHHH-------------Hh
Confidence             99999999998765321   1111  23678889999999975443 45677888766544211             00


Q ss_pred             hcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCcc-ccCCCccCCceeEEEEcCCC--C
Q 015729          242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKN-CTQKEEWFSDTVTAVIVPSH--I  317 (401)
Q Consensus       242 ~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~~~~~~~~~~~--~  317 (401)
                      ..+     ++......++ +++..+.. ..+ ..++..++.+.+.+.|+++ ++.+ ... +  .. .++++.++.+  .
T Consensus       235 ~~~-----~~~~~~~~~~-~~~~~l~~-~~~-~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~--~~-~~~~~~~~~~~~~  302 (353)
T PLN02721        235 LGG-----GMRQVGVLAA-AALVALQE-NVP-KLEDDHKKAKLLAEGLNQIKGLRVNVAA-V--ET-NIVYFDITDGSRI  302 (353)
T ss_pred             cCC-----CeehhHHHHH-HHHHHHHH-HHH-HHHHHHHHHHHHHHHHHhCCCcEEecCC-c--cc-eEEEEEccCCccc
Confidence            011     1111111111 12222221 122 2344466788899999887 6644 222 1  23 3677887643  4


Q ss_pred             CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          318 NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       318 ~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      +...+++.|.++ ||.+.++.    ..++|+++..+.+++|+++++++|++++.
T Consensus       303 ~~~~~~~~L~~~-gi~v~~~~----~~~lR~~~~~~~~~~~i~~~~~~l~~~~~  351 (353)
T PLN02721        303 TAEKLCKSLEEH-GVLLMPGN----SSRIRVVTHHQISDSDVQYTLSCFQQAAL  351 (353)
T ss_pred             cHHHHHHHHHhC-CcEEecCC----CceEEEEecCcCCHHHHHHHHHHHHHHhh
Confidence            678899999855 99998763    45899998778899999999999998765

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=6.2e-27  Score=221.49  Aligned_cols=312  Identities=14%  Similarity=0.094  Sum_probs=223.9

Q ss_pred             CCcCChHHHHHHHccCcC----CCCCccHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccCCCCCe
Q 015729           16 GPVHIPDQVIRAMNRNNE----DYRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDR   86 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~   86 (401)
                      .|.+.++.+++++.+...    ....+. .....++|+.+++++    |.+ .++++++|+|+++++..++.+++++||.
T Consensus        36 ~~~~~~~~~~~al~~~l~~~~~~~~~Y~-~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~  114 (368)
T PRK03317         36 NPYPPSPALVADIAEAVAEAAAGLNRYP-DRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGGPGRT  114 (368)
T ss_pred             CCCCCCHHHHHHHHHHHhhhhhhhccCC-CCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhcCCCCE
Confidence            366788888888876432    111222 124568888898888    432 3355999999999999999999999999


Q ss_pred             EEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhc
Q 015729           87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY  166 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~  166 (401)
                      |+++.|+|+.+.  ..++..|++++.++.+.++.+|++++++++++   ++++++++++|+||||.+++.+++.++++. 
T Consensus       115 v~v~~P~y~~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~-  188 (368)
T PRK03317        115 ALGFVPSYSMHP--IIARGTHTEWVEGPRAADFTLDVDAAVAAIAE---HRPDVVFLTSPNNPTGTALPLDDVEAILDA-  188 (368)
T ss_pred             EEEeCCChHHHH--HHHHhcCCeeEEcccCCCCCCCHHHHHHHHhc---cCCCEEEEeCCCCCCCCCCCHHHHHHHHHH-
Confidence            999999876554  55677888888888776778999999999874   356899999999999999999999999999 


Q ss_pred             CCCcEEEEecccccCcce-----ecc-CcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHH
Q 015729          167 RHPALFLVDGVSSICAID-----FRM-DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIK  239 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~~-----~~~-~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (401)
                       .+++||+|++|+.....     ... ......+++.|.+|.++ ++.++|++++++++.+.+.....            
T Consensus       189 -~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~~~~------------  255 (368)
T PRK03317        189 -APGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALRLVRL------------  255 (368)
T ss_pred             -CCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCHHHHHHHHhcCC------------
Confidence             78999999998743211     111 11123477889999985 34457999999998877753211            


Q ss_pred             HhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCH
Q 015729          240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINS  319 (401)
Q Consensus       240 ~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (401)
                              .++.+...++++.++++...  .+.+.++++.++++.+.+.|++.|+.+..+    ..+.+++..++   +.
T Consensus       256 --------~~~~s~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~~~~---~~  318 (368)
T PRK03317        256 --------PYHLSAVTQAAARAALRHAD--ELLASVAALRAERDRVVAWLRELGLRVAPS----DANFVLFGRFA---DR  318 (368)
T ss_pred             --------CCCCCHHHHHHHHHHhhCHH--HHHHHHHHHHHHHHHHHHHHHHCCCEeCCC----CCcEEEEeccC---CH
Confidence                    12244444455555555322  234455667788888888888888765543    23334433442   56


Q ss_pred             HHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          320 SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       320 ~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      .++.+.|.++ ||.+.+..   ..+++||++.   +.+++++++++++++++
T Consensus       319 ~~~~~~l~~~-Gv~v~~~~---~~~~iRi~~~---~~~~~~~~~~~l~~~~~  363 (368)
T PRK03317        319 HAVWQGLLDR-GVLIRDVG---IPGWLRVTIG---TPEENDAFLAALAEVLA  363 (368)
T ss_pred             HHHHHHHHHC-CEEEEeCC---CCCeEEEecC---CHHHHHHHHHHHHHHHH
Confidence            7888888765 99997642   2568999754   67899999999998875

>PRK12414 putative aminotransferase; Provisional

Probab=99.96  E-value=1.7e-26  Score=219.44  Aligned_cols=315  Identities=11%  Similarity=0.091  Sum_probs=216.4

Q ss_pred             CChHHHHHHHccCcC-CCCCc----cHHHHHHHHHHHHHHHhcCC--CCceEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           19 HIPDQVIRAMNRNNE-DYRSP----AVPALTKTLLEDIKKIFKTT--SGTPFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~-~~~~~----~~~~~~~~l~~~la~~~g~~--~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      +.++.+.+++.+... ....|    +..++.+++.+.+++.+|.+  +++++++++|+++|+..++.+++.+||+|+++.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~  121 (384)
T PRK12414         42 APDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVHPGDEVIYFE  121 (384)
T ss_pred             CCCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhcCCCCEEEEeC
Confidence            446667776665221 11222    23455556666666667875  234599999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcC
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR  167 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~  167 (401)
                      |+|..+.  ..++..|++++.++.+. ++.+|++.+++++++    +++++++++++||||.+++   +++|.++|++  
T Consensus       122 p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~----~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~--  193 (384)
T PRK12414        122 PSFDSYA--PIVRLQGATPVAIKLSPEDFRVNWDEVAAAITP----RTRMIIVNTPHNPSATVFSAADLARLAQLTRN--  193 (384)
T ss_pred             CCccchH--HHHHHcCCEEEEEecCccccccCHHHHHhhcCc----ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHH--
Confidence            9876543  45677899999999874 457899999998863    5799999999999999975   6678888888  


Q ss_pred             CCcEEEEecccccCcce---e-cc---Cc-ccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHH
Q 015729          168 HPALFLVDGVSSICAID---F-RM---DE-WGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYI  238 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~~---~-~~---~~-~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (401)
                      +|+++|+|++|......   . ..   .. .+..+++.|.+|.++ .+.++|++++++++.+.+.....           
T Consensus       194 ~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~~l~~~~~-----------  262 (384)
T PRK12414        194 TDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQ-----------  262 (384)
T ss_pred             CCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCHHHHHHHHHHHh-----------
Confidence            99999999998743211   1 11   11 124588999999884 33457999999988776653211           


Q ss_pred             HHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC--
Q 015729          239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS--  315 (401)
Q Consensus       239 ~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~--  315 (401)
                        .  .   ..+.+.....++.   ..+... .+.+.++.++++++.+.+.|++.|+.+..+    ..+.++|+.++.  
T Consensus       263 --~--~---~~~~s~~~q~a~~---~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~----~gg~~~~~~~~~~~  328 (384)
T PRK12414        263 --F--M---VFSADTPMQHAFA---EALAEPASYLGLGAFYQRKRDLLARELAGSRFELLPS----EGSFFMLARFRHFS  328 (384)
T ss_pred             --h--e---ecCCCcHHHHHHH---HHhcCChHHHHHHHHHHHHHHHHHHHHHhCCCeecCC----CcceEEEEcccccC
Confidence              0  0   1113332223333   333221 244567778888999999999887665543    245677777753  


Q ss_pred             CCCHHHHHHHHHhhCCeEEccCCCCC----CCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          316 HINSSEIVRRAWQRYNLSLGLGLNKV----AGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       316 ~~~~~~l~~~L~~~~~i~v~~g~~~~----~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      +.+..++...+.++.||.+.+|....    ..+++||++..  +++++++++++|.+
T Consensus       329 ~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~--~~~~~~~~~~rl~~  383 (384)
T PRK12414        329 DESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK--DDATLVEGARRLCS  383 (384)
T ss_pred             CCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecC--CHHHHHHHHHHHhh
Confidence            22456777665555699999984321    24689998775  78999999998864

>PRK07908 hypothetical protein; Provisional

Probab=99.96  E-value=1.5e-26  Score=217.34  Aligned_cols=308  Identities=12%  Similarity=0.051  Sum_probs=215.7

Q ss_pred             CcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcch
Q 015729           17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFS   96 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~   96 (401)
                      |..+++.+++++.+.......+.......++|+.++++++.+++ ++++|+|+++|+..++.  +++ +.+++..|++..
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~-~I~it~Ga~~al~~~~~--l~~-~~viv~~P~y~~  108 (349)
T PRK07908         33 HDTPPEWLRERLAARLGDLAAYPSTEDERRARAAVAARHGRTPD-EVLLLAGAAEGFALLAR--LRP-RRAAVVHPSFTE  108 (349)
T ss_pred             CCCCCHHHHHHHHHHhhHhhcCCCccchHHHHHHHHHHhCcChh-hEEECCCHHHHHHHHHh--cCC-CeEEEeCCCChH
Confidence            46678888888887543332333335577899999999998664 59999999999998877  567 466777776554


Q ss_pred             HHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEec
Q 015729           97 LLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDG  176 (401)
Q Consensus        97 ~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~  176 (401)
                      . + ..++..|++++.++++.++.+|++.+    +    ++++++++++|+||||.+++.++|.++|+   ++.++|+|+
T Consensus       109 ~-~-~~~~~~G~~i~~v~~~~~~~~d~~~l----~----~~~~~i~l~np~NPTG~~~~~~~l~~l~~---~~~~iIvDe  175 (349)
T PRK07908        109 P-E-AALRAAGIPVHRVVLDPPFRLDPAAV----P----DDADLVVIGNPTNPTSVLHPAEQLLALRR---PGRILVVDE  175 (349)
T ss_pred             H-H-HHHHHcCCEEEeeccCcccCcChhHh----c----cCCCEEEEcCCCCCCCCCcCHHHHHHHHh---cCCEEEEEC
Confidence            3 2 56778999999999887667788754    2    35689999999999999999999999985   466888899


Q ss_pred             ccccCc--ceeccC--cccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCC
Q 015729          177 VSSICA--IDFRMD--EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP  251 (401)
Q Consensus       177 a~~~~~--~~~~~~--~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  251 (401)
                      +|+...  ......  .....+++.|.||.++ .+.++|++++++++++.+.....                    .++.
T Consensus       176 ~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~--------------------~~~~  235 (349)
T PRK07908        176 AFADAVPGEPESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGAPDVLARLTRGRA--------------------HWPV  235 (349)
T ss_pred             cchhhccCCccccccccCCCEEEEeecccccCCccceeeeeecCHHHHHHHHhcCC--------------------CCCc
Confidence            986321  111111  2233577779999884 33446999999998887764321                    1123


Q ss_pred             cHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCC
Q 015729          252 SIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYN  331 (401)
Q Consensus       252 ~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  331 (401)
                      +.....++.+.++......+++.++++.++++++.+.|++.|+++..+.    .+.++++.+|+   ...+.+.|.++ |
T Consensus       236 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~----~g~~~~~~~~~---~~~~~~~l~~~-g  307 (349)
T PRK07908        236 GTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAVGARVVDPA----AAPFVLVRVPD---AELLRKRLRER-G  307 (349)
T ss_pred             cHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhCCcEeccCC----CceEEEEECCc---HHHHHHHHHhC-C
Confidence            3333333322222101112566788888999999999988777665432    34678888863   56777777655 9


Q ss_pred             eEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          332 LSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       332 i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      |.+.+|...  ...+++||++.   +++|+++++++|++++..
T Consensus       308 I~v~~g~~f~~~~~~~vRis~~---~~~~~~~l~~al~~~~~~  347 (349)
T PRK07908        308 IAVRRGDTFPGLDPDYLRLAVR---PRAEVPVLVQALAEILKA  347 (349)
T ss_pred             EEEEECCCCCCCCCCeEEEEeC---CCccHHHHHHHHHHHHhc
Confidence            999998542  23578999873   788999999999887653

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.96  E-value=1.3e-26  Score=221.68  Aligned_cols=328  Identities=16%  Similarity=0.160  Sum_probs=226.8

Q ss_pred             cccccCCC-cCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhc-----CCCCceEEecCChhHHHHHHHhccCCC
Q 015729           10 NHLFVPGP-VHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFK-----TTSGTPFLIPTTGTGAWESALTNTLSP   83 (401)
Q Consensus        10 ~~~~~~~p-~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g-----~~~~~~i~~~~g~t~a~~~~~~~~~~~   83 (401)
                      .++..+.| .+.++.+.+++.+.......+.......++|+.++++++     .++ +++++++|+++|+..++.+++++
T Consensus        33 i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~-~~i~~t~G~~~al~~~~~~l~~~  111 (397)
T PRK07568         33 YHLNIGQPDIKTPEVFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKKWGIDVEP-DEILITNGGSEAILFAMMAICDP  111 (397)
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHhcCCcCcCCCCCCHHHHHHHHHHHHHhCCCCCc-ceEEEcCChHHHHHHHHHHhcCC
Confidence            33444444 456788888887643322233334456788888888874     333 45999999999999998888999


Q ss_pred             CCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCC--C-CChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hH
Q 015729           84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE--G-AKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LS  157 (401)
Q Consensus        84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~-~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~  157 (401)
                      ||+|++++|.|..+  ...++..|++++.++.+.+.  . .+++++++.+++    +++++++++|+||||.+++   ++
T Consensus       112 gd~Vl~~~p~y~~~--~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~----~~~~v~i~~p~NPtG~~~~~~~~~  185 (397)
T PRK07568        112 GDEILVPEPFYANY--NGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITP----KTKAILISNPGNPTGVVYTKEELE  185 (397)
T ss_pred             CCEEEEecCCCccH--HHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCc----cceEEEEECCCCCCCccCCHHHHH
Confidence            99999999866543  34567889999999986432  2 256889888863    5689999999999999986   67


Q ss_pred             HHHHHhhhcCCCcEEEEecccccCcce-------eccCc-ccceEEEecCCCcccC-CCcceEEEec-HHHHHHhccCCC
Q 015729          158 KVRKLLDEYRHPALFLVDGVSSICAID-------FRMDE-WGIDVALTGSQKALSL-PTGMGIVCAS-PKALEASKTAKS  227 (401)
Q Consensus       158 ~i~~l~~~~~~~~~li~D~a~~~~~~~-------~~~~~-~~~di~~~s~~K~l~g-~~g~G~l~~~-~~~~~~~~~~~~  227 (401)
                      +|.++|++  +|++||+|+++......       ..... ....+++.|.+|.++. +.++|+++++ +++.+.+.....
T Consensus       186 ~i~~~~~~--~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~  263 (397)
T PRK07568        186 MLAEIAKK--HDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQ  263 (397)
T ss_pred             HHHHHHHH--CCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHhh
Confidence            78888888  99999999998643210       11111 2345888999999852 4457999874 566554432100


Q ss_pred             CccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCc
Q 015729          228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSD  306 (401)
Q Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~  306 (401)
                                      .   .++++.....++..+++.. +..+++.+++++++++.+.+.|++. ++.+..+    ..+
T Consensus       264 ----------------~---~~~~s~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p----~g~  319 (397)
T PRK07568        264 ----------------A---RLSPPTLEQIGAAALLDTP-ESYFDEVREEYKKRRDILYEELNKIPGVVCEKP----KGA  319 (397)
T ss_pred             ----------------c---cCCCCcHHHHHHHHHhhCC-HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCC----Ccc
Confidence                            0   1123333334444444321 2236677888889999999999886 6554433    244


Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhh-----CCeEEccCCCC----C-CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          307 TVTAVIVPSHINSSEIVRRAWQR-----YNLSLGLGLNK----V-AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       307 ~~~~~~~~~~~~~~~l~~~L~~~-----~~i~v~~g~~~----~-~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .++|+++|.. +..++.+.|.++     .||.+.+|...    . .++++||++..  +++++++++++|++.+++.
T Consensus       320 ~~~~~~l~~~-~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~--~~~~~~~~~~~l~~~l~~~  393 (397)
T PRK07568        320 FYIIAKLPVD-DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVL--NEEDLKRAMEILKEALEKY  393 (397)
T ss_pred             eEEEEecCCC-CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeC--CHHHHHHHHHHHHHHHHHh
Confidence            5678888643 677888888753     58999998432    1 23689998764  6899999999999988754

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=2.1e-26  Score=218.12  Aligned_cols=317  Identities=13%  Similarity=0.068  Sum_probs=219.6

Q ss_pred             CcCChHHHHHHHccCcCC---CCCccHHHHHHHHHHHHHHHhcCC-------CCceEEecCChhHHHHHHHhccCCCCC-
Q 015729           17 PVHIPDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTT-------SGTPFLIPTTGTGAWESALTNTLSPGD-   85 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~g~~-------~~~~i~~~~g~t~a~~~~~~~~~~~gd-   85 (401)
                      |.++++.+++++.+....   ...+. .....++|+.++++++..       .+++|++|+|+++++..++.+++.+|| 
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~~~g~~  117 (374)
T PRK02610         39 PYDLPPDLKQKLAWLYQQGIESNRYP-DGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCLGGEG  117 (374)
T ss_pred             CCCCCHHHHHHHHHHHhhcccccCCC-CCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHcCCCCC
Confidence            567888898888763221   11222 245678999999999721       335599999999999987777777775 


Q ss_pred             eEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC-CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhh
Q 015729           86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLD  164 (401)
Q Consensus        86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~  164 (401)
                      +|++++|+|+.+  ...++..|++++.++.+.+ +.+|++++++++++...++++++++++|+||||.+++.+++.++.+
T Consensus       118 ~Vlv~~P~y~~~--~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~  195 (374)
T PRK02610        118 SILVAEPTFSMY--GILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRS  195 (374)
T ss_pred             eEEEcCCChHHH--HHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHh
Confidence            899999976654  3667889999999998653 6789999999886421136799999999999999999988887765


Q ss_pred             hcCCCcEEEEecccccCcce---eccCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHH
Q 015729          165 EYRHPALFLVDGVSSICAID---FRMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF  240 (401)
Q Consensus       165 ~~~~~~~li~D~a~~~~~~~---~~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
                      . .++++||+|+++......   .........+++.|.+|.++ .+.++|+++.++++.+.+...+.             
T Consensus       196 ~-~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~~~~-------------  261 (374)
T PRK02610        196 L-PEDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVRL-------------  261 (374)
T ss_pred             c-cCCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCcccceeeeecCHHHHHHHHHhcC-------------
Confidence            3 258999999998643211   11112223577899999993 34457999999988877654321             


Q ss_pred             hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCH
Q 015729          241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINS  319 (401)
Q Consensus       241 ~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (401)
                             .++.+.....++..+++...  .+.+..++..+.++.+.+.|+++ ++.+. +    ..+.++|+++|.+.+.
T Consensus       262 -------~~~~~~~~q~a~~~~l~~~~--~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-p----~~g~f~~~~l~~~~~~  327 (374)
T PRK02610        262 -------PYNLPSFSQLAAQLALEHRQ--ELLAAIPEILQERDRLYQALQELPQLRVW-P----SAANFLYLRLSQDAAL  327 (374)
T ss_pred             -------CCCCCHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHhCCCcEeC-C----CcceEEEEeCCCCCCH
Confidence                   11233333344444443221  12233333444566777888776 65543 2    2345788998776678


Q ss_pred             HHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          320 SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       320 ~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .++.+.|.++ ||.++.+     .+++||++.   +.+++++++++|+++++.+
T Consensus       328 ~~~~~~l~~~-gi~v~~~-----~~~lRls~~---~~~~~~~~l~~l~~~l~~~  372 (374)
T PRK02610        328 AALHQALKAQ-GTLVRHT-----GGGLRITIG---TPEENQRTLERLQAALTQL  372 (374)
T ss_pred             HHHHHHHHHC-CEEEEeC-----CCeEEEeCC---CHHHHHHHHHHHHHHHhhc
Confidence            8999988655 9998643     468999864   4577899999999988654

>PRK07777 aminotransferase; Validated

Probab=99.96  E-value=2.6e-26  Score=218.70  Aligned_cols=296  Identities=15%  Similarity=0.104  Sum_probs=209.9

Q ss_pred             HHHHHHHHHHHHH----hcCC--CCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC
Q 015729           42 ALTKTLLEDIKKI----FKTT--SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES  115 (401)
Q Consensus        42 ~~~~~l~~~la~~----~g~~--~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~  115 (401)
                      ....++++.++++    +|.+  +++++++|+|+++|+..++.+++++||+|+++.+.|+++.  ..++..|.+++.++.
T Consensus        61 ~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~--~~~~~~g~~~~~~~~  138 (387)
T PRK07777         61 PGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYA--AVIAMAGAHRVPVPL  138 (387)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhH--HHHHHCCCEEEEeec
Confidence            3345666666654    5654  2225999999999999999888999999999999766543  566778999999988


Q ss_pred             CCC---CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEEEEecccccCcc------
Q 015729          116 DWG---EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAI------  183 (401)
Q Consensus       116 ~~~---~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~~~~------  183 (401)
                      +++   +.+|++++++.+++    +++++++++++||||.+++   +++|.++|++  +++++|+|++|.....      
T Consensus       139 ~~~~~~~~~d~~~l~~~~~~----~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~--~~~~li~De~y~~~~~~~~~~~  212 (387)
T PRK07777        139 VPDGRGFALDLDALRAAVTP----RTRALIVNSPHNPTGTVLTAAELAAIAELAVE--HDLLVITDEVYEHLVFDGARHL  212 (387)
T ss_pred             CCccCCCcCCHHHHHHhcCc----ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHh--cCcEEEEeccchhcccCCCCcc
Confidence            654   35899999998863    5689999999999999986   6778899999  9999999999864321      


Q ss_pred             eec-cC-cccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHH
Q 015729          184 DFR-MD-EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLR  260 (401)
Q Consensus       184 ~~~-~~-~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~  260 (401)
                      ++. .. ..+.++++.|.+|.++ .+.++|+++.++++.+.+.....             +  .   .+..+.....++.
T Consensus       213 ~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~~~~~~~-------------~--~---~~~~~~~~q~~~~  274 (387)
T PRK07777        213 PLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPAPLIAAVRAAKQ-------------Y--L---TYVGGAPFQPAVA  274 (387)
T ss_pred             cHhhCCCCcCcEEEEeechhhccCcCceeEEEecCHHHHHHHHHHHh-------------h--c---ccCCCCHHHHHHH
Confidence            111 11 1346899999999995 23347999999988766653210             0  0   1111221222233


Q ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC--CCCHHHHHHHHHhhCCeEEccCC
Q 015729          261 AALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS--HINSSEIVRRAWQRYNLSLGLGL  338 (401)
Q Consensus       261 ~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~~~i~v~~g~  338 (401)
                      .++..- +..+++.++.+.++++.+.+.|++.|+++..+    ..+.++|++++.  ..++.++++.|.+++||.|.+|.
T Consensus       275 ~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~  349 (387)
T PRK07777        275 HALDHE-DAWVAALRDSLQAKRDRLAAGLAEAGFEVHDS----AGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMS  349 (387)
T ss_pred             HHHhCC-cHHHHHHHHHHHHHHHHHHHHHHhCCCCccCC----CcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCch
Confidence            333211 12255677888999999999999888776554    244677777642  23678999999866799999984


Q ss_pred             CC-----CCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          339 NK-----VAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       339 ~~-----~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      ..     ...+++|+++..  +++++++++++|++..
T Consensus       350 ~f~~~~~~~~~~~Ri~~~~--~~~~l~~~l~~l~~~~  384 (387)
T PRK07777        350 VFYDPADAWNHLVRFAFCK--RDDTLDEAIRRLRALR  384 (387)
T ss_pred             HhCCCCcCCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence            21     113579998764  7999999999998765

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.96  E-value=2.4e-26  Score=222.54  Aligned_cols=303  Identities=15%  Similarity=0.114  Sum_probs=211.5

Q ss_pred             HHHHHHHHHHHHhcC------C-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHH-HcCCcEEEEe
Q 015729           43 LTKTLLEDIKKIFKT------T-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQ-RLNFNVDVVE  114 (401)
Q Consensus        43 ~~~~l~~~la~~~g~------~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-~~g~~~~~v~  114 (401)
                      ...++|+.++++++.      + .+++|++|+|+++++..++.+++++||.|++++|.|+.+.  ..+. ..|++++.++
T Consensus        87 G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~--~~~~~~~g~~~v~v~  164 (468)
T PLN02450         87 GLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFD--RDLKWRTGVEIVPIH  164 (468)
T ss_pred             ChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchH--HHHhhcCCcEEEEEe
Confidence            456788888888852      1 3455999999999999999999999999999999776653  2333 5799999999


Q ss_pred             CCC--CCCCChHHHHHHHhcc--CCCCceEEEEEecCCCcccccch---HHHHHHhhhcCCCcEEEEecccccCcc---e
Q 015729          115 SDW--GEGAKLDVLASKLAAD--TAHTIKAICIVHNETATGVTNNL---SKVRKLLDEYRHPALFLVDGVSSICAI---D  184 (401)
Q Consensus       115 ~~~--~~~~d~~~le~~~~~~--~~~~~~~i~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~li~D~a~~~~~~---~  184 (401)
                      ++.  +..+|++++++++.+.  .+.+++++++++|+||||.+++.   ++|.++|++  +|++||+|++|+....   +
T Consensus       165 ~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~--~~~~iI~DE~Y~~~~f~~~~  242 (468)
T PLN02450        165 CSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITA--KNIHLISDEIYSGTVFDSPG  242 (468)
T ss_pred             cCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHH--CCcEEEEEccccccccCCCC
Confidence            853  4456889999887641  11368999999999999999974   567788888  9999999999873211   1


Q ss_pred             e----cc---------CcccceEEEecCCCccc-CCCcceEEEecHHH-HHHhccCCCCccccchHHHHHHhhcCCCCCC
Q 015729          185 F----RM---------DEWGIDVALTGSQKALS-LPTGMGIVCASPKA-LEASKTAKSVRVFFDWKDYIKFYNLGTFWPY  249 (401)
Q Consensus       185 ~----~~---------~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  249 (401)
                      +    ..         +.....+++.|.+|.++ .+..+|+++++++. .+.+...                  . .+. 
T Consensus       243 ~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~------------------~-~~~-  302 (468)
T PLN02450        243 FVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKM------------------S-SFG-  302 (468)
T ss_pred             cccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHH------------------h-hcC-
Confidence            1    11         01235688999999985 44567999997554 3322211                  0 001 


Q ss_pred             CCcHHHHHHHHHHHHH--HHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCC------HHH
Q 015729          250 TPSIQLLYGLRAALDL--IFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN------SSE  321 (401)
Q Consensus       250 ~~~~~~~~a~~~al~~--~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  321 (401)
                      ..+.....++..+++.  +.+..+++.++++.+.++.+.+.|++.|+++..+    ..+.++|+.++...+      ..+
T Consensus       303 ~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~gi~~~~~----~~g~flwi~l~~~~~~~~~~~~~~  378 (468)
T PLN02450        303 LVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKCLKS----NAGLFCWVDMRHLLKSNTFEAEME  378 (468)
T ss_pred             CCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC----CceEEEEEEchHhcCcCCchHHHH
Confidence            1333333333333321  1111245667888888889999998888776543    355688888864322      235


Q ss_pred             HHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          322 IVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       322 l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      +.+.|.++.||.+.||...  ...+++||++.. .+++++++++++|++++++..
T Consensus       379 l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~-~~~~~l~~~l~ri~~~l~~~~  432 (468)
T PLN02450        379 LWKKIVYEVKLNISPGSSCHCTEPGWFRVCFAN-MSEETLDLAMKRLKSFVESDS  432 (468)
T ss_pred             HHHHHHHhCCEEEeCccccCCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHHhcc
Confidence            6677776679999999542  235789997764 678999999999999987654

>PRK03321 putative aminotransferase; Provisional

Probab=99.96  E-value=7.6e-27  Score=219.67  Aligned_cols=310  Identities=14%  Similarity=0.082  Sum_probs=221.3

Q ss_pred             CcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcch
Q 015729           17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFS   96 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~   96 (401)
                      +..+++.+.+++.+.......+. .....++++.++++++.++. ++++++|+++++..++..++++||+|+++.+.+..
T Consensus        33 ~~~~~~~~~~a~~~~~~~~~~y~-~~g~~~lr~~ia~~~~~~~~-~I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~  110 (352)
T PRK03321         33 PFGPLPSVRAAIARAAAGVNRYP-DMGAVELRAALAEHLGVPPE-HVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEA  110 (352)
T ss_pred             CCCCCHHHHHHHHHHHHhcCcCC-CCcHHHHHHHHHHHhCcCHH-HEEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHH
Confidence            34466788888876443222222 24578999999999997654 49999999999998888889999999999886543


Q ss_pred             HHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEec
Q 015729           97 LLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDG  176 (401)
Q Consensus        97 ~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~  176 (401)
                      +  ...++..|++++.++.++++.+|++++++.++.    +++++++++++||||.++|.++|.++|+.++++++||+|+
T Consensus       111 ~--~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~----~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De  184 (352)
T PRK03321        111 Y--PILVQVAGATPVQVPLTPDHTHDLDAMAAAITD----RTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDE  184 (352)
T ss_pred             H--HHHHHHcCCEEEEccCCCCCCCCHHHHHHhhcc----CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEec
Confidence            3  345678899999999886677899999998863    5689999999999999999999999999855799999999


Q ss_pred             ccccCcce------ecc-CcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCC
Q 015729          177 VSSICAID------FRM-DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP  248 (401)
Q Consensus       177 a~~~~~~~------~~~-~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  248 (401)
                      +|......      +.. ......+++.|.+|.++ .+.++|++++++++.+.+....                 .   .
T Consensus       185 ~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~-----------------~---~  244 (352)
T PRK03321        185 AYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHPEVIAALRKVA-----------------V---P  244 (352)
T ss_pred             hHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCHHHHHHHHHhc-----------------C---C
Confidence            98633211      111 11234577889999984 2334799999998887765321                 0   1


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHh
Q 015729          249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQ  328 (401)
Q Consensus       249 ~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  328 (401)
                      ++.+.....++.+++...  ..+.+..++..+.++.+.+.|++.|+.+..+     .+.++++.++.  +..++.+.|.+
T Consensus       245 ~~~s~~~q~~a~~~l~~~--~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~-----~g~~i~i~l~~--~~~~~~~~l~~  315 (352)
T PRK03321        245 FSVNSLAQAAAIASLAAE--DELLERVDAVVAERDRVRAALRAAGWTVPPS-----QANFVWLPLGE--RTADFAAAAAE  315 (352)
T ss_pred             CCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHCCCccCCC-----CCCEEEEeCCC--CHHHHHHHHHH
Confidence            234444444444444321  1234445555666677888888877654321     23567777742  57789999865


Q ss_pred             hCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          329 RYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       329 ~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                       .||.+.+.    ....+||++   .+.++.+++++++++++.
T Consensus       316 -~gI~v~~~----~~~~iRi~~---~~~~~~~~~~~al~~~~~  350 (352)
T PRK03321        316 -AGVVVRPF----AGEGVRVTI---GAPEENDAFLRAARAWRA  350 (352)
T ss_pred             -CCEEEEcc----CCCcEEEee---CCHHHHHHHHHHHHHHhc
Confidence             49999862    234699975   379999999999998764

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=1.5e-26  Score=217.98  Aligned_cols=316  Identities=15%  Similarity=0.109  Sum_probs=218.2

Q ss_pred             CcccccC--CCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCe
Q 015729            9 KNHLFVP--GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR   86 (401)
Q Consensus         9 ~~~~~~~--~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~   86 (401)
                      +.+.++-  .|..+++.+.+++.+.......+. .....++++.++++++.+++ ++++++|+++++..++.+++++||+
T Consensus        31 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~~~~lr~~ia~~~~~~~~-~I~it~G~~~al~~~~~~~~~~gd~  108 (357)
T PRK14809         31 DLVKLSSNENPHGPSPAAVEAIREAAERVHSYP-KASHADLTAALADRWDVSPE-QVWLANGGDGALDYLARAMLDPGDT  108 (357)
T ss_pred             ceeEecCCCCCCCCCHHHHHHHHHHHhhhhcCC-CCCHHHHHHHHHHHhCCCcc-eEEECCCHHHHHHHHHHHhcCCCCE
Confidence            3444544  356677778888776432222222 12356899999999998764 4999999999999999999999999


Q ss_pred             EEEEcCCcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhh
Q 015729           87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLD  164 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~  164 (401)
                      |++++|+|..+.  ..++..|++++.++++.  +..+|.+++++...     +++++++++|+||||.+++.+++.++++
T Consensus       109 V~v~~P~y~~~~--~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~k~i~l~~p~NPTG~~~s~~~~~~l~~  181 (357)
T PRK14809        109 VLVPDPGFAYYG--MSARYHHGEVREYPVSKADDFEQTADTVLDAYD-----GERIVYLTSPHNPTGSEIPLDEVEALAE  181 (357)
T ss_pred             EEEeCCChHHHH--HHHHHcCCeEEEEecccCcCCCcCHHHHHHhhc-----CCcEEEEeCCCCCCCcCCCHHHHHHHHH
Confidence            999999765433  45666788888888754  34556776666542     4689999999999999999999888888


Q ss_pred             hcCCCcEEEEecccccCcce---e-ccCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHH
Q 015729          165 EYRHPALFLVDGVSSICAID---F-RMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIK  239 (401)
Q Consensus       165 ~~~~~~~li~D~a~~~~~~~---~-~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (401)
                      .+..+++||+|++|......   . ........+++.|.+|.++ .+.++|++++++++.+++.....            
T Consensus       182 ~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~------------  249 (357)
T PRK14809        182 RTDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARVNT------------  249 (357)
T ss_pred             hCccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCHHHHHHHHHhCC------------
Confidence            74357899999998743221   1 1112234578899999985 34457999999998777654210            


Q ss_pred             HhhcCCCCCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCC
Q 015729          240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN  318 (401)
Q Consensus       240 ~~~~g~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  318 (401)
                              .+..+...   +.+++..+... .+++.++.++++++.+.+.|...++   .     ..+.+++++++   +
T Consensus       250 --------~~~~~~~~---~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~---~-----~~g~f~~~~~~---~  307 (357)
T PRK14809        250 --------PFAASELA---CRAGLAALDDDEHVERTVETARWAREYIREELDAPTW---E-----SAGNFVLAEVG---D  307 (357)
T ss_pred             --------CCCCCHHH---HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCccC---C-----CCCCEEEEECC---C
Confidence                    11233332   33333333322 2555666677777777777754321   1     13356777774   4


Q ss_pred             HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          319 SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      ..++.+.|.++ ||.+.+|.....++++||++.   +.+++++++++|+++++
T Consensus       308 ~~~~~~~l~~~-gv~v~~g~~f~~~~~iRls~~---~~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        308 ASAVAEAAQER-GVIVRDCTSFGLPECIRITCG---TREETERAVEVLNEVLA  356 (357)
T ss_pred             HHHHHHHHHHC-CEEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHhc
Confidence            67888888655 999999965444678999853   57899999999998764

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.96  E-value=1.5e-26  Score=221.64  Aligned_cols=327  Identities=12%  Similarity=0.082  Sum_probs=212.6

Q ss_pred             CcCChHHHHHHHccCcC------CCCCccHHHHHHHHHHHHHHHh------cCCCCceEEecCChhHHHHHHHhccCCCC
Q 015729           17 PVHIPDQVIRAMNRNNE------DYRSPAVPALTKTLLEDIKKIF------KTTSGTPFLIPTTGTGAWESALTNTLSPG   84 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~------~~~~~~~~~~~~~l~~~la~~~------g~~~~~~i~~~~g~t~a~~~~~~~~~~~g   84 (401)
                      +.++++.+.+++.+...      ....+.......++|+.+++++      +.++ +++++|+|+++|+..+ ..++.+|
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~-~~I~it~Ga~~al~~l-~~~~~~g  122 (409)
T PRK07590         45 TQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISA-DEIFISDGAKCDTGNI-LDIFGPD  122 (409)
T ss_pred             CCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCCh-hhEEECCCHHHHHHHH-HHhcCCC
Confidence            34456666776665322      1123333445668888888876      3334 5599999999999875 4567899


Q ss_pred             CeEEEEcCCcchHHHHHHHHHcCCc-----------EEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc
Q 015729           85 DRIISFLIGQFSLLWIDQQQRLNFN-----------VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        85 d~vl~~~~~~~~~~~~~~~~~~g~~-----------~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~  153 (401)
                      |+|++.+|+|+.+.  ..++..|++           ++.++++.++.+.++.     .+   ++++++++++|+||||.+
T Consensus       123 d~V~v~~P~Y~~~~--~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~-----~~---~~~k~i~l~nP~NPTG~~  192 (409)
T PRK07590        123 NTIAVTDPVYPVYV--DTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPEL-----PE---EKVDIIYLCFPNNPTGTV  192 (409)
T ss_pred             CEEEEeCCCCcchH--HHHHHcCCcccccccccccceeEeecccccCCcccC-----cc---cCceEEEEeCCCCCcCCc
Confidence            99999999887654  556777876           8888886543333321     11   367999999999999999


Q ss_pred             cch---HHHHHHhhhcCCCcEEEEecccccCcc----ee---ccCcc-cceEEEecCCCccc-CCCcceEEEecHHHHHH
Q 015729          154 NNL---SKVRKLLDEYRHPALFLVDGVSSICAI----DF---RMDEW-GIDVALTGSQKALS-LPTGMGIVCASPKALEA  221 (401)
Q Consensus       154 ~~l---~~i~~l~~~~~~~~~li~D~a~~~~~~----~~---~~~~~-~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~  221 (401)
                      ++.   ++|.++|++  +|++||+|++|.....    +.   ..... ...+++.|.+|.++ .+..+|++++++++++.
T Consensus       193 ~s~~~~~~l~~~a~~--~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~~~li~~  270 (409)
T PRK07590        193 LTKEQLKAWVDYAKE--NGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVPKELKGK  270 (409)
T ss_pred             CCHHHHHHHHHHHHH--cCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEEEEcCHHHhhh
Confidence            985   457777888  9999999999874321    11   11111 24577899999984 34557999999988764


Q ss_pred             hccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Q 015729          222 SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKE  301 (401)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  301 (401)
                      +......    .............  ..+.+.....++.+++..-....+++.+++++++++.+.+.|++.|+.+..+  
T Consensus       271 ~~~~~~~----~~~~~~~~~~~~~--~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~--  342 (409)
T PRK07590        271 TSDGEGV----SLNSLWNRRQSTK--FNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESAGFEVYGG--  342 (409)
T ss_pred             ccccchh----hhHHHHHHHHhhc--ccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceecC--
Confidence            3211000    0000000000010  1123333333333333211112356677888888999999998887665432  


Q ss_pred             ccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                        ..+.++|+.+|++.+..++...|.+++||.+.+|...  ...+++||++..  +++++++++++|.++
T Consensus       343 --~g~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~--~~~~l~~~l~rl~~~  408 (409)
T PRK07590        343 --VNAPYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFG--SRENVLEAMERIKKA  408 (409)
T ss_pred             --CcceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccC--CHHHHHHHHHHHHhh
Confidence              2346888999876777888888877679999998432  224689998543  789999999999765

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.96  E-value=1.6e-26  Score=224.50  Aligned_cols=303  Identities=14%  Similarity=0.107  Sum_probs=207.0

Q ss_pred             HHHHHHHHHHHHHhcC------C-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEe
Q 015729           42 ALTKTLLEDIKKIFKT------T-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVE  114 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~------~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~  114 (401)
                      ....++|+.++++++.      + .+++|++++|+++|+..++.++++|||.|++++|.|+.+. ..+....|++++.++
T Consensus        94 ~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~-~~~~~~~G~~vv~v~  172 (496)
T PLN02376         94 HGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFD-RDLRWRTGVEIIPVP  172 (496)
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchH-HHHHhhCCCEEEEEe
Confidence            3456788888887761      1 3356999999999999999999999999999999877654 223335899999999


Q ss_pred             CCC--CCCCChHHHHHHHhc--cCCCCceEEEEEecCCCcccccch---HHHHHHhhhcCCCcEEEEecccccCcc---e
Q 015729          115 SDW--GEGAKLDVLASKLAA--DTAHTIKAICIVHNETATGVTNNL---SKVRKLLDEYRHPALFLVDGVSSICAI---D  184 (401)
Q Consensus       115 ~~~--~~~~d~~~le~~~~~--~~~~~~~~i~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~li~D~a~~~~~~---~  184 (401)
                      ++.  +..+|++++++++..  ....++|++++++|+||||.+++.   ++|.++|++  +|++||+|++|+....   .
T Consensus       173 ~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~--~~i~lI~DEiY~~~~f~~~~  250 (496)
T PLN02376        173 CSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTR--KNIHLVVDEIYAATVFAGGD  250 (496)
T ss_pred             CCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHH--cCCEEEEEcCccccccCCCC
Confidence            853  457899999876532  111478999999999999999984   557788888  9999999999875321   1


Q ss_pred             e-c---c----C--cc--cceEEEecCCCccc-CCCcceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCC
Q 015729          185 F-R---M----D--EW--GIDVALTGSQKALS-LPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT  250 (401)
Q Consensus       185 ~-~---~----~--~~--~~di~~~s~~K~l~-g~~g~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  250 (401)
                      + .   .    +  ..  ...+++.|.+|.++ .+.++|++++. +.+.+.+...                  ..  .+.
T Consensus       251 ~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~------------------~~--~~~  310 (496)
T PLN02376        251 FVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKM------------------SS--FGL  310 (496)
T ss_pred             cccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHH------------------hh--cCC
Confidence            1 1   1    0  00  12345789999984 34557999985 4443322211                  00  011


Q ss_pred             CcHHHHHHHHHHHHH--HHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCC-------HHH
Q 015729          251 PSIQLLYGLRAALDL--IFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN-------SSE  321 (401)
Q Consensus       251 ~~~~~~~a~~~al~~--~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  321 (401)
                      .+.....++.+.+..  +.+..+.+.++++.++.+.+.+.|++.|+++..+    ..+.++|+.++...+       ..+
T Consensus       311 vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~~~----~aG~flwi~l~~~~~~~~~~~~e~~  386 (496)
T PLN02376        311 VSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTS----NAGLFAWMDLRHLLRDRNSFESEIE  386 (496)
T ss_pred             CCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC----CceEEEEEEchhhhccCCchhHHHH
Confidence            333333333333321  1111234456777888888888998878776553    355788998864322       256


Q ss_pred             HHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          322 IVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       322 l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      +.+.|.++.||.+.+|...  ...+++||++.. .++++++.++++|++++++
T Consensus       387 l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~-~~~~~l~~al~rl~~~l~~  438 (496)
T PLN02376        387 LWHIIIDKVKLNVSPGSSFRCTEPGWFRICFAN-MDDDTLHVALGRIQDFVSK  438 (496)
T ss_pred             HHHHHHHcCCEEEeCccccCCCCCCEEEEEeeC-CCHHHHHHHHHHHHHHHHH
Confidence            8888887779999999543  345799997654 5789999999999998864

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.96  E-value=4.6e-26  Score=218.86  Aligned_cols=303  Identities=13%  Similarity=0.089  Sum_probs=210.2

Q ss_pred             HHHHHHHHHHHHHhcC------C-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEe
Q 015729           42 ALTKTLLEDIKKIFKT------T-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVE  114 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~------~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~  114 (401)
                      ....++|+.++++++.      + .++++++++|+++|++.++.+++.|||.|+++.|.|+++. ..+..+.|++++.|+
T Consensus        95 ~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~-~~~~~~~g~~vv~v~  173 (447)
T PLN02607         95 HGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFD-RDLRWRTGVKIVPIH  173 (447)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchH-HHHHhcCCcEEEEEe
Confidence            3466788888887752      1 3356999999999999998889999999999999776654 233335789999998


Q ss_pred             CCCC--CCCChHHHHHHHhc--cCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEEEEecccccCcc---e
Q 015729          115 SDWG--EGAKLDVLASKLAA--DTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAI---D  184 (401)
Q Consensus       115 ~~~~--~~~d~~~le~~~~~--~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~~~~---~  184 (401)
                      ++..  ..+|++++++++++  ..+.++|++++++|+||||.+++   +++|.++|++  +|+++|+|++|+....   +
T Consensus       174 ~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~--~~i~lI~DEiYa~~~f~~~~  251 (447)
T PLN02607        174 CDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVR--KNIHLVSDEIYSGSVFSASE  251 (447)
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHH--CCCEEEEeccccccccCCCC
Confidence            8754  35799999998864  22247899999999999999997   5678888998  9999999999874321   1


Q ss_pred             e-cc-------C--c-ccceEEEecCCCccc-CCCcceEEEe-cHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCC
Q 015729          185 F-RM-------D--E-WGIDVALTGSQKALS-LPTGMGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP  251 (401)
Q Consensus       185 ~-~~-------~--~-~~~di~~~s~~K~l~-g~~g~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  251 (401)
                      + ..       .  . ....+++.|.+|.|+ .+.++|++++ ++++...+...                  . .+. ..
T Consensus       252 f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~------------------~-~~~-~~  311 (447)
T PLN02607        252 FVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM------------------S-SFT-LV  311 (447)
T ss_pred             cccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHH------------------h-hcC-CC
Confidence            1 00       0  1 223467889999984 3345699998 55554443321                  0 001 12


Q ss_pred             cHHHHHHHHHHHHH--HHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCC------CHHHHH
Q 015729          252 SIQLLYGLRAALDL--IFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI------NSSEIV  323 (401)
Q Consensus       252 ~~~~~~a~~~al~~--~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~  323 (401)
                      +.....++...+..  +.+.-++..++++.+..+.+.+.|++.|+++..+    ..+.++|+++++..      ...++.
T Consensus       312 s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~~~~----~ag~fvw~~L~~~~~~~~~~~e~~l~  387 (447)
T PLN02607        312 SSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECLKG----NAGLFCWMNLSPLLETPTREGELALW  387 (447)
T ss_pred             CHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccC----CeeEEEEEEchHhhcCCCchhHHHHH
Confidence            22222222223221  1111244567777888888999999888776543    35678999986422      123677


Q ss_pred             HHHHhhCCeEEccCCC--CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          324 RRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       324 ~~L~~~~~i~v~~g~~--~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      +.|.++.||.+.+|..  ....+++||++.. .++++++.++++|.+++++
T Consensus       388 ~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~-~~~~~l~~gl~Ri~~~l~~  437 (447)
T PLN02607        388 DSILREVKLNISPGSSCHCSEPGWFRVCFAN-MSEDTLEVALKRIHRFMDR  437 (447)
T ss_pred             HHHHHhCCEEEcCccccCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Confidence            7777767999999954  3346899996654 6799999999999999864

>PRK06855 aminotransferase; Validated

Probab=99.96  E-value=5e-26  Score=219.05  Aligned_cols=325  Identities=12%  Similarity=0.025  Sum_probs=217.4

Q ss_pred             cCChHHHHHHHccCcC--CCCCccHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEE
Q 015729           18 VHIPDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISF   90 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   90 (401)
                      .++|+.+.+++.+...  ....|.......++|+.+++++    |.+ .+++|++|+|+++|+..++. ++.+||.|++.
T Consensus        47 ~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~-l~~~Gd~Vlv~  125 (433)
T PRK06855         47 EKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG-LLRREARVIGP  125 (433)
T ss_pred             CCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH-hcCCCCeEEEe
Confidence            3666667766665321  1123444455668888888877    332 34569999999999998874 78999999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccch---HHHHHHhhh
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLLDE  165 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l---~~i~~l~~~  165 (401)
                      .|.|+.+.. ......|++++.+++++  ++.+|++++++.++..  .+++++++++|+||||.+++.   ++|.++|++
T Consensus       126 ~P~Y~~~~~-~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~--~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~  202 (433)
T PRK06855        126 SPAYSTHSS-AEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYN--PSIAGILLINPDNPTGAVYPKEILREIVDIARE  202 (433)
T ss_pred             CCCCchHHH-HHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcC--CCceEEEEECCCCCCCcCCCHHHHHHHHHHHHH
Confidence            998876431 12344588888888764  3468999999998642  256899999999999999984   557778888


Q ss_pred             cCCCcEEEEecccccCcce----e---ccCcccceEEEecCCCccc-CCCcceEEEec-----H---HHHHHhccCCCCc
Q 015729          166 YRHPALFLVDGVSSICAID----F---RMDEWGIDVALTGSQKALS-LPTGMGIVCAS-----P---KALEASKTAKSVR  229 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~~~----~---~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~-----~---~~~~~~~~~~~~~  229 (401)
                        +|++||+|++|......    .   .....+..+++.|.+|.++ .+..+|++++.     +   +..+.+....   
T Consensus       203 --~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~---  277 (433)
T PRK06855        203 --YDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAK---  277 (433)
T ss_pred             --cCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhh---
Confidence              99999999998643211    1   1111123488999999995 44567999973     2   1122221100   


Q ss_pred             cccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHH-HhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCce
Q 015729          230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-EEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDT  307 (401)
Q Consensus       230 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~-~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~  307 (401)
                                  . .   ...++.....++..+++.-. +..+++.+++++++.+.+.+.|++. |+.+..+    ..+.
T Consensus       278 ------------~-~---~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p----~gg~  337 (433)
T PRK06855        278 ------------M-I---EVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLKVNRT----NGAF  337 (433)
T ss_pred             ------------c-c---ccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccCC----CeeE
Confidence                        0 0   11133333333333332100 1125667788888889999999876 6554443    3457


Q ss_pred             eEEEEcCCCC---------------------------CHHHHHHHHHhhCCeEEccCCCC-CCCcEEEEeecccCCHHHH
Q 015729          308 VTAVIVPSHI---------------------------NSSEIVRRAWQRYNLSLGLGLNK-VAGKVFRIGHLGHLNELQL  359 (401)
Q Consensus       308 ~~~~~~~~~~---------------------------~~~~l~~~L~~~~~i~v~~g~~~-~~~~~~Ri~~~~~~~~~di  359 (401)
                      ++|+.+|++.                           +..+++..+.++.||.+.||... ..+..+||++.. .+++++
T Consensus       338 ~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~-~~~~~i  416 (433)
T PRK06855        338 YMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLLE-RDEEKF  416 (433)
T ss_pred             EEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEECC-CcHHHH
Confidence            8888887542                           34567767666679999999443 223469998765 689999


Q ss_pred             HHHHHHHHHHHHh
Q 015729          360 LGCLAGVEMILKD  372 (401)
Q Consensus       360 ~~~~~~i~~~l~~  372 (401)
                      ++++++|.+++++
T Consensus       417 ~~~~~~l~~~~~~  429 (433)
T PRK06855        417 EWIYQTLAEKIEE  429 (433)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999874

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.96  E-value=5.3e-26  Score=209.72  Aligned_cols=329  Identities=18%  Similarity=0.160  Sum_probs=257.0

Q ss_pred             CCCCCCCcccccCCCcCChHHHHHHHccCcCCCCC----ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            3 YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRS----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         3 ~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      ...++.+.||--+--..+-+++.+++.++.....+    .+..+...+|+++|++++|.+.   .++.++|-.|+..++.
T Consensus        41 ~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~---al~f~SGy~AN~~~i~  117 (388)
T COG0156          41 VLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEA---ALLFSSGFVANLGLLS  117 (388)
T ss_pred             eEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCc---EEEEcccchhHHHHHH
Confidence            45678889998887777888899999986544322    3456778899999999999987   6677788999999999


Q ss_pred             ccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCC--CceEEEEEecCCCcccccch
Q 015729           79 NTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAH--TIKAICIVHNETATGVTNNL  156 (401)
Q Consensus        79 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~--~~~~i~~~~~~n~tG~~~~l  156 (401)
                      ++.+++|-|+.....|-|..  .-++..+++.+....+     |+++||+.+.+....  +.++|+...+.++.|.+.|+
T Consensus       118 ~l~~~~dli~~D~lnHASii--dG~rls~a~~~~f~Hn-----D~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL  190 (388)
T COG0156         118 ALLKKGDLIFSDELNHASII--DGIRLSRAEVRRFKHN-----DLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPL  190 (388)
T ss_pred             HhcCCCcEEEEechhhhhHH--HHHHhCCCcEEEecCC-----CHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCH
Confidence            99999998888888777754  5577788888888764     899999999762211  45788888999999999999


Q ss_pred             HHHHHHhhhcCCCcEEEEecccccCcce---------eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCC
Q 015729          157 SKVRKLLDEYRHPALFLVDGVSSICAID---------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS  227 (401)
Q Consensus       157 ~~i~~l~~~~~~~~~li~D~a~~~~~~~---------~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~  227 (401)
                      ++|.+++++  |+.++++|++|+.|.+-         +......+||++.+.+|.|+ ..| |++.++....+.+.....
T Consensus       191 ~~l~~L~~k--y~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlG-s~G-g~v~g~~~~~d~L~~~ar  266 (388)
T COG0156         191 PELVELAEK--YGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALG-SSG-GYIAGSAALIDYLRNRAR  266 (388)
T ss_pred             HHHHHHHHH--hCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhc-ccC-ceeeCcHHHHHHHHHhCC
Confidence            999999999  99999999999988653         12222346899999999994 665 899999998887765422


Q ss_pred             CccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCce
Q 015729          228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT  307 (401)
Q Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  307 (401)
                      ..                -|..+.++..+++..++++.+.+.  ...+++.+++...++..+...|+.+...    .+ .
T Consensus       267 ~~----------------ifStalpP~~aaa~~~al~~l~~~--~~~r~~L~~~~~~~~~~~~~~~~~~~~s----~s-~  323 (388)
T COG0156         267 PF----------------IFSTALPPAVAAAALAALRILEEG--PERRERLQELAAFFRSLLKALGLVLLPS----ES-P  323 (388)
T ss_pred             ce----------------eccCCCCHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHhcCCccCCC----CC-C
Confidence            11                123457777888899999988864  5788899999999997777777776442    23 3


Q ss_pred             eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCC---cEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAG---KVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       308 ~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~---~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      ++.+.+.+...+..++..|+++ ||.+.+..+|.-+   ..+|+++...+|++||+++++++.++
T Consensus       324 I~pv~~gd~~~a~~~s~~l~~~-Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         324 IIPVILGDEERALEASRALLEE-GIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             eeeeEeCCHHHHHHHHHHHHHC-CeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence            5556664444577888999888 9999877664322   45999999999999999999998765

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.96  E-value=6.9e-26  Score=216.59  Aligned_cols=322  Identities=15%  Similarity=0.084  Sum_probs=218.5

Q ss_pred             CChHHHHHHHccCcCC---CCCc--cHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           19 HIPDQVIRAMNRNNED---YRSP--AVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~---~~~~--~~~~~~~~l~~~la~~~g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      +.++.+.+++.+....   .+.+  +..++.+++.+.+++.+|.+ .++++++++|+++|+..++.+++++||+|++++|
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vl~~~p  125 (402)
T PRK06107         46 DTPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAP  125 (402)
T ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEecC
Confidence            3456666666653221   1111  22344455555555556664 3456999999999999999888999999999999


Q ss_pred             CcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccch---HHHHHHhhhcC
Q 015729           93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLLDEYR  167 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l---~~i~~l~~~~~  167 (401)
                      .|+.+.  ......+.+++.++++.  ++.+|++++++.+.    ++++++++++|+||||.+++.   ++|+++|++  
T Consensus       126 ~y~~y~--~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~--  197 (402)
T PRK06107        126 YWVSYP--DMVLANDGTPVIVACPEEQGFKLTPEALEAAIT----PRTRWLILNAPSNPTGAVYSRAELRALADVLLR--  197 (402)
T ss_pred             CCcCHH--HHHHHcCCEEEEecCCcccCCCCCHHHHHhhcC----cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHH--
Confidence            766553  34556677888888753  34578999999886    356899999999999999975   556777788  


Q ss_pred             C-CcEEEEecccccCcc---e---e-cc--CcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHH
Q 015729          168 H-PALFLVDGVSSICAI---D---F-RM--DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKD  236 (401)
Q Consensus       168 ~-~~~li~D~a~~~~~~---~---~-~~--~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~  236 (401)
                      + ++++|+|++|+....   +   + ..  ...+..+++.|.+|.++ .+.++|+++.++++.+.+.....         
T Consensus       198 ~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~---------  268 (402)
T PRK06107        198 HPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPADLIAAINKLQS---------  268 (402)
T ss_pred             cCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCHHHHHHHHHHHH---------
Confidence            7 999999999863211   1   0 11  11135678889999984 23346999999998776654211         


Q ss_pred             HHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcC-
Q 015729          237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVP-  314 (401)
Q Consensus       237 ~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-  314 (401)
                          .     ...+++.....++..+++. ....+++.++.+.++++.+.+.|++. |+.+..+    ..+.++|+.++ 
T Consensus       269 ----~-----~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p----~gg~~~~~~~~~  334 (402)
T PRK06107        269 ----Q-----SSSCPSSISQAAAAAALNG-DQSFVTESVAVYKQRRDYALALLNAIPGLSCLVP----DGAFYLYVNCAG  334 (402)
T ss_pred             ----h-----cccCCChHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCC----CcceEEeeeccc
Confidence                0     0112444433444444421 11125667778888888999999886 7666543    24556777652 


Q ss_pred             -------CCC---CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          315 -------SHI---NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       315 -------~~~---~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                             .+.   +..++...|.+++||.+.+|......+++||++..  +++++++++++|.+.++++
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~~--~~e~l~~~l~~l~~~l~~~  401 (402)
T PRK06107        335 LIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIAT--SLETLEEACARIERAVAAL  401 (402)
T ss_pred             ccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCC--CHHHHHHHHHHHHHHHHhc
Confidence                   221   45677777766679999999654446799998875  7999999999999988764

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=1.1e-26  Score=218.07  Aligned_cols=284  Identities=15%  Similarity=0.120  Sum_probs=206.1

Q ss_pred             HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCC-CeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCC
Q 015729           44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG-DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAK  122 (401)
Q Consensus        44 ~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~g-d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d  122 (401)
                      ..++++.+++++|.+++ +|++++|+++++..++.+++++| |+|+++.|+|..+  ...++..|++++.++.+.++.+|
T Consensus        59 ~~~l~~~~a~~~g~~~~-~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y--~~~~~~~G~~~~~v~~~~~~~~d  135 (351)
T PRK01688         59 PKAVIENYAAYAGVKPE-QVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMY--SVSAETIGVEIRTVPTLDNWQLD  135 (351)
T ss_pred             hHHHHHHHHHHhCCCHH-HEEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHH--HHHHHHcCCEEEEeecCCCCCCC
Confidence            46899999999998765 49999999999999999988887 8999999976543  35678899999999998778899


Q ss_pred             hHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCccee---c-cCcccceEEEec
Q 015729          123 LDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF---R-MDEWGIDVALTG  198 (401)
Q Consensus       123 ~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~---~-~~~~~~di~~~s  198 (401)
                      ++++++++.     +++++++++|+||||.+.+.+++.++++..+.+++||+|++|.......   + .......+++.|
T Consensus       136 ~~~l~~~~~-----~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rS  210 (351)
T PRK01688        136 LPAIADNLD-----GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLVILRT  210 (351)
T ss_pred             HHHHHHhcc-----CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCCEEEEec
Confidence            999998773     4689999999999999999998888887633468999999986443111   1 122345688899


Q ss_pred             CCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHH
Q 015729          199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE  276 (401)
Q Consensus       199 ~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~  276 (401)
                      .+|++ |.+|  +|+++++++.++.+.....                    +++.+.....++.++++.-..+.+++.++
T Consensus       211 fSK~~-glaGlRiGy~i~~~~~i~~l~~~~~--------------------~~~v~~~~~~~a~~~L~~~~~~~~~~~~~  269 (351)
T PRK01688        211 LSKAF-ALAGLRCGFTLANEEVINLLLKVIA--------------------PYPLSTPVADIAAQALSPQGIAAMRERVA  269 (351)
T ss_pred             chHhh-cCHHHHHhHHhCCHHHHHHHHhccC--------------------CCCCCHHHHHHHHHHHhcchHHHHHHHHH
Confidence            99988 4555  5999999998877764321                    11233322222223332110112456667


Q ss_pred             HHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC-CCCcEEEEeecccC
Q 015729          277 RHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK-VAGKVFRIGHLGHL  354 (401)
Q Consensus       277 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~-~~~~~~Ri~~~~~~  354 (401)
                      ++.+.++++.+.|+++ +++...+.    ...++++.++   +..++.+.|.++ ||.++.+... ...+++||++.   
T Consensus       270 ~~~~~r~~l~~~L~~~~~~~~~~ps----~~nfi~~~~~---~~~~l~~~L~~~-gi~vr~~~~~~~~~~~iRis~~---  338 (351)
T PRK01688        270 EINANRQWLIAALKEIPCVEQVFDS----ETNYILARFT---ASSAVFKSLWDQ-GIILRDQNKQPGLSNCLRITIG---  338 (351)
T ss_pred             HHHHHHHHHHHHHHhCCCCCeECCC----CCcEEEEEcC---CHHHHHHHHHHC-CeEEEECCCcCCCCCeEEEeCC---
Confidence            7778888999999887 65422221    2346777774   567899999866 9999876432 23568999754   


Q ss_pred             CHHHHHHHHHHHH
Q 015729          355 NELQLLGCLAGVE  367 (401)
Q Consensus       355 ~~~di~~~~~~i~  367 (401)
                      +++|.++++++|+
T Consensus       339 ~~~e~~~l~~al~  351 (351)
T PRK01688        339 TREECQRVIDALR  351 (351)
T ss_pred             CHHHHHHHHHhhC
Confidence            6899999998873

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.96  E-value=7.4e-26  Score=213.89  Aligned_cols=334  Identities=15%  Similarity=0.102  Sum_probs=229.5

Q ss_pred             CCCCCCCCcccccCCCcCChHHHHHHHccCc-------CCCCCcc----HHHHHHHHHHHHHHHhcCCCCceEEecCChh
Q 015729            2 DYMYAPGKNHLFVPGPVHIPDQVIRAMNRNN-------EDYRSPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGT   70 (401)
Q Consensus         2 ~~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~-------~~~~~~~----~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t   70 (401)
                      ++..+..+.||..+..+++.+++.+++.++.       .+..+..    ..+...++++.+++++|.+.   .++.++|+
T Consensus         5 ~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~---~l~~~sG~   81 (370)
T PRK05937          5 LSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPE---AFIVPSGY   81 (370)
T ss_pred             ceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCe---EEEECChH
Confidence            4667889999999999999999999998873       2222222    56789999999999999864   34555566


Q ss_pred             HHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCC--CCceEEEEEecCC
Q 015729           71 GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA--HTIKAICIVHNET  148 (401)
Q Consensus        71 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~--~~~~~i~~~~~~n  148 (401)
                      .|+..++..+.+++|.|++....|.+.. ... +......+.++     ..|++++++++++...  +.+.++++++++|
T Consensus        82 ~a~~~~~~~~~~~~d~ii~d~~~H~sv~-~~~-~~~~~~~~~~~-----~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s  154 (370)
T PRK05937         82 MANLGLCAHLSSVTDYVLWDEQVHISVV-YSL-SVISGWHQSFR-----HNDLDHLESLLESCRQRSFGRIFIFVCSVYS  154 (370)
T ss_pred             HHHHHHHHHhCCCCCEEEEEhhhhHHHH-HHH-HHcCCceEEec-----CCCHHHHHHHHHhhhccCCCcEEEEEecCCC
Confidence            7776655555567777777667666554 222 22222222222     3489999999874210  1345778899999


Q ss_pred             CcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccC----ccc---ceEEEecCCCcccCCCcceEEEecHHHHHH
Q 015729          149 ATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD----EWG---IDVALTGSQKALSLPTGMGIVCASPKALEA  221 (401)
Q Consensus       149 ~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~----~~~---~di~~~s~~K~l~g~~g~G~l~~~~~~~~~  221 (401)
                      ++|.+.|+++|.++|++  +|+++++|++|+.|.+..+..    .++   .++++.|.+|.+ |+.|.|+++. ++....
T Consensus       155 ~~G~i~pl~eI~~l~~~--~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~-g~~G~~vl~~-~~~~~~  230 (370)
T PRK05937        155 FKGTLAPLEQIIALSKK--YHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKAL-GSMGAALLSS-SEVKQD  230 (370)
T ss_pred             CCCCccCHHHHHHHHHH--cCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhh-hcCceEEEcC-HHHHHH
Confidence            99999999999999999  999999999999886654431    122   236677888987 5778776655 554333


Q ss_pred             hccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Q 015729          222 SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKE  301 (401)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  301 (401)
                      +..... ..               .+..+.++..++++.++++.+.+.+ +..+++..++.+++.+.|...+     .  
T Consensus       231 ~~~~~~-~~---------------~~s~~~~~~~~~a~~aal~~l~~~~-~~~~~~l~~l~~~l~~~l~~~~-----~--  286 (370)
T PRK05937        231 LMLNSP-PL---------------RYSTGLPPHLLISIQVAYDFLSQEG-ELARKQLFRLKEYFAQKFSSAA-----P--  286 (370)
T ss_pred             HHHhCC-CC---------------eecCCCCHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCCC-----C--
Confidence            321100 00               0122355666788899999887766 5567777788887777664321     0  


Q ss_pred             ccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCCCCCcc
Q 015729          302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLG  380 (401)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~~~~~~  380 (401)
                         . ....+.++ +.+..++.+.|.++ ||.+.....+ ..+.+||++..++|++|+|+++++|++++++++.-+-.+
T Consensus       287 ---~-~~~~i~~~-~~~~~~~~~~L~~~-gi~v~~~~~~-~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~~~~~~~  358 (370)
T PRK05937        287 ---G-CVQPIFLP-GISEQELYSKLVET-GIRVGVVCFP-TGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQKNVVIG  358 (370)
T ss_pred             ---C-CEEEEEeC-ChhHHHHHHHHHHC-CeeEEeeCCC-CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCcccc
Confidence               0 11234553 34567788888766 9988754333 345799999999999999999999999998876654443

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.96  E-value=2.3e-26  Score=215.41  Aligned_cols=317  Identities=13%  Similarity=0.045  Sum_probs=214.4

Q ss_pred             CCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcc
Q 015729           16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF   95 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~   95 (401)
                      .|..+++.+++++.+.......+.......++++.+++++| +  .++++++|||+|+..++.+++++||+|+++.+.|+
T Consensus         6 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~~a~~~g-~--~~~~~~~~gt~a~~~~~~~l~~~gd~v~~~~~~~~   82 (338)
T cd06502           6 TVTGPTPEMLEAMAAANVGDDVYGEDPTTAKLEARAAELFG-K--EAALFVPSGTAANQLALAAHTQPGGSVICHETAHI   82 (338)
T ss_pred             cCCCCCHHHHHHHHhcccCCcccCCCHHHHHHHHHHHHHhC-C--CeEEEecCchHHHHHHHHHhcCCCCeEEEecCcce
Confidence            36667888999988744322233345678899999999999 2  24888899999999999999999999999999877


Q ss_pred             hHHHH-HHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccC---CCCceEEEEEecCCCccccc---chHHHHHHhhhcCC
Q 015729           96 SLLWI-DQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT---AHTIKAICIVHNETATGVTN---NLSKVRKLLDEYRH  168 (401)
Q Consensus        96 ~~~~~-~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~---~~~~~~i~~~~~~n~tG~~~---~l~~i~~l~~~~~~  168 (401)
                      +.... ..++..|++++.++.+. +.+|++++++++++..   .++++++++++++|+ |.++   ++++|.++|++  +
T Consensus        83 ~~~~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~--~  158 (338)
T cd06502          83 YTDEAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISALAKE--N  158 (338)
T ss_pred             eeecCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHHHHHH--c
Confidence            64311 23455799999998765 5689999999987421   125799999999997 5443   56778999999  9


Q ss_pred             CcEEEEecccccCcc-----eeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhc
Q 015729          169 PALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL  243 (401)
Q Consensus       169 ~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (401)
                      |+++|+|++|..+..     .......++|+++.|.||+++ .+|.++++.++++.+.+.....            .+  
T Consensus       159 ~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~-~~~g~~~~~~~~~~~~~~~~~~------------~~--  223 (338)
T cd06502         159 GLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGG-APVGAVVVGNRDFIARARRRRK------------QA--  223 (338)
T ss_pred             CCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCC-CccceEEECCHHHHHHHHHHHH------------Hh--
Confidence            999999998743311     111112468899999999995 4443566778888776653210            00  


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCC-CHHHH
Q 015729          244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI-NSSEI  322 (401)
Q Consensus       244 g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l  322 (401)
                      +.  ..+.+..   ++.+++..+...++.+..+++.++++++.+.|+++|+.+..+    ..+ ++.+..+.+. ...++
T Consensus       224 ~~--~~~~~~~---~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~----~~~-~~~v~~~~~~~~~~~l  293 (338)
T cd06502         224 GG--GMRQSGF---LAAAGLAALENDLWLRRLRHDHEMARRLAEALEELGGLESEV----QTN-IVLLDPVEANAVFVEL  293 (338)
T ss_pred             CC--ChhhHHH---HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcCCCcccc----cCC-eEEEecCCccHHHHHH
Confidence            10  1112222   223333333333456677888889999999999987754332    233 4455553221 11233


Q ss_pred             HHHHHh--hCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          323 VRRAWQ--RYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       323 ~~~L~~--~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      .+.+.+  +.|+.+.+..    .+++||++...++++|++++++++++
T Consensus       294 ~~~l~~~~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         294 SKEAIERRGEGVLFYAWG----EGGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             HHHHHHhhhCCEEEEecC----CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence            333321  3488876542    27899999988899999999999864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.96  E-value=4.8e-26  Score=220.84  Aligned_cols=312  Identities=13%  Similarity=0.078  Sum_probs=220.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESD  116 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~  116 (401)
                      ..+...++++.+++++|.+..+ +.+++|+|++++.++.++ +.+||+|+++.+.|+++.  +..+++..|++++.++.+
T Consensus       110 ~~~~~~e~~~~la~l~g~~~~~-v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~  188 (447)
T PRK00451        110 TLQAIFEYQTMICELTGMDVAN-ASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYE  188 (447)
T ss_pred             HHHHHHHHHHHHHHHhCCCcce-EEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCC
Confidence            4455777888999999998654 889999999999888776 478999999999887765  334456689999999998


Q ss_pred             CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEE--ecccccCcceeccCcccceE
Q 015729          117 WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLV--DGVSSICAIDFRMDEWGIDV  194 (401)
Q Consensus       117 ~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~--D~a~~~~~~~~~~~~~~~di  194 (401)
                      ++ .+|++++++++++    ++++++++++ |+||.+.|+++|.++|++  +|+++++  |.. +.+... ...++++|+
T Consensus       189 ~~-~~d~~~l~~~i~~----~t~~v~l~~p-n~tG~v~~l~~I~~~a~~--~~~~~iv~~d~~-~~g~~~-~~~~~~~D~  258 (447)
T PRK00451        189 DG-VTDLEALEAAVDD----DTAAVVVQYP-NFFGVIEDLEEIAEIAHA--GGALFIVGVDPV-SLGLLK-PPGEYGADI  258 (447)
T ss_pred             CC-CCCHHHHHHhcCC----CeEEEEEECC-CCCCeeCCHHHHHHHHHH--CCCEEEEEcChH-HhccCC-CcccCCCCE
Confidence            77 8999999999974    5699999987 899999999999999999  9999998  544 334332 235678999


Q ss_pred             EEecCCCc-----ccCCCcceEEEecHHHHHHhccCCCCc---------cccch--HHHHHHhhcCCCCCCCCcHHHHHH
Q 015729          195 ALTGSQKA-----LSLPTGMGIVCASPKALEASKTAKSVR---------VFFDW--KDYIKFYNLGTFWPYTPSIQLLYG  258 (401)
Q Consensus       195 ~~~s~~K~-----l~g~~g~G~l~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~~~~g~~~~~~~~~~~~~a  258 (401)
                      +++|++|+     + +++|+|++++++++.+.+.+.....         +...+  .....+++.++....++......+
T Consensus       259 ~~~s~~k~~~~~~~-~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  337 (447)
T PRK00451        259 VVGEGQPLGIPLSF-GGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALA  337 (447)
T ss_pred             EEECCCcCCCCCCC-CCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHH
Confidence            99999885     4 4558999999999888764321100         00000  011112223331122222222233


Q ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEc-c
Q 015729          259 LRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLG-L  336 (401)
Q Consensus       259 ~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~-~  336 (401)
                      ...+++.+.+.|++++.+++.++++++++.|+++ |+++..  +.  ....+.+.++  .+..+++++|.++ ||... +
T Consensus       338 aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~--~~--~~~~~~v~~~--~~~~~~~~~L~~~-gi~~~~~  410 (447)
T PRK00451        338 AAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELFD--GP--FFNEFVVRLP--KPAEEVNEALLEK-GILGGYD  410 (447)
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEecC--CC--eEEEEEEecC--CCHHHHHHHHHhc-CCCCCcc
Confidence            3334555666789999999999999999999997 677652  11  1112334543  3578999999876 66532 1


Q ss_pred             C--CCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          337 G--LNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       337 g--~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      +  +.+...+++|+++..++|++|+++++++|++++
T Consensus       411 ~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        411 LGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             cccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            1  112224689999888889999999999998764

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.96  E-value=2.5e-26  Score=219.69  Aligned_cols=321  Identities=15%  Similarity=0.103  Sum_probs=212.0

Q ss_pred             CcCChHHHHHHHccCcCC------CCCccHHHHHHHHHHHHHHHh---cCCCCceEEecCChhHHHHHHHhccCCCCCeE
Q 015729           17 PVHIPDQVIRAMNRNNED------YRSPAVPALTKTLLEDIKKIF---KTTSGTPFLIPTTGTGAWESALTNTLSPGDRI   87 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~---g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~v   87 (401)
                      +.++++.+.+++.+....      ...+.......++++.+++++   +.++ +++++++|+++++..+ ..++.+||+|
T Consensus        44 ~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~~~~-d~I~it~Ga~~al~~l-~~l~~~gd~V  121 (402)
T TIGR03542        44 TQPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGRIDP-EEIFISDGAKCDVFRL-QSLFGSDNTV  121 (402)
T ss_pred             CCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcCCCH-HHEEECCCcHHHHHHH-HHhcCCCCEE
Confidence            345667777776653321      123434456778999999876   4444 5599999999999875 4567899999


Q ss_pred             EEEcCCcchHHHHHHHHHcCC-----------cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc-
Q 015729           88 ISFLIGQFSLLWIDQQQRLNF-----------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-  155 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~-  155 (401)
                      ++++|+|+.+.  ..++..|+           +++.++++....++++. ++   .   ++++++++++|+||||.+++ 
T Consensus       122 lv~~P~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~---~---~~~~~i~l~nP~NPTG~~~s~  192 (402)
T TIGR03542       122 AVQDPVYPAYV--DSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDL-PE---E---PKIDIIYLCSPNNPTGTVLTK  192 (402)
T ss_pred             EEeCCCCcchH--HHHHHcCCccccccccccceEEEeecchhhCCCCCc-cc---c---CCceEEEEeCCCCCCCccCCH
Confidence            99999877553  56778898           88888876543333332 11   1   35799999999999999998 


Q ss_pred             --hHHHHHHhhhcCCCcEEEEecccccCcc----eec---cCc-ccceEEEecCCCccc-CCCcceEEEecHHHHHHhcc
Q 015729          156 --LSKVRKLLDEYRHPALFLVDGVSSICAI----DFR---MDE-WGIDVALTGSQKALS-LPTGMGIVCASPKALEASKT  224 (401)
Q Consensus       156 --l~~i~~l~~~~~~~~~li~D~a~~~~~~----~~~---~~~-~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~  224 (401)
                        +++|.++|++  +|++||+|++|.....    +..   ... ....+++.|.+|.++ .+.++|++++++++......
T Consensus       193 ~~~~~l~~~a~~--~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i~~~~l~~~~~~  270 (402)
T TIGR03542       193 EQLKELVDYANE--HGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGWTVVPKELTYADGH  270 (402)
T ss_pred             HHHHHHHHHHHH--cCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEEEEecHHHhhcchh
Confidence              6678888888  9999999999874321    111   111 124577899999884 33457999998886511100


Q ss_pred             CCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhc---HHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Q 015729          225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG---LENVIERHRRLGKATRLAVEAWGLKNCTQKE  301 (401)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g---~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  301 (401)
                      ..       ......... ..  .++.+...   +.++...+....   +.+.++.++++++.+.+.|++.|+++..+  
T Consensus       271 ~~-------~~~~~~~~~-~~--~~~~s~~~---q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~--  335 (402)
T TIGR03542       271 SV-------IQDWERRQC-TK--FNGASYPV---QRAAEAAYAGEGLQPILEAISYYMENARILRKALEAAGFKVYGG--  335 (402)
T ss_pred             hH-------HHHHHHHhh-hc--ccCCCHHH---HHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhcCceecCC--
Confidence            00       000000000 10  11233322   222333332211   34556777888888999998877655432  


Q ss_pred             ccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~--~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                        ..+.++|+++|+..++.++...|.++.||.+.+|..  ....+++||++..  +++++++++++|+++
T Consensus       336 --~~~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~~  401 (402)
T TIGR03542       336 --EHAPYLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFG--KRENIVEACERIKEA  401 (402)
T ss_pred             --CceeEEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--CHHHHHHHHHHHHhh
Confidence              234588899987777889999988767999999853  2235789998654  789999999999875

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.96  E-value=2e-25  Score=210.77  Aligned_cols=333  Identities=14%  Similarity=0.078  Sum_probs=236.2

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCC--------Cc----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYR--------SP----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA   76 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~--------~~----~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~   76 (401)
                      ....++|+=-.+++.|++++.....+.+        .+    ....+...+.++..++||.+...  +-..||+.|+..+
T Consensus        50 ~~l~LiasEN~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~an--vqp~Sg~~An~~v  127 (493)
T PRK13580         50 SSLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEHAY--VQPHSGADANLVA  127 (493)
T ss_pred             cCceEecccccCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCccc--ccCCCcHHHHHHH
Confidence            4567778888889999999988443211        11    13344556788889999988743  4467889999999


Q ss_pred             HhccCCC-------------------------------CCeEEEEcCCc---chHHHHHHHHHcCCcEEEEeCCC-CCCC
Q 015729           77 LTNTLSP-------------------------------GDRIISFLIGQ---FSLLWIDQQQRLNFNVDVVESDW-GEGA  121 (401)
Q Consensus        77 ~~~~~~~-------------------------------gd~vl~~~~~~---~~~~~~~~~~~~g~~~~~v~~~~-~~~~  121 (401)
                      ..++++|                               ||+|+..+..+   .++.+..-......+.+..+++. .+.+
T Consensus       128 ~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~i  207 (493)
T PRK13580        128 FWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLL  207 (493)
T ss_pred             HHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcccCcc
Confidence            9998876                               79999887633   22221111111123455555554 4679


Q ss_pred             ChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccC------cccceEE
Q 015729          122 KLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD------EWGIDVA  195 (401)
Q Consensus       122 d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~------~~~~di~  195 (401)
                      |++++++.+.+    +++.+++++.+|. |...|+++|.++|++  +|+++++|++|+.|.+..+..      ..++|++
T Consensus       208 D~d~l~~~~~~----~~plvii~g~S~~-~~~~dl~~i~eia~~--~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~v  280 (493)
T PRK13580        208 DYDEIAALARE----FKPLILVAGYSAY-PRRVNFAKLREIADE--VGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIV  280 (493)
T ss_pred             CHHHHHHHHhh----cCCEEEEeCcccc-CCCcCHHHHHHHHHH--cCCEEEEECchhhceeccccchhhcCCCCCCcEE
Confidence            99999999985    4477888888887 557799999999999  999999999999987653331      1368999


Q ss_pred             EecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHH
Q 015729          196 LTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI  275 (401)
Q Consensus       196 ~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  275 (401)
                      ++|.||+|.||.| |++++++++.+.+....  .                +..+++....+++...++..+.+.+++..+
T Consensus       281 tgT~hKaL~GP~G-G~I~~~~~l~~~L~~a~--P----------------~i~gg~l~p~iAA~avAl~e~~~~ef~~y~  341 (493)
T PRK13580        281 TTTTHKTLRGPRG-GLVLAKKEYADAVDKGC--P----------------LVLGGPLPHVMAAKAVALAEARTPEFQKYA  341 (493)
T ss_pred             EeCChhhccCCCe-EEEEecHHHHHHHhhCC--C----------------cccCCCccHHHHHHHHHHHHHhCccHHHHH
Confidence            9999999987876 99999999877773211  1                112234444566666677766655557789


Q ss_pred             HHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCC-CCHHHHHHHHHhhCCeEEccCCCCCC------CcEEEE
Q 015729          276 ERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH-INSSEIVRRAWQRYNLSLGLGLNKVA------GKVFRI  348 (401)
Q Consensus       276 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~~~~~i~v~~g~~~~~------~~~~Ri  348 (401)
                      ++..+++++|++.|.+.|+.+....   ....++.+.+.+. .....+.+.|.+. ||.+.....|..      ...+||
T Consensus       342 ~~l~~Na~~La~~L~~~G~~vv~gg---TdshIV~V~lg~~~~~g~~a~~~L~e~-GI~vn~i~~Ptvp~g~~~~srLRI  417 (493)
T PRK13580        342 QQVVDNARALAEGFLKRGARLVTGG---TDNHLVLIDVTSFGLTGRQAESALLDA-GIVTNRNSIPSDPNGAWYTSGIRL  417 (493)
T ss_pred             HHHHHHHHHHHHHHHhcCCCccCCC---CCCCEEEEEeCCHHHHHHHHHHHHHHC-CeEEccccCCCCCCCCCCCceEEe
Confidence            9999999999999999999886421   1235666777432 2234666677665 999876543321      345999


Q ss_pred             eecc----cCCHHHHHHHHHHHHHHHHhc
Q 015729          349 GHLG----HLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       349 ~~~~----~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ++..    .++++|++++++.|.++++..
T Consensus       418 g~~A~ttrg~teedi~~iad~l~~~l~~~  446 (493)
T PRK13580        418 GTPALTTLGMGSDEMDEVAELIVKVLSNT  446 (493)
T ss_pred             ccchhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence            9887    456999999999999998754

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.95  E-value=6.8e-26  Score=216.08  Aligned_cols=323  Identities=17%  Similarity=0.150  Sum_probs=218.9

Q ss_pred             CChHHHHHHHccCcCC----CCCccHHHHHHHHHHHHHHHhcCC-----CCceEEecCChhHHHHHHHhccCCCCCeEEE
Q 015729           19 HIPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTT-----SGTPFLIPTTGTGAWESALTNTLSPGDRIIS   89 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~g~~-----~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~   89 (401)
                      +.++.+.+++.+....    ...+.......++|+.++++++..     +++++++++|+++++..++.+++.+||+|++
T Consensus        46 ~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vli  125 (394)
T PRK06836         46 PPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIV  125 (394)
T ss_pred             CCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhcCCCCEEEE
Confidence            4567788877653221    112223345667888888887521     3345999999999999999898999999999


Q ss_pred             EcCCcchHHHHHHHHHcCCcEEEEeCCCC-CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchH---HHHHHhhh
Q 015729           90 FLIGQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS---KVRKLLDE  165 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~---~i~~l~~~  165 (401)
                      ++++|..+  ...++..|++++.++.+++ +.+|++++++++++    +++++++++++||||.++|.+   +|.++|++
T Consensus       126 ~~p~~~~~--~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~----~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~  199 (394)
T PRK06836        126 FAPYFVEY--RFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITP----KTKAVIINSPNNPTGVVYSEETLKALAALLEE  199 (394)
T ss_pred             cCCCCccH--HHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCc----CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHH
Confidence            99976654  3567788999999998776 57899999999964    579999999999999999855   45666665


Q ss_pred             c----CCCcEEEEecccccCcce-----eccCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchH
Q 015729          166 Y----RHPALFLVDGVSSICAID-----FRMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWK  235 (401)
Q Consensus       166 ~----~~~~~li~D~a~~~~~~~-----~~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~  235 (401)
                      +    ++|++||+|+++......     .-.......+++.|.+|.++ .+.++|+++++++..+...-          .
T Consensus       200 ~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~----------~  269 (394)
T PRK06836        200 KSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDL----------V  269 (394)
T ss_pred             hhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhccCcceeeEEEecCHHHhhhHHH----------H
Confidence            2    269999999998643211     00112335788999999985 34458999998775321100          0


Q ss_pred             HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC
Q 015729          236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS  315 (401)
Q Consensus       236 ~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  315 (401)
                      ........... ....+.....   ++...+. .+  ...+++.++++.+.+.|++.|+.+..+    ..+.++|+.+|.
T Consensus       270 ~~~~~~~~~~~-~~~~~~~~q~---~~~~~l~-~~--~~~~~~~~~r~~l~~~L~~~g~~~~~~----~gg~~~~~~~~~  338 (394)
T PRK06836        270 AALVFANRILG-FVNAPALMQR---VVAKCLD-AT--VDVSIYKRNRDLLYDGLTELGFECVKP----QGAFYLFPKSPE  338 (394)
T ss_pred             HHHHHHhhccc-cccCCHHHHH---HHHHHhC-Ch--HHHHHHHHHHHHHHHHHHhCCCEeecC----CceEEEEEeCCC
Confidence            00000000000 0112222222   2222222 22  234567777888888888877765543    245677788765


Q ss_pred             CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          316 HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       316 ~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                       .+..++.+.|.++ ||.+.+|.....++++||++.  .++++++.++++|++++++
T Consensus       339 -~~~~~~~~~l~~~-gv~v~~g~~f~~~~~iRi~~~--~~~~~~~~~i~~l~~~l~~  391 (394)
T PRK06836        339 -EDDVAFCEKAKKH-NLLLVPGSGFGCPGYFRLSYC--VDTETIERSLPAFEKLAKE  391 (394)
T ss_pred             -CCHHHHHHHHHhC-CEEEECchhcCCCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence             4778888888655 999999965444678999886  4899999999999999865

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.95  E-value=3.8e-25  Score=209.76  Aligned_cols=336  Identities=10%  Similarity=0.043  Sum_probs=229.4

Q ss_pred             CCCCCcccccCCCcCChHHHHHHHccCcCCCC----CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc
Q 015729            5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT   80 (401)
Q Consensus         5 ~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~----~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~   80 (401)
                      .+.++.||--.....+-+++++++.++.....    .+.......++++++++++|.+.   .++.++|+.|+..++.++
T Consensus         2 ~f~s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e~---al~~~sG~~a~~~~i~~l   78 (392)
T PLN03227          2 NFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTES---AILYSDGASTTSSTVAAF   78 (392)
T ss_pred             CCcCcCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCCCc---EEEecCcHHHHHHHHHHh
Confidence            46778888888777788888888887553321    13334578899999999999874   455566666666788889


Q ss_pred             CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHH---HHhcc-------CCCCceEEEEEecCCCc
Q 015729           81 LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLAS---KLAAD-------TAHTIKAICIVHNETAT  150 (401)
Q Consensus        81 ~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~---~~~~~-------~~~~~~~i~~~~~~n~t  150 (401)
                      +++||.|++.++.|.+...  .+...+++++.++.+     |++.+++   .+...       ...++++|++..+.|++
T Consensus        79 ~~~GD~Vl~~~~~h~s~~~--~~~l~~~~~~~~~~~-----d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~  151 (392)
T PLN03227         79 AKRGDLLVVDRGVNEALLV--GVSLSRANVRWFRHN-----DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNT  151 (392)
T ss_pred             CCCCCEEEEeccccHHHHH--HHHHcCCeEEEeCCC-----CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCC
Confidence            9999999999998887642  234456666666644     3444444   33311       11357899999999999


Q ss_pred             ccccchHHHHHHhhhcCCCcEEEEecccccCcce---------eccC-cccceEEEecCCCcccCCCcceEEEecHHHHH
Q 015729          151 GVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID---------FRMD-EWGIDVALTGSQKALSLPTGMGIVCASPKALE  220 (401)
Q Consensus       151 G~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~---------~~~~-~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~  220 (401)
                      |.+.|+++|.++|++  +|+++|+|++|+++..-         ++.. ..++|++++|.+|++ ++.| |+++++++..+
T Consensus       152 G~i~~l~~i~~l~~~--~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~-g~~g-g~v~~~~~~~~  227 (392)
T PLN03227        152 GTLAPLKELVALKEE--FHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAF-GSVG-GMTVGSEEVVD  227 (392)
T ss_pred             CcccCHHHHHHHHHH--cCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhh-hccC-cEEecCHHHHH
Confidence            999999999999999  99999999999855321         1111 236799999999987 4554 78888888766


Q ss_pred             HhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCC
Q 015729          221 ASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK  300 (401)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  300 (401)
                      .+....                .+..+..+.++..+++..+++....+  .++..++.+++.+++++.|++.+++.....
T Consensus       228 ~~~~~~----------------~~~~~~~~~~p~~~~aa~~al~~~~~--~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~  289 (392)
T PLN03227        228 HQRLSG----------------SGYCFSASAPPFLAKADATATAGELA--GPQLLNRLHDSIANLYSTLTNSSHPYALKL  289 (392)
T ss_pred             HHHHhC----------------cCccccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            543211                11112233344444555555554433  256888899999999999987554422110


Q ss_pred             Cc------cCCceeEEEEcCCCCC---------HHHHHHHHHhhCCeEEcc-CC------CCCCCcEEEEeecccCCHHH
Q 015729          301 EE------WFSDTVTAVIVPSHIN---------SSEIVRRAWQRYNLSLGL-GL------NKVAGKVFRIGHLGHLNELQ  358 (401)
Q Consensus       301 ~~------~~~~~~~~~~~~~~~~---------~~~l~~~L~~~~~i~v~~-g~------~~~~~~~~Ri~~~~~~~~~d  358 (401)
                      ..      .....++.+.+.+...         ..++++.|.++ |+.+.+ +.      ...+...+|++.+..+|++|
T Consensus       290 rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~ee  368 (392)
T PLN03227        290 RNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSE-GVAVVSTGGHVKKFLQLVPPPCLRVVANASHTRED  368 (392)
T ss_pred             ccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHC-CCEEEecccccCCcCCCCCCceEEEEecCCCCHHH
Confidence            00      0123466677743211         24788888876 888753 21      11224569999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 015729          359 LLGCLAGVEMILKDV  373 (401)
Q Consensus       359 i~~~~~~i~~~l~~~  373 (401)
                      +|+++++|+++++++
T Consensus       369 i~~~~~~l~~~~~~~  383 (392)
T PLN03227        369 IDKLLTVLGEAVEAI  383 (392)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998765

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.95  E-value=6.2e-26  Score=230.95  Aligned_cols=319  Identities=13%  Similarity=0.044  Sum_probs=232.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChh----HHHHHHHhccCCC-CC----eEEEEcCCcchHHHHHHHHHcCCcE
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGT----GAWESALTNTLSP-GD----RIISFLIGQFSLLWIDQQQRLNFNV  110 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t----~a~~~~~~~~~~~-gd----~vl~~~~~~~~~~~~~~~~~~g~~~  110 (401)
                      +.+.+.++++.+++++|.+.   +.|+++++    +|+..++.+++++ ||    .|+++..+|.++.  ..+...|+++
T Consensus       566 ~~~~~~~~r~~la~i~g~~~---v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~--a~a~~~G~~v  640 (993)
T PLN02414        566 YQEMFEDLGDLLCEITGFDS---FSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNP--ASAAMCGMKI  640 (993)
T ss_pred             HHHHHHHHHHHHHHHhCCCe---EEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCH--HHHHHCCCEE
Confidence            55678899999999999944   99999999    8999999888866 87    7888888888775  2344579999


Q ss_pred             EEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCc-ceeccCc
Q 015729          111 DVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICA-IDFRMDE  189 (401)
Q Consensus       111 ~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~-~~~~~~~  189 (401)
                      +.++++.++.+|+++|++++++.+ +++++|++++++|.+|...|+++|.++|++  +|+++++|+++..+. ...+..+
T Consensus       641 v~v~~d~~G~vDle~L~~~i~~~~-~~ta~V~vt~pSn~gg~e~~I~eI~~iah~--~Galv~vDgAq~~a~~~l~~p~~  717 (993)
T PLN02414        641 VVVGTDAKGNINIEELRKAAEAHK-DNLAALMVTYPSTHGVYEEGIDEICDIIHD--NGGQVYMDGANMNAQVGLTSPGF  717 (993)
T ss_pred             EEeccCCCCCcCHHHHHHHHhccC-CCeEEEEEECCCccccccchHHHHHHHHHH--cCCEEEEEecCHHhccCcCCccc
Confidence            999999888999999999998644 367999999999999999999999999999  999999999998765 3445567


Q ss_pred             ccceEEEecCCCcccCC-----CcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcH---HHHHHHHH
Q 015729          190 WGIDVALTGSQKALSLP-----TGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSI---QLLYGLRA  261 (401)
Q Consensus       190 ~~~di~~~s~~K~l~g~-----~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~a~~~  261 (401)
                      +|+|++.+|.||+|++|     +|+|++++++++...+.........    ...++..  +.+.++.+.   .+...+..
T Consensus       718 ~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~----~~~~r~~--~s~iGt~~~a~~g~al~l~~  791 (993)
T PLN02414        718 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTG----GIPRPEK--TQPLGTISAAPWGSALILPI  791 (993)
T ss_pred             cCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCC----CcccccC--CCCcCCccchhhhhHHHHHH
Confidence            89999999999999855     5589999999876666543211000    0001111  111223222   22234455


Q ss_pred             HHHHHHH---hcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEE-cCC--CCCHHHHHHHHHhhCCeEE
Q 015729          262 ALDLIFE---EGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVI-VPS--HINSSEIVRRAWQRYNLSL  334 (401)
Q Consensus       262 al~~~~~---~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~l~~~L~~~~~i~v  334 (401)
                      ++.++..   +|+++..++...++.|+++.|.+. ++.+..+.+....-.++.+. +|+  +++..++.++|.+ +||..
T Consensus       792 A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~d-~Giha  870 (993)
T PLN02414        792 SYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMD-YGFHA  870 (993)
T ss_pred             HHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHHH-cCcEE
Confidence            5555544   456677889999999999999873 33332221111111122222 221  4677899999984 58865


Q ss_pred             ccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          335 GLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       335 ~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      .....+ ..+.+||++..+.+++|+|++++++..+.+++.
T Consensus       871 pt~~~p-v~~~lmiepTE~~skeelDrf~~al~~i~~e~~  909 (993)
T PLN02414        871 PTMSWP-VPGTLMIEPTESESKAELDRFCDALISIREEIA  909 (993)
T ss_pred             eeeccc-cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence            432223 367899999999999999999999998887763

>PLN02231 alanine transaminase

Probab=99.95  E-value=1.9e-25  Score=218.10  Aligned_cols=335  Identities=12%  Similarity=0.025  Sum_probs=225.9

Q ss_pred             cccccCCCcCChHHHHHHHccCcC-----CCCCccHHHHHHHHHHHHHHHhc----CC-CCceEEecCChhHHHHHHHhc
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNE-----DYRSPAVPALTKTLLEDIKKIFK----TT-SGTPFLIPTTGTGAWESALTN   79 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~-----~~~~~~~~~~~~~l~~~la~~~g----~~-~~~~i~~~~g~t~a~~~~~~~   79 (401)
                      ...+.+++...|..+++...+...     ....|.......++|+.+++++.    .+ .+++|++|+|+++|+..++..
T Consensus       131 ~i~~~~~~~~fp~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~  210 (534)
T PLN02231        131 LLDKSETHGLFSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL  210 (534)
T ss_pred             cCCCCCccccCCHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHH
Confidence            345566766666666655554221     12234455667788888888773    32 345699999999999999988


Q ss_pred             cC-CCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCC--CCceEEEEEecCCCccccc
Q 015729           80 TL-SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTA--HTIKAICIVHNETATGVTN  154 (401)
Q Consensus        80 ~~-~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~--~~~~~i~~~~~~n~tG~~~  154 (401)
                      ++ .+||.|+++.|.|+.+.  ..++..|++++.++++++  +.+|+++|++++++...  .+++++++++|+||||.++
T Consensus       211 l~~~~gd~Vli~~P~Y~~y~--~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vl  288 (534)
T PLN02231        211 LIRSEKDGILCPIPQYPLYS--ASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVL  288 (534)
T ss_pred             hccCCCCEEEEeCCCChhHH--HHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCC
Confidence            87 47999999999877654  556778999999998754  68899999999864211  1579999999999999999


Q ss_pred             c---hHHHHHHhhhcCCCcEEEEecccccCcc----ee-ccC---------ccc-ceEEEecCCCcccC--CCcceEEEe
Q 015729          155 N---LSKVRKLLDEYRHPALFLVDGVSSICAI----DF-RMD---------EWG-IDVALTGSQKALSL--PTGMGIVCA  214 (401)
Q Consensus       155 ~---l~~i~~l~~~~~~~~~li~D~a~~~~~~----~~-~~~---------~~~-~di~~~s~~K~l~g--~~g~G~l~~  214 (401)
                      +   +++|+++|++  +|++||+|++|.....    .+ .+.         ... ..+++.|.+|.+.+  +.++||+.+
T Consensus       289 s~e~l~~Iv~~a~~--~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~  366 (534)
T PLN02231        289 AEENQRDIVEFCKQ--EGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV  366 (534)
T ss_pred             CHHHHHHHHHHHHH--cCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEE
Confidence            6   5678889999  9999999999864321    10 110         011 24667899997754  344699876


Q ss_pred             ---cHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHH-------HHHH--hcHHHHHHHHHHHH
Q 015729          215 ---SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALD-------LIFE--EGLENVIERHRRLG  282 (401)
Q Consensus       215 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~-------~~~~--~g~~~~~~~~~~~~  282 (401)
                         ++++.+.+.....             .      ...++....+++..++.       .+..  ...+.+++.+.+++
T Consensus       367 ~~~~~~l~~~l~k~~~-------------~------~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~  427 (534)
T PLN02231        367 TGFTSDVREQIYKVAS-------------V------NLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRA  427 (534)
T ss_pred             ecCCHHHHHHHHHHHh-------------h------hcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence               5777666543210             0      00133333333333331       1111  01234577888999


Q ss_pred             HHHHHHHHHc-CCccccCCCccCCceeEEEEc--CCC-C---------CHHHHHHHHHhhCCeEEccCCCCC--C-CcEE
Q 015729          283 KATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV--PSH-I---------NSSEIVRRAWQRYNLSLGLGLNKV--A-GKVF  346 (401)
Q Consensus       283 ~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~~~-~---------~~~~l~~~L~~~~~i~v~~g~~~~--~-~~~~  346 (401)
                      +.+.+.|+++ |+.+..++    .+.++|..+  |.+ +         +...++..|+++.||.+.||....  . ..++
T Consensus       428 ~~l~~~L~~~~gi~~~~p~----Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~  503 (534)
T PLN02231        428 KTLEDALNSLEGVTCNKAE----GAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHF  503 (534)
T ss_pred             HHHHHHHhcCCCceecCCC----eeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeE
Confidence            9999999987 87776543    445666333  321 1         233466777777799999995432  2 2359


Q ss_pred             EEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          347 RIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       347 Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      |+++.  .++++++.++++|+++++++
T Consensus       504 Rit~~--~~~e~l~eal~RL~~~~~~~  528 (534)
T PLN02231        504 RCTIL--PQEDKIPAIVSRLTEFHKSF  528 (534)
T ss_pred             EEEeC--CCHHHHHHHHHHHHHHHHHH
Confidence            99874  48999999999999888764

>PRK05839 hypothetical protein; Provisional

Probab=99.95  E-value=7.7e-26  Score=214.08  Aligned_cols=312  Identities=14%  Similarity=0.048  Sum_probs=204.4

Q ss_pred             CcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHH----hcCC-CCceEEecCChhHHHHHHHhccC--CCCCeEEE
Q 015729           17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKI----FKTT-SGTPFLIPTTGTGAWESALTNTL--SPGDRIIS   89 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~----~g~~-~~~~i~~~~g~t~a~~~~~~~~~--~~gd~vl~   89 (401)
                      |.+.++.+.+++.+.......+.......++|+.++++    +|.+ .++++++|+|+++|+..++..++  ++||.|++
T Consensus        35 ~~~~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv  114 (374)
T PRK05839         35 QFETPKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAY  114 (374)
T ss_pred             CCCCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEE
Confidence            34556778888776432222233233344566666544    4643 44569999999999988877654  57899999


Q ss_pred             EcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccch---HHHHHHhhhc
Q 015729           90 FLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLLDEY  166 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l---~~i~~l~~~~  166 (401)
                      +.|+|+.+.  ..++..|++++.++.+.++.++++..+..+     ++++++++++|+||||.+++.   ++|.++|++ 
T Consensus       115 ~~P~y~~~~--~~~~~~g~~v~~v~~~~~~~~~~d~~~~~~-----~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~-  186 (374)
T PRK05839        115 PNPFYQIYE--GAAIASRAKVLLMPLTKENDFTPSLNEKEL-----QEVDLVILNSPNNPTGRTLSLEELIEWVKLALK-  186 (374)
T ss_pred             CCCCchhhH--HHHHhcCCEEEEeecccccCCcCCcchhhh-----ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHH-
Confidence            999776553  456788999999999765444444333333     247999999999999999975   557777888 


Q ss_pred             CCCcEEEEecccccCcc--e----ec------cCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccc
Q 015729          167 RHPALFLVDGVSSICAI--D----FR------MDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFD  233 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~--~----~~------~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~  233 (401)
                       +|++||+|+++.....  +    ..      .......+++.|.+|.++ .+.++|+++.++++.+++.....      
T Consensus       187 -~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~~~~~~~~~~~~------  259 (374)
T PRK05839        187 -HDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDASILKKYKAYRT------  259 (374)
T ss_pred             -cCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecCHHHHHHHHHHHh------
Confidence             9999999999874221  0    01      012235688899999863 33457999999888776643210      


Q ss_pred             hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEc
Q 015729          234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV  313 (401)
Q Consensus       234 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~  313 (401)
                                  ++....+.....++.+++.  .+..+++.++++.++++.+.+.|   ++.  .+    ..+.++|+++
T Consensus       260 ------------~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~l---~~~--~p----~gg~fi~~~~  316 (374)
T PRK05839        260 ------------YLGCASPLPLQKAAAVAWL--DDEHAEFFRNIYAKNLKLAREIL---GIT--IP----PATFYVWLPV  316 (374)
T ss_pred             ------------hcCCCCChHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHhc---CCC--CC----CeeEEEEEeC
Confidence                        0011233322233333332  12225566666777766655544   443  11    2456888888


Q ss_pred             CCCCCHHHHHHHHHhhCCeEEccCCCCC----CCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          314 PSHINSSEIVRRAWQRYNLSLGLGLNKV----AGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       314 ~~~~~~~~l~~~L~~~~~i~v~~g~~~~----~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      +   +..+++..|.+++||.+.+|....    ..+++||++..  +++++++++++|+++++
T Consensus       317 ~---~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~--~~~~~~~~l~~l~~~l~  373 (374)
T PRK05839        317 D---NDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVY--DTPKLEKALEIIKTYLE  373 (374)
T ss_pred             C---ChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHhh
Confidence            5   457888888765699999984321    24789998854  79999999999998874

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.95  E-value=3.4e-25  Score=212.77  Aligned_cols=321  Identities=12%  Similarity=0.054  Sum_probs=221.1

Q ss_pred             CChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH
Q 015729           19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL   98 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~   98 (401)
                      .+.++.++++....   ..|.....+.++++.++++++.+.   +++|+||++|+..++.++++||| |+++++ |+..+
T Consensus        58 a~~~a~~~a~~~g~---~~Y~~~~g~~~Lreaia~~~~~~~---vv~t~ggt~A~~~~~~all~pGD-Vii~~p-~~~~~  129 (460)
T PRK13238         58 AMSDRQWAAMMRGD---EAYAGSRSYYRLEDAVKDIFGYPY---TIPTHQGRAAEQILFPVLIKKGD-VVPSNY-HFDTT  129 (460)
T ss_pred             hhhHHHHHHHHhCC---cccCCCCCHHHHHHHHHHHhCCCc---EEECCCHHHHHHHHHHHhCCCCC-EEccCC-cccch
Confidence            45666666665422   223344567799999999998865   89999999999999999999999 887777 44433


Q ss_pred             HHHHHHHcCCcEEEEeCCC----------CCCCChHHHHHHHhccCCCCceEEEEEecCCCcc-cccc---hHHHHHHhh
Q 015729           99 WIDQQQRLNFNVDVVESDW----------GEGAKLDVLASKLAADTAHTIKAICIVHNETATG-VTNN---LSKVRKLLD  164 (401)
Q Consensus        99 ~~~~~~~~g~~~~~v~~~~----------~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG-~~~~---l~~i~~l~~  164 (401)
                       ....+..|++++.+++++          .+.+|+++|++.+.+.+.+++++|++++++||+| .+++   +++|.++|+
T Consensus       130 -~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~  208 (460)
T PRK13238        130 -RAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAK  208 (460)
T ss_pred             -HHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHH
Confidence             244567899999999853          2359999999999864324689999999999998 7765   568999999


Q ss_pred             hcCCCcEEEEecccccCccee-----------ccCc------ccceEEEecCCCcccCCCcceEEEec-HHHHHHhccCC
Q 015729          165 EYRHPALFLVDGVSSICAIDF-----------RMDE------WGIDVALTGSQKALSLPTGMGIVCAS-PKALEASKTAK  226 (401)
Q Consensus       165 ~~~~~~~li~D~a~~~~~~~~-----------~~~~------~~~di~~~s~~K~l~g~~g~G~l~~~-~~~~~~~~~~~  226 (401)
                      +  +|++||+|+++......+           ....      -..|++++|++|.+.++.| |+++.+ +++.+++....
T Consensus       209 ~--~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l~~~~~~~~  285 (460)
T PRK13238        209 K--YGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLLCFRDEDLFTECRTLC  285 (460)
T ss_pred             H--cCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcce-eEEEcChHHHHHHhhhcc
Confidence            9  999999999886431111           1110      1379999999998777766 888888 46777665432


Q ss_pred             CCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCc
Q 015729          227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD  306 (401)
Q Consensus       227 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~  306 (401)
                      ..             ..|..+.+..+...+.++..++....+.   ...++..+++++|.+.|++.|+++..+.+    +
T Consensus       286 ~~-------------~~g~~t~~g~~~~~~~Ala~~l~e~~~~---~~~~~~~~~~~~l~~~L~~~G~~~~~p~G----g  345 (460)
T PRK13238        286 IL-------------YEGFPTYGGLAGRDMEALAVGLYEGMDE---DYLAYRIGQVEYLGEGLEEAGVPIQTPAG----G  345 (460)
T ss_pred             cc-------------cCCcccccCcHHHHHHHHHhhHHHhhCh---HHHHHHHHHHHHHHHHHHHCCCCeEccCC----c
Confidence            10             0011011123333334444444432222   23333344678999999999999887543    2


Q ss_pred             eeEEEEcCC--------CCCHHHHHHHHHhhCCeEEccCCC------CCC-------CcEEEEeecc-cCCHHHHHHHHH
Q 015729          307 TVTAVIVPS--------HINSSEIVRRAWQRYNLSLGLGLN------KVA-------GKVFRIGHLG-HLNELQLLGCLA  364 (401)
Q Consensus       307 ~~~~~~~~~--------~~~~~~l~~~L~~~~~i~v~~g~~------~~~-------~~~~Ri~~~~-~~~~~di~~~~~  364 (401)
                      +.+.+.+.+        +.+..+++.+|.++.||.+.++..      +..       ...+|+++.- ..|.+.+|.+.+
T Consensus       346 ~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~  425 (460)
T PRK13238        346 HAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAE  425 (460)
T ss_pred             eEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHH
Confidence            445555521        224678999999888999877632      111       2569997653 458999999999


Q ss_pred             HHHHHHH
Q 015729          365 GVEMILK  371 (401)
Q Consensus       365 ~i~~~l~  371 (401)
                      +|+++.+
T Consensus       426 ~l~~~~~  432 (460)
T PRK13238        426 ALKAVKE  432 (460)
T ss_pred             HHHHHHH
Confidence            9998874

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=5.7e-26  Score=213.60  Aligned_cols=281  Identities=15%  Similarity=0.149  Sum_probs=203.6

Q ss_pred             HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCC-CeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCC
Q 015729           44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG-DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAK  122 (401)
Q Consensus        44 ~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~g-d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d  122 (401)
                      ..++++.+++++|.++++ +++++|+++++..++.+++.+| |+|+++.|.|..+  ...++..|++++.++.+.++.+|
T Consensus        62 ~~~Lr~aia~~~~~~~~~-I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y--~~~~~~~g~~v~~v~~~~~~~~~  138 (354)
T PRK04635         62 PPELINAYSAYAGVAPEQ-ILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMY--AISAETFNVGVKALPLTADYQLP  138 (354)
T ss_pred             HHHHHHHHHHHhCcCHHH-EEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHH--HHHHHHcCCEEEEEecCCCCCCC
Confidence            578999999999987654 9999999999999999988888 8999999976543  35678899999999998777788


Q ss_pred             hHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCccee---cc-CcccceEEEec
Q 015729          123 LDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF---RM-DEWGIDVALTG  198 (401)
Q Consensus       123 ~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~---~~-~~~~~di~~~s  198 (401)
                      ++.++. +     .+++++++++|+||||.+++.+++.++++.+ .+++||+|++|.......   +. .....-+++.|
T Consensus       139 ~~~l~~-~-----~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~-~~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S  211 (354)
T PRK04635        139 LDYIEQ-L-----DGAKLVFICNPNNPTGTVIDRADIEQLIEMT-PDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRT  211 (354)
T ss_pred             HHHHHh-c-----cCCCEEEEeCCCCCCCccCCHHHHHHHHHhC-CCcEEEEeCchHhhccCcchHHHHhhCCCEEEEec
Confidence            988873 3     2579999999999999999999999999874 259999999986432111   11 11223477889


Q ss_pred             CCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhc---HHHH
Q 015729          199 SQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG---LENV  274 (401)
Q Consensus       199 ~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g---~~~~  274 (401)
                      .+|+++ ++.++|++++++++.+.+.....                    +++.+..   .+.+++..+...+   +++.
T Consensus       212 ~SK~~~l~GlRlG~~i~~~~~~~~l~~~~~--------------------~~~~~~~---~~~~a~~~l~~~~~~~~~~~  268 (354)
T PRK04635        212 LSKAFALAGARCGFTLANEELIEILMRVIA--------------------PYPVPLP---VSEIATQALSEAGLARMKFQ  268 (354)
T ss_pred             hHHHhhhhHHHHhhhhCCHHHHHHHHhhcC--------------------CCCCCHH---HHHHHHHHHhcccHHHHHHH
Confidence            999984 23347999999998877653211                    1112222   2233344443333   3445


Q ss_pred             HHHHHHHHHHHHHHHHHcC-CccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeeccc
Q 015729          275 IERHRRLGKATRLAVEAWG-LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH  353 (401)
Q Consensus       275 ~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~  353 (401)
                      ++++.++++.+.+.|++++ +++..+    . +.++++.++   +..++.+.|.++ ||.++.+.....++++||++.  
T Consensus       269 ~~~~~~~r~~l~~~L~~~~~~~~~~~----~-g~f~~~~~~---~~~~~~~~l~~~-gv~v~~~~~~~~~~~lRis~~--  337 (354)
T PRK04635        269 VLDLNAQGARLQAALSMYGGAKVLEG----N-GNYVLAKFD---DVDAVFKALWDA-GIVARAYKDPRLANCIRFSFS--  337 (354)
T ss_pred             HHHHHHHHHHHHHHHHhCCCceECCC----C-CcEEEEECC---CHHHHHHHHHHC-CEEEEECCCCCCCCeEEEEeC--
Confidence            6667788888999998874 665543    1 246777775   467888878655 999986643333568999853  


Q ss_pred             CCHHHHHHHHHHHHHH
Q 015729          354 LNELQLLGCLAGVEMI  369 (401)
Q Consensus       354 ~~~~di~~~~~~i~~~  369 (401)
                       +.+|++++++++++-
T Consensus       338 -~~e~~~~l~~al~~~  352 (354)
T PRK04635        338 -NRAETDKLIGLIRNQ  352 (354)
T ss_pred             -CHHHHHHHHHHHHHh
Confidence             789999999999753

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=2.8e-25  Score=209.35  Aligned_cols=287  Identities=13%  Similarity=0.093  Sum_probs=205.8

Q ss_pred             HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCC-CeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCC---CC
Q 015729           44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG-DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW---GE  119 (401)
Q Consensus        44 ~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~g-d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~---~~  119 (401)
                      ..++++.+++++|.++. ++++++|+++++..++.+++.+| |+|++++|. ++.+ ...++..|++++.++.+.   +.
T Consensus        61 ~~~lr~~ia~~~~~~~~-~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~-y~~~-~~~~~~~g~~~~~v~~~~~~~~~  137 (364)
T PRK04781         61 PPGLRSALAALYGCAPE-QLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPV-FGMY-AVCARLQNAPLVEVPLVDGADGF  137 (364)
T ss_pred             HHHHHHHHHHHhCcChH-HEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCC-hHHH-HHHHHHcCCEEEEEecCCCccCC
Confidence            47999999999998764 59999999999999999888888 788988885 3332 355677899999999742   23


Q ss_pred             CCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCccee---c-cCcccceEE
Q 015729          120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF---R-MDEWGIDVA  195 (401)
Q Consensus       120 ~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~---~-~~~~~~di~  195 (401)
                      .+|++++++.+..   ++++++++++|+||||.+++.+++.++++...++++||+|+++.......   . .+.....++
T Consensus       138 ~~d~~~l~~~~~~---~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~~vi~  214 (364)
T PRK04781        138 HADVPAIVAAALA---SNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDNLAV  214 (364)
T ss_pred             CcCHHHHHHHHhc---cCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCCCEEE
Confidence            5688888665532   46799999999999999999999999888744689999999987433211   1 122234688


Q ss_pred             EecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh---cH
Q 015729          196 LTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE---GL  271 (401)
Q Consensus       196 ~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~---g~  271 (401)
                      +.|.+|.++ .+.++|+++.++++++.+...+.                    +++.+.....   .+...+...   .+
T Consensus       215 ~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~~--------------------~~~~~~~~~~---~a~~~l~~~~~~~~  271 (364)
T PRK04781        215 LRTLSKAHALAAARIGSLIANAELIAVLRRCQA--------------------PYPVPTPCAA---LAEQALSAPALAVT  271 (364)
T ss_pred             EecChhhcccccceeeeeeCCHHHHHHHHhccC--------------------CCCCCHHHHH---HHHHHHhcccHHHH
Confidence            899999985 34457999999999887764321                    1123332222   233333322   13


Q ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCC-CCCCcEEEEe
Q 015729          272 ENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLN-KVAGKVFRIG  349 (401)
Q Consensus       272 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~-~~~~~~~Ri~  349 (401)
                      .+..+++.++++.+.+.|+++ |+....+    ..+.+++++++   +..++.+.|.++ ||.|+++.. ...++++||+
T Consensus       272 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~p----~~g~f~~~~~~---~~~~~~~~l~~~-gI~v~~~~~~~~~~~~~Ris  343 (364)
T PRK04781        272 ARRVAEVRAERERLHAALAQLPGVRRVYP----SQGNFLLVRFD---DAEAAFQALLAA-GVVVRDQRAAPRLSDALRIT  343 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCeECC----CCCcEEEEEcC---CHHHHHHHHHHC-CeEEeeCCCCCCCCCeEEEe
Confidence            455666788888999999887 6542222    13457888885   467888888765 999998843 2235789997


Q ss_pred             ecccCCHHHHHHHHHHHHHHH
Q 015729          350 HLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       350 ~~~~~~~~di~~~~~~i~~~l  370 (401)
                      +.   +.++.++++++|+++.
T Consensus       344 ~~---~~~~~~~l~~al~~~~  361 (364)
T PRK04781        344 LG---TPEQNDRVLAALQRTQ  361 (364)
T ss_pred             CC---CHHHHHHHHHHHHHHH
Confidence            54   6889999999998764

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.95  E-value=2.3e-25  Score=196.36  Aligned_cols=333  Identities=13%  Similarity=0.057  Sum_probs=237.5

Q ss_pred             cCChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhcCC-----CCceEEecCChhHHHHHHHhccCCCCCeEEEE
Q 015729           18 VHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTT-----SGTPFLIPTTGTGAWESALTNTLSPGDRIISF   90 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~-----~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   90 (401)
                      .+.++.+.+|+.+...+  +.+|.+.......|++++++++.+     .++++++|+|+++|++.++.++.+||.+|+++
T Consensus        77 ~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNILlP  156 (447)
T KOG0259|consen   77 FRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGANILLP  156 (447)
T ss_pred             ccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCceecC
Confidence            34456666666664433  345666677889999999997754     34669999999999999999999999999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeC--CCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhh
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVES--DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE  165 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~  165 (401)
                      .||++-+.  ..+...|++++..++  +.+|.+|++.+|..++++|    .++++.+|+||.|.+++   +++|+++|++
T Consensus       157 rPGfp~Y~--~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT----~AivviNP~NPcGnVys~~HL~kiae~A~k  230 (447)
T KOG0259|consen  157 RPGFPLYD--TRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENT----VAIVVINPNNPCGNVYSEDHLKKIAETAKK  230 (447)
T ss_pred             CCCCchHH--HhhhhcCceeEeecccCcccceechHHHHHhhccCe----eEEEEeCCCCCCcccccHHHHHHHHHHHHH
Confidence            99977543  567888999999887  3468899999999999755    99999999999999996   7889999999


Q ss_pred             cCCCcEEEEecccccCc---cee----ccCcccceEEEecCCCcccCCC-cceEEEecHHHHHHhccCCCCccccchHHH
Q 015729          166 YRHPALFLVDGVSSICA---IDF----RMDEWGIDVALTGSQKALSLPT-GMGIVCASPKALEASKTAKSVRVFFDWKDY  237 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~---~~~----~~~~~~~di~~~s~~K~l~g~~-g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  237 (401)
                        ++++||.|+.|....   -+|    .+...-+.+.+++.+|.+..|. .+||++..+.. ..+...+   .   + ..
T Consensus       231 --lgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~~hD~~-gvf~~~~---~---~-q~  300 (447)
T KOG0259|consen  231 --LGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIALHDPR-GVFRDTK---V---V-QG  300 (447)
T ss_pred             --hCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCceeeeEEEeccc-ccccchH---H---H-HH
Confidence              999999999976322   222    2233346788889999885442 58999987653 0111100   0   0 00


Q ss_pred             HHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcC--
Q 015729          238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVP--  314 (401)
Q Consensus       238 ~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~--  314 (401)
                      ...+..-   ...|+..-..|+..-|+..-++-+++...-.+.+.+...+.|.++ ++..... ++  +.++++++++  
T Consensus       301 ~~~~~~~---~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~k-Pe--g~mylmv~l~~s  374 (447)
T KOG0259|consen  301 IKNFLDI---IPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVK-PE--GCMYLMVKLNLS  374 (447)
T ss_pred             HHHHHhc---cCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcC-CC--cceEEEeccchh
Confidence            1111111   112444333333333333223347888888999999999999997 6663332 22  3356667653  


Q ss_pred             ---CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          315 ---SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       315 ---~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                         +-.+..++++.|..+..+.+-||......+|+|+++..  ..+.+++++.+|++.+.+..
T Consensus       375 ~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~~--~~~~leea~~Rik~Fc~RH~  435 (447)
T KOG0259|consen  375 LFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIVITV--EEEMLEEAFSRIKEFCDRHS  435 (447)
T ss_pred             hhccccccHHHHHHHhhhcceEEeccccccCCCeEEEEEcc--ChHHHHHHHHHHHHHHHhhh
Confidence               22356689999887669999999766678999997754  88999999999999987764

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.95  E-value=3.1e-25  Score=209.27  Aligned_cols=330  Identities=13%  Similarity=0.056  Sum_probs=240.6

Q ss_pred             CCCCCCCcccccCCCcCChHHHHHHHccCcCCCCC----ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            3 YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRS----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         3 ~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      +.++.++.||--..-..+.+++.+++.+++....+    .+......++++.|++++|.+.   .++.++|..|+..++.
T Consensus       104 ~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~---all~sSGy~AN~~~i~  180 (476)
T PLN02955        104 LLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKED---CLVCPTGFAANMAAMV  180 (476)
T ss_pred             EEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCCCc---EEEECChHHHHHHHHH
Confidence            45677788888887777788888888887654321    3345677899999999999887   7788889999988886


Q ss_pred             ccC--------------CCCCeEEEEcCCcchHHHH-HHHHHc-CCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEE
Q 015729           79 NTL--------------SPGDRIISFLIGQFSLLWI-DQQQRL-NFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAIC  142 (401)
Q Consensus        79 ~~~--------------~~gd~vl~~~~~~~~~~~~-~~~~~~-g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~  142 (401)
                      ++.              .++|.|+.....|.|...+ .+++.. ++++..++.+     |++.|++++++.+ .+.++|+
T Consensus       181 aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HN-----D~~~Le~~L~~~~-~~~~~Vv  254 (476)
T PLN02955        181 AIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHC-----DMYHLNSLLSSCK-MKRKVVV  254 (476)
T ss_pred             HHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCC-----CHHHHHHHHHhCC-CCceEEE
Confidence            652              3445566665666666522 122222 4666666644     8999999997654 3456788


Q ss_pred             EEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCccee---------ccCcccceEEEecCCCcccCCCcceEEE
Q 015729          143 IVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF---------RMDEWGIDVALTGSQKALSLPTGMGIVC  213 (401)
Q Consensus       143 ~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~---------~~~~~~~di~~~s~~K~l~g~~g~G~l~  213 (401)
                      +....++.|.+.|+++|.++|++  +|+++|+|++|+.|.+-.         +.. ..+|+++.|.+|.+ |..| |+++
T Consensus       255 ~EgV~SmdGdiapL~eL~~L~~~--~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~-~di~ii~~TLsKA~-G~~G-Gfi~  329 (476)
T PLN02955        255 TDSLFSMDGDFAPMEELSQLRKK--YGFLLVIDDAHGTFVCGENGGGVAEEFNCE-ADVDLCVGTLSKAA-GCHG-GFIA  329 (476)
T ss_pred             EeCCCCCCCCcCCHHHHHHHHHH--cCcEEEEcccccCceecCCCCcHHHHhCCC-CCCcEEEEeCccch-hccC-ceee
Confidence            88889999999999999999999  999999999999775422         111 35789999999998 4555 8999


Q ss_pred             ecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcC
Q 015729          214 ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG  293 (401)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g  293 (401)
                      ++++..+.+.....                ...+....++..+++..++++.+.++  ...+++++++.+++++.   +|
T Consensus       330 gs~~~~~~l~~~~~----------------~~ifStalpp~~aaa~laal~l~~~~--~~~r~~L~~n~~~fr~~---~G  388 (476)
T PLN02955        330 CSKKWKQLIQSRGR----------------SFIFSTAIPVPMAAAAYAAVVVARKE--KWRRKAIWERVKEFKAL---SG  388 (476)
T ss_pred             cHHHHHHHHHHhCC----------------CCeecccccHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHh---cC
Confidence            99988776664322                11123346666777788888877654  45778888888888873   35


Q ss_pred             CccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          294 LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~---~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      +.+       .+ +++.+.+++...+.++.+.|+++ ||.+.+..+|.   ....+||++.+.+|++||++++++|.+++
T Consensus       389 ~~~-------~s-PI~pI~ig~~~~a~~~~~~L~~~-Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~  459 (476)
T PLN02955        389 VDI-------SS-PIISLVVGNQEKALKASRYLLKS-GFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCL  459 (476)
T ss_pred             CCC-------CC-CEEEEEeCCHHHHHHHHHHHHHC-CCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHH
Confidence            543       13 35666665554566789999877 99988776542   22359999999999999999999999998


Q ss_pred             HhcCCC
Q 015729          371 KDVGYP  376 (401)
Q Consensus       371 ~~~~~~  376 (401)
                      +..+..
T Consensus       460 ~~~~~~  465 (476)
T PLN02955        460 DFDNTA  465 (476)
T ss_pred             hhhcce
Confidence            766553

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.95  E-value=1.6e-25  Score=211.06  Aligned_cols=309  Identities=14%  Similarity=0.093  Sum_probs=211.8

Q ss_pred             CCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcc
Q 015729           16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF   95 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~   95 (401)
                      .|.++++.+++++.+.......+.... ..++++.++++++.+++ ++++++|+++++..++.++ .+||+|++++|+|+
T Consensus        32 n~~~~~~~~~~a~~~~~~~~~~Y~~~~-~~~Lr~aia~~~~v~~~-~I~it~G~~~~i~~~~~~l-~~g~~vlv~~P~y~  108 (360)
T PRK07392         32 NPLGPPESVIAAIQSALSALRHYPDPD-YRELRLALAQHHQLPPE-WILPGNGAAELLTWAGREL-AQLRAVYLITPAFG  108 (360)
T ss_pred             CCCCCCHHHHHHHHHHHHHhhcCCCcC-HHHHHHHHHHHhCcChh-hEEECCCHHHHHHHHHHHh-CCCCeEEEECCCcH
Confidence            356777888888776433222222222 46899999999988764 4999999999999888775 46889999999766


Q ss_pred             hHHHHHHHHHcCCcEEEEeCCCCCC-----CChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCc
Q 015729           96 SLLWIDQQQRLNFNVDVVESDWGEG-----AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPA  170 (401)
Q Consensus        96 ~~~~~~~~~~~g~~~~~v~~~~~~~-----~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~  170 (401)
                      .+.  ..++..|++++.++.+.++.     .+++++++..     .+++++++++|+||||.+++.++|.+++++  +++
T Consensus       109 ~~~--~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~--~~~  179 (360)
T PRK07392        109 DYR--RALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-----TPNDGLLLNNPHNPTGKLWSREAILPLLEQ--FAL  179 (360)
T ss_pred             HHH--HHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-----cCCCEEEEeCCCCCCCCCcCHHHHHHHHHH--CCE
Confidence            553  66788999999999876543     2455554432     256899999999999999999999999999  775


Q ss_pred             EEEEecccccCcce------ec-cCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhh
Q 015729          171 LFLVDGVSSICAID------FR-MDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYN  242 (401)
Q Consensus       171 ~li~D~a~~~~~~~------~~-~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (401)
                       +|+|++|......      .. .......+++.|.+|.++ .+.++|+++++++.++.+.....               
T Consensus       180 -~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~~~~~~~~---------------  243 (360)
T PRK07392        180 -VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRWQQWRD---------------  243 (360)
T ss_pred             -EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHHHHHHHhhCC---------------
Confidence             6669998643211      00 112234688899999995 45567999999988776643210               


Q ss_pred             cCCCCCCCCcHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHH
Q 015729          243 LGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSS  320 (401)
Q Consensus       243 ~g~~~~~~~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (401)
                           .++.+.....++.++++   +.. .+..++.++++++.+.+.|+++ |+.+..     ....+++++++.  +..
T Consensus       244 -----~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-----~~~~fl~~~~~~--~~~  308 (360)
T PRK07392        244 -----PWPVNGLAAAAAIAALA---DRDFQQQTWAWLPPAREALFQGLASLPGLTPLP-----SAANFLLVQSQG--SAL  308 (360)
T ss_pred             -----CCCCCHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECC-----CCCCEEEEEcCC--CHH
Confidence                 12344544444444443   222 3344566777888888999876 665543     123467777753  677


Q ss_pred             HHHHHHHhhCCeEEccCCCCC--CCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          321 EIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       321 ~l~~~L~~~~~i~v~~g~~~~--~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      ++...+.+++||.+.+|....  ..+++||++..   .++.+++.++++.++
T Consensus       309 ~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~---~~~~~~l~~al~~~~  357 (360)
T PRK07392        309 QLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRT---EAENQRLLEALAAIL  357 (360)
T ss_pred             HHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCC---HHHHHHHHHHHHHHh
Confidence            888887666699999995432  34689997654   444566666665554

>PLN02672 methionine S-methyltransferase

Probab=99.95  E-value=6e-25  Score=224.22  Aligned_cols=322  Identities=14%  Similarity=0.114  Sum_probs=226.8

Q ss_pred             CCcCChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHhcCCCC--ceEEecCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           16 GPVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSG--TPFLIPTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~g~~~~--~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      .|.++++.+++++.+.... .......+....+++.+++.+|.+..  +++++++|+++++..++.+++++||+|+++.|
T Consensus       707 ~d~ppPp~V~eAi~eal~~~~~s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~P  786 (1082)
T PLN02672        707 SFLPVPSAVKASIFESFVRQNISESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAG  786 (1082)
T ss_pred             CCCCCCHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence            3667778888887763321 12223445678899999998888643  46999999999999998999999999999999


Q ss_pred             CcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecC-CCcccccc---hHHHHHHhhhc
Q 015729           93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNE-TATGVTNN---LSKVRKLLDEY  166 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~-n~tG~~~~---l~~i~~l~~~~  166 (401)
                      .|+.+.  ..++..|++++.++++.  +..+|++++++++++.   +.+.+++++|+ ||||.+++   +++|.++|++ 
T Consensus       787 tY~~Y~--~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~---~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k-  860 (1082)
T PLN02672        787 SNGTYV--SAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETV---KKPWVYISGPTINPTGLLYSNSEIEEILSVCAK-  860 (1082)
T ss_pred             ChHHHH--HHHHHcCCEEEEEecccccCCCCCHHHHHHHhccC---CCCEEEEECcCCCCcCccCCHHHHHHHHHHHHH-
Confidence            766554  56788899999999864  4577889999998641   23578888887 99999997   5567888888 


Q ss_pred             CCCcEEEEecccccCccee------cc-------Cc---ccceEEEecCCCcccCCCc--ceEEEecHH-HHHHhccCCC
Q 015729          167 RHPALFLVDGVSSICAIDF------RM-------DE---WGIDVALTGSQKALSLPTG--MGIVCASPK-ALEASKTAKS  227 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~~~------~~-------~~---~~~di~~~s~~K~l~g~~g--~G~l~~~~~-~~~~~~~~~~  227 (401)
                       +|++||+|++|+......      +.       ..   -...+++.|.+|.++ .+|  +||++++++ +.+.+.....
T Consensus       861 -~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~-lpGLRIGylIap~~eLi~~l~~~~~  938 (1082)
T PLN02672        861 -YGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELL-SGGHEFGFLALNDSVLIDAFHSAPG  938 (1082)
T ss_pred             -cCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhc-cHHHHheeEEeCCHHHHHHHHHhhh
Confidence             999999999986322110      00       00   013567889998773 544  699998654 6666643210


Q ss_pred             CccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHH------HhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Q 015729          228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF------EEGLENVIERHRRLGKATRLAVEAWGLKNCTQKE  301 (401)
Q Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~------~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  301 (401)
                                   .  .     .+......++.+++....      ...+++.++.++++++++.+.|++.|+++..+  
T Consensus       939 -------------~--s-----~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~Gi~v~~P--  996 (1082)
T PLN02672        939 -------------L--S-----RPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEACGWDVLEP--  996 (1082)
T ss_pred             -------------h--c-----CCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeEecC--
Confidence                         0  0     011122233444443332      11245667778999999999999888876654  


Q ss_pred             ccCCceeEEEEcCC-----------------CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHH
Q 015729          302 EWFSDTVTAVIVPS-----------------HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLA  364 (401)
Q Consensus       302 ~~~~~~~~~~~~~~-----------------~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~  364 (401)
                        ..+.++|+.++.                 +.+..++++.|.++.||.+.+|.....++++||++..  ++++++++++
T Consensus       997 --eGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIsfa~--~~e~LeeALe 1072 (1082)
T PLN02672        997 --QGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFSFAL--EDSEFDRALK 1072 (1082)
T ss_pred             --CcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEEecC--CHHHHHHHHH
Confidence              345566665420                 2467889999998779999999554446799998765  8889999999


Q ss_pred             HHHHHHH
Q 015729          365 GVEMILK  371 (401)
Q Consensus       365 ~i~~~l~  371 (401)
                      +|++.++
T Consensus      1073 rL~kf~~ 1079 (1082)
T PLN02672       1073 AIARFKE 1079 (1082)
T ss_pred             HHHHHHH
Confidence            9988664

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.95  E-value=4.8e-25  Score=210.51  Aligned_cols=334  Identities=14%  Similarity=0.100  Sum_probs=221.4

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCCCcc--------HHHHHHHHHH----HHHHHhcCCCCceEEecCChhHHHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPA--------VPALTKTLLE----DIKKIFKTTSGTPFLIPTTGTGAWESA   76 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~--------~~~~~~~l~~----~la~~~g~~~~~~i~~~~g~t~a~~~~   76 (401)
                      +..++.|+--.++|.|++++......+++.+        -.+...++++    ++++++|.+..  +++++||+.|+..+
T Consensus        29 ~~~~l~~sen~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~a--lv~~~SG~~A~~~~  106 (416)
T PRK13034         29 DHLELIASENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYA--NVQPHSGSQANGAV  106 (416)
T ss_pred             cCeeecccccCCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCce--EEecCCcHHHHHHH
Confidence            3455566666679999999988642222210        1245666776    99999998762  35678999999999


Q ss_pred             HhccCCCCCeEEEEcCCcchHHH-HHHHHHcCCcE--EEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCccc
Q 015729           77 LTNTLSPGDRIISFLIGQFSLLW-IDQQQRLNFNV--DVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGV  152 (401)
Q Consensus        77 ~~~~~~~gd~vl~~~~~~~~~~~-~~~~~~~g~~~--~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~  152 (401)
                      +.+++++||+|++....|.+... +......+...  ..++.+. .+.+|++++++.++.   .++++|++..  ..+|.
T Consensus       107 l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~klVi~~~--~~~g~  181 (416)
T PRK13034        107 YLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKE---HKPKLIIAGF--SAYPR  181 (416)
T ss_pred             HHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEcccccccCCcCHHHHHHHHhh---cCCeEEEECC--Ccccc
Confidence            99999999999999988776321 10000112222  2333332 345899999998864   3567777654  34678


Q ss_pred             ccchHHHHHHhhhcCCCcEEEEecccccCcceeccC---cccceEEEecCCCcccCCCcceEEEecHHH-HHHhccCCCC
Q 015729          153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD---EWGIDVALTGSQKALSLPTGMGIVCASPKA-LEASKTAKSV  228 (401)
Q Consensus       153 ~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~---~~~~di~~~s~~K~l~g~~g~G~l~~~~~~-~~~~~~~~~~  228 (401)
                      ..|+++|.++|++  +|+++++|++|++|....+..   -.++|++++|.||+++|+.| |+++++++. ..++......
T Consensus       182 ~~dl~~l~~la~~--~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~G-G~v~~~~~~~~~~~~~~~~~  258 (416)
T PRK13034        182 ELDFARFREIADE--VGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRG-GMILTNDEEIAKKINSAVFP  258 (416)
T ss_pred             ccCHHHHHHHHHH--cCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCCC-eEEEECcHHHHHHHHhhcCC
Confidence            8899999999999  999999999999887543221   12589999999999987777 766665543 3333321100


Q ss_pred             ccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCcee
Q 015729          229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV  308 (401)
Q Consensus       229 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~  308 (401)
                                     +  +..++.+..++++..++....+.+..+.+++.+++++++++.|+++|+++..+..  .+ .+
T Consensus       259 ---------------~--~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~G~~~~~~~~--~t-~i  318 (416)
T PRK13034        259 ---------------G--LQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKERGYDLVSGGT--DN-HL  318 (416)
T ss_pred             ---------------c--ccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHcCCEeccCCC--CC-cE
Confidence                           1  0112333333444434443332334567899999999999999998988764211  12 34


Q ss_pred             EEEEcCC-CCCHHHHHHHHHhhCCeEEccC------CCCCCCcEEEEeecc----cCCHHHHHHHHHHHHHHHHhc
Q 015729          309 TAVIVPS-HINSSEIVRRAWQRYNLSLGLG------LNKVAGKVFRIGHLG----HLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       309 ~~~~~~~-~~~~~~l~~~L~~~~~i~v~~g------~~~~~~~~~Ri~~~~----~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +.+.+.+ +.+...+.+.|.++ ||.+..-      ..+.....+|++++.    .++++|+++++++|++++.+.
T Consensus       319 ~~v~~~~~~~~~~~~~~~L~~~-GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~~  393 (416)
T PRK13034        319 LLVDLRPKGLSGKDAEQALERA-GITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDDL  393 (416)
T ss_pred             EEEEcCCCCCCHHHHHHHHHhC-CcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhcC
Confidence            5555533 44556677778655 9988752      122224469999877    677999999999999999865

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.95  E-value=3e-25  Score=206.71  Aligned_cols=278  Identities=12%  Similarity=0.092  Sum_probs=198.0

Q ss_pred             HHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCC
Q 015729           43 LTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAK  122 (401)
Q Consensus        43 ~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d  122 (401)
                      ...+|++.+++++|.++.+ |++++|+++++..++. ++++| +|+++.|+|+.+  ...++..|++++.++++.. ..|
T Consensus        41 ~~~~lr~~ia~~~~~~~~~-I~it~Gs~~~l~~~~~-~~~~~-~vv~~~P~y~~y--~~~~~~~G~~v~~vp~~~~-~~~  114 (332)
T PRK06425         41 SYTDIEDQIKIYTQGLKIK-VLIGPGLTHFIYRLLS-YINVG-NIIIVEPNFNEY--KGYAFTHGIRISALPFNLI-NNN  114 (332)
T ss_pred             CHHHHHHHHHHHhCCCcce-EEECCCHHHHHHHHHH-HhCCC-cEEEeCCChHHH--HHHHHHcCCeEEEEeCCcc-cCc
Confidence            4679999999999998655 9999999999998886 46776 577778865544  4678889999999998753 345


Q ss_pred             hHHHHHHHhccCCCCceEEEEEecCCCcccccch---HHHHHHhhhcCCCcEEEEecccccCcce-----ec-cCcccce
Q 015729          123 LDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLLDEYRHPALFLVDGVSSICAID-----FR-MDEWGID  193 (401)
Q Consensus       123 ~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~li~D~a~~~~~~~-----~~-~~~~~~d  193 (401)
                      ++.+++       .+++++++++|+||||.+++.   ++|.++|++  ++++||+|+++......     .. .......
T Consensus       115 ~~~l~~-------~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~--~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~v  185 (332)
T PRK06425        115 PEILNN-------YNFDLIFIVSPDNPLGNLISRDSLLTISEICRK--KGALLFIDEAFIDFVPNRAEEDVLLNRSYGNV  185 (332)
T ss_pred             HHHHhh-------cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHH--cCCEEEEecchhccccccchhHHHHhccCCCE
Confidence            554432       257899999999999999985   456667777  99999999998643211     01 1122356


Q ss_pred             EEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHH-HhcH
Q 015729          194 VALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-EEGL  271 (401)
Q Consensus       194 i~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~-~~g~  271 (401)
                      +++.|.+|.++ .+..+|++++++++++.+.....                    +++.+..   ++ +++.... ....
T Consensus       186 i~~~SfSK~~~l~GlRiGy~v~~~~li~~l~~~~~--------------------~~~~~~~---~~-~~l~~~~~~~~~  241 (332)
T PRK06425        186 IIGRSLTKILGIPSLRIGYIATDDYNMKISRKITE--------------------PWSVCDP---AI-DFIRSIDLDYVA  241 (332)
T ss_pred             EEEeecHHhcCCchhhheeeecCHHHHHHHHHcCC--------------------CCccCHH---HH-HHHHHhhhHHHH
Confidence            88899999985 34457999999998877764311                    1112221   11 1122111 1113


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEe
Q 015729          272 ENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIG  349 (401)
Q Consensus       272 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~  349 (401)
                      ++.++.+++.++.+.+.|+++|+.+..+.    .+.++++.+|   +..++.+.|.++ ||.++++...  ..++++||+
T Consensus       242 ~~~~~~~~~~r~~l~~~L~~~g~~~~~~~----~g~f~~~~~~---~~~~~~~~l~~~-gi~v~~~~~f~~~~~~~iRis  313 (332)
T PRK06425        242 KHSLDIMENERSYLINNLEAMGFRAAGDP----SANFITFMIP---DAHDFYSYLLKN-GILVRLLDDYECLGEQYIRIA  313 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEECCCC----CceEEEEEcC---CHHHHHHHHHHC-CeEEEECCCCCCCCCCEEEEE
Confidence            56788888999999999998887654321    2346778875   578899999876 9999998543  224689997


Q ss_pred             ecccCCHHHHHHHHHHHHHHH
Q 015729          350 HLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       350 ~~~~~~~~di~~~~~~i~~~l  370 (401)
                      +.   +.++.++++++|++++
T Consensus       314 ~~---~~~~~~~l~~al~~~~  331 (332)
T PRK06425        314 IR---RRSFNIKLVNALRNFL  331 (332)
T ss_pred             eC---CHHHHHHHHHHHHHHh
Confidence            54   6889999999998765

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.95  E-value=1e-24  Score=204.83  Aligned_cols=307  Identities=11%  Similarity=0.117  Sum_probs=213.3

Q ss_pred             CcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcch
Q 015729           17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFS   96 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~   96 (401)
                      |...++.+++++.+.......+.. ....++|+.++++++.+++ ++++++|+++++..++.++ .+ ++|+++.|+|+.
T Consensus        30 ~~~~p~~~~~a~~~~~~~~~~Y~~-~~~~~lr~~ia~~~~~~~~-~i~it~Ga~~~l~~~~~~~-~~-~~v~i~~P~y~~  105 (354)
T PRK06358         30 PLGVPESLKQAITENLDKLVEYPD-PDYLELRKRIASFEQLDLE-NVILGNGATELIFNIVKVT-KP-KKVLILAPTFAE  105 (354)
T ss_pred             CCCCCHHHHHHHHHHHHhhhcCCC-ccHHHHHHHHHHHhCCChh-hEEECCCHHHHHHHHHHHh-CC-CcEEEecCChHH
Confidence            445678888888774322222221 2367999999999998764 4999999999999888774 44 689999997664


Q ss_pred             HHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcE
Q 015729           97 LLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPAL  171 (401)
Q Consensus        97 ~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~  171 (401)
                      +  ...++..|++++.++.+.+  +.+| +++.+.+.    .+++++++++|+||||.+++   +++|.++|++  ++++
T Consensus       106 ~--~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~----~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~--~~~~  176 (354)
T PRK06358        106 Y--ERALKAFDAEIEYAELTEETNFAAN-EIVLEEIK----EEIDLVFLCNPNNPTGQLISKEEMKKILDKCEK--RNIY  176 (354)
T ss_pred             H--HHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhc----cCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHh--cCCE
Confidence            4  3567888999999998654  3577 55555554    35799999999999999997   5667778888  9999


Q ss_pred             EEEecccccCcce------e-ccCcccceEEEecCCCccc-CCCcceEEEec-HHHHHHhccCCCCccccchHHHHHHhh
Q 015729          172 FLVDGVSSICAID------F-RMDEWGIDVALTGSQKALS-LPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYN  242 (401)
Q Consensus       172 li~D~a~~~~~~~------~-~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (401)
                      ||+|+++......      + ........+++.|.+|.++ .+.++|++++. +.+.+.+.....               
T Consensus       177 ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~---------------  241 (354)
T PRK06358        177 LIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMRE---------------  241 (354)
T ss_pred             EEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCC---------------
Confidence            9999998643211      0 1122234688899999985 44567999874 566665543211               


Q ss_pred             cCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHH
Q 015729          243 LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSE  321 (401)
Q Consensus       243 ~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (401)
                           .++.+.....++..+++.  ...+++.++.+.++++.+.+.|.+. |+.+..+    .. .++++++|+   ..+
T Consensus       242 -----~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~----~g-~f~~~~~~~---~~~  306 (354)
T PRK06358        242 -----PWSINTFADLAGQTLLDD--KEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKP----SV-NFIFFKLEK---PID  306 (354)
T ss_pred             -----CCcchHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCC----cc-eEEEEEcCc---hHH
Confidence                 112333333334444421  1124667778888889999999886 6555543    23 377788863   478


Q ss_pred             HHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          322 IVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       322 l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      +.+.|.++ ||.+.++...  ..++++||++.   ++++.++++++++.++
T Consensus       307 ~~~~l~~~-gI~v~~~~~f~~~~~~~iRls~~---~~~~~~~l~~~l~~~~  353 (354)
T PRK06358        307 LRKELLKK-GILIRSCSNYRGLDENYYRVAVK---SREDNKKLLKALEVIL  353 (354)
T ss_pred             HHHHHHHC-CeEEEECCCCCCCCCCEEEEEeC---CHHHHHHHHHHHHHHh
Confidence            88998875 9999998543  23468999743   6889999999998764

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.95  E-value=2.6e-25  Score=210.37  Aligned_cols=307  Identities=14%  Similarity=0.164  Sum_probs=220.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE  119 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  119 (401)
                      .....++++.+++++|.+.   +++++|||+|+.+++.++ +++||+|+++.+.|++..  ..+...|++++.++++.++
T Consensus        32 g~~~~~le~~la~~~g~~~---~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~--~~~~~~G~~~v~vd~~~~~  106 (379)
T PRK11658         32 GPKNQALEQAFCQLTGNQH---AIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTL--NMIVLLGATPVMVDVDRDT  106 (379)
T ss_pred             CHhHHHHHHHHHHHhCCCe---EEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHH--HHHHHcCCEEEEEecCCCc
Confidence            3567899999999999864   788899999999999887 899999999999877664  4567789999999988654


Q ss_pred             -CCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCccee--ccCcccceEEE
Q 015729          120 -GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF--RMDEWGIDVAL  196 (401)
Q Consensus       120 -~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~--~~~~~~~di~~  196 (401)
                       .+|++++++++++    ++++|+.+   +++|...|+++|.++|++  +|+++|+|++|+.|....  .....+.+++.
T Consensus       107 ~~~d~~~l~~~i~~----~tkav~~~---~~~G~~~d~~~i~~~a~~--~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~S  177 (379)
T PRK11658        107 LMVTPEAIEAAITP----RTKAIIPV---HYAGAPADLDAIRAIGER--YGIPVIEDAAHAVGTYYKGRHIGARGTAIFS  177 (379)
T ss_pred             CCcCHHHHHHhccc----CCeEEEEe---CCCCCcCCHHHHHHHHHH--cCCeEEEECCCccCCeECCeecCCCCCEEEe
Confidence             6899999999874    56887744   468999999999999999  999999999999876543  23455678889


Q ss_pred             ecCCCcccCCCcceEEEec-HHHHHHhccCCCCccccchHHHH--------HHhhcCCCCCCCCcHHHHHHHHHHHHHHH
Q 015729          197 TGSQKALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYI--------KFYNLGTFWPYTPSIQLLYGLRAALDLIF  267 (401)
Q Consensus       197 ~s~~K~l~g~~g~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~a~~~al~~~~  267 (401)
                      ++.+|.+.++.| |+++.+ +++.+++......+...+.....        ..+..|.    +..   +..+.+|+...+
T Consensus       178 f~~~K~l~~g~G-G~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~----n~~---~~~l~AAl~~~q  249 (379)
T PRK11658        178 FHAIKNITCAEG-GLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGY----KYN---LADINAAIALVQ  249 (379)
T ss_pred             CCCCCcCcccCc-eEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeecccc----ccC---cCHHHHHHHHHH
Confidence            999999977665 666654 77776665432211111100000        0011121    121   246677888777


Q ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHcCCccc-cCCC-ccCCceeEEEEcCC---CCCHHHHHHHHHhhCCeEEccCCCCC-
Q 015729          268 EEGLENVIERHRRLGKATRLAVEAWGLKNC-TQKE-EWFSDTVTAVIVPS---HINSSEIVRRAWQRYNLSLGLGLNKV-  341 (401)
Q Consensus       268 ~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~-~~~~~~~~~~~~~~---~~~~~~l~~~L~~~~~i~v~~g~~~~-  341 (401)
                      ..++++..++.+++++++.+.|.+++.... .+.. ....+....+.++.   +.+.+++.+.|.++ ||.++..+.+. 
T Consensus       250 l~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~-gI~~~~~~~~~~  328 (379)
T PRK11658        250 LAKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEERCGISRDALMEALKER-GIGTGLHFRAAH  328 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCccccCCHHHHHHHHHHC-CCCCcccCcCcc
Confidence            778899999999999999999987743322 2221 12234455566642   35788999999865 88765332100 


Q ss_pred             --------------------CCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          342 --------------------AGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       342 --------------------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                                          ....+.+.++...+++|++++++.|++++
T Consensus       329 ~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~  377 (379)
T PRK11658        329 TQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIA  377 (379)
T ss_pred             cChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence                                11347776777889999999999999875

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.95  E-value=2.2e-24  Score=207.58  Aligned_cols=348  Identities=16%  Similarity=0.136  Sum_probs=237.5

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCC--------C---Ccc-HHHHHHHHHHHHHHHhcCCCCceEEe---cCChhHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDY--------R---SPA-VPALTKTLLEDIKKIFKTTSGTPFLI---PTTGTGAW   73 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~--------~---~~~-~~~~~~~l~~~la~~~g~~~~~~i~~---~~g~t~a~   73 (401)
                      ....++|+=-.+++.|++++.......        +   +.. ..++...++++..+.|+.+... +.+   +.+|+.|+
T Consensus        35 ~~l~liasen~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~-~~~nv~~~SG~~AN  113 (475)
T PLN03226         35 KGLELIASENFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEK-WGVNVQPLSGSPAN  113 (475)
T ss_pred             cCeeEecCCccCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcce-eEEecCcCchHHHH
Confidence            456677777788888988887744111        1   111 2222333455677888887644 222   47899999


Q ss_pred             HHHHhccCCCCCeEEEEcC---CcchHHHHHHH-HHcCCc--EE--EEeCC-CCCCCChHHHHHHHhccCCCCceEEEEE
Q 015729           74 ESALTNTLSPGDRIISFLI---GQFSLLWIDQQ-QRLNFN--VD--VVESD-WGEGAKLDVLASKLAADTAHTIKAICIV  144 (401)
Q Consensus        74 ~~~~~~~~~~gd~vl~~~~---~~~~~~~~~~~-~~~g~~--~~--~v~~~-~~~~~d~~~le~~~~~~~~~~~~~i~~~  144 (401)
                      ..++.++++|||+|+..+.   +|.++.+.... +..+..  +.  ....+ .++.+|++++++.+.+   .++++|++.
T Consensus       114 ~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~---~~pklIv~~  190 (475)
T PLN03226        114 FAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAML---FRPKLIIAG  190 (475)
T ss_pred             HHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhh---cCCeEEEEe
Confidence            9999999999999998543   55655421111 111121  12  22223 3567899999999875   356766553


Q ss_pred             ecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCc---ccceEEEecCCCcccCCCcceEEEecHHHHHH
Q 015729          145 HNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDE---WGIDVALTGSQKALSLPTGMGIVCASPKALEA  221 (401)
Q Consensus       145 ~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~---~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~  221 (401)
                        .+.+|...|+++|.++|++  +|+++++|++|+.|....+...   .++|+++++.||||.||.| |+++++++..+.
T Consensus       191 --~S~~s~~~D~a~i~~ia~~--~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~G-g~I~~~~~~~~~  265 (475)
T PLN03226        191 --ASAYPRDWDYARMRKIADK--VGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRG-GMIFFRKGPKPP  265 (475)
T ss_pred             --cCcCCCccCHHHHHHHHHH--cCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCCc-eEEEEchhhccc
Confidence              3447888999999999999  9999999999999876544221   2699999999999988998 899988876544


Q ss_pred             hccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Q 015729          222 SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKE  301 (401)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  301 (401)
                      +.+.  ...+.++....+. .....+.++++...++++.++++.+.+.+++...++..++++++++.|.+.|+++.....
T Consensus       266 ~~~g--~~~~~d~~~~i~~-a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~G~~l~~~~t  342 (475)
T PLN03226        266 KGQG--EGAVYDYEDKINF-AVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSKGYKLVTGGT  342 (475)
T ss_pred             ccCC--CccHHHHHHHhcc-ccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCC
Confidence            3221  1111122111110 001112345788889999999999988888889999999999999999999999876422


Q ss_pred             ccCCceeEEEEc-CCCCCHHHHHHHHHhhCCeEEccCCC-----CCCCcEEEEeec----ccCCHHHHHHHHHHHHHHHH
Q 015729          302 EWFSDTVTAVIV-PSHINSSEIVRRAWQRYNLSLGLGLN-----KVAGKVFRIGHL----GHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       302 ~~~~~~~~~~~~-~~~~~~~~l~~~L~~~~~i~v~~g~~-----~~~~~~~Ri~~~----~~~~~~di~~~~~~i~~~l~  371 (401)
                      .   ..++.+.+ +.+++..++.+.|.. .||.+..+.-     +.....+|++..    ..++++|++++.+.|.++++
T Consensus       343 ~---~hi~lv~~~~~gi~~~~~~~~L~~-~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~  418 (475)
T PLN03226        343 D---NHLVLWDLRPLGLTGSRVEKVLDL-AHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVT  418 (475)
T ss_pred             C---CCEEEEEccCCCCCHHHHHHHHHH-CCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            1   24555666 567788888888865 4999876642     123345888643    34578999999999999987


Q ss_pred             h
Q 015729          372 D  372 (401)
Q Consensus       372 ~  372 (401)
                      .
T Consensus       419 ~  419 (475)
T PLN03226        419 I  419 (475)
T ss_pred             H
Confidence            3

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.95  E-value=5.6e-25  Score=207.20  Aligned_cols=302  Identities=16%  Similarity=0.153  Sum_probs=210.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCC-C
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-G  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~  118 (401)
                      .....++++.+++++|.+.   +++++|||+|+..++.++ +++||+|+++.++|++..  ..+...|++++.++.+. +
T Consensus        17 ~~~~~~~~~~la~~~~~~~---~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~   91 (352)
T cd00616          17 GPKVREFEKAFAEYLGVKY---AVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATA--NAILLLGATPVFVDIDPDT   91 (352)
T ss_pred             CHHHHHHHHHHHHHhCCCe---EEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHH--HHHHHcCCeEEEEecCCCc
Confidence            3567899999999999743   788889999999999887 689999999999888764  44667899999999987 6


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceecc-CcccceEEEe
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRM-DEWGIDVALT  197 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~-~~~~~di~~~  197 (401)
                      +.+|+++++++++    ++++++++++   ++|...|+++|.++|++  +|+++|+|++|+.|....+. .....|+.++
T Consensus        92 ~~~d~~~l~~~i~----~~~~~v~~~~---~~G~~~~~~~i~~l~~~--~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~  162 (352)
T cd00616          92 YNIDPELIEAAIT----PRTKAIIPVH---LYGNPADMDAIMAIAKR--HGLPVIEDAAQALGATYKGRKVGTFGDAGAF  162 (352)
T ss_pred             CCcCHHHHHHhcC----cCCeEEEEEC---CCCCcCCHHHHHHHHHH--cCCeEEEECCCCCCCeECCEEcccCcceeEE
Confidence            6789999999886    3568888764   68999999999999999  99999999999988653221 0112466666


Q ss_pred             c--CCCcccCCCcceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCC-CCCCCcHHHHHHHHHHHHHHHHhcHHH
Q 015729          198 G--SQKALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTF-WPYTPSIQLLYGLRAALDLIFEEGLEN  273 (401)
Q Consensus       198 s--~~K~l~g~~g~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~a~~~al~~~~~~g~~~  273 (401)
                      |  .+|++.++.| |+++++ +++.+++.............    .+..... +....+     .+.+++......++++
T Consensus       163 S~~~~K~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-----~~~aa~~~~~l~~~~~  232 (352)
T cd00616         163 SFHPTKNLTTGEG-GAVVTNDEELAERARLLRNHGRDRDRF----KYEHEILGYNYRLS-----EIQAAIGLAQLEKLDE  232 (352)
T ss_pred             cCCCCCCCcccCc-eEEEECCHHHHHHHHHHHHcCCCCCCC----ccccceeeeccCcC-----HHHHHHHHHHHHhhHH
Confidence            6  5599955554 767665 56666554321100000000    0000000 000111     2223333333335677


Q ss_pred             HHHHHHHHHHHHHHHHHHc-CCccccCCCc-cCCceeEEEEcCC--CCCHHHHHHHHHhhCCeEEccCCCCC--------
Q 015729          274 VIERHRRLGKATRLAVEAW-GLKNCTQKEE-WFSDTVTAVIVPS--HINSSEIVRRAWQRYNLSLGLGLNKV--------  341 (401)
Q Consensus       274 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~l~~~L~~~~~i~v~~g~~~~--------  341 (401)
                      ..++.+++.+++++.|.++ |+++....+. ...+.++.+.+++  +.+..++.+.|.++ ||.+...+.+.        
T Consensus       233 ~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~-gI~~~~~~~~~~~~~~~~~  311 (352)
T cd00616         233 IIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEA-GIETRVHYPPLHHQPPYKK  311 (352)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHC-CCCeeeecCccccCHhhhh
Confidence            8888999999999999986 8887654321 2344577777754  67888999999866 88765333211        


Q ss_pred             ---------------CCcEEEEeecccCCHHHHHHHHHHHH
Q 015729          342 ---------------AGKVFRIGHLGHLNELQLLGCLAGVE  367 (401)
Q Consensus       342 ---------------~~~~~Ri~~~~~~~~~di~~~~~~i~  367 (401)
                                     ..+.+|++++..+|++|+++++++|+
T Consensus       312 ~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~  352 (352)
T cd00616         312 LLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR  352 (352)
T ss_pred             ccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence                           01569999999999999999999874

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.94  E-value=1.7e-24  Score=201.32  Aligned_cols=306  Identities=14%  Similarity=0.109  Sum_probs=211.7

Q ss_pred             CCcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeE
Q 015729            8 GKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRI   87 (401)
Q Consensus         8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~v   87 (401)
                      -+.||--..-..+.++..+++.++.      +..+...++++.+++++|.++++ +++++||++|+..++.+++++||+|
T Consensus        26 ~~~ylgl~~~~~~~~~~~~~~~~~~------g~~~~~~~Le~~lA~~~g~~~e~-ilv~~gg~~a~~~~~~al~~~gd~V   98 (346)
T TIGR03576        26 LYDLTGLAGGFKIDEEDLELLETYV------GPAIFEEKVQELGREHLGGPEEK-ILVFNRTSSAILATILALEPPGRKV   98 (346)
T ss_pred             ccccccCCCChhHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHcCCCcce-EEEECCHHHHHHHHHHHhCCCCCEE
Confidence            3567776766677777777777753      33478889999999999996544 9999999999999999999999999


Q ss_pred             EEEc---CCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc---cchHHHHH
Q 015729           88 ISFL---IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT---NNLSKVRK  161 (401)
Q Consensus        88 l~~~---~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~---~~l~~i~~  161 (401)
                      +++.   +.|.++  ...++..|+++...       .++++++.  .    +++++|+++. ++++|.+   .++++|.+
T Consensus        99 li~~~d~p~~~s~--~~~~~l~ga~~~~~-------~~l~~l~~--~----~~~~lIiitg-~s~~G~v~~~~~L~~i~~  162 (346)
T TIGR03576        99 VHYLPEKPAHPSI--PRSCKLAGAEYFES-------DELSELKK--I----DGTSLVVITG-STMDLKVVSEEDLKRVIK  162 (346)
T ss_pred             EECCCCCCCchhH--HHHHHHcCCEEecc-------CCHHHHhh--C----cCceEEEEEC-CCCCCcccCHHHHHHHHH
Confidence            9753   344443  34567778865332       14554432  1    2467777764 6889998   47888999


Q ss_pred             HhhhcCCCcEEEEecccccCcce-ec---cCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHH
Q 015729          162 LLDEYRHPALFLVDGVSSICAID-FR---MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDY  237 (401)
Q Consensus       162 l~~~~~~~~~li~D~a~~~~~~~-~~---~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  237 (401)
                      +|++  +|+++++|++|+.+... .+   ....+.|+++.|.+|++.|.. .|++++++++++.+.....          
T Consensus       163 la~~--~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKalaG~r-~G~v~~~~~li~~l~~~~~----------  229 (346)
T TIGR03576       163 QAKS--KEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMDGPR-GGLLAGRKELVDKIKSVGE----------  229 (346)
T ss_pred             HHHH--cCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhccccc-eEEEEeCHHHHHHHHHhhc----------
Confidence            9999  99999999999976432 11   122357899999999886565 5999999998887765321          


Q ss_pred             HHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCC
Q 015729          238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI  317 (401)
Q Consensus       238 ~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~  317 (401)
                              .+..+.+...++++.++++...   .+..++.++++.+.+.+.++++  .+..+    ..+ +++++++. .
T Consensus       230 --------~~~~s~~~~~~~aa~~aL~~~~---~~~~~~~l~~r~~~~~~~l~~~--~~~~~----~~~-f~~~~~~~-~  290 (346)
T TIGR03576       230 --------QFGLEAQAPLLAAVVRALEEFE---LSRIRDAFKRKEEVYLRLFDKL--NVERT----PTG-FVIKGVEE-E  290 (346)
T ss_pred             --------CcccCccHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHhC--CCCcC----CCe-EEEEeCCC-C
Confidence                    1122344545566677776432   2455667777777777777743  33321    133 56677743 2


Q ss_pred             CHHHHHHHHHhhCCeEEccCCCC-CCCcEEEEeecccCCHH---HHHHHHHHHHHHH
Q 015729          318 NSSEIVRRAWQRYNLSLGLGLNK-VAGKVFRIGHLGHLNEL---QLLGCLAGVEMIL  370 (401)
Q Consensus       318 ~~~~l~~~L~~~~~i~v~~g~~~-~~~~~~Ri~~~~~~~~~---di~~~~~~i~~~l  370 (401)
                      +..+++..++++.||.+++++.. ..++++||++..  .++   +.+.++++|++.+
T Consensus       291 ~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~--~~~~~~~~~~~~~al~~~~  345 (346)
T TIGR03576       291 KLIEIGLDLLRNYGIITITAVGMPGASKTLRFDLAA--KDAERIGDDYLVEAVKDSL  345 (346)
T ss_pred             CHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEEEec--ChHHhcCHHHHHHHHHhcc
Confidence            34456666666679999998643 236799997765  333   7999999998765

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.94  E-value=2.2e-24  Score=206.18  Aligned_cols=290  Identities=19%  Similarity=0.189  Sum_probs=206.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCC-CeEEEEcCCcchHHHHHHHHHcCC------------
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG-DRIISFLIGQFSLLWIDQQQRLNF------------  108 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~g-d~vl~~~~~~~~~~~~~~~~~~g~------------  108 (401)
                      ....++.+.++++++.+..+.+++++||++|++.++.....+| ++|+..+++||+...... ...|.            
T Consensus        85 ~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~  163 (398)
T PRK03244         85 EPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGAL-ALTGQPAKRAPFEPLPG  163 (398)
T ss_pred             HHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHH-hccCCcccccCCCCCCC
Confidence            3446899999999886543569999999999999987544454 567777777777653221 11121            


Q ss_pred             cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHhhhcCCCcEEEEecccccCcc-
Q 015729          109 NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-  183 (401)
Q Consensus       109 ~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~-  183 (401)
                      ++..++.     .|++++++.+.    +++++|+++.++|++|.+.|    +++|.++|++  +|+++|+|++|+.... 
T Consensus       164 ~~~~~~~-----~d~~~l~~~~~----~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~--~~~llI~DEv~~g~gr~  232 (398)
T PRK03244        164 GVEHVPY-----GDVDALAAAVD----DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDR--HGALLVLDEVQTGIGRT  232 (398)
T ss_pred             CceEeCC-----CCHHHHHHhhc----CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHH--cCCEEEEeccccCCccc
Confidence            2233322     27899998885    36799999999999999987    8899999999  9999999999863211 


Q ss_pred             ----eeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHH
Q 015729          184 ----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGL  259 (401)
Q Consensus       184 ----~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~  259 (401)
                          .+......+|++++  +|+++++.++|+++.++++.+.+.....                +  ..++.++..+++.
T Consensus       233 g~~~~~~~~~~~pDi~t~--sK~l~~G~~ig~~~~~~~~~~~~~~~~~----------------~--~t~~~~~~~~aaa  292 (398)
T PRK03244        233 GAWFAHQHDGVTPDVVTL--AKGLGGGLPIGACLAFGPAADLLTPGLH----------------G--STFGGNPVACAAA  292 (398)
T ss_pred             chHHhhhhhCCCCCEEEE--chhhhCCcccEEEEEcHHHHhhccCCCC----------------c--CCCCCCHHHHHHH
Confidence                11222334787766  4999876778999999998776643211                1  1234556667777


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCC
Q 015729          260 RAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLN  339 (401)
Q Consensus       260 ~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~  339 (401)
                      .++++.+.+.   +..++..++.+++++.|++++++......  ..+.++++.++.. ...++.+.|.++ ||.+.+.  
T Consensus       293 ~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~v~--g~g~~~~i~~~~~-~~~~~~~~l~~~-Gv~~~~~--  363 (398)
T PRK03244        293 LAVLDTIASE---GLLENAERLGEQLRAGIEALGHPLVDHVR--GRGLLLGIVLTAP-VAKAVEAAAREA-GFLVNAV--  363 (398)
T ss_pred             HHHHHHHHhc---cHHHHHHHHHHHHHHHHHhcCCCceeeEe--eccEEEEEEEecc-HHHHHHHHHHHC-CeEEeec--
Confidence            7887776654   36677888889999999887654322111  2456788888532 466788888876 9998763  


Q ss_pred             CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          340 KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       340 ~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                        ..+.+||++...++++|+++++++|+++++++.
T Consensus       364 --~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~~  396 (398)
T PRK03244        364 --APDVIRLAPPLIITDAQVDAFVAALPAILDAAA  396 (398)
T ss_pred             --CCCEEEEECCCcCCHHHHHHHHHHHHHHHHhcc
Confidence              246899998888999999999999999997653

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.94  E-value=1.3e-24  Score=209.09  Aligned_cols=298  Identities=18%  Similarity=0.115  Sum_probs=210.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--CCCCCeEEEEcCCcchHHHHHHHHHc-----------C
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFSLLWIDQQQRL-----------N  107 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~-----------g  107 (401)
                      .+...++.+.++++++.+. +.+++++||++|++.++..+  +.++++|++.+++|++..........           .
T Consensus        78 ~~~~~~l~~~l~~~~~~~~-~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~  156 (413)
T cd00610          78 NEPAVELAELLLALTPEGL-DKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLL  156 (413)
T ss_pred             CHHHHHHHHHHHHhCCCCC-CEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCC
Confidence            5678899999999998643 35999999999999988764  46789999999988886532221111           1


Q ss_pred             CcEEEEeCCCC------CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHhhhcCCCcEEEEecc
Q 015729          108 FNVDVVESDWG------EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGV  177 (401)
Q Consensus       108 ~~~~~v~~~~~------~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a  177 (401)
                      .+++.++.+..      ...|++.+++.+++.. ++++++++++.++++|.+.+    +++|.++|++  +|+++|+|++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~--~~~~li~Dev  233 (413)
T cd00610         157 PGVLHVPYPYRYRPPAELADDLEALEEALEEHP-EEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRK--HGILLIADEV  233 (413)
T ss_pred             CCcEEeCCCccccchhhHHHHHHHHHHHHhcCC-CCEEEEEEccccCCCCCccCCHHHHHHHHHHHHH--cCCEEEEecc
Confidence            24556665521      2337899999887532 35788888888888999887    8999999999  9999999999


Q ss_pred             cccCcc-----eeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCc
Q 015729          178 SSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPS  252 (401)
Q Consensus       178 ~~~~~~-----~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  252 (401)
                      |+....     ..+.....+|++++  +|+++++.++|+++.++++.+.+.....                .....++.+
T Consensus       234 ~~g~g~~g~~~~~~~~~~~~d~~t~--sK~l~~g~~~g~~~~~~~~~~~~~~~~~----------------~~~~t~~~~  295 (413)
T cd00610         234 QTGFGRTGKMFAFEHFGVEPDIVTL--GKGLGGGLPLGAVLGREEIMDAFPAGPG----------------LHGGTFGGN  295 (413)
T ss_pred             ccCCCcCcchhhHhhcCCCCCeEEE--cccccCccccEEEEEcHHHHHhhccCCC----------------CCCCCCCcC
Confidence            874311     11222234566654  5999876778999999998887611000                001133455


Q ss_pred             HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCC--ccccCCCccCCceeEEEEcCCC--------CCHHHH
Q 015729          253 IQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGL--KNCTQKEEWFSDTVTAVIVPSH--------INSSEI  322 (401)
Q Consensus       253 ~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~--~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l  322 (401)
                      ...++++.++++.+.+.   ...++..++.+++++.|+++..  ......  ...+.++++.+++.        ....++
T Consensus       296 ~~~~~a~~a~l~~l~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~  370 (413)
T cd00610         296 PLACAAALAVLEVLEEE---GLLENAAELGEYLRERLRELAEKHPLVGDV--RGRGLMIGIELVKDRATKPPDKELAAKI  370 (413)
T ss_pred             HHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhhCCcEEEe--ecCceEEEEEEecCCCcCCcchHHHHHH
Confidence            66677888888887663   4677888888899988887622  222111  12346777777543        345678


Q ss_pred             HHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          323 VRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       323 ~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      .+.|.++ ||.+.++.    ++.+|+++...++++|++++++++++++
T Consensus       371 ~~~l~~~-gv~v~~~~----~~~lR~~~~~~~t~~~i~~~~~~l~~~l  413 (413)
T cd00610         371 IKAALER-GLLLRPSG----GNVIRLLPPLIITEEEIDEGLDALDEAL  413 (413)
T ss_pred             HHHHHHC-CeEEeecC----CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence            8888876 99998764    5689999888889999999999998753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.94  E-value=1.5e-24  Score=187.66  Aligned_cols=348  Identities=17%  Similarity=0.128  Sum_probs=259.9

Q ss_pred             CcccccCCCcCChHHHHHHHcc----Cc----CC---CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNR----NN----ED---YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL   77 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~----~~----~~---~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~   77 (401)
                      ..||.+..=...++++.....+    .+    ..   .....+.++-..+-.+++.++|....+ ++++.+.+--+...+
T Consensus        32 viyLdgnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~E-vvv~dtts~nl~k~L  110 (407)
T COG3844          32 VIYLDGNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAGE-VVVTDTTSINLFKVL  110 (407)
T ss_pred             eEEeeccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCCc-eEEeCCcchHHHHHH
Confidence            6777777644444333332222    11    11   124567777888999999999998876 778888777777777


Q ss_pred             hccC--CCCCeEEEEcCCcchHH---HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccc
Q 015729           78 TNTL--SPGDRIISFLIGQFSLL---WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV  152 (401)
Q Consensus        78 ~~~~--~~gd~vl~~~~~~~~~~---~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~  152 (401)
                      .+.+  ++|++|+++.-..|+..   ...++...+..     .+-...++|.++++.++.    .+.++++++++.-||.
T Consensus       111 ~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~-----~~~~~~~~P~~~~~~~~d----d~AvV~L~~V~y~TGq  181 (407)
T COG3844         111 AAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG-----YDLEGVIAPRALEEAITD----DVAVVLLSHVNYKTGQ  181 (407)
T ss_pred             HHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc-----ccceeeeChHHHHHhhcc----ceEEEEeccccccccc
Confidence            6654  45889999987667654   22344444432     333345678899999985    5689999999999999


Q ss_pred             ccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcc-eEEEecHHHHHHhccCCCCccc
Q 015729          153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGM-GIVCASPKALEASKTAKSVRVF  231 (401)
Q Consensus       153 ~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~-G~l~~~~~~~~~~~~~~~~~~~  231 (401)
                      ..++.+|..++++  +|++++.|-+|+.|..+.+....|+|+.+++++|+++|++|. +++++.++..++..+.....+.
T Consensus       182 l~dm~aiT~~AH~--~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~g  259 (407)
T COG3844         182 LLDMRAITALAHQ--HGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWG  259 (407)
T ss_pred             eeeHHHHHHHHHh--cCceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCCceeEEeccccccccccccccccC
Confidence            9999999999999  999999999999999999999999999999999999998875 8999998886665443322111


Q ss_pred             cchH-HHHHHhhc----CCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc----CCccccCCCc
Q 015729          232 FDWK-DYIKFYNL----GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEE  302 (401)
Q Consensus       232 ~~~~-~~~~~~~~----g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~  302 (401)
                      ..-. .+...|..    ..+..+++++..++++..+|+.+.+.++...+++...++.++-+.++..    ++.+..+-..
T Consensus       260 ha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~  339 (407)
T COG3844         260 HARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAH  339 (407)
T ss_pred             CCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchh
Confidence            1100 01112221    1334456999999999999999999889999999999999999999875    5666666545


Q ss_pred             cCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecc-cCCHHHHHHHHHHHHHHHHhcCCC
Q 015729          303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNELQLLGCLAGVEMILKDVGYP  376 (401)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~-~~~~~di~~~~~~i~~~l~~~~~~  376 (401)
                      ...+..+++..|   ....+.+.|.++ ||..-    ...++.+||++.. +++-+|+=.+++.|+++|+....+
T Consensus       340 ~~rGsqvS~~hp---~~~~V~qaLi~r-GVigD----~R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~a~~  406 (407)
T COG3844         340 EERGSQVSLYHP---HGYQVMQALIDR-GVIGD----FREPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTLAWQ  406 (407)
T ss_pred             hhccceeeEecC---cHHHHHHHHHHc-Ccccc----ccCCCeeeecCccceechhHHHHHHHHHHHHHHhhccC
Confidence            566778888887   568899999877 87632    3357789999877 788999999999999999876543

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.94  E-value=1.2e-24  Score=205.56  Aligned_cols=301  Identities=15%  Similarity=0.066  Sum_probs=203.2

Q ss_pred             CChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHh----cCC--CCceEEecCChhHHHHHHHhcc-CCCCCeEEEEc
Q 015729           19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF----KTT--SGTPFLIPTTGTGAWESALTNT-LSPGDRIISFL   91 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~--~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~   91 (401)
                      +.++.+.+++.+.... ..+.......++++.+++++    |.+  .++++++|+|+++++..++..+ +++||+|+++.
T Consensus        40 ~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~  118 (364)
T PRK07865         40 PVPPVIQEALAAAADA-PGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPE  118 (364)
T ss_pred             CCCHHHHHHHHHHHhh-CCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcCCCCCEEEECC
Confidence            3356777777653321 22333344557777777776    432  2356999999999999877776 79999999999


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccch---HHHHHHhhhcCC
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLLDEYRH  168 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l---~~i~~l~~~~~~  168 (401)
                      |+|+.+.  ..++..|++++.++       ++++++.       ++++++++++++||||.+++.   ++|.++|++  +
T Consensus       119 p~y~~~~--~~~~~~g~~~~~~~-------~~~~l~~-------~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~--~  180 (364)
T PRK07865        119 LAYPTYE--VGARLAGATVVRAD-------SLTELGP-------QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARE--R  180 (364)
T ss_pred             CCcccHH--HHHHhcCCEEEecC-------ChhhCCc-------ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHH--c
Confidence            9877654  45677899888774       2233221       357899999999999999874   567788888  9


Q ss_pred             CcEEEEecccccCcce---e---cc----CcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHH
Q 015729          169 PALFLVDGVSSICAID---F---RM----DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDY  237 (401)
Q Consensus       169 ~~~li~D~a~~~~~~~---~---~~----~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  237 (401)
                      |++||+|++|......   .   +.    ......+++.|.+|.++ .+.++|+++.++++.+.+...+.          
T Consensus       181 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~~~~~~~~~~~~----------  250 (364)
T PRK07865        181 GAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDPALVAELLEVRK----------  250 (364)
T ss_pred             CCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEecCHHHHHHHHHHHH----------
Confidence            9999999998743211   0   10    01234689999999983 23447999999988776653210          


Q ss_pred             HHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCC
Q 015729          238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI  317 (401)
Q Consensus       238 ~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~  317 (401)
                              ....+.+.....++.++++.  ...+++.++.+.++++.+.+.|++.|+.+..+    ..+.++|+.++  .
T Consensus       251 --------~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~~~~--~  314 (364)
T PRK07865        251 --------HAGMMVPAPVQAAMVAALGD--DAHVREQRERYARRRAVLRPALEAAGFRVDHS----EAGLYLWATRG--E  314 (364)
T ss_pred             --------hcCCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC----CccEEEEEeCC--C
Confidence                    00112334333333344432  12256677888889999999998888765543    24456777663  3


Q ss_pred             CHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHH
Q 015729          318 NSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVE  367 (401)
Q Consensus       318 ~~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~  367 (401)
                      +..++.+.|.++ ||.+.+|...  ...+++||++..  +++++++++++|+
T Consensus       315 ~~~~~~~~l~~~-gv~v~pg~~f~~~~~~~iRi~~~~--~~~~~~~~~~~l~  363 (364)
T PRK07865        315 DCWDTVAWLAER-GILVAPGDFYGPAGAQHVRVALTA--TDERIAAAVERLA  363 (364)
T ss_pred             CHHHHHHHHHHC-CEEEeCccccCcCCCCEEEEEecC--CHHHHHHHHHHhh
Confidence            566788888655 9999988432  235689998876  6899999999885

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.94  E-value=1.4e-24  Score=202.07  Aligned_cols=269  Identities=15%  Similarity=0.095  Sum_probs=193.9

Q ss_pred             HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCCh
Q 015729           44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKL  123 (401)
Q Consensus        44 ~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~  123 (401)
                      ..++|+.+++++|.+++ .+++++|+++++..+... +.+| +|++.+|+|..+  ...++..|++++.++       |+
T Consensus        49 ~~~lr~~la~~~~~~~~-~i~~t~G~~~~i~~~~~~-l~~g-~vl~~~p~y~~~--~~~~~~~g~~~~~~~-------d~  116 (330)
T TIGR01140        49 YDELRAAAAAYYGLPAA-SVLPVNGAQEAIYLLPRL-LAPG-RVLVLAPTYSEY--ARAWRAAGHEVVELP-------DL  116 (330)
T ss_pred             HHHHHHHHHHHhCCChh-hEEECCCHHHHHHHHHHH-hCCC-eEEEeCCCcHHH--HHHHHHcCCEEEEeC-------CH
Confidence            38999999999998643 499999999999986544 6777 799988876654  356778899988887       78


Q ss_pred             HHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEEEEecccccCcceecc----CcccceEEE
Q 015729          124 DVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAIDFRM----DEWGIDVAL  196 (401)
Q Consensus       124 ~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~----~~~~~di~~  196 (401)
                      +.+++.++     +++++++++|+||||.+++   +++|.++|++  +|++||+|++|.......+.    +..+.++++
T Consensus       117 ~~l~~~~~-----~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~  189 (330)
T TIGR01140       117 DRLPAALE-----ELDVLVLCNPNNPTGRLIPPETLLALAARLRA--RGGWLVVDEAFIDFTPDASLAPQAARFPGLVVL  189 (330)
T ss_pred             HHHHhhcc-----cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHh--cCCEEEEECcccccCCccchhhHhccCCCEEEE
Confidence            89988874     3578999999999999998   4556677777  99999999998644322111    123467999


Q ss_pred             ecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhc-HHHH
Q 015729          197 TGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENV  274 (401)
Q Consensus       197 ~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g-~~~~  274 (401)
                      .|.+|+++ .+.++|++++++++.+.+.....                    .++.+..   ++.++.+.+...+ .+..
T Consensus       190 ~S~SK~~g~~G~R~G~i~~~~~~~~~l~~~~~--------------------~~~~s~~---~q~~~~~~l~~~~~~~~~  246 (330)
T TIGR01140       190 RSLTKFFGLAGLRLGFVVAHPALLARLREALG--------------------PWTVNGP---ARAAGRAALADTAWQAAT  246 (330)
T ss_pred             EecchhhcCchhhhhheeCCHHHHHHHHhcCC--------------------CCCchHH---HHHHHHHHHhchHHHHHH
Confidence            99999985 22346999999998877764311                    1123333   3344444444433 4567


Q ss_pred             HHHHHHHHHHHHHHHHHcC-CccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeec
Q 015729          275 IERHRRLGKATRLAVEAWG-LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHL  351 (401)
Q Consensus       275 ~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~  351 (401)
                      +++++++.+.+.+.|++++ +++..     ..+.++|+.++   +..++++.|.++ ||.+.+|...  ...+++||++.
T Consensus       247 ~~~~~~~~~~l~~~L~~~~~~~~~~-----~~~~f~~~~~~---~~~~l~~~l~~~-gi~v~pg~~f~~~~~~~iRi~~~  317 (330)
T TIGR01140       247 RARLAAERARLAALLARLGGLEVVG-----GTALFLLVRTP---DAAALHEALARR-GILIRDFDNFPGLDPRYLRFALP  317 (330)
T ss_pred             HHHHHHHHHHHHHHHHhCCCceECC-----CCCeEEEEEcC---CHHHHHHHHHHC-CEEEEECCCCCCCCCCEEEEEec
Confidence            8888999999999999875 44332     13357777774   357899999875 9999999553  23468999776


Q ss_pred             ccCCHHHHHHHHHHH
Q 015729          352 GHLNELQLLGCLAGV  366 (401)
Q Consensus       352 ~~~~~~di~~~~~~i  366 (401)
                      .  ..++ +++++++
T Consensus       318 ~--~~~~-~~~~~~l  329 (330)
T TIGR01140       318 T--DEEN-DRLEEAL  329 (330)
T ss_pred             C--HHHH-HHHHHhh
Confidence            4  3355 8887776

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1.4e-24  Score=209.30  Aligned_cols=321  Identities=17%  Similarity=0.103  Sum_probs=200.4

Q ss_pred             ccHHHHHHHHHHHHHHHh------cC-CC--CceEEecCChhHHHHHHHhc-----cCCCCCeEEEEcCCcchHHHHHHH
Q 015729           38 PAVPALTKTLLEDIKKIF------KT-TS--GTPFLIPTTGTGAWESALTN-----TLSPGDRIISFLIGQFSLLWIDQQ  103 (401)
Q Consensus        38 ~~~~~~~~~l~~~la~~~------g~-~~--~~~i~~~~g~t~a~~~~~~~-----~~~~gd~vl~~~~~~~~~~~~~~~  103 (401)
                      |.......++++.+++.+      +. .+  +++|++|+|+++|+..++.+     +++|||+|++++|.|+.+.  ..+
T Consensus       130 Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~--~~~  207 (527)
T PRK09275        130 YPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYL--EIP  207 (527)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHH--HHH
Confidence            333445556777776633      11 12  33699999999999988765     7899999999999877654  344


Q ss_pred             HHc--CCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEEEEec
Q 015729          104 QRL--NFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDG  176 (401)
Q Consensus       104 ~~~--g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li~D~  176 (401)
                      +..  +++++.++.++  ++.+|+++++++++    +++|++++++|+||||.+++   +++|+++|+++++|++||+|+
T Consensus       208 ~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~----~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DE  283 (527)
T PRK09275        208 ELPRYDLEVVHINADEENEWQYPDSELEKLRD----PSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDD  283 (527)
T ss_pred             HHcCCCeEEEEeecCcccCCCCCHHHHHhhcC----CCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECC
Confidence            444  45556665543  46789999999776    47799999999999999998   566788886644799999999


Q ss_pred             ccccCccee-ccC--cccceEEEecCCCccc-CCCcceEEEecHH-----HHHHhccCCCC---ccc-------------
Q 015729          177 VSSICAIDF-RMD--EWGIDVALTGSQKALS-LPTGMGIVCASPK-----ALEASKTAKSV---RVF-------------  231 (401)
Q Consensus       177 a~~~~~~~~-~~~--~~~~di~~~s~~K~l~-g~~g~G~l~~~~~-----~~~~~~~~~~~---~~~-------------  231 (401)
                      +|......+ ...  .....+++.|.+|.++ ++-.+|+++++++     +++.+......   .-|             
T Consensus       284 vY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fi  363 (527)
T PRK09275        284 VYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFI  363 (527)
T ss_pred             CChhhcccccCHHHhCCCCEEEEeehhhhccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhH
Confidence            987433111 111  1135688899999984 2334699999876     33333110000   000             


Q ss_pred             ----cchHHHHHHhhcCCCCCCCCcHHHHH-HHHHHHHHHHH--hcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccC
Q 015729          232 ----FDWKDYIKFYNLGTFWPYTPSIQLLY-GLRAALDLIFE--EGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWF  304 (401)
Q Consensus       232 ----~~~~~~~~~~~~g~~~~~~~~~~~~~-a~~~al~~~~~--~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~  304 (401)
                          .+......+...+     .+.+.+.+ ++-++...+..  ...+..++.++++++.+.+.|   |+.+....+  .
T Consensus       364 drlvad~~~v~~~~t~~-----~s~p~Q~a~al~~~~all~~~~~~~~~~~~~~~~Rr~~l~~~L---g~~~~~~~p--~  433 (527)
T PRK09275        364 DRLVADSRQVALNHTAG-----LSTPQQVQMALFSLFALLDEEDAYKKAMKDIIRRRYKALYEGL---GLPEPEDPN--N  433 (527)
T ss_pred             HHHHHHHHHHHHhhccC-----CCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHc---CCCCcCCCC--C
Confidence                0001111111112     23333322 21111222211  124456666777777666665   443321111  2


Q ss_pred             CceeEEEEcCC----------------CCCHHHHHHHHHhhCCeEEccCCCCC-CCcEEEEeecccCCHHHHHHHHHHHH
Q 015729          305 SDTVTAVIVPS----------------HINSSEIVRRAWQRYNLSLGLGLNKV-AGKVFRIGHLGHLNELQLLGCLAGVE  367 (401)
Q Consensus       305 ~~~~~~~~~~~----------------~~~~~~l~~~L~~~~~i~v~~g~~~~-~~~~~Ri~~~~~~~~~di~~~~~~i~  367 (401)
                      ...++++.++.                ..+..+++.+|.++.||.+.||.... ..+++|+|+. ..+++++.++.++|+
T Consensus       434 g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis~a-~~~~~~~~~~~~rl~  512 (527)
T PRK09275        434 AAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVLLPGGGFGGPEWSVRVSLA-NLNEEDYAKIGKAIR  512 (527)
T ss_pred             eeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEEeCchhhCCCCCeEEEEEe-cCCHHHHHHHHHHHH
Confidence            44566666632                12567889999988899999995532 3467999764 368999999999999


Q ss_pred             HHHHhcCC
Q 015729          368 MILKDVGY  375 (401)
Q Consensus       368 ~~l~~~~~  375 (401)
                      +++++...
T Consensus       513 ~~l~~y~~  520 (527)
T PRK09275        513 KLLDEYYE  520 (527)
T ss_pred             HHHHHHHH
Confidence            99886543

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=2.4e-24  Score=201.02  Aligned_cols=308  Identities=13%  Similarity=0.065  Sum_probs=209.7

Q ss_pred             cccccCC-CcCChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCe
Q 015729           10 NHLFVPG-PVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR   86 (401)
Q Consensus        10 ~~~~~~~-p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~   86 (401)
                      .++...- |.+.++.+++++.+....  ...+. .....++|+.+++++|.+++ ++++++|+++++..++..+  +||+
T Consensus        21 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~g~~~lr~~ia~~~~~~~~-~I~~t~G~~~~l~~~~~~~--~gd~   96 (337)
T PRK03967         21 IWLDKNENPFDLPEELKEEIFEELKRVPFNRYP-HITSDPLREAIAEFYGLDAE-NIAVGNGSDELISYLVKLF--EGKH   96 (337)
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHhhcCccccCC-CCCHHHHHHHHHHHhCcCcc-eEEEcCCHHHHHHHHHHHh--CCCe
Confidence            3444443 446777788887764321  11222 23567899999999998664 5999999999998877654  7999


Q ss_pred             EEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhc
Q 015729           87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY  166 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~  166 (401)
                      |+++.|+|..+  ...++..|++++.++.+.++.+|++.+++..     .+++++++++|+||||.+++.++|.+++ + 
T Consensus        97 V~v~~P~y~~~--~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~-----~~~~~v~~~~P~NPtG~~~~~~~l~~i~-~-  167 (337)
T PRK03967         97 IVITPPTFGMY--SFYAKLNGIPVIDVPLKEDFTIDGERIAEKA-----KNASAVFICSPNNPTGNLQPEEEILKVL-E-  167 (337)
T ss_pred             EEEeCCChHHH--HHHHHHcCCeEEEeecCCCCCcCHHHHHHhc-----cCCCEEEEeCCCCCCCCCCCHHHHHHHH-h-
Confidence            99999977643  3456789999999999877788999998764     2568899999999999999999999998 4 


Q ss_pred             CCCcEEEEecccccCcc-e-ec-cCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhh
Q 015729          167 RHPALFLVDGVSSICAI-D-FR-MDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYN  242 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~-~-~~-~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (401)
                       +++++|+|++|..... . .. .......+++.|.+|.++ .+.++|++++++++.+.+.....               
T Consensus       168 -~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~~~~~~~~---------------  231 (337)
T PRK03967        168 -TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIIDALYRIKP---------------  231 (337)
T ss_pred             -cCCEEEEECchhhhcccchHHHHhhCCCEEEEecchHhhcchhhhheeeecCHHHHHHHHhhcC---------------
Confidence             7899999999864321 0 00 111123688899999995 34457999999988777654321               


Q ss_pred             cCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHH
Q 015729          243 LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEI  322 (401)
Q Consensus       243 ~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  322 (401)
                           .++.+.....++..+++..  +.+.+.+++..+.++.+.+.|.+..   . +    ..+.++++.++       +
T Consensus       232 -----~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~~---~-~----~~~~~~~~~~~-------~  289 (337)
T PRK03967        232 -----PFSLNILTMKIVRLALDHY--DLIEERIDYIIKERERVRRELGEYA---Y-P----SDANFLLLKLD-------A  289 (337)
T ss_pred             -----CCCCCHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHhccCc---C-C----CCCcEEEEhHH-------H
Confidence                 1123444444444444321  1233444555566666666665531   1 1    13346666552       5


Q ss_pred             HHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          323 VRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       323 ~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .+.|.++ ||.++++.. ...+++||++.   +.++.++++++|+.+...-
T Consensus       290 ~~~l~~~-gi~v~~~~~-~~~~~~Ri~~~---~~~~~~~l~~~l~~~~~~~  335 (337)
T PRK03967        290 YDYLLEN-GIVVRKLSG-RLEGHIRVTVG---KREENDEFIKALKEIKEGY  335 (337)
T ss_pred             HHHHHHC-CEEEEeCCC-CCCCeEEEecC---CHHHHHHHHHHHHHHHHhc
Confidence            6777765 999986532 23568999754   5777888888888776543

>PRK10534 L-threonine aldolase; Provisional

Probab=99.94  E-value=3e-24  Score=200.55  Aligned_cols=312  Identities=14%  Similarity=0.067  Sum_probs=205.7

Q ss_pred             CCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcc
Q 015729           16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF   95 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~   95 (401)
                      +|. ++|.+++++.........+.......++++.+++++|.++   +++++||++++..++.+.+.+||+|+++.+.|.
T Consensus         9 ~~~-p~~~~~~a~~~~~~~~~~Y~~~~~~~~L~~~la~~~g~~~---~~v~~~g~~a~~~~l~~~~~~gd~vi~~~~~~~   84 (333)
T PRK10534          9 VTR-PSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAAELSGKEA---ALFLPTGTQANLVALLSHCERGEEYIVGQAAHN   84 (333)
T ss_pred             CCC-CCHHHHHHHHhccCCCcccCCCHHHHHHHHHHHHHhCCCe---EEEeCchHHHHHHHHHHhcCCCCeeEEechhhh
Confidence            455 6788999987744444334456778899999999999866   567888898888888788899999998877654


Q ss_pred             hHHHHHHHHHc-CCcEEEEeCCCCCCCChHHHHHHHhccCC--CCceEEEEEecCCCcccccchHHH---HHHhhhcCCC
Q 015729           96 SLLWIDQQQRL-NFNVDVVESDWGEGAKLDVLASKLAADTA--HTIKAICIVHNETATGVTNNLSKV---RKLLDEYRHP  169 (401)
Q Consensus        96 ~~~~~~~~~~~-g~~~~~v~~~~~~~~d~~~le~~~~~~~~--~~~~~i~~~~~~n~tG~~~~l~~i---~~l~~~~~~~  169 (401)
                      ..+....+... +++++.++.+.++.+|+++++++++++..  .+++++++++|+  +|.+.|.++|   .++|++  ++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~--~~  160 (333)
T PRK10534         85 YLYEAGGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREYLKQAWEFTRE--RN  160 (333)
T ss_pred             hHhcCCchHHhcCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHHHHHHHHHHHHH--cC
Confidence            32211112233 36778888777788999999998864210  046899998655  5999987655   567777  89


Q ss_pred             cEEEEecccccCccee-ccC----cccceEEEecCCCcccCCCcce-EEEecHHHHHHhccCCCCccccchHHHHHHhhc
Q 015729          170 ALFLVDGVSSICAIDF-RMD----EWGIDVALTGSQKALSLPTGMG-IVCASPKALEASKTAKSVRVFFDWKDYIKFYNL  243 (401)
Q Consensus       170 ~~li~D~a~~~~~~~~-~~~----~~~~di~~~s~~K~l~g~~g~G-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (401)
                      ++|++|++|.++.... +..    ....|.++.|.+|.++.+  +| +++.++++++.+.....            .  .
T Consensus       161 ~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~--~G~~~~~~~~~i~~~~~~~~------------~--~  224 (333)
T PRK10534        161 LALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTP--VGSLLVGNRDYIKRARRWRK------------M--T  224 (333)
T ss_pred             CeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCc--ccceEEcCHHHHHHHHHHHH------------H--h
Confidence            9999999977532110 100    112355556889987533  56 68788988776653210            0  0


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHH
Q 015729          244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIV  323 (401)
Q Consensus       244 g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  323 (401)
                      +.    ..+... .++.+++..+..  .....++..++++++.+.|+++|+++..+    .. .++++++++ .+..++.
T Consensus       225 ~~----~~~~~~-~~~a~~~~~l~~--~~~~~~~~~~~r~~l~~~L~~~g~~~~~~----~~-nfv~~~~~~-~~~~~~~  291 (333)
T PRK10534        225 GG----GMRQAG-ILAAAGLYALKH--NVARLQEDHDNAAWLAEQLREAGADVMRQ----DT-NMLFVRVGE-EQAAALG  291 (333)
T ss_pred             CC----chhhHH-HHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhCCCccCCC----Cc-eEEEEECCc-hhHHHHH
Confidence            10    111111 112222222221  12344445567789999999988876643    23 466777753 3467888


Q ss_pred             HHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          324 RRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       324 ~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      +.|.++ ||.++++      .++|++.+..+|++++++++++|++.+.
T Consensus       292 ~~l~~~-gi~v~~~------~~~rl~~~~r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        292 EYMRER-NVLINAS------PIVRLVTHLDVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             HHHHHc-CeeecCC------ceEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence            878766 9999765      2578887666799999999999987653

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.94  E-value=3e-24  Score=206.72  Aligned_cols=301  Identities=16%  Similarity=0.103  Sum_probs=189.1

Q ss_pred             eEEecCChhHHHHHHHhc-----cCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC-------CCCChHHHHHH
Q 015729           62 PFLIPTTGTGAWESALTN-----TLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-------EGAKLDVLASK  129 (401)
Q Consensus        62 ~i~~~~g~t~a~~~~~~~-----~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-------~~~d~~~le~~  129 (401)
                      ++++|+|+++|+..++.+     ++.|||+|++++|.|+.+.........|++++.++.+..       +.+|+++++++
T Consensus       157 ~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~  236 (521)
T TIGR03801       157 DLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKL  236 (521)
T ss_pred             eEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHh
Confidence            699999999999988766     789999999999987765421112334778888887542       67899999987


Q ss_pred             HhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEEEEecccccCccee-ccC--cccceEEEecCCCcc
Q 015729          130 LAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAIDF-RMD--EWGIDVALTGSQKAL  203 (401)
Q Consensus       130 ~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~~~~~~-~~~--~~~~di~~~s~~K~l  203 (401)
                      ++    +++|++++++|+||||.+++   +++|.++|++|+++++||+|++|+.....+ ...  .....+++.|.+|++
T Consensus       237 ~~----~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~f  312 (521)
T TIGR03801       237 RD----PSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYF  312 (521)
T ss_pred             cC----CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhc
Confidence            65    46799999999999999997   566788888854599999999987432111 111  112468899999998


Q ss_pred             c-CCCcceEEEecHH-----HHHHhccCCCC---ccccc---------hHHHH----HHhhcCCCCCCCCcHHHH-HHHH
Q 015729          204 S-LPTGMGIVCASPK-----ALEASKTAKSV---RVFFD---------WKDYI----KFYNLGTFWPYTPSIQLL-YGLR  260 (401)
Q Consensus       204 ~-g~~g~G~l~~~~~-----~~~~~~~~~~~---~~~~~---------~~~~~----~~~~~g~~~~~~~~~~~~-~a~~  260 (401)
                      + ++-.+|+++.+++     ++..++.....   .-|..         +.+..    ......+ ..+.+.+.+. .++-
T Consensus       313 g~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~-~~g~s~p~Q~q~al~  391 (521)
T TIGR03801       313 GATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNH-TAGLSTPQQVQMALF  391 (521)
T ss_pred             cCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhc-cCCCCcHHHHHHHHH
Confidence            4 2344799998865     22222100000   00000         00000    0111111 1111222221 1211


Q ss_pred             HHHHHHHH--hcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC-C---------------CCHHHH
Q 015729          261 AALDLIFE--EGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS-H---------------INSSEI  322 (401)
Q Consensus       261 ~al~~~~~--~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~l  322 (401)
                      ++...+..  .-.+..++.++++.+.+.+.|   |+.+....+  ....++++.++. +               .+..++
T Consensus       392 a~~all~~~~~y~~~~~~~~~~R~~~l~~~L---g~~~~~~~~--~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~  466 (521)
T TIGR03801       392 SLFALMDKENAYKAETKDICRRREKLLFRGL---GLPLQEDPN--DVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDV  466 (521)
T ss_pred             HHHHHhccchhHHHHHHHHHHHHHHHHHHhc---CCCCcCCCC--CeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHH
Confidence            22222221  114455666777766666666   554322111  344677777752 1               146689


Q ss_pred             HHHHHhhCCeEEccCCCCC-CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          323 VRRAWQRYNLSLGLGLNKV-AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       323 ~~~L~~~~~i~v~~g~~~~-~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +.+|.++.||.+.||.... ..+++||++. ..+++++.++.++|++.+++.
T Consensus       467 ~~~L~~e~gV~v~PG~~Fg~~~~~vRisla-~l~~~~~~~~~~rl~~~~~~~  517 (521)
T TIGR03801       467 LFRLAEETGIVLLPGGGFGGPEWSVRVSLA-NLNEYDYAEIGRAIRKILDEY  517 (521)
T ss_pred             HHHHHHhCCEEEeCchhcCCCCCeEEEEec-CCCHHHHHHHHHHHHHHHHHH
Confidence            9999988899999995432 2457999774 378999999999999998764

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.94  E-value=1.6e-24  Score=204.05  Aligned_cols=309  Identities=13%  Similarity=0.026  Sum_probs=204.2

Q ss_pred             cccccCC-C-cCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHh----cCC--CCceEEecCChhHHHHHHHhcc-
Q 015729           10 NHLFVPG-P-VHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF----KTT--SGTPFLIPTTGTGAWESALTNT-   80 (401)
Q Consensus        10 ~~~~~~~-p-~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~--~~~~i~~~~g~t~a~~~~~~~~-   80 (401)
                      .+.++.| | .+.++.+.+++.+... ...+.......++++.+++++    |.+  +++++++|+|+++++..++..+ 
T Consensus        23 ~i~l~~~~p~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~  101 (357)
T TIGR03539        23 IVDLSVGTPVDPVPPLIRAALAAAAD-APGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLG  101 (357)
T ss_pred             eEEccCCCCCCCCCHHHHHHHHHHHh-hCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHc
Confidence            3444433 3 3445667777765322 222322333456666666665    432  3356999999999999887776 


Q ss_pred             CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hH
Q 015729           81 LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LS  157 (401)
Q Consensus        81 ~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~  157 (401)
                      +++||+|++++|+|+++.  ..++..|++++.++       +++.++    .   ++++++++++++||||.+++   ++
T Consensus       102 ~~~gd~Vl~~~p~y~~~~--~~~~~~g~~~~~v~-------~~~~l~----~---~~~~~v~~~~p~NPtG~~~~~~~~~  165 (357)
T TIGR03539       102 LGPGDTVVIPELAYPTYE--VGALLAGATPVAAD-------DPTELD----P---VGPDLIWLNSPGNPTGRVLSVDELR  165 (357)
T ss_pred             CCCCCEEEECCCCcHHHH--HHHHhcCCEEeccC-------ChhhcC----c---cCccEEEEeCCCCCcCccCCHHHHH
Confidence            799999999999887664  34567898887763       233222    1   35799999999999999997   55


Q ss_pred             HHHHHhhhcCCCcEEEEecccccCcc---e---eccC----cccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCC
Q 015729          158 KVRKLLDEYRHPALFLVDGVSSICAI---D---FRMD----EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAK  226 (401)
Q Consensus       158 ~i~~l~~~~~~~~~li~D~a~~~~~~---~---~~~~----~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~  226 (401)
                      +|.++|++  +|++||+|++|.....   +   ++..    .....+++.|.+|.++ .+..+|+++++++..+++....
T Consensus       166 ~i~~~a~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~~~~~~~~~~~~  243 (357)
T TIGR03539       166 AIVAWARE--RGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDPALVAELLTVR  243 (357)
T ss_pred             HHHHHHHH--cCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEecCHHHHHHHHHHH
Confidence            68888888  9999999999863211   1   1110    1123588899999873 2234699999888877664321


Q ss_pred             CCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCc
Q 015729          227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD  306 (401)
Q Consensus       227 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~  306 (401)
                      .             .  .   ...++.....++.++++.  ...+++.++.+.++++.+.+.|.+.|+.+..+    ..+
T Consensus       244 ~-------------~--~---~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~p----~~~  299 (357)
T TIGR03539       244 K-------------H--A---GLMVPAPVQAAMVAALGD--DGHVAEQKARYAARRAQLKPALEKAGFRIDHS----EAG  299 (357)
T ss_pred             h-------------h--c---ccCCCHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCC----Ccc
Confidence            0             0  0   112444333444444432  12356677888888899999998888766544    245


Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHH
Q 015729          307 TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGV  366 (401)
Q Consensus       307 ~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i  366 (401)
                      .++++.++.  +..++.+.|.++ ||.+.+|...  ...+++||++..  +++++++++++|
T Consensus       300 ~~~~~~~~~--~~~~~~~~l~~~-gV~v~pg~~f~~~~~~~iRis~~~--~~~~i~~~~~~l  356 (357)
T TIGR03539       300 LYLWATRGE--DAWDTVDRLAEL-GILVAPGDFYGPAGSQHVRVALTA--TDERIAAAVARL  356 (357)
T ss_pred             EEEEEECCC--CHHHHHHHHHhC-CEEECCccccCCCCCCeEEEEecC--CHHHHHHHHHhh
Confidence            677777643  567888888655 9999998532  224689998865  688999998876

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.94  E-value=3.2e-24  Score=203.70  Aligned_cols=313  Identities=16%  Similarity=0.130  Sum_probs=210.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCC-C
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-G  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~  118 (401)
                      .....++++.+++++|.+.   .++++|||+|+..++.++ +++||+|+++.++|++..  ..++..|++++.+++++ +
T Consensus        28 g~~~~~le~~la~~~g~~~---~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~--~~~~~~G~~~~~~~~~~~~  102 (380)
T TIGR03588        28 GPTVPAFEEALAEYVGAKY---AVAFNSATSALHIACLALGVGPGDRVWTTPITFVATA--NCALYCGAKVDFVDIDPDT  102 (380)
T ss_pred             ChhHHHHHHHHHHHHCCCe---EEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHH--HHHHHcCCEEEEEecCCCc
Confidence            3457899999999999864   456678999999999887 899999999999876653  55678899999999965 4


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccc----eE
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGI----DV  194 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~----di  194 (401)
                      +.+|++++++.+++...++++++++++   ++|...++++|.++|++  +|++||+|++|+.|.. ++....+.    |+
T Consensus       103 ~~~d~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~~~~~i~~l~~~--~~~~lI~D~a~a~g~~-~~~~~~g~~~~~d~  176 (380)
T TIGR03588       103 GNIDEDALEKKLAAAKGKLPKAIVPVD---FAGKSVDMQAIAALAKK--HGLKIIEDASHALGAE-YGGKPVGNCRYADA  176 (380)
T ss_pred             CCcCHHHHHHHhhcccCCCceEEEEeC---CCCccCCHHHHHHHHHH--cCCEEEEECCCcccCc-cCCEeCCCccccce
Confidence            578999999999732112568887654   58999999999999999  9999999999998865 44444455    99


Q ss_pred             EEecCC--CcccCCCcceEEE-ecHHHHHHhccCCCCccccchH------HHHHHhhcCCCCCCCCcHHHHHHHHHHHHH
Q 015729          195 ALTGSQ--KALSLPTGMGIVC-ASPKALEASKTAKSVRVFFDWK------DYIKFYNLGTFWPYTPSIQLLYGLRAALDL  265 (401)
Q Consensus       195 ~~~s~~--K~l~g~~g~G~l~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~a~~~al~~  265 (401)
                      .++|.|  |++.++.| |+++ .++++.+++......+...+..      .....++.+. ...+...   ..+.+++..
T Consensus       177 ~~~S~~~~K~~~~~~G-G~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~g~n~~m---~~l~aa~g~  251 (380)
T TIGR03588       177 TVFSFHPVKIITTAEG-GAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQE-LGFNYRM---TDIQAALGL  251 (380)
T ss_pred             EEEecCCCCcccccCc-eEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeec-cccccCc---cHHHHHHHH
Confidence            998876  98976665 5454 4566666554322111110000      0000111110 0001111   122333332


Q ss_pred             HHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCC-CccCCceeEEEEcC--CCCCHHHHHHHHHhhCCeEEccCCCCC
Q 015729          266 IFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQK-EEWFSDTVTAVIVP--SHINSSEIVRRAWQRYNLSLGLGLNKV  341 (401)
Q Consensus       266 ~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~l~~~L~~~~~i~v~~g~~~~  341 (401)
                      .+-..+++..++.+++.+++.+.|.++ ++.+.... .....+....+.++  .+.+.+++.+.|.++ ||.++..+.+.
T Consensus       252 ~qL~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~l~~~L~~~-gI~~~~~~~~~  330 (380)
T TIGR03588       252 SQLKKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEFGCTRKEVFEALRAA-GIGVQVHYIPV  330 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCcCCCCHHHHHHHHHHC-CCCcccCCccc
Confidence            222236788889999999999999887 45543321 11122334444453  345788999999765 98876543221


Q ss_pred             ----------C-----------CcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          342 ----------A-----------GKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       342 ----------~-----------~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                                .           .+.+++.++..+|++|+++++++|++++
T Consensus       331 ~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~  380 (380)
T TIGR03588       331 HLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL  380 (380)
T ss_pred             ccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence                      0           1458998888899999999999998764

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.94  E-value=3.4e-24  Score=204.99  Aligned_cols=298  Identities=13%  Similarity=0.085  Sum_probs=202.2

Q ss_pred             CccHHHHHHHHHHHHHHHhcCC-----CCceEE--ecCChhHHHHHHHh---ccCCCCCeEEEEcCCcchHHHHHHHHHc
Q 015729           37 SPAVPALTKTLLEDIKKIFKTT-----SGTPFL--IPTTGTGAWESALT---NTLSPGDRIISFLIGQFSLLWIDQQQRL  106 (401)
Q Consensus        37 ~~~~~~~~~~l~~~la~~~g~~-----~~~~i~--~~~g~t~a~~~~~~---~~~~~gd~vl~~~~~~~~~~~~~~~~~~  106 (401)
                      .|.......++|+.+++++...     .+++++  .|.|+++|+..++.   +++++||+|++++|+|+.+.  ..++..
T Consensus        67 ~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~--~~~~~~  144 (404)
T PTZ00376         67 EYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHV--NIFKSA  144 (404)
T ss_pred             CCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHH--HHHHHc
Confidence            3445566779999999987422     334576  48899999987764   67899999999999877654  578889


Q ss_pred             CCcEEEEeCC--CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccch---HHHHHHhhhcCCCcEEEEecccccC
Q 015729          107 NFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLLDEYRHPALFLVDGVSSIC  181 (401)
Q Consensus       107 g~~~~~v~~~--~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~li~D~a~~~~  181 (401)
                      |++++.+++.  .++.+|++.+++.+.+.+ ++.+++++++||||||.+++.   ++|.++|++  ++++||+|+++...
T Consensus       145 G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~-~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~--~~~~ii~De~Y~~~  221 (404)
T PTZ00376        145 GLNVKEYRYYDPKTKGLDFDGMLEDLRTAP-NGSVVLLHACAHNPTGVDPTEEQWKEIADVMKR--KNLIPFFDMAYQGF  221 (404)
T ss_pred             CCceeeccccCcccCCcCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh--CCcEEEEehhhcCc
Confidence            9999999983  246789999999986432 245778889999999999974   557778888  99999999998643


Q ss_pred             cce---------eccCcc-cceEEEecCCCccc-CCCcceEE---EecHHHHHHhccCCCCccccchHHHHHHhhcCCCC
Q 015729          182 AID---------FRMDEW-GIDVALTGSQKALS-LPTGMGIV---CASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFW  247 (401)
Q Consensus       182 ~~~---------~~~~~~-~~di~~~s~~K~l~-g~~g~G~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  247 (401)
                      ...         ...... ...+++.|.+|.++ .+.++|++   +.+++..+.+....            .... ... 
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~------------~~~~-~~~-  287 (404)
T PTZ00376        222 ASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQL------------KLII-RPM-  287 (404)
T ss_pred             cCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHH------------HHHH-hhh-
Confidence            221         011111 23588899999996 34557998   45666544332100            0000 000 


Q ss_pred             CCCCcHHHHHHHHHHHHHH--HH---hcHHHHHHHHHHHHHHHHHHHHHcCCc----cccCCCccCCceeEEEEcCCCCC
Q 015729          248 PYTPSIQLLYGLRAALDLI--FE---EGLENVIERHRRLGKATRLAVEAWGLK----NCTQKEEWFSDTVTAVIVPSHIN  318 (401)
Q Consensus       248 ~~~~~~~~~~a~~~al~~~--~~---~g~~~~~~~~~~~~~~l~~~L~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~  318 (401)
                      ..+++.....++..+++.-  .+   ..+++.+++++++++.+.+.|++.+..    +..+    ..+.++|+.++    
T Consensus       288 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p----~gg~f~~~~~~----  359 (404)
T PTZ00376        288 YSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHIIN----QIGMFSFTGLT----  359 (404)
T ss_pred             cCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccc----CceEEEecCCC----
Confidence            1123333333344444211  01   113455677888999999999887533    2222    34567766652    


Q ss_pred             HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          319 SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                       .+++++|.+++||.+.++      +  ||++.+ .+++++++++++|++++.
T Consensus       360 -~~~~~~L~~~~~v~v~p~------~--Ris~~~-~~~~~~~~~~~~l~~~~~  402 (404)
T PTZ00376        360 -KEQVERLIEKYHIYLLDN------G--RISVAG-LTSKNVDYVAEAIHDVVR  402 (404)
T ss_pred             -HHHHHHHHHhCCEeecCC------C--eEEEec-cCHHhHHHHHHHHHHHHh
Confidence             478888888889998766      2  998754 799999999999998874

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=5.8e-24  Score=198.06  Aligned_cols=297  Identities=14%  Similarity=0.085  Sum_probs=208.3

Q ss_pred             CCcCChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhcCC--CCceEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           16 GPVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTT--SGTPFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~--~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      .|.++++.+++++.+....  ...+. .....++++.++++++..  +++++++++|+++++..++.++    |+|++.+
T Consensus        29 ~~~~~p~~~~~~~~~~~~~~~~~~Y~-~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~----d~v~v~~  103 (335)
T PRK14808         29 NPFPFPEDLVDEVFRRLNSDTLRIYY-DSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF----DRSVFFP  103 (335)
T ss_pred             CCCCCCHHHHHHHHHHhhhhhhhcCC-CCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh----CcEEECC
Confidence            4777888888888764321  11111 124678999999999832  3445999999999999988776    6799998


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcE
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPAL  171 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~  171 (401)
                      |+|+.+.  ..++..|++++.++.+.++.++...    +.     +++++++++|+||||.+++.+++.+++ +  ++++
T Consensus       104 P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~----~~-----~~~~i~i~nP~NPTG~~~s~~~l~~l~-~--~~~~  169 (335)
T PRK14808        104 PTYSCYR--IFAKAVGAKFLEVPLTKDLRIPEVN----VG-----EGDVVFIPNPNNPTGHVFEREEIERIL-K--TGAF  169 (335)
T ss_pred             CCHHHHH--HHHHHcCCeEEEecCCCcCCCChhH----cc-----CCCEEEEeCCCCCCCCCcCHHHHHHHH-h--cCCE
Confidence            8766553  6788899999999988766544221    21     358999999999999999999999998 4  7899


Q ss_pred             EEEecccccCcc-e-ec-cCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCC
Q 015729          172 FLVDGVSSICAI-D-FR-MDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFW  247 (401)
Q Consensus       172 li~D~a~~~~~~-~-~~-~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  247 (401)
                      ||+|+++..... . .. .......+++.|.+|.++ .+.++|++++++++.+.+...+.                    
T Consensus       170 ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l~~~~~--------------------  229 (335)
T PRK14808        170 VALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVRL--------------------  229 (335)
T ss_pred             EEEECchhhhcCCchHHHHHhCCCEEEEEechhhccCcccceEEEEeCHHHHHHHHHhcC--------------------
Confidence            999999864321 0 11 112234688899999996 34457999999998887754321                    


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHH
Q 015729          248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAW  327 (401)
Q Consensus       248 ~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  327 (401)
                      .++.+.....++.++++..  ..+++..+++.+.++.+.+.|++.|+++..+     .+.++++.+|. .+..++.+.|.
T Consensus       230 ~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~-----~g~f~~~~l~~-~~~~~~~~~l~  301 (335)
T PRK14808        230 PFNVSYVSQMFAKVALDHR--EIFEERTKFIVEERERMKSALREMGYRITDS-----RGNFVFIFMEK-EEKERLLEHLR  301 (335)
T ss_pred             CCCCCHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHHHHCCCEECCC-----CCeEEEEeCCC-ccHHHHHHHHH
Confidence            1123333334445555421  1245556677777888889998888765543     23477888863 35678888887


Q ss_pred             hhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          328 QRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       328 ~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      ++ ||.|+..     ..++||++.   +.++.++++++|++
T Consensus       302 ~~-Gi~V~~~-----~~~~Risi~---~~~~~~~~~~~l~~  333 (335)
T PRK14808        302 AK-NIAVRSF-----REGVRITIG---KREENDMILKELEV  333 (335)
T ss_pred             HC-CeEEEEC-----CCCeEEecC---CHHHHHHHHHHHHh
Confidence            66 9999842     357999754   57888999988864

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.94  E-value=1.6e-23  Score=194.95  Aligned_cols=270  Identities=14%  Similarity=0.070  Sum_probs=192.0

Q ss_pred             HHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChH
Q 015729           45 KTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLD  124 (401)
Q Consensus        45 ~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~  124 (401)
                      .+|++.|+++++.+   ++++++|+++|+..++  .+.+||+|++++|+|+.+.  ..++..|++++.++.+        
T Consensus        52 ~~Lr~~ia~~~~~~---~I~it~Gs~~al~~~~--~~~~gd~v~v~~P~y~~~~--~~~~~~g~~~~~v~~~--------  116 (330)
T PRK05664         52 DGLEAAARAYYGAP---QLLPVAGSQAAIQALP--RLRAPGRVGVLSPCYAEHA--HAWRRAGHQVRELDEA--------  116 (330)
T ss_pred             HHHHHHHHHHhCCC---CEEECcCHHHHHHHHH--HccCCCEEEEcCCChHHHH--HHHHHcCCeEEEechh--------
Confidence            68999999999864   3999999999998875  3579999999999876553  6678899999988753        


Q ss_pred             HHHHHHhccCCCCceEEEEEecCCCcccccchHH---HHHHhhhcCCCcEEEEecccccCcc--e-eccCcccceEEEec
Q 015729          125 VLASKLAADTAHTIKAICIVHNETATGVTNNLSK---VRKLLDEYRHPALFLVDGVSSICAI--D-FRMDEWGIDVALTG  198 (401)
Q Consensus       125 ~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~---i~~l~~~~~~~~~li~D~a~~~~~~--~-~~~~~~~~di~~~s  198 (401)
                      ++++.++     +++++++++|+||||.+++.++   |.++|++  ++++||+|+++.....  + .........+++.|
T Consensus       117 ~~~~~~~-----~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~--~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~S  189 (330)
T PRK05664        117 EVEAALD-----SLDVLVVVNPNNPTGRRFDPARLLAWHARLAA--RGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRS  189 (330)
T ss_pred             hHhhhhc-----CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHh--cCCEEEEECCcccCCCcccccccccCCCEEEEee
Confidence            4555553     3578999999999999998655   5555677  8999999999864321  1 12222223588999


Q ss_pred             CCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHH
Q 015729          199 SQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIER  277 (401)
Q Consensus       199 ~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~  277 (401)
                      .+|.++ .+.++|++++++++.+.+.....                    .++.+.....++.++++..  ...++.+++
T Consensus       190 fSK~~gl~GlRiG~~v~~~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~L~~~--~~~~~~~~~  247 (330)
T PRK05664        190 FGKFFGLAGARLGFVLAEPALLRALAELLG--------------------PWTVSGPTRWLAQAALADT--PWQRRQRER  247 (330)
T ss_pred             ccccccCCCcceEEEEeCHHHHHHHHHhcC--------------------CCCCCHHHHHHHHHHHhCh--HHHHHHHHH
Confidence            999995 44557999999998877654211                    1123333334444444321  114567788


Q ss_pred             HHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHH
Q 015729          278 HRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEL  357 (401)
Q Consensus       278 ~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~  357 (401)
                      +.++++.+.+.|++.|++...     ....++++..+   +..++.+.|.++ ||.|+.. .  ..+++||++..  +++
T Consensus       248 ~~~~r~~l~~~L~~~~~~~~~-----~~~~f~~~~~~---~~~~~~~~l~~~-gi~v~~f-~--~~~~iRis~~~--~~~  313 (330)
T PRK05664        248 LLAASQRLAALLRRHGLTPAG-----GCALFQWVRTE---DAAALHEFLARR-GILTRLF-E--QPASLRFGLPA--DEA  313 (330)
T ss_pred             HHHHHHHHHHHHHHCCCcccC-----CcceEEEEecC---CHHHHHHHHHHC-CeEEEEC-C--CCCeEEEECCC--CHH
Confidence            888899999999987754221     12245666653   577888888766 9999743 2  35689998765  678


Q ss_pred             HHHHHHHHHHHHHHh
Q 015729          358 QLLGCLAGVEMILKD  372 (401)
Q Consensus       358 di~~~~~~i~~~l~~  372 (401)
                      +.++++++|+...++
T Consensus       314 ~~~~l~~al~~~~~~  328 (330)
T PRK05664        314 DWARLDQALLAYRKE  328 (330)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            899999999887665

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.94  E-value=9.5e-24  Score=196.82  Aligned_cols=274  Identities=14%  Similarity=0.064  Sum_probs=194.0

Q ss_pred             HHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChH
Q 015729           45 KTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLD  124 (401)
Q Consensus        45 ~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~  124 (401)
                      .+|++.+++++|.+.++++++++|+++++..+. .++++|+ |++..|+|+.+.  ..++..|++++.++.+.      +
T Consensus        56 ~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~-~~~~~g~-v~v~~P~y~~y~--~~~~~~g~~~~~v~~~~------~  125 (339)
T PRK06959         56 DGLAACAARYYGAPDAAHVLPVAGSQAAIRALP-ALLPRGR-VGIAPLAYSEYA--PAFARHGHRVVPLDEAA------D  125 (339)
T ss_pred             HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHH-HhcCCCe-EEEcCCCcHHHH--HHHHHCCCEEEeecccc------h
Confidence            699999999999976556999999999998664 4577876 888888766543  56778899998887543      2


Q ss_pred             HHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhh-cCCCcEEEEecccccCccee---ccCcccceEEEecCC
Q 015729          125 VLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE-YRHPALFLVDGVSSICAIDF---RMDEWGIDVALTGSQ  200 (401)
Q Consensus       125 ~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~-~~~~~~li~D~a~~~~~~~~---~~~~~~~di~~~s~~  200 (401)
                      .    +.    ..++.+++++|+||||.+++.+++.++++. ..+++++|+|+++.......   ...+....+++.|.+
T Consensus       126 ~----~~----~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfS  197 (339)
T PRK06959        126 T----LP----AALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVG  197 (339)
T ss_pred             h----cc----ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecCh
Confidence            2    22    234789999999999999998777666542 11789999999987543211   111122358889999


Q ss_pred             Cccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 015729          201 KALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHR  279 (401)
Q Consensus       201 K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~  279 (401)
                      |.++ .+..+|++++++++++.+.....                    +++.+.....++.++++.  ....++.++++.
T Consensus       198 K~~gl~GlRiGy~v~~~~li~~l~~~~~--------------------~~~vs~~~q~a~~~~L~~--~~~~~~~~~~~~  255 (339)
T PRK06959        198 KFFGLAGVRAGFVLAAPALLAALRDALG--------------------AWTVSGPARHAVRAAFAD--AAWQAAMRERLA  255 (339)
T ss_pred             hhcCCcchheEEEecCHHHHHHHHHhcC--------------------CCCCcHHHHHHHHHHhCc--HHHHHHHHHHHH
Confidence            9985 34457999999998887764321                    112334333444444431  112456778888


Q ss_pred             HHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHH
Q 015729          280 RLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQL  359 (401)
Q Consensus       280 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di  359 (401)
                      +.++++.+.|+++|+++..      .+.++++.++   +..++.+.|.++ ||.|+..   ...+++||++.+  +.+|.
T Consensus       256 ~~r~~l~~~L~~~g~~~~~------~~~f~~~~~~---~~~~l~~~l~~~-GI~vr~~---~~~~~lRisi~~--~~~e~  320 (339)
T PRK06959        256 ADGARLAALLRAHGFAVHA------TPLFSWTDDP---RAAALHAALARR-GIWTRYF---APPPSVRFGLPA--DEAEW  320 (339)
T ss_pred             HHHHHHHHHHHHCCCCccC------cceEEEEeCC---CHHHHHHHHHhC-CeEEEEC---CCCCeEEEECCC--CHHHH
Confidence            8999999999998876542      2356677764   567888989876 9999743   124589998655  77899


Q ss_pred             HHHHHHHHHHHHhc
Q 015729          360 LGCLAGVEMILKDV  373 (401)
Q Consensus       360 ~~~~~~i~~~l~~~  373 (401)
                      ++++++|+++++.+
T Consensus       321 ~~l~~al~~~~~~~  334 (339)
T PRK06959        321 QRLEDALAECVPTL  334 (339)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887754

>PLN02880 tyrosine decarboxylase

Probab=99.94  E-value=4.3e-24  Score=206.53  Aligned_cols=352  Identities=14%  Similarity=0.092  Sum_probs=234.3

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCC-----CCCccHHHHHHHHHHHHHHHhcCCCC------ceEEecCChhHHHHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNED-----YRSPAVPALTKTLLEDIKKIFKTTSG------TPFLIPTTGTGAWESAL   77 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~------~~i~~~~g~t~a~~~~~   77 (401)
                      +.+.+.+++...+..+-+.+....+.     ..++....+..++.+.+++++|.+..      ...++++|||+|+..++
T Consensus        84 ~f~~~~~~~~~~~~~lad~l~~~~n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al  163 (490)
T PLN02880         84 NYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVL  163 (490)
T ss_pred             CeeEeccCCCcHHHHHHHHHHHhhccCCcccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHH
Confidence            45666666665555555555553322     23455667788999999999998753      23688999999987765


Q ss_pred             hc----cCC-------CCCeEEEEcCCcchHHHHHHHHHcCC---cEEEEeCCC--CCCCChHHHHHHHhccC--CCCce
Q 015729           78 TN----TLS-------PGDRIISFLIGQFSLLWIDQQQRLNF---NVDVVESDW--GEGAKLDVLASKLAADT--AHTIK  139 (401)
Q Consensus        78 ~~----~~~-------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~le~~~~~~~--~~~~~  139 (401)
                      .+    .++       +.-.|++++..|+|.  .+.++..|+   +++.|+++.  ++++|+++|++++.++.  +..|.
T Consensus       164 ~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv--~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~  241 (490)
T PLN02880        164 LAARDRVLRKVGKNALEKLVVYASDQTHSAL--QKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPF  241 (490)
T ss_pred             HHHHHHHHHHhcccccCCeEEEEcCCchHHH--HHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccE
Confidence            32    111       112455566667765  477888888   478899875  45899999999997632  23577


Q ss_pred             EEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCccee-----ccCc-ccceEEEecCCCcccCCCcceEEE
Q 015729          140 AICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF-----RMDE-WGIDVALTGSQKALSLPTGMGIVC  213 (401)
Q Consensus       140 ~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~-----~~~~-~~~di~~~s~~K~l~g~~g~G~l~  213 (401)
                      +|+.+.+++.+|.+.|+++|.++|++  +|+|+|+|+||+.+.+..     .... .++|.++.++|||++.|.+||+++
T Consensus       242 ~vvataGTT~~GaiDpl~eI~~i~~~--~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~ll  319 (490)
T PLN02880        242 FLCATVGTTSSTAVDPLLELGKIAKS--NGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLW  319 (490)
T ss_pred             EEEEecCCCcCcccCcHHHHHHHHHH--cCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEE
Confidence            88888999999999999999999999  999999999998775432     1232 368999999999999999999999


Q ss_pred             ecHHHH--HHhccCCCCccccchHH-H-HHHhhcCCC-CCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 015729          214 ASPKAL--EASKTAKSVRVFFDWKD-Y-IKFYNLGTF-WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLA  288 (401)
Q Consensus       214 ~~~~~~--~~~~~~~~~~~~~~~~~-~-~~~~~~g~~-~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~  288 (401)
                      +++...  ..+..   ...|..... . ...+....+ ...+.. .....++.+++.+-.+|+.+..++..++++++.+.
T Consensus       320 vr~~~~l~~~~~~---~~~Yl~~~~~~~~~~~~~~~~~i~~~rr-~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~  395 (490)
T PLN02880        320 VKDRNALIQSLST---NPEFLKNKASQANSVVDYKDWQIPLGRR-FRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQL  395 (490)
T ss_pred             EeCHHHHHHHHcc---CHHHhcCccccccCCCChhccCcCCCCc-ccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            885331  21211   111100000 0 000000000 001111 12346666777776777888888888999999999


Q ss_pred             HHHc-CCccccCCCccCCceeEEEEcC-CCCCH-------HHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCC-HHH
Q 015729          289 VEAW-GLKNCTQKEEWFSDTVTAVIVP-SHINS-------SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLN-ELQ  358 (401)
Q Consensus       289 L~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~-~~d  358 (401)
                      |++. ++++..+.   .. .+++|+++ ...+.       .++.++|.+...+.+...... ...++|+++....| ++|
T Consensus       396 l~~~~~~el~~~~---~~-~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~-g~~~lR~~~~n~~tt~~d  470 (490)
T PLN02880        396 VAQDSRFEVVTPR---IF-SLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVLS-GKYVLRFAVGAPLTEERH  470 (490)
T ss_pred             HhcCCCEEEecCC---ce-EEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEEC-CEEEEEEEecCCCCCHHH
Confidence            9886 88887642   12 36677774 22221       245566665566776655332 23469999877555 699


Q ss_pred             HHHHHHHHHHHHHhc
Q 015729          359 LLGCLAGVEMILKDV  373 (401)
Q Consensus       359 i~~~~~~i~~~l~~~  373 (401)
                      ++.+++.|.+..+++
T Consensus       471 i~~~~~~i~~~~~~~  485 (490)
T PLN02880        471 VTAAWKVLQDEASKL  485 (490)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999887664

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.93  E-value=1e-23  Score=201.36  Aligned_cols=312  Identities=14%  Similarity=0.064  Sum_probs=205.2

Q ss_pred             HHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhcCC-----CCceE--EecCChhHHHHHHHhcc--CCCCCeEEEE
Q 015729           22 DQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTT-----SGTPF--LIPTTGTGAWESALTNT--LSPGDRIISF   90 (401)
Q Consensus        22 ~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~-----~~~~i--~~~~g~t~a~~~~~~~~--~~~gd~vl~~   90 (401)
                      +.+.+++.+....  ...|.......++|+.+++++...     .++++  ++|+|+++|+..++..+  +++||+|+++
T Consensus        47 ~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~  126 (396)
T PRK09257         47 RAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVS  126 (396)
T ss_pred             HHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEEC
Confidence            6777777664321  223444566778999998887432     23445  89999999999987554  5899999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeC-C-CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhh
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVES-D-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE  165 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~-~-~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~  165 (401)
                      +|+|+.+.  ..++..|++++.++. + .++.+|++++++.+++.. .+.++++++++|||||.+++   +++|.++|++
T Consensus       127 ~P~y~~~~--~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~-~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~  203 (396)
T PRK09257        127 DPTWPNHR--AIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAP-AGDVVLLHGCCHNPTGADLTPEQWDELAELLKE  203 (396)
T ss_pred             CCCcccHH--HHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Confidence            99877664  567889999999997 3 346789999999887422 23456677899999999997   4567888888


Q ss_pred             cCCCcEEEEecccccCccee--------ccCc-ccceEEEecCCCcccC-CCcceEEEe---cHHHHHHhccCCCCcccc
Q 015729          166 YRHPALFLVDGVSSICAIDF--------RMDE-WGIDVALTGSQKALSL-PTGMGIVCA---SPKALEASKTAKSVRVFF  232 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~~~~--------~~~~-~~~di~~~s~~K~l~g-~~g~G~l~~---~~~~~~~~~~~~~~~~~~  232 (401)
                        +|++||+|+++.......        .+.. ....+++.|.+|.++. +.++|++++   +++...++...       
T Consensus       204 --~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~-------  274 (396)
T PRK09257        204 --RGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQ-------  274 (396)
T ss_pred             --CCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccceeEEEEeCCHHHHHHHHHH-------
Confidence              999999999986432110        0111 1246888999999963 445799873   34433222110       


Q ss_pred             chHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHH--H---HhcHHHHHHHHHHHHHHHHHHHHHcC----CccccCCCcc
Q 015729          233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI--F---EEGLENVIERHRRLGKATRLAVEAWG----LKNCTQKEEW  303 (401)
Q Consensus       233 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~--~---~~g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~  303 (401)
                       +.   ......   .++++.....++...+..-  .   ...+++.+++++++++.+.+.|++.+    +.+..+    
T Consensus       275 -~~---~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~~~~~~~~~~p----  343 (396)
T PRK09257        275 -LK---ATIRTN---YSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPSRDFDFIAR----  343 (396)
T ss_pred             -HH---HHhhhh---cCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc----
Confidence             00   000001   1123333323333333211  0   12355678888999999999998864    333332    


Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          304 FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      ..+.++|+.++    . +++..|.++.||.+.+.      +  ||++.+ .+++++++++++|++++
T Consensus       344 ~gg~~~w~~l~----~-~~~~~l~~~~~V~~~p~------~--ri~~~~-~~~~~i~~~~~~i~~~~  396 (396)
T PRK09257        344 QRGMFSYSGLT----P-EQVDRLREEFGVYAVGS------G--RINVAG-LNESNIDYVAEAIAAVL  396 (396)
T ss_pred             cceEEEecCCC----H-HHHHHHHHcCCEEEcCC------C--eEEEee-CCHHHHHHHHHHHHhhC
Confidence            34567777663    2 44555666669988642      2  997754 89999999999998753

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.93  E-value=6.4e-24  Score=204.23  Aligned_cols=293  Identities=12%  Similarity=0.032  Sum_probs=192.4

Q ss_pred             HHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccCC-----CCCeEEE-EcCCcchHHHHHHHHHcC---
Q 015729           42 ALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLS-----PGDRIIS-FLIGQFSLLWIDQQQRLN---  107 (401)
Q Consensus        42 ~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~-----~gd~vl~-~~~~~~~~~~~~~~~~~g---  107 (401)
                      ....++|+.|++++    |.+ ++++|++|+|+++|+..++..+++     +||.|++ .+|+|+.+..  .+...+   
T Consensus        74 ~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~--~~~~~~~~~  151 (416)
T PRK09440         74 QGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYAD--AGLEEDLFV  151 (416)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHH--HhhccCcee
Confidence            34557777777776    432 345699999999999999888774     6899999 6888776542  222122   


Q ss_pred             -CcEEEEeCCC---CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEEEEeccccc
Q 015729          108 -FNVDVVESDW---GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSI  180 (401)
Q Consensus       108 -~~~~~v~~~~---~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~  180 (401)
                       .....++.+.   ++.+|+++++  +.    .+++++++++|+||||.+++   +++|.++|++  +|++||+|++|..
T Consensus       152 ~~~~~~~~~~~~~~~~~~d~~~l~--~~----~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~--~~~~iI~De~Y~~  223 (416)
T PRK09440        152 SYRPNIELLPEGQFKYHVDFEHLH--ID----EDTGAICVSRPTNPTGNVLTDEELEKLDALARQ--HNIPLLIDNAYGP  223 (416)
T ss_pred             ecccccccccccccccCCCHHHcc--cC----CCceEEEEecCCCCCCccCCHHHHHHHHHHHHH--cCCcEEEeCCccc
Confidence             2223333333   2468888887  33    46799999999999999998   5567888888  9999999999863


Q ss_pred             Cccee---ccC--cccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHH
Q 015729          181 CAIDF---RMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQL  255 (401)
Q Consensus       181 ~~~~~---~~~--~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  255 (401)
                      .....   +..  ..+..+++.|.+|+...+.++|+++.++++++.+.....                  .+..+++...
T Consensus       224 ~~~~~~~~~~~~~~~~~vI~~~SfSK~~~pGlRiG~~i~~~~l~~~~~~~~~------------------~~~~~~s~~~  285 (416)
T PRK09440        224 PFPGIIFSEATPLWNPNIILCMSLSKLGLPGVRCGIVIADEEIIEALSNMNG------------------IISLAPGRLG  285 (416)
T ss_pred             cCCCcchhhcCccccCCeEEEecccccCCCcceEEEEeCCHHHHHHHHHHHH------------------HhccCCCcHH
Confidence            21111   111  123468889999964334457999999988776653211                  0011234433


Q ss_pred             HHHHHHHHHHHHHhcH----HH-HHHHHHHHHHHHHHHHHHc--C--CccccCCCccCCceeEEEEcCC-CCCHHHHHHH
Q 015729          256 LYGLRAALDLIFEEGL----EN-VIERHRRLGKATRLAVEAW--G--LKNCTQKEEWFSDTVTAVIVPS-HINSSEIVRR  325 (401)
Q Consensus       256 ~~a~~~al~~~~~~g~----~~-~~~~~~~~~~~l~~~L~~~--g--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~  325 (401)
                      ..++.+++   ....+    .+ .++.++++.+.+.+.|.+.  +  +.+..+    ..+.++|+.+++ +.+..++.+.
T Consensus       286 q~~~~~~l---~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p----~gg~fiw~~~~~~~~~~~~~~~~  358 (416)
T PRK09440        286 PAIAAEMI---ESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKP----EGAIFLWLWFKDLPITTEELYQR  358 (416)
T ss_pred             HHHHHHHh---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecC----CCceEEEEECCCCCCCHHHHHHH
Confidence            33333333   22222    12 4555667777777777763  3  333232    245688888876 4677888888


Q ss_pred             HHhhCCeEEccCCCCCC---------CcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          326 AWQRYNLSLGLGLNKVA---------GKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       326 L~~~~~i~v~~g~~~~~---------~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      |.+ .||.+.+|.....         .+++||++..  +++++++++++|++++++
T Consensus       359 l~~-~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~--~~~~l~~~i~~l~~~~~~  411 (416)
T PRK09440        359 LKA-RGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQ--DDEEIEKGIAILAEEVEK  411 (416)
T ss_pred             HHH-CCEEEechHhhCCCCccccCCcCceEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence            865 4999999843211         2489998765  789999999999998865

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.93  E-value=3e-23  Score=196.63  Aligned_cols=333  Identities=13%  Similarity=0.073  Sum_probs=224.6

Q ss_pred             CCcccccCCC---cCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCC
Q 015729            8 GKNHLFVPGP---VHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG   84 (401)
Q Consensus         8 ~~~~~~~~~p---~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~g   84 (401)
                      +.+|.+...+   ..++++..+++......   |.....+.+|++.+++++|.+.   +++++||++|+.+++.++++||
T Consensus        19 ~~v~iDlltds~t~ams~~~~~a~~~gd~~---Y~~~~g~~~Leeaia~~~g~~~---vv~t~~Gt~Al~la~~al~~pG   92 (431)
T cd00617          19 EDVYIDLLTDSGTGAMSDYQWAAMMLGDEA---YAGSKSFYDLEDAVQDLFGFKH---IIPTHQGRGAENILFSILLKPG   92 (431)
T ss_pred             CCcCCCCCCCCCcHHHHHHHHHHHHhCCCc---cCCCCCHHHHHHHHHHHHCCCe---EEEcCCHHHHHHHHHHHhCCCC
Confidence            4453333333   46677778887754432   3334556799999999999875   8999999999999999999999


Q ss_pred             CeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC----------CCCChHHHHHHHhccCCCCceEEEEEecCCCc-ccc
Q 015729           85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG----------EGAKLDVLASKLAADTAHTIKAICIVHNETAT-GVT  153 (401)
Q Consensus        85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~----------~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~t-G~~  153 (401)
                      |.| ++++ |+... .......|++++.+++++.          +.+|++.+++.+++.+..++++|+++.++|++ |..
T Consensus        93 D~V-~~~~-~f~~~-~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~  169 (431)
T cd00617          93 RTV-PSNM-HFDTT-RGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQP  169 (431)
T ss_pred             CEE-ccCC-cccch-HHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCcc
Confidence            977 4554 44333 2456778999999998632          45899999999986432458899999999998 888


Q ss_pred             cch---HHHHHHhhhcCCCcEEEEecccccCccee-----------ccCc------ccceEEEecCCCcccCCCcceEEE
Q 015729          154 NNL---SKVRKLLDEYRHPALFLVDGVSSICAIDF-----------RMDE------WGIDVALTGSQKALSLPTGMGIVC  213 (401)
Q Consensus       154 ~~l---~~i~~l~~~~~~~~~li~D~a~~~~~~~~-----------~~~~------~~~di~~~s~~K~l~g~~g~G~l~  213 (401)
                      .++   ++|.++|++  +|++||.|+++..+...+           .+.+      -..|.+.+|++|.+.++.| |+++
T Consensus       170 ~s~~~l~~i~eia~~--~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~G-G~i~  246 (431)
T cd00617         170 VSMANLREVRELAHK--YGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIG-GFLA  246 (431)
T ss_pred             CCHHHHHHHHHHHHH--cCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccc-eEEE
Confidence            864   567999999  999999999976532111           1111      1368899999998766655 7999


Q ss_pred             ecH-HHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc
Q 015729          214 ASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW  292 (401)
Q Consensus       214 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~  292 (401)
                      .++ ++++++......            + .+....+..+...+.++..+++...+  .+ ..++..+.++++.+.|++.
T Consensus       247 ~~d~~l~~~~~~~~~~------------~-~~~~~~gG~~~r~~~A~A~gL~e~~~--~~-~l~~~~~~r~~l~~~L~~~  310 (431)
T cd00617         247 LRDDELYEEARQRVVL------------Y-EGFVTYGGMAGRDMEALAQGLREAVE--ED-YLRHRVEQVRYLGDRLDEA  310 (431)
T ss_pred             eCcHHHHHHHHHhccc------------c-CCccccccccHHHHHHHHHHHHhccc--HH-HHHHHHHHHHHHHHHHHHC
Confidence            987 577776532110            0 01101112333333444334432111  23 3344444558999999999


Q ss_pred             CCccccCCCccCCceeEEEEcCC--------CCCHHHHHHHHHhhCCeEEcc-C-----CCCCCC-------cEEEEeec
Q 015729          293 GLKNCTQKEEWFSDTVTAVIVPS--------HINSSEIVRRAWQRYNLSLGL-G-----LNKVAG-------KVFRIGHL  351 (401)
Q Consensus       293 g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~L~~~~~i~v~~-g-----~~~~~~-------~~~Ri~~~  351 (401)
                      |+++..+.    .+..+++.++.        ..++.+++.+|.++.||.+.. |     .++..+       ..+|+++.
T Consensus       311 G~~v~~P~----Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~p  386 (431)
T cd00617         311 GVPIVEPA----GGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIP  386 (431)
T ss_pred             CCCccCCC----cceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEecc
Confidence            99887653    33566666531        235789998888887888542 3     222222       45999865


Q ss_pred             c-cCCHHHHHHHHHHHHHHHHh
Q 015729          352 G-HLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       352 ~-~~~~~di~~~~~~i~~~l~~  372 (401)
                      - ..|.+++|.+.++|.++++.
T Consensus       387 rr~~t~~~~~~~~~~~~~~~~~  408 (431)
T cd00617         387 RRVYTQDHMDYVAAAVIALYER  408 (431)
T ss_pred             ccccCHHHHHHHHHHHHHHHhh
Confidence            4 56899999999999998864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PLN02590 probable tyrosine decarboxylase

Probab=99.93  E-value=2.4e-23  Score=201.31  Aligned_cols=353  Identities=14%  Similarity=0.080  Sum_probs=239.7

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCC-----CCCccHHHHHHHHHHHHHHHhcCCCC------ceEEecCChhHHHHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNED-----YRSPAVPALTKTLLEDIKKIFKTTSG------TPFLIPTTGTGAWESAL   77 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~------~~i~~~~g~t~a~~~~~   77 (401)
                      +.+.+.+++...+..+-|.+......     ..++....+..++.+.+++++|.+..      ..-++++|||+|+..++
T Consensus       132 ~f~a~~~~~~~~~~~lgd~l~sa~n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al  211 (539)
T PLN02590        132 SYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVV  211 (539)
T ss_pred             CeeEeccCCCcHHHHHHHHHHHhcccccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHH
Confidence            45666777666666666666664432     23566677888999999999998753      33688999999987766


Q ss_pred             hc----cCC-------CCCeEEEEcCCcchHHHHHHHHHcCC---cEEEEeCCC--CCCCChHHHHHHHhccC--CCCce
Q 015729           78 TN----TLS-------PGDRIISFLIGQFSLLWIDQQQRLNF---NVDVVESDW--GEGAKLDVLASKLAADT--AHTIK  139 (401)
Q Consensus        78 ~~----~~~-------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~le~~~~~~~--~~~~~  139 (401)
                      .+    .++       +.-.|++++..|+|.  .+.++..|+   +++.|+++.  ++++|+++|++++.++.  +..|.
T Consensus       212 ~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv--~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~  289 (539)
T PLN02590        212 LAARDRILKKVGKTLLPQLVVYGSDQTHSSF--RKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPF  289 (539)
T ss_pred             HHHHHHHHhhhcccCCCCEEEEecCCchHHH--HHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcE
Confidence            33    111       111344555566665  477888887   689999884  46899999999997643  23577


Q ss_pred             EEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceecc------CcccceEEEecCCCcccCCCcceEEE
Q 015729          140 AICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRM------DEWGIDVALTGSQKALSLPTGMGIVC  213 (401)
Q Consensus       140 ~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~------~~~~~di~~~s~~K~l~g~~g~G~l~  213 (401)
                      +|+.+...+.+|.+.|+++|.++|++  +|+|+|+|+|++.......-      .-..+|.++.++|||+..|.+||+++
T Consensus       290 ~VvaTaGTT~tGaiDpl~~Ia~i~~~--~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~ll  367 (539)
T PLN02590        290 FICATVGTTSSAAVDPLVPLGNIAKK--YGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLW  367 (539)
T ss_pred             EEEEEeCCCCCcccCCHHHHHHHHHH--hCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEE
Confidence            88889999999999999999999999  99999999999866533211      11357999999999999999999999


Q ss_pred             ecHHH--HHHhccCCCCccccchHH--HHHHhhcCC-CCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 015729          214 ASPKA--LEASKTAKSVRVFFDWKD--YIKFYNLGT-FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLA  288 (401)
Q Consensus       214 ~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~g~-~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~  288 (401)
                      ++++.  ...+.. ..  .|.....  ....+..+. ....+.. .....++.+++.+-.+|+++..++..++++++.+.
T Consensus       368 vr~~~~l~~a~~~-~~--~YL~~~~~~~~~~~d~~d~~i~lsRr-~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~  443 (539)
T PLN02590        368 VKDRYSLIDALKT-NP--EYLEFKVSKKDTVVNYKDWQISLSRR-FRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDY  443 (539)
T ss_pred             ecCHHHHHHHhhc-CH--HHhCCcccccccCCCccccCCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88753  122211 11  1110000  000000000 0111222 45678899999999999999999999999999999


Q ss_pred             HHHc-CCccccCCCccCCceeEEEEc-CCCCC---HH----HHHHHHHhhCCeEEccCCCCCCCcEEEEeecc-cCCHHH
Q 015729          289 VEAW-GLKNCTQKEEWFSDTVTAVIV-PSHIN---SS----EIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNELQ  358 (401)
Q Consensus       289 L~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~~---~~----~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~-~~~~~d  358 (401)
                      |++. +++++.+.   .. .+++|+. |.+.+   ..    ++.++|.+...+++.+.... ...++|+++.+ .++++|
T Consensus       444 l~~~~~fel~~~~---~l-~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~-g~~~lR~~i~n~~T~~~d  518 (539)
T PLN02590        444 VAQDPSFEVVTTR---YF-SLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTALS-GKFVLRFAVGAPLTEEKH  518 (539)
T ss_pred             HhcCCCeEEecCC---ce-EEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEEC-CEEEEEEEecCCCCCHHH
Confidence            9987 88887642   22 4666775 22222   12    45555554444555544322 12359998766 556899


Q ss_pred             HHHHHHHHHHHHHhcC
Q 015729          359 LLGCLAGVEMILKDVG  374 (401)
Q Consensus       359 i~~~~~~i~~~l~~~~  374 (401)
                      ++.+++.|.+...+++
T Consensus       519 v~~~~~~i~~~a~~~~  534 (539)
T PLN02590        519 VTEAWQIIQKHASKFT  534 (539)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999877664

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.93  E-value=2.1e-23  Score=191.00  Aligned_cols=329  Identities=16%  Similarity=0.168  Sum_probs=230.5

Q ss_pred             ChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCCCeEEEEcCCcchHH
Q 015729           20 IPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSLL   98 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~~   98 (401)
                      +.+.-++++.+...+.+-.. +....++++.+++++|.+.   ++.++|||.|+.+++.++ ++|||+|+++...+....
T Consensus        13 i~~~e~~~v~~vl~sg~i~~-G~~v~~FE~~~ae~~G~k~---ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATa   88 (374)
T COG0399          13 IGEEELAAVQEVLKSGWLTG-GPFVRRFEQAFAEYLGVKY---AVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATA   88 (374)
T ss_pred             cchHHHHHHHHHHHcCCeec-ChHHHHHHHHHHHHhCCCe---EEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHH
Confidence            55555666665443332222 5778899999999999988   788999999999999853 799999999988666553


Q ss_pred             HHHHHHHcCCcEEEEeCCCC-CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecc
Q 015729           99 WIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGV  177 (401)
Q Consensus        99 ~~~~~~~~g~~~~~v~~~~~-~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a  177 (401)
                        ......|+++++|+++++ +++|++.+|+++.+    ++|+|+.+|.   .|...++++|.++|++  ||++||+|+|
T Consensus        89 --n~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~----~tKAIipVhl---~G~~~dm~~i~~la~~--~~l~vIEDaA  157 (374)
T COG0399          89 --NAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITP----RTKAIIPVHL---AGQPCDMDAIMALAKR--HGLPVIEDAA  157 (374)
T ss_pred             --HHHHHcCCeEEEEecCCcccCCCHHHHHHHccc----CCeEEEEehh---ccCCCCHHHHHHHHHH--cCCeEEEEcc
Confidence              456668999999999976 68999999999984    6799999974   7899999999999999  9999999999


Q ss_pred             cccCcceeccCc--cc-ceEEEecCCCcccCCCcceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcH
Q 015729          178 SSICAIDFRMDE--WG-IDVALTGSQKALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSI  253 (401)
Q Consensus       178 ~~~~~~~~~~~~--~~-~di~~~s~~K~l~g~~g~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  253 (401)
                      |+.|+..-+-.-  .| +-++.|-++|.+.++.| |.++.+ +++.++++..+..+...+-.........|    .+.. 
T Consensus       158 qa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittgEG-Gav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G----~N~r-  231 (374)
T COG0399         158 QAHGATYKGKKVGSFGDIGAFSFHATKNLTTGEG-GAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELG----YNYR-  231 (374)
T ss_pred             hhccCeecCcccccccceEEEEecCCCCccccCc-eEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecc----cccC-
Confidence            999986543221  12 44566668899977766 666655 45566555433211100000000001112    1222 


Q ss_pred             HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc-cCCceeEEEEcCCC-CCHHHHHHHHHhhC
Q 015729          254 QLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE-WFSDTVTAVIVPSH-INSSEIVRRAWQRY  330 (401)
Q Consensus       254 ~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~l~~~L~~~~  330 (401)
                        +..+.+|+.+.+-+.+++..++.+++.+.+.+.|.++ ++.+...... ...+.+..+.+++. .+.+.+.+.|.++ 
T Consensus       232 --m~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~~~R~~l~~~L~~~-  308 (374)
T COG0399         232 --LTEIQAAIGLAQLERLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEEGISRDALMESLKEA-  308 (374)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCCCCCHHHHHHHHHhC-
Confidence              2456777777666667889999999999999999987 5554433222 24456666667553 6778899999866 


Q ss_pred             CeE----EccCCC------C--C-----------CCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          331 NLS----LGLGLN------K--V-----------AGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       331 ~i~----v~~g~~------~--~-----------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      ||.    ..|-+.      .  .           ..+.+++-.+..++++|+++++++|++++..
T Consensus       309 gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~  373 (374)
T COG0399         309 GVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLGS  373 (374)
T ss_pred             CCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence            544    333111      0  0           1244889888899999999999999998753

>PLN02271 serine hydroxymethyltransferase

Probab=99.93  E-value=4.3e-23  Score=195.47  Aligned_cols=350  Identities=13%  Similarity=0.048  Sum_probs=241.6

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCC--------Cc---c-HHHHHHHHHHHHHHHhcCCCCce-E-EecCChhHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYR--------SP---A-VPALTKTLLEDIKKIFKTTSGTP-F-LIPTTGTGAWE   74 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~--------~~---~-~~~~~~~l~~~la~~~g~~~~~~-i-~~~~g~t~a~~   74 (401)
                      +...++|+=-.++++|++++.....+.+        .+   . ..++..-+.++..++||.+..++ + +-.-+|+.|+.
T Consensus       149 ~~l~LIASEN~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~  228 (586)
T PLN02271        149 KGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANF  228 (586)
T ss_pred             cCeeeccccccCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHH
Confidence            4567778878889999999988443321        11   1 23344456788888999775322 1 33458999999


Q ss_pred             HHHhccCCCCCeEEEEcCCcchHHH-H------HHHHHcCCcEEEEe--CC-CCCCCChHHHHHHHhccCCCCceEEEEE
Q 015729           75 SALTNTLSPGDRIISFLIGQFSLLW-I------DQQQRLNFNVDVVE--SD-WGEGAKLDVLASKLAADTAHTIKAICIV  144 (401)
Q Consensus        75 ~~~~~~~~~gd~vl~~~~~~~~~~~-~------~~~~~~g~~~~~v~--~~-~~~~~d~~~le~~~~~~~~~~~~~i~~~  144 (401)
                      +++.++++|||+|+..+..|.++.. .      ..+...|..+..++  ++ .++.+|.+++++.+..   .+||+|++.
T Consensus       229 aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~---~rPKLII~g  305 (586)
T PLN02271        229 AVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALD---FRPKILICG  305 (586)
T ss_pred             HHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhh---cCCeEEEEC
Confidence            9999999999999998875555431 1      22344566566665  43 3567999999996544   578999998


Q ss_pred             ecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccC---cccceEEEecCCCcccCCCcceEEEecHHHHHH
Q 015729          145 HNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD---EWGIDVALTGSQKALSLPTGMGIVCASPKALEA  221 (401)
Q Consensus       145 ~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~---~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~  221 (401)
                      +..++  ...|++++.++|++  +|+++++|.+|..|.+..+..   -.++|+++++.||||.||.| |+++++++....
T Consensus       306 ~Sayp--r~~D~~~i~eIAde--vGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~~~~  380 (586)
T PLN02271        306 GSSYP--REWDYARFRQIADK--CGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRG-GIIFYRKGPKLR  380 (586)
T ss_pred             chhcc--CcCCHHHHHHHHHH--cCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCCCc-eEEEeccccccc
Confidence            87777  67899999999999  999999999999987754421   12589999999999999998 888887764322


Q ss_pred             hccCCCCccccc--hHHHHHHhhcC--CCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccc
Q 015729          222 SKTAKSVRVFFD--WKDYIKFYNLG--TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNC  297 (401)
Q Consensus       222 ~~~~~~~~~~~~--~~~~~~~~~~g--~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~  297 (401)
                      ..+... ++..+  ..+..+.+...  +.+-+++....++++..+++......++...++..+|++.|.+.|.+.|+++.
T Consensus       381 ~~g~~g-s~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~G~~vv  459 (586)
T PLN02271        381 KQGMLL-SHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRRKCRLV  459 (586)
T ss_pred             ccCCcc-ccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHCCCeEe
Confidence            221110 00000  00111111111  01122344555888888888877666788999999999999999999999998


Q ss_pred             cCCCccCCceeEEEEcC-CCCCHHHHHHHHHhhCCeEEccCCC-----CCCCcEEEEeecccC----CHHHHHHHHHHHH
Q 015729          298 TQKEEWFSDTVTAVIVP-SHINSSEIVRRAWQRYNLSLGLGLN-----KVAGKVFRIGHLGHL----NELQLLGCLAGVE  367 (401)
Q Consensus       298 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~~i~v~~g~~-----~~~~~~~Ri~~~~~~----~~~di~~~~~~i~  367 (401)
                      ...   ..+.++.+.+. .+++...+.+.| +..||.+....-     +.....+||+...-+    .++|++++.+.|.
T Consensus       460 ~gg---TdnHlvLvDl~~~g~~G~~ae~~L-e~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~  535 (586)
T PLN02271        460 TGG---TDNHLLLWDLTTLGLTGKNYEKVC-EMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLL  535 (586)
T ss_pred             eCC---CCcceeeecCcccCCCHHHHHHHH-HHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHH
Confidence            732   34456667762 355677777766 456998864422     122345999976633    4789999999998


Q ss_pred             HHHH
Q 015729          368 MILK  371 (401)
Q Consensus       368 ~~l~  371 (401)
                      ++++
T Consensus       536 ~~~~  539 (586)
T PLN02271        536 RAAQ  539 (586)
T ss_pred             HHHh
Confidence            8876

>PLN02263 serine decarboxylase

Probab=99.93  E-value=7.7e-23  Score=192.82  Aligned_cols=298  Identities=13%  Similarity=0.090  Sum_probs=223.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCC-CceEEecCChhHHHHHHHhcc--CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCC
Q 015729           40 VPALTKTLLEDIKKIFKTTS-GTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD  116 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~-~~~i~~~~g~t~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~  116 (401)
                      ..+...++.+.+++++|.++ ..+-++|+|||+++..++.+-  ..+...+++++..|+|..  +.++..|++++.|+.+
T Consensus       131 s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~--KAa~llgi~~~~Vp~d  208 (470)
T PLN02263        131 SRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF--KAARMYRMECVKVDTL  208 (470)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHH--HHHHhcCCcceEeccC
Confidence            45677789999999999875 345789999999998877442  223346777778787764  7889999999999999


Q ss_pred             CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCc-----EEEEecccccCccee------
Q 015729          117 WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPA-----LFLVDGVSSICAIDF------  185 (401)
Q Consensus       117 ~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~-----~li~D~a~~~~~~~~------  185 (401)
                      .++++|+++|++++.+++ .+|.+|+.+.+++++|.+.|+++|.++|++  +|+     |+++|+|++...+++      
T Consensus       209 ~~g~mD~~aL~~aI~~d~-~~P~iVvataGTT~~GAiDpi~eIa~i~~~--~g~~~~~iwlHVDAA~GG~~lPf~~~~~~  285 (470)
T PLN02263        209 VSGEIDCADFKAKLLANK-DKPAIINVNIGTTVKGAVDDLDLVIKTLEE--CGFSQDRFYIHCDGALFGLMMPFVKRAPK  285 (470)
T ss_pred             CCCcCcHHHHHHHHHhCC-CCcEEEEEEecCCCCcCCCCHHHHHHHHHH--cCCccCCeeEEEeccchhhHhhhcccccc
Confidence            999999999999998765 467788889999999999999999999999  775     999999987655432      


Q ss_pred             -ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHH
Q 015729          186 -RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALD  264 (401)
Q Consensus       186 -~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~  264 (401)
                       ++.. .+|.++.++|||++.|.++|+++++++..+.+...   ..|....        .....++.+....+.++.++.
T Consensus       286 ~df~~-~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~---~~Yl~~~--------d~ti~gSR~g~~al~lW~~L~  353 (470)
T PLN02263        286 VTFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN---VEYLASR--------DATIMGSRNGHAPIFLWYTLN  353 (470)
T ss_pred             cCCCc-CccEEEECCccccCCCcCEEEEEEehhhHhhhccC---hHhhCCC--------CCCcCCCCCcHHHHHHHHHHH
Confidence             3332 48999999999999999999999998765433221   1111110        011233444445678899999


Q ss_pred             HHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCc
Q 015729          265 LIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGK  344 (401)
Q Consensus       265 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~  344 (401)
                      .+..+|+.+..++..++++++.+.|++.|+......   .+. .+.|..|.   ...    . .+ |..+..     .++
T Consensus       354 ~~G~~G~~~~i~~~~~~A~~l~~~l~~~g~~~~~~p---~s~-~V~f~~p~---~~~----~-~~-gW~L~~-----~~~  415 (470)
T PLN02263        354 RKGYRGFQKEVQKCLRNAHYLKDRLREAGISAMLNE---LSS-TVVFERPK---DEE----F-VR-RWQLAC-----QGN  415 (470)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCC---Cce-EEEEecCc---hHH----h-hc-ceEEcc-----CCC
Confidence            888889999999999999999999999988776532   233 44454431   111    1 12 444432     245


Q ss_pred             EEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          345 VFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       345 ~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .+++.+...++++.+|++++.|++..+.
T Consensus       416 ~~Hivvmphv~~~~id~fi~DL~~~~~~  443 (470)
T PLN02263        416 IAHVVVMPSVTIEKLDYFLKELVEKRST  443 (470)
T ss_pred             cEEEEEcCCCCHHHHHHHHHHHHHHHhh
Confidence            6899888878999999999999988763

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.93  E-value=3e-23  Score=195.37  Aligned_cols=327  Identities=12%  Similarity=0.116  Sum_probs=212.3

Q ss_pred             ChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCCCeEEEEcCCcchHH
Q 015729           20 IPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSLL   98 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~~   98 (401)
                      +.++.++++.+...............++++.+++++|.+.   +++++|+|+|+..++.++ ++|||+|+++.++|++..
T Consensus         9 ~~~~e~~a~~~~~~~~~~~~~g~~~~~~e~~la~~~g~~~---~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~   85 (376)
T TIGR02379         9 VTGQELEYIAEAISEGKLSGDGPFSRRCETWLENRTGTKK---ALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTA   85 (376)
T ss_pred             CCHHHHHHHHHHHHcCCccCCcHHHHHHHHHHHHHhCCCe---EEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHH
Confidence            4455566666543322222234667899999999988754   899999999999888776 899999999999877654


Q ss_pred             HHHHHHHcCCcEEEEeCCCC-CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecc
Q 015729           99 WIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGV  177 (401)
Q Consensus        99 ~~~~~~~~g~~~~~v~~~~~-~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a  177 (401)
                        ......|++++.++++.+ ..+|++++++++++    ++++|+.   .+++|...|+++|.++|++  +|++||+|++
T Consensus        86 --~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~----~tk~Iip---~~~~G~~~d~~~I~~la~~--~~i~vIeDaa  154 (376)
T TIGR02379        86 --NAFVLRGAKIVFVDIRPDTMNIDETLIESAITH----RTKAIVP---VHYAGVACDMDTIMALANK--HQLFVIEDAA  154 (376)
T ss_pred             --HHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc----CceEEEE---eCCCCCccCHHHHHHHHHH--CCCEEEEECc
Confidence              445678999999999876 47899999998874    5688864   4578999999999999999  9999999999


Q ss_pred             cccCcceeccCcccc--eEEEec--CCCcccCC-CcceEEEec-HHHHHHhccCCCCcccc-c-hHHHHHH---hhcCCC
Q 015729          178 SSICAIDFRMDEWGI--DVALTG--SQKALSLP-TGMGIVCAS-PKALEASKTAKSVRVFF-D-WKDYIKF---YNLGTF  246 (401)
Q Consensus       178 ~~~~~~~~~~~~~~~--di~~~s--~~K~l~g~-~g~G~l~~~-~~~~~~~~~~~~~~~~~-~-~~~~~~~---~~~g~~  246 (401)
                      |+.|.. ++....+.  |+.++|  ..|.+..+ .| |+++.+ +++.+++...+..+... + .......   ...|. 
T Consensus       155 ~~~g~~-~~~~~~g~~~~~~~fSf~~~K~l~~g~~g-G~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~-  231 (376)
T TIGR02379       155 QGVMST-YKGRALGSIGHLGTFSFHETKNYTSGGEG-GALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGS-  231 (376)
T ss_pred             cccCCc-cCCcccCCCCCEEEEeCCCCCcCcccCCc-eEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecc-
Confidence            998764 23222332  555555  44666544 44 666554 77777666433211000 0 0000000   00121 


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc---C-Ccccc-CCCccCCceeEEEEcCCCCCHHH
Q 015729          247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW---G-LKNCT-QKEEWFSDTVTAVIVPSHINSSE  321 (401)
Q Consensus       247 ~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~---g-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  321 (401)
                       .+-.+..     .+++...+-..+++..++.+++++.+.+.|..+   + ..+.. ++.....+..+.+.++.+.+.++
T Consensus       232 -n~~~~~~-----~Aa~g~~qL~~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~r~~  305 (376)
T TIGR02379       232 -SYLPSEL-----QAAYLWAQLEQADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLKDEDDRNE  305 (376)
T ss_pred             -cCCccHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEECCcCCHHH
Confidence             1112222     233332222235667777778888888888664   2 22221 11112233455667755456889


Q ss_pred             HHHHHHhhCCeEEccCCCCC------------C----------CcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          322 IVRRAWQRYNLSLGLGLNKV------------A----------GKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       322 l~~~L~~~~~i~v~~g~~~~------------~----------~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      +.+.|.++ ||.++.++.+.            .          ...+.+.++..++++|++++++.|++++
T Consensus       306 l~~~L~~~-gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~  375 (376)
T TIGR02379       306 LIKYLKEQ-EIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDYL  375 (376)
T ss_pred             HHHHHHHC-CCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence            99999876 98876443210            0          2348888888999999999999998764

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.93  E-value=4.6e-23  Score=173.91  Aligned_cols=338  Identities=15%  Similarity=0.152  Sum_probs=242.7

Q ss_pred             CcccccC--CCcCChHHHHHHHccCcCCCC--Cc---c-----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHH
Q 015729            9 KNHLFVP--GPVHIPDQVIRAMNRNNEDYR--SP---A-----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA   76 (401)
Q Consensus         9 ~~~~~~~--~p~~~~~~v~~a~~~~~~~~~--~~---~-----~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~   76 (401)
                      +..+..|  -...++++..+++-+++..+.  ..   +     ....+..+.+.+++++|.+.   +-+|.|+-+|=.++
T Consensus        16 ~~iNv~PiQrGGiLt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFlg~D~---~R~t~GARe~Kfav   92 (382)
T COG1103          16 GFINVNPIQRGGILTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFLGMDE---VRVTAGAREAKFAV   92 (382)
T ss_pred             CccccChhhccCcCCHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHhCCce---eeecccchhhHHHH
Confidence            3444444  245678889999998765431  00   0     11236677888999999987   78999999999999


Q ss_pred             HhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCC--CCCCCChHHHHHHHhc---cCCCCceEEEEEecCCCcc
Q 015729           77 LTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAA---DTAHTIKAICIVHNETATG  151 (401)
Q Consensus        77 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~le~~~~~---~~~~~~~~i~~~~~~n~tG  151 (401)
                      |.++.++||-|++..+.|++.+  -.+++.|+++..||..  ++..++++...+.+++   ..++.+.+.+++|+....|
T Consensus        93 Mhal~~~gd~vV~D~~aHYtty--vAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YG  170 (382)
T COG1103          93 MHALCKEGDWVVVDSLAHYTTY--VAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYG  170 (382)
T ss_pred             HHHhccCCCEEEEcCcchHHHH--HHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcC
Confidence            9999999999999999999876  4589999999999953  2346788888777765   2223478889999999999


Q ss_pred             cccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccc
Q 015729          152 VTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF  231 (401)
Q Consensus       152 ~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~  231 (401)
                      .+.|.+.++++|++  +|++++..+|+..|.++.+....++|+++.|+||.+....++|++.++.++.+.........  
T Consensus       171 Nl~Dakkva~ic~e--~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~Sg~~--  246 (382)
T COG1103         171 NLADAKKVAKICRE--YGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRSGRA--  246 (382)
T ss_pred             CchhhHHHHHHHHH--cCCceEeecceeeccccccccccCCCEEEecCccchhccCCeeEEeehhHHHHHHHhhcccc--
Confidence            99999999999999  99999999999999999999999999999999999988888999999999877654322110  


Q ss_pred             cchHHHHHHhh-cCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeE
Q 015729          232 FDWKDYIKFYN-LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVT  309 (401)
Q Consensus       232 ~~~~~~~~~~~-~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~  309 (401)
                      +.-    +..+ -|.    |.--..+..+.+++-...+-  .+......+.++++.+.|+++ |+...+..+.  ...++
T Consensus       247 ~~~----KEvellGC----T~rGapivTlmASfP~V~eR--VkrWdeEv~kaR~fv~elEkigg~~qlG~rPk--~HdLm  314 (382)
T COG1103         247 FPK----KEVELLGC----TVRGAPIVTLMASFPHVVER--VKRWDEEVEKARWFVAELEKIGGVKQLGERPK--NHDLM  314 (382)
T ss_pred             ccc----ceeeeecc----cccCchHHHHHhcCHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhHHHhCCCCc--cccee
Confidence            000    0011 122    22222233444444443321  234455567788999999998 5877765443  33466


Q ss_pred             EEEcCCC--C------CHHHHHHHHHhhCCeE-EccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          310 AVIVPSH--I------NSSEIVRRAWQRYNLS-LGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       310 ~~~~~~~--~------~~~~l~~~L~~~~~i~-v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .|+.|.=  +      ...-+.+.|+++ ||. +.+|    .-.++.+|.++ +++|+++..++++++++++-
T Consensus       315 ~Fetp~f~eIakk~~r~gyFlY~ELK~R-gI~GI~~G----~Tk~~K~svyG-l~~Eqve~V~~afkeI~eky  381 (382)
T COG1103         315 KFETPVFHEIAKKHKRKGYFLYEELKKR-GIHGIQPG----QTKYFKLSVYG-LSWEQVEYVVDAFKEIAEKY  381 (382)
T ss_pred             eecCchHHHHHHhCcCCceeeHHHHHhc-CccccccC----ceeEEEEEeec-CCHHHHHHHHHHHHHHHHhc
Confidence            6776520  0      111255666655 543 3333    23579999888 99999999999999998753

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.93  E-value=5.7e-23  Score=199.07  Aligned_cols=314  Identities=19%  Similarity=0.130  Sum_probs=213.5

Q ss_pred             CCccHHHHHHHHHHHHHHHhcC------------CCCceEEecCChhHHHHHHHhc----cCC-----------------
Q 015729           36 RSPAVPALTKTLLEDIKKIFKT------------TSGTPFLIPTTGTGAWESALTN----TLS-----------------   82 (401)
Q Consensus        36 ~~~~~~~~~~~l~~~la~~~g~------------~~~~~i~~~~g~t~a~~~~~~~----~~~-----------------   82 (401)
                      .++....+..++.+.++++++.            +....-++++|||+|+..++.+    .+.                 
T Consensus       123 ~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~  202 (522)
T TIGR03799       123 TSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAAL  202 (522)
T ss_pred             cCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhh
Confidence            4566777788888888888852            1123368899999999876632    221                 


Q ss_pred             -----CCCeEEEEcCCcchHHHHHHHHHcCC---cEEEEeCCCCCCCChHHHHHHHhccCCCCceEE--EEEecCCCccc
Q 015729           83 -----PGDRIISFLIGQFSLLWIDQQQRLNF---NVDVVESDWGEGAKLDVLASKLAADTAHTIKAI--CIVHNETATGV  152 (401)
Q Consensus        83 -----~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i--~~~~~~n~tG~  152 (401)
                           ++..|+++..+|+|..  +.++..|+   +++.|+++.++.+|+++|++.++++...+++.+  +.+.+++.+|.
T Consensus       203 ~~~~~~~~~v~~S~~~H~S~~--kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGa  280 (522)
T TIGR03799       203 KHYGYDGLAILVSERGHYSLG--KAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGN  280 (522)
T ss_pred             hhccCCceEEEECCCchHHHH--HHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCC
Confidence                 2346777778888764  66777787   899999999999999999999874221233444  44466789999


Q ss_pred             ccchHHHHHHhhhcCCCcEEEEecccccCcceec-----cCc-ccceEEEecCCCcccCCCcceEEEecH-HHHHHhccC
Q 015729          153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR-----MDE-WGIDVALTGSQKALSLPTGMGIVCASP-KALEASKTA  225 (401)
Q Consensus       153 ~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~-----~~~-~~~di~~~s~~K~l~g~~g~G~l~~~~-~~~~~~~~~  225 (401)
                      +.|+++|.++|++  +|+|+++|+|++.+.+..+     +.. .++|.+++++|||+.+|.|+|++++++ ...+.+...
T Consensus       281 iDpl~eIa~i~~~--~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~~  358 (522)
T TIGR03799       281 IDPLDEMADIAQE--LGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEHH  358 (522)
T ss_pred             cCCHHHHHHHHHH--cCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhccC
Confidence            9999999999999  9999999999987655443     333 278999999999999999999999875 444444331


Q ss_pred             CCCcccc-chHHH-HHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 015729          226 KSVRVFF-DWKDY-IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE  302 (401)
Q Consensus       226 ~~~~~~~-~~~~~-~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~  302 (401)
                       ..+... ...+. ...++      ++.+.. ...++++++.+...|++.+.++..++++++.+.|++. ++++..+.  
T Consensus       359 -~~Yl~~~~~~d~~~~~le------gsR~~~-al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p--  428 (522)
T TIGR03799       359 -AEYILRKGSKDLGSHTLE------GSRPGM-AMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEP--  428 (522)
T ss_pred             -cchhcCCCCCccccceee------cCcchH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCC--
Confidence             111000 00000 01122      223332 3468999999999999999999999999999999987 88887642  


Q ss_pred             cCCceeEEEEc-CCCCC-----------------H----HHHHHHHHhhCCeEEccCCC-----CCCC-cEEEEeecc-c
Q 015729          303 WFSDTVTAVIV-PSHIN-----------------S----SEIVRRAWQRYNLSLGLGLN-----KVAG-KVFRIGHLG-H  353 (401)
Q Consensus       303 ~~~~~~~~~~~-~~~~~-----------------~----~~l~~~L~~~~~i~v~~g~~-----~~~~-~~~Ri~~~~-~  353 (401)
                       .. .+++|++ |.+..                 .    ..+.+++.+...+++....-     ...+ ..+|+++.+ .
T Consensus       429 -~l-~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~  506 (522)
T TIGR03799       429 -EL-CLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPL  506 (522)
T ss_pred             -Cc-cEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCC
Confidence             23 3566664 33210                 0    24555555553455443321     1112 349998755 5


Q ss_pred             CCHHHHHHHHHH
Q 015729          354 LNELQLLGCLAG  365 (401)
Q Consensus       354 ~~~~di~~~~~~  365 (401)
                      +|++|++.+++.
T Consensus       507 tt~~~i~~~l~~  518 (522)
T TIGR03799       507 TTHEILQDILDE  518 (522)
T ss_pred             CCHHHHHHHHHH
Confidence            668889887764

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.93  E-value=4.7e-23  Score=197.26  Aligned_cols=307  Identities=18%  Similarity=0.158  Sum_probs=209.6

Q ss_pred             hHHHHHHHccCcCC--CCC-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC---------CCC-CeE
Q 015729           21 PDQVIRAMNRNNED--YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL---------SPG-DRI   87 (401)
Q Consensus        21 ~~~v~~a~~~~~~~--~~~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~---------~~g-d~v   87 (401)
                      +|.+.+++.+....  +.. ....+...++.+.++++.+.+   .+++++||++|++.++....         ++| ++|
T Consensus        59 ~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~v  135 (401)
T PRK00854         59 HPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALTGSH---KVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEI  135 (401)
T ss_pred             CHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCCCC---EEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceE
Confidence            45555555553321  111 112356778999999998764   38999999999999986542         123 688


Q ss_pred             EEEcCCcchHHHHHHHH-----------HcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc-
Q 015729           88 ISFLIGQFSLLWIDQQQ-----------RLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-  155 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~-----------~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~-  155 (401)
                      ++....+|+........           ....++..++.     .|++++++.+.    +++++|++++++||+|.+.| 
T Consensus       136 i~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~i~----~~~~aii~e~~~~~~G~~~~~  206 (401)
T PRK00854        136 IVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-----GDAEALEAAIT----PNTVAFLVEPIQGEAGVIIPP  206 (401)
T ss_pred             EEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-----CCHHHHHHHhC----CCeEEEEEccccCCCCCcCCC
Confidence            99888887764221110           00112333332     27999999886    36799999999999999987 


Q ss_pred             ---hHHHHHHhhhcCCCcEEEEecccc-cCcce--e--ccCcccceEEEecCCCcccCCC-cceEEEecHHHHHHhccCC
Q 015729          156 ---LSKVRKLLDEYRHPALFLVDGVSS-ICAID--F--RMDEWGIDVALTGSQKALSLPT-GMGIVCASPKALEASKTAK  226 (401)
Q Consensus       156 ---l~~i~~l~~~~~~~~~li~D~a~~-~~~~~--~--~~~~~~~di~~~s~~K~l~g~~-g~G~l~~~~~~~~~~~~~~  226 (401)
                         +++|.++|++  +|+++|+|++|+ +|...  +  +.....+|+++++  |+++++. ++|+++.+++..+.+....
T Consensus       207 ~~~l~~l~~l~~~--~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~--K~l~gg~~~ig~v~~~~~~~~~l~~~~  282 (401)
T PRK00854        207 AGYFTRVRELCTA--NNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIG--KALSGGFYPVSAVLSNSEVLGVLKPGQ  282 (401)
T ss_pred             HHHHHHHHHHHHH--cCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEec--ccccCCccCeEEEEEcHHHHhcccCCC
Confidence               8999999999  999999999997 43321  1  1122346888775  9997663 5799999999877664321


Q ss_pred             CCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCc
Q 015729          227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD  306 (401)
Q Consensus       227 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~  306 (401)
                      .                +.  .++.++..+++..++++.+.+.+   ..++++++.+++.+.|++++........  ..+
T Consensus       283 ~----------------~~--t~~~~~~~~aa~~a~L~~l~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~~~~--g~g  339 (401)
T PRK00854        283 H----------------GS--TFGGNPLACAVARAALKVLTEEG---MIENAAEMGAYFLEGLRSIRSNIVREVR--GRG  339 (401)
T ss_pred             C----------------CC--CCCcCHHHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHhhccCceEEEe--ccc
Confidence            0                11  22346666777888888766533   5678888999999999887543221111  234


Q ss_pred             eeEEEEc-CCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          307 TVTAVIV-PSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       307 ~~~~~~~-~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      .++.+.+ ++..+..++++.|.++ ||.+.+.    .++++|++++..++++|+++++++|++++.
T Consensus       340 ~~~~i~~~~~~~~~~~~~~~L~~~-GV~v~~~----~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        340 LMLAVELEPEAGGARQYCEALKER-GLLAKDT----HDHTIRLAPPLVITREQVDWALEQIAKVLA  400 (401)
T ss_pred             eEEEEEEecCchhHHHHHHHHHHC-CeEEecC----CCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence            4555544 3333567899999876 9998632    246899998888999999999999998764

>PRK08637 hypothetical protein; Provisional

Probab=99.93  E-value=8.3e-23  Score=194.44  Aligned_cols=336  Identities=13%  Similarity=0.040  Sum_probs=208.0

Q ss_pred             ccCCCcCChHHHHHHHccCc-CCCCCccHHHHHHHHHHHHHHHhcC-----CC--CceEEecCChhHHHHHHHhccCCCC
Q 015729           13 FVPGPVHIPDQVIRAMNRNN-EDYRSPAVPALTKTLLEDIKKIFKT-----TS--GTPFLIPTTGTGAWESALTNTLSPG   84 (401)
Q Consensus        13 ~~~~p~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~-----~~--~~~i~~~~g~t~a~~~~~~~~~~~g   84 (401)
                      ..+++..+.+.+.+++.+.. ....++.......++|+.+++++..     ..  .+++++|+|+++|+..++.+++++|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~g   93 (388)
T PRK08637         14 TEKGGPMYLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVDQG   93 (388)
T ss_pred             ecCCCcchHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcCCC
Confidence            34444466677777776532 2222344445577888888876632     21  1458999999999999999999999


Q ss_pred             CeEEEEcCCcchHHHHHHHHHcCCcEEEEeCC-CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchH---HHH
Q 015729           85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS---KVR  160 (401)
Q Consensus        85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~---~i~  160 (401)
                      |+|++++|+|+.+. .......|++++.+++. .++.+|++++++.++....+..+++++++|+||||.+++.+   +|+
T Consensus        94 d~Vlv~~P~y~~~~-~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~  172 (388)
T PRK08637         94 DTVLLPDHNWGNYK-LTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIV  172 (388)
T ss_pred             CEEEEcCCCCccHH-HHHHHhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            99999999776554 22234579999999983 45578999999988611102335677888999999999755   455


Q ss_pred             HHhhh--c-CCCcEEEEecccccCcce-------e-cc-Ccc-cc-eEEEecCCCccc-CCCcceEEEec------HHHH
Q 015729          161 KLLDE--Y-RHPALFLVDGVSSICAID-------F-RM-DEW-GI-DVALTGSQKALS-LPTGMGIVCAS------PKAL  219 (401)
Q Consensus       161 ~l~~~--~-~~~~~li~D~a~~~~~~~-------~-~~-~~~-~~-di~~~s~~K~l~-g~~g~G~l~~~------~~~~  219 (401)
                      ++|++  + .++++||+|+++......       + .. ... ++ .+.+.|.+|.++ .+..+||+++.      +++.
T Consensus       173 ~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~  252 (388)
T PRK08637        173 EAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVK  252 (388)
T ss_pred             HHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHH
Confidence            55542  1 279999999998633210       0 00 111 22 233458889653 23457999864      4555


Q ss_pred             HHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHH-HHhcHHHHHHHHHHHHHHHHHHHHHc----CC
Q 015729          220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI-FEEGLENVIERHRRLGKATRLAVEAW----GL  294 (401)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~-~~~g~~~~~~~~~~~~~~l~~~L~~~----g~  294 (401)
                      +.+....            .......  .++.+.....++.++++.- ....+++.+..++++.+.+.+.|++.    ++
T Consensus       253 ~~~~~~~------------~~~~~~~--~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~  318 (388)
T PRK08637        253 EALEKKV------------KGLIRSN--ISNGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAW  318 (388)
T ss_pred             HHHHHHH------------HHHhhcc--cCCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence            4443210            0000000  1123333333333343210 00112334445666666777777664    34


Q ss_pred             ccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          295 KNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .+..+    .++.++|++++ +.+..++.+.|.+++||.+...    ..+++||++.. .+++++++++++|.++++.+
T Consensus       319 ~~~~~----~~g~~~~~~l~-~~~~~~l~~~l~~~~gv~~~~~----~~~~iRi~~~~-~~~~~i~~~~~~l~~~~~~~  387 (388)
T PRK08637        319 QAYPF----NSGYFMCLKLK-GVDAEELRVHLLEKYGIGTIAL----NETDLRIAFSC-VEEEDIPELFDSIYKAIKDL  387 (388)
T ss_pred             ccccc----cceEEEEecCC-hHHHHHHHHHHhhhcceEEEec----cCCceEEEeec-CCHHHHHHHHHHHHHHHHhc
Confidence            43332    34568888885 3456789898876569887632    35689997655 78999999999999988754

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=99.93  E-value=9.6e-23  Score=180.62  Aligned_cols=339  Identities=17%  Similarity=0.187  Sum_probs=243.0

Q ss_pred             CcccccCCCcCChHHHHHHHcc-----Cc-------CCCCCccHHHHHHHHHHHHHHHhcCCCCceEEec-CChhHHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNR-----NN-------EDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP-TTGTGAWES   75 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~-----~~-------~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~-~g~t~a~~~   75 (401)
                      +.++|++||..++++|++.+++     ..       .+||+..+.....+.++.++++++.+..+.|+|+ +|+|.+...
T Consensus         5 ~~~nFsaGPa~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~   84 (365)
T COG1932           5 RVYNFSAGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAM   84 (365)
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHH
Confidence            5899999999999999988777     22       3588888999999999999999999988778775 566677888


Q ss_pred             HHhccCCCCCe--EEEEcCCcchHHHHHHHHHcCC--cEEEEeC---CCCCCCChHHHHHHHhccCCCCceEEEEEecCC
Q 015729           76 ALTNTLSPGDR--IISFLIGQFSLLWIDQQQRLNF--NVDVVES---DWGEGAKLDVLASKLAADTAHTIKAICIVHNET  148 (401)
Q Consensus        76 ~~~~~~~~gd~--vl~~~~~~~~~~~~~~~~~~g~--~~~~v~~---~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n  148 (401)
                      +..+++.....  |.+   ++++....+.++..+-  ++..+..   +....++++...  +++    +..-+.+++.++
T Consensus        85 ~p~nLl~~~~~~yv~~---g~Ws~~a~~eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~----~~ayv~~~~NeT  155 (365)
T COG1932          85 APMNLLGKRGTDYVDT---GAWSEFAIKEAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSD----NDAYVHFCWNET  155 (365)
T ss_pred             HHHhhhcccCceeEee---eehhHhHHHHHHHhcccccccccceeccCccCCCChhhcc--cCC----CccEEEEecCCc
Confidence            88888876543  444   4555543344555553  2222221   222233443322  221    224589999999


Q ss_pred             CcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCC
Q 015729          149 ATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV  228 (401)
Q Consensus       149 ~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~  228 (401)
                      .+|+..+.      ....+.+.++++|.++.+++.++|+.+  .|++.++.+|.+ ||.|++++++++++++++.....+
T Consensus       156 i~Gv~v~~------~p~~~~~~~~v~D~SS~ilsr~iDvsk--~dviyagaQKnl-GpaGltvvIvr~~~l~r~~~~~~P  226 (365)
T COG1932         156 ISGVEVPE------LPDIGSDGLLVADASSAILSRPIDVSK--YDVIYAGAQKNL-GPAGLTVVIVRPDLLERAESYTLP  226 (365)
T ss_pred             ccceEccC------CCCCCCCceEEEecccHHhcCCCChhH--cceEEEehhhcc-CccceEEEEEcHHHHhcccccCCc
Confidence            99998871      111223378999999999999999884  899999999999 699999999999999988764211


Q ss_pred             ccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCce
Q 015729          229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT  307 (401)
Q Consensus       229 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  307 (401)
                      . .+++..   ...++ +..+||+...++.+..++++++..| ++.+.++..+.++.|.+.+++.++-.....+..+|.+
T Consensus       227 ~-if~y~~---~~~~~-s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~fy~~~v~~~~RS~m  301 (365)
T COG1932         227 S-IFDYLT---HADNG-SMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSDFYRNLVAKANRSRM  301 (365)
T ss_pred             h-Hhhchh---hhccC-CccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCccccccchhhccce
Confidence            1 122211   23333 4588999999999999999999876 9999999999999999999997543333233557878


Q ss_pred             eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       308 ~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .+.|.+.+.--.+.+...+.++ |+..--|...  .+.+|++++.+.+.++++.+++.+++..++.
T Consensus       302 nV~f~~~~~~ld~~fv~eae~~-gl~~lkGhr~--vgGmRasiynA~~~e~veaL~~fm~~f~~~~  364 (365)
T COG1932         302 NVTFTLVDAELDKGFVAEAEAA-GLIYLKGHRS--VGGLRASIYNAVPLEDVEALTDFMDWFEETY  364 (365)
T ss_pred             eEEEEcCcHHHHHHHHHHHHHc-CCceeccccC--CCceeeeeecCCCHHHHHHHHHHHHHHHHhh
Confidence            8888875432224555555545 6665556322  3339999999999999999999998887653

>PLN02242 methionine gamma-lyase

Probab=99.93  E-value=3.4e-23  Score=197.00  Aligned_cols=295  Identities=14%  Similarity=0.102  Sum_probs=201.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHH--HH-HHHHcCCcEEEEeCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLW--ID-QQQRLNFNVDVVESD  116 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--~~-~~~~~g~~~~~v~~~  116 (401)
                      ......++++.+++++|.+.   +++++||++|+..++.+++++||+|+++.+.|.+...  .. ..+..|++++.++..
T Consensus        74 ~~Pt~~~LE~~lA~l~g~~~---~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~  150 (418)
T PLN02242         74 FNPTVLNLGRQMAALEGTEA---AYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDIT  150 (418)
T ss_pred             CChhHHHHHHHHHHHhCCCe---EEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCC
Confidence            45678899999999999876   6789999999999999999999999999887655531  11 224478887777643


Q ss_pred             CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEE
Q 015729          117 WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVAL  196 (401)
Q Consensus       117 ~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~  196 (401)
                           |+++++++++++   ++++|++++++||||.+.|+++|.++|++  +|++||+|++|+.+.  ++....+.|+++
T Consensus       151 -----d~e~l~~~i~~~---~tklV~lesp~NPtG~v~dl~~I~~la~~--~gi~livDea~~~~~--~~~~~~g~divv  218 (418)
T PLN02242        151 -----DLEAVKKAVVPG---KTKVLYFESISNPTLTVADIPELARIAHE--KGVTVVVDNTFAPMV--LSPARLGADVVV  218 (418)
T ss_pred             -----CHHHHHHhcCcC---CCEEEEEecCCCCCCcccCHHHHHHHHHH--hCCEEEEECCCCccC--CCHHHcCCcEEE
Confidence                 899999988642   47999999999999999999999999999  999999999986443  344456799999


Q ss_pred             ecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHH
Q 015729          197 TGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENV  274 (401)
Q Consensus       197 ~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~  274 (401)
                      .|.+|++++...  .|+++.++++++.+......          .....|    ..++.     +.+++.......+...
T Consensus       219 ~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~----------~~~~~g----~~~~~-----~~A~l~~~~l~tl~~r  279 (418)
T PLN02242        219 HSISKFISGGADIIAGAVCGPAELVNSMMDLHHG----------ALMLLG----PTMNP-----KVAFELSERLPHLSLR  279 (418)
T ss_pred             EeCccccCCCCCceEEEEEcCHHHHHHHHHHhhh----------hhhccC----CCCCH-----HHHHHHHcCCCcHHHH
Confidence            999999965432  48999998887766532110          000112    12222     1222222222235667


Q ss_pred             HHHHHHHHHHHHHHHHHcCCccccCC-C---c-----------cCCceeEEEEcCCCCCHHHHHHHHHhhC----CeEEc
Q 015729          275 IERHRRLGKATRLAVEAWGLKNCTQK-E---E-----------WFSDTVTAVIVPSHINSSEIVRRAWQRY----NLSLG  335 (401)
Q Consensus       275 ~~~~~~~~~~l~~~L~~~g~~~~~~~-~---~-----------~~~~~~~~~~~~~~~~~~~l~~~L~~~~----~i~v~  335 (401)
                      +++..++++.+.+.|++.++++..+. +   .           ...+.+++|.+.+...+..+.+.|. -.    .+.+.
T Consensus       280 ~~~~~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~f~~~l~-~~~~~~~~~~s  358 (418)
T PLN02242        280 MKEHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERANRLMRYLQ-NSTQFGFMAVS  358 (418)
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCHHHHHHHHHHhh-cccccceeeec
Confidence            78899999999999999876665332 0   0           1245688888832112334444442 11    22333


Q ss_pred             cCCC------C-----------------CCCcEEEEeecccCCHH-HHHHHHHHHHHHHHhc
Q 015729          336 LGLN------K-----------------VAGKVFRIGHLGHLNEL-QLLGCLAGVEMILKDV  373 (401)
Q Consensus       336 ~g~~------~-----------------~~~~~~Ri~~~~~~~~~-di~~~~~~i~~~l~~~  373 (401)
                      .|..      +                 ...+.+|||+..    | |.|.+++.|+.+|+.+
T Consensus       359 lG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl----E~~~~dli~dl~~al~~~  416 (418)
T PLN02242        359 LGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGY----TGTLEQRWSQFEKALSAM  416 (418)
T ss_pred             CCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecC----CCCHHHHHHHHHHHHHHh
Confidence            3321      0                 013569998654    6 3777888888777654

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.93  E-value=6.2e-23  Score=196.52  Aligned_cols=311  Identities=18%  Similarity=0.155  Sum_probs=212.1

Q ss_pred             ChHHHHHHHccCcCC--CCCcc-HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC----------CCCCe
Q 015729           20 IPDQVIRAMNRNNED--YRSPA-VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL----------SPGDR   86 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~~~~~-~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~----------~~gd~   86 (401)
                      .+|.|++++.+....  +.... ..+...++++.++++.+.+   .++++++|++|++.++....          ..+++
T Consensus        48 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~  124 (400)
T PTZ00125         48 CHPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITDLFGYD---KVLPMNSGAEAGETALKFARKWGYEVKGIPENQAK  124 (400)
T ss_pred             CCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHhCCCCC---EEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCe
Confidence            356677666664321  21111 2356778889888887653   48999999999999886532          13478


Q ss_pred             EEEEcCCcchHHHHHHHHHcCCc-----------EEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc
Q 015729           87 IISFLIGQFSLLWIDQQQRLNFN-----------VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN  155 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~~-----------~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~  155 (401)
                      |++.+.++|+..+..+....+..           +..++     ..|++++++.++.   +++++|+++.++|++|.+.+
T Consensus       125 vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~le~~l~~---~~~~~v~~ep~~~~~G~~~~  196 (400)
T PTZ00125        125 IIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVD-----YNDVEALEKLLQD---PNVAAFIVEPIQGEAGVIVP  196 (400)
T ss_pred             EEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeC-----CCCHHHHHHHhCC---CCeEEEEEcCccCCCCCccC
Confidence            99999888887644333221111           11111     1289999999862   46899999999999999997


Q ss_pred             ----hHHHHHHhhhcCCCcEEEEecccc-cCc----ceeccCcccceEEEecCCCcccCCC-cceEEEecHHHHHHhccC
Q 015729          156 ----LSKVRKLLDEYRHPALFLVDGVSS-ICA----IDFRMDEWGIDVALTGSQKALSLPT-GMGIVCASPKALEASKTA  225 (401)
Q Consensus       156 ----l~~i~~l~~~~~~~~~li~D~a~~-~~~----~~~~~~~~~~di~~~s~~K~l~g~~-g~G~l~~~~~~~~~~~~~  225 (401)
                          +++|.++|++  +|+++|+|++|. +|.    ...+.....+|++++|  |+++++. ++|++++++++.+.+...
T Consensus       197 ~~~~l~~l~~l~~~--~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~~s--K~l~~g~~~ig~v~~~~~~~~~~~~~  272 (400)
T PTZ00125        197 DDGYLKQVYELCKK--YNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLLG--KALSGGLYPISAVLANDDVMLVIKPG  272 (400)
T ss_pred             CHHHHHHHHHHHHH--cCCEEEEeccccCCCccchhhHHHhcCCCCCEEEEc--ccccCCCcCcEEEEEcHHHHhhccCC
Confidence                8999999999  999999999986 321    1122223346887765  9997664 789999999988877542


Q ss_pred             CCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CC-ccccCCCcc
Q 015729          226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GL-KNCTQKEEW  303 (401)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~~~~  303 (401)
                      ..                +.  .++.++..+++..++++.+.+++   ..++..++.+++++.|+++ +. ......  .
T Consensus       273 ~~----------------~~--t~~~~~~~~~aa~~~l~~i~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~--~  329 (400)
T PTZ00125        273 EH----------------GS--TYGGNPLACAVAVEALEVLKEEK---LAENAQRLGEVFRDGLKELLKKSPWVKEI--R  329 (400)
T ss_pred             CC----------------CC--CCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHhcCCCeEEE--e
Confidence            11                11  12244555677777888776654   3455666777778877764 21 111111  1


Q ss_pred             CCceeEEEEcCC--CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          304 FSDTVTAVIVPS--HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       304 ~~~~~~~~~~~~--~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ..+.++++.++.  +.+..++++.|.++ ||.+.++    .++++||++...++++|+++++++|+++++++
T Consensus       330 ~~g~~~~v~~~~~~~~~~~~~~~~l~~~-Gv~v~~~----~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~~  396 (400)
T PTZ00125        330 GKGLLNAIVFDHSDGVNAWDLCLKLKEN-GLLAKPT----HDNIIRFAPPLVITKEQLDQALEIIKKVLKSF  396 (400)
T ss_pred             cccEEEEEEEccCcchHHHHHHHHHHHC-CeEEeec----CCCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence            234567777753  34567888999866 9998764    35689999887889999999999999998875

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.93  E-value=7.4e-23  Score=192.19  Aligned_cols=213  Identities=13%  Similarity=0.129  Sum_probs=161.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCC
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE  119 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  119 (401)
                      ....+|++.|+++.+...   +++++||++|+..++.+++++||+|+++++.|.+..  ........|+++..++.+   
T Consensus        61 pt~~~Le~~iA~le~~~~---~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~---  134 (394)
T PRK09028         61 PTHFAFQAAIVELEGGAG---TALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPM---  134 (394)
T ss_pred             chHHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCC---
Confidence            346689999999987653   789999999999999999999999999999876665  223456688888877633   


Q ss_pred             CCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecC
Q 015729          120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS  199 (401)
Q Consensus       120 ~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~  199 (401)
                        +.+.+++.+++    ++|+|++++|+||+|.+.|+++|.++|++  +|+++++|++++.+. ..+..++|+|+++.|.
T Consensus       135 --~~e~l~~~l~~----~TklV~lespsNPtg~v~dl~~I~~la~~--~g~~lvvD~t~a~p~-~~~Pl~~GaDivv~S~  205 (394)
T PRK09028        135 --IGEGIRELIRP----NTKVLFLESPGSITMEVQDVPTLSRIAHE--HDIVVMLDNTWASPI-NSRPFEMGVDISIQAA  205 (394)
T ss_pred             --CHHHHHHhcCc----CceEEEEECCCCCCCcHHHHHHHHHHHHH--cCCEEEEECCccccc-cCCccccCceEEEEeC
Confidence              56788888863    57999999999999999999999999999  999999999998764 3445578999999999


Q ss_pred             CCcccCCCcc--eEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHH
Q 015729          200 QKALSLPTGM--GIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIER  277 (401)
Q Consensus       200 ~K~l~g~~g~--G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~  277 (401)
                      +||++|+..+  |+++.+++.++++...             . ...|    .+.++..+.   ..++-++  -+.-++++
T Consensus       206 tK~l~Gh~d~~~G~~~~~~~~~~~l~~~-------------~-~~~G----~~~~p~~a~---l~~rgl~--TL~lR~~~  262 (394)
T PRK09028        206 TKYIVGHSDVMLGTATANEKHWDQLREH-------------S-YLMG----QCTSPDDVY---LAMRGLR--TLGVRLAQ  262 (394)
T ss_pred             CeEecCCCCEEEEEEECCHHHHHHHHHH-------------H-HhcC----CCCCHHHHH---HHHcccC--cHHHHHHH
Confidence            9999877543  7777777765544321             0 0113    235553222   2222221  25678889


Q ss_pred             HHHHHHHHHHHHHHc
Q 015729          278 HRRLGKATRLAVEAW  292 (401)
Q Consensus       278 ~~~~~~~l~~~L~~~  292 (401)
                      ..+++..+.+.|++.
T Consensus       263 ~~~na~~la~~L~~~  277 (394)
T PRK09028        263 HEKNALKVANWLATR  277 (394)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999975

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.92  E-value=1e-22  Score=194.20  Aligned_cols=304  Identities=16%  Similarity=0.125  Sum_probs=206.2

Q ss_pred             ChHHHHHHHccCcCC--CCC-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC---------CCC-Ce
Q 015729           20 IPDQVIRAMNRNNED--YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL---------SPG-DR   86 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~~~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~---------~~g-d~   86 (401)
                      -+|.+.+++.+....  +.. ....+...++.++++++.+.+   .++++++|++|++.++....         ++| ++
T Consensus        57 ~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~  133 (396)
T PRK04073         57 RHPKIIQALKDQADKVTLTSRAFHSDQLGPWYEKVAKLTGKD---MVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAE  133 (396)
T ss_pred             CCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhcCCCC---eEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCE
Confidence            456666666553321  111 112345567888888887643   48999999999999885421         134 67


Q ss_pred             EEEEcCCcchHHHHHHHHHcCC------------cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccccc
Q 015729           87 IISFLIGQFSLLWIDQQQRLNF------------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN  154 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~  154 (401)
                      |+..+.++|+.....+.- .+.            .+..++.+     |++++++.++    ++++++++++++||+|.+.
T Consensus       134 ii~~~~~~HG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~i~----~~~~~viiep~~~~~G~~~  203 (396)
T PRK04073        134 IIACEGNFHGRTMAAVSL-SSEEEYKRGFGPMLPGIKKIPYG-----DLEALKAAIT----PNTAAFLVEPIQGEAGINI  203 (396)
T ss_pred             EEEECCCcCCCCHHHHhh-cCCcccccCCCCCCCCceEeCCC-----CHHHHHHhcc----cCeEEEEEcCccCCCCCcc
Confidence            888888888765322211 111            12223222     7899998886    3579999999999999998


Q ss_pred             c----hHHHHHHhhhcCCCcEEEEecccccCcc-----eeccCcccceEEEecCCCcccCC-CcceEEEecHHHHHHhcc
Q 015729          155 N----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKT  224 (401)
Q Consensus       155 ~----l~~i~~l~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~  224 (401)
                      |    +++|.++|++  +|+++|+|++|.....     ..+.....+|++++|  |.++++ .++|++++++++.+.+..
T Consensus       204 ~~~~~l~~l~~l~~~--~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~s--K~lg~gg~~ig~~~~~~~i~~~~~~  279 (396)
T PRK04073        204 PPEGFLKAARELCKE--ENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYILG--KALGGGVFPISCVAANRDILGVFTP  279 (396)
T ss_pred             CCHHHHHHHHHHHHH--cCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEEec--ccccCCCCcceEEEEcHHHHhhhcC
Confidence            6    7899999999  9999999999883221     123333457877764  988654 458999999998776643


Q ss_pred             CCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccC
Q 015729          225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWF  304 (401)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~  304 (401)
                      ...                +  ..++.++..+++..++++.+.+++   ..++..++.+++.+.|++++........  .
T Consensus       280 ~~~----------------~--~t~~~~~~~~aaa~aaL~~~~~~~---l~~~~~~~~~~l~~~L~~l~~~~i~~~~--~  336 (396)
T PRK04073        280 GSH----------------G--STFGGNPLACAVSIAALEVLEEEK---LPERSLELGEYFKEQLKEIDNPMIKEVR--G  336 (396)
T ss_pred             CCC----------------C--CCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhhcCCccccee--c
Confidence            210                1  122355666777778888776543   5567777899999999887433222111  2


Q ss_pred             CceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          305 SDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       305 ~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      .+.++.+.++.  +..++.+.|+++ ||.+.+.    .++++||++...+|++|+++++++|++++
T Consensus       337 ~g~~~~~~~~~--~~~~~~~~l~~~-Gv~~~~~----~~~~iRi~p~l~~t~e~i~~~~~~l~~~l  395 (396)
T PRK04073        337 RGLFIGVELNE--PARPYCEALKEE-GLLCKET----HETVIRFAPPLVITKEELDWAFEKIKAVL  395 (396)
T ss_pred             ceEEEEEEecc--hHHHHHHHHHHC-CeEEecC----CCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence            34566777743  467889999876 9998643    24689999887889999999999998875

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.92  E-value=7e-23  Score=194.85  Aligned_cols=287  Identities=16%  Similarity=0.124  Sum_probs=195.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc---CC----CCCeEEEEcCCcchHHHHHHHHHcCCcEE--
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT---LS----PGDRIISFLIGQFSLLWIDQQQRLNFNVD--  111 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~---~~----~gd~vl~~~~~~~~~~~~~~~~~~g~~~~--  111 (401)
                      .+...++++.+++++|.+   .+++++||++|+..++..+   ..    ++|+|++++++|++.....  ...+....  
T Consensus        68 ~~~~~~l~~~la~~~g~~---~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~--~~~~~~~~~~  142 (379)
T TIGR00707        68 TEPQEELAEKLVEHSGAD---RVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGA--LSATGQPKYQ  142 (379)
T ss_pred             CHHHHHHHHHHHhhCCCC---EEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHH--HHhcCChhhh
Confidence            466889999999999875   3899999999999887643   22    3799999999877654221  11122111  


Q ss_pred             --EEeCCCCCCC----ChHHHHHHHhccCCCCceEEEEEecCCCccccc----chHHHHHHhhhcCCCcEEEEecccccC
Q 015729          112 --VVESDWGEGA----KLDVLASKLAADTAHTIKAICIVHNETATGVTN----NLSKVRKLLDEYRHPALFLVDGVSSIC  181 (401)
Q Consensus       112 --~v~~~~~~~~----d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~----~l~~i~~l~~~~~~~~~li~D~a~~~~  181 (401)
                        ..+...+...    |++++++.+++    ++++++++++++++|...    ++++|.++|++  +++++|+|++|...
T Consensus       143 ~~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~--~~~~~i~De~~~~~  216 (379)
T TIGR00707       143 KGFEPLVPGFSYAPYNDIESLKKAIDD----ETAAVIVEPIQGEGGVNPASAEFLKALREICKD--KDALLIFDEVQTGI  216 (379)
T ss_pred             ccCCCCCCCceeeCCCCHHHHHHHhhh----CeeEEEEEccccCCCCccCCHHHHHHHHHHHHH--cCCEEEEeccccCC
Confidence              1111111111    79999998874    568999988888888653    37889999999  99999999998722


Q ss_pred             cc-----eeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHH
Q 015729          182 AI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLL  256 (401)
Q Consensus       182 ~~-----~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  256 (401)
                      ..     .++......|+++  .+|.++++.++|+++.++++.+.+.....                +  ..++.+...+
T Consensus       217 ~~~g~~~~~~~~~~~~d~~t--~sK~~~~G~riG~~~~~~~~~~~~~~~~~----------------~--~~~~~~~~~~  276 (379)
T TIGR00707       217 GRTGKFFAYEHYGIEPDIIT--LAKGLGGGVPIGATLAKEEVAEAFTPGDH----------------G--STFGGNPLAC  276 (379)
T ss_pred             CccchhhhHHhcCCCCCEEE--EcccccCCcccEEEEEcHHHHhhhcCCCC----------------C--CCCCCCHHHH
Confidence            11     1111223456654  46999766678999999988777654211                1  1223566667


Q ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEcc
Q 015729          257 YGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGL  336 (401)
Q Consensus       257 ~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~  336 (401)
                      +++.++++.+...   ...++++++.+++++.|.+++....... ....+.++++.+++  +..++.+.|.++ ||.+.+
T Consensus       277 ~aa~aaL~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~g~~~~~~~~~--~~~~~~~~l~~~-Gv~v~~  349 (379)
T TIGR00707       277 AAALAVLEVIEKE---RLLENVKEKGDYFKERLEELGKNYPNKE-VRGKGLMLGIELEA--PCKDIVKKALEK-GLLVNC  349 (379)
T ss_pred             HHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHhhCCCCc-cccCceEEEEEecC--cHHHHHHHHHHC-CcEEee
Confidence            7788888876542   4667778888888888877532221111 11234567777753  467888988876 999986


Q ss_pred             CCCCCCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          337 GLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       337 g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      +.    .+++|++++...+++++++++++|+++
T Consensus       350 ~~----~~~lRi~~~~~~t~~~i~~~~~~l~~~  378 (379)
T TIGR00707       350 AG----PKVLRFLPPLIITKEEIDEAVSALEEA  378 (379)
T ss_pred             CC----CCEEEEECCCcCCHHHHHHHHHHHHHh
Confidence            42    368999887778999999999999875

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.92  E-value=5.6e-23  Score=193.81  Aligned_cols=287  Identities=14%  Similarity=0.103  Sum_probs=202.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCC
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE  119 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  119 (401)
                      ....++++.+++++|.+.   ++++++|+.|+..++. ++++||+|+++.+.|.+..  +...+...|++++.++..   
T Consensus        47 p~~~~le~~la~l~g~~~---~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~---  119 (378)
T TIGR01329        47 PTRTALESLLAKLDKADR---AFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTT---  119 (378)
T ss_pred             hHHHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCC---
Confidence            457899999999999843   6667778889987665 7899999999988877654  445567789999999864   


Q ss_pred             CCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecC
Q 015729          120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS  199 (401)
Q Consensus       120 ~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~  199 (401)
                        |+++++++++    ++++++++++++||+|.+.|+++|.++|++  +|+++|+|++++.+..... ...++|++++|.
T Consensus       120 --d~~~le~~i~----~~tklv~le~psnptg~v~dl~~I~~la~~--~g~~vivD~a~~~~~~~~~-l~~g~Di~v~S~  190 (378)
T TIGR01329       120 --DLDKVKAALG----PKTKLVLLESPTNPLQKIVDIRKISEMAHA--QNALVVVDNTMMSPLLCNP-LELGADIVYHSA  190 (378)
T ss_pred             --CHHHHHHhcC----cCceEEEEECCCCCCCeeecHHHHHHHHHH--cCCEEEEECCCcccccCCh-hhcCCcEEEEec
Confidence              7999999987    367999999999999999999999999999  9999999999876543222 245899999999


Q ss_pred             CCcccCCCc--ceEEEecHHH-HHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHH
Q 015729          200 QKALSLPTG--MGIVCASPKA-LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE  276 (401)
Q Consensus       200 ~K~l~g~~g--~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~  276 (401)
                      +|+++|+.+  .|+++++++. .+++....             . ..|.    ..+..     .+.+-...-..+..+.+
T Consensus       191 tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~-------------~-~~G~----~~~~~-----~a~l~~~~l~tl~~R~e  247 (378)
T TIGR01329       191 TKFLAGHSDVMAGVLAVKGEEIAKKVYFLQ-------------N-STGS----GLAPF-----DCWLLLRGIKTLAIRIE  247 (378)
T ss_pred             ceeccCCccceeEEEEeCcHHHHHHHHHHH-------------H-hcCC----cCCHH-----HHHHHHccCCCHHHHHH
Confidence            999987766  6888886543 34443210             0 0121    22332     11211111123677888


Q ss_pred             HHHHHHHHHHHHHHHc-CC-ccccC-------------CCccCCceeEEEEcCCCCC-HHHHHHHHHhhCCeEEccCCC-
Q 015729          277 RHRRLGKATRLAVEAW-GL-KNCTQ-------------KEEWFSDTVTAVIVPSHIN-SSEIVRRAWQRYNLSLGLGLN-  339 (401)
Q Consensus       277 ~~~~~~~~l~~~L~~~-g~-~~~~~-------------~~~~~~~~~~~~~~~~~~~-~~~l~~~L~~~~~i~v~~g~~-  339 (401)
                      +..+++..+.+.|++. .+ ++..+             +. ...+.++.|.+ ++.+ +.++...| +.+++.++.|.. 
T Consensus       248 ~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~-~g~~~~~sf~~-~~~~~~~~~~~~L-~~~~i~~s~G~~~  324 (378)
T TIGR01329       248 KQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQA-KGAGSVLSFET-GSVALSKRLVEAT-KLFSITVSFGSVN  324 (378)
T ss_pred             HHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhC-CCcceEEEEEE-CCHHHHHHHHHhC-cCcccccCCCCCC
Confidence            8889999999999864 22 11111             11 12456888998 5544 56788887 455777666632 


Q ss_pred             -----C-----------------CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          340 -----K-----------------VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       340 -----~-----------------~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                           +                 ..++.+|||+..    ||.|.+++-|+.+|+..+
T Consensus       325 sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~~~  377 (378)
T TIGR01329       325 SLISMPCFMSHASIPAEVREERGLPEDLVRLSVGI----EDVDDLISDLDIAFVTAP  377 (378)
T ss_pred             ceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHhcc
Confidence                 0                 113579998654    788888888888887543

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.92  E-value=4e-24  Score=195.52  Aligned_cols=226  Identities=16%  Similarity=0.185  Sum_probs=174.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC-
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-  118 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-  118 (401)
                      +...+.++++.+++++|.+.  .+++++|+|.|+..++.+++++||+|++..++|.+..  ......|++++.++.+.+ 
T Consensus        57 ~~g~i~~~~~~~A~~~ga~~--~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~--~~~~~~g~~~~~v~~~~~~  132 (294)
T cd00615          57 PTGPIKEAQELAARAFGAKH--TFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVI--NGLVLSGAVPVYLKPERNP  132 (294)
T ss_pred             CChHHHHHHHHHHHHhCCCC--EEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHH--HHHHHCCCEEEEecCccCc
Confidence            34568899999999999865  2555899999999999999999999999999988875  335568999998876543 


Q ss_pred             -----CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccC-----cceeccC
Q 015729          119 -----EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSIC-----AIDFRMD  188 (401)
Q Consensus       119 -----~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~-----~~~~~~~  188 (401)
                           +.+|++++++++++.+  ++++++++++ |++|.+.|+++|.++|++  +|+++|+|++|+..     ..+.+..
T Consensus       133 ~~~~~~~i~~~~l~~~l~~~~--~~k~v~l~~p-~~~G~~~dl~~I~~~~~~--~g~~livDeA~~~~~~~~~~~~~~~~  207 (294)
T cd00615         133 YYGIAGGIPPETFKKALIEHP--DAKAAVITNP-TYYGICYNLRKIVEEAHH--RGLPVLVDEAHGAHFRFHPILPSSAA  207 (294)
T ss_pred             ccCcCCCCCHHHHHHHHHhCC--CceEEEEECC-CCCCEecCHHHHHHHHHh--cCCeEEEECcchhhhccCcccCcchh
Confidence                 3689999999997532  5789999987 789999999999999999  99999999998752     2233444


Q ss_pred             cccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHH
Q 015729          189 EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFE  268 (401)
Q Consensus       189 ~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~  268 (401)
                      ..++|+++.|.||+++++.+.|++.++++.....          .+......+.     ..+++...++++..+++.+..
T Consensus       208 ~~~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~----------~~~~~~~~~~-----ttsps~~~~asl~~a~~~~~~  272 (294)
T cd00615         208 MAGADIVVQSTHKTLPALTQGSMIHVKGDLVNPD----------RVNEALNLHQ-----STSPSYLILASLDVARAMMAL  272 (294)
T ss_pred             hcCCcEEEEchhcccchHhHHHHHHhCCCcCCHH----------HHHHHHHHHC-----CCCcHHHHHHHHHHHHHHHHH
Confidence            5689999999999997767667777765521100          0111112222     335888889999999998876


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHH
Q 015729          269 EGLENVIERHRRLGKATRLAVE  290 (401)
Q Consensus       269 ~g~~~~~~~~~~~~~~l~~~L~  290 (401)
                      .| ++..++..++.+++++.|+
T Consensus       273 ~g-~~~~~~~~~~~~~~r~~l~  293 (294)
T cd00615         273 EG-KELVEELIELALYARQEIN  293 (294)
T ss_pred             Hh-HHHHHHHHHHHHHHHHHHh
Confidence            66 4567888888888888875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.92  E-value=9.4e-23  Score=194.33  Aligned_cols=288  Identities=16%  Similarity=0.104  Sum_probs=195.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc----CCCCC----eEEEEcCCcchHHHHHHHHHcCCcEEEE
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT----LSPGD----RIISFLIGQFSLLWIDQQQRLNFNVDVV  113 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~----~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~v  113 (401)
                      +...++.+++++..+.   +.+++++||++|++.+++..    ..+||    +|++.+++||+...... ...+. ....
T Consensus        73 ~~~~~la~~l~~~~~~---~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~-~~~~~-~~~~  147 (389)
T PRK01278         73 PEQERLAERLVENSFA---DKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATI-AAGGQ-EKYL  147 (389)
T ss_pred             hHHHHHHHHHHhhCCC---CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHH-hccCC-hhhc
Confidence            4456788888887643   34999999999999988653    34565    89999999888763222 11121 1111


Q ss_pred             ----eCCCCC----CCChHHHHHHHhccCCCCceEEEEEecCCCccccc----chHHHHHHhhhcCCCcEEEEecccccC
Q 015729          114 ----ESDWGE----GAKLDVLASKLAADTAHTIKAICIVHNETATGVTN----NLSKVRKLLDEYRHPALFLVDGVSSIC  181 (401)
Q Consensus       114 ----~~~~~~----~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~----~l~~i~~l~~~~~~~~~li~D~a~~~~  181 (401)
                          +...+.    ..|++++++.+++    ++++|+++.+++++|...    .+++|.++|++  +|+++|+|++|...
T Consensus       148 ~~~~~~~~~~~~~~~~d~~~l~~~l~~----~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~--~g~~lI~DEv~~g~  221 (389)
T PRK01278        148 EGFGPLVPGFDQVPFGDIEALKAAITP----NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDE--NGLLLIFDEVQCGM  221 (389)
T ss_pred             ccCCCCCCCceEeCCCCHHHHHHhhCC----CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHH--cCCEEEEeccccCC
Confidence                111111    1489999998863    679999999899999443    47889999999  99999999998732


Q ss_pred             cc-----eeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHH
Q 015729          182 AI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLL  256 (401)
Q Consensus       182 ~~-----~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  256 (401)
                      ..     ..+.....+|+++  .+|.++++.++|+++++++..+.+....                  ....++.++..+
T Consensus       222 g~~g~~~~~~~~~~~pdi~t--~sK~l~~G~~ig~~~~~~~~~~~~~~~~------------------~~~t~~~~~~~~  281 (389)
T PRK01278        222 GRTGKLFAHEWAGVTPDIMA--VAKGIGGGFPLGACLATEEAAKGMTPGT------------------HGSTYGGNPLAM  281 (389)
T ss_pred             CcCCcceeecccCCCCCEEE--EehhccCCcceEEEEEcHHHHhccCCCC------------------CCCCCCccHHHH
Confidence            11     1111223356654  5699976666899999998877664321                  111334566677


Q ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCc-cccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeE
Q 015729          257 YGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLK-NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLS  333 (401)
Q Consensus       257 ~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~  333 (401)
                      +++.++++.+.+.   ...++.+++.+++++.|+++  ... +.....  ..+.+++++++.  +..++++.|.++ ||.
T Consensus       282 aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v~--g~G~~~~i~~~~--~~~~~~~~l~~~-GV~  353 (389)
T PRK01278        282 AVGNAVLDVILAP---GFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVR--GKGLLLGLKCVV--PNRDLVQALRDE-GLL  353 (389)
T ss_pred             HHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHhhCCCceeeEe--cccEEEEEEEec--CHHHHHHHHHHC-CeE
Confidence            7788888877543   34556666777777777664  122 222111  234566666632  577899999887 999


Q ss_pred             EccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          334 LGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       334 v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      +.++.    .+++||++...++++++++++++|++++++
T Consensus       354 ~~p~~----~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~  388 (389)
T PRK01278        354 TVGAG----DNVVRLLPPLIITEEEIDEALERLERAAES  388 (389)
T ss_pred             EeecC----CCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence            87662    468999887778999999999999998865

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.92  E-value=3e-23  Score=196.54  Aligned_cols=290  Identities=14%  Similarity=0.102  Sum_probs=199.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      .....++++.+++++|.+.   .++++||+.|+..++.+++++||+|+++.+.|.+..  +.......|+++..++.   
T Consensus        60 ~pt~~~Le~~lA~l~G~~~---al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~---  133 (386)
T PRK06767         60 NPTVKLFEERMAVLEGGEE---ALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDM---  133 (386)
T ss_pred             CcchHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCC---
Confidence            3457899999999999754   567778889999988888999999999988766554  33344556776666653   


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                        .|++++++++++    ++++|++++|+||+|.+.|+++|.++|++  +|+++|+|++++.+....+. ..++|++++|
T Consensus       134 --~d~~~l~~~i~~----~tklV~lesp~NptG~v~dl~~I~~la~~--~g~~vivD~a~a~~~~~~pl-~~g~Div~~S  204 (386)
T PRK06767        134 --ETEADIENKIRP----NTKLIFVETPINPTMKLIDLKQVIRVAKR--NGLLVIVDNTFCSPYLQRPL-ELGCDAVVHS  204 (386)
T ss_pred             --CCHHHHHHhhCc----CceEEEEeCCCCCCceecCHHHHHHHHHH--cCCEEEEECCCcccccCCch-hcCCcEEEec
Confidence              278999998874    56999999999999999999999999999  99999999998755433222 4578999999


Q ss_pred             CCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHH
Q 015729          199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE  276 (401)
Q Consensus       199 ~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~  276 (401)
                      .+|+++|+..  .|+++++++.+.++....            . ...|.    ..+...++....+++     .+..+++
T Consensus       205 ~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~------------~-~~~g~----~~~~~~a~l~~~~L~-----tl~~r~~  262 (386)
T PRK06767        205 ATKYIGGHGDVVAGVTICKTRALAEKIRPM------------R-KDIGG----IMAPFDAWLLLRGLK-----TLAVRMD  262 (386)
T ss_pred             CcceecCCCCceeEEEEeChHHHHHHHHHH------------H-HHhCC----CCCHHHHHHHHcCCC-----cHHHHHH
Confidence            9999965432  489999988765543110            0 00121    233322222222221     2456778


Q ss_pred             HHHHHHHHHHHHHHHc-CCcccc-CCCc------cCCceeEEEEcCCC-CCHHHHHHHHHhhCCeEEccCCC------C-
Q 015729          277 RHRRLGKATRLAVEAW-GLKNCT-QKEE------WFSDTVTAVIVPSH-INSSEIVRRAWQRYNLSLGLGLN------K-  340 (401)
Q Consensus       277 ~~~~~~~~l~~~L~~~-g~~~~~-~~~~------~~~~~~~~~~~~~~-~~~~~l~~~L~~~~~i~v~~g~~------~-  340 (401)
                      +.+++++.+.+.|++. +++... ++.+      ...+.++.|.++.+ .+..++.+.|. .+++.+..|..      + 
T Consensus       263 ~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~-~~~~~~s~G~~~sl~~~p~  341 (386)
T PRK06767        263 RHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLH-FITIAVSLGDTETLIQHPA  341 (386)
T ss_pred             HHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCC-ccEEecCCCCcCccccCCC
Confidence            8899999999999986 666322 1100      01345788888432 23556777774 34666655521      0 


Q ss_pred             ----------------CCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          341 ----------------VAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       341 ----------------~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                                      ...+.+|||+..    ||.+.+++-|+.+|+.
T Consensus       342 ~~~~~~~~~~~~~~~gi~~~l~R~svGl----E~~~dl~~dl~~al~~  385 (386)
T PRK06767        342 TMTHAAIPAELRQEMGIYDNLIRLSVGL----ESWEDIVSDLEQALKK  385 (386)
T ss_pred             ccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHhh
Confidence                            013569998654    6778888888777754

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.92  E-value=6.3e-23  Score=194.57  Aligned_cols=214  Identities=20%  Similarity=0.136  Sum_probs=159.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      .....+++++++++.|.+.   .++++||++|+..++.+++++||+|+++.+.|.+..  +...+...|++++.++.   
T Consensus        59 ~p~~~~Le~~lA~l~g~~~---~v~~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~---  132 (405)
T PRK08776         59 NPTRDLLGEALAELEGGAG---GVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADL---  132 (405)
T ss_pred             ChHHHHHHHHHHHHhCCCc---eEEEcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECC---
Confidence            3456789999999999754   466777899999999899999999999998877643  44556667888887764   


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                        .|++++++++++    +++++++++|+||+|.+.++++|.++|++  +|+++|+|++|+.+... ....+++|++++|
T Consensus       133 --~d~~~l~~~i~~----~tklV~l~~P~NPtG~v~dl~~I~~la~~--~gi~vIvD~a~a~~~~~-~pl~~gaDivv~S  203 (405)
T PRK08776        133 --TDPRSLADALAQ----SPKLVLIETPSNPLLRITDLRFVIEAAHK--VGALTVVDNTFLSPALQ-KPLEFGADLVLHS  203 (405)
T ss_pred             --CCHHHHHHhcCc----CCeEEEEECCCCCCCccCCHHHHHHHHHH--cCCEEEEECCCcccccC-CcccccCCEEEec
Confidence              278999998864    56999999999999999999999999999  99999999999865432 2224689999999


Q ss_pred             CCCcccCCCc--ceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHH
Q 015729          199 SQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI  275 (401)
Q Consensus       199 ~~K~l~g~~g--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  275 (401)
                      .+|+++|+.+  .|+++.+ +++.+++...             .. ..|    .+.++..+......++     .++.++
T Consensus       204 ~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~-------------~~-~~g----~~~s~~~a~l~~~gl~-----tl~~r~  260 (405)
T PRK08776        204 TTKYINGHSDVVGGAVVARDAELHQQLVWW-------------AN-ALG----LTGSPFDAFLTLRGLR-----TLDARL  260 (405)
T ss_pred             CceeecCCCCceEEEEEeCCHHHHHHHHHH-------------HH-hcC----CCCCHHHHHHHHhhhC-----cHHHHH
Confidence            9999986654  3777664 5554444311             00 012    1244443333332222     356788


Q ss_pred             HHHHHHHHHHHHHHHHc
Q 015729          276 ERHRRLGKATRLAVEAW  292 (401)
Q Consensus       276 ~~~~~~~~~l~~~L~~~  292 (401)
                      ++..+++..+.+.|++.
T Consensus       261 ~~~~~na~~la~~L~~~  277 (405)
T PRK08776        261 RVHQENADAIAALLDGH  277 (405)
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            89999999999999874

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.92  E-value=1.4e-22  Score=189.65  Aligned_cols=291  Identities=11%  Similarity=0.098  Sum_probs=203.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      ......|+++|+++-|.+.   .++++||+.|+..++.+++++||+|+++...|.+..  +...++..|+++.+++..  
T Consensus        61 nPt~~~le~~la~LEg~~~---a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~--  135 (395)
T PRK08114         61 TLTHFSLQEAMCELEGGAG---CALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPL--  135 (395)
T ss_pred             ChhHHHHHHHHHHHhCCCe---EEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCC--
Confidence            4557789999999988765   677888999999999999999999999988776665  334567789999988743  


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                         |++++++++++    ++++|++.++.||+|.+.|+++|.++|+++++|+++++|++++.+.. ++..++|+|++++|
T Consensus       136 ---d~~~l~~~l~~----~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~-~~pl~~GaDivv~S  207 (395)
T PRK08114        136 ---IGADIAKLIQP----NTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL-FKALDFGIDISIQA  207 (395)
T ss_pred             ---CHHHHHHhcCC----CceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc-cCHHHcCCcEEEEc
Confidence               78899999974    56999999999999999999999999999433699999999998766 88888999999999


Q ss_pred             CCCcccCCC--cceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHH
Q 015729          199 SQKALSLPT--GMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE  276 (401)
Q Consensus       199 ~~K~l~g~~--g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~  276 (401)
                      .||+++|+.  ++|+++.+++.++.+...              ....|.    ..++.   .++..++-++  -+.-+++
T Consensus       208 ~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~--------------~~~~G~----~~~p~---~a~l~~rgl~--TL~lR~~  264 (395)
T PRK08114        208 GTKYLVGHSDAMIGTAVANARCWEQLREN--------------SYLMGQ----MVDAD---TAYMTSRGLR--TLGVRLR  264 (395)
T ss_pred             CcccccCCCcceeEEEEcCHHHHHHHHHH--------------HHhccC----CCCHH---HHHHHHcCCC--cHHHHHH
Confidence            999998875  568888888765544311              011132    34442   2222222111  1567888


Q ss_pred             HHHHHHHHHHHHHHHc-CCc-cccC----CCc--------cCCceeEEEEcCCCCCHHHHHHHHHhhCC---eEEccCCC
Q 015729          277 RHRRLGKATRLAVEAW-GLK-NCTQ----KEE--------WFSDTVTAVIVPSHINSSEIVRRAWQRYN---LSLGLGLN  339 (401)
Q Consensus       277 ~~~~~~~~l~~~L~~~-g~~-~~~~----~~~--------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---i~v~~g~~  339 (401)
                      +..+++..+.+.|++. .++ +..+    .+.        ...+.++.|.+..+.+.++..+.+ ++..   +.+..|..
T Consensus       265 ~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~f~-~~l~l~~~a~SlGg~  343 (395)
T PRK08114        265 QHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYL-DNFSLFSMAYSWGGF  343 (395)
T ss_pred             HHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHHHHHHHH-HhCCcceeecccCCc
Confidence            9999999999999974 221 1111    000        124568889984321233333322 2222   23332211


Q ss_pred             ---------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          340 ---------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       340 ---------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                                           ...++.+|+|+..    ||.|.+++-|+.+|+.
T Consensus       344 ~SLi~~~~~~~~~~~~~~~~~~~~~~liRlSvGl----Ed~~DLi~Dl~~Al~~  393 (395)
T PRK08114        344 ESLILANQPEEIAAIRPAGEVDFTGTLIRLHIGL----EDVDDLIADLAAGFAR  393 (395)
T ss_pred             cceeccCCchhhhccCChhHhcCCCCeEEEEecc----CCHHHHHHHHHHHHHh
Confidence                                 0123679998654    6777788877777754

>PLN02397 aspartate transaminase

Probab=99.92  E-value=2.5e-22  Score=192.70  Aligned_cols=313  Identities=16%  Similarity=0.101  Sum_probs=199.8

Q ss_pred             HHHHHHHccC--cCCCCCccHHHHHHHHHHHHHHHhcCCC-----CceE--EecCChhHH--HHHHHhccCCCCCeEEEE
Q 015729           22 DQVIRAMNRN--NEDYRSPAVPALTKTLLEDIKKIFKTTS-----GTPF--LIPTTGTGA--WESALTNTLSPGDRIISF   90 (401)
Q Consensus        22 ~~v~~a~~~~--~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~~i--~~~~g~t~a--~~~~~~~~~~~gd~vl~~   90 (401)
                      +.+.+++...  ......|.......++|+.+++++....     ++.+  ..+.+++++  +...+...+.|||+|+++
T Consensus        69 ~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~  148 (423)
T PLN02397         69 NVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIP  148 (423)
T ss_pred             hHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEe
Confidence            4566663221  1112245556678899999999875432     1223  113333333  444445556799999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeC-CC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccch---HHHHHHhhh
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVES-DW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLLDE  165 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l---~~i~~l~~~  165 (401)
                      +|.|+.+.  ..++..|++++.+++ +. +..+|++.+++.+.+.+ .+++++++++|+||||.+++.   ++|.++|++
T Consensus       149 ~P~y~~y~--~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~-~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~  225 (423)
T PLN02397        149 NPTWGNHH--NIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAP-DGSFVLLHACAHNPTGVDPTPEQWEQISDLIKS  225 (423)
T ss_pred             CCCchhHH--HHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Confidence            99776653  567888999999987 32 35789999988886432 356888889999999999974   557778888


Q ss_pred             cCCCcEEEEecccccCcce--------e-ccCcc-cceEEEecCCCccc-CCCcceEEE--e-cHHHHHHhccCCCCccc
Q 015729          166 YRHPALFLVDGVSSICAID--------F-RMDEW-GIDVALTGSQKALS-LPTGMGIVC--A-SPKALEASKTAKSVRVF  231 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~~~--------~-~~~~~-~~di~~~s~~K~l~-g~~g~G~l~--~-~~~~~~~~~~~~~~~~~  231 (401)
                        +|++||+|++|......        . ..... ...+++.|.+|.++ .+-++|+++  . +++....+...      
T Consensus       226 --~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~------  297 (423)
T PLN02397        226 --KNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQ------  297 (423)
T ss_pred             --CCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHH------
Confidence              99999999998744321        0 11111 13578889999995 344569984  3 45543332210      


Q ss_pred             cchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHH--H-H--hcHHHHHHHHHHHHHHHHHHHHHcC----CccccCCCc
Q 015729          232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI--F-E--EGLENVIERHRRLGKATRLAVEAWG----LKNCTQKEE  302 (401)
Q Consensus       232 ~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~--~-~--~g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~  302 (401)
                            .......  ...+++.....++..+++.-  . .  ..+++.++++.++++.+.+.|+++|    +++..+   
T Consensus       298 ------~~~~~~~--~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~~p---  366 (423)
T PLN02397        298 ------LKLIARP--MYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHITK---  366 (423)
T ss_pred             ------HHHHHhc--ccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccC---
Confidence                  0000001  01123333333333333211  1 1  1145678889999999999999886    554433   


Q ss_pred             cCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                       ..+.++|+.+    + .++++.|++++||.+.      .++  |+++.+ .+++++++++++|+++++
T Consensus       367 -~gg~fl~~~l----~-~~~~~~Ll~~~~V~v~------~~~--Ri~~~~-~~~~~i~~~~~~i~~~~~  420 (423)
T PLN02397        367 -QIGMFSFTGL----N-KEQVDRMTKEYHIYMT------RDG--RISMAG-LSSKNVPYLADAIHAVVT  420 (423)
T ss_pred             -CceEEEecCC----C-HHHHHHHHHhCCEEEC------CCC--eEEEee-CCHHHHHHHHHHHHHHHh
Confidence             3456777666    2 4588899888899985      123  997754 799999999999999974

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.92  E-value=2.5e-23  Score=196.24  Aligned_cols=215  Identities=18%  Similarity=0.145  Sum_probs=164.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDW  117 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~  117 (401)
                      ..+...++++++++++|.+.   .+++++|++|+..++.+++++||+|+++.+.|++..  +...+...|++++.++.+ 
T Consensus        38 ~~p~~~~le~~la~l~g~~~---a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-  113 (369)
T cd00614          38 GNPTVDALEKKLAALEGGEA---ALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPD-  113 (369)
T ss_pred             CChhHHHHHHHHHHHHCCCC---EEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCCC-
Confidence            45678899999999998754   677889999999999999999999999998887765  334566789888888754 


Q ss_pred             CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEe
Q 015729          118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT  197 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~  197 (401)
                          |++++++++++    ++++|++++++||+|.+.|+++|.++|++  +|+++|+|++++.+.. ......++|+++.
T Consensus       114 ----d~~~l~~~i~~----~~~~v~~e~~~np~g~~~dl~~i~~la~~--~g~~livD~t~~~~~~-~~~~~~g~Divv~  182 (369)
T cd00614         114 ----DPEALEAAIKP----ETKLVYVESPTNPTLKVVDIEAIAELAHE--HGALLVVDNTFATPYL-QRPLELGADIVVH  182 (369)
T ss_pred             ----CHHHHHHhcCC----CCeEEEEECCCCCCCeecCHHHHHHHHHH--cCCEEEEECCCcchhc-CChhhhCCcEEEe
Confidence                68999998864    56999999999999999999999999999  9999999999987643 2223457999999


Q ss_pred             cCCCcccCCC--cceEEEecH-HHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHH
Q 015729          198 GSQKALSLPT--GMGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENV  274 (401)
Q Consensus       198 s~~K~l~g~~--g~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~  274 (401)
                      |.+|+++|+.  ..|++++++ ++.+++....            ..      +..+.+....+.+..+++     .+...
T Consensus       183 S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~------------~~------~g~~~~p~~a~~~l~~l~-----tl~~r  239 (369)
T cd00614         183 SATKYIGGHSDVIAGVVVGSGEALIQRLRFLR------------LA------LGTILSPFDAWLLLRGLK-----TLPLR  239 (369)
T ss_pred             ccceeccCCCCceEEEEEeCcHHHHHHHHHHH------------Hh------hCCCCCHHHHHHHHcCCC-----CHHHH
Confidence            9999997543  258999887 6666554321            00      122344433222222222     34567


Q ss_pred             HHHHHHHHHHHHHHHHHc
Q 015729          275 IERHRRLGKATRLAVEAW  292 (401)
Q Consensus       275 ~~~~~~~~~~l~~~L~~~  292 (401)
                      +++..++++++.+.|++.
T Consensus       240 ~~~~~~na~~la~~L~~~  257 (369)
T cd00614         240 MERHSENALKVAEFLEKH  257 (369)
T ss_pred             HHHHHHHHHHHHHHHHcC
Confidence            888899999999999986

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.92  E-value=1e-22  Score=193.14  Aligned_cols=320  Identities=13%  Similarity=0.083  Sum_probs=205.4

Q ss_pred             cccccCCCcCChHHHHHHHccCcCCC-CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEE
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRII   88 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl   88 (401)
                      .|+-+.-..+.++.+.+........+ +.........++++++++++|.+.   ..++++|+.|+..++.+++++||+|+
T Consensus        32 i~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~l~G~~~---~~~~~sG~~Ai~~~l~~~l~~Gd~Vl  108 (398)
T PRK07504         32 LFLTQGFVYDTAEAAEARFKGEDPGFIYSRYSNPTVDMFEKRMCALEGAED---ARATASGMAAVTAAILCQVKAGDHVV  108 (398)
T ss_pred             eECCCCccCCCHHHHHHHhccCcCCceeecCCCchHHHHHHHHHHHhCCCe---eeEecCHHHHHHHHHHHHhCCCCEEE
Confidence            34444334445555554432211111 122224557899999999999876   34577899999888888899999999


Q ss_pred             EEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhc
Q 015729           89 SFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY  166 (401)
Q Consensus        89 ~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~  166 (401)
                      ++.+.|.+..  +...+...|++++.++     ..|++++++++++    ++++|++++|+||+|.+.|+++|.++|++ 
T Consensus       109 ~~~~~y~~~~~~~~~~~~~~G~~v~~vd-----~~d~e~l~~ai~~----~tklV~lesp~NptG~v~dl~~I~~la~~-  178 (398)
T PRK07504        109 AARALFGSCRYVVETLLPRYGIESTLVD-----GLDLDNWEKAVRP----NTKVFFLESPTNPTLEVIDIAAVAKIANQ-  178 (398)
T ss_pred             EcCCchhHHHHHHHHHHhhcCeEEEEEC-----CCCHHHHHHhcCc----CceEEEEECCCCCCcEecCHHHHHHHHHH-
Confidence            9998777654  3344567799888886     2589999998874    56999999999999999999999999999 


Q ss_pred             CCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCC-cc-eEEEecHHHHHH-hccCCCCccccchHHHHHHhhc
Q 015729          167 RHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPT-GM-GIVCASPKALEA-SKTAKSVRVFFDWKDYIKFYNL  243 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~-g~-G~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  243 (401)
                       +|+++|+|++++.+... .....++|++++|.+|+++|+. ++ |+++.+++.+.+ +..            ...  ..
T Consensus       179 -~gi~lvvD~a~a~~~~~-~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~------------~~~--~~  242 (398)
T PRK07504        179 -AGAKLVVDNVFATPLFQ-KPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQD------------YFR--HT  242 (398)
T ss_pred             -cCCEEEEECCccccccC-CchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHH------------HHH--Hh
Confidence             99999999999866432 2335689999999999996532 24 577777765442 211            001  11


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCc-cccC----CCc--------cCCceeE
Q 015729          244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLK-NCTQ----KEE--------WFSDTVT  309 (401)
Q Consensus       244 g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~----~~~--------~~~~~~~  309 (401)
                      |    ...+...++.+..+++.     +..+.++..++++.+.+.|++. ++. +..+    .+.        ...+.++
T Consensus       243 g----~~~s~~~A~~~l~~L~t-----l~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~  313 (398)
T PRK07504        243 G----PSLSPFNAWTLLKGLET-----LPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLV  313 (398)
T ss_pred             C----CCCCHHHHHHHHhccch-----HHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEE
Confidence            2    13444333333333332     4667778889999999999875 432 1111    110        0135688


Q ss_pred             EEEcCCCC-CHHHHHHHHHhhCCeEEccCCC-----------------------CCCCcEEEEeecccCCHHHHHHHHHH
Q 015729          310 AVIVPSHI-NSSEIVRRAWQRYNLSLGLGLN-----------------------KVAGKVFRIGHLGHLNELQLLGCLAG  365 (401)
Q Consensus       310 ~~~~~~~~-~~~~l~~~L~~~~~i~v~~g~~-----------------------~~~~~~~Ri~~~~~~~~~di~~~~~~  365 (401)
                      .|.+.++. .+.++.+.|. -+++.+..|..                       ...++.+|||+..    ||.|.+++.
T Consensus       314 s~~~~~~~~~~~~~~~~l~-~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~d  388 (398)
T PRK07504        314 AFELKGGKEAAFRFLNALK-IVRISNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAGL----EDTDDLIED  388 (398)
T ss_pred             EEEeCCCHHHHHHHHHhCC-cceecccCCCCCeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHH
Confidence            89984221 1223334332 22333322211                       0123569998654    667777777


Q ss_pred             HHHHHHh
Q 015729          366 VEMILKD  372 (401)
Q Consensus       366 i~~~l~~  372 (401)
                      |+.+|+.
T Consensus       389 l~~al~~  395 (398)
T PRK07504        389 LAAALKK  395 (398)
T ss_pred             HHHHHHh
Confidence            7777754

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.92  E-value=1.1e-22  Score=193.19  Aligned_cols=294  Identities=14%  Similarity=0.126  Sum_probs=199.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDW  117 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~  117 (401)
                      ......+|++++++++|.+.   +++++||++|+..++.+++++||+|+++.+.|.+..  +...++..|++++.++.. 
T Consensus        62 ~~p~~~~Le~~iA~~~g~~~---~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-  137 (400)
T PRK06234         62 GNPTSTEVENKLALLEGGEA---AVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTS-  137 (400)
T ss_pred             CCccHHHHHHHHHHHhCCCc---EEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCC-
Confidence            34567899999999999753   788999999999988889999999999998776554  334567789999988754 


Q ss_pred             CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEe
Q 015729          118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT  197 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~  197 (401)
                          |++++++++++    ++++|++++|+||+|.+.|+++|.++|+++++|+++++|++++.+..... ...++|++++
T Consensus       138 ----d~e~l~~~i~~----~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~-l~~g~Divv~  208 (400)
T PRK06234        138 ----NLEEVRNALKA----NTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRP-LQLGADVVVH  208 (400)
T ss_pred             ----CHHHHHHHhcc----CCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCc-hhhCCcEEEe
Confidence                79999999874    56999999999999999999999999999433999999999987643322 2457899999


Q ss_pred             cCCCcccCCC--cceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHH
Q 015729          198 GSQKALSLPT--GMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI  275 (401)
Q Consensus       198 s~~K~l~g~~--g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  275 (401)
                      |.+|+++++.  ..|++++++++++++.....           .. ..|    .+.+...++.....++     .++.++
T Consensus       209 S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~-----------~~-~~g----~~l~p~~a~l~~~~l~-----tl~~r~  267 (400)
T PRK06234        209 SATKYLNGHGDVIAGFVVGKEEFINQVKLFGI-----------KD-MTG----SVIGPFEAFLIIRGMK-----TLQIRM  267 (400)
T ss_pred             eccccccCCCCceeEEEEecHHHHHHHHHHHH-----------HH-hcC----CCCCHHHHHHHHhccC-----cHHHHH
Confidence            9999996433  14999999987776542100           00 011    2344432222222222     245677


Q ss_pred             HHHHHHHHHHHHHHHHc-CCc-c----ccCCCc--------cCCceeEEEEcCCCC-CHHHHHHHHHhhCCeEEccCCC-
Q 015729          276 ERHRRLGKATRLAVEAW-GLK-N----CTQKEE--------WFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLGLGLN-  339 (401)
Q Consensus       276 ~~~~~~~~~l~~~L~~~-g~~-~----~~~~~~--------~~~~~~~~~~~~~~~-~~~~l~~~L~~~~~i~v~~g~~-  339 (401)
                      ++..++++.+.+.|++. .+. +    +...+.        ...+.++.|+++.+. ...++.+.|. -+++.+..|.. 
T Consensus       268 ~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~~~f~~~l~-~~~~~~s~G~~~  346 (400)
T PRK06234        268 EKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNNVK-LATLAVSLGDAE  346 (400)
T ss_pred             HHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhCC-cceEeccCCCCC
Confidence            77888999999999864 221 1    111110        124568889985331 1234444442 23444433311 


Q ss_pred             -----C-----------------CCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          340 -----K-----------------VAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       340 -----~-----------------~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                           +                 ..++.+|||+..    ||.+.+++.++.+|+.
T Consensus       347 sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl----E~~~dl~~dl~~al~~  397 (400)
T PRK06234        347 TLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGL----EDVDDIIADLKQALDL  397 (400)
T ss_pred             ceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHH
Confidence                 0                 123579998654    6777777777777764

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.92  E-value=2e-22  Score=189.36  Aligned_cols=288  Identities=11%  Similarity=0.113  Sum_probs=199.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH-H-HHHHHHcCCcEEEEeCCCCC
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL-W-IDQQQRLNFNVDVVESDWGE  119 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~-~~~~~~~g~~~~~v~~~~~~  119 (401)
                      ....+++++++++.|.+.   +++++||++|+..++.+++++||+|+++++.|++.. + .......|+++..++.+   
T Consensus        50 Pt~~~lE~~lA~l~g~~~---~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~---  123 (377)
T TIGR01324        50 LTHFALQDAMCELEGGAG---CYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPL---  123 (377)
T ss_pred             ccHHHHHHHHHHHhCCCc---EEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCC---
Confidence            456789999999999764   888999999999999999999999999998876654 2 23456678888877533   


Q ss_pred             CCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecC
Q 015729          120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS  199 (401)
Q Consensus       120 ~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~  199 (401)
                        +.+++++++++    ++|+|++++|+||+|.+.|+++|.++|++  +|+++++|++|+.|.. ....++|+|++++|.
T Consensus       124 --~~e~l~~~i~~----~tklV~lesp~Np~g~~~dl~~I~~la~~--~g~~livD~t~a~g~~-~~pl~~gaDivv~S~  194 (377)
T TIGR01324       124 --IGEDIATLIQP----NTKVLFLEAPSSITFEIQDIPAIAKAARN--PGIVIMIDNTWAAGLL-FKPLEHGVDISIQAG  194 (377)
T ss_pred             --CHHHHHHhcCC----CceEEEEECCCCCCCcHHHHHHHHHHHHH--cCCEEEEECCCccccc-cCccccCceEEEecC
Confidence              23788888864    67999999999999999999999999999  9999999999998765 334567899999999


Q ss_pred             CCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHH
Q 015729          200 QKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIER  277 (401)
Q Consensus       200 ~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~  277 (401)
                      +|+++|..+  .|+++.+++.++++...              ....|.    +.++..+..+...++   .  +..++++
T Consensus       195 tK~l~G~~d~~gG~v~~~~~~~~~l~~~--------------~~~~G~----~l~p~~a~~~~rgl~---t--l~~R~~~  251 (377)
T TIGR01324       195 TKYLVGHSDIMIGTVVANARTWDQLREH--------------SYLMGQ----MVDADDAYTTLRGLR---T--LGVRLKQ  251 (377)
T ss_pred             ceeccCCCCceEEEEEeCHHHHHHHHHH--------------HHHhCC----CCCHHHHHHHHhhhh---h--HHHHHHH
Confidence            999987654  48888988876655321              111132    345533333333333   2  3456788


Q ss_pred             HHHHHHHHHHHHHHc-CC-ccccC----CCc--------cCCceeEEEEcCC-C-CCHHHHHHHHHhhCCeEEccCCC--
Q 015729          278 HRRLGKATRLAVEAW-GL-KNCTQ----KEE--------WFSDTVTAVIVPS-H-INSSEIVRRAWQRYNLSLGLGLN--  339 (401)
Q Consensus       278 ~~~~~~~l~~~L~~~-g~-~~~~~----~~~--------~~~~~~~~~~~~~-~-~~~~~l~~~L~~~~~i~v~~g~~--  339 (401)
                      .++++..+.+.|++. .+ ++..+    .+.        ...+.++.|.+.+ + .....+.+.|. -+++.+..|..  
T Consensus       252 ~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~-~~~~~~slG~~~s  330 (377)
T TIGR01324       252 HQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQ-LFGLGYSWGGYES  330 (377)
T ss_pred             HHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCC-cceEeccCCCccc
Confidence            888888899999874 22 11111    110        1346788899842 1 12334555553 23444333311  


Q ss_pred             -----------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          340 -----------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       340 -----------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                                       ...++.+|||+..    ||.|.+++-|+.+|+.
T Consensus       331 l~~~~~~~~~~~~~~~~~~~~~liR~svGl----E~~~dl~~dl~~al~~  376 (377)
T TIGR01324       331 LALCNQPELGHRPNIKRNLEGPLIRVHIGL----ENVDDLKADLKAGFEA  376 (377)
T ss_pred             eeecCCCCCCHHHHHhccCCCCEEEEEeCC----CCHHHHHHHHHHHHhc
Confidence                             0123568998654    6777788777777754

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.92  E-value=1.2e-22  Score=192.17  Aligned_cols=289  Identities=13%  Similarity=0.120  Sum_probs=197.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      .....++++++++++|.+.   .++++||+.|+..++.+++++||+|+++.+.|.+..  +...+...|++++.++.+  
T Consensus        58 ~p~~~~le~~lA~l~g~~~---av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~--  132 (391)
T TIGR01328        58 NPTVSNLEGRIAFLEGTEA---AVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMA--  132 (391)
T ss_pred             CchHHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCC--
Confidence            4567899999999999876   678888999999998888999999999988765443  345567789999988865  


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                         |++++++++++    ++++|++++|+||+|.+.|+++|.++|++  +|+++|+|++++.+..... ...++|++++|
T Consensus       133 ---d~e~l~~~i~~----~tklV~le~p~Np~G~v~dl~~I~~la~~--~gi~livD~a~a~~~~~~~-~~~g~Divv~S  202 (391)
T TIGR01328       133 ---IPEEVKAHIKD----NTKIVYFETPANPTMKLIDMERVCRDAHS--QGVKVIVDNTFATPMLTNP-VALGVDVVVHS  202 (391)
T ss_pred             ---CHHHHHHhhcc----CCeEEEEECCCCCCCcccCHHHHHHHHHH--cCCEEEEECCCchhccCCc-hhcCCCEEEcc
Confidence               79999998874    56999999999999999999999999999  9999999999986643222 24579999999


Q ss_pred             CCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHH
Q 015729          199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE  276 (401)
Q Consensus       199 ~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~  276 (401)
                      .+|+++++..  .|+++.++++++++.....           ..+ .|    ...+...++   .++..++  .+..+++
T Consensus       203 ~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~-----------~~~-~g----~~l~~~~a~---l~l~~L~--tl~~r~~  261 (391)
T TIGR01328       203 ATKYIGGHGDVVAGLICGKAELLQQIRMVGI-----------KDM-TG----SVISPFDAW---LILRGLK--TLNIRMK  261 (391)
T ss_pred             ccccccCCCCceEEEEEcCHHHHHHHHHHHH-----------HhC-CC----CCCCcHHHH---HHHhCcC--cHHHHHH
Confidence            9999975432  4888888887776653110           000 01    123332222   2222121  2456788


Q ss_pred             HHHHHHHHHHHHHHHc-CCcc-ccC----CCc--------cCCceeEEEEcCCCCCHHHHHHHHHhhCCe---EEccCCC
Q 015729          277 RHRRLGKATRLAVEAW-GLKN-CTQ----KEE--------WFSDTVTAVIVPSHINSSEIVRRAWQRYNL---SLGLGLN  339 (401)
Q Consensus       277 ~~~~~~~~l~~~L~~~-g~~~-~~~----~~~--------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i---~v~~g~~  339 (401)
                      +..++++.+.+.|++. ++.. ..+    .+.        ...+.++.|.++ + +..+..+ +.++-.+   .+..|..
T Consensus       262 ~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~-~-~~~~~~~-f~~~l~~~~~~~s~G~~  338 (391)
T TIGR01328       262 RHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELK-G-GFAGAKK-LLNNLKLIRLAVSLGDA  338 (391)
T ss_pred             HHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeC-C-CHHHHHH-HHHhCCcceEecCCCCC
Confidence            8899999999999875 4322 111    100        023568889984 2 2233222 2232232   2222211


Q ss_pred             ------C-----------------CCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          340 ------K-----------------VAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       340 ------~-----------------~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                            +                 ...+.+|||+..    ||.|.+++-|+.+|+.
T Consensus       339 ~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~  390 (391)
T TIGR01328       339 ETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGL----EDADDLIADLKQALDA  390 (391)
T ss_pred             cccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHHhh
Confidence                  0                 113569998644    7788888888887764

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.92  E-value=5.3e-23  Score=193.42  Aligned_cols=289  Identities=13%  Similarity=0.059  Sum_probs=194.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDW  117 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~  117 (401)
                      ......++++.++++.|.+   .+++++|+++|+..++.+++++||+|+++.+.|.+..  +.......|++++.++.  
T Consensus        51 ~npt~~~Le~~lA~leg~e---~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~--  125 (388)
T PRK08861         51 GNPNRGLLEQTLSELESGK---GAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ--  125 (388)
T ss_pred             CCchHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECC--
Confidence            3455779999999999964   3999999999999999999999999999998876544  33344556788887753  


Q ss_pred             CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEe
Q 015729          118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT  197 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~  197 (401)
                         .|++++++++++    ++++|++++|+||||.+.|+++|.++|++  +|+++|+|++++.+..... .+.|+|++++
T Consensus       126 ---~d~e~l~~~i~~----~tklV~lesP~NPtG~v~dl~~I~~la~~--~gi~vIvDea~~~~~~~~p-l~~GaDivv~  195 (388)
T PRK08861        126 ---SDAAALDAALAK----KPKLILLETPSNPLVRVVDIAELCQKAKA--VGALVAVDNTFLTPVLQKP-LELGADFVIH  195 (388)
T ss_pred             ---CCHHHHHHhcCc----CCeEEEEECCCCCCCcccCHHHHHHHHHH--cCCEEEEECCccccccCCC-cccCCCEEEe
Confidence               389999998874    56999999999999999999999999999  9999999999987643322 3468999999


Q ss_pred             cCCCcccCCCc--ceEEEecH-HHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHH
Q 015729          198 GSQKALSLPTG--MGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENV  274 (401)
Q Consensus       198 s~~K~l~g~~g--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~  274 (401)
                      |.||+++|+.+  .|++++++ ++.+++...             .. ..|    ...++..   +...++-++  -+.-+
T Consensus       196 S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~-------------~~-~~G----~~~~p~~---a~l~~rgl~--Tl~lR  252 (388)
T PRK08861        196 STTKYINGHSDVIGGVLITKTKEHAEELAWW-------------GN-CIG----ATGTPFD---SYMTLRGIR--TLGAR  252 (388)
T ss_pred             ecceeccCCCcceeEEEEecHHHHHHHHHHH-------------Hh-ccC----CCCChHH---HHHHHhcCC--CHHHH
Confidence            99999987654  37777754 443333211             00 112    2344432   222222111  25678


Q ss_pred             HHHHHHHHHHHHHHHHHc-CCc-cc----cCCCc--------cCCceeEEEEcCCCCCHHHHHHHHHhh---CCeEEccC
Q 015729          275 IERHRRLGKATRLAVEAW-GLK-NC----TQKEE--------WFSDTVTAVIVPSHINSSEIVRRAWQR---YNLSLGLG  337 (401)
Q Consensus       275 ~~~~~~~~~~l~~~L~~~-g~~-~~----~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~i~v~~g  337 (401)
                      +++..+++..+.+.|++. .+. +.    ...+.        ...+.++.|++. + +.++..+ +.++   +.+.+..|
T Consensus       253 ~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~-~-~~~~~~~-f~~~l~l~~~~~s~G  329 (388)
T PRK08861        253 MRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFA-G-SFEQLKV-FVKALALFSLAESLG  329 (388)
T ss_pred             HHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeC-C-CHHHHHH-HHhcCCcceEccCCC
Confidence            888999999999999874 221 11    11110        124568889984 3 3333322 2232   22233333


Q ss_pred             CC-----------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          338 LN-----------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       338 ~~-----------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ..                       ...++.+|+|+..    ||+|.+++-|+.+++.+
T Consensus       330 ~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----E~~~dli~Dl~~al~~~  384 (388)
T PRK08861        330 GVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVGL----EDAQDLIADLDQAFAKA  384 (388)
T ss_pred             CCcceeeCCCcccccccCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHHHHH
Confidence            11                       0123569998654    66677777777766543

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.92  E-value=2.4e-22  Score=190.29  Aligned_cols=289  Identities=15%  Similarity=0.119  Sum_probs=194.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDW  117 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~  117 (401)
                      ......++++.+++++|.+.   +++++||++|+..++.+++++||+|+++.+.|.+..  +...+...|++++.++.+ 
T Consensus        59 ~~p~~~~le~~la~l~g~~~---~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-  134 (390)
T PRK08133         59 TNPTVTMFQERLAALEGAEA---CVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLT-  134 (390)
T ss_pred             CChHHHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCC-
Confidence            34567899999999999865   788999999999999888999999999988776654  344567789999999864 


Q ss_pred             CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEe
Q 015729          118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT  197 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~  197 (401)
                          |++++++++++    ++++|++++|+||+|.+.|+++|.++|++  +|+++|+|++++.+..... ...++|++++
T Consensus       135 ----d~~~l~~~i~~----~tklV~ie~p~NptG~v~dl~~I~~la~~--~gi~livD~t~~~~~~~~p-l~~g~Divv~  203 (390)
T PRK08133        135 ----DLDAWRAAVRP----NTKLFFLETPSNPLTELADIAALAEIAHA--AGALLVVDNCFCTPALQQP-LKLGADVVIH  203 (390)
T ss_pred             ----CHHHHHHhcCc----CCeEEEEECCCCCCCCcCCHHHHHHHHHH--cCCEEEEECCCcccccCCc-hhhCCcEEEe
Confidence                78999998874    56999999999999999999999999999  9999999999875543222 2457899999


Q ss_pred             cCCCcccCCC-cc-eEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHH
Q 015729          198 GSQKALSLPT-GM-GIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI  275 (401)
Q Consensus       198 s~~K~l~g~~-g~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  275 (401)
                      |.+|++++.. .+ |+++.+++.++++...            ..  ..|    ...+..   .+..++..+.  .+..+.
T Consensus       204 S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~------------~~--~~g----~~~~~~---~a~~~l~gl~--tl~~R~  260 (390)
T PRK08133        204 SATKYLDGQGRVLGGAVVGSKELMEEVFGF------------LR--TAG----PTLSPF---NAWVFLKGLE--TLSLRM  260 (390)
T ss_pred             ecceeecCCcceEeEEEEcCHHHHHHHHHH------------HH--HhC----CCCCHH---HHHHHHcccc--hHHHHH
Confidence            9999996432 23 7788887765544311            01  012    123332   2222222221  256677


Q ss_pred             HHHHHHHHHHHHHHHHc-CCccc-cCC----C--------ccCCceeEEEEcCCCC-CHHHHHHHHHhhCCeEEccCCC-
Q 015729          276 ERHRRLGKATRLAVEAW-GLKNC-TQK----E--------EWFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLGLGLN-  339 (401)
Q Consensus       276 ~~~~~~~~~l~~~L~~~-g~~~~-~~~----~--------~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~~i~v~~g~~-  339 (401)
                      ++..+++..+.+.|++. +++.. .+.    +        ....+.++.|++..+. ....+.+.|. -+.+.+..|.. 
T Consensus       261 ~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~~l~-l~~~~~slG~~~  339 (390)
T PRK08133        261 EAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGREAAWRVIDATR-LISITANLGDTK  339 (390)
T ss_pred             HHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCHHHHHHHHHhCC-cceEeccCCCcc
Confidence            77888999999999875 43221 110    0        0124568889984221 1223333331 12222222210 


Q ss_pred             ------------C----------CCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          340 ------------K----------VAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       340 ------------~----------~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                                  .          ...+.+|||+..    ||.|.+++-|+.+|+
T Consensus       340 sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~  389 (390)
T PRK08133        340 TTITHPATTTHGRLSPEARAAAGITEGLIRVAVGL----EDVADIKADLARGLA  389 (390)
T ss_pred             eeeecCCCCCcccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHhh
Confidence                        0          123579998654    677777777777664

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.92  E-value=1.2e-22  Score=191.73  Aligned_cols=289  Identities=16%  Similarity=0.071  Sum_probs=194.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      .....+++++++++.|.+   .+++++||++|+..++.+++++||+|+++++.|.+..  +.......++++..++    
T Consensus        51 ~pt~~~L~~~lA~l~g~~---~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd----  123 (386)
T PRK08045         51 NPTRDVVQRALAELEGGA---GAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD----  123 (386)
T ss_pred             CccHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeC----
Confidence            455779999999999864   3889999999999999999999999999999877544  3444455566776664    


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                       ..|++++++++++    ++++|++++|+||||.+.|+++|.++|++  +|+++++|+++..+... .....++|+++.|
T Consensus       124 -~~d~e~l~~~l~~----~tklV~l~sP~NPtG~v~di~~I~~ia~~--~g~~vivDeay~~~~~~-~pl~~gaDivv~S  195 (386)
T PRK08045        124 -QGDEQALRAALAE----KPKLVLVESPSNPLLRVVDIAKICHLARE--AGAVSVVDNTFLSPALQ-NPLALGADLVLHS  195 (386)
T ss_pred             -CCCHHHHHHhccc----CCeEEEEECCCCCCCEecCHHHHHHHHHH--cCCEEEEECCCCccccC-CchhhCCCEEEee
Confidence             2489999998874    56999999999999999999999999999  99999999998876432 2235688999999


Q ss_pred             CCCcccCCCc--ceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHH
Q 015729          199 SQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI  275 (401)
Q Consensus       199 ~~K~l~g~~g--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  275 (401)
                      .+|+++|+.+  .|+++.+ +++.+++...            ...+  |    .+.++...   ..++..+.  -+..++
T Consensus       196 ~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~------------~~~~--g----~~~~p~~~---~l~~rgl~--tl~~R~  252 (386)
T PRK08045        196 CTKYLNGHSDVVAGVVIAKDPDVVTELAWW------------ANNI--G----VTGGAFDS---YLLLRGLR--TLVPRM  252 (386)
T ss_pred             cceeccCCCCceeEEEEeCcHHHHHHHHHH------------HHhc--C----CCCCHHHH---HHHHhhhc--cHHHHH
Confidence            9999987765  4777664 5554443211            0111  1    22444322   33333222  256788


Q ss_pred             HHHHHHHHHHHHHHHHc-CCc-c----ccCCCc--------cCCceeEEEEcCCCCC-HHHHHHHHHhhCCeEEccCCC-
Q 015729          276 ERHRRLGKATRLAVEAW-GLK-N----CTQKEE--------WFSDTVTAVIVPSHIN-SSEIVRRAWQRYNLSLGLGLN-  339 (401)
Q Consensus       276 ~~~~~~~~~l~~~L~~~-g~~-~----~~~~~~--------~~~~~~~~~~~~~~~~-~~~l~~~L~~~~~i~v~~g~~-  339 (401)
                      ++..+++..+.+.|++. .++ +    ....+.        ...+.++.|.++++.+ ..++.+.|. -+.+.+..|.. 
T Consensus       253 ~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~-~~~~~~s~G~~~  331 (386)
T PRK08045        253 ELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLS-LFTLAESLGGVE  331 (386)
T ss_pred             HHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhcc-ceeEeccCCCCc
Confidence            89999999999999874 322 1    111100        1235688898843211 223444432 22223222211 


Q ss_pred             ----------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          340 ----------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       340 ----------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                                            ...++.+|+|+..    ||.|.+++-|+++|+.
T Consensus       332 sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~  382 (386)
T PRK08045        332 SLISHAATMTHAGMAPEARAAAGISETLLRISTGI----EDGEDLIADLENGFRA  382 (386)
T ss_pred             eeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHHHH
Confidence                                  0123579998654    6677777777777654

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.92  E-value=3.6e-22  Score=188.91  Aligned_cols=307  Identities=12%  Similarity=0.142  Sum_probs=204.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE  119 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  119 (401)
                      ....+++++.+++++|.+.   +++++||++|+..++.++ +++||+|+++.+.|++..  ..+...|++++.+++++++
T Consensus        30 ~~~~~~~e~~la~~~g~~~---~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~--~~~~~~G~~~v~~d~d~~~  104 (375)
T PRK11706         30 GGFTRRCQQWLEQRFGSAK---VLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTA--NAFVLRGAKIVFVDIRPDT  104 (375)
T ss_pred             CHHHHHHHHHHHHHhCCCe---EEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHH--HHHHHcCCEEEEEecCCCc
Confidence            4567788899999998853   899999999998877654 789999999999877664  4567789999999998764


Q ss_pred             -CCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCccc--ceEEE
Q 015729          120 -GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG--IDVAL  196 (401)
Q Consensus       120 -~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~--~di~~  196 (401)
                       .+|++++++++++    ++++|++++   ++|...++++|.++|++  +|++||+|++|+.|.. .+....+  .|+-+
T Consensus       105 ~~~d~~~le~~i~~----~tk~i~~~~---~~G~~~~~~~i~~la~~--~~i~vIeD~a~a~g~~-~~~~~~g~~~~~~~  174 (375)
T PRK11706        105 MNIDETLIEAAITP----KTRAIVPVH---YAGVACEMDTIMALAKK--HNLFVVEDAAQGVMST-YKGRALGTIGHIGC  174 (375)
T ss_pred             CCcCHHHHHHhcCC----CCeEEEEeC---CCCCccCHHHHHHHHHH--cCCEEEEECccccccc-cCCeeeecCcCEEE
Confidence             7899999999874    568888764   68999999999999999  9999999999998863 1211111  36666


Q ss_pred             ecCC--CcccCCCcceEEEecHHHHHHhccCCCCccccc--hHHHHHH---hhcCCCCCCCCcHHHHHHHHHHHHHHHHh
Q 015729          197 TGSQ--KALSLPTGMGIVCASPKALEASKTAKSVRVFFD--WKDYIKF---YNLGTFWPYTPSIQLLYGLRAALDLIFEE  269 (401)
Q Consensus       197 ~s~~--K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~g~~~~~~~~~~~~~a~~~al~~~~~~  269 (401)
                      +|.|  |.+.++.|.++++.++++.+++...+..+...+  +......   ...|.    +....   .+.+++...+-.
T Consensus       175 ~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~----~~~~~---~~~aa~~~~ql~  247 (375)
T PRK11706        175 FSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGS----SYLPS---ELQAAYLWAQLE  247 (375)
T ss_pred             EeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeeccc----ccCcC---HHHHHHHHHHHH
Confidence            6765  999655554555556777665543321110000  0000000   00111    11111   123333332223


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHcC----Ccccc-CCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC---
Q 015729          270 GLENVIERHRRLGKATRLAVEAWG----LKNCT-QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV---  341 (401)
Q Consensus       270 g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~---  341 (401)
                      .+++..++.+++.+.+.+.|.++.    +.+.. +......+.++++.++++.+..++.+.|.++ ||.++..+.+.   
T Consensus       248 ~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-gI~~~~~~~p~~~~  326 (375)
T PRK11706        248 AADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRDLEDRSALINFLKEA-GIMAVFHYIPLHSS  326 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECCcCCHHHHHHHHHHC-CCCccccCCccCcc
Confidence            356778888888888888887652    22221 1111223445667676556788999999876 98865432110   


Q ss_pred             -------------------CCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          342 -------------------AGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       342 -------------------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                                         ..+.+.+.++...+++|++..++.|++.+
T Consensus       327 ~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~  374 (375)
T PRK11706        327 PAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF  374 (375)
T ss_pred             hhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence                               11337887777889999999999998764

>PRK05968 hypothetical protein; Provisional

Probab=99.92  E-value=1.6e-22  Score=191.55  Aligned_cols=288  Identities=15%  Similarity=0.129  Sum_probs=202.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      .....++++++++++|.+.   .+++++|+.|+..++.+++++||+|+++.+.|.+..  +...+...|++++.++.+  
T Consensus        62 ~p~~~~le~~lA~l~g~~~---av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~--  136 (389)
T PRK05968         62 NPTVRAFEEMLAKLEGAED---ARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGR--  136 (389)
T ss_pred             ChhHHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCC--
Confidence            4558899999999999875   455678889999888888999999999998877654  445677789999988744  


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                         |++++++++.     ++++|++++|.|+++.+.|+++|.++|++  +|+++|+|++++.+.... ....++|++++|
T Consensus       137 ---d~~~l~~~i~-----~tklV~ie~pt~~~~~~~dl~~i~~la~~--~gi~vivD~a~a~~~~~~-p~~~g~Divv~S  205 (389)
T PRK05968        137 ---DEEAVAKALP-----GAKLLYLESPTSWVFELQDVAALAALAKR--HGVVTMIDNSWASPVFQR-PITLGVDLVIHS  205 (389)
T ss_pred             ---CHHHHHHhcc-----cCCEEEEECCCCCCCcHHHHHHHHHHHHH--cCCEEEEECCCcchhccC-chhcCCcEEEee
Confidence               7899998873     46899999999999999999999999999  999999999987664322 234678999999


Q ss_pred             CCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHH
Q 015729          199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE  276 (401)
Q Consensus       199 ~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~  276 (401)
                      .+|+++|+.+  .|+++.+++.++++....            ..+ .|    ...+....+.+..+++     .+..+.+
T Consensus       206 ~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~------------~~~-~g----~~~~~~~A~~~l~~L~-----tl~~r~~  263 (389)
T PRK05968        206 ASKYLGGHSDTVAGVVAGSKEHIARINAEA------------YPY-LG----AKLSPFEAWLLLRGLR-----TLPLRMK  263 (389)
T ss_pred             ccccccCCCCeEEEEEEECHHHHHHHHHHH------------HHh-CC----CCCChHHHHHHHcccC-----cHHHHHH
Confidence            9999987643  588888988876665310            000 11    1233332222222222     3567888


Q ss_pred             HHHHHHHHHHHHHHHc-CCcccc-CC-Cc------cCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC------
Q 015729          277 RHRRLGKATRLAVEAW-GLKNCT-QK-EE------WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV------  341 (401)
Q Consensus       277 ~~~~~~~~l~~~L~~~-g~~~~~-~~-~~------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~------  341 (401)
                      +..++++.+.+.|++. ++.... +. .+      ...+.++.|.++++.+..++.+.|. .+++.++.|....      
T Consensus       264 ~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~~~~~~f~~~L~-~~~~~~s~G~~~slv~p~~  342 (389)
T PRK05968        264 AHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREGIDVRAFADALK-LFRLGVSWGGHESLVVPAE  342 (389)
T ss_pred             HHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCHHHHHHHHHhCC-ccEEecCCCCCCceeeeCc
Confidence            8888899999999986 554332 21 00      0224488888854455667777775 3466655552211      


Q ss_pred             -----------------CCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          342 -----------------AGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       342 -----------------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                                       .++.+|+|+..    |+.+.+++-++.+|+
T Consensus       343 ~~~~~~~~~~~~~~~gi~~~liR~SvGl----E~~~dl~~dl~~al~  385 (389)
T PRK05968        343 VVLQQKAQPNSAARFGVSPRSVRLHVGL----EGTEALWADLEQALA  385 (389)
T ss_pred             ccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHH
Confidence                             13579998766    455555555555554

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.92  E-value=4.6e-22  Score=177.49  Aligned_cols=351  Identities=17%  Similarity=0.162  Sum_probs=246.9

Q ss_pred             cccccCCCcCChHHHHHHHccCcCC--------CCCcc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNED--------YRSPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL   77 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~--------~~~~~----~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~   77 (401)
                      ...+++.=-..+++|++++.....+        .+.|+    .+....-+.++..++||.+...  +-..||++|+.++.
T Consensus        28 ~ieLIASEN~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~an--VQPhSGs~AN~av~  105 (413)
T COG0112          28 HIELIASENFTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYAN--VQPHSGSQANQAVY  105 (413)
T ss_pred             ceeeeeccccCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccc--cCCCCchHHHHHHH
Confidence            3445555556788999988874322        12222    3444556778889999998653  44678899999999


Q ss_pred             hccCCCCCeEEEEcCCcchHH-HHHHHHHcC--CcEEEEeCCCC-CCCChHHHHHHHhccCCCCceEEEEEecCCCcccc
Q 015729           78 TNTLSPGDRIISFLIGQFSLL-WIDQQQRLN--FNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        78 ~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g--~~~~~v~~~~~-~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~  153 (401)
                      .++++|||+|+-.+..+-++. -..-....|  .+.+..+++.+ ..+|.|++++.+.+   .|||+|+.-..-  .-..
T Consensus       106 ~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e---~kPK~ii~G~Sa--Y~r~  180 (413)
T COG0112         106 LALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKE---VKPKLIIAGGSA--YSRP  180 (413)
T ss_pred             HHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHH---hCCCEEEECccc--cccc
Confidence            999999999998877444332 010111123  35566666744 68999999999987   688988876433  3367


Q ss_pred             cchHHHHHHhhhcCCCcEEEEecccccCcc-----eeccCcccceEEEecCCCcccCCCcceEEEecH-HHHHHhccCCC
Q 015729          154 NNLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASP-KALEASKTAKS  227 (401)
Q Consensus       154 ~~l~~i~~l~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~-~~~~~~~~~~~  227 (401)
                      .|.+++.++|++  .|.++.+|.||..|..     +-++.  .+|++++|.||+|.||.| |++.+++ ++.+++.....
T Consensus       181 id~~~~reIad~--VGA~L~~DmAHiaGLVA~G~~p~P~~--~AdvVTtTTHKTlrGPrG-G~Il~~~eel~kkin~aVF  255 (413)
T COG0112         181 IDFKRFREIADE--VGAYLMVDMAHVAGLIAGGVHPNPLP--HADVVTTTTHKTLRGPRG-GIILTNDEELAKKINSAVF  255 (413)
T ss_pred             cCHHHHHHHHHH--hCceEEehHHHHHHHHhcccCCCCCC--ccceEeCCcccCCCCCCc-eEEEeccHHHHHHhhhhcC
Confidence            899999999999  9999999999976532     22222  489999999999998887 8888886 76666654322


Q ss_pred             CccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCce
Q 015729          228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT  307 (401)
Q Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  307 (401)
                      +..                 -++|..+.+++..-|+....+.+++...++..+|++.|.+.|.+.|+++.+..   ..+.
T Consensus       256 Pg~-----------------qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vvsGg---TdnH  315 (413)
T COG0112         256 PGL-----------------QGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVVSGG---TDNH  315 (413)
T ss_pred             Ccc-----------------CCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEecCC---ccce
Confidence            211                 22466677777777777777778899999999999999999999999998732   3344


Q ss_pred             eEEEEcC-CCCCHHHHHHHHHhhCCeEEccCCCCC------CCcEEEEeecccC----CHHHHHHHHHHHHHHHHhcCCC
Q 015729          308 VTAVIVP-SHINSSEIVRRAWQRYNLSLGLGLNKV------AGKVFRIGHLGHL----NELQLLGCLAGVEMILKDVGYP  376 (401)
Q Consensus       308 ~~~~~~~-~~~~~~~l~~~L~~~~~i~v~~g~~~~------~~~~~Ri~~~~~~----~~~di~~~~~~i~~~l~~~~~~  376 (401)
                      ++.+.+. .+++..+....|. +.||.+....-+.      ....+||++..-+    .++|++++.+.|.++++...  
T Consensus       316 l~lVDl~~~~~~Gk~ae~~L~-~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~~~--  392 (413)
T COG0112         316 LVLVDLRSKGLTGKKAEAALE-RAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDGLK--  392 (413)
T ss_pred             EEEEEcccCCCCHHHHHHHHH-HcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhccc--
Confidence            5556653 4567777767664 5599987553222      2334999986633    37899999999999998655  


Q ss_pred             CCcchHHHHHHHHHHccCCC
Q 015729          377 VKLGSGVAAASAYLQNNIPM  396 (401)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~  396 (401)
                       .+.+.+...-.-|.++-|+
T Consensus       393 -~~~~~vk~~V~~l~~~fp~  411 (413)
T COG0112         393 -DVPAEVKEEVAELCRRFPL  411 (413)
T ss_pred             -hhHHHHHHHHHHHHHhCCC
Confidence             3333455555555555554

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.92  E-value=9.7e-23  Score=193.96  Aligned_cols=309  Identities=16%  Similarity=0.150  Sum_probs=225.7

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCC-----CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc---
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNED-----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT---   80 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~---   80 (401)
                      ..+....+++.+++.+.+++......     ...+......+++-..+++++|.+....-.+|.|||+|+..++.+.   
T Consensus        63 ~~~~~~~~~~~~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~  142 (460)
T COG0076          63 RANLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARER  142 (460)
T ss_pred             ceEEEccCCCCCHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHH
Confidence            45677778888888887777764322     2344566778889999999999975555799999999998766331   


Q ss_pred             -C----C-C-----CCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCC
Q 015729           81 -L----S-P-----GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNET  148 (401)
Q Consensus        81 -~----~-~-----gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n  148 (401)
                       .    . .     ..+|+++...|+|.  .+.++..|++.+.++... +.++|++++++++++++...  +|+.+.+++
T Consensus       143 ~~~~~~~~~~~~~~~P~ii~s~~aH~s~--~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g--~vV~~aGtT  218 (460)
T COG0076         143 WRKRALAESGKPGGKPNIVCSETAHFSF--EKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGG--VVVGTAGTT  218 (460)
T ss_pred             HHHHhhhcccccCCCCeEEecCcchhHH--HHHHHHhCCCceeEEeccCccccCHHHHHHHHHhhccCc--eEEEEecCC
Confidence             1    0 0     12688888888876  478899999999999988 68999999999999876322  488888999


Q ss_pred             CcccccchHHHHHHhhhcCCCcEEEEecccccCccee-------ccCcccceEEEecCCCcccCCCcceEEEecHH-HHH
Q 015729          149 ATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF-------RMDEWGIDVALTGSQKALSLPTGMGIVCASPK-ALE  220 (401)
Q Consensus       149 ~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~-------~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~-~~~  220 (401)
                      ++|.+.|+++|.++|++  +++|+|+|+|.+.+.++|       ++.-.++|.++.++||++..|.|+|+++.+++ .+.
T Consensus       219 ~~G~iDdi~~ia~ia~~--~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~  296 (460)
T COG0076         219 DTGSIDDIEELADIAEE--YGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALR  296 (460)
T ss_pred             CCCccCCHHHHHHHHHH--cCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECHHHhh
Confidence            99999999999999999  999999999988776644       33344799999999999999999999999887 444


Q ss_pred             HhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcC-CccccC
Q 015729          221 ASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG-LKNCTQ  299 (401)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~  299 (401)
                      +............  .....     ...++.+...++++.+.+..+..+|+.++.++..++++++.+.|++.| +++...
T Consensus       297 ~~~~~~~~yl~~~--~~~~~-----ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~  369 (460)
T COG0076         297 RILIFADYYLPGG--GIPNF-----TILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNE  369 (460)
T ss_pred             hhhhcccccCCCC--CcCce-----eEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecC
Confidence            4433222111100  00000     111234444677888888888888999999999999999999999985 888763


Q ss_pred             CCccCCceeEEEEcCCCCC-HHHHHHHHHhhCCeEEc
Q 015729          300 KEEWFSDTVTAVIVPSHIN-SSEIVRRAWQRYNLSLG  335 (401)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~-~~~l~~~L~~~~~i~v~  335 (401)
                      .   .. .+++|+.|+..+ ..+...++... |..+.
T Consensus       370 p---~l-~~V~fr~~~~~~~~~~~~~~~~~~-gw~v~  401 (460)
T COG0076         370 P---EL-PIVAFRLKDDEDTLADLSERLDRR-GWQVP  401 (460)
T ss_pred             C---cc-ceEEEEcCCcccchhchHHHHHhc-Cceee
Confidence            2   23 477788855433 34455555433 55443

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.92  E-value=8e-22  Score=198.64  Aligned_cols=351  Identities=11%  Similarity=-0.007  Sum_probs=231.9

Q ss_pred             cccccCCCcCChHHHHHHHccC---cCCC-CCcc-----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH---
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRN---NEDY-RSPA-----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL---   77 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~---~~~~-~~~~-----~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~---   77 (401)
                      .+-.+.+.-.+++.+-+.....   ...| ..+.     ..+.+.++++.++++.|.+..  -+..++|+.|....+   
T Consensus       489 fi~lGsctmk~na~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~elq~~l~eltGmd~~--Sl~p~aGA~gE~agL~ai  566 (939)
T TIGR00461       489 MIPLGSCTMKLNATAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCSITGFDAI--SLQPNSGAQGEYAGLRVI  566 (939)
T ss_pred             CCCCccCCCccCHHHHHHHhcchhhcCcCCCCchHHhHHHHHHHHHHHHHHHHHHCCCCc--ccCCchHHHHHHHHHHHH
Confidence            3444455666666555442221   1212 2333     557788999999999999962  355666776554333   


Q ss_pred             hccC-----CCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccc
Q 015729           78 TNTL-----SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV  152 (401)
Q Consensus        78 ~~~~-----~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~  152 (401)
                      +...     ...++|+++...|.++-  ..++..|++++.|+++.++.+|+++|++++++.. .++++|++++++| +|.
T Consensus       567 R~y~~~rge~~R~~vlip~saHgtnP--asa~~~G~~Vv~V~~d~~G~iDle~L~~~i~~~~-~~taaV~iT~pst-~G~  642 (939)
T TIGR00461       567 RSYHESRGENHRNICLIPVSAHGTNP--ASAAMAGMQVVPVNCDQDGNIDLVDLKNKAEQHG-DELAAVMVTYPST-HGV  642 (939)
T ss_pred             HHHHHhcCCCCCCEEEEEccccCcCH--HHHHHCCCEEEEeccCCCCCcCHHHHHHHHhhcC-CceEEEEEEeCCc-Cce
Confidence            2211     12357888888775553  4477889999999999889999999999997522 3689999999998 788


Q ss_pred             ccc-hHHHHHHhhhcCCCcEEEEecccccC-cceeccCcccceEEEecCCCccc-----CCCcceEEEecHHHHHHhccC
Q 015729          153 TNN-LSKVRKLLDEYRHPALFLVDGVSSIC-AIDFRMDEWGIDVALTGSQKALS-----LPTGMGIVCASPKALEASKTA  225 (401)
Q Consensus       153 ~~~-l~~i~~l~~~~~~~~~li~D~a~~~~-~~~~~~~~~~~di~~~s~~K~l~-----g~~g~G~l~~~~~~~~~~~~~  225 (401)
                      +.+ +++|.++|++  +|.++++|+++..+ ....+..++|+|++.+|.||+|+     |++|+|++++++.+...+...
T Consensus       643 ~e~~I~eI~~iah~--~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~  720 (939)
T TIGR00461       643 FEPTIQHACDIVHS--FGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKH  720 (939)
T ss_pred             ecccHHHHHHHHHH--cCCEEEEEecChhhCCCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCC
Confidence            877 9999999999  99999999998653 33334567899999999999998     667789999998765555433


Q ss_pred             CCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCC
Q 015729          226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS  305 (401)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  305 (401)
                      ..... .+.......+. ......+.+...+...+.-+..+-.+|+++..+....++.|+++.|.+ ++++..+......
T Consensus       721 ~v~~t-~d~~greq~Ig-a~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~~~~~~~  797 (939)
T TIGR00461       721 DVVSM-ITGIGGSKSIG-SVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD-HYPILFVGTLKHV  797 (939)
T ss_pred             ccccc-ccCCCCccccc-cccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc-cCcccccCCCCce
Confidence            21110 00000000000 000011233333445566666677778999999999999999999987 5665543211011


Q ss_pred             ceeEEEEcCC-----CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          306 DTVTAVIVPS-----HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       306 ~~~~~~~~~~-----~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ..-+.+.++.     +.+..++.++|.+. |+......++..+ .+=|.+....+++|+|++++++.++.+++
T Consensus       798 ~hEfv~~~~~~~~~~g~~~~dIakrL~d~-G~hapt~~~pv~g-~lmiepTE~eskeelD~f~~al~~I~~e~  868 (939)
T TIGR00461       798 AHECILDLRPLKAKTGIEAIDVAKRLQDY-GFHAPTLSFPVPG-TLMVEPTESESLEELDRFCDAMIAIKEEI  868 (939)
T ss_pred             eEEEEEeccchhhhcCCCHHHHHHHHHhC-CeeccccCCccCC-eEEEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence            1224455531     46788999999876 8764332223334 54454445678999999999998876655

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK08354 putative aminotransferase; Provisional

Probab=99.92  E-value=1.2e-21  Score=180.95  Aligned_cols=283  Identities=12%  Similarity=0.012  Sum_probs=176.7

Q ss_pred             hHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHH
Q 015729           21 PDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWI  100 (401)
Q Consensus        21 ~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~  100 (401)
                      ++.+.+++.+.......+.   ....+++.+++++|.    ++++|+|+++|+..++. .+.+||+|++++|+|+.+.  
T Consensus        22 p~~~~~a~~~~~~~~~~yp---~~~~l~~~ia~~~~~----~I~vt~G~~~al~~~~~-~~~~gd~vlv~~P~y~~~~--   91 (311)
T PRK08354         22 PEWLDEMFERAKEISGRYT---YYEWLEEEFSKLFGE----PIVITAGITEALYLIGI-LALRDRKVIIPRHTYGEYE--   91 (311)
T ss_pred             CHHHHHHHHHHHHHhhcCC---ChHHHHHHHHHHHCC----CEEECCCHHHHHHHHHH-hhCCCCeEEEeCCCcHHHH--
Confidence            4566777765322111111   145789999999973    39999999999988764 4458999999999877654  


Q ss_pred             HHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchH---HHHHHhhhcCCCcEEEEecc
Q 015729          101 DQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS---KVRKLLDEYRHPALFLVDGV  177 (401)
Q Consensus       101 ~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~li~D~a  177 (401)
                      ..++..|++++.++      +|++.+++.++     +++.+++++|+||||.+++.+   +|.++|++  +|+++|+|++
T Consensus        92 ~~~~~~g~~~~~~~------~d~~~l~~~~~-----~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~--~~~~li~De~  158 (311)
T PRK08354         92 RVARFFAARIIKGP------NDPEKLEELVE-----RNSVVFFCNPNNPDGKFYNFKELKPLLDAVED--RNALLILDEA  158 (311)
T ss_pred             HHHHHcCCEEeecC------CCHHHHHHhhc-----CCCEEEEecCCCCCCCccCHHHHHHHHHHhhh--cCcEEEEeCc
Confidence            56788899887653      57889988775     347899999999999999855   56666777  9999999999


Q ss_pred             cccCcceeccCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHH
Q 015729          178 SSICAIDFRMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLL  256 (401)
Q Consensus       178 ~~~~~~~~~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  256 (401)
                      +......-........+++.|.+|.++ .+.++|++++-.   +.+.....                    .++.+....
T Consensus       159 y~~f~~~~~~~~~~~vi~~~S~SK~~~l~GlRiG~~v~~~---~~l~~~~~--------------------~~~~~~~~~  215 (311)
T PRK08354        159 FIDFVKKPESPEGENIIKLRTFTKSYGLPGIRVGYVKGFE---EAFRSVRM--------------------PWSIGSTGY  215 (311)
T ss_pred             chhccccccccCCCcEEEEeccHhhcCCccceeeeeeehH---HHHHHcCC--------------------CccCCHHHH
Confidence            865432111111345688899999995 334569998832   33332110                    111222222


Q ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEc
Q 015729          257 YGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLG  335 (401)
Q Consensus       257 ~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~  335 (401)
                      +++.+.    .+.+.+    +..++.+.+++..+.+ +.....+    ..+ ++++.++   +..++.+.|.++ ||.+.
T Consensus       216 ~~~~~~----~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~----~~~-~~~~~~~---~~~~~~~~l~~~-gv~v~  278 (311)
T PRK08354        216 AFLEFL----IEDDFE----HLRKTMPLIWREKERFEKALYVKS----DAN-FFIKDVG---DAEKFVEFLKRN-GILVR  278 (311)
T ss_pred             HHHHHH----HHhHHH----HHHHHHHHHHHHHHHHHHhcCCCC----CCc-EEEEECC---CHHHHHHHHHHC-CeEEE
Confidence            222222    222222    2222233333333322 1111111    233 3435553   467888888765 99999


Q ss_pred             cCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          336 LGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       336 ~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      +|.....++++||++.   +.++.++++++++++
T Consensus       279 ~g~~f~~~~~iRi~~~---~~~~~~~l~~al~~~  309 (311)
T PRK08354        279 DCTSFGLPGYIRFSVR---DREENEKLIRALREW  309 (311)
T ss_pred             ecccCCCCCeEEEEeC---CHHHHHHHHHHHHHh
Confidence            9965444689999765   456677777777664

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.92  E-value=1.9e-22  Score=190.95  Aligned_cols=286  Identities=13%  Similarity=0.092  Sum_probs=191.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDW  117 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~  117 (401)
                      ......+++++++++.|.+.   .+++++|+.|+..++. ++++||+|+++.+.|.+..  +...++..|++++.++.+ 
T Consensus        52 ~~p~~~~le~~lA~l~g~~~---~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-  126 (390)
T PRK08064         52 GNPTREALEDIIAELEGGTK---GFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMT-  126 (390)
T ss_pred             CChhHHHHHHHHHHHhCCCC---eEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCC-
Confidence            34668899999999999874   3556777889988775 7899999999999877654  456677889999999864 


Q ss_pred             CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEe
Q 015729          118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT  197 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~  197 (401)
                          |++++++.+++    ++++|++++|+||+|.+.|+++|.++|++  +|+++++|++++.+..... .+.++|+++.
T Consensus       127 ----d~~~l~~~l~~----~tklV~l~~p~NptG~~~dl~~I~~la~~--~g~~vvvD~a~~~~~~~~~-~~~g~Divv~  195 (390)
T PRK08064        127 ----NLEEVAQNIKP----NTKLFYVETPSNPLLKVTDIRGVVKLAKA--IGCLTFVDNTFLTPLLQKP-LDLGADVVLH  195 (390)
T ss_pred             ----CHHHHHHhcCC----CceEEEEECCCCCCcEeccHHHHHHHHHH--cCCEEEEECCCCcccccCc-hhhCCcEEEe
Confidence                78999988874    56999999999999999999999999999  9999999999876543222 2467999999


Q ss_pred             cCCCcccCCCc--ceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHH
Q 015729          198 GSQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENV  274 (401)
Q Consensus       198 s~~K~l~g~~g--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~  274 (401)
                      |.||+++|+.+  .|+++++ +++.+++.....                .  +....++..+.   .++.-+.  .+..+
T Consensus       196 S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~----------------~--~g~~~~~~~a~---l~~~gl~--tl~~R  252 (390)
T PRK08064        196 SATKFLAGHSDVLAGLAVVKDEELAQKLYFLQN----------------S--FGAVLGVQDCW---LVLRGLK--TLHVR  252 (390)
T ss_pred             ecceeccCCccceeEEEEeCCHHHHHHHHHHHH----------------h--cCCCCCHHHHH---HHHcccC--cHHHH
Confidence            99999987776  3877776 456555543210                1  01122222111   1222111  25577


Q ss_pred             HHHHHHHHHHHHHHHHHc-CC-ccccC----CC--------ccCCceeEEEEcCCCCCHHHHHHHHHhhCCe---EEccC
Q 015729          275 IERHRRLGKATRLAVEAW-GL-KNCTQ----KE--------EWFSDTVTAVIVPSHINSSEIVRRAWQRYNL---SLGLG  337 (401)
Q Consensus       275 ~~~~~~~~~~l~~~L~~~-g~-~~~~~----~~--------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i---~v~~g  337 (401)
                      .++..+++..+.+.|++. .+ ++..+    .+        ....+.++.|.+ ++  .+++.+.+ ++.++   .++.|
T Consensus       253 ~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~-~~--~~~~~~f~-~~l~l~~~~~s~G  328 (390)
T PRK08064        253 LEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTL-QS--EEAVRQFV-SHVKLPVFAVSLG  328 (390)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEE-CC--HHHHHHHH-HhCCcceEcccCC
Confidence            888888888899998864 21 11111    00        012345888988 33  33444333 44455   44444


Q ss_pred             C------------CC-----------CCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          338 L------------NK-----------VAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       338 ~------------~~-----------~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      .            ++           ..++.+|+|+.-...++.++.+.+++++
T Consensus       329 ~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~  382 (390)
T PRK08064        329 AVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSY  382 (390)
T ss_pred             CCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHh
Confidence            1            00           1245799987764444445554444443

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.92  E-value=2.4e-22  Score=181.98  Aligned_cols=326  Identities=17%  Similarity=0.163  Sum_probs=235.6

Q ss_pred             CCCCCcccccCCC------cCChHHHHHHHccCcCC--CCCc-cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHH
Q 015729            5 YAPGKNHLFVPGP------VHIPDQVIRAMNRNNED--YRSP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWES   75 (401)
Q Consensus         5 ~~~~~~~~~~~~p------~~~~~~v~~a~~~~~~~--~~~~-~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~   75 (401)
                      +.-++-|++..+.      ...+|+++++++++...  |.+. ...+...++.+.|.+..+ . .+.++|++||++|++.
T Consensus        38 D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~~~~~~~~la~~L~~~s~-~-~d~vff~NSGaEA~Ea  115 (404)
T COG4992          38 DQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLFYNEPQAELAEKLVELSP-F-ADRVFFCNSGAEANEA  115 (404)
T ss_pred             CCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHhhCc-c-ccEEEEcCCcHHHHHH
Confidence            4556777775432      56678999999886543  2222 234566788888888876 3 3449999999999999


Q ss_pred             HHhc--cCC--C-CCeEEEEcCCcchHHHHHHHH--------HcC---CcEEEEeCCCCCCCChHHHHHHHhccCCCCce
Q 015729           76 ALTN--TLS--P-GDRIISFLIGQFSLLWIDQQQ--------RLN---FNVDVVESDWGEGAKLDVLASKLAADTAHTIK  139 (401)
Q Consensus        76 ~~~~--~~~--~-gd~vl~~~~~~~~~~~~~~~~--------~~g---~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~  139 (401)
                      ++..  ...  + ..+|+...+++|+..+..+.-        .++   -.++.+|.+     |++++++++++    ++.
T Consensus       116 AiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn-----Di~al~~ai~~----~ta  186 (404)
T COG4992         116 ALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN-----DIEALEAAIDE----DTA  186 (404)
T ss_pred             HHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC-----CHHHHHHHhcc----CeE
Confidence            9833  222  2 347888888888765322111        111   022333333     89999999996    569


Q ss_pred             EEEEEecCCCcccccc----hHHHHHHhhhcCCCcEEEEecccccCcc-----eeccCcccceEEEecCCCcccCCCcce
Q 015729          140 AICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMG  210 (401)
Q Consensus       140 ~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~~K~l~g~~g~G  210 (401)
                      +|++..++...|++.+    ++++.++|++  +|+++|.|+.|.....     .+......+||++..  |.++|+.++|
T Consensus       187 AvivEPIQGEgGV~~~~~~fl~~lr~lCd~--~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~tla--K~LgGG~Pig  262 (404)
T COG4992         187 AVIVEPIQGEGGVIPAPPEFLKALRELCDE--HGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTLA--KALGGGFPIG  262 (404)
T ss_pred             EEEEecccCCCCCCCCCHHHHHHHHHHHHH--hCeEEEEeccccCCCccchHHHHHHhCCCCCEEEee--ccccCCccce
Confidence            9999999999999986    7789999999  9999999999975432     122333447887776  9999998999


Q ss_pred             EEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 015729          211 IVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVE  290 (401)
Q Consensus       211 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~  290 (401)
                      .++.++...+.+.+...                |+  ++.-+++.+++..++++.+.+++   ..++.++..+++.+.|+
T Consensus       263 A~la~~~~~~~~~~G~H----------------gS--TfGGNpLacAv~~a~l~~l~~e~---ll~~v~~~g~~~~~~L~  321 (404)
T COG4992         263 AMLATEEIASAFTPGDH----------------GS--TFGGNPLACAVALAVLEVLLEEG---LLENVREKGEYLLQRLR  321 (404)
T ss_pred             eeEEchhhhhcCCCCcc----------------cC--CCCcCHHHHHHHHHHHHHHcchh---HHHHHHHHHHHHHHHHH
Confidence            99998665555544322                33  34466778888999999988754   77888899999999999


Q ss_pred             Hc--CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          291 AW--GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       291 ~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      ++  .++++..  -...+.++.+++.....+.++.+.|.++ |+.+.+.    .++.+|+.+...++++|++++++++++
T Consensus       322 ~l~~~~~~v~~--vRG~GLmiGiel~~~~~a~~~~~~~~~~-gvL~~~a----~~~ViR~~PpL~i~~eei~~~~~~l~~  394 (404)
T COG4992         322 ELKRRYPLVKE--VRGRGLMIGIELKEPYRARDIVRALREE-GVLVLPA----GPNVIRFLPPLVITEEEIDEALDALER  394 (404)
T ss_pred             HHhhcCCceee--eecceeEEEEEecCcccHHHHHHHHHHC-CeEEecC----CCCeEEecCCccCCHHHHHHHHHHHHH
Confidence            86  4443332  2345678888884433578999999887 8887644    345899998889999999999999999


Q ss_pred             HHHhc
Q 015729          369 ILKDV  373 (401)
Q Consensus       369 ~l~~~  373 (401)
                      +++..
T Consensus       395 ~l~~~  399 (404)
T COG4992         395 ALAAA  399 (404)
T ss_pred             HHHHh
Confidence            99754

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.92  E-value=1.9e-22  Score=190.26  Aligned_cols=289  Identities=16%  Similarity=0.061  Sum_probs=193.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDW  117 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~  117 (401)
                      ......++++.++++.|.+   .+++++|+++|+..++.+++++||+|+++.+.|.+..  +..+....++++..++.  
T Consensus        49 ~~p~~~~le~~lA~l~g~~---~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~--  123 (382)
T TIGR02080        49 GNPTRDLLQQALAELEGGA---GAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ--  123 (382)
T ss_pred             CCchHHHHHHHHHHHhCCC---cEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECC--
Confidence            3456779999999999853   3899999999999999999999999999999877544  33445555677776642  


Q ss_pred             CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEe
Q 015729          118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT  197 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~  197 (401)
                         .|++++++++++    ++++|++++|+||||.+.|+++|.++|++  +|+++++|++++.+..... ...++|++++
T Consensus       124 ---~d~~~l~~ai~~----~tklV~l~~p~NPtG~~~dl~~I~~la~~--~g~~vvvD~a~~~~~~~~p-l~~gaDivv~  193 (382)
T TIGR02080       124 ---GDEQALRAALAQ----KPKLVLIETPSNPLLRVVDIAKICHLAKA--VGAVVVVDNTFLSPALQNP-LALGADLVLH  193 (382)
T ss_pred             ---CCHHHHHHhcCc----CceEEEEECCCCCCCEecCHHHHHHHHHH--cCCEEEEECCCcccccCCc-hhhCCCEEEe
Confidence               379999999874    56999999999999999999999999999  9999999999976643222 2457899999


Q ss_pred             cCCCcccCCCc--ceEEEe-cHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHH
Q 015729          198 GSQKALSLPTG--MGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENV  274 (401)
Q Consensus       198 s~~K~l~g~~g--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~  274 (401)
                      |.+|+++|+.+  .|+++. +++..+++....             .     ++..+.++....   .++..++  -+..+
T Consensus       194 S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~-------------~-----~~g~~~sp~~a~---l~lr~l~--tl~~R  250 (382)
T TIGR02080       194 SCTKYLNGHSDVIAGAVIAKDPQVAEELAWWA-------------N-----NLGVTGGAFDSY---LTLRGLR--TLVAR  250 (382)
T ss_pred             ecceeccCCCCceeEEEEeCCHHHHHHHHHHH-------------H-----ccCCCCCHHHHH---HHHcccc--hHHHH
Confidence            99999987665  487766 455555443210             0     112234443222   2222222  24556


Q ss_pred             HHHHHHHHHHHHHHHHHc-CCc-----cccCCCc--------cCCceeEEEEcCCCCC-HHHHHHHHHhhCCeEEccCCC
Q 015729          275 IERHRRLGKATRLAVEAW-GLK-----NCTQKEE--------WFSDTVTAVIVPSHIN-SSEIVRRAWQRYNLSLGLGLN  339 (401)
Q Consensus       275 ~~~~~~~~~~l~~~L~~~-g~~-----~~~~~~~--------~~~~~~~~~~~~~~~~-~~~l~~~L~~~~~i~v~~g~~  339 (401)
                      +++..+++..+.+.|++. .++     -+...+.        ...+.++.|.++++.. ...+.+.|. -+++.+..|..
T Consensus       251 ~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~-~~~~~~s~G~~  329 (382)
T TIGR02080       251 MRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGEQTVRRFLGGLS-LFTLAESLGGV  329 (382)
T ss_pred             HHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCcHHHHHHHHHcCC-cceEeccCCCC
Confidence            788889999999999874 222     1111100        1245688899843211 123333332 22333333311


Q ss_pred             -----------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          340 -----------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       340 -----------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                                             ...++.+|||+..    ||.+.+++-|+.+|+
T Consensus       330 ~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl----E~~~dl~~dl~~al~  380 (382)
T TIGR02080       330 ESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVGL----EDADDLIADLEQGLR  380 (382)
T ss_pred             cceeECCCccCcccCCHHHHHhcCCCcCeEEEEecc----CCHHHHHHHHHHHHh
Confidence                                   0123569998654    677778888777775

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.92  E-value=1.7e-22  Score=191.34  Aligned_cols=216  Identities=16%  Similarity=0.170  Sum_probs=162.2

Q ss_pred             cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCC
Q 015729           39 AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESD  116 (401)
Q Consensus        39 ~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~  116 (401)
                      .......+++++++++.|.+.   .+++++|++|+..++.+++++||+|+++.+.|.+..  +...+...|++++.++. 
T Consensus        61 ~~~p~~~~le~~lA~l~g~~~---~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~-  136 (398)
T PRK08249         61 NTNPTVQAFEEKVRILEGAEA---ATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCET-  136 (398)
T ss_pred             CCChHHHHHHHHHHHHhCCCe---EEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCC-
Confidence            345668899999999999754   677788899999999889999999999999887654  44456678988887763 


Q ss_pred             CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEE
Q 015729          117 WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVAL  196 (401)
Q Consensus       117 ~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~  196 (401)
                          .|++++++++++    ++++|++++|+||+|.+.|+++|.++|++  +|+++|+|++++.+... .....++|+++
T Consensus       137 ----~d~e~l~~~i~~----~tklV~ie~p~NPtg~v~dl~~I~~la~~--~gi~livD~t~a~~~~~-~~l~~~~Divv  205 (398)
T PRK08249        137 ----GDHEQIEAEIAK----GCDLLYLETPTNPTLKIVDIERLAAAAKK--VGALVVVDNTFATPINQ-NPLALGADLVI  205 (398)
T ss_pred             ----CCHHHHHHhcCC----CCeEEEEECCCCCCCccCCHHHHHHHHHH--cCCEEEEECCcCccccC-CchhhCCCEEe
Confidence                489999999874    56999999999999999999999999999  99999999998855322 12245799999


Q ss_pred             ecCCCcccCCC-c-ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHH
Q 015729          197 TGSQKALSLPT-G-MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENV  274 (401)
Q Consensus       197 ~s~~K~l~g~~-g-~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~  274 (401)
                      +|.+|+++|.. . .|+++.++++.+++...+             .. .|    .+.+...++.+...++.     +...
T Consensus       206 ~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~-------------~~-~g----~~~s~~~a~l~l~~l~t-----L~~R  262 (398)
T PRK08249        206 HSATKFLSGHADALGGVVCGSKELMEQVYHYR-------------EI-NG----ATMDPMSAYLILRGMKT-----LKLR  262 (398)
T ss_pred             ccCceecCCCCCceEEEEECCHHHHHHHHHHH-------------Hh-cC----CCCCHHHHHHHHhCcch-----HHHH
Confidence            99999996543 1 378888887776654321             11 12    23444332322233332     4557


Q ss_pred             HHHHHHHHHHHHHHHHHc
Q 015729          275 IERHRRLGKATRLAVEAW  292 (401)
Q Consensus       275 ~~~~~~~~~~l~~~L~~~  292 (401)
                      .++..++++.+.+.|++.
T Consensus       263 ~~~~~~na~~la~~L~~~  280 (398)
T PRK08249        263 VRQQQESAMALAKYLQTH  280 (398)
T ss_pred             HHHHHHHHHHHHHHHHcC
Confidence            788889999999999874

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.91  E-value=6.7e-22  Score=182.99  Aligned_cols=327  Identities=17%  Similarity=0.156  Sum_probs=206.0

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCC-----------Ccc-HHHHHHHHHHHHHHHhcCCCCceE--EecCChhHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYR-----------SPA-VPALTKTLLEDIKKIFKTTSGTPF--LIPTTGTGAWE   74 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~-----------~~~-~~~~~~~l~~~la~~~g~~~~~~i--~~~~g~t~a~~   74 (401)
                      .+..+.|.=-.+++.|++++.....+.+           +.. ..++..-++++++++||.++..+-  +-+.||+.|+.
T Consensus        21 ~~l~LiaSEN~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~  100 (399)
T PF00464_consen   21 STLNLIASENYMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANL  100 (399)
T ss_dssp             HSEE-CTT-----HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHH
T ss_pred             cCccccCcccccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHH
Confidence            4566778878889999999988443321           112 234444577888999999844332  33678999999


Q ss_pred             HHHhccCCCCCeEEEEcC---CcchHHHHHHH-----HHcCCcEEEEeCC-CCCCCChHHHHHHHhccCCCCceEEEEEe
Q 015729           75 SALTNTLSPGDRIISFLI---GQFSLLWIDQQ-----QRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVH  145 (401)
Q Consensus        75 ~~~~~~~~~gd~vl~~~~---~~~~~~~~~~~-----~~~g~~~~~v~~~-~~~~~d~~~le~~~~~~~~~~~~~i~~~~  145 (401)
                      +++.++++|||+|+..+.   ||.++....-.     .....+.+.++++ ..+.+|.+++++.+.+   .+|++|++..
T Consensus       101 av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~---~kPklIi~G~  177 (399)
T PF00464_consen  101 AVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKE---HKPKLIICGA  177 (399)
T ss_dssp             HHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHH---H--SEEEEE-
T ss_pred             HHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhh---cCCCEEEECc
Confidence            999999999999999987   44443321111     2234467777887 4568999999999987   5789999987


Q ss_pred             cCCCcccccchHHHHHHhhhcCCCcEEEEecccccCc-----ceeccCcccceEEEecCCCcccCCCcceEEEec-----
Q 015729          146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICA-----IDFRMDEWGIDVALTGSQKALSLPTGMGIVCAS-----  215 (401)
Q Consensus       146 ~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~-----~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~-----  215 (401)
                      ..+|  ...|.+++.++|++  .|.+|++|.+|..|.     .+-.+.  .+|++++|.||+|.||.| |++.++     
T Consensus       178 S~y~--~~~d~~~~reIad~--vga~l~~D~sH~~GLIa~g~~~~P~~--~ADvvt~sThKtl~GPrg-giI~~~~~~~~  250 (399)
T PF00464_consen  178 SSYP--RPIDFKRFREIADE--VGAYLMADISHIAGLIAGGLFPNPFP--YADVVTGSTHKTLRGPRG-GIILTNKGSKN  250 (399)
T ss_dssp             SSTS--S---HHHHHHHHHH--TT-EEEEE-TTTHHHHHTTSS--GCC--TSSEEEEESSGGG-SSS--EEEEES-SEEE
T ss_pred             hhcc--CccCHHHHHHHHHh--cCcEEEecccccccceehheecCccc--cceEEEeeccccccccCc-eEEEEcCCccc
Confidence            5544  56789999999999  999999999997553     333343  489999999999998886 999999     


Q ss_pred             ---------HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 015729          216 ---------PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATR  286 (401)
Q Consensus       216 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~  286 (401)
                               +++.+++....              | .|  ..+++....++++..++....+..++...++..+|++.|.
T Consensus       251 ~~~~~~~~~~~l~~~I~~av--------------f-P~--~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La  313 (399)
T PF00464_consen  251 VDKKGKEIDEELAEKIDSAV--------------F-PG--LQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALA  313 (399)
T ss_dssp             E-TTS-EEEHHHHHHHHHHH--------------T-TT--T-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcccccHHHHHHHhcccc--------------C-CC--cccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence                     55555544211              1 11  1334677778888888887665556889999999999999


Q ss_pred             HHHHHcCCccccCCCccCCceeEEEEcC-CCCCHHHHHHHHHhhCCeEEccCCCC-----CCCcEEEEeeccc----CCH
Q 015729          287 LAVEAWGLKNCTQKEEWFSDTVTAVIVP-SHINSSEIVRRAWQRYNLSLGLGLNK-----VAGKVFRIGHLGH----LNE  356 (401)
Q Consensus       287 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~~i~v~~g~~~-----~~~~~~Ri~~~~~----~~~  356 (401)
                      +.|.+.|+++....   .....+++.+. .+++..+..+.|. +.||.+....-+     .....+||++..-    ..+
T Consensus       314 ~~L~~~G~~v~~gg---Td~H~vlvd~~~~~~~g~~a~~~Le-~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~e  389 (399)
T PF00464_consen  314 EALQERGFKVVTGG---TDNHQVLVDLRSFGIDGKEAEKALE-EAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRRGMKE  389 (399)
T ss_dssp             HHHHHTT-EEGGGS----SSSEEEEEGGGGTS-HHHHHHHHH-HTTEE-EEE--TTTSTTTT-SEEEEESHHHHHTT--H
T ss_pred             HHHhhCCcEEEECC---CCCCeEEEEecccccchHHHHHHHH-hcCeeecccccCCCCCCCCCCEEEECCHHHHhCCCCH
Confidence            99999999998632   34557777873 3567778877775 559998643221     2235699997552    246


Q ss_pred             HHHHHHHHHH
Q 015729          357 LQLLGCLAGV  366 (401)
Q Consensus       357 ~di~~~~~~i  366 (401)
                      +|++++.+.|
T Consensus       390 ~dm~~iA~~I  399 (399)
T PF00464_consen  390 EDMKEIAELI  399 (399)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhC
Confidence            7777766543

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.91  E-value=1.2e-21  Score=200.85  Aligned_cols=344  Identities=13%  Similarity=0.055  Sum_probs=226.3

Q ss_pred             ccccCCCcCChHHHHHHHccCcCC---C-CCc-----cHHHHHHHHHHHHHHHhcCCCCceEEe-cCChhHHHHHHH---
Q 015729           11 HLFVPGPVHIPDQVIRAMNRNNED---Y-RSP-----AVPALTKTLLEDIKKIFKTTSGTPFLI-PTTGTGAWESAL---   77 (401)
Q Consensus        11 ~~~~~~p~~~~~~v~~a~~~~~~~---~-~~~-----~~~~~~~~l~~~la~~~g~~~~~~i~~-~~g~t~a~~~~~---   77 (401)
                      +.++.+.....+.+.+.+......   | ..+     +..+.+.++++.+++++|.+.   +.+ .++|++|....+   
T Consensus       502 i~lGsct~~~~p~~~~~~~~~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~eltG~d~---~sl~~~~ga~ge~agL~a~  578 (954)
T PRK05367        502 IPLGSCTMKLNAAAEMIPITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAEITGYDA---VSLQPNAGAQGEYAGLLAI  578 (954)
T ss_pred             eeCCcCCCcCCHHHHHHHHhCccccccCCCChHHHHHHHHHHHHHHHHHHHHHHCCCC---EEECccHHHHHHHHHHHHH
Confidence            445567777788777777664322   1 122     144668899999999999985   444 445556553333   


Q ss_pred             hcc-CCCCC----eEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccc
Q 015729           78 TNT-LSPGD----RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV  152 (401)
Q Consensus        78 ~~~-~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~  152 (401)
                      +.. .++|+    +|++++..|.++.  ..+...|++++.++++.++.+|+++|+++++++. .++.+|+++++++..+.
T Consensus       579 r~~~~~~G~~~r~~vlis~~aH~snp--~sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~~~~-~~la~V~it~pst~G~~  655 (954)
T PRK05367        579 RAYHESRGEGHRDVCLIPSSAHGTNP--ASAVMAGMKVVVVACDENGNIDLDDLRAKAEEHA-DNLAAIMITYPSTHGVF  655 (954)
T ss_pred             HHHhhccCCCCCCEEEEEchhhhhhH--HHHHHCCCEEEEECCCCCCCcCHHHHHHHHhccC-CCeEEEEEEcCCCCeee
Confidence            222 24555    5888888887764  3467789999999998888999999999997632 35788888887766333


Q ss_pred             ccchHHHHHHhhhcCCCcEEEEecccccCccee-ccCcccceEEEecCCCcccC-----CCcceEEEecHHHHHHhccCC
Q 015729          153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF-RMDEWGIDVALTGSQKALSL-----PTGMGIVCASPKALEASKTAK  226 (401)
Q Consensus       153 ~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~di~~~s~~K~l~g-----~~g~G~l~~~~~~~~~~~~~~  226 (401)
                      ..|+++|.++|++  +|+++++|+++..+...+ .....|+|++++|+||||+.     ++|+|++++++.+...+....
T Consensus       656 e~~I~eI~~i~h~--~G~~v~VDgA~~~al~~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~  733 (954)
T PRK05367        656 EETIREICEIVHE--HGGQVYLDGANMNAQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHP  733 (954)
T ss_pred             cCCHHHHHHHHHH--cCCEEEEECcChhhccCCCChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCc
Confidence            4789999999999  999999999997553333 33467899999999999854     455779999876554444332


Q ss_pred             CCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHH---HHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 015729          227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL---IFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE  302 (401)
Q Consensus       227 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~  302 (401)
                      ....         ....+..+..+.+..+...+..+..+   +-.+|+++..++...+++++.+.|.+. .+.+..+...
T Consensus       734 v~~~---------~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~  804 (954)
T PRK05367        734 VQIA---------GGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDHYPVLYTGANGR  804 (954)
T ss_pred             cCcC---------CCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCC
Confidence            1100         00001101111222121222223333   334557777777789999999999873 3332222111


Q ss_pred             cCCceeEEE-EcCC--CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          303 WFSDTVTAV-IVPS--HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       303 ~~~~~~~~~-~~~~--~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .....++.+ .++.  +++..++.++|.+ +|+.......+ ..+.++|++....+++|+|+++++++.+.+++
T Consensus       805 ~~~e~i~~~~~~~~~~g~~~~di~krL~d-~G~~~~t~~~p-v~~~l~i~ptE~~s~~elDr~~~al~~i~~e~  876 (954)
T PRK05367        805 VAHECILDLRPLKESTGITVDDIAKRLID-YGFHAPTMSFP-VAGTLMVEPTESESKAELDRFCDAMIAIRAEI  876 (954)
T ss_pred             cccceEEEeecccccCCCCHHHHHHHHHH-CCCeEeecCCc-cCCEEEEEeeecCCHHHHHHHHHHHHHHHHHH
Confidence            122223333 2222  4677899999965 48876543333 35679999998999999999999999887765

>PRK06460 hypothetical protein; Provisional

Probab=99.91  E-value=3.3e-22  Score=188.43  Aligned_cols=292  Identities=13%  Similarity=0.098  Sum_probs=190.4

Q ss_pred             cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCC
Q 015729           39 AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESD  116 (401)
Q Consensus        39 ~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~  116 (401)
                      .......++++++++++|.+.   .+++++|++|+..++.+++++||+|+++.+.+.+.+  +...++..|++++.++.+
T Consensus        42 ~~~p~~~~L~~~lA~l~g~~~---~v~~~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~  118 (376)
T PRK06460         42 EANPTVLELTKKIVELENAEM---GVAFSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPG  118 (376)
T ss_pred             CCCccHHHHHHHHHHHhCCCc---EEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCC
Confidence            344668899999999999865   234466789999998899999999999877554332  446678889998888754


Q ss_pred             CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEE
Q 015729          117 WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVAL  196 (401)
Q Consensus       117 ~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~  196 (401)
                           +.+.+++.++    ++++++++++|+||+|.+.|+++|.++|++  +|+++|+|++++.+.. ......++|+++
T Consensus       119 -----~~~~l~~~~~----~~tklV~l~sp~NPtG~v~d~~~I~~la~~--~g~~vivDea~~~~~~-~~~l~~~~divv  186 (376)
T PRK06460        119 -----SDNIIEKAKS----KRYDVVFVENITNPLLRVVDITELSKVCKE--NGSILIVDATFSTPIN-QKPLELGADIVV  186 (376)
T ss_pred             -----CHHHHHHhcC----CCceEEEEECCCCCCCcccCHHHHHHHHHH--cCCEEEEECCcCcccc-CChhhcCCCEEE
Confidence                 2344555443    467999999999999999999999999999  9999999999876422 122234689999


Q ss_pred             ecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHH
Q 015729          197 TGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENV  274 (401)
Q Consensus       197 ~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~  274 (401)
                      .|.+|+++|..+  .|+++.++++.+++....            ..+  |    .+.+..   .+..+++..  ..++..
T Consensus       187 ~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~------------~~~--g----~~~~~~---~a~~~l~~~--~~l~~r  243 (376)
T PRK06460        187 HSASKFLAGHNDVIAGLAAGYGKLLNVIDQMR------------RTL--G----TSLDPH---AAYLTLRGI--KTLKIR  243 (376)
T ss_pred             eecceeccCCCCceEEEEecCHHHHHHHHHHH------------Hhc--C----CCCCHH---HHHHHHhch--hhHHHH
Confidence            999999975432  589999888776664321            001  1    123332   122222211  125667


Q ss_pred             HHHHHHHHHHHHHHHHHc-CCc-cc----cCCCc--------cCCceeEEEEcCCC-CCHHHHHHHHHhhCCeEEccCCC
Q 015729          275 IERHRRLGKATRLAVEAW-GLK-NC----TQKEE--------WFSDTVTAVIVPSH-INSSEIVRRAWQRYNLSLGLGLN  339 (401)
Q Consensus       275 ~~~~~~~~~~l~~~L~~~-g~~-~~----~~~~~--------~~~~~~~~~~~~~~-~~~~~l~~~L~~~~~i~v~~g~~  339 (401)
                      +++..++++++.+.|++. .+. +.    ...+.        ...+.++.|++..+ ..+.++.+.|. -+.+.+..|..
T Consensus       244 ~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~l~-~~~~~~s~Gg~  322 (376)
T PRK06460        244 MDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSLK-LIIPAQTLGGV  322 (376)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHHHHHhCC-cceeccCCCCC
Confidence            888899999999999874 321 11    11110        12456888998432 11223333331 11122222200


Q ss_pred             -----------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          340 -----------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       340 -----------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                                             ...++.+|+|+..    ||.|.+++.|+.+|+.+
T Consensus       323 ~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~~  375 (376)
T PRK06460        323 NSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGI----EDVNDLIEDLDRALSTL  375 (376)
T ss_pred             ceEEeCccccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHhh
Confidence                                   0124569998654    67788888888777643

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.91  E-value=2.7e-22  Score=189.67  Aligned_cols=214  Identities=17%  Similarity=0.168  Sum_probs=160.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      .....++++.+++++|.+.   +++++||++|+..++.+++++||+|+++.+.|.+..  +...+...|++++.++.+  
T Consensus        53 ~p~~~~le~~la~l~g~~~---~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~--  127 (380)
T TIGR01325        53 NPTVAAFEERIAALEGAER---AVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPT--  127 (380)
T ss_pred             CchHHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCC--
Confidence            4557899999999999854   678999999999999888999999999887665543  445677789999988764  


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                         |++++++++++    ++++|++++|+||+|.+.|+++|.++|++  +|+++|+|++++.+.... ....++|++++|
T Consensus       128 ---d~~~l~~~i~~----~tklV~le~p~np~g~~~dl~~I~~la~~--~gi~livD~a~~~~~~~~-pl~~g~Divv~S  197 (380)
T TIGR01325       128 ---DLNAWEAAVKP----NTKLVFVETPSNPLGELVDIAALAELAHA--IGALLVVDNVFATPVLQQ-PLKLGADVVVYS  197 (380)
T ss_pred             ---CHHHHHHhcCC----CceEEEEECCCCCCCeeeCHHHHHHHHHH--cCCEEEEECCCcccccCC-chhhCCCEEEee
Confidence               78999988863    56999999999999999999999999999  999999999987543222 224578999999


Q ss_pred             CCCcccCCC-cc-eEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHH
Q 015729          199 SQKALSLPT-GM-GIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE  276 (401)
Q Consensus       199 ~~K~l~g~~-g~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~  276 (401)
                      .+|+++|+. .+ |+++.+++..+.+....            .  ..|    .+.+...++.+...++     .+....+
T Consensus       198 ~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~------------~--~~g----~~~~p~~a~~~l~~l~-----tl~~r~~  254 (380)
T TIGR01325       198 ATKHIDGQGRVMGGVIAGSEELMAEVAVYL------------R--HTG----PAMSPFNAWVLLKGLE-----TLSLRMQ  254 (380)
T ss_pred             ccceecCCCCeEEEEEEeCHHHHHHHHHHH------------H--hhC----CCCCHHHHHHHHhccC-----cHHHHHH
Confidence            999997542 23 78888888766554210            0  012    1234332222222222     2455778


Q ss_pred             HHHHHHHHHHHHHHHc
Q 015729          277 RHRRLGKATRLAVEAW  292 (401)
Q Consensus       277 ~~~~~~~~l~~~L~~~  292 (401)
                      +..++++.+.+.|++.
T Consensus       255 ~~~~~a~~la~~L~~~  270 (380)
T TIGR01325       255 KQFDSALAIAEWLQAQ  270 (380)
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            8888999999999875

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.91  E-value=3.8e-22  Score=176.87  Aligned_cols=336  Identities=15%  Similarity=0.134  Sum_probs=247.4

Q ss_pred             CCCcccccCCCcCChHHHHHHHccCcCCCCCc----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC-
Q 015729            7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSP----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-   81 (401)
Q Consensus         7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~----~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~-   81 (401)
                      |.+-||--.....+.+++.+.+.+++..-.+.    +....-.+|++.++++-..+.   .++.+++--|+...+..+. 
T Consensus       177 CSNDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~a---ALlFsSCfVANDstLftLak  253 (570)
T KOG1360|consen  177 CSNDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEA---ALLFSSCFVANDSTLFTLAK  253 (570)
T ss_pred             ecCccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcc---eeeeeeeeeccchHHHHHHH
Confidence            45677777777777778888887765432221    122334589999999887766   4555667778877776543 


Q ss_pred             -CCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHH
Q 015729           82 -SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVR  160 (401)
Q Consensus        82 -~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~  160 (401)
                       -||-.|+. +.+.+... ..-.+..+++-.....+     |++.|++++.+.+-..||+|.+..+++++|.+.|+++|.
T Consensus       254 ~lpgcei~S-D~gNHASM-I~GIrns~v~K~IFrHN-----D~~hL~~lL~~~~~svPKivAFEtVhSM~Gavcpleelc  326 (570)
T KOG1360|consen  254 KLPGCEIFS-DEGNHASM-IQGIRNSRVPKHIFRHN-----DLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELC  326 (570)
T ss_pred             HCCCcEEec-cccchHHH-HHHhhhcCCcceeeccC-----CHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHH
Confidence             36655544 44444333 23345455544434433     899999999876656799999999999999999999999


Q ss_pred             HHhhhcCCCcEEEEecccccCccee--------ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCcccc
Q 015729          161 KLLDEYRHPALFLVDGVSSICAIDF--------RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF  232 (401)
Q Consensus       161 ~l~~~~~~~~~li~D~a~~~~~~~~--------~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~  232 (401)
                      +++++  ||.+..+|++|+.|..-.        |.--..+||+.++..|.|+ --| |++..+..+++-++...      
T Consensus       327 Dvah~--yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafG-cVG-GYIAat~~LvDmiRSyA------  396 (570)
T KOG1360|consen  327 DVAHK--YGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFG-CVG-GYIAATRKLVDMIRSYA------  396 (570)
T ss_pred             HHHHH--hCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhcc-ccc-ceehhhhhHHHHHHHhc------
Confidence            99999  999999999998663211        1111247999999999985 444 89999999988776543      


Q ss_pred             chHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEE
Q 015729          233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVI  312 (401)
Q Consensus       233 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~  312 (401)
                                .|.-|..+.|+.-++++.++++++..++-...+++.+++..++++.|.++|+++....    + .++.+.
T Consensus       397 ----------aGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~GiPVi~~p----S-HIiPv~  461 (570)
T KOG1360|consen  397 ----------AGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELGIPVIPNP----S-HIIPVR  461 (570)
T ss_pred             ----------CceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCcccCCC----c-ceeeee
Confidence                      3433455677777888899999888654467888889999999999999999998742    2 466677


Q ss_pred             cCCCCCHHHHHHHHHhhCCeEEccCCCC---CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCCCC
Q 015729          313 VPSHINSSEIVRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPV  377 (401)
Q Consensus       313 ~~~~~~~~~l~~~L~~~~~i~v~~g~~~---~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~~~  377 (401)
                      +.+..-+.+++..|.++++|+|...-++   .....+||.+...+|.+-++.+++.+..+.++++++.
T Consensus       462 vgda~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v~l~~  529 (570)
T KOG1360|consen  462 VGDAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEVGLPR  529 (570)
T ss_pred             ccCHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHcCCcc
Confidence            7555556789999999999999866332   1234599999999999999999999999999998864

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.91  E-value=8e-22  Score=175.71  Aligned_cols=300  Identities=14%  Similarity=0.119  Sum_probs=207.5

Q ss_pred             HHHHHHHHHHHhc----CC---CCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCC
Q 015729           44 TKTLLEDIKKIFK----TT---SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD  116 (401)
Q Consensus        44 ~~~l~~~la~~~g----~~---~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~  116 (401)
                      ..++++.+|+++.    ..   +++.+++++|+|.|++.++..+..|||..++++|.|++.. ..+.-+.|++++.|.+.
T Consensus       123 l~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfd-rdl~~rTgveivpv~c~  201 (471)
T KOG0256|consen  123 LPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFD-RDLRWRTGVEIVPVHCS  201 (471)
T ss_pred             chHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCccc-ccceeccCceEEEEEee
Confidence            4467777776664    22   4566999999999999999899999999999999666543 45667789999999886


Q ss_pred             CC--CCCChHHHHHHHhc--cCCCCceEEEEEecCCCcccccchHH---HHHHhhhcCCCcEEEEecccccCccee----
Q 015729          117 WG--EGAKLDVLASKLAA--DTAHTIKAICIVHNETATGVTNNLSK---VRKLLDEYRHPALFLVDGVSSICAIDF----  185 (401)
Q Consensus       117 ~~--~~~d~~~le~~~~~--~~~~~~~~i~~~~~~n~tG~~~~l~~---i~~l~~~~~~~~~li~D~a~~~~~~~~----  185 (401)
                      ..  .+++.+++|.++.+  ..+.+++.+++++|+||.|.+++-++   +..++.+  +|+.+|+|+.++.-.+..    
T Consensus       202 Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~--kniHvI~DEIya~sVF~~~~F~  279 (471)
T KOG0256|consen  202 SSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASR--KNIHVISDEIYAGSVFDKSEFR  279 (471)
T ss_pred             cCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhh--cceEEEeehhhcccccCccCce
Confidence            64  36789999888764  22357999999999999999997554   5666677  999999999987433211    


Q ss_pred             -------ccC-cccceEEEecCCCcccCCCcc--eEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHH
Q 015729          186 -------RMD-EWGIDVALTGSQKALSLPTGM--GIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQL  255 (401)
Q Consensus       186 -------~~~-~~~~di~~~s~~K~l~g~~g~--G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  255 (401)
                             +.. .....-++.|.+|=| |.+|.  |+++...+-........                 + +++. .+...
T Consensus       280 Sv~ev~~~~~~~~~rvHivyslSKD~-GlpGfRvGviYS~ne~VvsaA~km-----------------s-sf~~-vSs~t  339 (471)
T KOG0256|consen  280 SVLEVRKDPHLDPDRVHIVYSLSKDF-GLPGFRVGVIYSNNEDVVSAATKM-----------------S-SFGL-VSSQT  339 (471)
T ss_pred             EHHHHhhccccCCCcEEEEEEecccc-CCCceEEEEEEecChHHHHHHHHH-----------------h-hccC-CcHHH
Confidence                   111 112334678889988 57665  99997765533322110                 0 1111 22221


Q ss_pred             HHHHHHHH--HHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC---C--CC-HHHHHHHHH
Q 015729          256 LYGLRAAL--DLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS---H--IN-SSEIVRRAW  327 (401)
Q Consensus       256 ~~a~~~al--~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~---~--~~-~~~l~~~L~  327 (401)
                      ..-+...|  +.+.+.-+....+|++...+++.+.|+++|++....    .++.++|+.+..   .  .+ .-++.+++.
T Consensus       340 Q~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~lgI~cl~s----~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~  415 (471)
T KOG0256|consen  340 QYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKALGIPCLKS----NAGLFCWVDLRKLLTSLTFEGELELWERIL  415 (471)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCceeec----CCeeEEEEEhHHhcCcCChHHHHHHHHHHH
Confidence            11111111  233333356677788888889999999999999875    467788888631   1  11 225666777


Q ss_pred             hhCCeEEccCCC--CCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          328 QRYNLSLGLGLN--KVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       328 ~~~~i~v~~g~~--~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      ++-++.+.||..  +...+|+|+++ +...++.++-++++|+..+.
T Consensus       416 ~~vklnlSpG~s~~C~EpGWFRvcF-An~~~~t~~~am~Ri~~~~~  460 (471)
T KOG0256|consen  416 DNVKLNLSPGSSCHCHEPGWFRVCF-ANMSEETLEVAMRRLKQFLD  460 (471)
T ss_pred             HhhccccCCCCcceecCCCeEEEEe-ccCCHHHHHHHHHHHHHHHH
Confidence            766899999944  66789999955 44667777779999998886

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.91  E-value=9.2e-22  Score=188.26  Aligned_cols=311  Identities=15%  Similarity=0.137  Sum_probs=203.6

Q ss_pred             hHHHHHHHccCcCC--CC-CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCC-------CeEEEE
Q 015729           21 PDQVIRAMNRNNED--YR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG-------DRIISF   90 (401)
Q Consensus        21 ~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~g-------d~vl~~   90 (401)
                      ++.+.+++.+....  +. .....+...++.+.++++.+.   +.+++++||++|++.++......+       ++|++.
T Consensus        57 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~---~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~  133 (396)
T PRK02627         57 HPKLVEAIQEQAAKLIHTSNLYYIEPQEELAEKLVELSGM---DKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITA  133 (396)
T ss_pred             CHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhcCC---CEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEE
Confidence            35666666553321  11 112345667888888888655   349999999999999987543222       679999


Q ss_pred             cCCcchHHHHHHHHHcCCcEE---EEeCCCCC----CCChHHHHHHHhccCCCCceEEEEEecCCCccc-ccc---hHHH
Q 015729           91 LIGQFSLLWIDQQQRLNFNVD---VVESDWGE----GAKLDVLASKLAADTAHTIKAICIVHNETATGV-TNN---LSKV  159 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~---~v~~~~~~----~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~-~~~---l~~i  159 (401)
                      .+++++........ .+....   ..+...+.    ..|++++++++.    ++++++++++++|++|. .++   +++|
T Consensus       134 ~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~----~~~~~vii~p~~~~~G~~~~~~~~l~~l  208 (396)
T PRK02627        134 ENSFHGRTLATLSA-TGQPKYQEGFEPLVEGFIYVPFNDIEALKAAIT----DKTAAVMLEPIQGEGGVNPADKEYLQAL  208 (396)
T ss_pred             CCCcCcccHHHHHh-cCCccccccCCCCCCCceEeCCCCHHHHHHhcC----CCeEEEEEecccCCCCCccCCHHHHHHH
Confidence            98888665322221 121111   11111110    118899999885    46799999999999994 443   7889


Q ss_pred             HHHhhhcCCCcEEEEecccccCcc-----eeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccch
Q 015729          160 RKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW  234 (401)
Q Consensus       160 ~~l~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~  234 (401)
                      .++|++  +|+++|+|++++....     .++.....+|++++  +|.++++.++|++++++++.+.+.....       
T Consensus       209 ~~l~~~--~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t~--sK~~~~G~rig~~~~~~~~~~~~~~~~~-------  277 (396)
T PRK02627        209 RELCDE--NGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMTL--AKGLGGGVPIGAVLAKEKVADVFTPGDH-------  277 (396)
T ss_pred             HHHHHH--cCCEEEEechhcCCCccCceeeehhcCCCCCEEEE--cchhhCCcccEEEEEcHHHHhccCCCCC-------
Confidence            999999  9999999999873211     11122223566654  5999766678999999988776643211       


Q ss_pred             HHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEE
Q 015729          235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVI  312 (401)
Q Consensus       235 ~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~  312 (401)
                                 ...++.+...++++.++++.+...   +..++.+++.+.+++.|.++  .+.......  ..+.++++.
T Consensus       278 -----------~~t~~~~~~~~~aa~~~l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~g~~~~i~  341 (396)
T PRK02627        278 -----------GSTFGGNPLACAAALAVIEIIEEE---GLLENAAEVGEYLRAKLRELLEKYPGIKEVR--GLGLMIGIE  341 (396)
T ss_pred             -----------CCCCCCCHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHhCCCeeeec--cCcEEEEEE
Confidence                       112345666677777788766553   34566667777777777664  222221111  234567777


Q ss_pred             cCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          313 VPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       313 ~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ++  .+..++.+.|.++ ||.+.++.    .+++|+++...++++++++++++|+++++++
T Consensus       342 ~~--~~~~~~~~~l~~~-Gv~v~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~~  395 (396)
T PRK02627        342 LD--RPAAEIVKKALEK-GLLINVTG----DNVLRLLPPLIISKEEIDEAVDRLEEVLKEL  395 (396)
T ss_pred             ec--CcHHHHHHHHHHC-CeEEeecC----CCEEEEECCcccCHHHHHHHHHHHHHHHHhh
Confidence            73  2578899999877 99998752    3679998776789999999999999998754

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.91  E-value=9.9e-22  Score=200.44  Aligned_cols=315  Identities=13%  Similarity=0.103  Sum_probs=230.2

Q ss_pred             CcCChHHHHHHHccCcCCC--C---Ccc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCC--
Q 015729           17 PVHIPDQVIRAMNRNNEDY--R---SPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPG--   84 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~--~---~~~----~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~g--   84 (401)
                      +..+|+.+++++.......  +   .++    ..+.+.+++.++++++|.+..+ +.++.++|++.++++.+. +++|  
T Consensus       114 ~~~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~an-aSL~d~aTAaaea~~~a~~~~~g~~  192 (993)
T PLN02414        114 NTHVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSN-ASLLDEGTAAAEAMAMCNNILKGKK  192 (993)
T ss_pred             CccCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhh-EeecCChHHHHHHHHHHHhcccCCC
Confidence            3447788878888855321  1   111    2344779999999999998755 899999999999877553 4544  


Q ss_pred             CeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHH
Q 015729           85 DRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKL  162 (401)
Q Consensus        85 d~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l  162 (401)
                      |+|++++..|+++.  +...++..|++++.++.+..   +      ...    +.+ +.++++..|.+|.+.|+++|.++
T Consensus       193 ~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~---~------~~~----~~v-~~vlvq~P~~~G~v~dv~~I~~~  258 (993)
T PLN02414        193 KKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF---D------YSS----GDV-CGVLVQYPATDGEVLDYAEFVKN  258 (993)
T ss_pred             CEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh---c------ccc----Cce-EEEEEecCCCCeEEcCHHHHHHH
Confidence            78999999988876  66777889999999986431   1      011    122 33456667789999999999999


Q ss_pred             hhhcCCCcEEEEecccccCccee-ccCcccceEEEecCCCcccCCCc-----ceEEEecHHHHHHhccCCCC--------
Q 015729          163 LDEYRHPALFLVDGVSSICAIDF-RMDEWGIDVALTGSQKALSLPTG-----MGIVCASPKALEASKTAKSV--------  228 (401)
Q Consensus       163 ~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~di~~~s~~K~l~g~~g-----~G~l~~~~~~~~~~~~~~~~--------  228 (401)
                      |++  +|+++++ +++..+...+ +..++|+|++++++|||+ +|.|     .|++++++++.+.++.....        
T Consensus       259 ah~--~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg-~P~G~GGP~aGflavr~~~~r~~PgriVG~s~d~~g~  334 (993)
T PLN02414        259 AHA--NGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFG-VPMGYGGPHAAFLATSQEYKRLMPGRIIGVSVDSSGK  334 (993)
T ss_pred             HHH--cCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccc-cCCCCCCCCeeEEEECHHHHhhCCCcccCcccCCCCC
Confidence            999  9999999 7777665555 477889999999999987 3333     79999999987765532221        


Q ss_pred             cc---ccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHH-----HHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCC
Q 015729          229 RV---FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI-----FEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK  300 (401)
Q Consensus       229 ~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~-----~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  300 (401)
                      ..   ..+...+..+++.++     +++....++.+++...     ...|++++.++..+++.++++.|.+.|+++..+ 
T Consensus       335 ~~~~l~LqtReqhiRrEkaT-----sNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~~~~~-  408 (993)
T PLN02414        335 PALRMAMQTREQHIRRDKAT-----SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLGFQVQSL-  408 (993)
T ss_pred             cccccccccccchhhhcccc-----cchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcCCccCCC-
Confidence            00   122345556778776     7775555666666433     347899999999999999999998889887543 


Q ss_pred             CccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHH
Q 015729          301 EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVE  367 (401)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~  367 (401)
                       . ... .+.|.++   +..++.++|.++ ||.++...    ++.+|+|+..++|++|||.+++++.
T Consensus       409 -~-~f~-~vt~~~~---~~~~v~~~L~~~-gI~l~~~~----~~~lrvs~~e~~T~edId~L~~~l~  464 (993)
T PLN02414        409 -P-FFD-TVKVKCS---DADAIADAAAKV-GINLRVVD----ANTVTVSFDETTTLEDVDKLFKVFA  464 (993)
T ss_pred             -C-CcC-eEEEecC---CHHHHHHHHHHC-CCeeEEec----CCeEEEEeeccCCHHHHHHHHHHHc
Confidence             2 233 4556664   457888999876 98766432    4579999999999999999999996

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.91  E-value=2.7e-22  Score=189.37  Aligned_cols=287  Identities=17%  Similarity=0.111  Sum_probs=191.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH-HHHHHHHcCCcEEEEeCCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGE  119 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~  119 (401)
                      .....++++.+++++|.+.   +++++||+.|+..++.+++++||+|+++.+.|.+.. +.......|++++.+.     
T Consensus        52 np~~~~lE~~lA~l~g~~~---~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~-----  123 (385)
T PRK08574         52 NPTLRPLEEALAKLEGGVD---ALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY-----  123 (385)
T ss_pred             CccHHHHHHHHHHHhCCCc---EEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC-----
Confidence            3557799999999999764   677889999999999889999999999999887765 2222356788877663     


Q ss_pred             CCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecC
Q 015729          120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS  199 (401)
Q Consensus       120 ~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~  199 (401)
                       +|++++++++++   .++++|++++++||+|.+.|+++|.++|++  +|+++|+|++++.+... .....|+|++++|.
T Consensus       124 -~d~~~l~~~i~~---~~tklV~ie~p~NPtG~v~dl~~I~~la~~--~gi~livD~t~a~~~~~-~~l~~GaDivv~S~  196 (385)
T PRK08574        124 -PSTEDIIEAIKE---GRTKLVFIETMTNPTLKVIDVPEVAKAAKE--LGAILVVDNTFATPLLY-RPLRHGADFVVHSL  196 (385)
T ss_pred             -CCHHHHHHhcCc---cCceEEEEECCCCCCCEecCHHHHHHHHHH--cCCEEEEECCCCccccC-ChhhhCCcEEEeeC
Confidence             368899998874   257999999999999999999999999999  99999999999876432 22346899999999


Q ss_pred             CCcccCCCc--ceEEEe-cHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHH
Q 015729          200 QKALSLPTG--MGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE  276 (401)
Q Consensus       200 ~K~l~g~~g--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~  276 (401)
                      +|+++|+..  .|++++ ++++.+++...             ... .|    ...++...+.+..+++     -+..+.+
T Consensus       197 sK~l~g~~d~~gG~vi~~~~~~~~~~~~~-------------~~~-~g----~~~~p~~a~l~l~~l~-----tL~~R~~  253 (385)
T PRK08574        197 TKYIAGHNDVVGGVAVAWSGEFLEELWEW-------------RRR-LG----TIMQPFEAYLVLRGLK-----TLEVRFE  253 (385)
T ss_pred             ceeecCCCCceeEEEEECcHHHHHHHHHH-------------HHh-cC----CCCCHHHHHHHHcccC-----cHHHHHH
Confidence            999976532  264544 56655554321             110 12    1344432222222222     2556778


Q ss_pred             HHHHHHHHHHHHHHHc-CCc-cccC----CCc----------cCCceeEEEEcCCCCCHHHHHHHHHhhCCe---EEccC
Q 015729          277 RHRRLGKATRLAVEAW-GLK-NCTQ----KEE----------WFSDTVTAVIVPSHINSSEIVRRAWQRYNL---SLGLG  337 (401)
Q Consensus       277 ~~~~~~~~l~~~L~~~-g~~-~~~~----~~~----------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i---~v~~g  337 (401)
                      +..++++.+.+.|++. .+. +..+    .+.          ...+.++.|++. + +.++. ..+.++-.+   .+..|
T Consensus       254 ~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~-~-~~~~~-~~~~~~l~l~~~~~s~G  330 (385)
T PRK08574        254 RQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVK-G-GRDAV-LKFLRSLKLIKPSPSLG  330 (385)
T ss_pred             HHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeC-C-CHHHH-HHHHHcCCcceEccCCC
Confidence            8888999999999874 332 1111    100          124568889884 3 22332 223332222   22222


Q ss_pred             CC-----------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          338 LN-----------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       338 ~~-----------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      ..                       ....+.+|||+..    ||.+.+++-|+++|+.
T Consensus       331 ~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dli~dl~~al~~  384 (385)
T PRK08574        331 GVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVGL----EDVEDLIEDLDQALGS  384 (385)
T ss_pred             CCcceeeCCCcCCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHhc
Confidence            11                       0113569998654    6777788777777754

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.91  E-value=1.1e-21  Score=186.04  Aligned_cols=214  Identities=15%  Similarity=0.122  Sum_probs=161.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      .....++++.++++.|.+.   .+++++|+.|+..++.+++++||+|+++...|.+.+  +...++..|++++.++.+  
T Consensus        69 ~p~~~~le~~lA~l~g~~~---al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~--  143 (403)
T PRK07810         69 NPTVSMFEERLRLIEGAEA---CFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGE--  143 (403)
T ss_pred             CchHHHHHHHHHHHhCCCc---EEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCC--
Confidence            3457799999999999764   788899999999998888999999999886554443  445677789999998743  


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                         |++++++++++    ++++|++++|+||+|.+.|+++|.++|++  +|+++|+|++++.+.... ....++|++++|
T Consensus       144 ---d~~~l~~ai~~----~tklV~~esp~Nptg~v~dl~~I~~la~~--~g~~vivD~a~a~~~~~~-~~~~gaDivv~S  213 (403)
T PRK07810        144 ---DLSQWEEALSV----PTQAVFFETPSNPMQSLVDIAAVSELAHA--AGAKVVLDNVFATPLLQR-GLPLGADVVVYS  213 (403)
T ss_pred             ---CHHHHHHhcCc----CceEEEEECCCCCCCeecCHHHHHHHHHH--cCCEEEEECCCCccccCC-hhhcCCcEEEcc
Confidence               89999999874    56999999999999999999999999999  999999999998765422 234689999999


Q ss_pred             CCCcccCCCc--ceEEEecHHHHHH-hccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHH
Q 015729          199 SQKALSLPTG--MGIVCASPKALEA-SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI  275 (401)
Q Consensus       199 ~~K~l~g~~g--~G~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  275 (401)
                      .+|+++|...  .|+++.+++.+.. +...            ..  ..|    ...+...++.+..+++     -+..+.
T Consensus       214 ~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~------------~~--~~g----~~~s~~~a~l~l~~L~-----tl~~R~  270 (403)
T PRK07810        214 GTKHIDGQGRVLGGAILGDREYIDGPVQKL------------MR--HTG----PALSAFNAWVLLKGLE-----TLALRV  270 (403)
T ss_pred             CCceecCCcCceeEEEEeChHHHHHHHHHH------------HH--HhC----CCCCHHHHHHHHhccC-----cHHHHH
Confidence            9999965321  3888888775442 2210            01  112    1344433333333333     256788


Q ss_pred             HHHHHHHHHHHHHHHHc
Q 015729          276 ERHRRLGKATRLAVEAW  292 (401)
Q Consensus       276 ~~~~~~~~~l~~~L~~~  292 (401)
                      ++..+++..+.+.|++.
T Consensus       271 ~~~~~~a~~~a~~L~~~  287 (403)
T PRK07810        271 RHSNASALRIAEFLEGH  287 (403)
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            88899999999999875

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.91  E-value=4.9e-22  Score=169.56  Aligned_cols=328  Identities=14%  Similarity=0.101  Sum_probs=242.5

Q ss_pred             CCCCCCcccccCCCcCChHHHHHHHccCcCCCCCc----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc
Q 015729            4 MYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSP----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN   79 (401)
Q Consensus         4 ~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~----~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~   79 (401)
                      +-++.++||--...+.+..+..+++.++.....+.    +..++-..|+..|+++-+.++   .++.+++-.|+..++-+
T Consensus        70 lnFcaNnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~rED---~ilypscfdANag~fea  146 (417)
T KOG1359|consen   70 LNFCANNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHGRED---TILYPSCFDANAGAFEA  146 (417)
T ss_pred             eeecccccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHhCCCc---eEEeccccccchHHHHH
Confidence            45788999988888888888888888876543332    246777789999999987766   67888899999999999


Q ss_pred             cCCCCCeEEEEcCCcchHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHH
Q 015729           80 TLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSK  158 (401)
Q Consensus        80 ~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~  158 (401)
                      ++.|.|.|+.....|-|.. -..++++++            ..|.-.++..+.+.-..|.++++-....++.|.+.|+++
T Consensus       147 il~pedAvfSDeLNhASIIdGirLckry~------------h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaPl~e  214 (417)
T KOG1359|consen  147 ILTPEDAVFSDELNHASIIDGIRLCKRYR------------HVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAPLEE  214 (417)
T ss_pred             hcChhhhhhccccccchhhhhhHHHhhhc------------cchhHHHHHHHHHhhhheEEEEEecceeccCCCcccHHH
Confidence            9999999888887777665 223444322            245556665554332256788888888899999999999


Q ss_pred             HHHHhhhcCCCcEEEEecccccCccee---------ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCc
Q 015729          159 VRKLLDEYRHPALFLVDGVSSICAIDF---------RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR  229 (401)
Q Consensus       159 i~~l~~~~~~~~~li~D~a~~~~~~~~---------~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~  229 (401)
                      |.+++++  ||.++++|++|+.|..-.         .. ...+|++.++..|.++|..| |+..+++++..-+++...++
T Consensus       215 i~~La~k--YgaLlfiDecHaTgf~G~tGrGt~E~~~v-m~~vdiinsTLgKAlGga~G-Gyttgp~~li~llrqr~Rpy  290 (417)
T KOG1359|consen  215 ISQLAKK--YGALLFIDECHATGFFGETGRGTAEEFGV-MGDVDIINSTLGKALGGASG-GYTTGPKPLISLLRQRSRPY  290 (417)
T ss_pred             HHHHHHh--cCcEEEEeecccceeecCCCCChHHHhCC-CCcceehhhhhhhhhcCCCC-CCccCChhHHHHHHhcCCce
Confidence            9999999  999999999998664321         11 13589999999999976666 99999999988777653322


Q ss_pred             cccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeE
Q 015729          230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVT  309 (401)
Q Consensus       230 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~  309 (401)
                      .                |.++.++.-+....++++.+...  .+...+.+.+.+++++..+..|+.+.+.     +.+++
T Consensus       291 l----------------FSnslppavV~~a~ka~dllm~s--~~~i~~~~a~~qrfr~~me~aGftIsg~-----~hPI~  347 (417)
T KOG1359|consen  291 L----------------FSNSLPPAVVGMAAKAYDLLMVS--SKEIQSRQANTQRFREFMEAAGFTISGA-----SHPIC  347 (417)
T ss_pred             e----------------ecCCCChhhhhhhHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHhcCceecCC-----CCCcc
Confidence            2                13345544444556677776654  4677788899999999998889998764     23455


Q ss_pred             EEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          310 AVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       310 ~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~---~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      .+-+.+..-+..+++.|+++ ||+|....++.   ..-.+|+-..+.+|+||||++++++.++.+..+
T Consensus       348 pv~lGda~lA~~~ad~lLk~-Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~~~  414 (417)
T KOG1359|consen  348 PVMLGDARLASKMADELLKR-GIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFLN  414 (417)
T ss_pred             ceecccHHHHHHHHHHHHhc-CceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhhc
Confidence            55564433466788888877 99887654432   223499998999999999999999999876543

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.91  E-value=2e-21  Score=185.76  Aligned_cols=310  Identities=18%  Similarity=0.176  Sum_probs=211.8

Q ss_pred             ChHHHHHHHccCcCC--CCCc-cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc---------CCC-CCe
Q 015729           20 IPDQVIRAMNRNNED--YRSP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT---------LSP-GDR   86 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~---------~~~-gd~   86 (401)
                      .+|++.+++.+....  +.+. ...+...++.++++++++.+   .++++++|++|++.++...         ..+ .++
T Consensus        54 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~  130 (401)
T TIGR01885        54 CHPKIVKALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLFGYD---KVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAI  130 (401)
T ss_pred             CCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhcCCC---EEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCE
Confidence            367777777764321  2221 13466788999999998753   4899999999999988652         123 356


Q ss_pred             EEEEcCCcchHHHHHHHHH--------cC---CcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc
Q 015729           87 IISFLIGQFSLLWIDQQQR--------LN---FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN  155 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~--------~g---~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~  155 (401)
                      |+.....|++..+..+...        .+   ..+..++.+     |++++++.+++.. +++.++++..+++++|.+.+
T Consensus       131 i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~-~~~~avi~E~v~~~~G~~~~  204 (401)
T TIGR01885       131 IVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYN-----NLEALEEALEDHG-PNVCAFIVEPIQGEAGVVVP  204 (401)
T ss_pred             EEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCC-----CHHHHHHHHHhcC-CCEEEEEEeCccCCCCCccC
Confidence            6667667776543332221        11   122333222     7899999887543 46788899999999999987


Q ss_pred             ----hHHHHHHhhhcCCCcEEEEecccccCc---ce--eccCcccceEEEecCCCcccCC-CcceEEEecHHHHHHhccC
Q 015729          156 ----LSKVRKLLDEYRHPALFLVDGVSSICA---ID--FRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTA  225 (401)
Q Consensus       156 ----l~~i~~l~~~~~~~~~li~D~a~~~~~---~~--~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~~  225 (401)
                          +++|.++|++  +|+++|+|++|....   ..  .+.....+|++++|  |.++++ .++|+++.++++.+.+...
T Consensus       205 ~~~~l~~l~~l~~~--~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~~g--K~l~~g~~~ig~v~~~~~i~~~~~~~  280 (401)
T TIGR01885       205 DDGYLKKVRELCTK--HNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLG--KALSGGVYPVSAVLADDDVMLTIKPG  280 (401)
T ss_pred             CHHHHHHHHHHHHH--cCCEEEEechhhCCCccchhhHHhhcCCCCCEEEee--ccccCCCCCcEEEEEcHHHHhhccCC
Confidence                8999999999  999999999985321   11  12233467888765  998654 4579999999887766431


Q ss_pred             CCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCC
Q 015729          226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS  305 (401)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  305 (401)
                      ..                +.  .++.++..++++.++++.+.+++   ..++..++.+++++.|++++..+.....  ..
T Consensus       281 ~~----------------~~--t~~~~p~~~~aa~a~L~~i~~~~---l~~~~~~~~~~~~~~L~~l~~~~~~~~~--g~  337 (401)
T TIGR01885       281 EH----------------GS--TYGGNPLACAVAVAALEVLEEEK---LAENAEKLGEIFRDQLKKLPKPIITEVR--GR  337 (401)
T ss_pred             CC----------------CC--CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhccCCceeEEe--ec
Confidence            10                11  22345666778888888887643   5567778889999999988544432111  24


Q ss_pred             ceeEEEEcCCC---CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          306 DTVTAVIVPSH---INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       306 ~~~~~~~~~~~---~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      +.+..+.++++   .+..++.+.|.++ ||.+.+.    .++.+||++...++++|+++++++|++++
T Consensus       338 g~~~~i~~~~~~~~~~~~~l~~~l~~~-Gv~v~~~----~~~~lRi~p~l~~t~~~i~~~l~~l~~~l  400 (401)
T TIGR01885       338 GLLNAIVIDESKTGRTAWDLCLKLKEK-GLLAKPT----HGNIIRLAPPLVITEEQLDEGLEIIKKVI  400 (401)
T ss_pred             CeeEEEEeccCcchhHHHHHHHHHHhC-CEEEEec----CCCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence            45666666433   2467899999866 9998654    25689999888899999999999998876

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.91  E-value=6e-22  Score=188.96  Aligned_cols=151  Identities=13%  Similarity=0.080  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      .....++++.++++.|.+.   .++++||++|+++++.+++++||+|+++...|.+..  +...+...|+++++++.+  
T Consensus        63 ~p~~~~le~~lA~l~g~~~---av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~--  137 (433)
T PRK08134         63 NPTVAVLEERVAALEGGVG---AIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPG--  137 (433)
T ss_pred             ChHHHHHHHHHHHHhCCCc---EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCC--
Confidence            4568899999999999876   688999999999999888999999999998877654  233346689999999865  


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                         |++++++++++    ++++|++.+++||+|.+.|+++|.++|++  +|+++|+|++++.+..... .+.|+|++++|
T Consensus       138 ---d~~~l~~~i~~----~TklV~~e~~~np~g~v~Di~~I~~la~~--~gi~livD~t~a~~~~~~p-l~~GaD~vv~S  207 (433)
T PRK08134        138 ---DIDGWRAAIRP----NTRLLFGETLGNPGLEVLDIPTVAAIAHE--AGVPLLVDSTFTTPYLLRP-FEHGADLVYHS  207 (433)
T ss_pred             ---CHHHHHHhcCC----CCeEEEEECCCcccCcccCHHHHHHHHHH--cCCEEEEECCCcccccCCc-hhcCCCEEEec
Confidence               79999999974    56999999999999999999999999999  9999999999987765433 36799999999


Q ss_pred             CCCcccCC
Q 015729          199 SQKALSLP  206 (401)
Q Consensus       199 ~~K~l~g~  206 (401)
                      .||+++|+
T Consensus       208 ~tK~l~g~  215 (433)
T PRK08134        208 ATKFLGGH  215 (433)
T ss_pred             cccccCCC
Confidence            99998644

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.91  E-value=1.3e-21  Score=200.65  Aligned_cols=316  Identities=16%  Similarity=0.085  Sum_probs=228.0

Q ss_pred             CcCChHHHHHHHccCcCCC-----CCcc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCC--C
Q 015729           17 PVHIPDQVIRAMNRNNEDY-----RSPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSP--G   84 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~-----~~~~----~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~--g   84 (401)
                      |...|+.+.+.+.+....+     ++++    ..+.+.+++.+++++.|.+..+ +.++.++|++.+.++.+. +++  +
T Consensus        87 ~~~~P~vi~~~i~~~~~~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG~~~an-aSl~d~aTAa~ea~~~a~~~~~~~~  165 (954)
T PRK05367         87 GTHTPPVILRNILENPAWYTAYTPYQPEISQGRLEALLNFQTMVADLTGLEIAN-ASLLDEATAAAEAMALAKRVSKSKS  165 (954)
T ss_pred             CCcCcHHHHHHHHhCcchhhccCCCChHHHHHHHHHHHHHHHHHHHHHCCChhh-ccccccHHHHHHHHHHhhhhccCCC
Confidence            4555555546666643211     2222    2344678999999999998654 889999999999877664 445  4


Q ss_pred             CeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHH
Q 015729           85 DRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKL  162 (401)
Q Consensus        85 d~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l  162 (401)
                      |+|++++..|++..  +...++..|++++.++.+.+    .+      +    +++ ..++.+..|.+|.+.|+++|.++
T Consensus       166 ~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~d----~~------~----~~~-~~vlvq~p~~~G~i~d~~~i~~~  230 (954)
T PRK05367        166 NRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAKA----LD------H----DDV-FGVLLQYPGTSGEVRDYTALIAA  230 (954)
T ss_pred             CEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCccC----CC------c----ccE-EEEEEecCCCCeeeccHHHHHHH
Confidence            89999999998876  56677889999999987542    11      1    234 33456667889999999999999


Q ss_pred             hhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCc-----ccCCCcceEEEecHHHHHHhccCCCCc--------
Q 015729          163 LDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKA-----LSLPTGMGIVCASPKALEASKTAKSVR--------  229 (401)
Q Consensus       163 ~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~-----l~g~~g~G~l~~~~~~~~~~~~~~~~~--------  229 (401)
                      ||+  +|+++++|+.+.......+..++|+|++++++|||     + |+++.|++++++++.+.+++.....        
T Consensus       231 ah~--~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~g~-GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~  307 (954)
T PRK05367        231 AHA--RGALVAVAADLLALTLLTPPGEMGADIAVGSAQRFGVPMGF-GGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNP  307 (954)
T ss_pred             HHH--cCCEEEEEehhhhccCCCChhhcCCCEEEeeCcccCCCCCC-CCCCEEEEEECHHHHhhCCCCeeeeecccCCCc
Confidence            999  99999999977444444577889999999999998     4 3457999999999888877554310        


Q ss_pred             -c--ccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHH-----HHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Q 015729          230 -V--FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAAL-----DLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKE  301 (401)
Q Consensus       230 -~--~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al-----~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  301 (401)
                       +  ..+..++..+++.++     +++....++.+++     .++...|++++.++...++.++++.|++.|+++...  
T Consensus       308 ~~~lalqtReqhiRrekaT-----sNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~~--  380 (954)
T PRK05367        308 ALRLALQTREQHIRREKAT-----SNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLEVVHD--  380 (954)
T ss_pred             ccccccccccccccccccc-----cccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcccCCC--
Confidence             0  012233445667775     4444322223222     445677899999999999999999998888887643  


Q ss_pred             ccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHH
Q 015729          302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVE  367 (401)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~  367 (401)
                      . ... .+.+.++  .+..++.++|.++ ||.++..    .++.+|+++..+.|++|||.+++++.
T Consensus       381 ~-~f~-~~~~~~~--~~~~~i~~~l~~~-gi~~~~~----~~~~l~is~~e~~t~~did~l~~~l~  437 (954)
T PRK05367        381 S-FFD-TLTVEVG--GDAAAVLARALAA-GINLRRV----DDDHVGISLDETTTREDLAALLAVFG  437 (954)
T ss_pred             C-CCC-eEEEeCC--CCHHHHHHHHHHC-Cceeccc----cCCEEEEEecccCCHHHHHHHHHHHc
Confidence            1 222 4456663  3688999999876 8887422    24579999999999999999999996

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.91  E-value=1.2e-21  Score=186.21  Aligned_cols=216  Identities=15%  Similarity=0.096  Sum_probs=159.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      .....++++.+++++|.+.   .++++||+.|+..++.+++++||+|+++.+.|....  +...++..|++++.++.+  
T Consensus        64 ~p~~~~le~~lA~l~g~~~---~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~--  138 (403)
T PRK07503         64 NPTLALLEQRMASLEGGEA---AVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT--  138 (403)
T ss_pred             CchHHHHHHHHHHHhCCCc---EEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCC--
Confidence            4567899999999999865   567778999999998888999999999988654433  234456789999988764  


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                         |++++++++++    ++++|++++++||+|.+.|+++|.++|++  +|+++|+|++++.+...... ..++|++++|
T Consensus       139 ---d~~~l~~~i~~----~tklV~le~p~NPtG~~~di~~I~~la~~--~gi~lIvD~a~a~~~~~~~l-~~g~Di~v~S  208 (403)
T PRK07503        139 ---DPAALKAAISD----KTRMVYFETPANPNMRLVDIAAVAEIAHG--AGAKVVVDNTYCTPYLQRPL-ELGADLVVHS  208 (403)
T ss_pred             ---CHHHHHHhcCc----cCcEEEEeCCCCCCCeeeCHHHHHHHHHH--cCCEEEEECCCcccccCCch-hhCCCEEEcc
Confidence               79999998874    56999999999999999999999999999  99999999999865332222 3578999999


Q ss_pred             CCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHH
Q 015729          199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE  276 (401)
Q Consensus       199 ~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~  276 (401)
                      .+|+++++.+  .|+++.++++.+++.....           ..     .+....+...++.+...++     .+....+
T Consensus       209 ~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~-----------~~-----~~g~~~s~~~a~l~l~~L~-----tl~~r~~  267 (403)
T PRK07503        209 ATKYLGGHGDITAGLVVGGKALADRIRLEGL-----------KD-----MTGAVMSPFDAFLLMRGLK-----TLALRMD  267 (403)
T ss_pred             ccccccCCCceeEEEEEcCHHHHHHHHhhhH-----------Hh-----CcCCCCCHHHHHHHHcCcc-----hHHHHHH
Confidence            9999975432  5888888888776652100           00     0112344432222222222     2455667


Q ss_pred             HHHHHHHHHHHHHHHc
Q 015729          277 RHRRLGKATRLAVEAW  292 (401)
Q Consensus       277 ~~~~~~~~l~~~L~~~  292 (401)
                      +..++++.+.+.|++.
T Consensus       268 ~~~~na~~~a~~L~~~  283 (403)
T PRK07503        268 RHCASAQAVAEWLARH  283 (403)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            7778899999999875

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.91  E-value=1e-21  Score=184.96  Aligned_cols=302  Identities=18%  Similarity=0.185  Sum_probs=202.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCC-C
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-G  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~  118 (401)
                      .....++++.+++++|.+.   ++.++|||.|+.+++.++ +++||+|+++...+++..  ......|++++++++++ .
T Consensus        24 g~~~~~fE~~~a~~~g~~~---~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~--~ai~~~G~~pv~~Di~~~~   98 (363)
T PF01041_consen   24 GPYVEEFEKEFAEYFGVKY---AVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATA--SAILWAGAEPVFVDIDPET   98 (363)
T ss_dssp             SHHHHHHHHHHHHHHTSSE---EEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHH--HHHHHTT-EEEEE-BETTT
T ss_pred             CHHHHHHHHHHHHHhCCCe---EEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHH--HHHHHhccEEEEEeccCCc
Confidence            5778899999999999776   889999999999999774 689999999988766553  56777999999999985 5


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceecc--CcccceEEE
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRM--DEWGIDVAL  196 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~--~~~~~di~~  196 (401)
                      ..+|++.+++++++    ++++|+++|.   .|...++++|.++|++  +|++||.|++|+.|+..-+.  ... -|+.+
T Consensus        99 ~~id~~~~~~~i~~----~t~ai~~~h~---~G~~~d~~~i~~~~~~--~~i~lIeD~a~a~g~~~~g~~~G~~-gd~~~  168 (363)
T PF01041_consen   99 LNIDPEALEKAITP----KTKAILVVHL---FGNPADMDAIRAIARK--HGIPLIEDAAQAFGARYKGRPVGSF-GDIAI  168 (363)
T ss_dssp             SSB-HHHHHHHHHT----TEEEEEEE-G---GGB---HHHHHHHHHH--TT-EEEEE-TTTTT-EETTEETTSS-SSEEE
T ss_pred             CCcCHHHHHHHhcc----CccEEEEecC---CCCcccHHHHHHHHHH--cCCcEEEccccccCceeCCEeccCC-CCceE
Confidence            68999999999985    5699999974   6888999999999999  99999999999998754221  112 26666


Q ss_pred             ec--CCCcccCCCcceEEEecH-HHHHHhccCCCCccccchHHHHHHhhcC--CCCCCCCcHHHHHHHHHHHHHHHHhcH
Q 015729          197 TG--SQKALSLPTGMGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLG--TFWPYTPSIQLLYGLRAALDLIFEEGL  271 (401)
Q Consensus       197 ~s--~~K~l~g~~g~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~a~~~al~~~~~~g~  271 (401)
                      +|  ..|.+.++.| |++++++ ++.+++......+....   ....+...  ..+.+-.+     .+.+|+...+-..+
T Consensus       169 fSf~~~K~i~~geG-G~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~g~n~rm~-----~~~AAigl~QL~~L  239 (363)
T PF01041_consen  169 FSFHPTKIITTGEG-GAVVTNDPELAERARALRNHGRSRD---AFRRYRHELPPGYNFRMS-----ELQAAIGLAQLKRL  239 (363)
T ss_dssp             EESSTTSSS-SSS--EEEEESTHHHHHHHHHHTBTTEETS---ECSTTEESSSS--B-B-B-----HHHHHHHHHHHHTH
T ss_pred             ecCCCCCCCcCCCC-eeEEecHHHHHHHhhhhhccCcCcc---ccccccccccCCcccccH-----HHHHHHHHHHHHHh
Confidence            66  5699976776 7887765 44555543322111000   00000000  00011122     33455554444457


Q ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCccccCCCc-c-CCceeEEEEcCCC--CCHHHHHHHHHhhCCeEEccCCC-CC----
Q 015729          272 ENVIERHRRLGKATRLAVEAW-GLKNCTQKEE-W-FSDTVTAVIVPSH--INSSEIVRRAWQRYNLSLGLGLN-KV----  341 (401)
Q Consensus       272 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~-~~~~~~~~~~~~~--~~~~~l~~~L~~~~~i~v~~g~~-~~----  341 (401)
                      +...++.+++.+.+.+.|.+. ++......+. . ..+..+.+.+++.  .+.+++.+.|.++ ||.+...+. +.    
T Consensus       240 ~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~rd~l~~~L~~~-GI~~~~~~~~pl~~~~  318 (363)
T PF01041_consen  240 DEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEALADRDELVEALRAR-GIETRPHYPKPLHRQP  318 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGCSTHHHHHHHHHHT-TBEEBCSTSSCGGGSG
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccccccchHHHHHHHHHHC-CCcccccccCchhhhH
Confidence            788889999999999999987 5544332222 1 3455666777543  3678899999877 999887762 11    


Q ss_pred             ---------C----------CcEEEEeecccCCHHHHHHHHHHHH
Q 015729          342 ---------A----------GKVFRIGHLGHLNELQLLGCLAGVE  367 (401)
Q Consensus       342 ---------~----------~~~~Ri~~~~~~~~~di~~~~~~i~  367 (401)
                               .          ...+.+.++..++++|+++++++|+
T Consensus       319 ~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir  363 (363)
T PF01041_consen  319 VYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR  363 (363)
T ss_dssp             GGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred             HHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence                     0          1338888888899999999999885

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.90  E-value=9.6e-22  Score=185.28  Aligned_cols=288  Identities=13%  Similarity=0.081  Sum_probs=191.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDW  117 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~  117 (401)
                      ......+|+++++++.|.+.   .+++++|+.|+.+++ +++++||+|+++++.|.+..  +...+...|++++.++.. 
T Consensus        48 ~~p~~~~Le~~la~l~g~~~---al~~~SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~-  122 (380)
T PRK06176         48 GNPTRFALEELIADLEGGVK---GFAFASGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTS-  122 (380)
T ss_pred             CChhHHHHHHHHHHHhCCCC---EEEECCHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCC-
Confidence            34557899999999999765   566788899998665 57899999999998776654  445667789988888643 


Q ss_pred             CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEe
Q 015729          118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT  197 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~  197 (401)
                          |++++++++++    ++++|++++|+||+|.+.|+++|.++|++  +|+++|+|++++.+.... ....++|++++
T Consensus       123 ----d~e~l~~ai~~----~t~lV~lesP~Nptg~~~di~~I~~la~~--~gi~vivD~t~a~~~~~~-p~~~gaDivv~  191 (380)
T PRK06176        123 ----DLSQIKKAIKP----NTKALYLETPSNPLLKITDLAQCASVAKD--HGLLTIVDNTFATPYYQN-PLLLGADIVVH  191 (380)
T ss_pred             ----CHHHHHHhcCc----CceEEEEECCCCCCceecCHHHHHHHHHH--cCCEEEEECCccccccCC-ccccCCCEEEe
Confidence                79999998874    56999999999999999999999999999  999999999988654322 23568999999


Q ss_pred             cCCCcccCCCc--ceEEEecH-HHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHH
Q 015729          198 GSQKALSLPTG--MGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENV  274 (401)
Q Consensus       198 s~~K~l~g~~g--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~  274 (401)
                      |.+|+++|+..  .|+++.++ ++.+++...             ... .|.    ..++.....+...+     ..+..+
T Consensus       192 S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~-------------~~~-~G~----~~~~~~~~l~~~gl-----~tl~~R  248 (380)
T PRK06176        192 SGTKYLGGHSDVVAGLVTTNNEALAQEIAFF-------------QNA-IGG----VLGPQDSWLLQRGI-----KTLGLR  248 (380)
T ss_pred             cCceeccCCccceeeEEEecHHHHHHHHHHH-------------HHH-hcC----CCCHHHHHHHHhcc-----CcHHHH
Confidence            99999976542  37777754 444433211             000 121    12221111111111     124567


Q ss_pred             HHHHHHHHHHHHHHHHHc-CCc-----cccCCCc--------cCCceeEEEEcCCCCCHHHHHHHHHhhCCe---EEccC
Q 015729          275 IERHRRLGKATRLAVEAW-GLK-----NCTQKEE--------WFSDTVTAVIVPSHINSSEIVRRAWQRYNL---SLGLG  337 (401)
Q Consensus       275 ~~~~~~~~~~l~~~L~~~-g~~-----~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i---~v~~g  337 (401)
                      +++..+++..+.+.|++. .+.     -+...+.        ...+.++.|++. +  .++. ..+.++..+   .+..|
T Consensus       249 ~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~-~--~~~~-~~f~~~l~~~~~~~s~G  324 (380)
T PRK06176        249 MEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLK-N--DSEA-VAFVESLKLFILGESLG  324 (380)
T ss_pred             HHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-C--HHHH-HHHHHcCCcceEccCCC
Confidence            777788888888888874 221     1111000        124568889984 2  2222 233333222   22222


Q ss_pred             CC-----------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          338 LN-----------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       338 ~~-----------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      ..                       ...++.+|+|+.    -||.|.+++-|+.+|+.+|
T Consensus       325 ~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG----lE~~~dli~dl~~Al~~~~  380 (380)
T PRK06176        325 GVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVG----IEHEQDLLEDLEQAFAKIG  380 (380)
T ss_pred             CCCceeeCCcccccccCCHHHHHhcCCCcCeEEEEec----cCCHHHHHHHHHHHHhhcC
Confidence            11                       012356999864    4788888888888887654

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.90  E-value=3e-21  Score=183.90  Aligned_cols=287  Identities=14%  Similarity=0.099  Sum_probs=197.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--C------CCCCeEEEEcCCcchHHHHHHHHHcCC----
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--L------SPGDRIISFLIGQFSLLWIDQQQRLNF----  108 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~------~~gd~vl~~~~~~~~~~~~~~~~~~g~----  108 (401)
                      .+...++.++|+++.+.+   .+.++++|++|++.++...  .      ...++|+..+.+||+.....+ ...+.    
T Consensus        76 ~~~~~~la~~L~~~~~~~---~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~-~~~~~~~~~  151 (397)
T TIGR03246        76 NEPVLRLAKKLVDATFAD---KVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTV-SVGGQPKYS  151 (397)
T ss_pred             CHHHHHHHHHHHhhCCCC---EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHH-HhcCCcccc
Confidence            345678999999987543   4999999999999988542  1      123578888888888753222 21221    


Q ss_pred             --------cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccccc----chHHHHHHhhhcCCCcEEEEec
Q 015729          109 --------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN----NLSKVRKLLDEYRHPALFLVDG  176 (401)
Q Consensus       109 --------~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~----~l~~i~~l~~~~~~~~~li~D~  176 (401)
                              .+..++.+     |++++++.++    +++++|+++.++++.|...    .+++|.++|++  +|+++|+|+
T Consensus       152 ~~~~~~~~~~~~~~~~-----d~~~l~~~l~----~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~--~g~llI~DE  220 (397)
T TIGR03246       152 QGFAPLPGGIKHAPYN-----DLAAAKALIS----DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDR--HNALLIFDE  220 (397)
T ss_pred             cCCCCCCCceEEeCCC-----CHHHHHHHhc----cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHH--cCCEEEEec
Confidence                    12223222     7899999886    3679999998888888664    28899999999  999999999


Q ss_pred             ccccCcc---eeccC--cccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCC
Q 015729          177 VSSICAI---DFRMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP  251 (401)
Q Consensus       177 a~~~~~~---~~~~~--~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  251 (401)
                      +|.....   .+...  ...+|++++  +|.++++.++|++++++++.+.+.....                +.  .++.
T Consensus       221 v~tG~Gr~G~~~a~~~~gv~pDi~t~--~K~lggG~pigav~~~~~i~~~~~~~~~----------------~~--t~~~  280 (397)
T TIGR03246       221 VQTGVGRTGELYAYMHYGVTPDILTS--AKALGGGFPIGAMLTTTEIAAHLKVGTH----------------GT--TYGG  280 (397)
T ss_pred             hhhcCCccccchhhhhcCCCCCEEEe--ehhhhCCcceeEEEEcHHHHHhccCCCc----------------CC--CCCC
Confidence            9842211   11111  234677754  5999766678999999998776643210                11  2234


Q ss_pred             cHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcC--CccccCCCccCCceeEEEEcCCC--CCHHHHHHHHH
Q 015729          252 SIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG--LKNCTQKEEWFSDTVTAVIVPSH--INSSEIVRRAW  327 (401)
Q Consensus       252 ~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~  327 (401)
                      ++..++++.++++.+.+   ++..++++++.+++++.|++++  +.+....  ...+.++.+.+.+.  .....+++.|.
T Consensus       281 ~p~~~aaa~a~l~~~~~---~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~v--rg~G~~~~i~~~~~~~~~~~~~~~~l~  355 (397)
T TIGR03246       281 NPLACAVAGKVLDLVNT---PELLAGVKQRHDLFVDGLEKINARYNVFSEI--RGKGLLIGAVLTEAYQGKAKQFVNAAA  355 (397)
T ss_pred             CHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEee--ecCceEEEEEEcCchhhHHHHHHHHHH
Confidence            55667778888887654   3478888899999999998864  3322211  12345566665322  23567888888


Q ss_pred             hhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          328 QRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       328 ~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      ++ |+.+.+.    ..+++|+++...+|++|++++++++++++.+
T Consensus       356 ~~-Gv~~~~~----g~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~  395 (397)
T TIGR03246       356 EE-GVIALIA----GPNVVRFAPSLVISDDDIDEGLARFERAIEQ  395 (397)
T ss_pred             HC-CeEEeec----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            76 8887643    2368999888889999999999999998875

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK04311 selenocysteine synthase; Provisional

Probab=99.90  E-value=3e-21  Score=184.45  Aligned_cols=327  Identities=16%  Similarity=0.082  Sum_probs=217.2

Q ss_pred             CCCcccccCCCcCChHHHHHHHccCcCCCC----Cc---cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc
Q 015729            7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYR----SP---AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN   79 (401)
Q Consensus         7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~----~~---~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~   79 (401)
                      .+..|..-.|-+++++++++++.+....+.    ..   ...+.+.++++.+++++|.+.   .++++|++.|+..++.+
T Consensus        85 tg~v~~tNlg~s~l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Gae~---a~vv~sgtaAl~l~l~~  161 (464)
T PRK04311         85 TGVVLHTNLGRALLSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGAED---ALVVNNNAAAVLLALNA  161 (464)
T ss_pred             CccEEeccCCCCCCCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCCCe---EEEECCHHHHHHHHHHH
Confidence            345555555778899999999977543321    00   113446799999999999875   67888899999988755


Q ss_pred             cCCCCCeEEEEcCCcch----HHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCC--cc--
Q 015729           80 TLSPGDRIISFLIGQFS----LLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETA--TG--  151 (401)
Q Consensus        80 ~~~~gd~vl~~~~~~~~----~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~--tG--  151 (401)
                       +.+||+|+++..+++.    ..+....+..|+++++++.+.  ..+++++++++++    ++++++++|++|+  +|  
T Consensus       162 -l~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~--~t~~~dle~aI~~----~TklV~~vh~sN~~i~G~~  234 (464)
T PRK04311        162 -LAAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTN--RTHLRDYEQAINE----NTALLLKVHTSNYRIEGFT  234 (464)
T ss_pred             -hCCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCC--CCCHHHHHHhcCc----cCeEEEEEcCCCccccccC
Confidence             6899999998765552    223345677899999987643  3579999999974    5699999999997  34  


Q ss_pred             cccchHHHHHHhhhcCCCcEEEEecccccC---------cce--eccCcccceEEEecCCCcccCCCcceEEEecHHHHH
Q 015729          152 VTNNLSKVRKLLDEYRHPALFLVDGVSSIC---------AID--FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE  220 (401)
Q Consensus       152 ~~~~l~~i~~l~~~~~~~~~li~D~a~~~~---------~~~--~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~  220 (401)
                      ...|+++|.++|++  +|+++++|++++..         ..+  .+..+.|+|++++|++|+++|+ ..|++++++++++
T Consensus       235 ~~~dl~eI~~lak~--~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~~G~i~g~~~li~  311 (464)
T PRK04311        235 KEVSLAELAALGKE--HGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP-QAGIIVGKKELIA  311 (464)
T ss_pred             CcCCHHHHHHHHHH--cCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC-ceEEEEEcHHHHH
Confidence            56799999999999  99999999854321         111  1223478999999999999766 4799999999988


Q ss_pred             HhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhc-----------HHHHHHHHHHHHHHHHHHH
Q 015729          221 ASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-----------LENVIERHRRLGKATRLAV  289 (401)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g-----------~~~~~~~~~~~~~~l~~~L  289 (401)
                      ++.....          .+.+.        ..-..++++.+.+..+....           +....++.+++++.+.+.|
T Consensus       312 ~l~~~~~----------~r~lr--------~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L  373 (464)
T PRK04311        312 RLKKHPL----------KRALR--------VDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAAL  373 (464)
T ss_pred             HHhhchh----------HHHHh--------cchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHH
Confidence            7663211          01111        11133456666666443211           2223466777888888888


Q ss_pred             HHc---CC--ccccC--------CCccCCceeEEEEc-CCCCCHHHHHHHHHhh-CCeEEccCCCCCCCcEEEEeecccC
Q 015729          290 EAW---GL--KNCTQ--------KEEWFSDTVTAVIV-PSHINSSEIVRRAWQR-YNLSLGLGLNKVAGKVFRIGHLGHL  354 (401)
Q Consensus       290 ~~~---g~--~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~-~~i~v~~g~~~~~~~~~Ri~~~~~~  354 (401)
                      ...   ++  .+...        .+.... .-..+.+ +.+.+..++.++|++. .-|..+     ...+.+.+-+- ++
T Consensus       374 ~~~~~~~~~~~~~~~~~~~gggs~p~~~~-~~~~v~~~~~~~~~~~l~~~lr~~~~~i~~r-----~~~~~~~ld~r-~~  446 (464)
T PRK04311        374 KAALGAAFAVEVVPSFSQVGGGSLPVDRL-PSAAVTLTPKDRSLEALAARLRLLPPPVIGR-----IEDGRLLLDLR-TL  446 (464)
T ss_pred             HhccCCCeeEEEEEccCccCCCCCcCCCC-CeEEEEEeCCCCCHHHHHHHHhcCCCCEEEE-----EECCEEEEEeC-cC
Confidence            764   22  22221        111111 2223333 2456788999999753 124433     22455666443 47


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 015729          355 NELQLLGCLAGVEMILK  371 (401)
Q Consensus       355 ~~~di~~~~~~i~~~l~  371 (401)
                      .++|++.+++++++++.
T Consensus       447 ~~~~~~~~~~~~~~~~~  463 (464)
T PRK04311        447 EEEDEERLAAALLEALN  463 (464)
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            88999999999988764

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.90  E-value=5.4e-22  Score=187.83  Aligned_cols=286  Identities=16%  Similarity=0.092  Sum_probs=190.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      .....++++.+++++|.+.   .++++||++|+..++.+++++||+|+++.+.|.+..  +.......|++++.++.   
T Consensus        60 ~p~~~~Le~~lA~~~g~~~---~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~---  133 (388)
T PRK07811         60 NPTRTALEEQLAALEGGAY---GRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDL---  133 (388)
T ss_pred             CccHHHHHHHHHHHhCCCc---eEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCC---
Confidence            4557899999999999876   355567899999999999999999999998776543  23334446888777764   


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                        .|++++++++++    ++++|++++|+||+|.+.|+++|.++|++  +|+++|+|++++.+..... ...++|++++|
T Consensus       134 --~d~e~l~~~i~~----~tklV~ie~p~NPtg~~~dl~~I~~la~~--~gi~lIvD~a~a~~~~~~p-~~~gaDivv~S  204 (388)
T PRK07811        134 --SDLDAVRAAITP----RTKLIWVETPTNPLLSITDIAALAELAHD--AGAKVVVDNTFASPYLQQP-LALGADVVVHS  204 (388)
T ss_pred             --CCHHHHHHhcCc----CCeEEEEECCCCCcceecCHHHHHHHHHH--cCCEEEEECCCCccccCCc-hhhCCcEEEec
Confidence              389999999874    56999999999999999999999999999  9999999999887643222 23578999999


Q ss_pred             CCCcccCCCc--ceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHH
Q 015729          199 SQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI  275 (401)
Q Consensus       199 ~~K~l~g~~g--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  275 (401)
                      .+|+++|+.+  .|+++++ +++.+++...             .. ..|    ...+...   +..++..+.  .+..++
T Consensus       205 ~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~-------------~~-~~g----~~~s~~~---a~l~~~~L~--tl~~R~  261 (388)
T PRK07811        205 TTKYIGGHSDVVGGALVTNDEELDEAFAFL-------------QN-GAG----AVPGPFD---AYLTLRGLK--TLAVRM  261 (388)
T ss_pred             CceeecCCCCcEEEEEEECCHHHHHHHHHH-------------HH-hcC----CCCCHHH---HHHHHhccC--cHHHHH
Confidence            9999976543  4888776 4444433311             00 001    1233322   112222222  256677


Q ss_pred             HHHHHHHHHHHHHHHHc-CCcc-ccCC----Cc--------cCCceeEEEEcCCCCCHHHHHHHHHhhCCe---EEccCC
Q 015729          276 ERHRRLGKATRLAVEAW-GLKN-CTQK----EE--------WFSDTVTAVIVPSHINSSEIVRRAWQRYNL---SLGLGL  338 (401)
Q Consensus       276 ~~~~~~~~~l~~~L~~~-g~~~-~~~~----~~--------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i---~v~~g~  338 (401)
                      ++..++++.+.+.|++. ++.. ..+.    +.        ...+.++.|+++.  +.++. ..+.++-.+   .+..|.
T Consensus       262 ~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~--~~~~~-~~f~~~l~~~~~~~s~G~  338 (388)
T PRK07811        262 DRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAG--GEEAA-RDFCARTKVFTLAESLGG  338 (388)
T ss_pred             HHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCC--CHHHH-HHHHHhCCcceeeccCCC
Confidence            88889999999999875 4321 1111    00        1235688899842  22332 233333222   222221


Q ss_pred             C--------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          339 N--------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       339 ~--------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      .                    ...++.+|||+..    ||.+.+++.|+.+|+
T Consensus       339 ~~sl~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~  387 (388)
T PRK07811        339 VESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI----EDVADLLADLEQALG  387 (388)
T ss_pred             CcceEeCCcccCcccCCHhhcCCCCCEEEEEeCC----CCHHHHHHHHHHHhh
Confidence            0                    0113579998654    677777777777664

>PRK07505 hypothetical protein; Provisional

Probab=99.90  E-value=4.1e-21  Score=183.69  Aligned_cols=323  Identities=12%  Similarity=0.126  Sum_probs=201.5

Q ss_pred             CCcccccCCCc----CChHHHHHHHccCcCC-----CCC---ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHH
Q 015729            8 GKNHLFVPGPV----HIPDQVIRAMNRNNED-----YRS---PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWES   75 (401)
Q Consensus         8 ~~~~~~~~~p~----~~~~~v~~a~~~~~~~-----~~~---~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~   75 (401)
                      |+.|++..+-.    .-+|+|++++.++...     +..   ....+...++++.|+++++. .   .++.++|++|++.
T Consensus        45 g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~---~~~~~sG~~a~~~  120 (402)
T PRK07505         45 GHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA-S---VLTFTSCSAAHLG  120 (402)
T ss_pred             CceEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC-C---EEEECChHHHHHH
Confidence            45555554322    3367777776664321     111   12345678999999999986 2   5555677888887


Q ss_pred             HHhc----cCCCCC-eEEEEcCCcchHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCC
Q 015729           76 ALTN----TLSPGD-RIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETA  149 (401)
Q Consensus        76 ~~~~----~~~~gd-~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~  149 (401)
                      ++..    .+.+++ .+++.+..+|+.. ........+.+++.++.+     |++++++++++    ++++++++.|+||
T Consensus       121 ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~~-----d~~~l~~~~~~----~~~~~vl~~p~~~  191 (402)
T PRK07505        121 ILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDHN-----DLDALEDICKT----NKTVAYVADGVYS  191 (402)
T ss_pred             HHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCCC-----CHHHHHHHHhc----CCCEEEEEecccc
Confidence            6632    223333 3666665444432 111122235567777653     89999998864    3478899999999


Q ss_pred             cccccchHHHHHHhhhcCCCcEEEEecccccCcc-----eec---cC--cccceEEEecCCCcccCCCcceEEEe-cHHH
Q 015729          150 TGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFR---MD--EWGIDVALTGSQKALSLPTGMGIVCA-SPKA  218 (401)
Q Consensus       150 tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~-----~~~---~~--~~~~di~~~s~~K~l~g~~g~G~l~~-~~~~  218 (401)
                      +|.+.++++|.++|++  +|+++|+|++|+.+.+     .+.   ..  .....+++.|.+|.++ ..| |++.. +++.
T Consensus       192 ~G~~~~~~~i~~l~~~--~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~-~~G-g~~~~~~~~~  267 (402)
T PRK07505        192 MGGIAPVKELLRLQEK--YGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFG-ASG-GVIMLGDAEQ  267 (402)
T ss_pred             cCCcCCHHHHHHHHHH--cCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhh-ccC-eEEEeCCHHH
Confidence            9999999999999999  9999999999864211     111   11  1234577789999985 444 77764 6676


Q ss_pred             HHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCcccc
Q 015729          219 LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCT  298 (401)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~  298 (401)
                      .+.+.....                +..+..+++...+++..++++...++.+.+..++..++.+.+...+...   .  
T Consensus       268 ~~~~~~~~~----------------~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~--  326 (402)
T PRK07505        268 IELILRYAG----------------PLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPTE---Q--  326 (402)
T ss_pred             HHHHHHhCC----------------CceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhc---C--
Confidence            665543211                1112334666677778888876665555555555544444433322111   1  


Q ss_pred             CCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~---~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                       . .... .+..+.+++..+..++.+.|.++ ||.+++...+.   ...++||++...+|++|+++++++|++++++
T Consensus       327 -~-g~~~-~i~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~  399 (402)
T PRK07505        327 -S-GSFL-PIRLIYIGDEDTAIKAAKQLLDR-GFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDE  399 (402)
T ss_pred             -C-CCCC-CEEEEEeCCHHHHHHHHHHHHHC-CCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence             1 1111 22333333222356788999876 99998763321   1258999999889999999999999998864

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.90  E-value=1.9e-21  Score=182.28  Aligned_cols=291  Identities=15%  Similarity=0.125  Sum_probs=197.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDW  117 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~  117 (401)
                      ..+....+++.++.+.+.+.   .+++++|++|+..++.+++++||+|+++++.|++..  +...++..|+++..++.+ 
T Consensus        62 gnPt~~~Le~~la~le~~~~---~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~-  137 (395)
T PRK05967         62 GTPTTDALCKAIDALEGSAG---TILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPE-  137 (395)
T ss_pred             CChHHHHHHHHHHHHhCCCC---EEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCC-
Confidence            34566788999988877554   566777899999999999999999999999988875  235678899999988643 


Q ss_pred             CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEe
Q 015729          118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT  197 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~  197 (401)
                          +.+.+++++++    ++|+|++++|+||++.+.|+++|.++|++  +|+++++|++++.+ ..+...++|+|+++.
T Consensus       138 ----~~e~l~~al~~----~TklV~lesPsNP~l~v~dl~~I~~la~~--~g~~vvVD~t~a~p-~~~~pl~~GaDivv~  206 (395)
T PRK05967        138 ----IGAGIAKLMRP----NTKVVHTEAPGSNTFEMQDIPAIAEAAHR--HGAIVMMDNTWATP-LYFRPLDFGVDISIH  206 (395)
T ss_pred             ----CHHHHHHhcCc----CceEEEEECCCCCCCcHHHHHHHHHHHHH--hCCEEEEECCccCc-eecChhHcCCCEEEE
Confidence                45788988874    56999999999999999999999999999  99999999998754 334556689999999


Q ss_pred             cCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHH
Q 015729          198 GSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI  275 (401)
Q Consensus       198 s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  275 (401)
                      |.+|+++|...  .|+++.+++.++++...              ....|.    +.++..   ++..++-++  -+.-++
T Consensus       207 S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~--------------~~~~G~----~~~p~d---a~l~~rgl~--Tl~lR~  263 (395)
T PRK05967        207 AATKYPSGHSDILLGTVSANEKCWPQLLEA--------------HGTLGL----CAGPDD---TYQILRGLR--TMGIRL  263 (395)
T ss_pred             ecccccCCCCCeeEEEEEcCHHHHHHHHHH--------------HHHcCC----CCCHHH---HHHHHcCcc--cHHHHH
Confidence            99999876443  37777777765544311              011132    344432   222222111  256688


Q ss_pred             HHHHHHHHHHHHHHHHc-CCc-cccC----CCc--------cCCceeEEEEcCCCC--CHHHHHHHHHhhCCe---EEcc
Q 015729          276 ERHRRLGKATRLAVEAW-GLK-NCTQ----KEE--------WFSDTVTAVIVPSHI--NSSEIVRRAWQRYNL---SLGL  336 (401)
Q Consensus       276 ~~~~~~~~~l~~~L~~~-g~~-~~~~----~~~--------~~~~~~~~~~~~~~~--~~~~l~~~L~~~~~i---~v~~  336 (401)
                      ++..+++..+.+.|++. .++ +..+    .+.        ...+.++.|.++.+.  +.+. +.++.++-.+   .+..
T Consensus       264 ~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~-~~~f~~~l~l~~~~~sl  342 (395)
T PRK05967        264 EHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAK-AHAFLDALEIFGLGYSW  342 (395)
T ss_pred             HHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHH-HHHHHHhCCcceEccCC
Confidence            88899999999999874 331 1111    110        123568889985331  2222 2333333232   2222


Q ss_pred             CCC-----------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          337 GLN-----------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       337 g~~-----------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      |..                 ...++.+|||+..    ||.|.+++-|+.+|+.+
T Consensus       343 G~~~sLi~~~~~~~~~~~~~~~~~~liRlSvGl----Ed~~dLi~Dl~~Al~~~  392 (395)
T PRK05967        343 GGYESLALHVKLGDRTVAKAPYAGPVIRLQIGL----EDVPDLKADLERGFAAA  392 (395)
T ss_pred             CCcceeeeeCCCChhHhhhccCCCCeEEEEecc----CCHHHHHHHHHHHHHhh
Confidence            211                 0123569998654    67777777777777654

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.90  E-value=3.7e-21  Score=183.96  Aligned_cols=326  Identities=14%  Similarity=0.091  Sum_probs=208.0

Q ss_pred             CCCCCCC--cccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc
Q 015729            3 YMYAPGK--NHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT   80 (401)
Q Consensus         3 ~~~~~~~--~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~   80 (401)
                      |.++.++  +.+++-++..+.+++.+.+.+... .......+...++.+++++..+.+   .++++++|++|++.++...
T Consensus        42 ~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~sGseA~e~a~kla  117 (403)
T PRK05093         42 YIDFAGGIAVTALGHCHPALVKALKEQGEKLWH-ISNVFTNEPALRLAKKLIDATFAE---RVFFANSGAEANEAAFKLA  117 (403)
T ss_pred             EEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCc-ccCccCCHHHHHHHHHHHhhCCCC---EEEEeCchHHHHHHHHHHH
Confidence            3344443  333343555555555555544221 111111233458888888876542   4899999999999988532


Q ss_pred             --C------CCCCeEEEEcCCcchHHHHHHHH------HcC-----CcEEEEeCCCCCCCChHHHHHHHhccCCCCceEE
Q 015729           81 --L------SPGDRIISFLIGQFSLLWIDQQQ------RLN-----FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAI  141 (401)
Q Consensus        81 --~------~~gd~vl~~~~~~~~~~~~~~~~------~~g-----~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i  141 (401)
                        .      ...++|+..+.+||+..+..+..      ..+     .+++.++.+     |++++++.+.    +++++|
T Consensus       118 r~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~----~~~aai  188 (403)
T PRK05093        118 RRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFN-----DLAAVKAVID----DHTCAV  188 (403)
T ss_pred             HHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCC-----CHHHHHHHhc----CCeEEE
Confidence              1      12457888888888875422111      001     122333222     7899999886    357888


Q ss_pred             EEEecCCCcccccc----hHHHHHHhhhcCCCcEEEEecccccCcc---eec--cCcccceEEEecCCCcccCCCcceEE
Q 015729          142 CIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---DFR--MDEWGIDVALTGSQKALSLPTGMGIV  212 (401)
Q Consensus       142 ~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~~~--~~~~~~di~~~s~~K~l~g~~g~G~l  212 (401)
                      +++.++++.|...+    +++|.++|++  +|+++|+|++|+....   .+.  .....+|+.  |.+|.++++.++|++
T Consensus       189 iiep~~~~gg~~~~~~~~l~~l~~l~~~--~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--s~sK~l~~G~rig~v  264 (403)
T PRK05093        189 VVEPIQGEGGVIPATPEFLQGLRELCDQ--HNALLIFDEVQTGMGRTGDLFAYMHYGVTPDIL--TSAKALGGGFPIGAM  264 (403)
T ss_pred             EEecccCCCCCccCCHHHHHHHHHHHHH--cCCEEEEechhhCCCCCccchhhhhcCCCCCEE--EecccccCCcceEEE
Confidence            88855544455433    8899999999  9999999999873211   111  122236655  456999766668999


Q ss_pred             EecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc
Q 015729          213 CASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW  292 (401)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~  292 (401)
                      +.++++.+.+.....                +  ..++.++..++++.++++.+...   +..++++++.+++.+.|+++
T Consensus       265 v~~~~i~~~l~~~~~----------------~--~t~~~~~~~~~aa~a~L~~~~~~---~~~~~~~~~~~~l~~~L~~~  323 (403)
T PRK05093        265 LTTAEIASHFKVGTH----------------G--STYGGNPLACAVAEAVFDIINTP---EVLEGVKARRQRFVDGLQKI  323 (403)
T ss_pred             EEcHHHHhhcCCCCC----------------C--CCCCCCHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHH
Confidence            999998777753211                1  12234555667777888776543   45678888999999999886


Q ss_pred             CC--ccccCCCccCCceeEEEEcCCCC--CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          293 GL--KNCTQKEEWFSDTVTAVIVPSHI--NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       293 g~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      +.  .+...  ....+.++++.++.+.  +..+++..|.++ ||.+.++    ..+++|+++...++++++++++++|++
T Consensus       324 ~~~~~~~~~--~~~~G~~~~~~l~~~~~~~~~~~~~~l~~~-Gv~v~~~----g~~~lRl~~~~~~~~~~i~~~~~~l~~  396 (403)
T PRK05093        324 NQKYGVFSE--IRGMGLLIGAELKPQYKGRARDFLNAAAEE-GVMVLVA----GPDVLRFAPSLVIEEADIDEGLARFEK  396 (403)
T ss_pred             HhhCCCeEe--EeeCceEEEEEecCcchhHHHHHHHHHHHC-CeEEecC----CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            32  22211  1123567778775432  456888888876 9988753    236899987777899999999999999


Q ss_pred             HHHhc
Q 015729          369 ILKDV  373 (401)
Q Consensus       369 ~l~~~  373 (401)
                      +++++
T Consensus       397 ~l~~~  401 (403)
T PRK05093        397 AVAKV  401 (403)
T ss_pred             HHHHh
Confidence            88653

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.90  E-value=1.1e-20  Score=181.00  Aligned_cols=306  Identities=18%  Similarity=0.205  Sum_probs=205.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc---------CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEE
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT---------LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDV  112 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~---------~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~  112 (401)
                      ....++++.+++++|.+.   +++++|||+|+..++.++         +++||+|+++.++|.+..  ......|++++.
T Consensus        63 ~~~~~fe~~lA~~~g~~~---~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~--~~v~~~G~~pv~  137 (438)
T PRK15407         63 RFNDAFEKKLAEFLGVRY---ALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTV--NPIIQNGLVPVF  137 (438)
T ss_pred             hhHHHHHHHHHHHhCCCe---EEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHH--HHHHHcCCEEEE
Confidence            447799999999999864   888999999999887653         589999999999877664  345668999999


Q ss_pred             EeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceec--cCc
Q 015729          113 VESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR--MDE  189 (401)
Q Consensus       113 v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~--~~~  189 (401)
                      ++++. .+.+|++.++++++.    ++++|++++   ++|...++++|.++|++  +|++||+|++|+.|+..-+  ...
T Consensus       138 vdvd~~~~~id~~~le~~i~~----~tkaVi~~~---~~G~p~dl~~I~~la~~--~gi~vIeDaa~a~G~~~~g~~~G~  208 (438)
T PRK15407        138 VDVELPTYNIDASLLEAAVSP----KTKAIMIAH---TLGNPFDLAAVKAFCDK--HNLWLIEDNCDALGSTYDGRMTGT  208 (438)
T ss_pred             EecCCCcCCcCHHHHHHHcCc----CCeEEEEeC---CCCChhhHHHHHHHHHH--CCCEEEEECccchhhhcCCeeeec
Confidence            99874 567899999998863    669999987   46788899999999999  9999999999999876533  122


Q ss_pred             ccceEEEec--CCCcccCCCcceEEEecHHHHH-HhccCCCCccc--------------c--chHH----HHHHh---hc
Q 015729          190 WGIDVALTG--SQKALSLPTGMGIVCASPKALE-ASKTAKSVRVF--------------F--DWKD----YIKFY---NL  243 (401)
Q Consensus       190 ~~~di~~~s--~~K~l~g~~g~G~l~~~~~~~~-~~~~~~~~~~~--------------~--~~~~----~~~~~---~~  243 (401)
                      .| |+.++|  ..|.+.++.| |+++++++.+. ++......+.-              +  ....    +...+   ..
T Consensus       209 ~g-d~~~fSf~~~k~~~~geG-G~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (438)
T PRK15407        209 FG-DIATLSFYPAHHITMGEG-GAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHL  286 (438)
T ss_pred             cC-ceEEEeCCCCCCccccCc-eEEEECCHHHHHHHHHHHHhCccccccccccccccccccccccccccccccccccccc
Confidence            23 666555  4577876776 88887765533 22221110000              0  0000    00000   01


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-C-Ccccc-CCCccCCceeEEEEcCC--CCC
Q 015729          244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-G-LKNCT-QKEEWFSDTVTAVIVPS--HIN  318 (401)
Q Consensus       244 g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g-~~~~~-~~~~~~~~~~~~~~~~~--~~~  318 (401)
                      |.  ....+     -+.+|+...+-..++...++.+++++++.+.|.+. + +.+.. +.....++..+.+.+++  +.+
T Consensus       287 G~--n~rms-----el~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  359 (438)
T PRK15407        287 GY--NLKIT-----DMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVKEDAGFT  359 (438)
T ss_pred             cc--ccCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEECCcCCCC
Confidence            11  11122     34555555444456788899999999999999875 3 22221 11222233344555543  346


Q ss_pred             HHHHHHHHHhhCCeEEccCCC-C-----------C------------CCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          319 SSEIVRRAWQRYNLSLGLGLN-K-----------V------------AGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~-~-----------~------------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      ..++.+.|.++ ||.++..+. +           .            ....+.+.++..++++|+++++++|+++++
T Consensus       360 Rd~l~~~L~~~-GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~~  435 (438)
T PRK15407        360 RVELVKYLEEN-KIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFFG  435 (438)
T ss_pred             HHHHHHHHHHC-CCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence            78999999876 887654331 0           0            112377767778899999999999999875

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.90  E-value=2e-21  Score=182.97  Aligned_cols=283  Identities=15%  Similarity=0.107  Sum_probs=190.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDW  117 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~  117 (401)
                      ......+++++++++.|.+.   .++++||++|+..++ +++++||+|+++.+.|++..  +.......|++++.++.. 
T Consensus        50 ~~pt~~~le~~la~l~g~~~---~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-  124 (366)
T PRK08247         50 GNPTRGVLEQAIADLEGGDQ---GFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTA-  124 (366)
T ss_pred             CCchHHHHHHHHHHHhCCCc---EEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCC-
Confidence            34567899999999999976   477888899998765 57899999999999877654  445566789999988753 


Q ss_pred             CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEe
Q 015729          118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT  197 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~  197 (401)
                          |++++++++++    ++++|++++|+||+|...++++|.++|++  +|+++|+|++++.+.... ....++|+++.
T Consensus       125 ----d~~~l~~~i~~----~tklv~le~P~NP~~~~~dl~~I~~la~~--~g~~lIvD~t~~~~~~~~-p~~~g~di~i~  193 (366)
T PRK08247        125 ----SLKAIEQAITP----NTKAIFIETPTNPLMQETDIAAIAKIAKK--HGLLLIVDNTFYTPVLQR-PLEEGADIVIH  193 (366)
T ss_pred             ----CHHHHHHhccc----CceEEEEECCCCCCCcHHHHHHHHHHHHH--cCCEEEEECCCccccccC-chhcCCcEEEe
Confidence                89999999874    56999999999999999999999999999  999999999986543222 22457899999


Q ss_pred             cCCCcccCCCc--ceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHH
Q 015729          198 GSQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENV  274 (401)
Q Consensus       198 s~~K~l~g~~g--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~  274 (401)
                      |.+|+++|+.+  .|+++.+ +++.+++...+             .. .+    ...+......+..+++     .+...
T Consensus       194 S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~-------------~~-~g----~~~s~~~a~l~~~~l~-----tl~~r  250 (366)
T PRK08247        194 SATKYLGGHNDVLAGLVVAKGQELCERLAYYQ-------------NA-AG----AVLSPFDSWLLIRGMK-----TLALR  250 (366)
T ss_pred             ecceeccCCCceeeeEEecChHHHHHHHHHHH-------------Hh-cC----CCCChHHHHHHHhccC-----cHHHH
Confidence            99999976543  4788876 45544443210             00 11    1233322222222222     24556


Q ss_pred             HHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhh-------------CCeEEccCCC-
Q 015729          275 IERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQR-------------YNLSLGLGLN-  339 (401)
Q Consensus       275 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------------~~i~v~~g~~-  339 (401)
                      +++.+++++.+.+.|++. ++..... ++  .+.++.|.++ +   .+...++.+.             ..+.+.|+.. 
T Consensus       251 ~~~~~~~a~~l~~~L~~~p~v~~v~~-P~--~gg~~sf~~~-~---~~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~  323 (366)
T PRK08247        251 MRQHEENAKAIAAFLNEQPGVTDVLY-PG--RGGMLSFRLQ-D---EEWVNPFLKSLKLITFAESLGGVESFITYPATQT  323 (366)
T ss_pred             HHHHHHHHHHHHHHHHhCCCeeEEec-CC--cCcEEEEEEC-C---HHHHHHHHHcCCcceEccCCCCCceEEECCcccc
Confidence            777899999999999986 6553211 11  2346667773 2   2222222221             1233333311 


Q ss_pred             ------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          340 ------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       340 ------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                                  ...++.+||++..    |+++.+++-|+.+|+.
T Consensus       324 ~~~~~~~~r~~~gi~~~~~R~svGl----E~~~dl~~dl~~al~~  364 (366)
T PRK08247        324 HADIPEEIRIANGVCNRLLRFSVGI----ENVEDLIADLKQAFKQ  364 (366)
T ss_pred             cccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHhh
Confidence                        0123568997644    6777788888777754

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.90  E-value=9.2e-21  Score=170.35  Aligned_cols=305  Identities=16%  Similarity=0.112  Sum_probs=215.7

Q ss_pred             HHHHHHHHHHHHHHhc----CC--CCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEe
Q 015729           41 PALTKTLLEDIKKIFK----TT--SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVE  114 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g----~~--~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~  114 (401)
                      ...+.++...+.++.+    .+  .+.++++++|.|.++..++..++++||.|++....+.+-  ....+..|++++.|+
T Consensus        99 s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~A--L~s~~a~gv~~ipv~  176 (472)
T KOG0634|consen   99 SSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSA--LQSMEALGVKIIPVK  176 (472)
T ss_pred             ccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHH--HHhccccCceEEecc
Confidence            3446677777777665    22  224699999999999999999999999999988765543  355688899999999


Q ss_pred             CCCCCCCChHHHHHHHhc-cCC----CCceEE-EEEecCCCcccccch---HHHHHHhhhcCCCcEEEEecccccCcce-
Q 015729          115 SDWGEGAKLDVLASKLAA-DTA----HTIKAI-CIVHNETATGVTNNL---SKVRKLLDEYRHPALFLVDGVSSICAID-  184 (401)
Q Consensus       115 ~~~~~~~d~~~le~~~~~-~~~----~~~~~i-~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~li~D~a~~~~~~~-  184 (401)
                      ++.++ +++|.|++.+++ ++.    .+++++ .+...+||||..++.   ++|.++|++  |+.+||.|+.|.+..+. 
T Consensus       177 md~~G-i~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArK--yDfLIVeDdpYy~Lq~~~  253 (472)
T KOG0634|consen  177 MDQDG-IDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARK--YDFLIVEDDPYYFLQMNT  253 (472)
T ss_pred             ccCCC-CCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHH--cCEEEEecCccceeeccc
Confidence            98876 799999999875 221    235555 445668999999986   469999999  99999999987543221 


Q ss_pred             -------------------------eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHH
Q 015729          185 -------------------------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIK  239 (401)
Q Consensus       185 -------------------------~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (401)
                                               .+.+-.|..|-.-|.+|.++.+.++||+.+++..++++.....            
T Consensus       254 y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~ril~~ae------------  321 (472)
T KOG0634|consen  254 YNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLKRILDLAE------------  321 (472)
T ss_pred             cCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHHHHhhhcc------------
Confidence                                     1122235667778999998766788999999988777654211            


Q ss_pred             HhhcCCCCCCCCcHHHHHHHHHHHHHHHHhc----HHHHHHHHHHHHHHHHHHHHH-c--C-CccccCCCccCCceeEEE
Q 015729          240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEG----LENVIERHRRLGKATRLAVEA-W--G-LKNCTQKEEWFSDTVTAV  311 (401)
Q Consensus       240 ~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g----~~~~~~~~~~~~~~l~~~L~~-~--g-~~~~~~~~~~~~~~~~~~  311 (401)
                         ..   ...|+..+..-+-+.+....++|    +..++..+..++..+..+|.+ +  + +++.++    ..+.++|+
T Consensus       322 ---~~---t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P----~aGmFiwv  391 (472)
T KOG0634|consen  322 ---VA---TSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPP----KAGMFIWV  391 (472)
T ss_pred             ---ee---ecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecC----CcceEEEE
Confidence               01   11133333334455555555544    455666677777778888877 3  3 344443    57789999


Q ss_pred             EcC-------CCCC-HHHHHHHHHhhCCeEEccCCC---C---CCCc-EEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          312 IVP-------SHIN-SSEIVRRAWQRYNLSLGLGLN---K---VAGK-VFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       312 ~~~-------~~~~-~~~l~~~L~~~~~i~v~~g~~---~---~~~~-~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ++|       +.++ .+++...+..++||.+.+|..   .   -.++ ++|+++ +..+.++++..++++..++++.
T Consensus       392 ~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~-a~a~~e~l~~g~~rf~~~ike~  467 (472)
T KOG0634|consen  392 EIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSI-AFAEPEKLDEGIERFGSVIKEH  467 (472)
T ss_pred             EecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEe-ecCCHHHHHHHHHHHHHHHHHH
Confidence            997       5555 566666666677999998843   1   1133 699954 4578889999999999999863

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.90  E-value=3.7e-21  Score=192.62  Aligned_cols=321  Identities=14%  Similarity=0.065  Sum_probs=208.6

Q ss_pred             cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC--------CCCCeEEEEcCCcchHHHHHHHHHcCCcE
Q 015729           39 AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--------SPGDRIISFLIGQFSLLWIDQQQRLNFNV  110 (401)
Q Consensus        39 ~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~  110 (401)
                      ++.+.+.++++.+++++|.+..  .+..++|+.|..+.+.++-        ...++|+++...|+++.  ..+...|+++
T Consensus       540 G~lq~i~elq~~l~eLtGmd~~--Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNp--asa~~~GieV  615 (954)
T PRK12566        540 GYRAMIDELEAWLCAITGFDAI--CMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNP--ASAQMAGMRV  615 (954)
T ss_pred             CHHHHHHHHHHHHHHHHCCCeE--eecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCH--HHHHHCCCEE
Confidence            4567788999999999999873  2445566766645443321        12356777777776553  3366789999


Q ss_pred             EEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceec-cCc
Q 015729          111 DVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR-MDE  189 (401)
Q Consensus       111 ~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~-~~~  189 (401)
                      +.++++.++.+|+++|++++++.. .++++|+++++++..+...++++|.++|++  +|+++++|+++..+...++ ..+
T Consensus       616 v~Vp~D~~G~iDle~L~a~I~~~~-~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~--~Galv~vDgA~~~a~~~l~~Pg~  692 (954)
T PRK12566        616 VIVECDPDGNVDLDDLKAKAAAAG-DRLSCLMITYPSTHGVYEEGIREICEVVHQ--HGGQVYMDGANLNAQVGLARPAD  692 (954)
T ss_pred             EEeccCCCCCcCHHHHHHHhhccC-CCEEEEEEEecCcCceecchHHHHHHHHHH--cCCEEEEEeeChhhccCCCChhh
Confidence            999999888999999999997433 467888899888776666679999999999  9999999999986655554 467


Q ss_pred             ccceEEEecCCCcccCCCcceEEEecH-HHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHH
Q 015729          190 WGIDVALTGSQKALSLPTGMGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFE  268 (401)
Q Consensus       190 ~~~di~~~s~~K~l~g~~g~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~  268 (401)
                      +|+|++.+++||||++|.|.|..++.+ ...+.+.+........+...  ++-..|.  ..+....+..-+..++.++..
T Consensus       693 ~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G--~~~r~ga--~S~~~~gsa~~l~~A~~Yi~~  768 (954)
T PRK12566        693 IGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEG--PDPNNGA--VSAAPWGSASILPISWMYIAM  768 (954)
T ss_pred             cCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCC--CCCCCCc--eeecccchHHHHHHHHHHHHH
Confidence            899999999999998776655444444 22222222111000000000  0001121  111112222224555566655


Q ss_pred             hcHH--HHHHHHHHHHHHHHHHHHHcCCccccCCC-cc--CCceeEEEEcC--CCCCHHHHHHHHHhhCCeEEccCCCCC
Q 015729          269 EGLE--NVIERHRRLGKATRLAVEAWGLKNCTQKE-EW--FSDTVTAVIVP--SHINSSEIVRRAWQRYNLSLGLGLNKV  341 (401)
Q Consensus       269 ~g~~--~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~--~~~~~~~~~~~--~~~~~~~l~~~L~~~~~i~v~~g~~~~  341 (401)
                      .|.+  +..+....++.|+++.|.+ ++++..... ..  ....+....+|  .+.+..++.++|. .+||.....+.+ 
T Consensus       769 lG~eLk~aa~~ailnAnYla~rL~~-~~~v~~~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~-d~Gihapt~~fP-  845 (954)
T PRK12566        769 MGPQLADASEVAILSANYLANQLGG-AFPVLYRGRNERVAHECILDLRPLKAQTGISEEDVAKRLM-DYGFHAPTMSFP-  845 (954)
T ss_pred             HCHHHHHHHHHHHHHHHHHHHHhHh-hCCCCcCCCCCCeeeEEEEEccccccccCCCHHHHHHHHH-HCCcEEeEEeec-
Confidence            5644  3334446789999999977 343332211 11  11112222233  2467789999998 458875443333 


Q ss_pred             CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          342 AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       342 ~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ..+.+||++..+.+++|+|+++++++.+.+|+
T Consensus       846 v~~~LmIepTE~eskeEIDrf~eAL~~I~~e~  877 (954)
T PRK12566        846 VPGTLMVEPTESESKAELDRFVEAMLSIRAEI  877 (954)
T ss_pred             cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999988875

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.90  E-value=5.8e-21  Score=180.87  Aligned_cols=289  Identities=13%  Similarity=0.063  Sum_probs=197.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDW  117 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~  117 (401)
                      ......+++++++++.|.+.   +++++||++|+..++.+++++||+|+++.+.|.+..  +...+...|++++.++.. 
T Consensus        63 ~~pt~~~Le~~lA~l~g~~~---~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~-  138 (394)
T PRK07050         63 ATPTSLALAQRLAEIEGGRH---ALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPL-  138 (394)
T ss_pred             CCHHHHHHHHHHHHHhCCCe---EEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCC-
Confidence            44557899999999998753   899999999999999999999999999999877655  334667789999988643 


Q ss_pred             CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEe
Q 015729          118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT  197 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~  197 (401)
                          +.++++++++    +++++|++++|+||+|...++++|.++|++  +|+++|+|++++.+.. ....+.|+|+++.
T Consensus       139 ----~~~~l~~~i~----~~tklV~le~p~Np~~~~~di~~I~~ia~~--~gi~livD~a~a~~~~-~~~l~~GaDi~v~  207 (394)
T PRK07050        139 ----IGAGIADLIQ----PNTRLIWLEAPGSVTMEVPDVPAITAAARA--RGVVTAIDNTYSAGLA-FKPFEHGVDISVQ  207 (394)
T ss_pred             ----CHHHHHHhcC----CCCeEEEEECCCCCCccHhhHHHHHHHHHH--cCCEEEEECCcccccc-cCHHHcCCeEEEE
Confidence                4577888886    367999999999999999999999999999  9999999999987754 3334567899999


Q ss_pred             cCCCcccCCCc--ceEEEe-cHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHH
Q 015729          198 GSQKALSLPTG--MGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENV  274 (401)
Q Consensus       198 s~~K~l~g~~g--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~  274 (401)
                      |.+|+++|..+  .|++++ ++++.+++...             +. ..|    .+.+..   ....+++.+.  .+..+
T Consensus       208 S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~-------------~~-~~G----~~~~~~---~a~l~lr~l~--tl~~R  264 (394)
T PRK07050        208 ALTKYQSGGSDVLMGATITADAELHAKLKLA-------------RM-RLG----IGVSAD---DCSLVLRGLP--SLQVR  264 (394)
T ss_pred             ECCceecCCCCeeEEEEEECCHHHHHHHHHH-------------HH-hcC----CCCCHH---HHHHHHcCCC--cHHHH
Confidence            99999976654  366665 56665555421             11 012    123332   2222322211  24557


Q ss_pred             HHHHHHHHHHHHHHHHHc-CCcc-c----cCCC--------ccCCceeEEEEcCCCC---CHHHHHHHHHhhCCeEEccC
Q 015729          275 IERHRRLGKATRLAVEAW-GLKN-C----TQKE--------EWFSDTVTAVIVPSHI---NSSEIVRRAWQRYNLSLGLG  337 (401)
Q Consensus       275 ~~~~~~~~~~l~~~L~~~-g~~~-~----~~~~--------~~~~~~~~~~~~~~~~---~~~~l~~~L~~~~~i~v~~g  337 (401)
                      +++..+++..+.+.|++. ++.. .    ...+        ....+.++.|.+..+.   +..++.+.|. ..++.+..|
T Consensus       265 l~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~~l~-~~~~~~s~G  343 (394)
T PRK07050        265 LAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAFVEALE-LFAIGWSWG  343 (394)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHHHHHHcCC-CCeeccccC
Confidence            777888888899999875 3321 1    1000        0124567888885332   2445555554 235444333


Q ss_pred             CC-----------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          338 LN-----------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       338 ~~-----------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      ..                 ...++.+|||+..    ||.|.+++-|.++|+
T Consensus       344 ~~~sl~~~~~~~~~~~~~~~~~~~~iR~svGl----E~~~dl~~dl~~al~  390 (394)
T PRK07050        344 GACSLAMPYDVASMRTAKWPHRGTLVRLYIGL----EDEADLIADLEQALE  390 (394)
T ss_pred             CccceEeeCcccccchhhcCCCCCEEEEEeCc----CCHHHHHHHHHHHHH
Confidence            11                 0123679998654    666677777766665

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.90  E-value=8.1e-21  Score=177.22  Aligned_cols=337  Identities=20%  Similarity=0.126  Sum_probs=234.6

Q ss_pred             CCCCcccccCC------CcCChHHHHHHHccCcCC----CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHH
Q 015729            6 APGKNHLFVPG------PVHIPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWES   75 (401)
Q Consensus         6 ~~~~~~~~~~~------p~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~   75 (401)
                      .-|+.|++.-.      -..-+|.|+++++++...    +..+...+...++-++|.+.+..+....+.++++|++|++.
T Consensus        53 vdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~  132 (447)
T COG0160          53 VDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEA  132 (447)
T ss_pred             CCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHH
Confidence            44666776654      255678888888885432    22233336677788888887776544558999999999999


Q ss_pred             HHhc--cCCCCCeEEEEcCCcchHHHHHHHHH-------c--C---CcEEEEeCCCCCC--C----------ChHHHHHH
Q 015729           76 ALTN--TLSPGDRIISFLIGQFSLLWIDQQQR-------L--N---FNVDVVESDWGEG--A----------KLDVLASK  129 (401)
Q Consensus        76 ~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~-------~--g---~~~~~v~~~~~~~--~----------d~~~le~~  129 (401)
                      ++.-  ....+..|+....+||+.....+.-.       .  +   ..+..+|.+...+  +          ..+.+++.
T Consensus       133 AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~  212 (447)
T COG0160         133 AIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERA  212 (447)
T ss_pred             HHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHH
Confidence            9833  34556789999999998764322211       1  1   1355666543221  1          23445664


Q ss_pred             Hhc--cCCCCceEEEEEecCCCcccccc----hHHHHHHhhhcCCCcEEEEecccccCcc---eeccCcc--cceEEEec
Q 015729          130 LAA--DTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---DFRMDEW--GIDVALTG  198 (401)
Q Consensus       130 ~~~--~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~~~~~~~--~~di~~~s  198 (401)
                      +..  ...+++.++++..++...|.+.+    ++++.++|++  +|+++|+|++|+....   .+.++..  .+|+++++
T Consensus       213 i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~--~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~a  290 (447)
T COG0160         213 LFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCRE--HGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLA  290 (447)
T ss_pred             HHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHH--cCCEEEEeccccCCCccccchhhhhcCCCCCEEEec
Confidence            433  11246899999999999999986    7889999999  9999999999975432   2333333  47888887


Q ss_pred             CCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 015729          199 SQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERH  278 (401)
Q Consensus       199 ~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~  278 (401)
                        |.++++.++|.++.++++.+ ..+...                  ..++.-++..+++..+.|+.+.++   ++.++.
T Consensus       291 --K~ig~G~Pl~avv~r~ei~~-~~~g~~------------------~~Tf~GNpva~Aaa~AvL~vie~e---~L~~~a  346 (447)
T COG0160         291 --KSLGGGLPLSAVVGRAEIMD-WPPGGH------------------GGTFGGNPVACAAALAVLDVIEEE---NLLERA  346 (447)
T ss_pred             --ccccCCCceeEEeccHHhcc-cCCccc------------------CCCCCcCHHHHHHHHHHHHHHHHc---cHHHHH
Confidence              99988888999999999877 433211                  112446667778888888888775   588899


Q ss_pred             HHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcCCC-----CC---HHHHHHHHHhhCCeEEccCCCCCCCcEEEE
Q 015729          279 RRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSH-----IN---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRI  348 (401)
Q Consensus       279 ~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri  348 (401)
                      .+..+++++.|+++  .++....  ....+.++.+++-+.     .+   ...+++.++++ |+.+..+..  .++.+||
T Consensus       347 ~~~G~~l~~~L~~l~~~~~~Igd--VRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~-Glil~~~G~--~~nviRi  421 (447)
T COG0160         347 AELGEYLRDRLEELQEKHPLIGD--VRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFER-GLLLLTCGP--HGNVLRI  421 (447)
T ss_pred             HHHHHHHHHHHHHHHhhcCceec--ccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHc-CCEEeccCC--CCcEEEE
Confidence            99999999999987  5554443  334566777776321     12   34678888877 866543321  2689999


Q ss_pred             eecccCCHHHHHHHHHHHHHHHHhc
Q 015729          349 GHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       349 ~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .+.-.++++++|+++++|++++++.
T Consensus       422 ~PPL~is~e~~d~~l~il~~al~~~  446 (447)
T COG0160         422 LPPLTISDEELDEGLDILEEALKEA  446 (447)
T ss_pred             eCCcccCHHHHHHHHHHHHHHHHhh
Confidence            9988999999999999999998763

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.90  E-value=2.3e-21  Score=185.00  Aligned_cols=159  Identities=18%  Similarity=0.168  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      ......+++.++++.|.+.   .++++||+.|+..++.+++++||+|+++.+.|.+..  +...++..|++++.++..  
T Consensus        63 ~p~~~~Le~~lA~leg~~~---al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~--  137 (431)
T PRK08248         63 NPTTDVFEKRIAALEGGIG---ALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPS--  137 (431)
T ss_pred             CchHHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCC--
Confidence            3457789999999999754   788999999999999888999999999998776654  445677889999999763  


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                         |++++++++++    ++++|++++++||||.+.|+++|.++|++  +|+++|+|++++.+....+ .++++|+++.|
T Consensus       138 ---d~e~l~~ai~~----~tklV~l~sp~NPtG~v~di~~I~~la~~--~gi~vIvD~t~a~~~~~~p-l~~gaDivv~S  207 (431)
T PRK08248        138 ---DPENFEAAITD----KTKALFAETIGNPKGDVLDIEAVAAIAHE--HGIPLIVDNTFASPYLLRP-IEHGADIVVHS  207 (431)
T ss_pred             ---CHHHHHHhcCC----CCeEEEEECCCCCCCcccCHHHHHHHHHH--cCCEEEEeCCCCccccCCh-hHcCCCEEEEc
Confidence               79999999874    56999999999999999999999999999  9999999999875433223 25789999999


Q ss_pred             CCCcccCCC-cceEEEe
Q 015729          199 SQKALSLPT-GMGIVCA  214 (401)
Q Consensus       199 ~~K~l~g~~-g~G~l~~  214 (401)
                      .+|+++++. .+|.+++
T Consensus       208 ~tK~lgg~g~~~Gg~v~  224 (431)
T PRK08248        208 ATKFIGGHGTSIGGVIV  224 (431)
T ss_pred             CccccCCCCCceEEEEE
Confidence            999996543 2455554

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.90  E-value=1.1e-20  Score=181.40  Aligned_cols=303  Identities=17%  Similarity=0.141  Sum_probs=203.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--C------CCCCeEEEEcCCcchHHHHHHHHHcC------
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--L------SPGDRIISFLIGQFSLLWIDQQQRLN------  107 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~------~~gd~vl~~~~~~~~~~~~~~~~~~g------  107 (401)
                      +...++.++|.+...... +.+.|+++|++|++.++...  .      ....+|+....+||+.....+.....      
T Consensus        85 ~~~~~la~~l~~~~p~~~-~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~  163 (423)
T PRK05964         85 EPAERLAQRLVALTPGGL-DHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHAL  163 (423)
T ss_pred             HHHHHHHHHHHHhCCCCC-CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCcccccc
Confidence            445578888888764222 35999999999999988431  1      22367999999998876322211000      


Q ss_pred             -----CcEEEEeCCCCC--CCChHHHHHHHhccCCCCceEEEEEe-cCCCcccccc----hHHHHHHhhhcCCCcEEEEe
Q 015729          108 -----FNVDVVESDWGE--GAKLDVLASKLAADTAHTIKAICIVH-NETATGVTNN----LSKVRKLLDEYRHPALFLVD  175 (401)
Q Consensus       108 -----~~~~~v~~~~~~--~~d~~~le~~~~~~~~~~~~~i~~~~-~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D  175 (401)
                           ..+..++.+.+.  ..+++++++.+++.. +++.+|++.. +++..|...+    +++|.++|++  +|+++|+|
T Consensus       164 ~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~-~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~--~g~llI~D  240 (423)
T PRK05964        164 YTPLLFEQVTAPFPPDGYEQATLDALEALLEKHA-GEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDR--HGVLLIFD  240 (423)
T ss_pred             ccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCC-CcEEEEEEecccccCCCcccCCHHHHHHHHHHHHH--cCCEEEEe
Confidence                 122334433221  112788888887544 5678888887 5777887764    8889999999  99999999


Q ss_pred             cccccCcc-----eeccCcccceEEEecCCCcccCC-CcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCC
Q 015729          176 GVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY  249 (401)
Q Consensus       176 ~a~~~~~~-----~~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  249 (401)
                      ++|.....     .++.....+|+++++  |+++++ .++|+++.++++.+.+.......          .+..++  ++
T Consensus       241 Ev~tg~gr~G~~~a~~~~~v~pDi~~~~--K~l~gG~~p~~av~~~~~i~~~~~~~~~~~----------~~~~~~--T~  306 (423)
T PRK05964        241 EIATGFGRTGTLFACEQAGVSPDIMCLS--KGLTGGYLPLAATLCTAEIFEAFYSDDRAK----------AFMHSP--SY  306 (423)
T ss_pred             chhhCCCcCcchhHHHhcCCCCCeeeee--hhhhcCcccceEEEEcHHHHHhhhcCCccc----------ccccCC--CC
Confidence            99863211     112223357877665  999776 57899999999988764310000          000011  23


Q ss_pred             CCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCC---CHHHHHHH
Q 015729          250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHI---NSSEIVRR  325 (401)
Q Consensus       250 ~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~  325 (401)
                      +.++..++++.++++.+.+++   ..++..++.+++++.|+++ .++....  ....+.++.+.+.+..   ....+.+.
T Consensus       307 ~~np~~~aaa~a~l~~l~~~~---~~~~~~~~g~~l~~~l~~l~~~~~i~~--vrg~Gl~~~i~l~~~~~~~~~~~l~~~  381 (423)
T PRK05964        307 TANPLACAAANASLDLFEDEP---VLERVAALSAGLAEGLEPFRDLPGVAD--VRVLGAIGAVELDRPVLERDGPALRAF  381 (423)
T ss_pred             CcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhhccCCCeEE--eecccEEEEEEeccCcchhHHHHHHHH
Confidence            466777888888999887653   6678888899999999886 4433221  1134556677774321   25578888


Q ss_pred             HHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          326 AWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       326 L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      |.++ ||.+.+.     ++.+|+++..++|++|||+++++++++++++
T Consensus       382 l~~~-Gv~v~~~-----~~~lR~~p~l~~t~edId~~v~~l~~al~~~  423 (423)
T PRK05964        382 ALER-GVLLRPL-----GNTIYLMPPYIITAEELDRITDAIVEVADEL  423 (423)
T ss_pred             HHHC-CeEEEec-----CCEEEEeCCcccCHHHHHHHHHHHHHHHhhC
Confidence            8766 9998643     3589999998999999999999999999764

>PLN02368 alanine transaminase

Probab=99.90  E-value=1.8e-21  Score=184.76  Aligned_cols=249  Identities=12%  Similarity=0.045  Sum_probs=172.6

Q ss_pred             ccHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccC-CCCCeEEEEcCCcchHHHHHHHHHcCCcEE
Q 015729           38 PAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTL-SPGDRIISFLIGQFSLLWIDQQQRLNFNVD  111 (401)
Q Consensus        38 ~~~~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~  111 (401)
                      |.......++|+.+++++    |.+ .+++|++|+|+++|+..++.+++ ++||+|++++|+|+.+.  ..++..|++++
T Consensus       103 Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~--~~~~~~g~~~v  180 (407)
T PLN02368        103 YSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYS--ATISLLGGTLV  180 (407)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHH--HHHHHcCCEEE
Confidence            333445667888888877    533 34569999999999999988887 79999999999887664  56778899999


Q ss_pred             EEeCCCC--CCCChHHHHHHHhcc--CCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEEEEecccccCcc-
Q 015729          112 VVESDWG--EGAKLDVLASKLAAD--TAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAI-  183 (401)
Q Consensus       112 ~v~~~~~--~~~d~~~le~~~~~~--~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~~~~-  183 (401)
                      .++++.+  +.+|++++++.+++.  ...+++++++++|+||||.+++   +++|.++|++  +|++||+|++|..... 
T Consensus       181 ~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~--~~~~II~DE~Y~~l~y~  258 (407)
T PLN02368        181 PYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQ--ERLVLLGDEVYQQNIYQ  258 (407)
T ss_pred             EEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHH--cCCEEEEEccccccccC
Confidence            9998753  578999999998631  1126799999999999999997   4567788888  9999999999864321 


Q ss_pred             ---ee-c-------cC----cccceEEEecCCCcccC--CCcceEEEe---cHHHHHHhccCCCCccccchHHHHHHhhc
Q 015729          184 ---DF-R-------MD----EWGIDVALTGSQKALSL--PTGMGIVCA---SPKALEASKTAKSVRVFFDWKDYIKFYNL  243 (401)
Q Consensus       184 ---~~-~-------~~----~~~~di~~~s~~K~l~g--~~g~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (401)
                         ++ .       ..    .....+++.|.+|.+.+  +.++||+++   ++++++.+.....                
T Consensus       259 ~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~----------------  322 (407)
T PLN02368        259 DERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVAS----------------  322 (407)
T ss_pred             CCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhc----------------
Confidence               11 1       00    12246788999999743  344699984   7777666653210                


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHH---------HhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEc
Q 015729          244 GTFWPYTPSIQLLYGLRAALDLIF---------EEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV  313 (401)
Q Consensus       244 g~~~~~~~~~~~~~a~~~al~~~~---------~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~  313 (401)
                         ..++++.....++.+++..-.         ....++..+.++++++.+.+.|+++ |+.+..++    ...++|.++
T Consensus       323 ---~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~----Gafy~~~~i  395 (407)
T PLN02368        323 ---IALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTE----GAMYSFPQI  395 (407)
T ss_pred             ---ccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCC----eeeEeccCC
Confidence               011244444444444543100         0112446788899999999999997 87776553    334555444

>PLN02624 ornithine-delta-aminotransferase

Probab=99.89  E-value=5.8e-21  Score=185.02  Aligned_cols=311  Identities=19%  Similarity=0.196  Sum_probs=206.7

Q ss_pred             hHHHHHHHccCcCCC--CC-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC---------CCCC-eE
Q 015729           21 PDQVIRAMNRNNEDY--RS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL---------SPGD-RI   87 (401)
Q Consensus        21 ~~~v~~a~~~~~~~~--~~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~---------~~gd-~v   87 (401)
                      +|.|++++.+.....  .. ....+...++.++++++++.+   .++++++|++|++.++....         .+++ +|
T Consensus        93 ~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~L~~~~~~~---~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~i  169 (474)
T PLN02624         93 HPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMFGYD---MVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAII  169 (474)
T ss_pred             CHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHhhcCCC---eEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEE
Confidence            677777776644321  11 122455678999999988643   48999999999999884211         1133 56


Q ss_pred             EEEcCCcchHHHHHHHHHcC-----------CcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc-
Q 015729           88 ISFLIGQFSLLWIDQQQRLN-----------FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-  155 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~g-----------~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~-  155 (401)
                      +....+||+.....+.....           ..+..++.+     |++.+++.++... .++++|++..+++++|.+.| 
T Consensus       170 i~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~-~~iaaiiiEpv~~~~G~v~p~  243 (474)
T PLN02624        170 VSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFG-----DLDALEKIFEEDG-DRIAAFLFEPIQGEAGVVIPP  243 (474)
T ss_pred             EEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCC-----CHHHHHHHHHhCC-CCEEEEEECCccCCCCCcCCC
Confidence            77766777764322221100           012223221     7899999887533 57899999999999999987 


Q ss_pred             ---hHHHHHHhhhcCCCcEEEEeccccc-Cc----ceeccCcccceEEEecCCCcccCC-CcceEEEecHHHHHHhccCC
Q 015729          156 ---LSKVRKLLDEYRHPALFLVDGVSSI-CA----IDFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAK  226 (401)
Q Consensus       156 ---l~~i~~l~~~~~~~~~li~D~a~~~-~~----~~~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~~~  226 (401)
                         +++|.++|++  ||+++|+|++|.. |.    ...+.....+|++++|  |.++++ .++|+++.++++...+....
T Consensus       244 ~~~L~~l~~lc~~--~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~ls--K~lggG~~pigav~~~~~i~~~~~~~~  319 (474)
T PLN02624        244 DGYLKAVRELCSK--HNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILG--KALGGGVIPVSAVLADKDVMLCIKPGE  319 (474)
T ss_pred             HHHHHHHHHHHHH--cCCEEEEeccccCcCcCcchhhHHhcCCCCCEEEec--ccccCCCCcceeeeecHHHHhHhccCC
Confidence               8999999999  9999999999972 21    1223334457888875  888665 46799999888766554321


Q ss_pred             CCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcC--Cc-cccCCCcc
Q 015729          227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG--LK-NCTQKEEW  303 (401)
Q Consensus       227 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~-~~~~~~~~  303 (401)
                                      .+.  .++.++..++++.++++.+.++   ++.++..++.+++++.|+++.  ++ .+....  
T Consensus       320 ----------------~~~--T~~g~pl~~aaa~aaLe~l~~~---~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vr--  376 (474)
T PLN02624        320 ----------------HGS--TFGGNPLASAVAMAALQVVQDE---KLAERSAKLGQELRDQLQKIQKQFPKLIKEVR--  376 (474)
T ss_pred             ----------------cCC--CCCCCHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHHhCCCceEEEE--
Confidence                            011  2245666778888888877654   356667777888888887752  32 111111  


Q ss_pred             CCceeEEEEcCCC----CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          304 FSDTVTAVIVPSH----INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       304 ~~~~~~~~~~~~~----~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      ..+.++.+.++..    ..+.++++.|.++ ||.+.++    .++++||++...+|++|+++++++|+++++.
T Consensus       377 g~G~~~~i~l~~~~~~~~~a~~~~~~L~e~-GV~v~p~----~~~~lR~~p~l~~t~e~id~~l~~L~~~l~~  444 (474)
T PLN02624        377 GRGLLNAVVLNSPKLGPVSAYDVCLKLKER-GLLAKPT----HDTIIRLAPPLSISEDELQECSKALSDVLEH  444 (474)
T ss_pred             eeEEEEEEEecCCCcChHHHHHHHHHHHhC-CeEEecC----CCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence            1334555666322    2345788888766 9998765    2568999988889999999999999988753

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.89  E-value=1.2e-20  Score=179.75  Aligned_cols=321  Identities=16%  Similarity=0.108  Sum_probs=209.6

Q ss_pred             CCCcccccCCCcCChHHHHHHHccCcCCCC----C---ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc
Q 015729            7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYR----S---PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN   79 (401)
Q Consensus         7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~----~---~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~   79 (401)
                      ++..|.+-.|-+++++++++++.+....+.    .   ......+.++++.+++++|.+.   .++++|++.|+..++. 
T Consensus        80 tg~v~~tNlg~s~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~gae~---alvv~sg~aAi~l~l~-  155 (454)
T TIGR00474        80 TGVVLHTNLGRAPLAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGAED---ALVVNNNAAAVLLALN-  155 (454)
T ss_pred             CCcEEeccCCCCCCCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHH-
Confidence            445566666778899999999987443221    0   1123457899999999999876   5667888999988874 


Q ss_pred             cCCCCCeEEEEcCCcch----HHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCc--c--
Q 015729           80 TLSPGDRIISFLIGQFS----LLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETAT--G--  151 (401)
Q Consensus        80 ~~~~gd~vl~~~~~~~~----~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~t--G--  151 (401)
                      .+.+||+|+++...|..    ..+....+..|+++++++.+.  ..+++++++++++    +++++++++++|++  |  
T Consensus       156 ~l~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~--~~~l~dle~aI~~----~T~lv~~~h~sN~~~~G~~  229 (454)
T TIGR00474       156 TLAKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTN--RTHLKDYEDAITE----NTALLLKVHTSNYRIVGFT  229 (454)
T ss_pred             HhCCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCC--CCCHHHHHHhcCc----CCEEEEEEccCcccccCCC
Confidence            47899999999875432    123345677899999987643  3479999999974    56999999999884  6  


Q ss_pred             cccchHHHHHHhhhcCCCcEEEEeccccc---------Ccce--eccCcccceEEEecCCCcccCCCcceEEEecHHHHH
Q 015729          152 VTNNLSKVRKLLDEYRHPALFLVDGVSSI---------CAID--FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE  220 (401)
Q Consensus       152 ~~~~l~~i~~l~~~~~~~~~li~D~a~~~---------~~~~--~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~  220 (401)
                      ...|+++|.++|++  +|+++++|.+.+.         +..+  .+..+.|+|++++|+||+++|+. .|+++++++.++
T Consensus       230 ~~~dl~~I~~la~~--~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~-~G~i~g~~~~i~  306 (454)
T TIGR00474       230 EEVSIAELVALGRE--HGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQ-AGIIVGKKELIE  306 (454)
T ss_pred             CCCCHHHHHHHHHH--cCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCe-EEEEEECHHHHH
Confidence            57899999999999  9999999976321         1111  24446789999999999997664 699999999887


Q ss_pred             HhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhc-----------HHHHHHHHHHHHHHHHHHH
Q 015729          221 ASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-----------LENVIERHRRLGKATRLAV  289 (401)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g-----------~~~~~~~~~~~~~~l~~~L  289 (401)
                      ++....       +.   +.+..+.        ..++++.+++..+....           +....++.+++++.+.+.|
T Consensus       307 ~l~~~~-------l~---r~lr~~k--------~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L  368 (454)
T TIGR00474       307 RLKKNP-------LT---RALRVDK--------LTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRL  368 (454)
T ss_pred             hhhhch-------hH---HHHhhCh--------HHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHH
Confidence            665321       11   1111111        22334444444432210           2223446667778888888


Q ss_pred             HHc---CC--ccccCC--------CccCCceeEEEEc-CCCCCHHHHHHHHHhhCC--eEEccCCCCCCCcEEEEeeccc
Q 015729          290 EAW---GL--KNCTQK--------EEWFSDTVTAVIV-PSHINSSEIVRRAWQRYN--LSLGLGLNKVAGKVFRIGHLGH  353 (401)
Q Consensus       290 ~~~---g~--~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~~~--i~v~~g~~~~~~~~~Ri~~~~~  353 (401)
                      ++.   ++  ++....        +....+ -..+.+ +.+.+..++.++|++. .  |..+     ...+.+.+-+. +
T Consensus       369 ~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~-~~~v~~~~~~~~~~~l~~~lr~~-~~~ii~r-----~~~~~~~ld~r-~  440 (454)
T TIGR00474       369 KAALGPGFELEIVPGLSQVGGGSLPDERLP-SYAVTLTPDGLSAEKLEARLREL-PPPIIGR-----IEDDRFLLDLR-T  440 (454)
T ss_pred             HhhccCCceEEEEEcCCcccCCCCcCCCCC-eEEEEEecCCCCHHHHHHHHhcC-CCCEEEE-----EECCEEEEEeC-c
Confidence            763   22  222211        111112 222333 3456788999999753 3  3332     22445555443 3


Q ss_pred             CCHHHHHHHHHHH
Q 015729          354 LNELQLLGCLAGV  366 (401)
Q Consensus       354 ~~~~di~~~~~~i  366 (401)
                      +.++|++.+++++
T Consensus       441 ~~~~~~~~~~~~~  453 (454)
T TIGR00474       441 LLEDEEELLIEAL  453 (454)
T ss_pred             CCHHHHHHHHHHh
Confidence            6788888888776

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.89  E-value=1.6e-20  Score=179.41  Aligned_cols=286  Identities=14%  Similarity=0.077  Sum_probs=195.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--C------CCCCeEEEEcCCcchHHHHHHHHHcCCc----
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--L------SPGDRIISFLIGQFSLLWIDQQQRLNFN----  109 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~------~~gd~vl~~~~~~~~~~~~~~~~~~g~~----  109 (401)
                      +...++.++++++.+.+   .+++++||++|++.++...  .      .+.++|+..+.+||+.....+ ...+..    
T Consensus        81 ~~~~~la~~l~~~~~~~---~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~-~~~~~~~~~~  156 (406)
T PRK12381         81 EPVLRLAKKLIDATFAD---RVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTV-SAGGQPKYSQ  156 (406)
T ss_pred             HHHHHHHHHHHhhCCCC---eEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHH-hhcCCccccc
Confidence            44568889999887543   4999999999999988542  1      245689999998888764221 212211    


Q ss_pred             --------EEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccc-cc----chHHHHHHhhhcCCCcEEEEec
Q 015729          110 --------VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV-TN----NLSKVRKLLDEYRHPALFLVDG  176 (401)
Q Consensus       110 --------~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~-~~----~l~~i~~l~~~~~~~~~li~D~  176 (401)
                              +..++.     .|++++++.++    +++++|++.. .+++|- ..    .+++|.++|++  ||+++|+|+
T Consensus       157 ~~~~~~~~~~~~~~-----~d~~~l~~~l~----~~~aaviiEP-v~~~gg~~~~~~~~l~~l~~l~~~--~~~llI~DE  224 (406)
T PRK12381        157 DFAPLPPDIRHAAY-----NDLNSASALID----DQTCAVIVEP-IQGEGGVIPADKAFLQGLRELCDR--HNALLIFDE  224 (406)
T ss_pred             CCCCCCCCeeEeCC-----CCHHHHHHhcc----CCeeEEEEeC-CcCCCCCcCCCHHHHHHHHHHHHH--cCCEEEEcc
Confidence                    122221     27899999886    3578888874 455554 32    37889999999  999999999


Q ss_pred             ccccCcc---ee--ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCC
Q 015729          177 VSSICAI---DF--RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP  251 (401)
Q Consensus       177 a~~~~~~---~~--~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  251 (401)
                      +|.....   .+  ......+|++  +.+|.++++..+|+++.++++.+.+.....                +  ..++.
T Consensus       225 v~tG~gr~G~~~~~~~~~v~pDi~--t~sK~l~gG~~ig~~~~~~~~~~~~~~~~~----------------~--~t~~~  284 (406)
T PRK12381        225 VQTGVGRTGELYAYMHYGVTPDVL--TTAKALGGGFPIGAMLTTEKCASVMTVGTH----------------G--TTYGG  284 (406)
T ss_pred             hhhCCCCCcchhhhHhhCCCCCEE--EehhhhhCCCceEEEEEcHHHHhhcCCCCC----------------C--CCCCC
Confidence            9852211   11  1112346765  556999766678999999998877653211                1  12345


Q ss_pred             cHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcC--CccccCCCccCCceeEEEEcCCCC--CHHHHHHHHH
Q 015729          252 SIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG--LKNCTQKEEWFSDTVTAVIVPSHI--NSSEIVRRAW  327 (401)
Q Consensus       252 ~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~  327 (401)
                      ++..++++.++++.+.+.   +.++++.++.+++.+.|++++  +.+...  ....+.++++.+++..  ....+.+.|.
T Consensus       285 ~pl~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--vrg~Gl~~~~~l~~~~~~~~~~~~~~l~  359 (406)
T PRK12381        285 NPLASAVAGKVLELINTP---EMLNGVKQRHDWFVERLNTINARYGLFSE--IRGLGLLIGCVLNAEYAGKAKQISQEAA  359 (406)
T ss_pred             CHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHhhCCCEEE--EecCeEEEEEEecCchhhHHHHHHHHHH
Confidence            666778888888887543   477888899999999998863  332221  1134567777775432  3467888887


Q ss_pred             hhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          328 QRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       328 ~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ++ ||.+.+.    ..+.+|+++...+|++|+++++++|+++++++
T Consensus       360 ~~-Gv~v~~~----g~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~  400 (406)
T PRK12381        360 KA-GVMVLIA----GPNVVRFAPALNISEEEITTGLDRFARACERF  400 (406)
T ss_pred             HC-CcEEeeC----CCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence            76 9998643    23689998887899999999999999998765

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.89  E-value=1.3e-20  Score=167.42  Aligned_cols=316  Identities=15%  Similarity=0.074  Sum_probs=207.6

Q ss_pred             cCChHHHHHHHccCc-CCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcch
Q 015729           18 VHIPDQVIRAMNRNN-EDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFS   96 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~   96 (401)
                      ....|+++++|.... .....|+.++...++++.+++++|...   ++|+++||+|+.+++.+.++||..|++-...|..
T Consensus        10 ~g~~~~m~eam~~a~~~~~~~YG~D~~~~~~e~~~ae~~g~~a---~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~aHi~   86 (342)
T COG2008          10 AGPTPEMREALAAANAVGDDVYGEDPTTNALEQRIAELFGKEA---ALFVPSGTQANQLALAAHCQPGESVICHETAHIY   86 (342)
T ss_pred             CCCCHHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHHhCCce---EEEecCccHHHHHHHHHhcCCCCeEEEeccccce
Confidence            455688999999966 444557778899999999999999933   9999999999999999999999999999887776


Q ss_pred             HH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccC-CC-CceEEEEEecCCCcccccch---HHHHHHhhhcCCCc
Q 015729           97 LL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT-AH-TIKAICIVHNETATGVTNNL---SKVRKLLDEYRHPA  170 (401)
Q Consensus        97 ~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~-~~-~~~~i~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~  170 (401)
                      .. .+...-..++....+.-..++.++++++++.+..+. .+ .+..+++.+.+|..|+++|+   ++|.++||+  +|+
T Consensus        87 ~~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~--~~l  164 (342)
T COG2008          87 TDECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKE--HGL  164 (342)
T ss_pred             ecccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHH--hCC
Confidence            55 222333334445545445678899999999887521 11 23344444444577999985   457888999  999


Q ss_pred             EEEEecccccCc---ceeccC--cccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCC
Q 015729          171 LFLVDGVSSICA---IDFRMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGT  245 (401)
Q Consensus       171 ~li~D~a~~~~~---~~~~~~--~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  245 (401)
                      .|+.|++--+-+   ...+..  .-++|+++++++|.++.+. -++|+++.++.+++.-.+.            .  .|.
T Consensus       165 ~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~-gAiv~gn~~~~~~a~~~rK------------~--~Gg  229 (342)
T COG2008         165 PLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPV-GAIVFGNRDFAKRARRWRK------------R--AGG  229 (342)
T ss_pred             ceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCccee-eeEEEcCHHHHHHHHHHHH------------H--hcc
Confidence            999998743211   111222  2379999999999885444 4899999998776653211            0  010


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHH--HHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHHH
Q 015729          246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRL--GKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEI  322 (401)
Q Consensus       246 ~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~--~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  322 (401)
                          -.+-..  -+.++...+.+.++ ......+++  ++.|.+.|++. |+++..+.   ..+ .+.+.+|+.    .+
T Consensus       230 ----l~~k~r--~laA~~~~~l~~~~-~~~~~~Han~mA~~La~~~~~~~G~~~~~~~---~tN-~vf~~l~~~----~i  294 (342)
T COG2008         230 ----LMRKAR--FLAAQGLYALEDDV-WRLAADHANAMAARLAEGLEAKPGVKLAFPV---ETN-MVFVRLPES----AI  294 (342)
T ss_pred             ----cHhhhh--HHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHhhhhcCCceeccCC---ccc-EEEEECChH----HH
Confidence                011111  12223333333342 233344455  99999999975 99987652   344 454667532    11


Q ss_pred             HHHHHhhCCeEEccCCCCCCC-cEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          323 VRRAWQRYNLSLGLGLNKVAG-KVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       323 ~~~L~~~~~i~v~~g~~~~~~-~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                       +.|... ++....+...... ..+|+.++..++++|+|+++..+++.+
T Consensus       295 -~~l~~~-~~~~~~~~~~~~~~~~vRfvts~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         295 -EALRLA-GALFYRGVLIGAHGEIVRFVTSWATSEEDVDELVAAIKALL  341 (342)
T ss_pred             -HHHHhh-chhheeeeeccCCCceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence             333322 3333332221122 369999999999999999999998764

>PLN02509 cystathionine beta-lyase

Probab=99.89  E-value=5.7e-21  Score=182.57  Aligned_cols=285  Identities=13%  Similarity=0.118  Sum_probs=190.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCC
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE  119 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  119 (401)
                      ....++++.++++.|.+.   .+++++|++|+..++ .++++||+|+++.+.|.++.  +.......|++++.++.    
T Consensus       133 pt~~aLE~~lA~leg~e~---ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~----  204 (464)
T PLN02509        133 PTRDALESLLAKLDKADR---AFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT----  204 (464)
T ss_pred             HHHHHHHHHHHHHhCCCE---EEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCC----
Confidence            467899999999987654   567778888886554 57899999999999877654  33455678998888863    


Q ss_pred             CCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecC
Q 015729          120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS  199 (401)
Q Consensus       120 ~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~  199 (401)
                       .|++++++++++    ++++|++++|+||+|.+.|+++|.++|++  +|+++|+|++++.+.... ....++|++++|.
T Consensus       205 -~d~e~l~~ai~~----~TklV~lesPsNPtG~i~Dl~~I~~lAk~--~g~~lIVD~A~a~~~~~~-pl~~gaDivv~S~  276 (464)
T PLN02509        205 -TNLDEVAAAIGP----QTKLVWLESPTNPRQQISDIRKIAEMAHA--QGALVLVDNSIMSPVLSR-PLELGADIVMHSA  276 (464)
T ss_pred             -CCHHHHHHhCCc----CCeEEEEECCCCCCCCHHHHHHHHHHHHH--cCCEEEEECCccccccCC-hhhcCCcEEEecC
Confidence             278999998863    56999999999999999999999999999  999999999988765422 2346799999999


Q ss_pred             CCcccCCCc--ceEEEecHHH-HHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHH
Q 015729          200 QKALSLPTG--MGIVCASPKA-LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE  276 (401)
Q Consensus       200 ~K~l~g~~g--~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~  276 (401)
                      +|+++|+.+  .|+++++++. ..++...             ... .|.    ..++..++....+++.     +..+++
T Consensus       277 tK~l~G~gdv~gG~v~~~~~~l~~~~~~~-------------~~~-~g~----~l~p~~A~l~lr~L~t-----L~~R~~  333 (464)
T PLN02509        277 TKFIAGHSDVMAGVLAVKGEKLAKEVYFL-------------QNS-EGS----GLAPFDCWLCLRGIKT-----MALRIE  333 (464)
T ss_pred             cccccCCCccceeEEEeccHHHHHHHHHH-------------HHh-cCC----CcCHHHHHHHHhhhhh-----HHHHHH
Confidence            999987655  5888876553 2222210             000 121    2344333333333332     466888


Q ss_pred             HHHHHHHHHHHHHHHc-CCc-cccC----CCc--------cCCceeEEEEcCCCC-CHHHHHHHHHhhCCeEEccCCC--
Q 015729          277 RHRRLGKATRLAVEAW-GLK-NCTQ----KEE--------WFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLGLGLN--  339 (401)
Q Consensus       277 ~~~~~~~~l~~~L~~~-g~~-~~~~----~~~--------~~~~~~~~~~~~~~~-~~~~l~~~L~~~~~i~v~~g~~--  339 (401)
                      +.+++++.+.+.|++. .++ +..+    .+.        ...+.++.|.+ .+. .+..+.+.|. -+.+.+..|..  
T Consensus       334 r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~-~~~~~~~~f~~~l~-l~~~a~slG~~~S  411 (464)
T PLN02509        334 KQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFIT-GSVALSKHLVETTK-YFSIAVSFGSVKS  411 (464)
T ss_pred             HHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEe-CCHHHHHHHHHcCC-cceEcccCCCCCc
Confidence            8999999999999875 332 2111    110        12356888887 331 1223333331 12233332211  


Q ss_pred             ---------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          340 ---------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       340 ---------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                                           ....+.+|+|+..    ||+|.+++-|+.+|+
T Consensus       412 Li~~p~~~sh~~~~~~~~~~~Gi~~~liRlSvGl----E~~~DLi~Dl~~Al~  460 (464)
T PLN02509        412 LISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFR  460 (464)
T ss_pred             eeeCCcccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHc
Confidence                                 0123579998654    678888888887774

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.89  E-value=7.3e-21  Score=178.83  Aligned_cols=280  Identities=15%  Similarity=0.115  Sum_probs=184.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH-H-HHHHHHcCCcEEEEeCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL-W-IDQQQRLNFNVDVVESDW  117 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~-~~~~~~~g~~~~~v~~~~  117 (401)
                      ......+++++++++. .  .+ .+++++|++|+..++.+++++||+|++++++|++.. + .......|++++.++.+.
T Consensus        49 ~~p~~~~Le~~lA~l~-~--~~-~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~  124 (366)
T PRK07582         49 SNPTWRALEAALGELE-G--AE-ALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAG  124 (366)
T ss_pred             CCccHHHHHHHHHHHc-C--CC-EEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCC
Confidence            3456789999999998 2  22 677788899999999889999999999999887765 2 223456799999998653


Q ss_pred             CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEeccccc--CcceeccCcccceEE
Q 015729          118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI--CAIDFRMDEWGIDVA  195 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~--~~~~~~~~~~~~di~  195 (401)
                      ..       + .+.    ++++++++++|+||+|.+.|+++|.++|++  +|+++++|++++.  +..++   +.++|++
T Consensus       125 ~~-------~-~~~----~~t~lV~le~p~NPtg~v~di~~I~~~a~~--~g~~lvVD~t~~~~~~~~p~---~~g~Div  187 (366)
T PRK07582        125 MA-------E-AAL----AGADLVLAETPSNPGLDVCDLAALAAAAHA--AGALLVVDNTTATPLGQRPL---ELGADLV  187 (366)
T ss_pred             hH-------H-Hhc----cCceEEEEECCCCCCCCccCHHHHHHHHHH--cCCEEEEECCCCCccccCch---hcCCcEE
Confidence            21       1 222    356899999999999999999999999999  9999999999753  33333   3578999


Q ss_pred             EecCCCcccCCCc--ceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHH
Q 015729          196 LTGSQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLE  272 (401)
Q Consensus       196 ~~s~~K~l~g~~g--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~  272 (401)
                      ++|.+|+++|+.|  .|+++.+ +++.+++...             ... .|    .+++......+...++     -++
T Consensus       188 v~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~-------------~~~-~g----~~~~~~~a~l~~r~l~-----tl~  244 (366)
T PRK07582        188 VASDTKALTGHSDLLLGYVAGRDPELMAAVERW-------------RLL-AG----AIPGPFEAWLAHRSLG-----TLG  244 (366)
T ss_pred             EecccccccCCCCeeEEEEEcCcHHHHHHHHHH-------------HHH-hC----CCCCHHHHHHHHhccc-----cHH
Confidence            9999999988776  4888875 5655544321             111 11    1344433222222222     245


Q ss_pred             HHHHHHHHHHHHHHHHHHHc-CCcc-cc---CCCc---------cCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEc---
Q 015729          273 NVIERHRRLGKATRLAVEAW-GLKN-CT---QKEE---------WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLG---  335 (401)
Q Consensus       273 ~~~~~~~~~~~~l~~~L~~~-g~~~-~~---~~~~---------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~---  335 (401)
                      .+.++..+++..+.+.|++. .+.. ..   +..+         ...+.++.|+++   +.+++.+.+. +.++...   
T Consensus       245 ~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~---~~~~~~~~~~-~l~~~~~~~s  320 (366)
T PRK07582        245 LRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA---DAAAAERFVA-ASRLVVAATS  320 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC---CHHHHHHHHH-hCCcceeccc
Confidence            67788889999999999985 4322 11   1111         013568889984   3455555554 3354432   


Q ss_pred             cCCC------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          336 LGLN------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       336 ~g~~------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      .|..            ...++.+|+|+..    |+.+.+++.|+++|+
T Consensus       321 ~G~~~sl~~~~~~~~~~~~~~liR~svGl----E~~~dli~dl~~al~  364 (366)
T PRK07582        321 FGGVHTSADRRARWGDAVPEGFVRLSCGI----EDTDDLVADLERALD  364 (366)
T ss_pred             CCCccchhhhHHHcCCCCCCCeEEEEecc----CCHHHHHHHHHHHHh
Confidence            2210            0234579998766    344445555555443

>PRK07049 methionine gamma-lyase; Validated

Probab=99.89  E-value=6.1e-21  Score=182.30  Aligned_cols=294  Identities=13%  Similarity=0.064  Sum_probs=193.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHH--HHHHHHcCCcEEEEeCCCCC
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLW--IDQQQRLNFNVDVVESDWGE  119 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--~~~~~~~g~~~~~v~~~~~~  119 (401)
                      ....++++.|+++.|.+.   +++++||++|+..++.+++++||+|+++.+.|.++..  ...+...|++++.++..   
T Consensus        83 Pt~~~Le~~lA~leg~~~---~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~---  156 (427)
T PRK07049         83 PNSEIVEDRLAVYEGAES---AALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADG---  156 (427)
T ss_pred             cCHHHHHHHHHHHhCCCc---EEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeCC---
Confidence            446799999999998653   7888999999999999999999999999998777652  23456679887766522   


Q ss_pred             CCChHHHHHHHhccC-CCCceEEEEEecCCCcccccchHHHHHHhhhcC----CCcEEEEecccccCcceeccCcccceE
Q 015729          120 GAKLDVLASKLAADT-AHTIKAICIVHNETATGVTNNLSKVRKLLDEYR----HPALFLVDGVSSICAIDFRMDEWGIDV  194 (401)
Q Consensus       120 ~~d~~~le~~~~~~~-~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~----~~~~li~D~a~~~~~~~~~~~~~~~di  194 (401)
                       .|++++++.+++.. .++++++++++|+||||.++|+++|.++++..+    +++++++|+++..... ......++|+
T Consensus       157 -~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~-~~pl~~g~di  234 (427)
T PRK07049        157 -LSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVF-QKPLEHGADL  234 (427)
T ss_pred             -CCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcccccc-CCccccCCCE
Confidence             46788887775311 136799999999999999999999999888732    6899999999654322 1222457899


Q ss_pred             EEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHH
Q 015729          195 ALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLE  272 (401)
Q Consensus       195 ~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~  272 (401)
                      ++.|.+|+++|.+|  +|+++.++++.+.+...+            .      .+..+.+...+..+...++     .+.
T Consensus       235 vv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~------------~------~~g~~ls~~~a~l~~r~L~-----tl~  291 (427)
T PRK07049        235 SVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALR------------S------AIGTQLDPHSCWMLGRSLE-----TLV  291 (427)
T ss_pred             EEEcCceeecCCCCcEEEEEECCHHHHHHHHHHH------------H------hcCCCCCHHHHHHHHcCCC-----hHH
Confidence            99999999986554  599998888766664321            0      1122355543333333332     245


Q ss_pred             HHHHHHHHHHHHHHHHHHHc-CCcc-ccC-----CCc---------cCCceeEEEEcCCCC-CHHHHHHHHHhhCCeEEc
Q 015729          273 NVIERHRRLGKATRLAVEAW-GLKN-CTQ-----KEE---------WFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLG  335 (401)
Q Consensus       273 ~~~~~~~~~~~~l~~~L~~~-g~~~-~~~-----~~~---------~~~~~~~~~~~~~~~-~~~~l~~~L~~~~~i~v~  335 (401)
                      ..+++..++++.+.+.|++. ++.- .-+     ..+         ...+.++.|.+..+. .+..+.+.|. -+++.+.
T Consensus       292 ~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~-l~~~~~s  370 (427)
T PRK07049        292 LRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQAAAFRFLNALQ-IFKLAVS  370 (427)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcCCHHHHHHHHHcCc-ccEEccc
Confidence            56777789999999999875 4322 111     000         123568889884221 1223333332 2222222


Q ss_pred             cCCC-----------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          336 LGLN-----------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       336 ~g~~-----------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      .|..                       ...++.+|||+..    ||.|.+++-|+.+|+
T Consensus       371 lG~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~  425 (427)
T PRK07049        371 LGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIGI----EHPDDLIADLAQALD  425 (427)
T ss_pred             CCCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeCc----CCHHHHHHHHHHHHh
Confidence            2211                       0123569998654    777888888877775

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.89  E-value=4.9e-21  Score=180.46  Aligned_cols=213  Identities=17%  Similarity=0.105  Sum_probs=154.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      .....++++.++++.|.+.   .+++++|+.|+..++ +++++||+|+++.+.|.+.+  +...+...|++++.++..  
T Consensus        49 ~p~~~~Le~~lA~l~g~~~---~~~~~sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~--  122 (377)
T PRK07671         49 NPTRAALEELIAVLEGGHA---GFAFGSGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTS--  122 (377)
T ss_pred             ChHHHHHHHHHHHHhCCCc---eEEeCCHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCC--
Confidence            4567899999999999865   456777888887665 57899999999999876554  334556789999988743  


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                         |++++++++++    ++++|++++|+||+|.+.|+++|.++|++  +|+++++|++++.+... .....++|++++|
T Consensus       123 ---d~~~l~~ai~~----~tklV~le~P~NPtg~~~dl~~I~~la~~--~g~~lvvD~a~~~~~~~-~p~~~g~Divv~S  192 (377)
T PRK07671        123 ---NLEEVEEAIRP----NTKAIYVETPTNPLLKITDIKKISTIAKE--KGLLTIVDNTFMTPYWQ-SPISLGADIVLHS  192 (377)
T ss_pred             ---CHHHHHHhcCC----CCeEEEEECCCCCCCcccCHHHHHHHHHH--cCCEEEEECCCCccccC-ChhhhCCeEEEec
Confidence               89999999974    56999999999999999999999999999  99999999998754322 2234678999999


Q ss_pred             CCCcccCCCc--ceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHH
Q 015729          199 SQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI  275 (401)
Q Consensus       199 ~~K~l~g~~g--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  275 (401)
                      .+|+++|+.+  .|+++++ +++.+++...             .... |    ...+...   +..++..+.  -+..++
T Consensus       193 ~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~-------------~~~~-g----~~~~~~~---a~l~~~~l~--tl~~R~  249 (377)
T PRK07671        193 ATKYLGGHSDVVAGLVVVNSPELAEDLHFV-------------QNST-G----GILGPQD---SWLLLRGLK--TLGIRM  249 (377)
T ss_pred             CcccccCCccceeEEEEeCcHHHHHHHHHH-------------HHhh-c----CCCCHHH---HHHHHcCcC--hHHHHH
Confidence            9999976653  3667665 4555544321             1110 1    1233321   222222211  145678


Q ss_pred             HHHHHHHHHHHHHHHHc
Q 015729          276 ERHRRLGKATRLAVEAW  292 (401)
Q Consensus       276 ~~~~~~~~~l~~~L~~~  292 (401)
                      ++.+++++.+.+.|++.
T Consensus       250 ~~~~~na~~la~~L~~~  266 (377)
T PRK07671        250 EEHETNSRAIAEFLNNH  266 (377)
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            88889999999999874

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.89  E-value=1.8e-20  Score=180.47  Aligned_cols=302  Identities=19%  Similarity=0.140  Sum_probs=200.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcchHHHHHHHHHc-C----------
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQFSLLWIDQQQRL-N----------  107 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~~-g----------  107 (401)
                      .+...++.++|+++++... +.+.|+++|++|++.++..  .+....+|+....+||+.....+.-.. .          
T Consensus        85 ~~~~~~la~~L~~~~~~~~-~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~  163 (433)
T PRK08117         85 YESILKLAEELAEITPGGL-DCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPL  163 (433)
T ss_pred             CHHHHHHHHHHHHhCCCCC-CEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCC
Confidence            3556788899998874222 3589999999999998853  233446788888888886533221110 0          


Q ss_pred             -CcEEEEeCCCCCC------------CChHHHHHHHhc-cCCCCceEEEEEecCCCcccccc----hHHHHHHhhhcCCC
Q 015729          108 -FNVDVVESDWGEG------------AKLDVLASKLAA-DTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHP  169 (401)
Q Consensus       108 -~~~~~v~~~~~~~------------~d~~~le~~~~~-~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~  169 (401)
                       ..+..++.+....            -+++.+++.+++ ...+++.+|++.......|.+.+    ++++.++|++  ||
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~--~g  241 (433)
T PRK08117        164 LGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDR--HG  241 (433)
T ss_pred             CCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHH--cC
Confidence             0123333322111            145667777653 11246889999999998999987    8999999999  99


Q ss_pred             cEEEEecccccCcc---eeccCccc--ceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcC
Q 015729          170 ALFLVDGVSSICAI---DFRMDEWG--IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG  244 (401)
Q Consensus       170 ~~li~D~a~~~~~~---~~~~~~~~--~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  244 (401)
                      +++|+|++|+....   .+..+..+  +|++  +.+|.++++.++|+++.++++.+.+.....                +
T Consensus       242 ~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~--t~sK~lg~G~pigav~~~~~i~~~~~~~~~----------------~  303 (433)
T PRK08117        242 ILLIFDEVQTGFGRTGEWFAAQTFGVVPDIM--TIAKGIASGLPLSAVVASKELMEQWPLGSH----------------G  303 (433)
T ss_pred             CEEEEecchhccCccccchhHhhcCCCCCEe--ehhhhccCCCcceeEEEcHHHHhhccCCCC----------------C
Confidence            99999999883211   11112223  5654  556999776668999999998776642210                1


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcCCC------
Q 015729          245 TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSH------  316 (401)
Q Consensus       245 ~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~------  316 (401)
                      .  .++.++..+++..++++.+.+.   +..++..++.+++++.|+++  .+.+...  ....+.++.+.+.+.      
T Consensus       304 ~--T~~~np~~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~~~--vrg~Gl~~gi~~~~~~~~~~~  376 (433)
T PRK08117        304 T--TFGGNPVACAAALATLEVIKEE---KLLDNANEMGAYALERLEVLKEKHPVIGD--VRGIGLMIGIEIVDPDGEPDG  376 (433)
T ss_pred             C--CCCcCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCceee--eecCCcEEEEEEecCCCCcch
Confidence            1  2345677788888899887654   36677778888888888875  2332221  123445666666221      


Q ss_pred             CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          317 INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       317 ~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .....+.+.|.++ ||.+.+...  .++.+|+++...+|++|+++++++|.++++++
T Consensus       377 ~~~~~~~~~l~~~-Gv~~~~~g~--~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~  430 (433)
T PRK08117        377 DAVEKILDKCLEK-GLLFYLCGN--AGNVLRMIPPLTVTKEEIDEGLDILDEALTEY  430 (433)
T ss_pred             HHHHHHHHHHHHC-CCEEeecCC--CCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence            1234577777766 988765321  25689999888899999999999999998764

>PLN00144 acetylornithine transaminase

Probab=99.89  E-value=3.3e-20  Score=175.39  Aligned_cols=287  Identities=16%  Similarity=0.114  Sum_probs=195.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--C-C------C------CCeEEEEcCCcchHHHHHHHHHc
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--L-S------P------GDRIISFLIGQFSLLWIDQQQRL  106 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~-~------~------gd~vl~~~~~~~~~~~~~~~~~~  106 (401)
                      +...++.++|.+..+.   +.+.++++|++|++.++...  . .      +      ..+|+....+||+.....+.. .
T Consensus        57 ~~~~~la~~l~~~~~~---~~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~-~  132 (382)
T PLN00144         57 IPQVELAKRLVASSFA---DRVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALAL-T  132 (382)
T ss_pred             HHHHHHHHHHHhcCCC---CeEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhc-C
Confidence            4455777777776532   35999999999999988431  1 1      1      257899999999876433321 1


Q ss_pred             CC------------cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHhhhcCCCc
Q 015729          107 NF------------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPA  170 (401)
Q Consensus       107 g~------------~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~  170 (401)
                      +-            .+..++.+     |++++++.+..   ++++++++...+|+.|...+    +++|.++|++  +|+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~---~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~--~g~  202 (382)
T PLN00144        133 SKEQYRTPFEPLMPGVTFVEYG-----NLEAARKLIQK---GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDE--AGA  202 (382)
T ss_pred             CCccccccCCCCCCCeEEeCCC-----CHHHHHHhcCC---CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHH--cCC
Confidence            11            11222221     78999988853   46889999988999665542    7889999999  999


Q ss_pred             EEEEecccccCcc---ee--ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCC
Q 015729          171 LFLVDGVSSICAI---DF--RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGT  245 (401)
Q Consensus       171 ~li~D~a~~~~~~---~~--~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  245 (401)
                      ++|+|+++.....   .+  +.....+|++++  +|.++++.++|++++++++.+.+.....                + 
T Consensus       203 llI~DEv~tg~gr~g~~~~~~~~~~~PDi~t~--sK~l~~G~pig~v~~~~~~~~~~~~~~~----------------~-  263 (382)
T PLN00144        203 LLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTL--AKPLAGGLPIGAVLVTEKVASAINPGDH----------------G-  263 (382)
T ss_pred             EEEEechhhCCCccchHhhhhhcCCCCCEEEe--cccccCCcceEEEEEcHHHHhccCCCCC----------------C-
Confidence            9999999874321   11  223345775555  5999877778999999998877653211                1 


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcCCCCCHHHHH
Q 015729          246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSHINSSEIV  323 (401)
Q Consensus       246 ~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  323 (401)
                       ..++.++..++++.++++++.+.+   ..++..+..+++++.|+++  ..+....  -...+.++++++ + .+...+.
T Consensus       264 -~T~~~~pl~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~l~~~~~~~~~~~~--vrg~G~~~~l~l-~-~~~~~~~  335 (382)
T PLN00144        264 -STFAGGPLVCNAALAVLDKISKPG---FLASVAKKGEYLRELLRRKLGGNPHVKE--VRGVGLLVGIQL-D-VPAGPLV  335 (382)
T ss_pred             -CCCCCCHHHHHHHHHHHHHHhhch---HHHHHHHHHHHHHHHHHHHHhhCCCcee--eecCceEEEEEe-c-CccHHHH
Confidence             133466667788888889887643   4555666666666666653  3322211  112567888888 3 2457888


Q ss_pred             HHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          324 RRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       324 ~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ..+.++ ||.+.++..   ++.+|+++....+++|+++++++|++++.++
T Consensus       336 ~~~~~~-Gv~i~~~~~---~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~~  381 (382)
T PLN00144        336 DACRDS-GLLVLTAGK---GDVVRLVPPLVISEAELEQAVEILADCLPAL  381 (382)
T ss_pred             HHHHHC-CeEEeecCC---CCEEEEeCCCccCHHHHHHHHHHHHHHHHhc
Confidence            888876 999887621   4789998877789999999999999998753

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.89  E-value=1.1e-20  Score=180.15  Aligned_cols=164  Identities=18%  Similarity=0.177  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDW  117 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~  117 (401)
                      ..+...++++.+++++|.+.   .+++++|+.|+.+++.+++++||+|+++...|.+..  +...+...|+++++++ +.
T Consensus        67 ~~pt~~~le~~la~l~g~~~---~v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~~  142 (437)
T PRK05613         67 TNPTVEALENRIASLEGGVH---AVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE-NP  142 (437)
T ss_pred             cChHHHHHHHHHHHHhCCCe---EEEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC-CC
Confidence            34668899999999999853   566677789999888888999999999988777764  3455677899999998 32


Q ss_pred             CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEe
Q 015729          118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT  197 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~  197 (401)
                      .   |++++++++++    ++++|++.++.||+|.+.|+++|.++|++  +|+++|+|++++.+.. .+..+.|+|++++
T Consensus       143 ~---d~e~l~~~l~~----~tk~V~~e~~~Np~~~v~di~~I~~la~~--~gi~livD~t~a~g~~-~~p~~~GaDivv~  212 (437)
T PRK05613        143 D---DPESWQAAVQP----NTKAFFGETFANPQADVLDIPAVAEVAHR--NQVPLIVDNTIATAAL-VRPLELGADVVVA  212 (437)
T ss_pred             C---CHHHHHHhCCc----cCeEEEEECCCCCCCcccCHHHHHHHHHH--cCCeEEEECCCccccc-cChHHhCCCEEEe
Confidence            2   79999999874    56899999999999999999999999999  9999999999987654 3445678999999


Q ss_pred             cCCCcccCC-Ccc-eEEEecHH
Q 015729          198 GSQKALSLP-TGM-GIVCASPK  217 (401)
Q Consensus       198 s~~K~l~g~-~g~-G~l~~~~~  217 (401)
                      |.||+++|. -++ |+++.+++
T Consensus       213 S~~K~l~G~gd~~gG~vv~~~~  234 (437)
T PRK05613        213 SLTKFYTGNGSGLGGVLIDGGK  234 (437)
T ss_pred             eccceecCCCcceeEEEEecCc
Confidence            999999653 234 45554443

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.89  E-value=1.4e-20  Score=178.39  Aligned_cols=308  Identities=13%  Similarity=0.049  Sum_probs=197.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      .+...++++.++++.|.+.   .+.++||+.|+.+++.+++++||+|+++.+.|.+..  +.......|+++++++..  
T Consensus        60 nPtv~~lE~~la~leg~~~---av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~--  134 (432)
T PRK06702         60 NPTLAAFEQKLAELEGGVG---AVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPN--  134 (432)
T ss_pred             CcHHHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCC--
Confidence            3568899999999999876   678999999999999989999999999998877654  233457789999999653  


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                        +|++++++++++    ++|+|++.++.||++.+.|+++|.++|++  +|+++++|++.+.+. ....-+.|+||++.|
T Consensus       135 --~d~~~l~~~I~~----~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~--~gi~livD~T~~tP~-~~~pl~~GADIvv~S  205 (432)
T PRK06702        135 --LTADEIVALAND----KTKLVYAESLGNPAMNVLNFKEFSDAAKE--LEVPFIVDNTLATPY-LCQAFEHGANIIVHS  205 (432)
T ss_pred             --CCHHHHHHhCCc----CCeEEEEEcCCCccccccCHHHHHHHHHH--cCCEEEEECCCCchh-hCChhhcCCCEEEEc
Confidence              589999999985    56999999999999999999999999999  999999999975331 123446789999999


Q ss_pred             CCCcccCCCcc--eEEEecHHHH-H-----HhccCCC---C-ccccch--HHHH--HHhhcCCCCCCCCcHHHHHHHHHH
Q 015729          199 SQKALSLPTGM--GIVCASPKAL-E-----ASKTAKS---V-RVFFDW--KDYI--KFYNLGTFWPYTPSIQLLYGLRAA  262 (401)
Q Consensus       199 ~~K~l~g~~g~--G~l~~~~~~~-~-----~~~~~~~---~-~~~~~~--~~~~--~~~~~g~~~~~~~~~~~~~a~~~a  262 (401)
                      .+|+++|..+.  |+++.+..+. .     .+.....   . .+..+.  ..+.  ........+..+.++....   .+
T Consensus       206 ~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~---l~  282 (432)
T PRK06702        206 TTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAY---IS  282 (432)
T ss_pred             cccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHH---HH
Confidence            99999876542  5555333210 0     0000000   0 000000  0000  0000000112245553222   22


Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccc-cCC-Cc------------cCCceeEEEEcCCCC-CHHHHHHHH
Q 015729          263 LDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNC-TQK-EE------------WFSDTVTAVIVPSHI-NSSEIVRRA  326 (401)
Q Consensus       263 l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~-~~------------~~~~~~~~~~~~~~~-~~~~l~~~L  326 (401)
                      +..++  .++.+.++..+++..+.+.|++. .+... .+. ++            ...+.++.|.++.+. .+.++.+.|
T Consensus       283 ~rgL~--Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l  360 (432)
T PRK06702        283 NIGLE--TLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIKGGLEAAKEFIANV  360 (432)
T ss_pred             HhccC--cHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhC
Confidence            22222  25678888899999999999985 43321 110 00            124568889984221 122333333


Q ss_pred             HhhCCeEEccCCC-----------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          327 WQRYNLSLGLGLN-----------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       327 ~~~~~i~v~~g~~-----------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      . -+.+.+..|..                       ....+.+|+|+..    ||.|.+++-|+.+|+.
T Consensus       361 ~-l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl----Ed~eDLi~Dl~~Al~~  424 (432)
T PRK06702        361 K-LATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLSVGI----EDVSDIIADLEAALVG  424 (432)
T ss_pred             c-cceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHhc
Confidence            2 22233222210                       0013579998644    7888888888888753

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.89  E-value=9.4e-21  Score=180.55  Aligned_cols=304  Identities=16%  Similarity=0.057  Sum_probs=191.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      .....++++.++++.|.+.   .+++++|+.|+..++.+++++||+|+++...|.+..  +...+...|++++.++ +. 
T Consensus        68 ~p~~~~Le~~lA~l~g~~~---av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d~-  142 (436)
T PRK07812         68 NPTQDVVEQRIAALEGGVA---ALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-DP-  142 (436)
T ss_pred             CchHHHHHHHHHHHhCCCe---EEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-CC-
Confidence            3556799999999999876   678889999999999999999999999988766554  2234456788888885 22 


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                        .|++++++++++    ++++|++.+++||+|.+.|+++|.++|++  +|+++|+|++++.+... ...++|+|+++.|
T Consensus       143 --~d~e~l~~ai~~----~tklV~ie~~sNp~G~v~Dl~~I~~la~~--~gi~liVD~t~a~~~~~-~pl~~GaDivv~S  213 (436)
T PRK07812        143 --DDLDAWRAAVRP----NTKAFFAETISNPQIDVLDIPGVAEVAHE--AGVPLIVDNTIATPYLI-RPLEHGADIVVHS  213 (436)
T ss_pred             --CCHHHHHHhCCC----CCeEEEEECCCCCCCeecCHHHHHHHHHH--cCCEEEEECCCcccccC-CchhcCCCEEEEe
Confidence              289999998874    56999999999999999999999999999  99999999998866443 3335789999999


Q ss_pred             CCCcccCCCc-ceEEEe-cHHH-HH--HhccCCC-Cccccc-------h-----HHHH-HHhhcCCCCCCCCcHHHHHHH
Q 015729          199 SQKALSLPTG-MGIVCA-SPKA-LE--ASKTAKS-VRVFFD-------W-----KDYI-KFYNLGTFWPYTPSIQLLYGL  259 (401)
Q Consensus       199 ~~K~l~g~~g-~G~l~~-~~~~-~~--~~~~~~~-~~~~~~-------~-----~~~~-~~~~~g~~~~~~~~~~~~~a~  259 (401)
                      .||+++|..+ +|.+++ +... +.  ....... ...+..       .     +... .....|    ...++..   +
T Consensus       214 ~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G----~~l~p~~---a  286 (436)
T PRK07812        214 ATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLG----SAISPFN---A  286 (436)
T ss_pred             cccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcC----CCCCHHH---H
Confidence            9999965432 444444 3321 00  0000000 000000       0     0000 000112    2344421   2


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCcc-ccC-------------CCccCCceeEEEEcCCCC-CHHHHH
Q 015729          260 RAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKN-CTQ-------------KEEWFSDTVTAVIVPSHI-NSSEIV  323 (401)
Q Consensus       260 ~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~-------------~~~~~~~~~~~~~~~~~~-~~~~l~  323 (401)
                      ...++-+  .-+..+.++..+++..+.+.|++. +++. ..+             +.....+.++.|++..+. .+..+.
T Consensus       287 ~l~~rgl--~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~  364 (436)
T PRK07812        287 FLIAQGL--ETLSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAGGVEAGKAFV  364 (436)
T ss_pred             HHHhcCc--CcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHH
Confidence            2222211  126778999999999999999985 4321 111             000124668889984321 122333


Q ss_pred             HHHHhhCCeEEccCCC-----------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          324 RRAWQRYNLSLGLGLN-----------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       324 ~~L~~~~~i~v~~g~~-----------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      +.|. -+++.+..|..                       ....+.+|||+..    ||.|.+++-|+.+|+.
T Consensus       365 ~~l~-l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~~liRlSvGl----Ed~~dli~dl~~Al~~  431 (436)
T PRK07812        365 NALT-LHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLAVGI----EGIDDILADLEAGFAA  431 (436)
T ss_pred             HhCC-cceEecccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHh
Confidence            3332 22222222211                       0123569998654    6777777777777764

>PRK05939 hypothetical protein; Provisional

Probab=99.89  E-value=1.2e-20  Score=178.53  Aligned_cols=159  Identities=16%  Similarity=0.182  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH-HHHHHHHcCCcEEEEeCCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGE  119 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~  119 (401)
                      .....++++.++++.|.+.   .+.+++|+.|+..++.+++++||+|+++++.|.++. +.......|++++.++..   
T Consensus        46 ~p~~~~lE~~la~leg~~~---~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~---  119 (397)
T PRK05939         46 TPTTAALEAKITKMEGGVG---TVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT---  119 (397)
T ss_pred             CHHHHHHHHHHHHHhCCCe---EEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEEEECCC---
Confidence            4667899999999999876   456667799999999889999999999998776654 224456789999998753   


Q ss_pred             CCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecC
Q 015729          120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS  199 (401)
Q Consensus       120 ~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~  199 (401)
                        |++++++++++    ++++|++++++||+|.+.|+++|.++|++  +|+++|+|++++.+. .++....|+|+++.|.
T Consensus       120 --d~e~l~~~l~~----~tklV~vesp~NptG~v~dl~~I~~la~~--~gi~livD~t~a~~~-~~~~~~~gaDivv~S~  190 (397)
T PRK05939        120 --DVQNVAAAIRP----NTRMVFVETIANPGTQVADLAGIGALCRE--RGLLYVVDNTMTSPW-LFRPKDVGASLVINSL  190 (397)
T ss_pred             --CHHHHHHhCCC----CCeEEEEECCCCCCCCHHhHHHHHHHHHH--cCCEEEEECCccccc-ccCccccCCEEEEecC
Confidence              79999999874    67999999999999999999999999999  999999999987653 3455567899999999


Q ss_pred             CCcccCCC-cceEEEe
Q 015729          200 QKALSLPT-GMGIVCA  214 (401)
Q Consensus       200 ~K~l~g~~-g~G~l~~  214 (401)
                      +|+++|.. .+|.+++
T Consensus       191 sK~~~g~g~~igg~v~  206 (397)
T PRK05939        191 SKYIAGHGNALGGAVT  206 (397)
T ss_pred             eecccCCCCeEEEEEe
Confidence            99997643 2355444

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.89  E-value=2.1e-20  Score=178.75  Aligned_cols=162  Identities=18%  Similarity=0.190  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDW  117 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~  117 (401)
                      ......++++++++++|.+.   .++++||++|+..++.+++++||+|+++.+.|.+..  +...+...|++++.++.+ 
T Consensus        55 ~~p~~~~le~~lA~l~g~~~---~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~-  130 (418)
T TIGR01326        55 MNPTTDVLEQRIAALEGGVA---ALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPD-  130 (418)
T ss_pred             CChhHHHHHHHHHHHhCCCe---EEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCC-
Confidence            34557799999999999754   788999999999999888999999999998776654  445667789999988753 


Q ss_pred             CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEe
Q 015729          118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT  197 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~  197 (401)
                          |++++++++++    ++++|++++++||+|.+.|+++|.++|++  +|+++|+|++++.+.. ......++|+++.
T Consensus       131 ----d~~~l~~~l~~----~t~~V~le~p~NPtg~v~dl~~I~~la~~--~~i~livD~t~~~~~~-~~~l~~g~Divv~  199 (418)
T TIGR01326       131 ----DPEEFEKAIDE----NTKAVFAETIGNPAINVPDIEAIAEVAHA--HGVPLIVDNTFATPYL-CRPIDHGADIVVH  199 (418)
T ss_pred             ----CHHHHHHhcCc----CCeEEEEECCCCCCCeecCHHHHHHHHHH--cCCEEEEECCCchhhc-CCchhcCCeEEEE
Confidence                79999999874    56999999999999999999999999999  9999999999886532 2223457999999


Q ss_pred             cCCCcccCC-CcceEEEecH
Q 015729          198 GSQKALSLP-TGMGIVCASP  216 (401)
Q Consensus       198 s~~K~l~g~-~g~G~l~~~~  216 (401)
                      |.+|++++. -.+|++++++
T Consensus       200 S~sK~l~g~G~~lGg~v~~~  219 (418)
T TIGR01326       200 SATKYIGGHGTAIGGVIVDG  219 (418)
T ss_pred             CccccccCCccceEEEEEec
Confidence            999999642 2367777654

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.88  E-value=2.5e-20  Score=178.26  Aligned_cols=158  Identities=18%  Similarity=0.187  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCC
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE  119 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  119 (401)
                      ....++++.++++.|.+.   .+++++|++|+.+++.+++++||+|+++.+.|.+..  +...+...|++++.++.+   
T Consensus        63 p~~~~le~~lA~l~g~~~---al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~---  136 (427)
T PRK05994         63 PTNAVLEERVAALEGGTA---ALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADAD---  136 (427)
T ss_pred             ccHHHHHHHHHHHhCCCc---EEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCC---
Confidence            457789999999999876   678899999999999889999999999999877654  344567789999988754   


Q ss_pred             CCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecC
Q 015729          120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS  199 (401)
Q Consensus       120 ~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~  199 (401)
                        |++++++++++    ++++|++++++||+|.+.|+++|.++|++  +|+++|+|++++.+.. ......++|+++.|.
T Consensus       137 --d~~~l~~ai~~----~tklV~vesp~NptG~v~dl~~I~~la~~--~gi~livD~a~a~~~~-~~pl~~gaDivv~S~  207 (427)
T PRK05994        137 --DPASFERAITP----RTKAIFIESIANPGGTVTDIAAIAEVAHR--AGLPLIVDNTLASPYL-IRPIEHGADIVVHSL  207 (427)
T ss_pred             --CHHHHHHhcCc----CCeEEEEECCCCCCCeecCHHHHHHHHHH--cCCEEEEECCcccccc-CCccccCCcEEEEcC
Confidence              78999998874    56999999999999999999999999999  9999999999986543 233457899999999


Q ss_pred             CCcccCCCc-ceEEEe
Q 015729          200 QKALSLPTG-MGIVCA  214 (401)
Q Consensus       200 ~K~l~g~~g-~G~l~~  214 (401)
                      +|+++|+.+ +|.+++
T Consensus       208 tK~lgg~~~~~gG~v~  223 (427)
T PRK05994        208 TKFLGGHGNSMGGIIV  223 (427)
T ss_pred             ccccCCCCCcEEEEEE
Confidence            999976543 343333

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.88  E-value=3e-20  Score=176.51  Aligned_cols=308  Identities=12%  Similarity=0.081  Sum_probs=197.5

Q ss_pred             CCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--CCCCCeEEEEcC
Q 015729           15 PGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLI   92 (401)
Q Consensus        15 ~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~~~gd~vl~~~~   92 (401)
                      .++..+.+++.+++.+..... .....+...++.+.+.+..+.   +.++++++|++|++.++...  ....++|++.+.
T Consensus        45 ~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~~---~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~  120 (377)
T PRK02936         45 HCHPTVTKAVQEQLDDIWHVS-NLFTNSLQEEVASLLAENSAG---DLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQ  120 (377)
T ss_pred             CCCHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHhcCCC---CEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECC
Confidence            344444455555554421111 111123334444444444332   35899999999999998642  234467999988


Q ss_pred             CcchHHHHHHHHHcCC------------cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc----h
Q 015729           93 GQFSLLWIDQQQRLNF------------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----L  156 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l  156 (401)
                      ++|+..+..... .+.            .+..++.+     |++++++.+.    ++++++++..++++.|...+    +
T Consensus       121 ~~Hg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~----~~~~~ii~e~i~~~~G~~~~~~~~l  190 (377)
T PRK02936        121 SFHGRTFGTMSA-TGQEKIKEGFGPLLPGFTHVPFN-----DIKALKEVMN----EEVAAVMLEVVQGEGGVIPADPAFL  190 (377)
T ss_pred             CcCCCcHHhhhc-cCCccccccCCCCCCCceEeCCC-----CHHHHHHhcc----CCeEEEEEecccCCCCCccCCHHHH
Confidence            888765322221 121            11122211     7899999886    35799999999998887753    8


Q ss_pred             HHHHHHhhhcCCCcEEEEecccccCcc---eeccC--cccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccc
Q 015729          157 SKVRKLLDEYRHPALFLVDGVSSICAI---DFRMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF  231 (401)
Q Consensus       157 ~~i~~l~~~~~~~~~li~D~a~~~~~~---~~~~~--~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~  231 (401)
                      ++|.++|++  +|+++|+|++|.....   .+...  ...+|+++  .+|.++++..+|+++.++++.+.+.....    
T Consensus       191 ~~l~~l~~~--~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~t--~sK~l~~G~~ig~v~~~~~~~~~~~~~~~----  262 (377)
T PRK02936        191 QEVQTLCKK--FGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVT--VAKGLGNGIPVGAMIGKKELGTAFGPGSH----  262 (377)
T ss_pred             HHHHHHHHH--cCCEEEEeccccCCCcCchhhHHHhhCCCCcEEE--EcccccCCCccEEEEEcHHHHhhccCCCC----
Confidence            899999999  9999999999863211   11111  22356654  56999765557999999988776643210    


Q ss_pred             cchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeE
Q 015729          232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVT  309 (401)
Q Consensus       232 ~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~  309 (401)
                                    ...++.++..++++.++++.+..+   ...++..++.+++++.|++.  ++.......  ..+.++
T Consensus       263 --------------~~t~~~~~~~~aaa~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~--~~g~~~  323 (377)
T PRK02936        263 --------------GSTFGGNPLAMAAAKEVLQVIKQP---SFLEEVQEKGEYFLQKLQEELEHLECVKNIR--GKGLMI  323 (377)
T ss_pred             --------------CCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhhCCcEEeEe--ecceEE
Confidence                          112245667778888888876432   35567778888888888773  343322111  134578


Q ss_pred             EEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          310 AVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       310 ~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      ++.+++  +...+.+.|.++ ||.+.++    ..+++||++...++++++++++++|++++
T Consensus       324 ~i~~~~--~~~~~~~~l~~~-gv~v~~~----g~~~lRi~p~~~~~~~~i~~~i~~l~~~~  377 (377)
T PRK02936        324 GIECTE--EVAPVIEQLREE-GLLVLSA----GPNVIRLLPPLVVTKEELDQAVYLLKKVL  377 (377)
T ss_pred             EEEecc--hHHHHHHHHHHC-CeEEecC----CCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence            888854  366788888766 9888754    24689999877789999999999998753

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.88  E-value=6e-20  Score=173.67  Aligned_cols=300  Identities=11%  Similarity=0.121  Sum_probs=198.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChh-HHHHHHHhccC--C-CCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGT-GAWESALTNTL--S-PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES  115 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t-~a~~~~~~~~~--~-~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~  115 (401)
                      ...+..++++.+++++|.+.....++++|+| .++.+++.++-  . +||.|+++...|.+..  +.+...|++++.++.
T Consensus       103 ~~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~--kAi~~~G~~pv~Vd~  180 (444)
T TIGR03531       103 LYKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCI--KAISTAGFEPRVIET  180 (444)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHH--HHHHHcCCeEEEeee
Confidence            4566889999999999998444478889999 57777765532  2 5899999988766654  678889999999995


Q ss_pred             ---CCCCCCChHHHHHHHhccCCCCceEEEEEecC-CCcccccchHHHHHHhhhcCCCcEEEEecccccCccee-----c
Q 015729          116 ---DWGEGAKLDVLASKLAADTAHTIKAICIVHNE-TATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF-----R  186 (401)
Q Consensus       116 ---~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~-n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~-----~  186 (401)
                         +....+|++++++++++.+ .+..++++..++ +..|...|+++|.++|++  +|+++|+|+||+.++..+     .
T Consensus       181 ~~d~~~~~iD~e~Le~aIt~~~-~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k--~gI~lIvDaAyg~~~~~~~~~~~~  257 (444)
T TIGR03531       181 VLDGDELTTDVEDIERAIEEIG-PDNILCVLSTTSCFAPRSPDDIEEIAKICAN--YDIPHIVNNAYGLQSNKYMELINK  257 (444)
T ss_pred             eecCcCCCcCHHHHHHHHHhcc-CCCEEEEEEcCCcCCCcchhCHHHHHHHHHH--cCCEEEEECcCcCcChhhhhhhhc
Confidence               3346789999999998532 133444544443 344578899999999999  999999999999765332     1


Q ss_pred             cCcc-cceEEEecCCCcccCCCcceEEEe-cHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHH
Q 015729          187 MDEW-GIDVALTGSQKALSLPTGMGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALD  264 (401)
Q Consensus       187 ~~~~-~~di~~~s~~K~l~g~~g~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~  264 (401)
                      ..+. .+|++++|+||++..+.+.|++++ ++++.+.+....                .+.    ..+.. ...+..++.
T Consensus       258 g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~y----------------~g~----~~~s~-~~~~~~~ll  316 (444)
T TIGR03531       258 AIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKSY----------------PGR----ASASP-SLDVLITLL  316 (444)
T ss_pred             cccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHhc----------------cCC----CCChH-HHHHHHHHH
Confidence            1112 479999999999976666677767 566665554321                011    01111 123344444


Q ss_pred             HHHHhcHHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCCceeEEEEcC--CCCCHHHHHHHHHhhCCeE----E
Q 015729          265 LIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFSDTVTAVIVP--SHINSSEIVRRAWQRYNLS----L  334 (401)
Q Consensus       265 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~L~~~~~i~----v  334 (401)
                      .+..+++++..++..++++++.+.|+++    |-.+.....+   +.-+++.+.  .+.+...+...|..+ +|.    |
T Consensus       317 ~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n---~is~~~~~~~~~~~~~~~~g~~l~~~-~v~g~r~v  392 (444)
T TIGR03531       317 SLGSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPEN---PISSAMTLSTLKGKDPTMLGSMLYSR-RVTGPRVV  392 (444)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCC---ceeEEEecccccccCHHHHHHHHHhC-CCCCceee
Confidence            4455678899999999999999999874    6666543222   222334441  133566777777655 442    2


Q ss_pred             ccCCCCC----------------CCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          335 GLGLNKV----------------AGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       335 ~~g~~~~----------------~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      .++....                ...|+-+.+.--.+++|+|.++++++++
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~  443 (444)
T TIGR03531       393 TNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS  443 (444)
T ss_pred             cCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence            2332100                0113444444456899999999999875

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.88  E-value=5.4e-20  Score=175.66  Aligned_cols=296  Identities=16%  Similarity=0.076  Sum_probs=199.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cC---CCCCeEEEEcCCcchHHHHHHHHHcC--------
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TL---SPGDRIISFLIGQFSLLWIDQQQRLN--------  107 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~---~~gd~vl~~~~~~~~~~~~~~~~~~g--------  107 (401)
                      .+...++.++|.+...... ..+.|+++|++|++.++.-  ..   ....+|+....+||+.....+.....        
T Consensus       116 ~~~~~~lAe~L~~~~p~~~-~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~  194 (442)
T TIGR03372       116 DPLRALLAKTLAALTPGKL-KYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFM  194 (442)
T ss_pred             CHHHHHHHHHHHHhCCCCc-CEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCC
Confidence            4555678888888765433 3589999999999998842  22   12457888888888876333221100        


Q ss_pred             ---CcEEEEeCCCCCCCChHHHHHHHhc--cCCCCceEEEEEecCCCcccccc----hHHHHHHhhhcCCCcEEEEeccc
Q 015729          108 ---FNVDVVESDWGEGAKLDVLASKLAA--DTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVS  178 (401)
Q Consensus       108 ---~~~~~v~~~~~~~~d~~~le~~~~~--~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~  178 (401)
                         ..+..++.+     |.+.+++.++.  ...+++.++++.......|...|    ++++.++|++  +|+++|+|+++
T Consensus       195 p~~~~~~~~p~~-----d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~--~g~llI~DEV~  267 (442)
T TIGR03372       195 PLLPGFHHVAFG-----DIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDE--FGALLILDEVQ  267 (442)
T ss_pred             CCCCCCEEeCCC-----CHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHH--cCCEEEEeecc
Confidence               012223222     67777777753  11146889999998888899887    8999999999  99999999998


Q ss_pred             cc-Ccc--eecc--CcccceEEEecCCCcccCC-CcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCc
Q 015729          179 SI-CAI--DFRM--DEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPS  252 (401)
Q Consensus       179 ~~-~~~--~~~~--~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  252 (401)
                      .. |-.  .+..  ....+|++++  .|.++++ .++|.++.++++.+.+...   .           +.-++  +++.+
T Consensus       268 tG~GRtG~~~a~e~~gv~PDivt~--gK~lg~G~~Pigavv~~~~i~~~~~~~---~-----------~~~~~--T~~gn  329 (442)
T TIGR03372       268 TGMGRTGKMFACEHEGVQPDILCL--AKALGGGVMPIGATIATEAVFSVLFDN---P-----------FLHTT--TFGGN  329 (442)
T ss_pred             cCCCccccchhhhhcCCCCCeeee--hhhhcCCcccceEEEecHHHHHhhhcc---C-----------ccccC--CCCCC
Confidence            53 211  1112  2234788775  5999776 4688888998887766321   0           00011  23346


Q ss_pred             HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCc-cccCCCccCCceeEEEEcCCCCCHHHHHHHHHhh
Q 015729          253 IQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLK-NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQR  329 (401)
Q Consensus       253 ~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  329 (401)
                      +..+++..++++.+.+++   ..++.++..+++++.|+++  .++ ....  ....+.++.+++.+......+.+.|+++
T Consensus       330 p~~~Aaa~a~L~~i~~~~---l~~~~~~~G~~l~~~L~~l~~~~~~~i~~--vRG~Gl~~giel~~~~~~~~i~~~l~~~  404 (442)
T TIGR03372       330 PLACAAALATINELLEKN---LPAQAAIKGDFLLDGFQQLAAEYPDLIIE--ARGKGLLMAIEFRDNEIGYAFAKELFQQ  404 (442)
T ss_pred             HHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHhCCCceEE--EecceEEEEEEeCChHHHHHHHHHHHHC
Confidence            677888899999887754   5667788888888888875  233 2211  1234567778874332345788888876


Q ss_pred             CCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          330 YNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       330 ~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                       ||.+.....  .++.+||.+...+|++|+|++++++++++
T Consensus       405 -Gvl~~~~~~--~~~~lr~~Ppl~~t~~~id~~~~~l~~~~  442 (442)
T TIGR03372       405 -NILVAGTLN--NAKSIRIEPPLTITIEQCALVIKAAKDAL  442 (442)
T ss_pred             -CcEEeecCC--CCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence             998864322  24689999988999999999999998763

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.88  E-value=5.8e-20  Score=176.67  Aligned_cols=305  Identities=15%  Similarity=0.083  Sum_probs=204.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCC--C-CCeEEEEcCCcchHHHHHHHHHcCCcEE--EE
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLS--P-GDRIISFLIGQFSLLWIDQQQRLNFNVD--VV  113 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~--~-gd~vl~~~~~~~~~~~~~~~~~~g~~~~--~v  113 (401)
                      .+...++.++|.+...... ..+.|+++|++|++.++..  ...  + ..+|+....+||+.....+.....-...  +.
T Consensus       123 ~~~~~~lae~L~~~~p~~~-~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~  201 (459)
T PRK11522        123 DPLRAMLAKTLAALTPGKL-KYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFM  201 (459)
T ss_pred             CHHHHHHHHHHHHhCCCCC-CEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCC
Confidence            4556677888887764333 3589999999999998843  222  2 3468888888888763222221110000  01


Q ss_pred             eCCCCC----CCChHHHHHHHhcc--CCCCceEEEEEecCCCcccccc----hHHHHHHhhhcCCCcEEEEecccccCcc
Q 015729          114 ESDWGE----GAKLDVLASKLAAD--TAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI  183 (401)
Q Consensus       114 ~~~~~~----~~d~~~le~~~~~~--~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~  183 (401)
                      +..++.    -.|.+++++.++..  ..+++.++++.......|.+.|    ++++.++|++  +|+++|+||++.....
T Consensus       202 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~--~g~llI~DEV~tG~GR  279 (459)
T PRK11522        202 PLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDE--FGALLILDEVQTGMGR  279 (459)
T ss_pred             CCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHH--cCCEEEeccceecCCc
Confidence            111100    01678888887631  1246789999999988999887    8999999999  9999999999863211


Q ss_pred             -----eeccCcccceEEEecCCCcccCC-CcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHH
Q 015729          184 -----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLY  257 (401)
Q Consensus       184 -----~~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  257 (401)
                           .++.....+|+++++  |.++++ .++|.++.+++..+.+...   .           +.-++  ++..++..++
T Consensus       280 tG~~~a~e~~gv~PDivt~g--K~lggG~~Pigav~~~~~i~~~~~~~---~-----------~~~~~--T~~gnp~~~A  341 (459)
T PRK11522        280 TGKMFACEHENVQPDILCLA--KALGGGVMPIGATIATEEVFSVLFDN---P-----------FLHTT--TFGGNPLACA  341 (459)
T ss_pred             cchhhhhhccCCCCCEEEec--hhhhCCCccceeEEEcHHHHHHhccC---C-----------cccCC--CCCCCHHHHH
Confidence                 111222347888665  999776 4689999999887755321   0           00011  2334677788


Q ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCc-cccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEE
Q 015729          258 GLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLK-NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSL  334 (401)
Q Consensus       258 a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v  334 (401)
                      +..++++.+.++   +..++..++.++|++.|+++  .++ .+..  ....+.++.+.+.+......+.+.|+++ ||.+
T Consensus       342 aala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~--VrG~Gl~~giel~~~~~~~~i~~~l~~~-Gvl~  415 (459)
T PRK11522        342 AALATINVLLEQ---NLPAQAEQKGDYLLDGFRQLAREYPDLVQE--ARGKGMLMAIEFVDNEIGYNFASEMFRQ-RVLV  415 (459)
T ss_pred             HHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHhCCCceee--EEeceeEEEEEecCchHHHHHHHHHHHC-CeEE
Confidence            889999988765   36788899999999999886  343 2221  1134567778774322345788888876 9998


Q ss_pred             ccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          335 GLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       335 ~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      .+...  .++.+|+.+...+|++|+|+++++++++++++.
T Consensus       416 ~~~~~--~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~~~  453 (459)
T PRK11522        416 AGTLN--NAKTIRIEPPLTLTIEQCEQVLKAARKALAAMR  453 (459)
T ss_pred             EecCC--CCCEEEEECCccCCHHHHHHHHHHHHHHHHHHH
Confidence            64421  257899998889999999999999999997754

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.88  E-value=1.8e-20  Score=178.73  Aligned_cols=305  Identities=13%  Similarity=0.080  Sum_probs=189.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      .....++++.|+++.|.+.   .+++++|++|+..++.+++++||+|+++.+.|.+..  +.......|+++..++.   
T Consensus        57 ~pt~~~Le~~lA~l~g~~~---~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~---  130 (425)
T PRK06084         57 NPTNDVLEQRVAALEGGVG---ALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAH---  130 (425)
T ss_pred             CchHHHHHHHHHHHhCCCc---eeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECC---
Confidence            3556799999999998654   678889999999999999999999999998777544  22222335666666653   


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                        .|++++++++++    ++++|++++++||+|.+.|+++|.++|++  +|+++|+|++++.+... .....++|+++.|
T Consensus       131 --~d~e~le~ai~~----~tklV~lesp~NPtG~v~dl~~I~~la~~--~~i~vVvD~a~a~~~~~-~p~~~gaDivv~S  201 (425)
T PRK06084        131 --DDIAALEALIDE----RTKAVFCESIGNPAGNIIDIQALADAAHR--HGVPLIVDNTVATPVLC-RPFEHGADIVVHS  201 (425)
T ss_pred             --CCHHHHHHHhcc----CCcEEEEeCCCCCCCeecCHHHHHHHHHH--cCCEEEEECCCcccccC-ChhhcCCCEEEEC
Confidence              389999999974    56999999999999999999999999999  99999999999866442 2335689999999


Q ss_pred             CCCcccCCC-cc-eEEEecHHH-HHH----hccCCC-Cccccch--HH------HH----HHhhcCCCCCCCCcHHHHHH
Q 015729          199 SQKALSLPT-GM-GIVCASPKA-LEA----SKTAKS-VRVFFDW--KD------YI----KFYNLGTFWPYTPSIQLLYG  258 (401)
Q Consensus       199 ~~K~l~g~~-g~-G~l~~~~~~-~~~----~~~~~~-~~~~~~~--~~------~~----~~~~~g~~~~~~~~~~~~~a  258 (401)
                      .+|+++|+. .+ |+++.++.. ...    ...... ...++.+  ..      ..    .....+.  ....+...++ 
T Consensus       202 ~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--g~~l~~~~a~-  278 (425)
T PRK06084        202 LTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNM--GAALSPFNAF-  278 (425)
T ss_pred             chhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhc--CCCCCHHHHH-
Confidence            999997543 23 555543321 111    100000 0001100  00      00    0001111  2234443222 


Q ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCc-cccCC-Cc-----------cC-CceeEEEEcCCCC-CHHHH
Q 015729          259 LRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLK-NCTQK-EE-----------WF-SDTVTAVIVPSHI-NSSEI  322 (401)
Q Consensus       259 ~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~-~~-----------~~-~~~~~~~~~~~~~-~~~~l  322 (401)
                        ..+..+  ..+..+.++..+++..+.+.|++. ++. +..+. ++           .. .+.++.|++..+. ...++
T Consensus       279 --l~lrgl--~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~~gg~~s~~~~~~~~~~~~f  354 (425)
T PRK06084        279 --LILQGL--ETLALRMERHTENALKVARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPASILSFGIKGGQAAGARF  354 (425)
T ss_pred             --HHHcCc--CcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCcccHHHHHHhCCCCcceEEEEEecCCHHHHHHH
Confidence              222211  136778899999999999999985 432 11110 00           02 3568889984321 12233


Q ss_pred             HHHHHhhCCeEEccCCC-----------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          323 VRRAWQRYNLSLGLGLN-----------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       323 ~~~L~~~~~i~v~~g~~-----------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .+.|. -+++.+..|..                       ....+.+|||+..    ||.|.+++-|+.+|+.
T Consensus       355 ~~~l~-l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~~~gi~~~liR~svGl----Ed~~dLi~dl~~Al~~  422 (425)
T PRK06084        355 IDALK-LVVRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSRDMVRLSIGI----EHIDDIIADLAQALDA  422 (425)
T ss_pred             HHhCC-cceeccccCCCceeeeCCCcCCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHh
Confidence            33332 22222222211                       0123569998644    7778888888777753

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.88  E-value=1.1e-20  Score=176.95  Aligned_cols=228  Identities=19%  Similarity=0.146  Sum_probs=157.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH-HHHHH-HHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL-WIDQQ-QRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~~~~~-~~~g~~~~~v~~~~~  118 (401)
                      .....+++++++++.|.+.   +++++||++|+.+++ .++++||+|+++.+.|.+.. +.... ...+.++..      
T Consensus        53 ~p~~~~le~~lA~leg~~~---~v~~~sG~aAi~~~l-~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~------  122 (364)
T PRK07269         53 NPTRAKLEETLAAIESADY---ALATSSGMSAIVLAF-SVFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTY------  122 (364)
T ss_pred             CccHHHHHHHHHHHhCCCe---EEEeCCHHHHHHHHH-HHhCCCCEEEEecCCcCchHHHHHHHHhcCcEEEEe------
Confidence            4557899999999998654   899999999999888 46799999999988655443 21221 211222111      


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                       ..|++++++++++    ++++|++++|+||+|.+.|+++|.++|++  +|+++++|++++.+... ..-..++|++++|
T Consensus       123 -~~d~~~l~~~i~~----~TklV~lesP~NPtg~~~di~~I~~la~~--~gi~vvvD~t~~~~~~~-~pl~~gaDivv~S  194 (364)
T PRK07269        123 -ANTEEELIAAIEE----DTDIVYIETPTNPLMVEFDIEKVAKLAHA--KGAKVIVDNTFYSPIYQ-RPIELGADIVLHS  194 (364)
T ss_pred             -cCCHHHHHHhcCc----CceEEEEECCCCCCCeeeCHHHHHHHHHH--cCCEEEEECCCcccccC-CchhhCCcEEEec
Confidence             2479999999874    56999999999999999999999999999  99999999997654322 2335689999999


Q ss_pred             CCCcccCCCc--ceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHH
Q 015729          199 SQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI  275 (401)
Q Consensus       199 ~~K~l~g~~g--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  275 (401)
                      .+|+++|...  .|+++++ +++.+++...             .. ..|    ...+...++-...+++     .++.++
T Consensus       195 ~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~-------------~~-~~G----~~~s~~~a~l~~~~L~-----tL~~r~  251 (364)
T PRK07269        195 ATKYLSGHNDVLAGVVVTNDLELYEKLFYN-------------LN-TTG----AVLSPFDSYLLMRGLK-----TLSLRM  251 (364)
T ss_pred             CceeccCCCcccceEEEeCcHHHHHHHHHH-------------HH-HhC----CCCCHHHHHHHHcCCC-----cHHHHH
Confidence            9999976543  3777775 4554544311             00 012    1234432222222222     367788


Q ss_pred             HHHHHHHHHHHHHHHHc-CCcc-ccCCCccCCceeEEEEc
Q 015729          276 ERHRRLGKATRLAVEAW-GLKN-CTQKEEWFSDTVTAVIV  313 (401)
Q Consensus       276 ~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~~~~~~~~  313 (401)
                      ++.+++++.+.++|++. ++.. ..+  +  .+.+++|.+
T Consensus       252 ~~~~~na~~~a~~L~~~p~v~~v~yp--g--~gg~~sf~~  287 (364)
T PRK07269        252 ERSTANAQEVVAFLKKSPAVKEVLYT--G--KGGMISFKV  287 (364)
T ss_pred             HHHHHHHHHHHHHHHhCCCccEEeCC--C--cCcEEEEEE
Confidence            99999999999999875 4332 222  1  345777887

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.88  E-value=1.6e-19  Score=173.37  Aligned_cols=330  Identities=16%  Similarity=0.135  Sum_probs=211.8

Q ss_pred             cccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeE
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRI   87 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~v   87 (401)
                      +.+++.++..+.+++.+.+.+....+......+...++-++|.+..+... ..+.|+++|++|++.++..  ......+|
T Consensus        52 ~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~-~~v~f~~sGsEAve~AlklAr~~tgr~~i  130 (443)
T PRK08360         52 VQNVGHNNPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIEIAPGDN-PKVSFGLSGSDANDGAIKFARAYTKRRKI  130 (443)
T ss_pred             hcccCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCCC-CEEEEcCCHHHHHHHHHHHHHHhcCCCeE
Confidence            33444444444444444444321111111223445677788888775432 3599999999999998843  23445678


Q ss_pred             EEEcCCcchHHHHHHHHHcCC------------cEEEEeCCCCCC------------CChHHHHHHHhcc-CCCCceEEE
Q 015729           88 ISFLIGQFSLLWIDQQQRLNF------------NVDVVESDWGEG------------AKLDVLASKLAAD-TAHTIKAIC  142 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~------------~d~~~le~~~~~~-~~~~~~~i~  142 (401)
                      +....+||+.....+.. .+.            .+..++.+....            -+.+.+++.+... ..+++++|+
T Consensus       131 i~~~~~yHG~t~~a~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi  209 (443)
T PRK08360        131 LSYLRSYYGSTYGAMSL-TGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALF  209 (443)
T ss_pred             EEEeCCcCCcCHHHHHh-cCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEE
Confidence            88888888875322221 111            123333322100            1234566666532 125789999


Q ss_pred             EEecCCCcccccc----hHHHHHHhhhcCCCcEEEEecccccCcc---e--eccCcccceEEEecCCCcccCCCcceEEE
Q 015729          143 IVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLPTGMGIVC  213 (401)
Q Consensus       143 ~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~--~~~~~~~~di~~~s~~K~l~g~~g~G~l~  213 (401)
                      +...++++|.+.+    +++|.++|++  +|+++|+|++|.....   .  .......+|++++  +|.++++.++|+++
T Consensus       210 ~eP~~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitl--sK~l~~G~pigav~  285 (443)
T PRK08360        210 AEPIQGDAGMIVPPEDYFKKLKKILDE--HGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITL--GKPLGGGLPISATI  285 (443)
T ss_pred             ECCccCCCCCcCCCHHHHHHHHHHHHH--cCCEEEEeccccCCCcCccchhhhhcCCCCCEEEe--cccccCCceeEEEE
Confidence            9988899998876    7889999999  9999999999873211   1  1111234677765  69997666689999


Q ss_pred             ecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-
Q 015729          214 ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-  292 (401)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-  292 (401)
                      +++++.+.+....                  ..+.++.++..++++.++++.+.+.+   ..++.+++.+++++.|+++ 
T Consensus       286 ~~~~i~~~~~~~~------------------~~~T~~~~p~~~aaa~a~l~~l~~~~---l~~~~~~~g~~l~~~L~~l~  344 (443)
T PRK08360        286 GRAEIMDSLPPLA------------------HAFTLSGNPVASAAALAVIEEIEEKN---LLKRAEKLGNYTKKRLEEMK  344 (443)
T ss_pred             EcHHHHhhhcCCC------------------CCCCCCcCHHHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHH
Confidence            9999877765321                  11133455666788888888887653   6778888888888888875 


Q ss_pred             -CCccccCCCccCCceeEEEEcCCC--------CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHH
Q 015729          293 -GLKNCTQKEEWFSDTVTAVIVPSH--------INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCL  363 (401)
Q Consensus       293 -g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~  363 (401)
                       ..++...  ....+.++.+++.+.        ..+..+...|.++ ||.+.+.    .++.+|+.+...+|++|+|+++
T Consensus       345 ~~~~~v~~--vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~----~~~~lr~~P~l~~t~~~id~~~  417 (443)
T PRK08360        345 KKHELIGD--VRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWEL-GLIVTFF----SGNVLRIQPPLTIEKEVLDEGL  417 (443)
T ss_pred             HhCCCeee--eeccceEEEEEEecCCcccCccHHHHHHHHHHHHHC-CeEEeec----CCCEEEEeCCCCCCHHHHHHHH
Confidence             3443321  123456677766211        0134677778766 9887532    2578999998899999999999


Q ss_pred             HHHHHHHHhc
Q 015729          364 AGVEMILKDV  373 (401)
Q Consensus       364 ~~i~~~l~~~  373 (401)
                      ++++++++++
T Consensus       418 ~~l~~~l~~~  427 (443)
T PRK08360        418 DILEEAIEDV  427 (443)
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.87  E-value=4e-20  Score=172.85  Aligned_cols=290  Identities=18%  Similarity=0.128  Sum_probs=189.0

Q ss_pred             cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCC
Q 015729           39 AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESD  116 (401)
Q Consensus        39 ~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~  116 (401)
                      ........+++.|+++.|.+.   ++++++|..|+..++.+++++||+|+++...|.+..  ........|+++.+++..
T Consensus        52 ~gnPt~~~le~~la~Le~g~~---a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~  128 (386)
T PF01053_consen   52 YGNPTVRALEQRLAALEGGED---ALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPT  128 (386)
T ss_dssp             TC-HHHHHHHHHHHHHHT-SE---EEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTT
T ss_pred             cccccHHHHHHHHHHhhcccc---eeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCch
Confidence            345677899999999998754   788899999999999999999999999999877765  444567789999988754


Q ss_pred             CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCC-cEEEEecccccCcceeccCcccceEE
Q 015729          117 WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP-ALFLVDGVSSICAIDFRMDEWGIDVA  195 (401)
Q Consensus       117 ~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~-~~li~D~a~~~~~~~~~~~~~~~di~  195 (401)
                           |++++++++++    ++++|++..|.||+..+.|+++|.++|++  +| +++++|.+.+.+ ..++.-.+|+|++
T Consensus       129 -----d~~~l~~~l~~----~t~~v~~EspsNP~l~v~Dl~~i~~~a~~--~g~~~~vVDnT~atp-~~~~pL~~GaDiv  196 (386)
T PF01053_consen  129 -----DLEALEAALRP----NTKLVFLESPSNPTLEVPDLEAIAKLAKE--HGDILVVVDNTFATP-YNQNPLELGADIV  196 (386)
T ss_dssp             -----SHHHHHHHHCT----TEEEEEEESSBTTTTB---HHHHHHHHHH--TTT-EEEEECTTTHT-TTC-GGGGT-SEE
T ss_pred             -----hHHHHHhhccc----cceEEEEEcCCCcccccccHHHHHHHHHH--hCCceEEeeccccce-eeeccCcCCceEE
Confidence                 89999999985    66999999999999999999999999999  87 999999997654 2334456789999


Q ss_pred             EecCCCcccCCCc--ceEEEecH--HHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcH
Q 015729          196 LTGSQKALSLPTG--MGIVCASP--KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGL  271 (401)
Q Consensus       196 ~~s~~K~l~g~~g--~G~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~  271 (401)
                      +.|.+|+++|...  .|.+++++  ++.+++...              ....|.    +.++..   +...++-+  .-+
T Consensus       197 v~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~--------------~~~~G~----~~~p~d---a~ll~rgl--~Tl  253 (386)
T PF01053_consen  197 VHSATKYLSGHSDVMGGAVVVNGSSELYDRLREF--------------RRLLGA----TLSPFD---AWLLLRGL--RTL  253 (386)
T ss_dssp             EEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHH--------------HHHHT-----B--HHH---HHHHHHHH--TTH
T ss_pred             EeeccccccCCcceeeEEEEECchhhhhhhhcch--------------hhhcCc----cchHHH---HHHHhcCC--CcH
Confidence            9999999976543  37888765  554444321              011121    243322   22222211  126


Q ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCc-cccC----CCc--------cCCceeEEEEcCCCC-CHHHHHHHHHhhCCeEEcc
Q 015729          272 ENVIERHRRLGKATRLAVEAW-GLK-NCTQ----KEE--------WFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLGL  336 (401)
Q Consensus       272 ~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~----~~~--------~~~~~~~~~~~~~~~-~~~~l~~~L~~~~~i~v~~  336 (401)
                      .-++++..++++.+.+.|++. .++ +.-+    .+.        ...+.++.|+++++. ....+.+.|. -+.+.+..
T Consensus       254 ~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~~~l~-l~~~~~Sl  332 (386)
T PF01053_consen  254 PLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFLDALK-LFSIAPSL  332 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHHHH-S-SSEESSS-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHHhhhh-hHhhhhhc
Confidence            778889999999999999974 322 1111    110        123348899995432 2334444442 11111122


Q ss_pred             CCC-----------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          337 GLN-----------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       337 g~~-----------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      |..                       ...++.+|||+..    ||.+.+++.|+.+|+
T Consensus       333 Gg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl----Ed~~dLi~Dl~~AL~  386 (386)
T PF01053_consen  333 GGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL----EDPDDLIADLEQALE  386 (386)
T ss_dssp             SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S----S-HHHHHHHHHHHHH
T ss_pred             CCcccccccccchhhccCChhhhhccCCCCCeeEEEecc----CCHHHHHHHHHHhcC
Confidence            211                       1123569998654    778888888887764

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.87  E-value=3e-19  Score=172.10  Aligned_cols=300  Identities=14%  Similarity=0.096  Sum_probs=196.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcchHHHHHHHHH-------cCC---
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQFSLLWIDQQQR-------LNF---  108 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~-------~g~---  108 (401)
                      .+...++.+++.+.+.......+.|+++|++|++.++.-  .....++|+....+||+.....+...       .+.   
T Consensus        98 ~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~  177 (443)
T PRK06058         98 YEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPF  177 (443)
T ss_pred             CHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCC
Confidence            345557788888877543223589999999999998852  23344789999999998873332211       110   


Q ss_pred             --cEEEEeCCCCCC------CC--------hHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHhhhcCC
Q 015729          109 --NVDVVESDWGEG------AK--------LDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRH  168 (401)
Q Consensus       109 --~~~~v~~~~~~~------~d--------~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~  168 (401)
                        .+..++.....+      .+        .+.+++.+.  + +++++|++...+...|.+.+    +++|.++|++  +
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~-~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~--~  252 (443)
T PRK06058        178 APEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVG--A-DNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRE--N  252 (443)
T ss_pred             CCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhC--C-CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHH--c
Confidence              122232211110      00        122223222  1 46889998887777787764    7899999999  9


Q ss_pred             CcEEEEecccccCcc---ee--ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhc
Q 015729          169 PALFLVDGVSSICAI---DF--RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL  243 (401)
Q Consensus       169 ~~~li~D~a~~~~~~---~~--~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (401)
                      |+++|.|+++.....   .+  ......+|+++++  |.++++.++|.+++++++.+.+....                 
T Consensus       253 gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~g--K~l~~G~Pi~av~~~~~i~~~~~~~~-----------------  313 (443)
T PRK06058        253 GVVFIADEVQTGFARTGAWFACEHEGIVPDLITTA--KGIAGGLPLSAVTGRAEIMDAPHPGG-----------------  313 (443)
T ss_pred             CCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEc--ccccCCCccEEEEEcHHHHhhccCCC-----------------
Confidence            999999999863321   11  2122347888886  99987777899999999877664321                 


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcCCC---C-
Q 015729          244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSH---I-  317 (401)
Q Consensus       244 g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~---~-  317 (401)
                       ...+++.++..+++..++++.+.++   +..++..+..+++.+.|+++  ...+...  ....+.++.+.+...   . 
T Consensus       314 -~~~T~~gnpl~~aaa~a~L~~~~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~--vrg~G~~~~i~~~~~~~~~~  387 (443)
T PRK06058        314 -LGGTYGGNPVACAAALAAIETIEED---DLVARARQIEALMTDRLRALAAEDDRIGD--VRGRGAMIAIELVKPGTTEP  387 (443)
T ss_pred             -CCCCCCCCHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHhhCCcEEe--eeccceEEEEEEecCCCCCC
Confidence             1113346667788888999888765   36777788888899999875  2333221  113445666666211   1 


Q ss_pred             C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          318 N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       318 ~---~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +   ...+.+.|.++ ||.+.++...  ++++|+.+...+|++|+|+++++++++++++
T Consensus       388 ~~~~~~~l~~~~~~~-Gv~~~~~~~~--~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~~  443 (443)
T PRK06058        388 DAELTKALAAAAHAA-GVIVLTCGTY--GNVIRLLPPLVIGDELLREGLDVLEAALADL  443 (443)
T ss_pred             cHHHHHHHHHHHHHC-CeEEeccCCC--CCEEEEECCCccCHHHHHHHHHHHHHHHHhC
Confidence            1   23566666666 9998765221  5689998888899999999999999998753

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.87  E-value=1.3e-19  Score=173.39  Aligned_cols=300  Identities=20%  Similarity=0.171  Sum_probs=198.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcchHHHHHHHHH-------cC-----
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQFSLLWIDQQQR-------LN-----  107 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~-------~g-----  107 (401)
                      +...++-+++.+.........+.|+++|++|++.++..  ......+|+....+||+.....+...       .+     
T Consensus        83 ~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~  162 (421)
T PRK09792         83 ESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFP  162 (421)
T ss_pred             HHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCC
Confidence            44457777787766433224589999999999998843  23344678999888888763222211       01     


Q ss_pred             CcEEEEeCCCCC-CC----ChHHHHHHHhcc-CCCCceEEEEEecCCCccccc-c---hHHHHHHhhhcCCCcEEEEecc
Q 015729          108 FNVDVVESDWGE-GA----KLDVLASKLAAD-TAHTIKAICIVHNETATGVTN-N---LSKVRKLLDEYRHPALFLVDGV  177 (401)
Q Consensus       108 ~~~~~v~~~~~~-~~----d~~~le~~~~~~-~~~~~~~i~~~~~~n~tG~~~-~---l~~i~~l~~~~~~~~~li~D~a  177 (401)
                      ..+..++.+.+. .+    +++.+++.+.+. ..+++++|++...++++|... |   +++|.++|++  +|+++|+|++
T Consensus       163 ~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~--~g~llI~DEv  240 (421)
T PRK09792        163 GSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDE--HGIVMIADEV  240 (421)
T ss_pred             CCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHH--cCCEEEEecc
Confidence            012333332211 11    347888887631 114689999999999999876 5   7889999999  9999999999


Q ss_pred             cccCcc---eeccC--cccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCc
Q 015729          178 SSICAI---DFRMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPS  252 (401)
Q Consensus       178 ~~~~~~---~~~~~--~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  252 (401)
                      +.....   ++..+  ...+|++++  +|.++++.++|++++++++.+.+.....                +.  +++.+
T Consensus       241 ~tg~gr~G~~~a~~~~~~~pDi~t~--gK~l~~G~pigav~~~~~i~~~~~~~~~----------------~~--T~~gn  300 (421)
T PRK09792        241 QSGFARTGKLFAMDHYADKPDLMTM--AKSLAGGMPLSGVVGNANIMDAPAPGGL----------------GG--TYAGN  300 (421)
T ss_pred             ccCCCCCCchhHHHhcCCCCcEEEe--ehhhcCCCceEEEEEcHHHHhccCCCCc----------------CC--CCCCC
Confidence            774321   11222  234676655  5999877789999999998776643211                11  23456


Q ss_pred             HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcCCC-------CCHHHHH
Q 015729          253 IQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSH-------INSSEIV  323 (401)
Q Consensus       253 ~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~  323 (401)
                      +..+++..++++.+.+.   +..++.++..+++.+.|+++  .++...  .....+.+++++++++       .....+.
T Consensus       301 pl~~aaa~a~l~~l~~~---~~~~~~~~~g~~l~~~l~~l~~~~p~v~--~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~  375 (421)
T PRK09792        301 PLAVAAAHAVLNIIDKE---SLCERANQLGQRLKNTLIDAKESVPAIA--AVRGLGSMIAAEFNDPQTGEPSAAIAQKIQ  375 (421)
T ss_pred             HHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHhCCCcc--eecccceEEEEEecCCccCCcchHHHHHHH
Confidence            66677888888888764   35566667777777777764  233222  1223467888988543       1235677


Q ss_pred             HHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          324 RRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       324 ~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      +.+.++ ||.+.+..  ..++.+|+.+...++++|++++++++.++++
T Consensus       376 ~~~~~~-Gv~i~~~g--~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~  420 (421)
T PRK09792        376 QRALAQ-GLLLLTCG--AYGNVIRFLYPLTIPDAQFDAAMKILQDALS  420 (421)
T ss_pred             HHHHHC-CcEEeecC--CCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence            777766 98885321  1257899987777999999999999999875

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.87  E-value=3.7e-20  Score=173.46  Aligned_cols=297  Identities=17%  Similarity=0.155  Sum_probs=193.5

Q ss_pred             CcccccCCCcCChHHHHHHHccC----cCC-CCCccHHHHHHHHHHHHHHHhcCCC------CceEEecCChhHHHHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRN----NED-YRSPAVPALTKTLLEDIKKIFKTTS------GTPFLIPTTGTGAWESAL   77 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~----~~~-~~~~~~~~~~~~l~~~la~~~g~~~------~~~i~~~~g~t~a~~~~~   77 (401)
                      +.+.+.+++.....-+-+.+...    ... ..++....+..++.+.+++++|.+.      ...-++|+|||+++..++
T Consensus        41 ~~~~~~~~~~~~~~i~~~~l~~~~n~n~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al  120 (373)
T PF00282_consen   41 RFFGFVPGGPSPASILADLLASALNQNGFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYAL  120 (373)
T ss_dssp             TBESSSHT--CHHHHHHHHHHHHHT-BTTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHH
T ss_pred             hHhhhccCCccHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHH
Confidence            44555555544443333444442    211 2345566778899999999999982      134789999999998766


Q ss_pred             hcc----C----CC-----C-CeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCC--CceEE
Q 015729           78 TNT----L----SP-----G-DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAH--TIKAI  141 (401)
Q Consensus        78 ~~~----~----~~-----g-d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~--~~~~i  141 (401)
                      .+.    .    ..     + -.|++++..|++.  .+.+...|+.++.|++++++++|+++|+++++++...  .|-+|
T Consensus       121 ~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~--~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~v  198 (373)
T PF00282_consen  121 LAARERALPRSKAKGVEEIPKPVIYVSEQAHYSI--EKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAV  198 (373)
T ss_dssp             HHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THH--HHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEE
T ss_pred             HHHHHHHhhhhhhcccccccccccccccccccHH--HHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceee
Confidence            321    1    01     1 2466666677766  4788999999999999999999999999998764311  24577


Q ss_pred             EEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcce------eccCcccceEEEecCCCcccCCCcceEEEec
Q 015729          142 CIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID------FRMDEWGIDVALTGSQKALSLPTGMGIVCAS  215 (401)
Q Consensus       142 ~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~------~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~  215 (401)
                      +.+.+++.+|.+.|+++|.++|++  +++|+|+|+|++...+.      ....-.++|.++.++||+++.|.++|+++++
T Consensus       199 vat~Gtt~~Ga~D~l~~i~~i~~~--~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r  276 (373)
T PF00282_consen  199 VATAGTTNTGAIDPLEEIADICEK--YNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVR  276 (373)
T ss_dssp             EEEBS-TTTSBB-SHHHHHHHHHH--CT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEES
T ss_pred             eccCCCcccccccCHHHHhhhccc--cceeeeecccccccccccccccccccccccccccccchhhhhcCCccceeEEee
Confidence            888899999999999999999999  99999999998863321      1222246899999999999999999999988


Q ss_pred             HHH-HHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-C
Q 015729          216 PKA-LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-G  293 (401)
Q Consensus       216 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g  293 (401)
                      ++. +.........+..............+.+....+--.....++.+++.+..+|+.+..++..++++++.+.|++. +
T Consensus       277 ~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~  356 (373)
T PF00282_consen  277 DKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPR  356 (373)
T ss_dssp             SGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred             cccchHHHhccChhhhcccccccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            764 33222111111110000000011111111111224566788999999989999999999999999999999997 6


Q ss_pred             CccccCCCccCCceeEEEEc
Q 015729          294 LKNCTQKEEWFSDTVTAVIV  313 (401)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~  313 (401)
                      +++..+.    ...+++|++
T Consensus       357 ~el~~~~----~~~~vcFr~  372 (373)
T PF00282_consen  357 FELVNEP----DLNIVCFRY  372 (373)
T ss_dssp             EEESSTT----SSSEEEEEE
T ss_pred             EEEEcCC----CceEEEEEe
Confidence            7776532    224666664

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.87  E-value=2e-19  Score=171.71  Aligned_cols=323  Identities=15%  Similarity=0.132  Sum_probs=204.4

Q ss_pred             CChHHHHHHHccCcCC----CCCccHHHHHHHHHHHHHHHhcCC--CCceEEe-cCChhHHHHHHHhc--cCCCCCeEEE
Q 015729           19 HIPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTT--SGTPFLI-PTTGTGAWESALTN--TLSPGDRIIS   89 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~g~~--~~~~i~~-~~g~t~a~~~~~~~--~~~~gd~vl~   89 (401)
                      .-+|.+.+++.++...    +......+...++.++|.+.+..+  ....+.| +++|++|++.++..  .....++|+.
T Consensus        51 h~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~  130 (412)
T TIGR02407        51 HNNPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSNVVS  130 (412)
T ss_pred             CCCHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEE
Confidence            3445566555553321    111112344557777777764222  2223556 58999999998843  2344468999


Q ss_pred             EcCCcchHHHHHHHHH--------cC---CcEEEEeCCCCCC---CChHHHHHHHhccC--CCCceEEEEEecCCCcccc
Q 015729           90 FLIGQFSLLWIDQQQR--------LN---FNVDVVESDWGEG---AKLDVLASKLAADT--AHTIKAICIVHNETATGVT  153 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~--------~g---~~~~~v~~~~~~~---~d~~~le~~~~~~~--~~~~~~i~~~~~~n~tG~~  153 (401)
                      ...+||+.....+...        .+   ..+..+|.+.-..   -+++.+++.+++..  .+++.+|++...++..|..
T Consensus       131 ~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~  210 (412)
T TIGR02407       131 FTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGIN  210 (412)
T ss_pred             ECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCc
Confidence            9999998863322211        11   1223333321000   14677888886421  1357899999999999986


Q ss_pred             cc----hHHHHHHhhhcCCCcEEEEecccc-cCc----ceeccCcccceEEEecCCCcccC-CCcceEEEecHHHHHHhc
Q 015729          154 NN----LSKVRKLLDEYRHPALFLVDGVSS-ICA----IDFRMDEWGIDVALTGSQKALSL-PTGMGIVCASPKALEASK  223 (401)
Q Consensus       154 ~~----l~~i~~l~~~~~~~~~li~D~a~~-~~~----~~~~~~~~~~di~~~s~~K~l~g-~~g~G~l~~~~~~~~~~~  223 (401)
                      .+    +++|.++|++  +|+++|+|+++. +|-    ..++.....+|+++++  |++++ +.++|+++++++. +.+.
T Consensus       211 ~~~~~~l~~l~~lc~~--~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~~--K~lg~~G~pigav~~~~~~-~~~~  285 (412)
T TIGR02407       211 VASDEWLQRLEKLCRR--HDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLS--KSISGYGLPLALTLIKPEL-DVWK  285 (412)
T ss_pred             cCCHHHHHHHHHHHHH--cCCEEEEechhhCCCccchhHHhcccCCCCCEEEec--hhccCCccceeEEEEchhh-hccC
Confidence            53    7889999999  999999999986 221    1223234458888765  99976 6668999998875 4332


Q ss_pred             cCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHH-HHHhcHHHHHHHHHHHHHHHHHHHHHc--CCc-cccC
Q 015729          224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL-IFEEGLENVIERHRRLGKATRLAVEAW--GLK-NCTQ  299 (401)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~-~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~-~~~~  299 (401)
                      ...                .++  .++.++..+++..++++. +.+   .+..++..+..+++++.|+++  .+. ... 
T Consensus       286 ~~~----------------~~~--T~~gnpl~~aaa~a~l~~~i~~---~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~-  343 (412)
T TIGR02407       286 PGE----------------HNG--TFRGNNLAFVTATAALEYYWSD---DAFEKAVQRKSEIIQERLDRIVAEYPELIK-  343 (412)
T ss_pred             CCc----------------cCC--CCCccHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHhhCCCceE-
Confidence            110                011  234556666777888885 443   246677777777777777764  222 111 


Q ss_pred             CCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          300 KEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                       .....+.++++++++......+.+.+.++ ||.+.+...  .++.+|+.+...+|++|++++++++++++++
T Consensus       344 -~vrg~Gl~~~l~l~~~~~~~~~~~~~~~~-Gv~v~~~~~--~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~~  412 (412)
T TIGR02407       344 -QVRGRGLMQGIECGDGDLAGKIAKAAFEN-GLIIETSGP--NDEVIKLLPPLTIDEETLQQGLDILEQAVEE  412 (412)
T ss_pred             -eeecceeEEEEEecChHHHHHHHHHHHHC-CCEEeccCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence             12235678889886543456788888876 998865421  2568999999999999999999999998864

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.87  E-value=3.3e-19  Score=173.02  Aligned_cols=306  Identities=15%  Similarity=0.110  Sum_probs=200.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC-------CC-CCeEEEEcCCcchHHHHHHHHHcCCc---
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SP-GDRIISFLIGQFSLLWIDQQQRLNFN---  109 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~-------~~-gd~vl~~~~~~~~~~~~~~~~~~g~~---  109 (401)
                      .+...++.++|.+.+....-..+.|+++|++|++.++....       .+ .++|+..+.+||+.....+. ..|..   
T Consensus       132 ~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~s-lsg~~~~~  210 (504)
T PLN02760        132 TKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISAS-LSGLPALH  210 (504)
T ss_pred             cHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhh-ccCChhhc
Confidence            34566788888777543222358999999999999885421       12 36788888888887643221 11211   


Q ss_pred             ---------EEEEeCCCCCC-------------CChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHh
Q 015729          110 ---------VDVVESDWGEG-------------AKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLL  163 (401)
Q Consensus       110 ---------~~~v~~~~~~~-------------~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~  163 (401)
                               +..++.+...+             ...+++++.+.+...+++.+|++.......|.+.|    ++++.++|
T Consensus       211 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc  290 (504)
T PLN02760        211 QKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVL  290 (504)
T ss_pred             cCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHH
Confidence                     22233221110             01245777664322246889999988888899887    89999999


Q ss_pred             hhcCCCcEEEEecccc-cCcc--ee--ccCcccceEEEecCCCcccCCC-cceEEEecHHHHHHhccCCCCccccchHHH
Q 015729          164 DEYRHPALFLVDGVSS-ICAI--DF--RMDEWGIDVALTGSQKALSLPT-GMGIVCASPKALEASKTAKSVRVFFDWKDY  237 (401)
Q Consensus       164 ~~~~~~~~li~D~a~~-~~~~--~~--~~~~~~~di~~~s~~K~l~g~~-g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  237 (401)
                      ++  +|+++|+||++. +|-.  .+  +.....+|+++++  |.++++. ++|.+++++++.+.+.......        
T Consensus       291 ~~--~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~lggG~~PigAv~~~~~i~d~~~~~~~~~--------  358 (504)
T PLN02760        291 KK--YDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLA--KALSSAYMPIGAVLVSPEISDVIHSQSNKL--------  358 (504)
T ss_pred             HH--cCCEEEecchhhCCcccchhhHHHhcCCCCcEEEec--ccccCCccccceEeecHHHHhhhhcccccc--------
Confidence            99  999999999994 4321  11  2222347887776  9997653 6788999999887764321000        


Q ss_pred             HHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCC
Q 015729          238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSH  316 (401)
Q Consensus       238 ~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~  316 (401)
                       ..+.-+.  +++.++..+++..++++.+.+++   ..++.+++.++|++.|+++ ...+..  .....+.++.+.+.+.
T Consensus       359 -~~~~h~~--T~~gnPl~~Aaala~Le~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~v~--~vrG~Gl~~gie~~~~  430 (504)
T PLN02760        359 -GSFAHGF--TYSGHPVSCAVALEALKIYKERN---IPEHVNKIAPRFQDGIKAFSGSPIIG--EIRGTGLILGTEFVDN  430 (504)
T ss_pred             -cCcccCC--CCCCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHhcCCCee--eEEeCceEEEEEEecC
Confidence             0011121  33456778888999999887753   6788888889999988876 333222  1223456777776321


Q ss_pred             CC-----------HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          317 IN-----------SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       317 ~~-----------~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ..           ...+.+.|+++ ||.+.+.     +..+|+++...+|++|||+++++++++++++
T Consensus       431 ~~~~~~~~~~~~~~~~i~~~~~~~-Gvl~~~~-----g~~lrl~Ppl~it~eeid~~~~~l~~al~~~  492 (504)
T PLN02760        431 KSPNDPFPAEWGVGAYFGAECKKR-GMLVRVA-----GDNIMMSPPLIITPEEVDELISIYGKALKAT  492 (504)
T ss_pred             CcccccccchhHHHHHHHHHHHhC-CcEEEec-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            11           33567777766 9988642     3578999888899999999999999998765

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.87  E-value=3.1e-19  Score=171.18  Aligned_cols=300  Identities=18%  Similarity=0.112  Sum_probs=192.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcchHHHHHHHHH-------cCC----
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQFSLLWIDQQQR-------LNF----  108 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~-------~g~----  108 (401)
                      +...++.++|.+.......+.+.|+++|++|++.++.-  ......+|+....+||+.....+.-.       .+.    
T Consensus        76 ~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~  155 (420)
T TIGR00700        76 EGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFA  155 (420)
T ss_pred             hHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCC
Confidence            34557777787776432224599999999999998842  23444678888888888763322211       111    


Q ss_pred             -cEEEEeCCCCCC-------C----ChHHHHHHHhc-cCCCCceEEEEEecCCCcccccc----hHHHHHHhhhcCCCcE
Q 015729          109 -NVDVVESDWGEG-------A----KLDVLASKLAA-DTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPAL  171 (401)
Q Consensus       109 -~~~~v~~~~~~~-------~----d~~~le~~~~~-~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~  171 (401)
                       .+..++.....+       .    +++.+++.+.. ...+++.+|++...+..+|.+++    +++|.++|++  +|++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~--~gil  233 (420)
T TIGR00700       156 PEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCRE--HGIV  233 (420)
T ss_pred             CCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHH--cCCE
Confidence             122333321100       0    24567776631 11257899999999888998876    7889999999  9999


Q ss_pred             EEEecccccCcc---ee--ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCC
Q 015729          172 FLVDGVSSICAI---DF--RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTF  246 (401)
Q Consensus       172 li~D~a~~~~~~---~~--~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  246 (401)
                      +|+|+++.....   .+  +.....+|++++  +|.++++.++|++++++++.+.+.....                +  
T Consensus       234 lI~DEV~tg~gr~g~~~a~~~~~~~pDi~~l--sK~l~~G~pig~v~~~~~i~~~~~~~~~----------------~--  293 (420)
T TIGR00700       234 FIADEVQTGFARTGAMFACEHEGPEPDLITT--AKSLADGLPLSGVTGRAEIMDAPAPGGL----------------G--  293 (420)
T ss_pred             EEEEecccCCcccchhHHHhhcCCCCCEEEe--eccccCCcceEEEEecHHHHhhcCCCCc----------------C--
Confidence            999999864321   11  222234777664  5999877778999999998776653211                1  


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcCCC---CC---
Q 015729          247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSH---IN---  318 (401)
Q Consensus       247 ~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~---~~---  318 (401)
                      ..++.++..++++.++++.+.+.+   ..++..+..+++++.|+++  ..+....-.  ..+.++++.+.+.   .+   
T Consensus       294 ~T~~~~pl~~aaa~a~l~~l~~~~---~~~~~~~~g~~l~~~L~~l~~~~~~~~~vr--g~G~~~~i~~~~~~~~~~~~~  368 (420)
T TIGR00700       294 GTYAGNPLACAAALAVLAIIESEG---LIERARQIGRLVTDRLTTLKAVDPRIGDVR--GLGAMIAVELVDPGTTEPDAG  368 (420)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhhCCCEEEee--ccceEEEEEEecCCCCCccHH
Confidence            133455667788888888877654   4555556666677777654  222221111  2356777766211   11   


Q ss_pred             -HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          319 -SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       319 -~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                       ...+.+.+.++ ||.+.++...  ++++||++...++++++++++++|+++++
T Consensus       369 ~~~~l~~~~~~~-Gv~i~p~~~f--~~~lRl~p~l~~~~~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       369 LAERIATAAHAA-GLLLLTCGMF--GNIIRFLPPLTIGDELLSEGLDILCAILA  419 (420)
T ss_pred             HHHHHHHHHHHC-CeEEeccCCC--CCEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence             23455555555 9999876432  57899987666899999999999998874

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.87  E-value=5.3e-19  Score=169.06  Aligned_cols=303  Identities=19%  Similarity=0.155  Sum_probs=199.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcchHHHHHHHH-------HcC----
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQFSLLWIDQQQ-------RLN----  107 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~-------~~g----  107 (401)
                      .+...++-+++.+.+.......+.|+++|++|++.++..  ......+|+....+||+.....+.-       ..+    
T Consensus        82 ~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~  161 (425)
T PRK07495         82 YENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAM  161 (425)
T ss_pred             CHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCC
Confidence            345567778888877543224699999999999998843  2344567898888888876332221       001    


Q ss_pred             -CcEEEEeCCCCC-CCC----hHHHHHHHhc-cCCCCceEEEEEecCCCccccc-c---hHHHHHHhhhcCCCcEEEEec
Q 015729          108 -FNVDVVESDWGE-GAK----LDVLASKLAA-DTAHTIKAICIVHNETATGVTN-N---LSKVRKLLDEYRHPALFLVDG  176 (401)
Q Consensus       108 -~~~~~v~~~~~~-~~d----~~~le~~~~~-~~~~~~~~i~~~~~~n~tG~~~-~---l~~i~~l~~~~~~~~~li~D~  176 (401)
                       ..+..++.+... ..+    ++++++.+.+ ...+++++|++......+|... |   +++|.++|++  +|+++|+|+
T Consensus       162 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~--~g~llI~DE  239 (425)
T PRK07495        162 MPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQ--HGILLIADE  239 (425)
T ss_pred             CCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHH--cCCEEEEec
Confidence             123344443211 122    4455777653 1224688999998877788654 3   7889999999  999999999


Q ss_pred             ccccCcc---eeccCc--ccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCC
Q 015729          177 VSSICAI---DFRMDE--WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP  251 (401)
Q Consensus       177 a~~~~~~---~~~~~~--~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  251 (401)
                      ++.....   .+..+.  ..+|++++  +|.++++.++|++++++++.+.+....                  ....++.
T Consensus       240 v~tG~gr~G~~~a~~~~gv~pDi~tl--sK~l~~G~pigav~~~~~i~~~~~~~~------------------~~~T~~~  299 (425)
T PRK07495        240 VQTGFARTGKLFAMEHHEVAADLTTM--AKGLAGGFPLAAVTGRAEIMDAPGPGG------------------LGGTYGG  299 (425)
T ss_pred             hhhcCCcCCCceeecccCCCCCEEee--hhhhcCCccceEEEEcHHHHhccCCCC------------------cCCCCCC
Confidence            9863211   112222  23566555  599977777899999999877664321                  0113346


Q ss_pred             cHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcCCCC----C---HHHH
Q 015729          252 SIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSHI----N---SSEI  322 (401)
Q Consensus       252 ~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~l  322 (401)
                      ++..+++..++++.+.+.   +..++..++.+++++.|+++  .++....  ....+.++++++.+..    +   ...+
T Consensus       300 ~pl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~--vrG~Gl~~~iel~~~~~~~~~~~~~~~~  374 (425)
T PRK07495        300 NPLGIAAAHAVLDVIEEE---DLCERANQLGNRLKQRLASLRETVPEIAD--IRGPGFMNAVEFNDADSGLPSAEFANRV  374 (425)
T ss_pred             CHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHhhCCCeee--eecCceEEEEEEecCCCCCccHHHHHHH
Confidence            666778888999988764   36677778888888888775  2332221  1134678888873211    1   2356


Q ss_pred             HHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          323 VRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       323 ~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .+.++++ |+.+.....  .++.+||.+...+|++|+|+++++++++++++
T Consensus       375 ~~~~~~~-Gvl~~~~g~--~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~  422 (425)
T PRK07495        375 RLKALEK-GLILLTCGV--HGNVIRFLAPITIQDDVFAEALDILEASILEA  422 (425)
T ss_pred             HHHHHHC-CeEEeecCC--CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence            6777766 988754311  25789999888999999999999999999765

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.87  E-value=7.3e-20  Score=156.70  Aligned_cols=321  Identities=16%  Similarity=0.157  Sum_probs=223.0

Q ss_pred             CcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc-cCCCCCeEEEEcCCcc
Q 015729           17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN-TLSPGDRIISFLIGQF   95 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~-~~~~gd~vl~~~~~~~   95 (401)
                      -+.+..+++++|.+....-.-++.+....+|+++.++++|.+.   .+|+++||.++.++++. +-++|.+|++-+..|.
T Consensus        31 vT~PTdeMr~am~eA~vgDdVyGeD~tt~rLE~~vA~l~GKEA---gLFv~SGTmgNllaIm~Hc~~rg~eii~gd~~HI  107 (384)
T KOG1368|consen   31 VTVPTDEMRRAMAEASVGDDVYGEDPTTNRLEQRVAELFGKEA---GLFVPSGTMGNLLAIMVHCHQRGSEIIVGDRAHI  107 (384)
T ss_pred             ccCChHHHHHHHhhcccCcccccCCccHHHHHHHHHHHhCccc---eeeecccccccHHHHHHHhcCCCceEEeccchhe
Confidence            4556678888888855433334444567799999999999987   68899999999988876 5679999999888766


Q ss_pred             hHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCC----CCceEEEEEecCCCcc-cccchH---HHHHHhhhc
Q 015729           96 SLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA----HTIKAICIVHNETATG-VTNNLS---KVRKLLDEY  166 (401)
Q Consensus        96 ~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~----~~~~~i~~~~~~n~tG-~~~~l~---~i~~l~~~~  166 (401)
                      ..+ -+.+....|+.++.+...+++-+|++++|+++....+    .-+++|.+.+.++.+| .++|++   ++.++|++ 
T Consensus       108 ~~~E~gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~-  186 (384)
T KOG1368|consen  108 HRYEQGGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKR-  186 (384)
T ss_pred             eehhccChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhc-
Confidence            544 3456677788999999888999999999999974221    1478999998887776 888865   57889999 


Q ss_pred             CCCcEEEEecccccCc---ceeccCc--ccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHh
Q 015729          167 RHPALFLVDGVSSICA---IDFRMDE--WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFY  241 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~---~~~~~~~--~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (401)
                       +|+.++.|+|.-+-+   ......+  -.+|.+..+.+|.++.|-| ++++++++++++..-++            +.+
T Consensus       187 -~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVG-SViVG~k~FI~kA~~~R------------Kal  252 (384)
T KOG1368|consen  187 -HGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPVG-SVIVGSKDFIDKARHFR------------KAL  252 (384)
T ss_pred             -cCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCcc-cEEEccHHHHHHHHHHH------------HHh
Confidence             999999998743221   1112222  2468888899999987776 88999999987664321            111


Q ss_pred             hcCCCCCCCCcHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcC-CCCC
Q 015729          242 NLGTFWPYTPSIQLLYGLRAALDLIFE-EGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVP-SHIN  318 (401)
Q Consensus       242 ~~g~~~~~~~~~~~~~a~~~al~~~~~-~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~  318 (401)
                      --|      ....   ++.+|..++.- +.+. ..++-++.+..+.+.++.. ++++-.+..  .++ ++.+.+. ..++
T Consensus       253 GGG------mRQs---GvLaaaaLval~~~~~-~L~~dHk~A~~lAe~~~~~~~i~v~v~a~--etN-iv~~~l~q~~~~  319 (384)
T KOG1368|consen  253 GGG------MRQS---GVLAAAALVALDENVP-LLRADHKRAKELAEYINTPEEIRVEVPAV--ETN-IVNMVLCQARLT  319 (384)
T ss_pred             cCc------hhHH---HHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHhccccceeeecchh--hcc-eeeeecccccCC
Confidence            111      1121   22222222221 1233 6666777888888888876 365544311  233 3334443 3578


Q ss_pred             HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHH-HHHHHhc
Q 015729          319 SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGV-EMILKDV  373 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i-~~~l~~~  373 (401)
                      ++.+++.+.+ +||.+..+..    ..+|+.++.++|.++++.++..+ +.++...
T Consensus       320 ~~~l~~~~~k-~gi~lm~~~s----~r~Rivlh~Qvt~~~ve~~~~~~~k~~~~q~  370 (384)
T KOG1368|consen  320 AEELCKFLEK-NGILLMGGAS----RRIRIVLHHQVTDEDVEYVKSVLSKKFLKQL  370 (384)
T ss_pred             HHHHHHHHHH-CCeEEeeccc----cceEEEEEEecCHHHHHHHHHHHHHHHHhhc
Confidence            9999999965 4998875533    35899999999999999999999 4455443

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.86  E-value=4.8e-19  Score=169.20  Aligned_cols=325  Identities=13%  Similarity=0.076  Sum_probs=214.6

Q ss_pred             CChHHHHHHHccCcCC--CC--CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--C-----CC-CCe
Q 015729           19 HIPDQVIRAMNRNNED--YR--SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--L-----SP-GDR   86 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~-----~~-gd~   86 (401)
                      .-+|++.+++.++...  +.  .....+...++.+++.+...... +.+.|+++|++|++.++...  .     ++ ..+
T Consensus        60 h~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~  138 (429)
T PRK06173         60 YNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPPSL-NKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTK  138 (429)
T ss_pred             CCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCc-CEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcE
Confidence            3446666666664432  11  11223455678888888764322 35999999999999988431  1     12 357


Q ss_pred             EEEEcCCcchHHHHHHHHH-------c--C---CcEEEEeCCCCC------CCChHHHHHHHhccCCCCceEEEEEec-C
Q 015729           87 IISFLIGQFSLLWIDQQQR-------L--N---FNVDVVESDWGE------GAKLDVLASKLAADTAHTIKAICIVHN-E  147 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~-------~--g---~~~~~v~~~~~~------~~d~~~le~~~~~~~~~~~~~i~~~~~-~  147 (401)
                      |+....+||+..+..+...       .  +   ..+..++.+...      .-+++.+++.+.... +++.++++... +
T Consensus       139 ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~-~~iAAvi~EPi~q  217 (429)
T PRK06173        139 FATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKG-DEIAALILEPVVQ  217 (429)
T ss_pred             EEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCC-CcEEEEEEcchhh
Confidence            8888888988654322110       0  0   012233322110      013566788886443 57899999985 7


Q ss_pred             CCcccccc----hHHHHHHhhhcCCCcEEEEecccccCcc---e--eccCcccceEEEecCCCcccCC-CcceEEEecHH
Q 015729          148 TATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLP-TGMGIVCASPK  217 (401)
Q Consensus       148 n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~--~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~  217 (401)
                      ...|...+    ++++.++|++  +|+++|+|++|.....   .  .+.....+|++++  .|.++|+ ..++.++.+++
T Consensus       218 g~gG~~~~~~~yl~~l~~lc~~--~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~--gK~l~gG~~p~~a~~~~~~  293 (429)
T PRK06173        218 GAGGMYFYSPTYLVKARELCDQ--YGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMCI--GKALTGGYLTLSATITTEA  293 (429)
T ss_pred             ccCCcccCCHHHHHHHHHHHHH--cCCeEEecchhcCCCcCCcchHHHhcCCCCCEEEe--ehhhhCCccccceEEecHH
Confidence            77788754    7889999999  9999999999853211   1  1222334788875  5999766 36789999999


Q ss_pred             HHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCcc
Q 015729          218 ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKN  296 (401)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~  296 (401)
                      +.+.+.......           +..++  +++.++..+++..++++.+.+++   ..++..++.++|++.|+++ +++.
T Consensus       294 i~~~~~~~~~~~-----------~~~~~--T~~g~p~~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~~~~~~~  357 (429)
T PRK06173        294 IAQTICSGEAKC-----------FMHGP--TFMANPLACAIAAESIRLLLESP---WQQNIQRIEAQLKQELAPAAEFDS  357 (429)
T ss_pred             HHHHHhcCCCCc-----------cccCC--CCCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHhhcCCC
Confidence            877664311100           11121  22356778888999999887754   5778888899999999875 5443


Q ss_pred             ccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          297 CTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ..  .....+.+..+.+.+..+...+.+.|+++ ||.+.+.     ++.+||.+...+|++|+|+++++++++++++
T Consensus       358 v~--~vRg~Gl~~~iel~~~~~~~~i~~~l~e~-Gi~v~~~-----g~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~  426 (429)
T PRK06173        358 VA--EVRVLGAIGVVEMKEPVNMATLQPRFVEH-GIWVRPF-----GKLVYIMPPFIISPDELSQLTSGLLRVLKQE  426 (429)
T ss_pred             ee--eeeccceEEEEEeCCcccHHHHHHHHHHC-CeEEEec-----CCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence            32  12234567778885444567888989877 9988643     4689999888999999999999999999764

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.86  E-value=8.6e-19  Score=168.58  Aligned_cols=322  Identities=15%  Similarity=0.117  Sum_probs=207.5

Q ss_pred             ChHHHHHHHccCcCC--C--CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCC
Q 015729           20 IPDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIG   93 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~--~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~   93 (401)
                      -+|++.+++.++...  +  ......+...++.++|++.+.......+.|+++|++|++.++..  ......+|+....+
T Consensus        59 ~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~  138 (445)
T PRK08593         59 APPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNA  138 (445)
T ss_pred             CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCC
Confidence            345565555554321  1  11122355667888888887543223599999999999998843  23334678888888


Q ss_pred             cchHHHHHHHHHc---------C---CcEEEEeCCCCCC-----CC-------hHHHHHHHhcc-CCCCceEEEEEecCC
Q 015729           94 QFSLLWIDQQQRL---------N---FNVDVVESDWGEG-----AK-------LDVLASKLAAD-TAHTIKAICIVHNET  148 (401)
Q Consensus        94 ~~~~~~~~~~~~~---------g---~~~~~v~~~~~~~-----~d-------~~~le~~~~~~-~~~~~~~i~~~~~~n  148 (401)
                      ||+.....+....         +   ..+..++.+....     .+       .+++++.+.+. ..+++.+|++..+.+
T Consensus       139 YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g  218 (445)
T PRK08593        139 YHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQG  218 (445)
T ss_pred             cCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccC
Confidence            8887632221110         0   1133344322110     11       24455555421 124689999999988


Q ss_pred             Ccccccc----hHHHHHHhhhcCCCcEEEEecccc-cCcc--ee--ccCcccceEEEecCCCcccCCCcceEEEecHHHH
Q 015729          149 ATGVTNN----LSKVRKLLDEYRHPALFLVDGVSS-ICAI--DF--RMDEWGIDVALTGSQKALSLPTGMGIVCASPKAL  219 (401)
Q Consensus       149 ~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~-~~~~--~~--~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~  219 (401)
                      ..|.+.+    ++++.++|++  +|+++|+||++. +|..  .+  ......+|+++++  |.++++.++|++++++++.
T Consensus       219 ~gG~~~~~~~yl~~l~~lc~~--~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~g--K~l~~G~p~gav~~~~~i~  294 (445)
T PRK08593        219 DGGLLEPVPGYFEALYKFCRE--HGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFG--KSLAGGMPMSAIVGRKEIM  294 (445)
T ss_pred             CCCCcCCCHHHHHHHHHHHHH--cCCEEEEechhhCCCcCchHHHHHhcCCCCCEeeec--ccccCCcccEEEEEcHHHH
Confidence            8898876    8899999999  999999999985 3221  11  1112346877654  9887666689999999987


Q ss_pred             HHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccc
Q 015729          220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNC  297 (401)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~  297 (401)
                      +.+....                  ..++++.++..+++..++++.+.++   +..++..++.+++++.|+++  ..++.
T Consensus       295 ~~~~~~~------------------~~~T~~~~pl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v  353 (445)
T PRK08593        295 ESLEAPA------------------HLFTTGANPVSCAAALATIDMIEDE---SLLQRSAEKGEYARKRFDQWVSKYNFV  353 (445)
T ss_pred             hhhccCC------------------CCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence            7664210                  1123346667788888999988765   46778888888888888875  33333


Q ss_pred             cCCCccCCceeEEEEcCCC----C----CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          298 TQKEEWFSDTVTAVIVPSH----I----NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~----~----~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      ..  ....+.++.+.+...    .    ...++.+.|+++ ||.+.+.    .++.+|+.+...+|++|+|+++++++++
T Consensus       354 ~~--vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~-Gv~~~~~----~~~~lr~~p~l~~t~~~id~~~~~l~~~  426 (445)
T PRK08593        354 GD--VRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEH-GVVIIAV----AGNVLRFQPPLVITYEQLDTALNTIEQA  426 (445)
T ss_pred             EE--EeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHC-CeEEecc----CCCEEEEECCCccCHHHHHHHHHHHHHH
Confidence            21  123445555555211    0    134677778766 9988543    2468999999999999999999999999


Q ss_pred             HHhc
Q 015729          370 LKDV  373 (401)
Q Consensus       370 l~~~  373 (401)
                      ++++
T Consensus       427 l~~~  430 (445)
T PRK08593        427 FTAL  430 (445)
T ss_pred             HHHH
Confidence            8775

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.86  E-value=8e-19  Score=168.03  Aligned_cols=299  Identities=20%  Similarity=0.137  Sum_probs=194.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcchHHHHHHHHHcCC-----------
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQFSLLWIDQQQRLNF-----------  108 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~~g~-----------  108 (401)
                      +...++-+++.++........+.|+++||+|++.++..  ......+|+....+||+.....+.. .+.           
T Consensus        83 ~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~-t~~~~~~~~~~~~~  161 (421)
T PRK06777         83 ASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMAL-TGKVAPYKVGFGPF  161 (421)
T ss_pred             hHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhh-cCCCcccccCCCCC
Confidence            34457777788776533234589999999999998843  2344467888888888876332221 111           


Q ss_pred             --cEEEEeCCCCC-----CCChHHHHHHHhcc-CCCCceEEEEEecCCCcccc-cc---hHHHHHHhhhcCCCcEEEEec
Q 015729          109 --NVDVVESDWGE-----GAKLDVLASKLAAD-TAHTIKAICIVHNETATGVT-NN---LSKVRKLLDEYRHPALFLVDG  176 (401)
Q Consensus       109 --~~~~v~~~~~~-----~~d~~~le~~~~~~-~~~~~~~i~~~~~~n~tG~~-~~---l~~i~~l~~~~~~~~~li~D~  176 (401)
                        .+..++.+...     ..+++.+++.+++. ..+++.++++...++..|.. .|   +++|.++|++  +|+++|+|+
T Consensus       162 ~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~--~g~llI~DE  239 (421)
T PRK06777        162 PGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDE--HGILLIADE  239 (421)
T ss_pred             CCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHH--cCCEEEEec
Confidence              11222222110     01356788877531 11468899999888888865 34   7889999999  999999999


Q ss_pred             ccccCcc---eeccC--cccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCC
Q 015729          177 VSSICAI---DFRMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP  251 (401)
Q Consensus       177 a~~~~~~---~~~~~--~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  251 (401)
                      ++.....   .+...  ...+|+++  .+|.++++.++|+++.++++.+.+.....                +  ..++.
T Consensus       240 v~tg~gr~g~~~~~~~~~~~pDiv~--~sK~l~~G~pigav~~~~~i~~~~~~~~~----------------~--~T~~~  299 (421)
T PRK06777        240 VQTGFARTGKLFAMEYYDVKPDLIT--MAKSLGGGMPISAVVGRAEVMDAPAPGGL----------------G--GTYAG  299 (421)
T ss_pred             hhhCCccCCchhhhhhcCCCCCEEe--eehhhcCCCceEEEEEcHHHHhccCCCCC----------------C--CCCCc
Confidence            9873211   11112  22467765  46999766678999999998776653210                1  13345


Q ss_pred             cHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcCCC---CC----HHHH
Q 015729          252 SIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSH---IN----SSEI  322 (401)
Q Consensus       252 ~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~l  322 (401)
                      ++..+++..++++.+.++   +..++..++.+++++.|+++  ..+....  ....+.++.+.+...   .+    ...+
T Consensus       300 ~p~~~aaa~a~L~~~~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~--vrg~G~~~~i~~~~~~~~~~~~~~~~~l  374 (421)
T PRK06777        300 NPLAVAAALAVLDVIAEE---KLCQRALILGAHLVEVLEKAKASCPAIVD--IRARGSMVAVEFNDPQTGKPSPEFTRQY  374 (421)
T ss_pred             CHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHhCCCeEE--ecCceEEEEEEEecCccCCccHHHHHHH
Confidence            667778888888877653   57788888899999999875  2222211  112344555555221   11    2234


Q ss_pred             HHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          323 VRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       323 ~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      .+.+.++ ||.+.++...  ++++||.+....+++++++++++|++++.
T Consensus       375 ~~~~~~~-Gv~i~~~~~~--g~~lr~~ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        375 QRQALEE-GLLLLSCGVH--GNVIRFLYPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             HHHHHhC-CeEEeecCCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            4445555 9999876322  57999988777899999999999998874

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.86  E-value=2.4e-19  Score=172.67  Aligned_cols=319  Identities=15%  Similarity=0.102  Sum_probs=196.1

Q ss_pred             CChHHHHHHHccCcCCCCC-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcc
Q 015729           19 HIPDQVIRAMNRNNEDYRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQF   95 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~~~~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~   95 (401)
                      ..+|.+++++.+....... ....+...++.++|++++...  +.+++++||++|++.+++.  .....++|+...++||
T Consensus        64 h~~p~v~~ai~~q~~~~~~~~~~~~~~~~lae~l~~~~~~~--~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yh  141 (423)
T TIGR00713        64 HAHPRVVEAVKEALERGTSYGAPTEAEILLAKEIISRVPSV--EMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYH  141 (423)
T ss_pred             CCCHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhCCcc--cEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCC
Confidence            3345555555553322111 123455678999999987643  3599999999999998853  2345689999999988


Q ss_pred             hHHHHHHHH-HcCCcEE---------------EEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc----
Q 015729           96 SLLWIDQQQ-RLNFNVD---------------VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----  155 (401)
Q Consensus        96 ~~~~~~~~~-~~g~~~~---------------~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----  155 (401)
                      +........ ..+....               .+.++.   -|++++++.+++.. +++++|++....+.+|.+.+    
T Consensus       142 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~l~~~i~~~~-~~~aavi~ep~~~~~G~~~~~~~~  217 (423)
T TIGR00713       142 GHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPY---NDLEALEEVFEEYG-EEIAGVIVEPVAGNMGVVPPKPEF  217 (423)
T ss_pred             CChhhhhccccCcccccCCCCCCCCCcccccceEEeCC---CCHHHHHHHHHHcC-CcEEEEEEeCCCCCCCCcCCCHHH
Confidence            864211110 0111000               011111   17899999987533 46788888755555898876    


Q ss_pred             hHHHHHHhhhcCCCcEEEEecccccCcc--ee--ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccc
Q 015729          156 LSKVRKLLDEYRHPALFLVDGVSSICAI--DF--RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF  231 (401)
Q Consensus       156 l~~i~~l~~~~~~~~~li~D~a~~~~~~--~~--~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~  231 (401)
                      +++|.++|++  +|+++|+|++|.....  .+  ......+|++  +.+|.++++.++|++++++++.+.+.....  ..
T Consensus       218 l~~l~~l~~~--~~~llI~DEv~~g~r~g~~~~~~~~~~~pDi~--t~sK~l~~G~pig~v~~~~~i~~~~~~~~~--~~  291 (423)
T TIGR00713       218 LAGLRALTEE--YGSLLIFDEVMTGFRVALGGAQEYFGVEPDLT--TLGKIIGGGLPVGAFGGRREIMERLAPEGP--VY  291 (423)
T ss_pred             HHHHHHHHHH--hCCEEEEEccccccccCcchhHHHhCCCcchh--hhhhhhcCCCceeeeeEHHHHHHhhCcCCC--ee
Confidence            6889999999  9999999999863321  11  1112235755  467999766668999999998887753210  00


Q ss_pred             cchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEE
Q 015729          232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA  310 (401)
Q Consensus       232 ~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~  310 (401)
                      .           +  ..++.++..++++.++++.+.+.+ .++..+....+.+.+.+.+++.++.....    ..+.++.
T Consensus       292 ~-----------~--~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~----~~g~~~~  354 (423)
T TIGR00713       292 Q-----------A--GTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVN----RVGSMFS  354 (423)
T ss_pred             e-----------c--cCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE----eeccEEE
Confidence            0           1  133466677788888888877654 33444444444444454454445443211    1223444


Q ss_pred             EEcCC-C---------CC---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          311 VIVPS-H---------IN---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       311 ~~~~~-~---------~~---~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +.+.. .         .+   ...+.+.|+++ ||.+.++.    .+.+|+++.  ++++|+++++++++++++++
T Consensus       355 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~~l~~~--~t~~~i~~~~~~l~~~l~~~  423 (423)
T TIGR00713       355 LFFTEEEVTNYADAKKSDTELFAKFFHEMLDK-GVFLPPSQ----FEACFLSAA--HTEEDIENTIEAAEEVFAEL  423 (423)
T ss_pred             EEEecCCCCChhhhhcccHHHHHHHHHHHHHC-CeEEecCC----ccceeeECC--CCHHHHHHHHHHHHHHHhhC
Confidence            44421 1         11   22577788875 99986442    135788654  69999999999999998753

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK06062 hypothetical protein; Provisional

Probab=99.86  E-value=1.1e-18  Score=167.87  Aligned_cols=321  Identities=15%  Similarity=0.064  Sum_probs=206.9

Q ss_pred             hHHHHHHHccCcCC--CC-CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcc
Q 015729           21 PDQVIRAMNRNNED--YR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQF   95 (401)
Q Consensus        21 ~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~   95 (401)
                      +|++.+++.++...  +. .....+...++-++|.++..... +.+.|+++|++|++.++..  ......+|+....+||
T Consensus        71 ~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yH  149 (451)
T PRK06062         71 HPKVVAAIQEQAARLCTVAPAHANDARSEAARLIAERAPGDL-SKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYH  149 (451)
T ss_pred             CHHHHHHHHHHHHhcCCcCCccCCHHHHHHHHHHHHhCCCCC-CEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCC
Confidence            35555555553321  11 11223445677788887764322 4599999999999998843  2344467888888888


Q ss_pred             hHHHHHHHHHcC----------CcEEEEeCCCCCC--C----C-------hHHHHHHHhccCCCCceEEEEEecCCCccc
Q 015729           96 SLLWIDQQQRLN----------FNVDVVESDWGEG--A----K-------LDVLASKLAADTAHTIKAICIVHNETATGV  152 (401)
Q Consensus        96 ~~~~~~~~~~~g----------~~~~~v~~~~~~~--~----d-------~~~le~~~~~~~~~~~~~i~~~~~~n~tG~  152 (401)
                      +.....+.....          ..+..++.+...+  +    |       ++.+++.++....+++.+|++.......|.
T Consensus       150 G~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~  229 (451)
T PRK06062        150 GGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGI  229 (451)
T ss_pred             CCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCc
Confidence            876333222100          0112222221111  1    2       567888886432256889999998888899


Q ss_pred             ccc----hHHHHHHhhhcCCCcEEEEecccccCcc---e--eccCcccceEEEecCCCcccCCC-cceEEEecHHHHHHh
Q 015729          153 TNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLPT-GMGIVCASPKALEAS  222 (401)
Q Consensus       153 ~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~--~~~~~~~~di~~~s~~K~l~g~~-g~G~l~~~~~~~~~~  222 (401)
                      +.+    ++++.++|++  +|+++|+|+++.....   .  ++.....+|+++++  |.++++. ++|.++.++++.+.+
T Consensus       230 ~~p~~~yl~~lr~lc~~--~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t~g--K~lggG~~Pigav~~~~~i~~~~  305 (451)
T PRK06062        230 LVPPPGYLAGVRELCDR--HGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLITFA--KGVNSGYVPLGGVAISEAIAATF  305 (451)
T ss_pred             ccCCHHHHHHHHHHHHH--cCCEEEeeccccCCCcCcHHHHHHhcCCCCCeeeec--hhhhcCCcCcEEEEEcHHHHHHh
Confidence            887    8999999999  9999999999874321   1  12223357877765  9997763 689999999987766


Q ss_pred             ccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH-HHHHHHHHHc--CCccccC
Q 015729          223 KTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLG-KATRLAVEAW--GLKNCTQ  299 (401)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~-~~l~~~L~~~--g~~~~~~  299 (401)
                      ....              +..+.  +++.++..+++..++|+.+.+++   ..++..+.. +++++.|+++  .++....
T Consensus       306 ~~~~--------------~~~~~--T~~gnpl~~Aaa~a~L~~l~~~~---l~~~~~~~G~~~l~~~L~~l~~~~~~v~~  366 (451)
T PRK06062        306 ADRP--------------YPGGL--TYSGHPLACAAAVATINAMEEEG---IVENAARIGAEVLGPGLRELAERHPSVGE  366 (451)
T ss_pred             ccCC--------------CCCCC--CCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhcCCcEEe
Confidence            4210              01121  33455777888999999887764   666666666 4777777765  2333211


Q ss_pred             CCccCCceeEEEEcCCC------C--------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHH
Q 015729          300 KEEWFSDTVTAVIVPSH------I--------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAG  365 (401)
Q Consensus       300 ~~~~~~~~~~~~~~~~~------~--------~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~  365 (401)
                        -...+.++.+++...      .        ....+.+.|+++ ||.+.+     .++.+|+++...+|++|+|+++++
T Consensus       367 --vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gvl~~~-----~~~~lrl~ppl~~t~~eid~~~~~  438 (451)
T PRK06062        367 --VRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKER-GLLPFV-----NGNRIHVVPPCTVTEDEVREGLAI  438 (451)
T ss_pred             --EeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHC-CcEEee-----cCCEEEEECCccCCHHHHHHHHHH
Confidence              113455666666211      0        134677778766 988753     246899988888999999999999


Q ss_pred             HHHHHHhc
Q 015729          366 VEMILKDV  373 (401)
Q Consensus       366 i~~~l~~~  373 (401)
                      ++++++++
T Consensus       439 l~~~l~~~  446 (451)
T PRK06062        439 LDAALAVA  446 (451)
T ss_pred             HHHHHHHh
Confidence            99999765

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.86  E-value=1.2e-18  Score=167.13  Aligned_cols=303  Identities=17%  Similarity=0.165  Sum_probs=194.9

Q ss_pred             HHHHHHHHHHHHHhcCC--CCceEEe-cCChhHHHHHHHhc--cCCCCCeEEEEcCCcchHHHHHHHHH--------cCC
Q 015729           42 ALTKTLLEDIKKIFKTT--SGTPFLI-PTTGTGAWESALTN--TLSPGDRIISFLIGQFSLLWIDQQQR--------LNF  108 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~--~~~~i~~-~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~--------~g~  108 (401)
                      +...++.+++.+.+..+  ....+.| ++||++|++.++..  ......+|+....+||+.....+...        .+.
T Consensus        82 ~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~  161 (425)
T PRK09264         82 TAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGV  161 (425)
T ss_pred             HHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCC
Confidence            44557777777765322  1223656 58999999998843  23444678888888888763322221        111


Q ss_pred             ---cEEEEeCCCCC---CCChHHHHHHHhccC--CCCceEEEEEecCCCccccc----chHHHHHHhhhcCCCcEEEEec
Q 015729          109 ---NVDVVESDWGE---GAKLDVLASKLAADT--AHTIKAICIVHNETATGVTN----NLSKVRKLLDEYRHPALFLVDG  176 (401)
Q Consensus       109 ---~~~~v~~~~~~---~~d~~~le~~~~~~~--~~~~~~i~~~~~~n~tG~~~----~l~~i~~l~~~~~~~~~li~D~  176 (401)
                         .+..++.+...   .-|++++++.+++..  .+++.+|++....+..|...    .+++|.++|++  ||+++|+|+
T Consensus       162 ~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~--~g~llI~DE  239 (425)
T PRK09264        162 PLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRK--HDILLIVDD  239 (425)
T ss_pred             CCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHH--cCcEEEEec
Confidence               23445443210   026778888886421  13578999998888888765    38899999999  999999999


Q ss_pred             ccccCc-----ceeccCcccceEEEecCCCcccC-CCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCC
Q 015729          177 VSSICA-----IDFRMDEWGIDVALTGSQKALSL-PTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT  250 (401)
Q Consensus       177 a~~~~~-----~~~~~~~~~~di~~~s~~K~l~g-~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  250 (401)
                      +|+...     ..++.....+|+++++  |.+++ +.++|++++++++ ..+....                .+.  .++
T Consensus       240 V~tG~GrtG~~~~~~~~~v~PDi~t~~--K~l~~~G~pigav~~~~~i-~~~~~~~----------------~~~--T~~  298 (425)
T PRK09264        240 IQAGCGRTGTFFSFERAGITPDIVTLS--KSISGYGLPMALVLIKPEL-DVWKPGE----------------HNG--TFR  298 (425)
T ss_pred             hhhCCccccHHHHHhhcCCCCCEEEec--cccCCCccceEEEEEchhh-hccCCCc----------------cCC--CCC
Confidence            986321     1122223457887775  99965 5567999998875 3322110                011  223


Q ss_pred             CcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHh
Q 015729          251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQ  328 (401)
Q Consensus       251 ~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  328 (401)
                      .++..+++..++++.+...  .+..++.+++.+++++.|+++  ...... ......+.++++.+++......+.+.+.+
T Consensus       299 gnp~~~aaa~a~l~~~~~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~~~-~~vrg~Gl~~~i~l~~~~~~~~l~~~~~~  375 (425)
T PRK09264        299 GNNLAFVTATAALEEYWSD--DAFEKEVKAKGELVRERLEEIAAKYPGLG-AEVRGRGMMQGIDFGDGELAGKIAAEAFE  375 (425)
T ss_pred             CCHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHhCCCce-ecceecccEEEEEecChHHHHHHHHHHHH
Confidence            4455556666777433322  357777888888888888775  233111 11123456778888543345678888887


Q ss_pred             hCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          329 RYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       329 ~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      + ||.+.+...  .+..+|+++...+|++|+++++++++++++++
T Consensus       376 ~-Gv~~~~~~~--~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~~  417 (425)
T PRK09264        376 N-GLIIETSGP--EDEVVKLLPPLTIDEEELEEGLDILEEAVAEV  417 (425)
T ss_pred             C-CCEEeccCC--CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            7 998865422  14689998888899999999999999998765

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.86  E-value=2.4e-19  Score=169.99  Aligned_cols=307  Identities=14%  Similarity=0.081  Sum_probs=196.6

Q ss_pred             hHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--CCCCCeEEEEcCCcchHH
Q 015729           21 PDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFSLL   98 (401)
Q Consensus        21 ~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~~~gd~vl~~~~~~~~~~   98 (401)
                      .|++++++.+......... .....++++.+++.+.......+++++||++|++.++...  ..++++|++.+.++|+..
T Consensus        46 ~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~  124 (375)
T PRK04260         46 HPQVQQALQKQAGLIWHSP-NLYLNSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRT  124 (375)
T ss_pred             CHHHHHHHHHHHHhcCccc-CccCCHHHHHHHHHHhcCcCCEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCccc
Confidence            4567766666443211110 1123456677777664443334688999999999887543  345678999888888755


Q ss_pred             HHHHHHHcCC---------cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHhhh
Q 015729           99 WIDQQQRLNF---------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDE  165 (401)
Q Consensus        99 ~~~~~~~~g~---------~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~  165 (401)
                      +.... ..+.         .+..++..  ...|++.+++.+.    ++++++++..+++++|...+    ++++.++|++
T Consensus       125 ~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~dl~~l~~~l~----~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~  197 (375)
T PRK04260        125 FGSMS-ATGQDKIKDGFGDGVPHFSYA--IFNDLNSVKALVN----KNTAAVMLELVQGESGVLPADKDFVKALADYCQE  197 (375)
T ss_pred             HHHHh-ccCCcccCCCCCCCCCCeEEe--CCCCHHHHHHhcC----CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHH
Confidence            32221 1111         11111110  0137899998885    35689999999999998865    7999999999


Q ss_pred             cCCCcEEEEecccccCcc---eec--cCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHH
Q 015729          166 YRHPALFLVDGVSSICAI---DFR--MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF  240 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~~---~~~--~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
                        +|+++|+|++|.....   .+.  .....+|++  +.+|.++++..+|+++.++++.+.+.....             
T Consensus       198 --~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~-------------  260 (375)
T PRK04260        198 --TGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIF--TLAKGLANGVPVGAMLAKSSLGGAFGYGSH-------------  260 (375)
T ss_pred             --cCCEEEEechhhCCCcccchhhhHhhCCCCCEE--EecccccCCcceEEEEEcHHHHhhcCCCCC-------------
Confidence              9999999999863211   111  122346766  456999755568999999988766643211             


Q ss_pred             hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcCCCCC
Q 015729          241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSHIN  318 (401)
Q Consensus       241 ~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~  318 (401)
                           ...++.++..++++.++++.+...   +..++.++..+.+++.|.+.  .......-.  ..+.+++++++.  +
T Consensus       261 -----~~t~~~~~~~~~aa~a~l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~g~~~~~~~~~--~  328 (375)
T PRK04260        261 -----GSTFGGNKLSMAAASATLDIMLTA---GFLEQALENGNYLQEQLQKALQDKETVTTVR--GLGYMIGIETTA--D  328 (375)
T ss_pred             -----CCCCCcCHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHhhCCCeeEEe--ccceEEEEEecC--c
Confidence                 112334566667777777776543   34555666666666666553  221111111  245678787732  5


Q ss_pred             HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          319 SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      ..++.+.|.++ ||.+.+.    ....+|+++...++++|+++++++|+++
T Consensus       329 ~~~~~~~l~~~-Gi~v~~~----~~~~lR~~~~~~~t~~~i~~~l~~l~~~  374 (375)
T PRK04260        329 LSQLVEAARDK-GLIVLTA----GTNVIRLLPPLTLTKEEIEQGIAILSEV  374 (375)
T ss_pred             HHHHHHHHHhC-CCEEecC----CCCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence            67899999876 9988654    2367999998889999999999999875

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.86  E-value=9.6e-19  Score=166.96  Aligned_cols=324  Identities=15%  Similarity=0.080  Sum_probs=211.0

Q ss_pred             CChHHHHHHHccCcCC--CC--CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cC-----CCCCeE
Q 015729           19 HIPDQVIRAMNRNNED--YR--SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TL-----SPGDRI   87 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~-----~~gd~v   87 (401)
                      .-+|++.+++.++...  +.  .....+...++.++|++..+.+. +.+.++++|++|++.++.-  ..     .+..+|
T Consensus        59 h~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~-~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~ki  137 (428)
T PRK07986         59 YNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQPL-ECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRF  137 (428)
T ss_pred             CCCHHHHHHHHHHHhhcCCccccccCCHHHHHHHHHHHhhCCCCc-CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence            3346666666654332  11  11123455677788887765322 3599999999999998843  12     234689


Q ss_pred             EEEcCCcchHHHHHHHHHcC------------CcEEEEeCCCCC------CCChHHHHHHHhccCCCCceEEEEEec-CC
Q 015729           88 ISFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGE------GAKLDVLASKLAADTAHTIKAICIVHN-ET  148 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~------~~d~~~le~~~~~~~~~~~~~i~~~~~-~n  148 (401)
                      +....+||+.....+....+            -.+..++.....      .-|++++++.++... +++.+|++... +.
T Consensus       138 i~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~-~~iaavi~Epi~~g  216 (428)
T PRK07986        138 LTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHR-HEIAAVILEPIVQG  216 (428)
T ss_pred             EEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCC-CcEEEEEEechhcC
Confidence            99999988865322211000            012233322110      115678888886543 46778888874 66


Q ss_pred             Ccccccc----hHHHHHHhhhcCCCcEEEEecccccCcc---e--eccCcccceEEEecCCCcccCC-CcceEEEecHHH
Q 015729          149 ATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKA  218 (401)
Q Consensus       149 ~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~--~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~  218 (401)
                      ..|...+    +++|.++|++  +|+++|+||+|.....   .  ++.....+|++++  .|.++|+ .++|.+++++++
T Consensus       217 ~gg~~~~~~~~L~~l~~lc~~--~g~lLI~DEv~tG~GrtG~~fa~~~~gv~PDi~t~--gK~l~gG~~p~~av~~~~~i  292 (428)
T PRK07986        217 AGGMRIYHPEWLKRVRKLCDR--EGILLIADEIATGFGRTGKLFACEHAGIAPDILCL--GKALTGGTMTLSATLTTREV  292 (428)
T ss_pred             cCCcccCCHHHHHHHHHHHHH--cCCEEEEeccccCCccCCCeeeecccCCCCCEEEe--chhhhCCcccCcchhchHHH
Confidence            6676542    7899999999  9999999999853211   1  1222334788875  5999776 478888999998


Q ss_pred             HHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccc
Q 015729          219 LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNC  297 (401)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~  297 (401)
                      .+.+.......           +..++  +++.++..+++..++++.+.+++   ..++..++.+++++.|+++ ..+..
T Consensus       293 ~~~~~~~~~~~-----------~~~~~--T~~g~p~~~aaa~a~L~~i~~~~---~~~~~~~~g~~l~~~l~~l~~~~~i  356 (428)
T PRK07986        293 AETISNGEAGC-----------FMHGP--TFMGNPLACAVANASLSLLESGD---WQQQVAAIEAQLREELAPLRDAPMV  356 (428)
T ss_pred             HHHhhcCCCCc-----------cccCC--CCCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHhcCCCE
Confidence            87775321000           00122  33456778888999999887764   5788888889999999886 43332


Q ss_pred             cCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .  +....+.+..+++.+..+...+.+.|.++ ||.+.+.     ++.+|+.+...+|++|++++++++++++++
T Consensus       357 ~--~vRg~Gl~~~ve~~~~~~~~~~~~~l~~~-Gl~~~~~-----g~~i~~~Ppl~it~~ei~~~~~~l~~~l~~  423 (428)
T PRK07986        357 A--DVRVLGAIGVVETTRPVNMAALQRFFVEQ-GVWIRPF-----GKLIYLMPPYIILPEQLQRLTAAVNRAVQD  423 (428)
T ss_pred             E--eEeccceEEEEEeCCcccHHHHHHHHHHC-CcEEEec-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            2  12234567777774434466888888876 9988643     468999888889999999999999999864

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.86  E-value=1.2e-18  Score=167.62  Aligned_cols=304  Identities=18%  Similarity=0.114  Sum_probs=202.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--------CCCCCeEEEEcCCcchHHHHHHHHHc------
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--------LSPGDRIISFLIGQFSLLWIDQQQRL------  106 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~~~~~~------  106 (401)
                      .+...++.++|.+..+... ..+.|+++|++|++.++...        .....+|+....+||+.....+....      
T Consensus        96 ~~~~~~lAe~L~~~~p~~~-~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~  174 (453)
T PRK06943         96 HEPAIELAERLAALTGGTL-GHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKD  174 (453)
T ss_pred             CHHHHHHHHHHHHhCCCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhc
Confidence            3455678888888765432 35999999999999988432        11236799999999887532221110      


Q ss_pred             --C---CcEEEEeCCCCCC------------CChHHHHHHHhccCCCCceEEEEEe-cCCCcccccc----hHHHHHHhh
Q 015729          107 --N---FNVDVVESDWGEG------------AKLDVLASKLAADTAHTIKAICIVH-NETATGVTNN----LSKVRKLLD  164 (401)
Q Consensus       107 --g---~~~~~v~~~~~~~------------~d~~~le~~~~~~~~~~~~~i~~~~-~~n~tG~~~~----l~~i~~l~~  164 (401)
                        +   ..+..++.+....            -+++++++.++... +++.+|++.. ++...|...+    ++++.++|+
T Consensus       175 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~  253 (453)
T PRK06943        175 AYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERA-GKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCD  253 (453)
T ss_pred             ccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCC-CceEEEEEeccccccCCcccCCHHHHHHHHHHHH
Confidence              0   0123333322110            02467788886544 5789999998 4777888764    788999999


Q ss_pred             hcCCCcEEEEecccccCcc---ee--ccCcccceEEEecCCCcccCC-CcceEEEecHHHHHHhccCCCCccccchHHHH
Q 015729          165 EYRHPALFLVDGVSSICAI---DF--RMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYI  238 (401)
Q Consensus       165 ~~~~~~~li~D~a~~~~~~---~~--~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (401)
                      +  +|+++|.||++.....   .+  +.....+|+++++  |.++++ .++|.+++++++.+.+........        
T Consensus       254 ~--~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt~g--Kgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~--------  321 (453)
T PRK06943        254 R--YGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLCLS--KGISGGYLPLSLVLSRDAIFAAFYDDDVTRG--------  321 (453)
T ss_pred             H--cCCEEEeechhhCCCCCcchhHHHhCCCCCCeEeee--hhhccCcccceEEEEcHHHHHhhcccCccCC--------
Confidence            9  9999999999763311   11  2223348999886  999877 478999999998876653110000        


Q ss_pred             HHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCC
Q 015729          239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHI  317 (401)
Q Consensus       239 ~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~  317 (401)
                        +..++  +++.++..+++..++++.+.+++   ..++..+..+++.+.|+++ ....+.  .....+.++.+++....
T Consensus       322 --~~~~~--T~~gnpl~~aaa~a~L~~i~~~~---l~~~~~~~G~~l~~~L~~l~~~~~v~--~vrG~Gl~~gvel~~~~  392 (453)
T PRK06943        322 --FLHSH--SYTGNPLACRAALATLDLFAEDD---VLARNARKSARLRAALAPLAAHPQVR--HLRQRGTIFAFDVALDG  392 (453)
T ss_pred             --ccCCC--CCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHhcCCCEE--eEeccccEEEEEEccCC
Confidence              01121  33456777888999999988754   6677788888888888876 322222  22245667777773211


Q ss_pred             C-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          318 N-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       318 ~-----~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +     ...+.+.+.++ ||.+.+.     ++.+||++...+|++|+|+++++++++++++
T Consensus       393 ~~~~~~~~~i~~~~~~~-Gll~~~~-----g~~l~~~Ppl~it~~eid~~~~~l~~al~~~  447 (453)
T PRK06943        393 DAARTFSRRFFEAALER-ELLLRPI-----GTTVYLMPPYVLDDDEIAWLAERTRATLDAT  447 (453)
T ss_pred             CcchHHHHHHHHHHHHC-CcEEEec-----CCEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence            1     34577777766 9887642     3579999888899999999999999999764

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.85  E-value=5.6e-19  Score=167.56  Aligned_cols=311  Identities=14%  Similarity=0.102  Sum_probs=198.3

Q ss_pred             hHHHHHHHccCcCCC---CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC------CCC-CeEEEE
Q 015729           21 PDQVIRAMNRNNEDY---RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL------SPG-DRIISF   90 (401)
Q Consensus        21 ~~~v~~a~~~~~~~~---~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~------~~g-d~vl~~   90 (401)
                      +|++.+++.+.....   ......+...++.+.+.+..+   .+.+++++||++|++.++....      +++ ++|+..
T Consensus        54 ~p~v~~a~~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~---~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~  130 (395)
T PRK03715         54 NPGMVEALAAQAEKLINPSPAFYNEPMAKLAGLLTQHSC---FDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITF  130 (395)
T ss_pred             CHHHHHHHHHHHHhcccccccccCHHHHHHHHHHhhccC---CCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEE
Confidence            466666666543221   111122333444444444322   2359999999999999885432      123 578888


Q ss_pred             cCCcchHHHHHHHHHcCCcE---EEEeCCCCC----CCChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHH
Q 015729           91 LIGQFSLLWIDQQQRLNFNV---DVVESDWGE----GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKV  159 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~---~~v~~~~~~----~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i  159 (401)
                      +.+||+.....+. ..+...   ...+...+.    ..|++++++.+.    +++++|++..+++..|.+.+    +++|
T Consensus       131 ~~~yHG~t~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~aavi~Epv~~~gG~~~~~~~~l~~l  205 (395)
T PRK03715        131 DHSFHGRTLATMS-ASGKPGWDTIFAPQVPGFPKAELNDIASVEKLIT----DKTVAVMLEPVQGEGGVIPATREFMQQL  205 (395)
T ss_pred             CCCcCCChHHHHh-hcCCcccccCCCCCCCCceeeCCchHHHHHHHcC----CCceEEEEeCCcCCCCCccCCHHHHHHH
Confidence            8888887643322 222211   011111110    137889998886    35789999999999998876    8999


Q ss_pred             HHHhhhcCCCcEEEEecccccCcc-----eeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccch
Q 015729          160 RKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW  234 (401)
Q Consensus       160 ~~l~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~  234 (401)
                      .++|++  +|+++|+|++|+....     ..+.....+|+++++  |.++++.++|.+++++++.. +...     .   
T Consensus       206 ~~l~~~--~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~g--K~lg~G~p~~av~~~~~i~~-~~~~-----~---  272 (395)
T PRK03715        206 RALTKQ--HGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLG--KGIGGGVPLAALLAKAEVAV-FEAG-----D---  272 (395)
T ss_pred             HHHHHH--cCCEEEEeccccCCCCCcchhhHhhcCCCCceeeeh--hhhhCCcceEEEEEcccccc-ccCC-----C---
Confidence            999999  9999999999873211     112222347887765  99987666888888888642 1110     0   


Q ss_pred             HHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEE
Q 015729          235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVI  312 (401)
Q Consensus       235 ~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~  312 (401)
                              .++  +++.++..+++..++++.+.++   +..++.+++.+++++.|+++  ...+ .  .....+.++.+.
T Consensus       273 --------~~~--T~~g~pl~~aaala~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~i-~--~vrG~Glm~~i~  336 (395)
T PRK03715        273 --------QGG--TYNGNPLMTAVGVAVISQLLAP---GFLEGVRARGEYLKEKLLELSEERGL-E--GERGEGLLRALL  336 (395)
T ss_pred             --------cCC--CCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHhhcCCc-C--eEEcceeEEEEE
Confidence                    011  2245567788889999988754   47788888999999998875  2221 1  112345677788


Q ss_pred             cCCCCCHHHHHHHHHh--hCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          313 VPSHINSSEIVRRAWQ--RYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       313 ~~~~~~~~~l~~~L~~--~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +.+. ....+.+.+.+  +.||.+...    .+..+||.+...+|++|+|+++++|+++++++
T Consensus       337 l~~~-~~~~~~~~~~~~~~~Gi~~~~~----~~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~~  394 (395)
T PRK03715        337 LGKD-IGPQIVEKARDMQPDGLLLNAP----RPNLLRFMPALNVTTEEIDQMIAMLRSVLDKL  394 (395)
T ss_pred             ecCc-hHHHHHHHHHhccCCCEEEeec----CCCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence            7432 23344444432  128887533    24689999999999999999999999998764

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.85  E-value=1.7e-18  Score=166.35  Aligned_cols=305  Identities=19%  Similarity=0.177  Sum_probs=200.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cC----C--CCCeEEEEcCCcchHHHHHHHHH--------
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TL----S--PGDRIISFLIGQFSLLWIDQQQR--------  105 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~----~--~gd~vl~~~~~~~~~~~~~~~~~--------  105 (401)
                      +...++.++|.+.+.... +.+.|+++|++|++.++..  ..    .  ...+|+....+||+.....+...        
T Consensus        92 ~~~~~la~~L~~~~p~~~-~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~  170 (445)
T PRK09221         92 PLAFELAERLAELAPGGL-DHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKM  170 (445)
T ss_pred             HHHHHHHHHHHHhCCCCC-CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhc
Confidence            445578888888764322 3599999999999998843  11    1  13578999999988753222110        


Q ss_pred             cC---CcEEEEeCCC-CC--CC----------ChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHhhh
Q 015729          106 LN---FNVDVVESDW-GE--GA----------KLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDE  165 (401)
Q Consensus       106 ~g---~~~~~v~~~~-~~--~~----------d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~  165 (401)
                      .+   ..+..++.+. ..  .+          ..+++++.++....+++.+|++....+..|.+.+    ++++.++|++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~  250 (445)
T PRK09221        171 FGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDK  250 (445)
T ss_pred             cCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHH
Confidence            01   1123333321 00  00          1357777776432246889999999999999988    8999999999


Q ss_pred             cCCCcEEEEecccc-cCc--cee--ccCcccceEEEecCCCcccCC-CcceEEEecHHHHHHhccCCCCccccchHHHHH
Q 015729          166 YRHPALFLVDGVSS-ICA--IDF--RMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYIK  239 (401)
Q Consensus       166 ~~~~~~li~D~a~~-~~~--~~~--~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (401)
                        +|+++|+|++++ +|-  ..+  +.....+|+++++  |.++++ .++|.+++++++.+.+......  .       .
T Consensus       251 --~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~~g--K~l~gG~~Pi~av~~~~~i~~~~~~~~~~--~-------~  317 (445)
T PRK09221        251 --HGILLIFDEVITGFGRLGAAFAAERFGVTPDIITFA--KGLTNGAIPMGAVIASDEIYDAFMQGPEY--A-------I  317 (445)
T ss_pred             --cCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEEec--cccccCcccceeeEEcHHHHHhhccCccc--c-------c
Confidence              999999999985 331  112  2222346888776  888654 4578899999987766431000  0       0


Q ss_pred             HhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCC--C
Q 015729          240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS--H  316 (401)
Q Consensus       240 ~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~--~  316 (401)
                      .+..+  .+++.++..+++..++++.+.+++   ..++..++.+++++.|+++ +...+..  ....+.+..+.+..  .
T Consensus       318 ~~~~~--~T~~~~pl~~aaa~a~L~~i~~~~---l~~~~~~~g~~l~~~l~~l~~~~~v~~--vrg~Gl~~~v~~~~~~~  390 (445)
T PRK09221        318 EFFHG--YTYSAHPVACAAGLATLDIYREED---LFERAAELAPYFEDAVHSLKGLPHVID--IRNIGLVAGIELAPRPG  390 (445)
T ss_pred             ccccc--cCCCcCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhhccCCCEEE--EecCceEEEEEEecccc
Confidence            01112  133456667778888999887754   6788899999999999886 4433221  11234455555521  1


Q ss_pred             ---CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          317 ---INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       317 ---~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                         ....++.+.|+++ ||.+.++     ++.+||++...+|++|+|+++++++++++++
T Consensus       391 ~~~~~~~~~~~~~~~~-Gv~~~~~-----~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  444 (445)
T PRK09221        391 APGARGYEAFMKCFEK-GLLVRYT-----GDTIALSPPLIIEKAQIDELVDALGDALRAV  444 (445)
T ss_pred             cccchHHHHHHHHHHC-CeEEeec-----CCEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence               1235678888776 9988642     4689999888999999999999999999764

>PRK06105 aminotransferase; Provisional

Probab=99.85  E-value=8e-19  Score=169.37  Aligned_cols=306  Identities=14%  Similarity=0.054  Sum_probs=201.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC--------CCCCeEEEEcCCcchHHHHHHHH--------
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--------SPGDRIISFLIGQFSLLWIDQQQ--------  104 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~--------  104 (401)
                      .+...++.++|.+++..+. ..+.|+++|++|++.++....        ....+|+....+||+.......-        
T Consensus        91 ~~~~~~lae~L~~~~p~~~-~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~  169 (460)
T PRK06105         91 HGPVIDLAEKLVAMAPVPM-SKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHR  169 (460)
T ss_pred             CHHHHHHHHHHHHhCCCCC-CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCccccc
Confidence            3455678888888875432 358999999999999885421        12357888888888876322110        


Q ss_pred             HcC---CcEEEEeCCCCCCC-------------ChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHhh
Q 015729          105 RLN---FNVDVVESDWGEGA-------------KLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLD  164 (401)
Q Consensus       105 ~~g---~~~~~v~~~~~~~~-------------d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~  164 (401)
                      ..+   ..+..++.+.....             ..+++|+.+.....+++.+|++...+...|...+    ++++.++|+
T Consensus       170 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~  249 (460)
T PRK06105        170 SFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLR  249 (460)
T ss_pred             ccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHH
Confidence            011   01222332211111             1356777775322246899999988888898876    889999999


Q ss_pred             hcCCCcEEEEecccc-cCcc--e--eccCcccceEEEecCCCcccCC-CcceEEEecHHHHHHhccCCCCccccchHHHH
Q 015729          165 EYRHPALFLVDGVSS-ICAI--D--FRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYI  238 (401)
Q Consensus       165 ~~~~~~~li~D~a~~-~~~~--~--~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (401)
                      +  +|+++|+||++. +|-.  .  ++.....+|+++++  |.++++ .++|.++.++++.+.+........        
T Consensus       250 ~--~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~g--K~lggG~~P~~av~~~~~i~~~~~~~~~~~~--------  317 (460)
T PRK06105        250 K--YDILLVADEVICGFGRTGNMFGCETFGIKPDILVMS--KQLSSSYQPLSAVLMNEKVYDPIADESGKIG--------  317 (460)
T ss_pred             H--cCCeEEEeccccCCCcCchhhhHHhcCCCCCeeeee--cccccCcccceEEEEcHHHHHHHhcccccCc--------
Confidence            9  999999999984 4321  1  12223347888776  999766 368999999998776653211000        


Q ss_pred             HHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCC-
Q 015729          239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSH-  316 (401)
Q Consensus       239 ~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-  316 (401)
                       .+  .+..+++.++..+++..++++.+.++   +..++..++.+++++.|+++ ......  .....+.+..+++... 
T Consensus       318 -~~--~h~~T~~gnpl~~aaa~a~L~~i~~~---~l~~~v~~~g~~l~~~L~~l~~~~~v~--~vrG~Gl~~gie~~~~~  389 (460)
T PRK06105        318 -TF--GHGFTASGHPVAAAVALENLAIIEER---DLVGNAAERGARLQARLRALADHPLVG--EVRGVGLIAAVELVADK  389 (460)
T ss_pred             -cc--ccCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhhcCCCeE--EEEecceEEEEEEecCc
Confidence             00  01124456677778888899988875   46778888888898888886 333222  1223456666776211 


Q ss_pred             C-----C-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          317 I-----N-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       317 ~-----~-----~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .     +     +..+...++++ ||.+.+.     ++.+|+++...+|++|+|+++++++++++++
T Consensus       390 ~~~~~~~~~~~~a~~i~~~~~~~-Gvl~~~~-----g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~  450 (460)
T PRK06105        390 ATKTPFEPPGKVGARANAAAHEH-GVISRAM-----GDTLAFCPPLIITAAQVDEMVDRFGRALDDV  450 (460)
T ss_pred             ccCCCCCchhHHHHHHHHHHHHC-CeEEEec-----CCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence            0     0     24577777765 9988642     4689998888899999999999999999765

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.85  E-value=4.3e-20  Score=171.74  Aligned_cols=272  Identities=15%  Similarity=0.180  Sum_probs=189.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC-
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-  118 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-  118 (401)
                      +...+.+.++..|+.||++..  .++++|+|.+|.+++.+++++||+|++.-++|-|..  ..+...|+++++++...+ 
T Consensus        64 p~G~I~eAe~~aA~~fGAd~t--~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~--~alil~ga~Pvyi~p~~~~  139 (417)
T PF01276_consen   64 PEGIIKEAEELAARAFGADKT--FFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVY--NALILSGAIPVYIPPEDNE  139 (417)
T ss_dssp             TBTHHHHHHHHHHHHHTESEE--EEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHH--HHHHHHTEEEEEEEEEE-T
T ss_pred             CccHHHHHHHHHHHhcCCCeE--EEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHH--HHHHHcCCeEEEecCCccc
Confidence            345688999999999999874  678899999999999999999999999999998886  356678999998886421 


Q ss_pred             ----CCCCh-----HHHHHHHhccCCCC-ceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCc----ce
Q 015729          119 ----EGAKL-----DVLASKLAADTAHT-IKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICA----ID  184 (401)
Q Consensus       119 ----~~~d~-----~~le~~~~~~~~~~-~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~----~~  184 (401)
                          +.+++     +.+++++++++..+ ++++++++| |..|.+.|+++|.++|++  ++++|++|+||+.-.    ++
T Consensus       140 ~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~P-TY~Gv~~di~~I~~~~h~--~~~~llvDEAhGah~~F~~lp  216 (417)
T PF01276_consen  140 YGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSP-TYYGVCYDIKEIAEICHK--HGIPLLVDEAHGAHFGFHPLP  216 (417)
T ss_dssp             TS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS--TTSEEE-HHHHHHHHCC--TECEEEEE-TT-TTGGCSGGG
T ss_pred             cCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCC-CCCeEEECHHHHHHHhcc--cCCEEEEEccccccccCCCCc
Confidence                23566     99999999876222 445888876 568999999999999999  999999999987432    22


Q ss_pred             eccCcccce-------EEEecCCCcccCCCcceEEEecHHH-H--HHhccCCCCccccchHHHHHHhhcCCCCCCCCcHH
Q 015729          185 FRMDEWGID-------VALTGSQKALSLPTGMGIVCASPKA-L--EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQ  254 (401)
Q Consensus       185 ~~~~~~~~d-------i~~~s~~K~l~g~~g~G~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  254 (401)
                      .+....|+|       +++.|.||++.+....+++.++.+. +  +++.            .....+.     +.+|+..
T Consensus       217 ~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~------------~~l~~~~-----TTSPSY~  279 (417)
T PF01276_consen  217 RSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVN------------EALSMHQ-----TTSPSYP  279 (417)
T ss_dssp             TTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHH------------HHHHHHS------SS--HH
T ss_pred             cchhhccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHH------------HHHHHHc-----CCChHHH
Confidence            233456788       9999999999988888999988763 1  2221            1111222     3368889


Q ss_pred             HHHHHHHHHHHH-HHhcHHHHHHHHHHHHHHHHHHHHH---c-CCccccCCCc-------------------------cC
Q 015729          255 LLYGLRAALDLI-FEEGLENVIERHRRLGKATRLAVEA---W-GLKNCTQKEE-------------------------WF  304 (401)
Q Consensus       255 ~~~a~~~al~~~-~~~g~~~~~~~~~~~~~~l~~~L~~---~-g~~~~~~~~~-------------------------~~  304 (401)
                      .++++..+.+.+ ...| ++..++..++++.+++.+++   . +++++.++.-                         ..
T Consensus       280 lmASlD~a~~~m~~~~G-~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~whgf~~~~~~~~~l  358 (417)
T PF01276_consen  280 LMASLDVARAQMEEEEG-RELLEEAIELAEEFRKKINRLNDIWGFKVLGPEDVGGEGCWDLDPGENWHGFEGLADDYYML  358 (417)
T ss_dssp             HHHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-SEECTCCGCB--TT-TTT--TT--TTSEEE
T ss_pred             HHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhcCCCceEecCCccccCCccccccCccccchhchhcccCcccc
Confidence            999999999988 5555 67888888999999999854   2 5555543210                         01


Q ss_pred             CceeEEEEcC----------CCCCHHHHHHHHHhhCCeEEccC
Q 015729          305 SDTVTAVIVP----------SHINSSEIVRRAWQRYNLSLGLG  337 (401)
Q Consensus       305 ~~~~~~~~~~----------~~~~~~~l~~~L~~~~~i~v~~g  337 (401)
                      .++-+.+.+|          .|+++..+.++|.++ ||.+...
T Consensus       359 DP~K~ti~~pG~~~~g~~~~~Gi~g~~~~~~L~~~-~I~~Ek~  400 (417)
T PF01276_consen  359 DPTKLTINTPGIDADGELSELGIPGYIVEKYLREH-GIQVEKT  400 (417)
T ss_dssp             -TTEEEEE-STBETTSSB-SS---HHHHHHHHHHT-TEE-SEE
T ss_pred             CCcEEEEEccCcCcCCcccccCCCHHHHHHHHHHc-CCEEEec
Confidence            2334445542          357888999999877 9987644

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.85  E-value=2.4e-18  Score=160.60  Aligned_cols=303  Identities=15%  Similarity=0.142  Sum_probs=199.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCC----
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD----  116 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~----  116 (401)
                      ...+.++++.+++++|.+.   ++++++||.|++++....++|||.|  +.+.|+.... ...+..|+..+.++.+    
T Consensus        70 ~~s~~~lE~~va~~~G~~~---av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~-ahIe~~Gav~vDi~~dea~~  143 (450)
T TIGR02618        70 SRNFYHLERTVRELYGFKY---VVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTR-YHQEKNGATFVDIIIDEAHD  143 (450)
T ss_pred             CCcHHHHHHHHHHHHCCCe---EEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHH-HHHHhCCeEEEeeecccccc
Confidence            4457799999999999987   8999999999888766678999977  5565655442 2246678766666433    


Q ss_pred             ------CCCCCChHHHHHHHhccCCCCceEEEEEecCCCc-cccc---chHHHHHHhhhcCCCcEEEEecccccCccee-
Q 015729          117 ------WGEGAKLDVLASKLAADTAHTIKAICIVHNETAT-GVTN---NLSKVRKLLDEYRHPALFLVDGVSSICAIDF-  185 (401)
Q Consensus       117 ------~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~t-G~~~---~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~-  185 (401)
                            .++.+|++.+++++++....+++.+.++.++|.. |...   ++++|.++|++  +|++||.|+|+.++...+ 
T Consensus       144 ~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~--~Gl~vi~DaAR~~gNA~~I  221 (450)
T TIGR02618       144 AQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEA--HGIKVFYDATRCVENAYFI  221 (450)
T ss_pred             cccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHH--cCCEEEEEccchhhChhhh
Confidence                  3478899999999986432355677777777765 7885   47899999999  999999999998754221 


Q ss_pred             ----------ccC------cccceEEEecCCCcccCCCcceEEE-ecHHHHHHhccCCCCccccchHHHHHHhhcCCCCC
Q 015729          186 ----------RMD------EWGIDVALTGSQKALSLPTGMGIVC-ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP  248 (401)
Q Consensus       186 ----------~~~------~~~~di~~~s~~K~l~g~~g~G~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  248 (401)
                                ++.      --.+|..++|++|..+++.| |+++ .++++.++++.....            + -|.-..
T Consensus       222 ~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~G-G~l~~~d~~l~~k~r~~~~~------------~-eG~~ty  287 (450)
T TIGR02618       222 KEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIG-GFLCMNDDEMFQSAKELVVV------------F-EGMPSY  287 (450)
T ss_pred             hcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCc-eEEEeCCHHHHHHHHHHhhh------------c-CCcccc
Confidence                      110      11579999999999977777 7777 566776666543211            1 111001


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEc----C----CCCCHH
Q 015729          249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV----P----SHINSS  320 (401)
Q Consensus       249 ~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~----~----~~~~~~  320 (401)
                      +......+.++..+++...+   .....+..+..++|.+.|.+.|+++..+.    .+..+.+..    |    +..++.
T Consensus       288 Ggla~r~~~ala~gL~e~~~---~~y~~~r~~~a~~La~~L~~~Gvpv~~p~----ggh~V~vda~~~lph~~~~~~p~~  360 (450)
T TIGR02618       288 GGLAGRDMEAMAIGIREAVD---YEYIEHRVKQVRYLGDKLKAAGVPIVEPV----GGHAVFLDARRFLPHIPQDQFPAQ  360 (450)
T ss_pred             CchhhhhHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHCCCcccCCC----CcceEEEEhHHhCCCCChhhChHH
Confidence            11112122233333332221   13444555678999999999999886542    223444543    2    235678


Q ss_pred             HHHHHHHhhCCeEEc------cCCCCCCC-------cEEEEeecc-cCCHHHHHHHHHHHHHHHHh
Q 015729          321 EIVRRAWQRYNLSLG------LGLNKVAG-------KVFRIGHLG-HLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       321 ~l~~~L~~~~~i~v~------~g~~~~~~-------~~~Ri~~~~-~~~~~di~~~~~~i~~~l~~  372 (401)
                      .++..|....||.-.      .|.++..+       ..+|+.+.- ..|.+.+|...+++.++.+.
T Consensus       361 al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~  426 (450)
T TIGR02618       361 SLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKH  426 (450)
T ss_pred             HHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence            888888876677622      22222111       348986544 66889999999999988754

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK05965 hypothetical protein; Provisional

Probab=99.85  E-value=3e-18  Score=165.38  Aligned_cols=335  Identities=16%  Similarity=0.110  Sum_probs=216.7

Q ss_pred             hHHHHHHHccCcCC--CCC---ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cC----C-C-CCeE
Q 015729           21 PDQVIRAMNRNNED--YRS---PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TL----S-P-GDRI   87 (401)
Q Consensus        21 ~~~v~~a~~~~~~~--~~~---~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~----~-~-gd~v   87 (401)
                      +|++.+++.++...  +..   ....+...++-++|.+....+. +.+.|+++|++|++.++..  ..    . + ..+|
T Consensus        64 ~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~ki  142 (459)
T PRK05965         64 QESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGSL-NHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQF  142 (459)
T ss_pred             CHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCCCc-CEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEE
Confidence            56666666664432  111   1123445578888888764322 3599999999999998843  11    1 2 3578


Q ss_pred             EEEcCCcchHHHHHHHH--------HcCC---cEEEEeCCCCCC----CC--------hHHHHHHHhccCCCCceEEEEE
Q 015729           88 ISFLIGQFSLLWIDQQQ--------RLNF---NVDVVESDWGEG----AK--------LDVLASKLAADTAHTIKAICIV  144 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~--------~~g~---~~~~v~~~~~~~----~d--------~~~le~~~~~~~~~~~~~i~~~  144 (401)
                      +....+||+.....+.-        ..+.   .+..++.+...+    -|        ++++++.+++...+++.+|++.
T Consensus       143 i~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvE  222 (459)
T PRK05965        143 ISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCE  222 (459)
T ss_pred             EEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEe
Confidence            99998888875322111        1111   123333221110    12        2577888865432578999999


Q ss_pred             ecCCCcccccc----hHHHHHHhhhcCCCcEEEEecccccCcc---eeccC--cccceEEEecCCCcccCCC-cceEEEe
Q 015729          145 HNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---DFRMD--EWGIDVALTGSQKALSLPT-GMGIVCA  214 (401)
Q Consensus       145 ~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~~~~~--~~~~di~~~s~~K~l~g~~-g~G~l~~  214 (401)
                      ..+...|.+.+    ++++.++|++  +|+++|.||++.....   .+..+  ...+|+++++  |.++++. ++|.+++
T Consensus       223 Piqg~gG~~~p~~~yl~~lr~lc~~--~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi~av~~  298 (459)
T PRK05965        223 PIQGSGGVIVPPKGWLKAMREACRE--LGILFVADEVITGFGRTGPLFACEAEGVVPDLMTVA--KGLTSGYVPMGAVLM  298 (459)
T ss_pred             ccccCCCCccCCHHHHHHHHHHHHH--cCCEEEEechhccCccCchhhhHhhcCCCCCeEEec--hhhccCCcceeEEEE
Confidence            98888888764    7889999999  9999999999864321   12222  2347888887  9998774 7999999


Q ss_pred             cHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-C
Q 015729          215 SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-G  293 (401)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g  293 (401)
                      ++++.+.+........         .+.-++  +++.++..+++..++++.+++++   ..++..+..+++.+.|+++ .
T Consensus       299 ~~~i~~~~~~~~~~~~---------~~~h~~--T~~gnpl~~Aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~l~~l~~  364 (459)
T PRK05965        299 SDHVYQGIADGAGAAA---------PVGHGY--TYSAHPVSAAVGLEVLRLYHEGG---LLANGQKAGPRFAAGLDALRA  364 (459)
T ss_pred             cHHHHHHHhccccccc---------cccccC--CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhhcc
Confidence            9999877643210000         001122  34566677888899999988764   6777888888999999886 3


Q ss_pred             CccccCCCccCCceeEEEEcCCCC------C-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHH
Q 015729          294 LKNCTQKEEWFSDTVTAVIVPSHI------N-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGC  362 (401)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~------~-----~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~  362 (401)
                      .....  +....+.++.+++.+..      +     ...+.+.++++ ||.+.+.    ..+.+|+.+...+|++|++++
T Consensus       365 ~~~v~--~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~-Gll~~~~----g~~~i~~~PpL~it~~ei~~~  437 (459)
T PRK05965        365 HPLVG--DVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYAN-GLVFRAF----GDGVLGFAPALCCTEGEFDLI  437 (459)
T ss_pred             CCCEE--EEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhC-CeEEEec----CCcEEEEECCCcCCHHHHHHH
Confidence            32222  22245666777763211      1     23566777766 9988632    246799988888999999999


Q ss_pred             HHHHHHHHHhcCCCCCcch
Q 015729          363 LAGVEMILKDVGYPVKLGS  381 (401)
Q Consensus       363 ~~~i~~~l~~~~~~~~~~~  381 (401)
                      +++++++++++...+++..
T Consensus       438 ~~~l~~~l~~~~~~~~~~~  456 (459)
T PRK05965        438 FERTRKTLDDVLADPDVRA  456 (459)
T ss_pred             HHHHHHHHHHHhcCcchhh
Confidence            9999999998755555443

>PRK06541 hypothetical protein; Provisional

Probab=99.85  E-value=1.7e-18  Score=166.94  Aligned_cols=304  Identities=14%  Similarity=0.090  Sum_probs=199.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cC---C---CCCeEEEEcCCcchHHHHHHHHHcC------
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TL---S---PGDRIISFLIGQFSLLWIDQQQRLN------  107 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~---~---~gd~vl~~~~~~~~~~~~~~~~~~g------  107 (401)
                      +...++.++|.++...+. +.+.|+++|++|++.++.-  ..   .   ...+|+....+||+.....+.. .+      
T Consensus        95 ~~~~~la~~l~~~~p~~~-~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~-~~~~~~~~  172 (460)
T PRK06541         95 PPAIELAERLAALAPGDL-NRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAI-TGLPAFKA  172 (460)
T ss_pred             HHHHHHHHHHHHhCCCCc-CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcC-cCChhhcc
Confidence            445677788887764322 4599999999999998842  11   1   2468899988888876322211 11      


Q ss_pred             ------CcEEEEeCCCCCC-----CC--------hHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHhh
Q 015729          108 ------FNVDVVESDWGEG-----AK--------LDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLD  164 (401)
Q Consensus       108 ------~~~~~v~~~~~~~-----~d--------~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~  164 (401)
                            ..+..++.+....     -+        ++.+++.++....+++.+|++...+++.|.+.+    +++|.++|+
T Consensus       173 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~  252 (460)
T PRK06541        173 PFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICD  252 (460)
T ss_pred             ccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHH
Confidence                  1123333221100     11        366787776422246788888888999999987    899999999


Q ss_pred             hcCCCcEEEEeccc-ccCcc--eeccC--cccceEEEecCCCcccCCC-cceEEEecHHHHHHhccCCCCccccchHHHH
Q 015729          165 EYRHPALFLVDGVS-SICAI--DFRMD--EWGIDVALTGSQKALSLPT-GMGIVCASPKALEASKTAKSVRVFFDWKDYI  238 (401)
Q Consensus       165 ~~~~~~~li~D~a~-~~~~~--~~~~~--~~~~di~~~s~~K~l~g~~-g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (401)
                      +  +|+++|+|+++ ++|-.  .+..+  ...+|++++  +|.++++. ++|.+++++++.+.+.... ....       
T Consensus       253 ~--~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt~--gK~l~~G~~pigav~~~~~i~~~~~~~~-~~~~-------  320 (460)
T PRK06541        253 R--YDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITC--AKGITSGYSPLGAMIASDRLFEPFLDGP-TMFL-------  320 (460)
T ss_pred             H--cCCEEEEechhhCCCcCchhhhhhhcCCCCCEEEe--cccccCCccceeEEEEcHHHHHHhhcCC-Cccc-------
Confidence            9  99999999998 44421  11121  234788875  49997654 6899999999877665321 1100       


Q ss_pred             HHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCC-
Q 015729          239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSH-  316 (401)
Q Consensus       239 ~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-  316 (401)
                          .+  .+++.++..+++..++++.+.+++   ..++..++.++|.+.|+++ .+.+...  ....+.++.+++.+. 
T Consensus       321 ----~~--~T~~gnp~~~aaala~l~~l~~~~---~~~~~~~~g~~l~~~L~~l~~~~~v~~--vrg~Gl~~~ie~~~~~  389 (460)
T PRK06541        321 ----HG--YTFGGHPVSAAVALANLDIFEREG---LLDHVRDNEPAFRATLEKLLDLPIVGD--VRGDGYFYGIELVKDK  389 (460)
T ss_pred             ----cC--CCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHhhcCCCeEE--EEecceEEEEEEecCc
Confidence                01  133455667788888888877653   6688889999999999886 4333211  113455666776221 


Q ss_pred             -----CCH--------HHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          317 -----INS--------SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       317 -----~~~--------~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                           .+.        ..+...|+++ ||.+.+..  .....+||++...+|++|+|+++++++++++++
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~--~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~  456 (460)
T PRK06541        390 ATKETFTDDESERLLRGFLSPALFEA-GLYCRADD--RGDPVVQLAPPLISGQEEFDEIEQILRSVLTEA  456 (460)
T ss_pred             ccccCCcchhhhhhHHHHHHHHHHhC-CeEEEecC--CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence                 000        2456677766 99987531  123679999998999999999999999998753

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.85  E-value=3.9e-20  Score=155.23  Aligned_cols=164  Identities=29%  Similarity=0.300  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCCh
Q 015729           44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKL  123 (401)
Q Consensus        44 ~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~  123 (401)
                      +.++++.++++++.+. +.+++++|+|+|+..++.++.+++++|+++.++|++..+ ..++..|++++.++.+.++..+.
T Consensus         2 ~~~~~~~l~~~~~~~~-~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~   79 (170)
T cd01494           2 LEELEEKLARLLQPGN-DKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYW-VAAELAGAKPVPVPVDDAGYGGL   79 (170)
T ss_pred             HHHHHHHHHHHcCCCC-CcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehh-hHHHhcCCEEEEeccCCCCccch
Confidence            4589999999996433 348888999999999999988889999999999888875 56788899999998876543333


Q ss_pred             --HHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCccee---ccCcccceEEEec
Q 015729          124 --DVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF---RMDEWGIDVALTG  198 (401)
Q Consensus       124 --~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~---~~~~~~~di~~~s  198 (401)
                        +.+++....   .+++++++++++|++|...|+++|.++|++  +|+++|+|+++..+....   +....++|+++.|
T Consensus        80 ~~~~~~~~~~~---~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~--~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s  154 (170)
T cd01494          80 DVAILEELKAK---PNVALIVITPNTTSGGVLVPLKEIRKIAKE--YGILLLVDAASAGGASPAPGVLIPEGGADVVTFS  154 (170)
T ss_pred             hhhhhhhcccc---CceEEEEEecCcCCCCeEcCHHHHHHHHHH--cCCEEEEecccccccccccccccccccCCEEEEE
Confidence              244443322   578999999999999999999999999999  999999999999877654   4556689999999


Q ss_pred             CCCcccCCCcceEEEec
Q 015729          199 SQKALSLPTGMGIVCAS  215 (401)
Q Consensus       199 ~~K~l~g~~g~G~l~~~  215 (401)
                      .||++++ +|+|+++++
T Consensus       155 ~~K~~~~-~~~G~l~~~  170 (170)
T cd01494         155 LHKNLGG-EGGGVVIVK  170 (170)
T ss_pred             cccccCC-CceEEEEeC
Confidence            9999976 888999875

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.85  E-value=1.3e-18  Score=165.56  Aligned_cols=314  Identities=19%  Similarity=0.172  Sum_probs=199.8

Q ss_pred             CChHHHHHHHccCcCC--CCC-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cC----C--C-CCe
Q 015729           19 HIPDQVIRAMNRNNED--YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TL----S--P-GDR   86 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~--~~~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~----~--~-gd~   86 (401)
                      .-+|.+.+++.++...  +.. ....+...++.++|.+..+.  .+.+.|+++|++|++.++..  ..    .  + .++
T Consensus        56 h~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~--~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~  133 (408)
T PRK04612         56 HNDPDLVAALTEQAGKLWHTSNVFYSAPPLKLAEELVTASRF--AEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRV  133 (408)
T ss_pred             CCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhCCC--CCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcE
Confidence            3345555555553321  111 11233445777777776532  24699999999999998843  11    1  1 246


Q ss_pred             EEEEcCCcchHHHHHHHHHcCC------------cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccccc
Q 015729           87 IISFLIGQFSLLWIDQQQRLNF------------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN  154 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~  154 (401)
                      |+....+||+.....+.. .+-            .+..++  .   .|++.+++.++.   +++.++++...+...|.+.
T Consensus       134 ii~~~~~yHG~t~~~~s~-~~~~~~~~~~~~~~~~~~~~~--~---~d~~~l~~~~~~---~~~aavi~eP~~~~gg~~~  204 (408)
T PRK04612        134 IVTFRGSFHGRTLAAVTA-TAQPKYQEGYEPLPGGFRYVD--F---NDVEALEAAMAG---GDVAAVMLEPIQGEGGVMP  204 (408)
T ss_pred             EEEECCCcCCccHHHHHh-cCCcccccCCCCCCCCceEcC--C---CCHHHHHHhhCC---CCEEEEEECCccCCCCCcC
Confidence            889888888876432221 111            011111  1   278899988853   3566666665554444444


Q ss_pred             c----hHHHHHHhhhcCCCcEEEEecccccCcc---eeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCC
Q 015729          155 N----LSKVRKLLDEYRHPALFLVDGVSSICAI---DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS  227 (401)
Q Consensus       155 ~----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~  227 (401)
                      +    +++|.++|++  +|+++|+|+++.....   .+.....+++..+.+.+|.++++.++|+++.++++.+.+.....
T Consensus       205 ~~~~~l~~l~~l~~~--~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~~G~piga~~~~~~~~~~~~~~~~  282 (408)
T PRK04612        205 AAPGFLARVRALCDQ--HDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALGGGFPIGAMLAGPKVAETMQFGAH  282 (408)
T ss_pred             CCHHHHHHHHHHHHH--cCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchhcCCCceEEEEECHHHHhhhcCCCc
Confidence            2    7889999999  9999999999863211   11111223333344445999766678999998887666543210


Q ss_pred             CccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCC
Q 015729          228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFS  305 (401)
Q Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~  305 (401)
                                      +  ..++.++..+++..++++.+.++   +..++..++.+++++.|+++  .+.+...  ....
T Consensus       283 ----------------~--~t~~~~p~~~aaa~a~L~~~~~~---~l~~~~~~~g~~l~~~l~~l~~~~~~i~~--vrg~  339 (408)
T PRK04612        283 ----------------G--TTFGGNPLAAAVARVALRKLASP---QIAANVARQSAALRAGLEALNAEFGVFAQ--VRGR  339 (408)
T ss_pred             ----------------C--CCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhhCCCeee--eecc
Confidence                            1  12345677778888888888764   47788888899999999886  3333321  1234


Q ss_pred             ceeEEEEcCCC--CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          306 DTVTAVIVPSH--INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       306 ~~~~~~~~~~~--~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +.++.+.+...  ..+.++.+.|.++ ||.+.+.    ..+.+|+.+...++++|+|+++++++++++++
T Consensus       340 Gl~~~i~~~~~~~~~a~~i~~~l~~~-Gvlv~~~----g~~~lRl~Ppl~it~eeid~~l~~l~~~l~~~  404 (408)
T PRK04612        340 GLMLGAVLAPAHAGQAGAILDLAAEH-GLLLLQA----GPDVLRFVPALNLTDAELADGLARLRLALADY  404 (408)
T ss_pred             ceEEEEEecCchhhHHHHHHHHHHHC-CeEEeeC----CCCEEEEcCCccCCHHHHHHHHHHHHHHHHHH
Confidence            56777776321  1245778888766 9988642    23789999888999999999999999999764

>PRK07482 hypothetical protein; Provisional

Probab=99.85  E-value=1.9e-18  Score=166.78  Aligned_cols=308  Identities=15%  Similarity=0.081  Sum_probs=202.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--C----C--CCCeEEEEcCCcchHHHHHHH--------H
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--L----S--PGDRIISFLIGQFSLLWIDQQ--------Q  104 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~----~--~gd~vl~~~~~~~~~~~~~~~--------~  104 (401)
                      .+...++-++|.+....+. +.+.|+++|++|++.++...  .    .  ...+|+....+||+.......        .
T Consensus        93 ~~~~~~lAe~L~~~~p~~~-~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~  171 (461)
T PRK07482         93 TEASITLSKRIIDRAPAGM-SKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQ  171 (461)
T ss_pred             CHHHHHHHHHHHHhCCCCc-CEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhh
Confidence            3556678888888764322 35899999999999988432  1    1  235788888888886532111        0


Q ss_pred             HcC---CcEEEEeCCCCCC-------------CChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHhh
Q 015729          105 RLN---FNVDVVESDWGEG-------------AKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLD  164 (401)
Q Consensus       105 ~~g---~~~~~v~~~~~~~-------------~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~  164 (401)
                      ..+   -.+..++.+...+             .+++++++.+.....+++.+|++.......|.+.+    +++|.++|+
T Consensus       172 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~  251 (461)
T PRK07482        172 HFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLK  251 (461)
T ss_pred             ccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHH
Confidence            111   1122333221101             03577888875332256899999988888888864    778999999


Q ss_pred             hcCCCcEEEEecccccCcc---e--eccCcccceEEEecCCCcccCCC-cceEEEecHHHHHHhccCCCCccccchHHHH
Q 015729          165 EYRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLPT-GMGIVCASPKALEASKTAKSVRVFFDWKDYI  238 (401)
Q Consensus       165 ~~~~~~~li~D~a~~~~~~---~--~~~~~~~~di~~~s~~K~l~g~~-g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (401)
                      +  +|+++|.||++.....   .  ++.....+|+++++  |.++++. ++|.+++++++.+.+.......         
T Consensus       252 ~--~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~~~~~~~~~~~---------  318 (461)
T PRK07482        252 K--YDILLIADEVVTGFGRLGSMFGSDHYGIEPDLITVA--KGLTSAYAPLSGSIVGEKVWDVLEQGSDEH---------  318 (461)
T ss_pred             H--hCCEEEEeccccCCCcCcchhhHHhcCCCCCEEEEc--cccccCccccceeeecHHHHHHHhcccccC---------
Confidence            9  9999999999764321   1  12223348999886  9997774 7899999999877664321000         


Q ss_pred             HHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcCCC
Q 015729          239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSH  316 (401)
Q Consensus       239 ~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~  316 (401)
                      ..+.-+  .+++.++..+++..++++.+.+++   ..++..+..+++.+.|+++  ......  .....+.++.+++.+.
T Consensus       319 ~~~~h~--~T~~gnpl~~Aaa~a~L~~~~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~v~--~vrG~Glm~giel~~~  391 (461)
T PRK07482        319 GAIGHG--WTYSGHPICAAAALANLDILEREN---LVGNAAEVGAYFRARLRAAFGDHPLVG--EVRGVGMLAAVEFVAD  391 (461)
T ss_pred             CccccC--CCCCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHhcCCCEE--EEeeceeEEEEEeccC
Confidence            001112  244567777889999999888764   6667778888888888764  333322  1223556777777321


Q ss_pred             C------C-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          317 I------N-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       317 ~------~-----~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .      +     ...+...|+++ ||.+.+..   .++.+|+.+...+|++|+|+++++++++++++
T Consensus       392 ~~~~~~~~~~~~~~~~i~~~~~~~-Gvl~~~~~---~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~  455 (461)
T PRK07482        392 RDDRTPFDPALKIGPQVSAAALER-GVIARAMP---HGDILGFAPPLVLTRAEADEIVAIAKDAVDEV  455 (461)
T ss_pred             CCcCCCCChhhHHHHHHHHHHHHC-CcEEecCC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            1      1     24677778776 88875421   25689998888899999999999999999764

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.85  E-value=4.7e-18  Score=163.23  Aligned_cols=328  Identities=19%  Similarity=0.190  Sum_probs=209.0

Q ss_pred             CChHHHHHHHccCcCC--C--CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cC-----CC-CCe
Q 015729           19 HIPDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TL-----SP-GDR   86 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~--~--~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~-----~~-gd~   86 (401)
                      .-+|.+.+++.++...  +  ......+...++.++|.+++.... +.+.++++|++|++.++..  ..     .+ ..+
T Consensus        62 h~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~-~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~  140 (442)
T PRK13360         62 HGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGGL-NHVFFTNSGSESVDTALKIALAYHRARGEGSRTR  140 (442)
T ss_pred             CCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCCC-CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcE
Confidence            4456666666554321  1  111123445578888888764222 3589999999999998843  11     12 357


Q ss_pred             EEEEcCCcchHHHHHHHHH--------cC---CcEEEEeCCCC---CCC----------ChHHHHHHHhccCCCCceEEE
Q 015729           87 IISFLIGQFSLLWIDQQQR--------LN---FNVDVVESDWG---EGA----------KLDVLASKLAADTAHTIKAIC  142 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~--------~g---~~~~~v~~~~~---~~~----------d~~~le~~~~~~~~~~~~~i~  142 (401)
                      |+....+||+.....+.-.        .+   ..+..++....   ..+          .++++++.+.....+++.+|+
T Consensus       141 ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavi  220 (442)
T PRK13360        141 LIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVI  220 (442)
T ss_pred             EEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            9999999998753222110        01   12333443311   001          145788888643224688999


Q ss_pred             EEecCCCcccccc----hHHHHHHhhhcCCCcEEEEecccc-cCcc--ee--ccCcccceEEEecCCCcccCC-CcceEE
Q 015729          143 IVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSS-ICAI--DF--RMDEWGIDVALTGSQKALSLP-TGMGIV  212 (401)
Q Consensus       143 ~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~-~~~~--~~--~~~~~~~di~~~s~~K~l~g~-~g~G~l  212 (401)
                      +.......|.+.+    +++|.++|++  +|+++|+|++|. +|..  .+  +.....+|+++++  |.++++ .++|.+
T Consensus       221 vEpi~g~~G~~~~~~~fl~~lr~lc~~--~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDivt~g--K~l~gG~~P~gav  296 (442)
T PRK13360        221 VEPVAGSTGVLIPPKGYLQRLREICDK--HGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLTCA--KGLTNGAIPMGAV  296 (442)
T ss_pred             EccccCCCCCccCCHHHHHHHHHHHHH--cCCEEEEechhhCCCCCccchhhhhcCCCCceeeee--eccccCccceEEE
Confidence            9999988999988    8999999999  999999999984 4321  11  2223347887665  999755 457889


Q ss_pred             EecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc
Q 015729          213 CASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW  292 (401)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~  292 (401)
                      .+++++.+.+........         .+..+  .+++.++..+++..++++.+.+++   ..++..++.+++++.|+++
T Consensus       297 ~~~~~i~~~~~~~~~~~~---------~~~~~--~T~~g~pl~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~l~~l  362 (442)
T PRK13360        297 FVSSEIHDAFMQGPEAGI---------EFFHG--YTYSGHPLACAAALATLDLYEREG---LLTRAARLAPYWEDALHSL  362 (442)
T ss_pred             EEcHHHHHHhhcCCcccc---------ccccC--CCCCCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHh
Confidence            999998776643210000         00011  234457777889999999887764   6678888888999988876


Q ss_pred             -CCccccCCCccCCceeEEEEcCC--C---CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHH
Q 015729          293 -GLKNCTQKEEWFSDTVTAVIVPS--H---INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGV  366 (401)
Q Consensus       293 -g~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i  366 (401)
                       .......  ....+.+..+.+..  .   ....++...|.++ ||.+...     ++.+||++...+|++|+|++++++
T Consensus       363 ~~~~~v~~--vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~-Gvl~~~~-----~~~lr~~Ppl~~t~~eid~~~~~l  434 (442)
T PRK13360        363 RDAPHVID--IRNLGLVGAVELAPRDGKPGKRAYEVFLKCFEK-GLMIRYT-----GDILALSPPLIIEEAQIDELFDIL  434 (442)
T ss_pred             hcCCCeee--eeccceEEEEEEecCCCCcchhHHHHHHHHHHC-CcEEEec-----CCEEEEeCCCccCHHHHHHHHHHH
Confidence             3332221  11233344444411  1   1235677788776 9988642     467999988899999999999999


Q ss_pred             HHHHHhc
Q 015729          367 EMILKDV  373 (401)
Q Consensus       367 ~~~l~~~  373 (401)
                      +++++++
T Consensus       435 ~~~l~~~  441 (442)
T PRK13360        435 AQALKET  441 (442)
T ss_pred             HHHHHHh
Confidence            9998753

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.85  E-value=3.2e-18  Score=164.42  Aligned_cols=299  Identities=16%  Similarity=0.095  Sum_probs=194.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcchHHHHHHHHHcC-----------
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQFSLLWIDQQQRLN-----------  107 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~~g-----------  107 (401)
                      .+...++.++|.+.......+.+.|+++|++|++.++..  .....++|+....+||+.....+....+           
T Consensus        96 ~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~  175 (441)
T PRK05769         96 YEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPL  175 (441)
T ss_pred             CHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCC
Confidence            345567888888876532224599999999999998843  2334467888888888876333221100           


Q ss_pred             -CcEEEEeCCCCCC-----CC--------hHHHHH-HHhc-cCCCCceEEEEEecCCCcccccc----hHHHHHHhhhcC
Q 015729          108 -FNVDVVESDWGEG-----AK--------LDVLAS-KLAA-DTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYR  167 (401)
Q Consensus       108 -~~~~~v~~~~~~~-----~d--------~~~le~-~~~~-~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~  167 (401)
                       -.+..++.+....     -+        .+.+++ .++. ...+++.+|++....+..|.+.+    ++++.++|++  
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~--  253 (441)
T PRK05769        176 MPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADK--  253 (441)
T ss_pred             CCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHH--
Confidence             1223333321100     01        234565 3332 11246889999988888899888    8999999999  


Q ss_pred             CCcEEEEeccccc-Ccc--eeccCc--ccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhh
Q 015729          168 HPALFLVDGVSSI-CAI--DFRMDE--WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYN  242 (401)
Q Consensus       168 ~~~~li~D~a~~~-~~~--~~~~~~--~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (401)
                      +|+++|+|+++.. |..  .+....  ..+|+++++  |.++++.++|++++++++.......                 
T Consensus       254 ~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~--K~l~~G~p~gav~~~~~i~~~~~~~-----------------  314 (441)
T PRK05769        254 YGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLA--KAIAGGLPLGAVIGRAELMFLPPGS-----------------  314 (441)
T ss_pred             cCCEEEEechhhCCCcccceehhhccCCCCCEEEEc--ccccCCcccEEEEEehhhhhcCCCC-----------------
Confidence            9999999999873 211  112222  246888765  8887666689999998875422100                 


Q ss_pred             cCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcC--CccccCCCccCCceeEEEEcCCCC---
Q 015729          243 LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG--LKNCTQKEEWFSDTVTAVIVPSHI---  317 (401)
Q Consensus       243 ~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~~~~~~~~~~~---  317 (401)
                      .+.  .++.++..+++..++++.+.+    +..++..++.++|++.|+++.  +.+...  ....+.++.+.+.+..   
T Consensus       315 ~~~--T~~g~p~~~aaa~a~L~~l~~----~~~~~~~~~g~~l~~~L~~l~~~~~~~~~--vrg~G~~~~i~~~~~~~~~  386 (441)
T PRK05769        315 HAN--TFGGNPVAAAAALATLEELEE----GLLENAQKLGEYLRKELKELKEKYEFIGD--VRGLGLMIGVELVKDRKEP  386 (441)
T ss_pred             CCC--CCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCeee--eecceEEEEEEeccCCccc
Confidence            011  223456667888888888765    467788888889999888752  443321  1234556767662210   


Q ss_pred             ---CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          318 ---NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       318 ---~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                         ....+.+.|+++ ||.+.+.    ....+||++...+|++|+|+++++++++++++
T Consensus       387 ~~~~~~~~~~~~~~~-Gil~~~~----~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  440 (441)
T PRK05769        387 DPKLRDKVLYEAFKR-GLLLLGA----GKSAIRIIPPLIITEEEADIGLEILEEAIKEL  440 (441)
T ss_pred             cHHHHHHHHHHHHhC-CcEEecC----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence               134567777766 9887532    23679998888899999999999999998753

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.85  E-value=2e-18  Score=159.39  Aligned_cols=291  Identities=15%  Similarity=0.097  Sum_probs=198.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCC
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE  119 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  119 (401)
                      .....+++.++.+-|.+.   .+.+++|..|+..++.+++++||+|+++...|.+.+  +....+..|+++..++..   
T Consensus        63 PT~~~lE~~~a~LEg~~~---~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~---  136 (396)
T COG0626          63 PTRDALEEALAELEGGED---AFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPG---  136 (396)
T ss_pred             ccHHHHHHHHHHhhCCCc---EEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCC---
Confidence            446689999999887766   678899999999999999999999999999777665  556677789988888744   


Q ss_pred             CCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecC
Q 015729          120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS  199 (401)
Q Consensus       120 ~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~  199 (401)
                        +.+++++++.+   +++++|++..|.||+..+.|+++|.++|++  +|+++++|.+.+.+.. .+.-..|+||++.|.
T Consensus       137 --~~~~~~~~~~~---~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~--~g~~vvVDNTfatP~~-q~PL~~GaDIVvhSa  208 (396)
T COG0626         137 --DDEALEAAIKE---PNTKLVFLETPSNPLLEVPDIPAIARLAKA--YGALVVVDNTFATPVL-QRPLELGADIVVHSA  208 (396)
T ss_pred             --ChHHHHHHhcc---cCceEEEEeCCCCcccccccHHHHHHHHHh--cCCEEEEECCcccccc-cChhhcCCCEEEEec
Confidence              56666766663   257999999999999999999999999999  8899999999776543 344457899999999


Q ss_pred             CCcccCCCcc--eEEEecHHH-HHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHH
Q 015729          200 QKALSLPTGM--GIVCASPKA-LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE  276 (401)
Q Consensus       200 ~K~l~g~~g~--G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~  276 (401)
                      +|+++|..-+  |++..+++. .+.+...             .+-..|    ...++.   .++..++-++.  +.-+.+
T Consensus       209 TKyl~GHsDvl~G~v~~~~~~~~~~~~~~-------------~~~~~G----~~l~p~---dA~l~lRGlkT--L~~Rm~  266 (396)
T COG0626         209 TKYLGGHSDVLGGVVLTPNEELYELLFFA-------------QRANTG----AVLSPF---DAWLLLRGLRT--LALRME  266 (396)
T ss_pred             cccccCCcceeeeEEecChHHHHHHHHHH-------------HHhhcC----CCCCHH---HHHHHHhccch--HHHHHH
Confidence            9999876543  766655544 3333110             000012    234443   22333332222  466888


Q ss_pred             HHHHHHHHHHHHHHHc-CCc-cccCC----Cc--------cCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCC---
Q 015729          277 RHRRLGKATRLAVEAW-GLK-NCTQK----EE--------WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLN---  339 (401)
Q Consensus       277 ~~~~~~~~l~~~L~~~-g~~-~~~~~----~~--------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~---  339 (401)
                      +..+++..+.+.|++. .++ +.-+.    +.        ...+.++.|++.++.++..+.+.|. -+.+....|..   
T Consensus       267 ~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~~~~~~f~~~L~-l~~~a~SlGgveSL  345 (396)
T COG0626         267 RHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEEAAKKFLDSLK-LFKLAESLGGVESL  345 (396)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCChHHHHHHHHhCC-ccEEeccCCCcccc
Confidence            8899999999999874 322 11111    00        0156689999954322334444442 22333333311   


Q ss_pred             --------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          340 --------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       340 --------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                                          ...++.+|+++..    ||++.+++-|+.+++.+
T Consensus       346 i~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGl----Ed~eDLi~Dl~~Al~~~  395 (396)
T COG0626         346 ISHPATMTHASIPLEERAKAGITDGLVRLSVGL----EDVEDLIADLEQALAKA  395 (396)
T ss_pred             cccccccCcccCCHhHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHHhh
Confidence                                1134679998654    77788888887777643

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.84  E-value=4.2e-18  Score=163.91  Aligned_cols=300  Identities=17%  Similarity=0.139  Sum_probs=199.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcchHHHHHHHHH-------cCC----
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQFSLLWIDQQQR-------LNF----  108 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~-------~g~----  108 (401)
                      +...++.++|.+..+... +.+.|+++|++|++.++..  ......+|+....+||+.....+...       .+.    
T Consensus        96 ~~~~~lae~L~~~~p~~~-~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~  174 (457)
T PRK05639         96 ERAIRVAEKLAEISPIEN-PKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLM  174 (457)
T ss_pred             HHHHHHHHHHHhhCCCCc-CEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCC
Confidence            455578888888765332 3599999999999998843  33445678888888998763322211       111    


Q ss_pred             -cEEEEeCCCCCC--------CCh--------HHHHHHHhcc--CCCCceEEEEEecCCCcccccc----hHHHHHHhhh
Q 015729          109 -NVDVVESDWGEG--------AKL--------DVLASKLAAD--TAHTIKAICIVHNETATGVTNN----LSKVRKLLDE  165 (401)
Q Consensus       109 -~~~~v~~~~~~~--------~d~--------~~le~~~~~~--~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~  165 (401)
                       .+..++.+....        -++        +.+++.+...  ..+++.+|++...+...|.+.+    ++++.++|++
T Consensus       175 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~  254 (457)
T PRK05639        175 PNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDE  254 (457)
T ss_pred             CCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHH
Confidence             234444432110        022        2345444221  1257899999998888888765    7889999999


Q ss_pred             cCCCcEEEEecccccCcc-----eeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHH
Q 015729          166 YRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF  240 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
                        +|+++|+|+++.....     ..+.....+|+++++  |.++++.++|.+++++++.+ ....   . +         
T Consensus       255 --~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~g--K~l~gG~pi~av~~~~~i~~-~~~~---~-~---------  316 (457)
T PRK05639        255 --HGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFG--KGVASGMGLSGVIGRKELMD-LTSG---S-A---------  316 (457)
T ss_pred             --cCCEEEEechhhccCcCchHHHHHhcCCCCCEEEec--hhhcCCCcceeEEehHHHHh-hcCC---C-c---------
Confidence              9999999999873211     111122357988864  99987778899999999877 2211   0 0         


Q ss_pred             hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcCCC--
Q 015729          241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSH--  316 (401)
Q Consensus       241 ~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~--  316 (401)
                         +  +++..++..+++..++++.+.+++   ..++..++.++|++.|+++  ++.+...  ....+.++.+.+-..  
T Consensus       317 ---~--~T~~g~p~~~aaa~a~l~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~~~--VrG~Gl~~gve~~~~~~  386 (457)
T PRK05639        317 ---L--LTPAANPVISAAAEATLEIIEEEN---LLKNALKVGEFIKKRLLEMKESFEVIGD--VRGKGLMIGVEIVKENG  386 (457)
T ss_pred             ---c--cCCCcCHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHHHhCCCEEe--eccceeEEEEEEecCCC
Confidence               1  123456667788888999887754   6677777888899988874  4544332  123455666665211  


Q ss_pred             C-C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          317 I-N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       317 ~-~---~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      . +   ...+.+.|+++ |+.+.+..  ..++.+||.+...+|++|+|+++++++++++++
T Consensus       387 ~~~~~~~~~~~~~~~~~-Gv~~~~~g--~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~  444 (457)
T PRK05639        387 KPDPELTGKICWRAFEL-GLILPSYG--MFGNVIRITPPLVITKEIAEKGLEIMERAIKDA  444 (457)
T ss_pred             CCCHHHHHHHHHHHHhC-CeEEeecC--CCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence            1 1   34677777776 99886531  125789999999999999999999999998765

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.84  E-value=3.7e-18  Score=164.10  Aligned_cols=302  Identities=18%  Similarity=0.130  Sum_probs=189.7

Q ss_pred             HHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcchHHHHHHHHHcCC------------
Q 015729           43 LTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQFSLLWIDQQQRLNF------------  108 (401)
Q Consensus        43 ~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~~g~------------  108 (401)
                      ...++-+.+.+..+.+....++++++|++|++.++..  .+....+|+...++||+............            
T Consensus        85 ~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~  164 (425)
T PRK08088         85 PYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPG  164 (425)
T ss_pred             HHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCC
Confidence            3447777777776654333588999999999988743  23344678888998988763222211110            


Q ss_pred             cEEEE--eCCCCCCCC----hHHHHHHHhcc-CCCCceEEEEEecCCCcccccc----hHHHHHHhhhcCCCcEEEEecc
Q 015729          109 NVDVV--ESDWGEGAK----LDVLASKLAAD-TAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGV  177 (401)
Q Consensus       109 ~~~~v--~~~~~~~~d----~~~le~~~~~~-~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a  177 (401)
                      .+..+  +.+..+ .+    ++.+++.++.. ..++++++++.......|.+.+    +++|.++|++  +|+++|+|++
T Consensus       165 ~~~~~~~p~~~~~-~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~--~~~~lI~Dev  241 (425)
T PRK08088        165 HVYRALYPCPLHG-VSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDE--HGIMLIADEV  241 (425)
T ss_pred             CcEEcCCCccccC-ccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHH--cCCEEEEecc
Confidence            01111  111111 12    55688888621 1146788888877766676664    7889999999  9999999999


Q ss_pred             cccCcc---eeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHH
Q 015729          178 SSICAI---DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQ  254 (401)
Q Consensus       178 ~~~~~~---~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  254 (401)
                      ++....   .+.++..+.+..+.|.+|.++++.++|+++.++++.+.+.....                  ...++.++.
T Consensus       242 ~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G~rig~v~~~~~~~~~~~~~~~------------------~~t~~~~~~  303 (425)
T PRK08088        242 QTGAGRTGTLFAMEQMGVAADLTTFAKSIAGGFPLAGVTGRAEVMDAIAPGGL------------------GGTYAGNPI  303 (425)
T ss_pred             ccCCCcCcchhHHhhcCCCCCEEEEeccccCCCcceeeEecHHHHhhcCCCCC------------------CCCCCcCHH
Confidence            873211   11111223333345567999877778999999999887754311                  113335566


Q ss_pred             HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcCCC--------CCHHHHHH
Q 015729          255 LLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSH--------INSSEIVR  324 (401)
Q Consensus       255 ~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~  324 (401)
                      .++++.+.++....+   +..++.++..+++++.|.++  .++....  ....+.++++.++++        ....++..
T Consensus       304 ~~~a~~~~l~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~  378 (425)
T PRK08088        304 ACAAALAVLKVFEQE---NLLQKANALGEKLKDGLLAIAEKHPEIGD--VRGLGAMIAIELFEDGDHSKPNAKLTAQIVA  378 (425)
T ss_pred             HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeEE--EeccceEEEEEEecCCCCCCCCHHHHHHHHH
Confidence            667777777766543   35555555566666666553  2222211  112266788887322        12567888


Q ss_pred             HHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          325 RAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       325 ~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .+.++ ||.+.++...  ++.+|+++...++++|+++.+++|++++...
T Consensus       379 ~~~~~-Gv~~~~~~~~--~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~  424 (425)
T PRK08088        379 RARDK-GLILLSCGPY--YNVLRILVPLTIEDAQIRQGLEIIAQCFDEA  424 (425)
T ss_pred             HHHhC-CCEEecCCCC--CCEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence            88776 8887654322  4789998887889999999999999998653

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.84  E-value=3e-18  Score=157.15  Aligned_cols=321  Identities=17%  Similarity=0.159  Sum_probs=207.8

Q ss_pred             cccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeE
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRI   87 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~v   87 (401)
                      ...++..+..+.+++.+.+.+... +..+  .+..-++-+.+.+.++.-  +.+-|+++||+|...+++.  -+...|+|
T Consensus        64 p~ilGH~~p~V~~Av~~~l~~G~~-fg~P--te~Ei~~Aell~~~~p~~--e~vrfvnSGTEAtmsAiRlARa~TgR~kI  138 (432)
T COG0001          64 PLILGHAHPAVVEAVQEQLERGLS-FGAP--TELEVELAELLIERVPSI--EKVRFVNSGTEATMSAIRLARAYTGRDKI  138 (432)
T ss_pred             ccccCCCCHHHHHHHHHHHHhcCC-CCCC--CHHHHHHHHHHHHhcCcc--cEEEEecchhHHHHHHHHHHHHhhCCCeE
Confidence            344444444455555555555322 2222  344446778888877652  3499999999999988732  35566899


Q ss_pred             EEEcCCcchHHHHHHHH-HcCC-----------------cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCC
Q 015729           88 ISFLIGQFSLLWIDQQQ-RLNF-----------------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETA  149 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~-~~g~-----------------~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~  149 (401)
                      +...-+||++....+.+ ..|.                 .+..++.+     |++.+++++++.. +++.+|++......
T Consensus       139 ikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN-----D~~al~~~~~~~g-~~IAaVIvEPv~gn  212 (432)
T COG0001         139 IKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN-----DLEALEEAFEEYG-DDIAAVIVEPVAGN  212 (432)
T ss_pred             EEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCC-----CHHHHHHHHHHcC-CcEEEEEeccccCC
Confidence            99999999887212221 1121                 22333333     8999999998865 58999999998888


Q ss_pred             cccccc----hHHHHHHhhhcCCCcEEEEecccccCcceec----cCcccceEEEecCCCcccCCCcceEEEecHHHHHH
Q 015729          150 TGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAIDFR----MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEA  221 (401)
Q Consensus       150 tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~----~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~  221 (401)
                      .|.+.|    ++.+.++|++  +|+++|.|++....-..+.    .-...+|+.+++  |.++|+.++|.+-+++++++.
T Consensus       213 ~g~i~p~~~Fl~~Lr~lt~e--~G~lLI~DEViTGFR~~~gGaq~~~gi~PDlttlG--KiIGGGlP~ga~gGr~eiM~~  288 (432)
T COG0001         213 MGVVPPEPGFLEGLRELTEE--HGALLIFDEVITGFRVALGGAQGYYGVEPDLTTLG--KIIGGGLPIGAFGGRAEIMEQ  288 (432)
T ss_pred             CCCCCCCHHHHHHHHHHHHH--cCcEEEEecchhhcccCCcccccccCcCcchhhhh--hhhcCCcceeeeccHHHHHhh
Confidence            999887    6789999999  9999999999774433321    112235666655  999999999999999999998


Q ss_pred             hccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH----HcCCccc
Q 015729          222 SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVE----AWGLKNC  297 (401)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~----~~g~~~~  297 (401)
                      +.+...            .+..|+   .+-++..+++-.++++.+.+..  ...++..++.+.|++.|+    +.|++..
T Consensus       289 ~~p~g~------------vyqaGT---~sgnplamaAG~atl~~l~~~~--~~y~~l~~~~~~L~~gl~~~~~~~g~~~~  351 (432)
T COG0001         289 LAPLGP------------VYQAGT---LSGNPLAMAAGLATLEELMTEE--GVYERLDALGERLAEGLRAAAERHGIPLT  351 (432)
T ss_pred             hCCCCC------------ccccCC---CCCcHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence            776531            123353   3455566777788888777631  134444555555555554    4477776


Q ss_pred             cCCCccCCceeEEEEcCC-CC---------C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHH
Q 015729          298 TQKEEWFSDTVTAVIVPS-HI---------N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLA  364 (401)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~-~~---------~---~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~  364 (401)
                      ..    +.+..+.+.+.+ +.         +   ...+.+.|+++ ||++.|..+.  ...    ++..++++|||+.++
T Consensus       352 v~----~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~-GV~l~ps~~e--a~f----lS~ahte~di~~~~~  420 (432)
T COG0001         352 VN----RVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNR-GVYLAPSQFE--AGF----LSTAHTEEDIDRTLE  420 (432)
T ss_pred             Ee----eecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhC-CcccCCcccc--cee----eecccCHHHHHHHHH
Confidence            53    223344444422 11         1   12344566666 9988755321  111    333579999999999


Q ss_pred             HHHHHHHhc
Q 015729          365 GVEMILKDV  373 (401)
Q Consensus       365 ~i~~~l~~~  373 (401)
                      +++++++++
T Consensus       421 a~~~~~~~~  429 (432)
T COG0001         421 AADEAFKEL  429 (432)
T ss_pred             HHHHHHHHh
Confidence            999998765

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.84  E-value=5.4e-19  Score=165.77  Aligned_cols=282  Identities=16%  Similarity=0.138  Sum_probs=184.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDW  117 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~  117 (401)
                      ......++++.++++.|.+.   .+.+++|+.|+.+++.+++++||+|+++...|.+..  +.......|+++++++.+.
T Consensus        62 ~~P~~~~lE~~la~leg~~~---av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~  138 (384)
T PRK06434         62 GNPTVQAFEEKYAVLENAEH---ALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDR  138 (384)
T ss_pred             CChhHHHHHHHHHHHhCCCc---EEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCC
Confidence            34667899999999999875   678899999999999999999999999876433333  2356677899999998764


Q ss_pred             CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEe
Q 015729          118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT  197 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~  197 (401)
                      ...++       ++.   +++++|++.++.||++.+.|+++|.++|++  ++  +++|++++.+.. ...-..++|++++
T Consensus       139 ~~~~~-------l~~---~~tklv~~e~~snpt~~v~Di~~I~~la~~--~~--lvVD~t~~s~~~-~~pl~~gaDivv~  203 (384)
T PRK06434        139 LNSLD-------FDP---SNYDLIYAESITNPTLKVPDIKNVSSFCHE--ND--VIVDATFASPYN-QNPLDLGADVVIH  203 (384)
T ss_pred             hhhee-------ecC---CCeeEEEEEcCCCCCceeecHHHHHHHHHH--cC--eEEECCCCCccc-CCchhcCCCEEEe
Confidence            22222       222   357999999999999999999999999999  77  467999764432 2223468999999


Q ss_pred             cCCCcccCCCc--ceEEEecH-HHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHH
Q 015729          198 GSQKALSLPTG--MGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENV  274 (401)
Q Consensus       198 s~~K~l~g~~g--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~  274 (401)
                      |.+|+++|+..  .|.++.++ +..+++....            .  ..|.    ..+.     ..+++-...-.-++.+
T Consensus       204 S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~------------~--~~G~----~~~~-----~~A~l~~~gL~tL~~R  260 (384)
T PRK06434        204 SATKYISGHSDVVMGVAGTNNKSIFNNLVERR------------K--TLGS----NPDP-----IQAYLALRGLKTLGLR  260 (384)
T ss_pred             ecccccCCCCCceEEEEecCcHHHHHHHHHHH------------H--hcCC----CCCH-----HHHHHHHhCCCcHHHH
Confidence            99999987553  37776644 4444433110            0  1121    2333     2333332222236788


Q ss_pred             HHHHHHHHHHHHHHHHHc-CCc-cccC-------CCccCCceeEEEEcCCCCCHHHHHHHHHhhCC---eEEccCCC---
Q 015729          275 IERHRRLGKATRLAVEAW-GLK-NCTQ-------KEEWFSDTVTAVIVPSHINSSEIVRRAWQRYN---LSLGLGLN---  339 (401)
Q Consensus       275 ~~~~~~~~~~l~~~L~~~-g~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---i~v~~g~~---  339 (401)
                      +++.+++++.+.+.|++. .++ +.-|       .-. ..+.++.|.++ +  .++. ..+.++..   +.+..|..   
T Consensus       261 ~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~-g~g~~~sf~l~-~--~~~~-~~f~~~l~l~~~~~slG~~~sl  335 (384)
T PRK06434        261 MEKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLR-GFGGMLSFELR-S--MEDV-HKFIRNLEIPMVAASLGGVESL  335 (384)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcC-CCCceEEEEEC-C--HHHH-HHHHHhCCcceEccCCCCCCee
Confidence            999999999999999975 332 1111       111 23568889984 3  2222 23333323   22222211   


Q ss_pred             --------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          340 --------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       340 --------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                                          ...++.+|||+..    ||.+.+++-|+++|+
T Consensus       336 ~~~p~~~~h~~~~~e~~~~~gi~~~liRlsvGl----Ed~~dLi~dl~~Al~  383 (384)
T PRK06434        336 ITLPVETSHSSLSPEERERLGISDNLVRFSIGI----EDIDDLIKDIENALS  383 (384)
T ss_pred             eECCCccccccCCHHHHHhcCCCcCeEEEEeCc----CCHHHHHHHHHHHhc
Confidence                                0123569998644    677778887777764

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.84  E-value=4.6e-18  Score=164.39  Aligned_cols=303  Identities=19%  Similarity=0.162  Sum_probs=189.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcchHHHHHHHHHc---------C--
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQFSLLWIDQQQRL---------N--  107 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~~---------g--  107 (401)
                      .+...++.++|.+++.....+.+.|+++|++|++.++..  ......+|+....+||+.....+....         +  
T Consensus        96 ~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~  175 (451)
T PRK06918         96 YEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPF  175 (451)
T ss_pred             cHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCC
Confidence            345667888888887543223699999999999998843  234446788888888887632222110         0  


Q ss_pred             -CcEEEEeCCCCC----CCC--------hHHHHHHHhc-cCCCCceEEEEEecCCCcccccc----hHHHHHHhhhcCCC
Q 015729          108 -FNVDVVESDWGE----GAK--------LDVLASKLAA-DTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHP  169 (401)
Q Consensus       108 -~~~~~v~~~~~~----~~d--------~~~le~~~~~-~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~  169 (401)
                       -.+..++.....    ...        .+.+++.+.. ...+++.+|++...+...|.+.+    +++|.++|++  +|
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~--~g  253 (451)
T PRK06918        176 APEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSE--HG  253 (451)
T ss_pred             CCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHH--cC
Confidence             012223322110    011        1234444321 11146788888887777787664    7789999999  99


Q ss_pred             cEEEEecccccCc---ceeccCccc--ceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcC
Q 015729          170 ALFLVDGVSSICA---IDFRMDEWG--IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG  244 (401)
Q Consensus       170 ~~li~D~a~~~~~---~~~~~~~~~--~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  244 (401)
                      +++|+|+++....   ..+.....+  +|++  +.+|.++++.++|+++.++++.+.+.....                +
T Consensus       254 illI~DEV~tg~gr~g~~~a~~~~~v~pDi~--t~sK~l~~G~pig~v~~~~~i~~~~~~~~~----------------~  315 (451)
T PRK06918        254 ILFVADEIQTGFARTGKYFAIEHFDVVPDLI--TVSKSLGAGVPISGVIGRKEIMDESAPGEL----------------G  315 (451)
T ss_pred             CEEEEeccccCcCccCceehhHhcCCCCCEE--eeehhhcCCCccEEEEEcHHHHhccCCCCc----------------C
Confidence            9999999976332   122222233  6765  456999877778999999998776643211                1


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcC-C---CC-
Q 015729          245 TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVP-S---HI-  317 (401)
Q Consensus       245 ~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~-~---~~-  317 (401)
                        ..+..++..+++..++++.+.+.+   ..++..+..+++.+.|+++  ..+....-.  ..+.++.+.+. +   .. 
T Consensus       316 --~T~~g~~l~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~l~~l~~~~~~~~~vr--g~G~~~~~~~~~~~~~~~~  388 (451)
T PRK06918        316 --GTYAGSPLGCAAALAVLDIIEKEN---LNDRAIELGKVVMNRFEEMKNKYNCIGDVR--GLGAMCAFELVQDRKTKEP  388 (451)
T ss_pred             --cCCCcCHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHhhCCCceeec--cceeEEEEEEccCCCcCCC
Confidence              133466666778888888876654   4455566667777777664  333221111  12344444441 1   01 


Q ss_pred             ---CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          318 ---NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       318 ---~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                         ....+.+.+.++ ||.+.++...  ++++|+++...++++++++++++|+++++++
T Consensus       389 ~~~~~~~l~~~~~~~-Gvlv~~~~~~--~~~lrl~p~l~~t~~~id~~l~~l~~~l~~~  444 (451)
T PRK06918        389 DKTLTANICKEANKR-GLLLLSAGTY--GNVIRVLMPLVITDEQLEEGLTIIEESLQAC  444 (451)
T ss_pred             cHHHHHHHHHHHHHC-CeEEeecCCC--CCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence               134566666665 9999876322  4789998776789999999999999999765

>PRK15029 arginine decarboxylase; Provisional

Probab=99.84  E-value=3.2e-18  Score=170.49  Aligned_cols=302  Identities=10%  Similarity=0.013  Sum_probs=211.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC-
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-  118 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-  118 (401)
                      +...+.+.++..|++||++..  .++++|+|.+|.+++.+.+++||+|++.-++|-|..  ......|++++++....+ 
T Consensus       203 p~G~I~eAq~~aA~~fgA~~t--~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~--~al~L~ga~Pvyl~P~~~~  278 (755)
T PRK15029        203 HTGAFGESEKYAARVFGADRS--WSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIE--QGLILTGAKPVYMVPSRNR  278 (755)
T ss_pred             CCcHHHHHHHHHHHHhCCCcE--EEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHH--HHHHHcCCeEEEecccccc
Confidence            345688999999999999874  678999999999999999999999999999988876  346678999999875431 


Q ss_pred             ----CCCC-----hHHHHHHHhccCC------CCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCc-
Q 015729          119 ----EGAK-----LDVLASKLAADTA------HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICA-  182 (401)
Q Consensus       119 ----~~~d-----~~~le~~~~~~~~------~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~-  182 (401)
                          +.++     ++.+++++++++.      .+++++++++| |..|.+.++++|+++|++  ++++|++|+||+... 
T Consensus       279 ~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P-TY~Gv~~di~~I~~~~h~--~~~~llvDEAhGah~~  355 (755)
T PRK15029        279 YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEK--TSDRLHFDEAWYGYAR  355 (755)
T ss_pred             cCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECC-CCcceeeCHHHHHHHHHh--cCCeEEEECccccccc
Confidence                2344     8999999977542      23448888876 568999999999999999  999999999987421 


Q ss_pred             ----cee-c-c-----Ccccce-EEEecCCCcccCCCcceEEEecHH--HHH--HhccCCCCccccchHHHHHHhhcCCC
Q 015729          183 ----IDF-R-M-----DEWGID-VALTGSQKALSLPTGMGIVCASPK--ALE--ASKTAKSVRVFFDWKDYIKFYNLGTF  246 (401)
Q Consensus       183 ----~~~-~-~-----~~~~~d-i~~~s~~K~l~g~~g~G~l~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~  246 (401)
                          ++. . .     ...|+| +++.|.||++.+....+++.++..  .++  ++.            .....+     
T Consensus       356 F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~------------~~l~~~-----  418 (755)
T PRK15029        356 FNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFN------------QAYMMH-----  418 (755)
T ss_pred             cCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHH------------HHHHHH-----
Confidence                111 1 1     125788 899999999988887788887543  111  111            111111     


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHc-C-------------------------------
Q 015729          247 WPYTPSIQLLYGLRAALDLIFE-EGLENVIERHRRLGKATRLAVEAW-G-------------------------------  293 (401)
Q Consensus       247 ~~~~~~~~~~~a~~~al~~~~~-~g~~~~~~~~~~~~~~l~~~L~~~-g-------------------------------  293 (401)
                      .+.+|+...++++..|...+.. .| +...++..+....+++.++++ +                               
T Consensus       419 qSTSPSY~LmASLD~ar~~m~~~~G-~~l~~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  497 (755)
T PRK15029        419 ATTSPLYAICASNDVAVSMMDGNSG-LSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFAD  497 (755)
T ss_pred             cCCCcHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhccccccccccccccccCccccccccccccccccc
Confidence            2346888889999999988775 45 667778888888888888765 3                               


Q ss_pred             -----------CccccCCCc------------cCCceeEEEEcCC-C---------CCHHHHHHHHHhhCCeEEccCCCC
Q 015729          294 -----------LKNCTQKEE------------WFSDTVTAVIVPS-H---------INSSEIVRRAWQRYNLSLGLGLNK  340 (401)
Q Consensus       294 -----------~~~~~~~~~------------~~~~~~~~~~~~~-~---------~~~~~l~~~L~~~~~i~v~~g~~~  340 (401)
                                 +.+..++..            ...+.-+.+..+. +         +++..+.+.| +++||.+....  
T Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~lDp~Klti~~~~~g~sG~~~~~gip~~~l~~~L-~~~gI~~E~~~--  574 (755)
T PRK15029        498 APTKLLTTVQDCWVMHPGESWHGFKDLPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWL-GRHGIVPTRTT--  574 (755)
T ss_pred             cchhhhccccceeeecccccccCcccccccccccCCceEEEEcCCCCCCCcccccCCcHHHHHHHH-HHcCCEEEecC--
Confidence                       111211000            0123334444421 2         3344888888 56699876442  


Q ss_pred             CCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          341 VAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       341 ~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                        ...+-+-+....+++++++++++|.++-+
T Consensus       575 --~~~vL~l~s~g~t~~~~~~L~~aL~~~~~  603 (755)
T PRK15029        575 --DFQIMFLFSMGVTRGKWGTLVNTLCSFKR  603 (755)
T ss_pred             --CCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence              22333323345789999999999988744

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.84  E-value=6.9e-18  Score=162.48  Aligned_cols=324  Identities=13%  Similarity=0.128  Sum_probs=203.2

Q ss_pred             CChHHHHHHHccCcCC----CCCccHHHHHHHHHHHHHHHhcCC-CCceE-EecCChhHHHHHHHhc--cCCCCCeEEEE
Q 015729           19 HIPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTT-SGTPF-LIPTTGTGAWESALTN--TLSPGDRIISF   90 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~g~~-~~~~i-~~~~g~t~a~~~~~~~--~~~~gd~vl~~   90 (401)
                      .-+|.+.+++.++...    +......+...++.++|.+..... ....+ .++++|++|++.++.-  ......+|+..
T Consensus        55 h~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~  134 (442)
T TIGR00709        55 HNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISF  134 (442)
T ss_pred             CCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            3445566665554321    111122355667888888876532 11234 4468999999998843  23444678888


Q ss_pred             cCCcchHHHHHHHHH------cC-----CcEEEEeCCCCCCC--------Ch----HHHHHHHhc--cCCCCceEEEEEe
Q 015729           91 LIGQFSLLWIDQQQR------LN-----FNVDVVESDWGEGA--------KL----DVLASKLAA--DTAHTIKAICIVH  145 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~------~g-----~~~~~v~~~~~~~~--------d~----~~le~~~~~--~~~~~~~~i~~~~  145 (401)
                      ..+||+.....+...      .+     ..+..++.+.....        +.    +.+++.++.  ...+++.++++..
T Consensus       135 ~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Ep  214 (442)
T TIGR00709       135 SGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEA  214 (442)
T ss_pred             cCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEcc
Confidence            888888763222211      11     12233333211111        11    223444431  1113678899998


Q ss_pred             cCCCcccccc----hHHHHHHhhhcCCCcEEEEecccccCcc---eecc--CcccceEEEecCCCcccCCCcceEEEecH
Q 015729          146 NETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---DFRM--DEWGIDVALTGSQKALSLPTGMGIVCASP  216 (401)
Q Consensus       146 ~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~~~~--~~~~~di~~~s~~K~l~g~~g~G~l~~~~  216 (401)
                      +++..|.+.+    ++++.++|++  +|+++|.|+++.....   .+..  ....+|+++++  |.++++.++|.++.++
T Consensus       215 i~g~~G~~~~~~~yl~~lr~lc~~--~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--K~l~~G~Pigav~~~~  290 (442)
T TIGR00709       215 IQGEGGVVAAPSEWLQKIREVTRK--HDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMS--KAVGGGLPLAVLLIAP  290 (442)
T ss_pred             ccCCCCCccCCHHHHHHHHHHHHH--cCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEEc--ccccCCcccEEEEEch
Confidence            8888787753    7889999999  9999999999873321   1111  22347888865  9998777789999988


Q ss_pred             HHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CC
Q 015729          217 KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GL  294 (401)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~  294 (401)
                      + .+.+...                  ....+++.++..+++..++++.+.+++   ..++..++.+++.+.|+++  .+
T Consensus       291 ~-~~~~~~~------------------~~~~T~~gnpla~aaa~a~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~  348 (442)
T TIGR00709       291 E-FDAWQPA------------------GHTGTFRGNQLAMVTGTEALNYWKDDN---LAQNAQERGERITSFLDDMIKEH  348 (442)
T ss_pred             H-HhccCCC------------------cCCCCCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhC
Confidence            8 4444211                  011134566777888889998887654   6668888888888888875  34


Q ss_pred             ccccCCCccCCceeEEEEcCCCC--------------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHH
Q 015729          295 KNCTQKEEWFSDTVTAVIVPSHI--------------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL  360 (401)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~  360 (401)
                      .....  ....+.++.+++.+..              -...+...++++ ||.+.+...  .++.+|+.+...+|++|+|
T Consensus       349 ~~v~~--vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~~~--~~~~l~~~Ppl~it~~ei~  423 (442)
T TIGR00709       349 PCIGN--VRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFEN-GLLLETGGR--EGEVFRLLCPITIDQEECE  423 (442)
T ss_pred             CCeee--eeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHC-CeEEeecCC--CCCEEEEECCCCCCHHHHH
Confidence            43322  2245667777773210              023566667666 998865322  2678999888899999999


Q ss_pred             HHHHHHHHHHHhc
Q 015729          361 GCLAGVEMILKDV  373 (401)
Q Consensus       361 ~~~~~i~~~l~~~  373 (401)
                      +++++++++++++
T Consensus       424 ~~~~~l~~~l~~~  436 (442)
T TIGR00709       424 EGISRFKQAVEEA  436 (442)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.84  E-value=9.3e-18  Score=161.93  Aligned_cols=304  Identities=16%  Similarity=0.062  Sum_probs=202.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--C------CCCCeEEEEcCCcchHHHHHHHHHcCC----
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--L------SPGDRIISFLIGQFSLLWIDQQQRLNF----  108 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~------~~gd~vl~~~~~~~~~~~~~~~~~~g~----  108 (401)
                      .+...++.++|.++..... +.+.|+++|++|++.++...  .      ....+|+....+||+.....+.. .+.    
T Consensus        89 ~~~~~~lae~L~~~~p~~~-~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~-~~~~~~~  166 (466)
T PRK07030         89 HEPVIELSERLVKITPPGL-SRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSV-GDVALFT  166 (466)
T ss_pred             CHHHHHHHHHHHHhCCCCc-CEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhc-cCCcccc
Confidence            3556678888888764222 35999999999999988432  1      12357888888888876332221 111    


Q ss_pred             --------cEEEEeCCCCCC------------CChHHHHHHHhccCCCCceEEEEEe-cCCCcccccc----hHHHHHHh
Q 015729          109 --------NVDVVESDWGEG------------AKLDVLASKLAADTAHTIKAICIVH-NETATGVTNN----LSKVRKLL  163 (401)
Q Consensus       109 --------~~~~v~~~~~~~------------~d~~~le~~~~~~~~~~~~~i~~~~-~~n~tG~~~~----l~~i~~l~  163 (401)
                              .+..++......            -+++.+++.+++.. +++.++++.. ++...|.+.+    ++++.++|
T Consensus       167 ~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~-~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc  245 (466)
T PRK07030        167 ETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHH-DEIAAVIVEPLIQGAGGMRMYHPVYLKLLREAC  245 (466)
T ss_pred             ccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCC-CceEEEEEecccccCCCcccCCHHHHHHHHHHH
Confidence                    122333221100            02466788886543 5789999998 5777788764    78899999


Q ss_pred             hhcCCCcEEEEecccccCcc---ee--ccCcccceEEEecCCCcccCC-CcceEEEecHHHHHHhccCCCCccccchHHH
Q 015729          164 DEYRHPALFLVDGVSSICAI---DF--RMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDY  237 (401)
Q Consensus       164 ~~~~~~~~li~D~a~~~~~~---~~--~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  237 (401)
                      ++  +|+++|.||++.....   .+  +.....+|+++++  |.++++ .++|.+++++++.+.+.......        
T Consensus       246 ~~--~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi~av~~~~ei~~~~~~~~~~~--------  313 (466)
T PRK07030        246 DR--YGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCLS--KALTGGYLPLAAVLTTDTVYQAFYDDYPTL--------  313 (466)
T ss_pred             HH--cCCEEEEeehhhCcCccccchHHHhcCCCCCEEeee--hhccCCcccceEEEecHHHHHHHhcccccc--------
Confidence            99  9999999999763211   11  2223348999886  999877 37899999999987664211000        


Q ss_pred             HHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCC
Q 015729          238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSH  316 (401)
Q Consensus       238 ~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~  316 (401)
                       ..+..++  +++.++..+++..++++.+.+++   ..++..+..+++++.|+++ ......  +....+.++.+++.+.
T Consensus       314 -~~~~h~~--T~~gnpla~aaa~a~L~~i~~~~---l~~~~~~~G~~l~~~L~~l~~~~~v~--~vrG~Gl~~gie~~~~  385 (466)
T PRK07030        314 -RAFLHSH--SYTGNPLACAAALATLDIFEQDN---VIENNRALARRMAEATAHLADHPHVA--EVRQTGMILAIEMVQD  385 (466)
T ss_pred             -cccccCC--CCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHhcCCCEE--EeEeceeEEEEEeccC
Confidence             0001122  33456777888899999988754   6778888899999999886 333222  1224566777776221


Q ss_pred             C--------C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          317 I--------N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       317 ~--------~---~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .        +   ...+.+.++++ |+.+.+.     ++.+|+.+...+|++|+|+++++++++++++
T Consensus       386 ~~~~~~~~~~~~~~~~i~~~~~~~-Gvl~~~~-----g~~i~~~Ppl~it~~eid~~~~~l~~al~~~  447 (466)
T PRK07030        386 KASKTPYPWQERRGLKVYQHALER-GALLRPL-----GSVVYFLPPYVITPEQIDFLAEVASEGIDIA  447 (466)
T ss_pred             ccccccCcchhHHHHHHHHHHHHC-CeEEEec-----CCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence            0        0   13577777766 9988642     4689998888899999999999999999887

>PRK07678 aminotransferase; Validated

Probab=99.83  E-value=8.9e-18  Score=161.87  Aligned_cols=307  Identities=13%  Similarity=0.086  Sum_probs=200.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--C-----CCC-CeEEEEcCCcchHHHHHHHHHcC------
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--L-----SPG-DRIISFLIGQFSLLWIDQQQRLN------  107 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~-----~~g-d~vl~~~~~~~~~~~~~~~~~~g------  107 (401)
                      +...++.++|.+.++..  ..+.|+++|++|++.++...  .     +++ .+|+....+||+.....+.. .+      
T Consensus        89 ~~~~~lae~l~~~~~~~--~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~-~~~~~~~~  165 (451)
T PRK07678         89 EPAIKLAEKLNEWLGGE--YVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAA-TGQAQRKY  165 (451)
T ss_pred             HHHHHHHHHHHHhCCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhc-CCCccccc
Confidence            44567888888887543  35899999999999988431  1     122 57888888888876322221 11      


Q ss_pred             ------CcEEEEeCCCCCCC---------C---hHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHhhh
Q 015729          108 ------FNVDVVESDWGEGA---------K---LDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDE  165 (401)
Q Consensus       108 ------~~~~~v~~~~~~~~---------d---~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~  165 (401)
                            ..+..++.+.....         |   .+.+++.++....+++.+|++.......|.+.+    ++++.++|++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~  245 (451)
T PRK07678        166 KYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQK  245 (451)
T ss_pred             ccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHH
Confidence                  11223332211111         1   233566675322257899999988888888875    7889999999


Q ss_pred             cCCCcEEEEecccc-cCcc--eeccC--cccceEEEecCCCcccCC-CcceEEEecHHHHHHhccCCCCccccchHHHHH
Q 015729          166 YRHPALFLVDGVSS-ICAI--DFRMD--EWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYIK  239 (401)
Q Consensus       166 ~~~~~~li~D~a~~-~~~~--~~~~~--~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (401)
                        +|+++|+||++. +|-.  .+..+  ...+|+++++  |.++++ .++|.+.+++++.+.+.......          
T Consensus       246 --~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt~g--K~lggG~~Pi~av~~~~~i~~~~~~~~~~~----------  311 (451)
T PRK07678        246 --HGALLISDEVICGFGRTGKAFGFMNYGVKPDIITMA--KGITSAYLPLSATAVKKEIYEAFKGKGEYE----------  311 (451)
T ss_pred             --cCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEEee--cccccCCcceeEEEEcHHHHHHHhccCccc----------
Confidence              999999999985 3321  11222  2347888875  999876 47899999999987765321000          


Q ss_pred             HhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcCCC-
Q 015729          240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSH-  316 (401)
Q Consensus       240 ~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~-  316 (401)
                      .+..+  .+++.++..+++..++++.+.+++   ..++..++.+++++.|+++  .......  ....+.++.+.+.+. 
T Consensus       312 ~~~h~--~T~~gnp~~~aaa~a~l~~l~~~~---~~~~~~~~g~~l~~~l~~~~~~~~~v~~--vrg~Gl~~~i~~~~~~  384 (451)
T PRK07678        312 HFRHV--NTFGGNPAACALALKNLEIMENEN---LIERSAQLGELLLEQLKEELGEHPLVGD--IRGKGLLVGIELVNDK  384 (451)
T ss_pred             ccccC--CCCCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHhcCCCEEE--EEeeceEEEEEEecCC
Confidence            00011  244566778888999999887754   6677788888888888653  3333221  123455666766211 


Q ss_pred             -----CC---HHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          317 -----IN---SSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       317 -----~~---~~~l~~~L~~~~~i~v~~g~~--~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                           .+   ..++...|.++ ||.+.+...  +..++.+|+++...+|++|||+++++++++++++
T Consensus       385 ~~~~~~~~~~a~~i~~~l~~~-Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~  450 (451)
T PRK07678        385 ETKEPADNDKVASVVAACKEK-GLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI  450 (451)
T ss_pred             cccCcCchHHHHHHHHHHHHC-CcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence                 01   34677777776 998865321  1224679999888899999999999999999765

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.83  E-value=6.4e-18  Score=161.83  Aligned_cols=324  Identities=12%  Similarity=0.081  Sum_probs=206.3

Q ss_pred             CChHHHHHHHccCcCC----CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC-------CC-CCe
Q 015729           19 HIPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SP-GDR   86 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~-------~~-gd~   86 (401)
                      .-+|++.+++.+....    .......+...++.+++++..+... +.+.++++|++|++.++....       .+ ..+
T Consensus        61 h~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~  139 (427)
T TIGR00508        61 YNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNAL-DCVFLADSGSVAVEVALKMALQYWQAKGEKNRQK  139 (427)
T ss_pred             CCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCC-CEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccE
Confidence            4445566555553321    1111123445677788888765332 359999999999998884311       12 367


Q ss_pred             EEEEcCCcchHHHHHHHHHcCC-------------cEEEEeCCCCC------CCChHHHHHHHhccCCCCceEEEEEec-
Q 015729           87 IISFLIGQFSLLWIDQQQRLNF-------------NVDVVESDWGE------GAKLDVLASKLAADTAHTIKAICIVHN-  146 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~------~~d~~~le~~~~~~~~~~~~~i~~~~~-  146 (401)
                      |+....+||+.....+.. .+-             ....++.....      .-|.+++++.+.+.. +++++|++... 
T Consensus       140 il~~~~~yHG~t~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~-~~vaavivEPv~  217 (427)
T TIGR00508       140 FLTIRSGYHGDTFGAMSV-CDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHS-DEIAAVILEPIV  217 (427)
T ss_pred             EEEEcCCcCCccHhhhcc-cCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcC-CcEEEEEEechh
Confidence            999999999875322221 110             11122221110      114567788886543 46788888875 


Q ss_pred             CCCccccc----chHHHHHHhhhcCCCcEEEEecccccCcc-----eeccCcccceEEEecCCCcccCC-CcceEEEecH
Q 015729          147 ETATGVTN----NLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCASP  216 (401)
Q Consensus       147 ~n~tG~~~----~l~~i~~l~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~  216 (401)
                      ++..|...    .++++.++|++  +|+++|+|++|.....     ..+.....+|++++  .|.++|+ ..++.++.++
T Consensus       218 ~g~gG~~~~~~~~l~~l~~lc~~--~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~~--gK~l~gG~~p~~a~~~~~  293 (427)
T TIGR00508       218 QGAGGMRFYHPTYLKRVQALCKQ--YDILLIADEIATGFGRTGKLFACEHAGVVPDILCV--GKALTGGYMTLSATVTTD  293 (427)
T ss_pred             cCcCCcccCCHHHHHHHHHHHHH--cCCEEEEeccccCCCcCCccchhhhcCCCCCEEEe--chhhhcCcccceEEEEcH
Confidence            55556544    47889999999  9999999999852211     11112335788875  5999766 3678899999


Q ss_pred             HHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 015729          217 KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKN  296 (401)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~  296 (401)
                      ++.+.+.......+.           .++  +++.++..++++.++++.+.+++   ..++.+++.+++++.|++++...
T Consensus       294 ~~~~~~~~~~~~~~~-----------~~~--T~~g~p~~~aaa~a~l~~l~~~~---~~~~~~~~~~~l~~~L~~l~~~~  357 (427)
T TIGR00508       294 KVAQTISSGEAGCFM-----------HGP--TFMGNPLACAVAEASLAILLEGE---WQKQVSAIENQLKRELSPLRKNP  357 (427)
T ss_pred             HHHHHHhcCCCCccc-----------cCC--CCCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHhhcCC
Confidence            987777532110000           011  22346777788889999887654   46888889999999998873221


Q ss_pred             ccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          297 CTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .. ......+.++.+.+.+..+...+.+.|.++ ||.+.+.     +..+|+++...+|++|||++++++++++.+
T Consensus       358 ~i-~~vrg~G~~~~i~~~~~~~~~~~~~~l~~~-Gv~~~~~-----~~~l~~~ppl~~t~~~id~~~~~l~~~l~~  426 (427)
T TIGR00508       358 VV-KDVRVLGAIGVVEMYKPVNVEELQKKFVEQ-GVWIRPF-----GKLIYVMPPYIITTEQLQKLTAALIEALHE  426 (427)
T ss_pred             CE-EeEeccccEEEEEECCccCHHHHHHHHHHC-CeEEEec-----CCEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence            11 111123556777774434567888899877 9988643     347999888889999999999999999864

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.83  E-value=7.2e-18  Score=160.96  Aligned_cols=299  Identities=15%  Similarity=0.101  Sum_probs=196.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--C-----CC-CCeEEEEcCCcchHHHHHHHHHcC------
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--L-----SP-GDRIISFLIGQFSLLWIDQQQRLN------  107 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~-----~~-gd~vl~~~~~~~~~~~~~~~~~~g------  107 (401)
                      +...++.++|.+..+... +.+.|+++|++|++.++...  .     .+ ..+|+....+||+.....+....+      
T Consensus        83 ~~~~~lae~L~~~~p~~~-~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~  161 (422)
T PRK05630         83 EPAIKLTRKLLNLTDNGL-DHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHS  161 (422)
T ss_pred             HHHHHHHHHHHhhCCCCc-CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccc
Confidence            445678888888764322 35999999999999988431  1     12 357899998899865322221100      


Q ss_pred             ------CcEEEEeCCCCCCCC-------hHHHHHHHhccCCCCceEEEEEec-CCCcccccc----hHHHHHHhhhcCCC
Q 015729          108 ------FNVDVVESDWGEGAK-------LDVLASKLAADTAHTIKAICIVHN-ETATGVTNN----LSKVRKLLDEYRHP  169 (401)
Q Consensus       108 ------~~~~~v~~~~~~~~d-------~~~le~~~~~~~~~~~~~i~~~~~-~n~tG~~~~----l~~i~~l~~~~~~~  169 (401)
                            -....++.+.....+       .+.+++.+.    +++.+|++... +...|...+    ++++.++|++  +|
T Consensus       162 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~--~g  235 (422)
T PRK05630        162 LWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLID----ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDK--HD  235 (422)
T ss_pred             cccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHh----hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHH--cC
Confidence                  122333332211111       234455454    36789999985 777787654    7889999999  99


Q ss_pred             cEEEEecccccCcc---e--eccCcccceEEEecCCCcccCC-CcceEEEecHHHHHHhccCCCCccccchHHHHHHhhc
Q 015729          170 ALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL  243 (401)
Q Consensus       170 ~~li~D~a~~~~~~---~--~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (401)
                      +++|+||++.....   .  ++.....+|+++++  |.++|+ ..+|.+++++++.+.+.......          .+.-
T Consensus       236 ~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t~g--K~l~gG~~p~~av~~~~~i~~~~~~~~~~~----------~~~h  303 (422)
T PRK05630        236 ILLIADEIATGFGRTGELFATLAAGVTPDIMCVG--KALTGGFMSFAATLCTDKVAQLISTPNGGG----------ALMH  303 (422)
T ss_pred             CEEEEecceeCCCcCchhhHHHhcCCCCCeeeee--chhhcCccccceeeccHHHHHHHhccCCCC----------cccc
Confidence            99999999863221   1  12223347888664  999665 46799999999877664210000          0111


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHHH
Q 015729          244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEI  322 (401)
Q Consensus       244 g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  322 (401)
                      ++  +++.++..+++..++++.+.+++   ..++..++.+++++.|+++ ..+.+.  +....+.++.+++.+..+...+
T Consensus       304 ~~--T~~g~Pla~aaa~aaL~~l~~~~---~~~~~~~~g~~l~~~L~~l~~~~~v~--~vRg~Gl~~~ie~~~~~~~~~~  376 (422)
T PRK05630        304 GP--TFMANPLACAVAHASLEIIETGM---WRKQVKRIEAELIAGLSPLAHLPGVA--DVRVLGAIGVVEMEQPVDMEEA  376 (422)
T ss_pred             CC--CCcCCHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHhhcCCCee--eeeccccEEEEEECCcccHHHH
Confidence            22  34567778888999999987754   4567788888888888765 222222  1223466788888443346688


Q ss_pred             HHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          323 VRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       323 ~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .+.++++ |+.+.+.     ++.+||.+...+|++|+|+++++++++++.
T Consensus       377 ~~~~~~~-Gl~~~~~-----g~~l~~~PpL~it~~~i~~~~~~l~~al~~  420 (422)
T PRK05630        377 TQAAVDH-GVWLRPF-----GRLVYVMPPYITTSEQIAQICAALAAAVKA  420 (422)
T ss_pred             HHHHHHC-CeEEEec-----CCEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence            8888876 9988642     468999888899999999999999999863

>PRK06917 hypothetical protein; Provisional

Probab=99.83  E-value=2e-17  Score=159.14  Aligned_cols=307  Identities=13%  Similarity=0.057  Sum_probs=199.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--------CCCCCeEEEEcCCcchHHHHHHHHHcCC----
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--------LSPGDRIISFLIGQFSLLWIDQQQRLNF----  108 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~~~~~~g~----  108 (401)
                      .+...++.++|.+.+.... +.+.|+++||+|++.++...        .....+|+....+||+.....+.. .+.    
T Consensus        73 ~~~~~~lae~L~~~~p~~~-~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~-~~~~~~~  150 (447)
T PRK06917         73 SEPAEKLAKKLSDLSPGDL-NWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSM-SGHPLRR  150 (447)
T ss_pred             CHHHHHHHHHHHHhCCCCC-CEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHh-cCCcccc
Confidence            3556678888888775432 35899999999999988532        122367888888888876333321 111    


Q ss_pred             --------cEEEEeCCCCCC--C----------ChHHHHHHHhccCCCCceEEEEEecCCC-cccccc----hHHHHHHh
Q 015729          109 --------NVDVVESDWGEG--A----------KLDVLASKLAADTAHTIKAICIVHNETA-TGVTNN----LSKVRKLL  163 (401)
Q Consensus       109 --------~~~~v~~~~~~~--~----------d~~~le~~~~~~~~~~~~~i~~~~~~n~-tG~~~~----l~~i~~l~  163 (401)
                              .+..++.+....  .          +++.+++.+++...+++.+|++...... .|.+.+    ++++.++|
T Consensus       151 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc  230 (447)
T PRK06917        151 QRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEIC  230 (447)
T ss_pred             ccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHH
Confidence                    112222111100  0          2457777776543346899999987654 456554    77899999


Q ss_pred             hhcCCCcEEEEecccccCcc---ee--ccCcccceEEEecCCCcccCCC-cceEEEecHHHHHHhccCCCCccccchHHH
Q 015729          164 DEYRHPALFLVDGVSSICAI---DF--RMDEWGIDVALTGSQKALSLPT-GMGIVCASPKALEASKTAKSVRVFFDWKDY  237 (401)
Q Consensus       164 ~~~~~~~~li~D~a~~~~~~---~~--~~~~~~~di~~~s~~K~l~g~~-g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  237 (401)
                      ++  +|+++|+||++.....   .+  ......+|+++++  |.++++. ++|.+.+++++.+.+..... .        
T Consensus       231 ~~--~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~~g--K~l~~G~~Pi~a~~~~~~i~~~~~~~~~-~--------  297 (447)
T PRK06917        231 DH--YDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTLG--KGLGAGYTPIAATVVSDRVMEPILRGSR-S--------  297 (447)
T ss_pred             HH--cCCEEEEechhhCcCcccchhhHHhcCCCCCEEEee--ehhccCCcceEEEEEcHHHHHHHhccCc-c--------
Confidence            99  9999999999863211   11  1123347888775  9997764 68999999998776643210 0        


Q ss_pred             HHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcC-
Q 015729          238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVP-  314 (401)
Q Consensus       238 ~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~-  314 (401)
                         +..++  +++.++..+++..++++.+.+++   ..++..++.++|++.|+++  ...+..  .....+.++.+++- 
T Consensus       298 ---~~~~~--T~~gnpl~~aaa~a~l~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~i~--~vrG~Gl~~~ie~~~  367 (447)
T PRK06917        298 ---IMSGH--TLSANPLSAATALAVLEYMEKHN---LPEKAAEKGEYLIKGLQKVQQQSTIIG--DVRGKGLLIGVEFVA  367 (447)
T ss_pred             ---ccccc--CCCCCHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHhcCCCEE--EEeecceEEEEEEec
Confidence               00111  33456677888899999887654   6778888888888888875  243322  12235566767662 


Q ss_pred             CC-----C-----CHHHHHHHHHhhCCeEEccCCC---CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          315 SH-----I-----NSSEIVRRAWQRYNLSLGLGLN---KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       315 ~~-----~-----~~~~l~~~L~~~~~i~v~~g~~---~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +.     .     -...+.+.++++ ||.+.+...   ...++.+|+++...+|++|+|+++++++++++++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~  438 (447)
T PRK06917        368 DKKTKQPFSKSQAVASELISVAAKN-GLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEM  438 (447)
T ss_pred             cCCcCCCCcchhHHHHHHHHHHHhC-CcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence            11     0     134567777766 999875421   1125689998888899999999999999999765

>PRK07483 hypothetical protein; Provisional

Probab=99.83  E-value=1.2e-17  Score=160.48  Aligned_cols=339  Identities=15%  Similarity=0.100  Sum_probs=210.2

Q ss_pred             cccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cC-----C
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TL-----S   82 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~-----~   82 (401)
                      +.+++.++..+.+++.+.+.+....+......+...++.++|.+...... +.+.|+++|++|++.++..  ..     +
T Consensus        41 ~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-~~v~f~~sGsEAve~AlklAr~~~~~~g~  119 (443)
T PRK07483         41 VSCLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVAAAPAGL-EHVYFVSGGSEAVEAALKLARQYFVEIGQ  119 (443)
T ss_pred             hhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCC-CEEEEcCCcHHHHHHHHHHHHHHHHhcCC
Confidence            33444444444444445544321111111223445677788887764322 3599999999999998842  12     1


Q ss_pred             CC-CeEEEEcCCcchHHHHHHHHH--------cC---CcEEEEeCCCCCCC-------------ChHHHHHHHhccCCCC
Q 015729           83 PG-DRIISFLIGQFSLLWIDQQQR--------LN---FNVDVVESDWGEGA-------------KLDVLASKLAADTAHT  137 (401)
Q Consensus        83 ~g-d~vl~~~~~~~~~~~~~~~~~--------~g---~~~~~v~~~~~~~~-------------d~~~le~~~~~~~~~~  137 (401)
                      ++ .+|+....+||+.....+...        .+   ..+..++.....+.             .++++++.+.+...++
T Consensus       120 ~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  199 (443)
T PRK07483        120 PQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELGPDT  199 (443)
T ss_pred             CCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            23 568888888888763222211        00   01223332211110             0256776665322246


Q ss_pred             ceEEEEEecCC-Ccccccc----hHHHHHHhhhcCCCcEEEEecccccCcc---ee--ccCcccceEEEecCCCcccCCC
Q 015729          138 IKAICIVHNET-ATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---DF--RMDEWGIDVALTGSQKALSLPT  207 (401)
Q Consensus       138 ~~~i~~~~~~n-~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~~--~~~~~~~di~~~s~~K~l~g~~  207 (401)
                      +.+|++...+. ..|.+.+    ++.+.++|++  +|+++|+||++.....   .+  +.....+|+++++  |.++++.
T Consensus       200 iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~--~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--K~l~gG~  275 (443)
T PRK07483        200 VAAFVAETVVGATAGAVPPVPGYFKRIREVCDR--YGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTIA--KGLGAGY  275 (443)
T ss_pred             eEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHH--hCCEEEEecceeCcccCcHHHHHhhcCCCCCeeeeh--hhhccCc
Confidence            88999998875 3576664    7889999999  9999999999763321   11  1123347888886  9998774


Q ss_pred             -cceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 015729          208 -GMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATR  286 (401)
Q Consensus       208 -g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~  286 (401)
                       ++|.+++++++.+.+.... .           .+..++  +++.++..+++..++++.+.+++   ..++..+..++|+
T Consensus       276 ~Pi~av~~~~~i~~~~~~~~-~-----------~~~h~~--T~~gnpl~~aaa~a~l~~i~~~~---l~~~~~~~g~~l~  338 (443)
T PRK07483        276 QPIGAVLASDRIYDAIADGS-G-----------FFQHGH--TYLGHATACAAALAVQRVIAEDG---LLANVRARGEQLR  338 (443)
T ss_pred             cccEEEEEcHHHHHHHhcCC-C-----------ccccCC--CCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHH
Confidence             7899999999877664310 0           011122  33456677888899999888754   6777888888888


Q ss_pred             HHHHHc--CCccccCCCccCCceeEEEEcCCC------CC-----HHHHHHHHHhhCCeEEccCCC---CCCCcEEEEee
Q 015729          287 LAVEAW--GLKNCTQKEEWFSDTVTAVIVPSH------IN-----SSEIVRRAWQRYNLSLGLGLN---KVAGKVFRIGH  350 (401)
Q Consensus       287 ~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~------~~-----~~~l~~~L~~~~~i~v~~g~~---~~~~~~~Ri~~  350 (401)
                      +.|+++  ..+....  ....+.++.+++.+.      .+     ...+.+.++++ |+.+.+...   ...++.+||.+
T Consensus       339 ~~L~~l~~~~~~i~~--vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~~~~~~~~~~~~l~~~P  415 (443)
T PRK07483        339 ARLRERLGQHPHVGD--IRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMAR-GLMVYPMGGTIDGVRGDHVLLAP  415 (443)
T ss_pred             HHHHHHHhcCCCeee--EeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHC-CcEEEecCccccCCCCCEEEEEC
Confidence            888764  4443221  223455666766211      01     24577777776 998865421   11256899998


Q ss_pred             cccCCHHHHHHHHHHHHHHHHhc
Q 015729          351 LGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       351 ~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ...+|++|+|+++++++++++++
T Consensus       416 pL~it~~eid~~~~~l~~~l~~~  438 (443)
T PRK07483        416 PFIITAAQIDEIVERLGDAIDAA  438 (443)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999753

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.83  E-value=1.1e-17  Score=161.28  Aligned_cols=326  Identities=16%  Similarity=0.093  Sum_probs=207.5

Q ss_pred             CChHHHHHHHccCcCC--C--CCccHHHHHHHHHHHHHHHhcCC----CCceEEecCChhHHHHHHHhcc--C-----CC
Q 015729           19 HIPDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTT----SGTPFLIPTTGTGAWESALTNT--L-----SP   83 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~--~--~~~~~~~~~~~l~~~la~~~g~~----~~~~i~~~~g~t~a~~~~~~~~--~-----~~   83 (401)
                      .-+|++.+++.++...  +  ......+...++-++|.+.+...    .-+.+.|+++|++|++.++...  .     ++
T Consensus        80 h~~p~i~~Ai~~q~~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~  159 (472)
T PRK08742         80 HAEPRIGAAIAAQAGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEH  159 (472)
T ss_pred             CCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCC
Confidence            3456666666554321  1  11112344567778887776431    1246999999999999988431  1     12


Q ss_pred             -CCeEEEEcCCcchHHHHHHHHHcCC------------cEEEEeCCCCCC------------CChHHHHHHHhccCCCCc
Q 015729           84 -GDRIISFLIGQFSLLWIDQQQRLNF------------NVDVVESDWGEG------------AKLDVLASKLAADTAHTI  138 (401)
Q Consensus        84 -gd~vl~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~------------~d~~~le~~~~~~~~~~~  138 (401)
                       ..+|+....+||+.....+.. .+.            .+..++.+....            .+++.+++.++... +++
T Consensus       160 ~r~~ii~~~~syHG~t~gals~-~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i  237 (472)
T PRK08742        160 RRTRFIALENGYHGETIGALAV-GDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSP-GEI  237 (472)
T ss_pred             CCcEEEEECCCcCCCchhhhhc-cCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhCC-Cce
Confidence             367899999888876322221 111            123333322111            12567777776433 578


Q ss_pred             eEEEEEe-cCCCcccccc----hHHHHHHhhhcCCCcEEEEecccccCcc---ee--ccCcccceEEEecCCCcccCCC-
Q 015729          139 KAICIVH-NETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---DF--RMDEWGIDVALTGSQKALSLPT-  207 (401)
Q Consensus       139 ~~i~~~~-~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~~--~~~~~~~di~~~s~~K~l~g~~-  207 (401)
                      .+|++.. ..+..|.+.+    ++++.++|++  +|+++|.||++.....   .+  +.....+|+++++  |.++|+. 
T Consensus       238 AAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~--~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~g--Kgl~gG~~  313 (472)
T PRK08742        238 CALILEPRLQCAGGMRMHHPAYLRRARELCDA--HGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLS--KGLTGGFL  313 (472)
T ss_pred             EEEEEccccccCCCcccCCHHHHHHHHHHHHH--cCCEEEEechhhCCCCCccchHHHhcCCCCCEEEEc--ccccCCCC
Confidence            8999987 4777787664    7889999999  9999999999763311   11  2223347998886  9997773 


Q ss_pred             cceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 015729          208 GMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRL  287 (401)
Q Consensus       208 g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~  287 (401)
                      ++|.+++++++.+.+........          +.-++  +++.++..+++..++++.+.+++   ..++..+..+++.+
T Consensus       314 Plaav~~~~ei~~~~~~~~~~~~----------~~h~~--T~~gnpl~~Aaa~a~L~~i~~~~---l~~~~~~~g~~l~~  378 (472)
T PRK08742        314 PLSAVLATQQLYDAFLDDSRERA----------FLHSH--SYTGNPLACAAALATLDIFADDD---VIARNQPTAARMTQ  378 (472)
T ss_pred             CcceeeccHHHHHHhhccCccCc----------cCcCC--CCCccHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHH
Confidence            78999999998776642110000          00122  34456777889999999988765   55666666777776


Q ss_pred             HHHHc-CCccccCCCccCCceeEEEEcCCC-C-----C-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCC
Q 015729          288 AVEAW-GLKNCTQKEEWFSDTVTAVIVPSH-I-----N-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLN  355 (401)
Q Consensus       288 ~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~-----~-----~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~  355 (401)
                      .++.+ .+....  +....+.++.+++... .     +     ...+.+.++++ ||.+.+.     ++.+||.+...+|
T Consensus       379 ~~~~~~~~~~i~--dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~-----g~vi~~~PpL~it  450 (472)
T PRK08742        379 LAAQIGEHPHVA--DVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALAR-GVVLRPL-----GDVLYWMPPYCVD  450 (472)
T ss_pred             HHHHHhcCCCee--eEeccceEEEEEeccCccccccCCchhHHHHHHHHHHHHC-CeEEEec-----CCEEEEECCCCCC
Confidence            66554 333322  2234566777777321 0     1     13566777766 9988642     4689999888999


Q ss_pred             HHHHHHHHHHHHHHHHhc
Q 015729          356 ELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       356 ~~di~~~~~~i~~~l~~~  373 (401)
                      ++|+|+++++++++++++
T Consensus       451 ~~ei~~~~~~l~~~l~~~  468 (472)
T PRK08742        451 EAQLALLADTTRHAIDEA  468 (472)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999764

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.82  E-value=2.6e-17  Score=154.10  Aligned_cols=302  Identities=14%  Similarity=0.088  Sum_probs=197.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC------
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES------  115 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~------  115 (401)
                      ..+.++++.+++++|.+.   ++.+++||.|++++....+++||.|  +.+.++.... ......|+..+.+..      
T Consensus        78 ~s~~~LE~~vAe~lG~e~---aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~-ahI~~~Ga~fvDi~~d~a~~~  151 (460)
T PRK13237         78 RNFYHLEETVQEYYGFKH---VVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTR-YHQELNGGIFVDIIIDEAHDA  151 (460)
T ss_pred             CcHHHHHHHHHHHHCCCe---EEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhH-HHHHhCCcEEEeeeccccccc
Confidence            446699999999999987   8999999999998766678999965  5454554432 223556775444421      


Q ss_pred             ----CCCCCCChHHHHHHHhccCCCCceEEEEEecCCCc-cccc---chHHHHHHhhhcCCCcEEEEecccccCccee--
Q 015729          116 ----DWGEGAKLDVLASKLAADTAHTIKAICIVHNETAT-GVTN---NLSKVRKLLDEYRHPALFLVDGVSSICAIDF--  185 (401)
Q Consensus       116 ----~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~t-G~~~---~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~--  185 (401)
                          +.++.+|++.+++.+++....++.++.+..++|.. |...   ++++|.++|++  +|+.||.|+|+.++...+  
T Consensus       152 ~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~--~Gl~Vi~DaAra~gna~fI~  229 (460)
T PRK13237        152 QSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDK--HGIKVFFDATRCVENAYFIK  229 (460)
T ss_pred             ccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHH--cCCEEEEECcchhcChhhhc
Confidence                23568999999999986433455667777777777 5665   57899999999  999999999998874321  


Q ss_pred             ----cc--Cc---------ccceEEEecCCCcccCCCcceEEEecH-HHHHHhccCCCCccccchHHHHHHhhcCCCCCC
Q 015729          186 ----RM--DE---------WGIDVALTGSQKALSLPTGMGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY  249 (401)
Q Consensus       186 ----~~--~~---------~~~di~~~s~~K~l~g~~g~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  249 (401)
                          ..  ..         -..|+.++|.+|.+.++.| |++++++ ++.++++......             -|.-..+
T Consensus       230 ~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~G-G~i~t~D~eL~~~~r~~~~~~-------------eG~~tyg  295 (460)
T PRK13237        230 EREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIG-GFLAMNDEELFDEAKELVVVY-------------EGMPSYG  295 (460)
T ss_pred             ccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCc-eEEEECCHHHHHHHHHhcccc-------------CCCcCCC
Confidence                11  11         1479999999999977766 6776654 5556555432210             0110011


Q ss_pred             CCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEc----C----CCCCHHH
Q 015729          250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV----P----SHINSSE  321 (401)
Q Consensus       250 ~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~  321 (401)
                      ..+.--+.++..++.....   ....++..+..++|.+.|.+.|+++..+.++    .-+.+..    |    +..++..
T Consensus       296 g~~grd~~alAvgl~E~~~---~~y~~~ri~~~~~l~~~L~~~Gvpv~~p~gg----H~v~vda~~~lph~~~~~~p~~a  368 (460)
T PRK13237        296 GMAGRDMEAMAIGIEESVQ---YEYIEHRVGQVRYLGEKLLAAGVPIVEPVGG----HAVFLDARRFLPHLPQDQFPAQA  368 (460)
T ss_pred             ChhhhHHHHHHhHHHhhch---HHHHHHHHHHHHHHHHHHHHCCCceecCCCc----eEEEEEhHHhCCCCCcccChHHH
Confidence            1111122233333332222   2456666678899999999999999875322    2333432    2    2357788


Q ss_pred             HHHHHHhhCCeEE------ccCCCCCCC-------cEEEEeecc-cCCHHHHHHHHHHHHHHHHh
Q 015729          322 IVRRAWQRYNLSL------GLGLNKVAG-------KVFRIGHLG-HLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       322 l~~~L~~~~~i~v------~~g~~~~~~-------~~~Ri~~~~-~~~~~di~~~~~~i~~~l~~  372 (401)
                      ++..|....||.-      ..|.++..+       ..+|+.+.- ..|.+.+|...+++.++.+.
T Consensus       369 l~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~  433 (460)
T PRK13237        369 LAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKH  433 (460)
T ss_pred             HHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHh
Confidence            9999887667763      122222211       348986544 66889999999999988754

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.82  E-value=3.8e-18  Score=150.98  Aligned_cols=306  Identities=17%  Similarity=0.107  Sum_probs=195.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCC
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE  119 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  119 (401)
                      .....++++|+.+-|.-.   .+.+.+|..|+..++.++.++||+|+....-|-+.+  +....+..|+++++|+.+   
T Consensus        62 PT~~vlE~RiAaLEGG~a---a~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~---  135 (426)
T COG2873          62 PTTDVLEERIAALEGGVA---ALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPD---  135 (426)
T ss_pred             chHHHHHHHHHHhhcchh---hhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCC---
Confidence            456689999999887765   577889999999999999999999998876444433  455668899999999866   


Q ss_pred             CCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecC
Q 015729          120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS  199 (401)
Q Consensus       120 ~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~  199 (401)
                        |++.+++++++    ++|+|++....||.+.+.|++.|.++||+  +|+++|+|.+-+.+. -+..-++|+||++.|.
T Consensus       136 --d~~~~~~aI~~----nTkavf~EtigNP~~~v~Die~ia~iAh~--~gvpliVDNT~atpy-l~rP~~hGADIVvHS~  206 (426)
T COG2873         136 --DPENFEAAIDE----NTKAVFAETIGNPGLDVLDIEAIAEIAHR--HGVPLIVDNTFATPY-LCRPIEHGADIVVHSA  206 (426)
T ss_pred             --CHHHHHHHhCc----ccceEEEEeccCCCccccCHHHHHHHHHH--cCCcEEEecCCCcce-ecchhhcCCCEEEEee
Confidence              79999999996    55999999999999999999999999999  999999998866442 2344567899999999


Q ss_pred             CCcccCC-CcceEEEecHHHHHHh-----ccCCCC-cccc--chHH------HH-H-HhhcCCCCCCCCcHHHHHHHHHH
Q 015729          200 QKALSLP-TGMGIVCASPKALEAS-----KTAKSV-RVFF--DWKD------YI-K-FYNLGTFWPYTPSIQLLYGLRAA  262 (401)
Q Consensus       200 ~K~l~g~-~g~G~l~~~~~~~~~~-----~~~~~~-~~~~--~~~~------~~-~-~~~~g~~~~~~~~~~~~~a~~~a  262 (401)
                      +||++|- ..+|-+++.....+..     +....+ ..|.  .+.+      +. + +..-.+.+..+.++.+..-+...
T Consensus       207 TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqG  286 (426)
T COG2873         207 TKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQG  286 (426)
T ss_pred             cccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhc
Confidence            9999653 2344444433222222     111110 1111  1111      00 0 00001111224555433322222


Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CC---ccc--cC---------CCccCCceeEEEEcCCCCC-HHHHHHHH
Q 015729          263 LDLIFEEGLENVIERHRRLGKATRLAVEAW-GL---KNC--TQ---------KEEWFSDTVTAVIVPSHIN-SSEIVRRA  326 (401)
Q Consensus       263 l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~---~~~--~~---------~~~~~~~~~~~~~~~~~~~-~~~l~~~L  326 (401)
                      ++     -+.-+++|.++|+..+.+.|++- .+   ...  ..         .-....+.++.|.+.++.+ ...+.+.|
T Consensus       287 lE-----TL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl~~g~g~vltF~~kgg~ea~~~fi~~l  361 (426)
T COG2873         287 LE-----TLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGGYEAGKKFIDAL  361 (426)
T ss_pred             hh-----hhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhccCCCceEEEEEecChHHHHHHHHHHH
Confidence            22     14567888999999999999873 22   111  11         0012345688888855522 22343333


Q ss_pred             H------h---hCCeEEccCCC-------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          327 W------Q---RYNLSLGLGLN-------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       327 ~------~---~~~i~v~~g~~-------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      .      +   -.-+.+.|-+.             ...++.+|+|+.    -||++.++.-|+..++
T Consensus       362 ~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~IRlSVG----IEd~~DiiaDl~qAl~  424 (426)
T COG2873         362 KLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVG----IEDIDDIIADLEQALE  424 (426)
T ss_pred             HHHHhhccccccceeEecCcccchhcCCHHHHHhcCCCCCcEEEEec----cCCHHHHHHHHHHHHh
Confidence            2      1   11244444322             113456999864    4777777777776664

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.82  E-value=2e-17  Score=159.68  Aligned_cols=326  Identities=16%  Similarity=0.097  Sum_probs=209.2

Q ss_pred             CChHHHHHHHccCcCC--C--CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC-------CC-CCe
Q 015729           19 HIPDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SP-GDR   86 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~--~--~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~-------~~-gd~   86 (401)
                      .-+|+|.+++.++...  +  ......+...++.++|++++.... +.+.|+++|++|++.++....       .+ ..+
T Consensus        72 h~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~-~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~  150 (460)
T PRK06916         72 HQVPELDEAIREQLNKIAHSTLLGLANVPSILLAEKLIEVVPEGL-KKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQR  150 (460)
T ss_pred             CCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCC-CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcE
Confidence            4455566665554332  1  111123445678888888775322 359999999999999884311       12 367


Q ss_pred             EEEEcCCcchHHHHHHHHHcC------------CcEEEEeCCCCCC------------CChHHHHHHHhccCCCCceEEE
Q 015729           87 IISFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGEG------------AKLDVLASKLAADTAHTIKAIC  142 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~------------~d~~~le~~~~~~~~~~~~~i~  142 (401)
                      |+....+||+.....+.- .+            .....++.+...+            -+++++++.++... +++.+|+
T Consensus       151 ii~~~~~YHG~t~~als~-s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~iAAvi  228 (460)
T PRK06916        151 FVTLKNAYHGDTIGAVSV-GAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKH-EEIAAII  228 (460)
T ss_pred             EEEECCcCCcccHHhHhc-cCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCC-CcEEEEE
Confidence            899999998866322211 11            0123333221100            13566777776433 5789999


Q ss_pred             EEe-cCCCcccccc----hHHHHHHhhhcCCCcEEEEecccccCcc---e--eccCcccceEEEecCCCcccCC-CcceE
Q 015729          143 IVH-NETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLP-TGMGI  211 (401)
Q Consensus       143 ~~~-~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~--~~~~~~~~di~~~s~~K~l~g~-~g~G~  211 (401)
                      +.. +....|.+.+    ++++.++|++  +|+++|+||++.....   .  ++.....+|+++++  |.++++ .++|.
T Consensus       229 ~EP~iqg~gG~~~~~~~fl~~lr~lc~~--~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~~g--K~l~gG~~Pi~a  304 (460)
T PRK06916        229 VEPLVQGAGGMITMPKGYLKGLRNLCTK--YNVLFITDEVATGFGRTGKMFACEHENVTPDIMTAG--KGLTGGYLPIAI  304 (460)
T ss_pred             EeccccCCCCcccCCHHHHHHHHHHHHH--cCCEEEeechhhCCCcCchhhHHHhcCCCCCeeeee--hhhhcCccccce
Confidence            998 5777787764    7889999999  9999999999763211   1  11223347888775  999777 37899


Q ss_pred             EEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 015729          212 VCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA  291 (401)
Q Consensus       212 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~  291 (401)
                      +.+++++.+.+.......         ..+..+.  +++.++..+++..++++.+.+++   ..++..++.+++++.|++
T Consensus       305 v~~~~ei~~~~~~~~~~~---------~~~~~~~--T~~gnpl~~aaa~a~l~~l~~~~---l~~~~~~~g~~l~~~l~~  370 (460)
T PRK06916        305 TVTTDEIYNAFYGDYEEQ---------KTFFHGH--SYTGNPLGCAVALANLELYEKTN---LIEQVARKTEYVATQLED  370 (460)
T ss_pred             eeecHHHHHHhhcccccc---------CccccCC--CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHH
Confidence            999999877664211000         0011121  33456777888899999887754   667888888999999988


Q ss_pred             c-CCccccCCCccCCceeEEEEcCCCC--------C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHH
Q 015729          292 W-GLKNCTQKEEWFSDTVTAVIVPSHI--------N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQL  359 (401)
Q Consensus       292 ~-g~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di  359 (401)
                      + ......  +....+.++.+++.+..        +   ...+.+.++++ ||.+.+.     ++.+|+.+...+|++|+
T Consensus       371 l~~~~~v~--~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~-Gvl~~~~-----g~~l~~~Ppl~it~~~i  442 (460)
T PRK06916        371 LFALKHVG--DIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSREL-GMLTRPL-----GNTIVFMPPLASTIDEL  442 (460)
T ss_pred             hhcCCCeE--EeecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHC-CeEEEec-----CCEEEEeCCcccCHHHH
Confidence            6 332222  12234556666662210        0   23677777766 9988642     46899987888999999


Q ss_pred             HHHHHHHHHHHHhc
Q 015729          360 LGCLAGVEMILKDV  373 (401)
Q Consensus       360 ~~~~~~i~~~l~~~  373 (401)
                      |+++++++++++++
T Consensus       443 d~~~~~l~~~l~~~  456 (460)
T PRK06916        443 DEMLRILYKAISDV  456 (460)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999999764

>PRK07481 hypothetical protein; Provisional

Probab=99.82  E-value=2.2e-17  Score=159.11  Aligned_cols=308  Identities=15%  Similarity=0.124  Sum_probs=198.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--C-----CC-CCeEEEEcCCcchHHHHHHHHH--------
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--L-----SP-GDRIISFLIGQFSLLWIDQQQR--------  105 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~-----~~-gd~vl~~~~~~~~~~~~~~~~~--------  105 (401)
                      +...++.++|.++++...-+.+.|+++|++|++.++...  .     ++ ..+|+....+||+.....+.-.        
T Consensus        86 ~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~  165 (449)
T PRK07481         86 PRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRN  165 (449)
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccc
Confidence            455678888888774322345999999999999988431  1     12 3578999988888653222110        


Q ss_pred             cC---CcEEEEeCCCCC--C---CChHH--------HHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHhhh
Q 015729          106 LN---FNVDVVESDWGE--G---AKLDV--------LASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDE  165 (401)
Q Consensus       106 ~g---~~~~~v~~~~~~--~---~d~~~--------le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~  165 (401)
                      .+   ..+..++.+...  .   -|++.        +|+.+.....+++.+|++...+...|.+.+    ++++.++|++
T Consensus       166 ~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~  245 (449)
T PRK07481        166 YEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDR  245 (449)
T ss_pred             cCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHH
Confidence            00   112223222110  0   13333        344443222257899999998888888765    7889999999


Q ss_pred             cCCCcEEEEecccccCcc---e--eccCcccceEEEecCCCcccCC-CcceEEEecHHHHHHhccCCCCccccchHHHHH
Q 015729          166 YRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYIK  239 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~~---~--~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (401)
                        +|+++|.||++.....   .  +......+|+++++  |.++++ .++|.+++++++.+.+.......         .
T Consensus       246 --~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~~~~~~~~~~~---------~  312 (449)
T PRK07481        246 --HGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCLA--KGITSGYVPLGATMVNARIADAFEANADFG---------G  312 (449)
T ss_pred             --cCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEEe--ecccCCCcCceEEEEcHHHHHHHhccCccc---------c
Confidence              9999999999763321   1  12223347888886  999776 36899999999887765321000         0


Q ss_pred             HhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcCCC-
Q 015729          240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSH-  316 (401)
Q Consensus       240 ~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~-  316 (401)
                      .+..+.  +++.++..+++..++++.+.++   +..++..+..+++.+.|+++  ...+...  ....+.++.+++... 
T Consensus       313 ~~~h~~--T~~gnpl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~--vrG~Glm~gi~l~~~~  385 (449)
T PRK07481        313 AIMHGY--TYSGHPVACAAALATLDIVVRE---DLPANAAKRGAYLLEGLQPLKERFELVGD--VRGKGLMLALDLVADK  385 (449)
T ss_pred             ccccCC--CCCCCHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHhhcCCCeEE--EeecceEEEEEecccc
Confidence            011121  3345667778888899988765   46777888888888888875  3443321  123456677776211 


Q ss_pred             -----CC-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          317 -----IN-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       317 -----~~-----~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                           .+     ...+...|.++ ||.+.+.     +..+|+++...+|++|+|+++++++++++++..
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~-----g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~  448 (449)
T PRK07481        386 ATREPIDPSKGYANAVADVAREN-GVLVRPS-----GTKIILSPPLVIQREDVDRIVDALDAGLSAVPF  448 (449)
T ss_pred             cccCCCCchhHHHHHHHHHHHhC-CeEEEec-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhccC
Confidence                 01     23566677766 9988643     346899887788999999999999999987643

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.82  E-value=8.8e-18  Score=155.97  Aligned_cols=339  Identities=17%  Similarity=0.137  Sum_probs=228.9

Q ss_pred             CCCcccccCC------CcCChHHHHHHHccCcCC--CC--CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHH
Q 015729            7 PGKNHLFVPG------PVHIPDQVIRAMNRNNED--YR--SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA   76 (401)
Q Consensus         7 ~~~~~~~~~~------p~~~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~   76 (401)
                      -|+-|+++-+      -..-.+++.+|+.++...  |.  .........+|.++|+++....+=+.+.|++||++|++.+
T Consensus        42 ~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~Pa~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtA  121 (449)
T COG0161          42 DGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETA  121 (449)
T ss_pred             CCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhcccCCchHHHHHHHHHHhCCCCCccEEEEeCCchHHHHHH
Confidence            3455555443      244557777777775432  11  1111122668999999998743234599999999999998


Q ss_pred             HhccC-------CCC-CeEEEEcCCcchHHHHHHHH------H---cC---CcEEEEeCCCC--------CC----CChH
Q 015729           77 LTNTL-------SPG-DRIISFLIGQFSLLWIDQQQ------R---LN---FNVDVVESDWG--------EG----AKLD  124 (401)
Q Consensus        77 ~~~~~-------~~g-d~vl~~~~~~~~~~~~~~~~------~---~g---~~~~~v~~~~~--------~~----~d~~  124 (401)
                      +.-.+       +|. .+++....+||+..+..+.-      +   .+   ..+..++.+..        +.    -..+
T Consensus       122 lKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~  201 (449)
T COG0161         122 LKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAAD  201 (449)
T ss_pred             HHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHH
Confidence            84321       343 34888888999876422111      0   11   12334443331        11    1256


Q ss_pred             HHHHHHhccCCCCceEEEEEecCCC-cccccc----hHHHHHHhhhcCCCcEEEEecccccCcc---eeccCc--ccceE
Q 015729          125 VLASKLAADTAHTIKAICIVHNETA-TGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---DFRMDE--WGIDV  194 (401)
Q Consensus       125 ~le~~~~~~~~~~~~~i~~~~~~n~-tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~~~~~~--~~~di  194 (401)
                      +||+++.+...+++.++++...... .|+++|    ++++.++|++  ||+++|.||+-..+..   .|..+.  ..+|+
T Consensus       202 ~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~k--y~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi  279 (449)
T COG0161         202 ELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDK--YGILLIADEVATGFGRTGKMFACEHAGIVPDI  279 (449)
T ss_pred             HHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHH--cCcEEEeecceeCCCcCchhhhhhhcCCCCCe
Confidence            7888888765568999999988766 888875    7899999999  9999999998653321   222222  34788


Q ss_pred             EEecCCCcccCC-CcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHH
Q 015729          195 ALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLEN  273 (401)
Q Consensus       195 ~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~  273 (401)
                      ++.+  |.+.++ .++|.+++++++.+.+.....           +.|.-|+  +++-++..+++..+.|+.+.+++   
T Consensus       280 ~~~a--KGLT~GY~Pl~a~l~~~~I~~~~~~~~~-----------~~f~HG~--TYsghPlacAaAla~L~i~e~e~---  341 (449)
T COG0161         280 LCLA--KGLTGGYLPLSAVLTSDRIYEAFSDGDA-----------GAFMHGH--TYSGNPLACAAALANLDILEEED---  341 (449)
T ss_pred             eeec--ccccccchhhHhHhhhHHHHHHHhcccC-----------CeeccCC--ccccCHHHHHHHHHHHHHHHhcC---
Confidence            8877  888655 478999999999988875421           1122243  66777888899999999998875   


Q ss_pred             HHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCceeEEEEcCCCCC---------HHHHHHHHHhhCCeEEccCCCCCC
Q 015729          274 VIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVIVPSHIN---------SSEIVRRAWQRYNLSLGLGLNKVA  342 (401)
Q Consensus       274 ~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~L~~~~~i~v~~g~~~~~  342 (401)
                      +.++.++...++.+.|++ + +.+.+..  ....+.+..+++-....         ...+.+.+.++ |+.++|.     
T Consensus       342 l~~~~~~~~~~l~~~L~~~l~~~p~Vgd--VR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~-Gl~iRp~-----  413 (449)
T COG0161         342 LLERVAEIGAYLQAGLQAALADHPLVGD--VRGLGLIGAIELVADKATKTPFEARVGARVRAAALER-GLLIRPL-----  413 (449)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCcEEE--eeccceEEEEEEecccccccchhhhHHHHHHHHHHHC-CeEEeec-----
Confidence            677777888899999987 3 4444432  23456777778732222         34677777777 9999976     


Q ss_pred             CcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          343 GKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       343 ~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ++.+-+++...+|++|+|++++++++++++.
T Consensus       414 g~~i~~~PPliit~~eid~l~~~l~~al~~~  444 (449)
T COG0161         414 GDVIYLMPPLIITREEIDELVDALREALDET  444 (449)
T ss_pred             CCEEEEcCCccCCHHHHHHHHHHHHHHHHHH
Confidence            5588888877899999999999999999864

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.82  E-value=2.1e-17  Score=159.34  Aligned_cols=324  Identities=18%  Similarity=0.109  Sum_probs=206.2

Q ss_pred             CChHHHHHHHccCcC----CCCCccHHHHHHHHHHHHHHHhcCCCC--ceEEec-CChhHHHHHHHhc--cCCCCCeEEE
Q 015729           19 HIPDQVIRAMNRNNE----DYRSPAVPALTKTLLEDIKKIFKTTSG--TPFLIP-TTGTGAWESALTN--TLSPGDRIIS   89 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~g~~~~--~~i~~~-~g~t~a~~~~~~~--~~~~gd~vl~   89 (401)
                      .-+|.|.++++++..    .+......+...++-+++.+.....-.  ..+.++ ++|++|++.+++-  ......+|+.
T Consensus        79 h~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~  158 (464)
T PRK06938         79 HNHPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLS  158 (464)
T ss_pred             CCCHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEE
Confidence            334566666665432    111111234444666777766542211  246565 7999999998843  2334468888


Q ss_pred             EcCCcchHHHHHHHHHc--------C---CcEEEEeCCCCCC------------CChHHHHHHHhccC--CCCceEEEEE
Q 015729           90 FLIGQFSLLWIDQQQRL--------N---FNVDVVESDWGEG------------AKLDVLASKLAADT--AHTIKAICIV  144 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~--------g---~~~~~v~~~~~~~------------~d~~~le~~~~~~~--~~~~~~i~~~  144 (401)
                      ...+||+.....+....        +   -.+..++.+...+            .+.+.+++.+.+..  .+++.+|++.
T Consensus       159 ~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~E  238 (464)
T PRK06938        159 FQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILE  238 (464)
T ss_pred             ECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEc
Confidence            88888887633222110        0   1233444432211            12567888886421  1358899999


Q ss_pred             ecCCCcccccc----hHHHHHHhhhcCCCcEEEEecccccCcc---ee--ccCcccceEEEecCCCcccCCCcceEEEec
Q 015729          145 HNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---DF--RMDEWGIDVALTGSQKALSLPTGMGIVCAS  215 (401)
Q Consensus       145 ~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~~--~~~~~~~di~~~s~~K~l~g~~g~G~l~~~  215 (401)
                      ......|.+.+    ++++.++|++  +|+++|.||++.....   .+  +.....+|+++++  |.++++.++|.++.+
T Consensus       239 Piqg~gG~~~p~~~yl~~lr~lc~~--~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~g--KglggG~PlsAv~~~  314 (464)
T PRK06938        239 VVQGEGGVIPAPIEWLRGLRRITEE--AGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLS--KAIGGSLPLAVVVYR  314 (464)
T ss_pred             cccCCCCCcCCCHHHHHHHHHHHHH--cCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEee--ccccCCCceEEEeeh
Confidence            88887888765    7889999999  9999999999763321   11  2223347998886  999877788999988


Q ss_pred             HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--C
Q 015729          216 PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--G  293 (401)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g  293 (401)
                      ++. +.+...     .           .++  +++.++..+++..++++.+.++   +..++..++.+++.+.|+++  .
T Consensus       315 ~~~-~~~~~~-----~-----------~~~--T~~gnpla~Aaa~a~L~~l~~~---~l~~~~~~~G~~l~~~L~~l~~~  372 (464)
T PRK06938        315 EWL-DTWQPG-----A-----------HAG--TFRGNQMAMAAGSATLRYIKEH---RLAEHAAAMGERLREHLRQLQRD  372 (464)
T ss_pred             hHh-hccCCC-----C-----------CCC--CCCcCHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHh
Confidence            774 433211     0           011  3446667788889999988765   46777888888888888875  3


Q ss_pred             CccccCCCccCCceeEEEEcCCC--C---------C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHH
Q 015729          294 LKNCTQKEEWFSDTVTAVIVPSH--I---------N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQL  359 (401)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~--~---------~---~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di  359 (401)
                      .++...  ....+.++.+++.+.  .         +   ...+...|.++ |+.+.++..  .++.+|+.+...+|++|+
T Consensus       373 ~~~i~~--VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~g~--~~~~l~~~Ppl~it~~ei  447 (464)
T PRK06938        373 YPQLGD--VRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRR-GLILELGGR--HGSVVRFLPPLIITAEQI  447 (464)
T ss_pred             CCCeee--eeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHC-CeEEeecCC--CCCEEEEECCCccCHHHH
Confidence            443321  224556777777321  0         1   23566777766 998865421  257899988888999999


Q ss_pred             HHHHHHHHHHHHhc
Q 015729          360 LGCLAGVEMILKDV  373 (401)
Q Consensus       360 ~~~~~~i~~~l~~~  373 (401)
                      |+++++++++++++
T Consensus       448 d~~~~~l~~~l~~~  461 (464)
T PRK06938        448 DEVAEIFAEAVAAA  461 (464)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999764

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.82  E-value=3.7e-17  Score=157.66  Aligned_cols=318  Identities=15%  Similarity=0.108  Sum_probs=205.2

Q ss_pred             ChHHHHHHHccCcCC--CC-CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCc
Q 015729           20 IPDQVIRAMNRNNED--YR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQ   94 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~   94 (401)
                      -+|+|.+++.++...  +. .....+...++.++|+++++... +.+.|++||++|++.++.-  ......+|+....+|
T Consensus        88 ~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~y  166 (459)
T PRK06082         88 GHPHVIEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGGEL-NRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSF  166 (459)
T ss_pred             CCHHHHHHHHHHHHhCCCccCccCCHHHHHHHHHHHHhCCCCC-CEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            445566555554321  11 11224556788888988875322 3599999999999998743  233447899998888


Q ss_pred             chHHHHHHHHHcCC------------cEEEEeCCCCCC--C---------ChHHHHHHHhccCCCCceEEEEEecCCCcc
Q 015729           95 FSLLWIDQQQRLNF------------NVDVVESDWGEG--A---------KLDVLASKLAADTAHTIKAICIVHNETATG  151 (401)
Q Consensus        95 ~~~~~~~~~~~~g~------------~~~~v~~~~~~~--~---------d~~~le~~~~~~~~~~~~~i~~~~~~n~tG  151 (401)
                      |+.....+.- .+.            .+..++.....+  .         +++.+++.+++.  +++.+|++..+.+..+
T Consensus       167 HG~t~~a~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~vAavIvEPv~g~g~  243 (459)
T PRK06082        167 HGASLDAISV-GGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKE--GGIGAFIAEAVRNTDV  243 (459)
T ss_pred             cCccHHHHhh-cCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcC--CCEEEEEECCccCCCC
Confidence            8876322211 111            123333211100  1         135577777642  3678888888876533


Q ss_pred             cccc---hHHHHHHhhhcCCCcEEEEecccccCcce---e--ccCcccceEEEecCCCcccCCC-cceEEEecHHHHHHh
Q 015729          152 VTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID---F--RMDEWGIDVALTGSQKALSLPT-GMGIVCASPKALEAS  222 (401)
Q Consensus       152 ~~~~---l~~i~~l~~~~~~~~~li~D~a~~~~~~~---~--~~~~~~~di~~~s~~K~l~g~~-g~G~l~~~~~~~~~~  222 (401)
                      .+.|   ++++.++|++  +|+++|+||++......   +  +.....+|+++++  |.++++. ++|.+++++++....
T Consensus       244 ~~~~~~yl~~lr~lc~~--~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~~g--Kgl~gG~~P~~av~~~~~i~~~~  319 (459)
T PRK06082        244 QVPSKAYWKRVREICDK--HNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILCIG--KGLGGGLVPIAAMITKDKYNTAA  319 (459)
T ss_pred             cCCCHHHHHHHHHHHHH--cCCEEEEechhhCCCccchhhHhHhhCCCCCEEEec--ccccCCCCcceEEEEcHHHHhhc
Confidence            3445   7899999999  99999999998743211   1  1122347888864  9997763 689999988865432


Q ss_pred             ccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCC
Q 015729          223 KTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQK  300 (401)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~  300 (401)
                      ...               +  .+ ++++.++..+++..++++.+.+++   ..++..++.+++++.|+++  .+.+... 
T Consensus       320 ~~~---------------~--~~-~T~~gnpl~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~i~~-  377 (459)
T PRK06082        320 QIS---------------L--GH-YTHEKSPLGCAAALATIEVIEQEG---LLEKVKADSQFMRERLLEMKAKYPLIGD-  377 (459)
T ss_pred             cCC---------------C--CC-CCCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHhhCCCeee-
Confidence            110               0  11 234466777888889999887653   7788888999999999875  3443321 


Q ss_pred             CccCCceeEEEEcCCCC-----C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          301 EEWFSDTVTAVIVPSHI-----N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       301 ~~~~~~~~~~~~~~~~~-----~---~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                       ....+.++.+++.+..     +   ...+...+.++ ||.+.+.    .++.+|+++...+|++|+|++++++++++.+
T Consensus       378 -vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~----~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~  451 (459)
T PRK06082        378 -VRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNN-GLSFKVS----QGNVIQLSPPLIITREELTQALAILEEAIAK  451 (459)
T ss_pred             -eeeccceeEEEEccCccccCccHHHHHHHHHHHHhC-CCEEEec----CCCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence             2235567777773211     1   33566667766 9887642    2578999888889999999999999999987


Q ss_pred             c
Q 015729          373 V  373 (401)
Q Consensus       373 ~  373 (401)
                      +
T Consensus       452 ~  452 (459)
T PRK06082        452 I  452 (459)
T ss_pred             H
Confidence            5

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.82  E-value=1.2e-17  Score=160.39  Aligned_cols=318  Identities=15%  Similarity=0.089  Sum_probs=200.5

Q ss_pred             cCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--CCCCCeEEEEc
Q 015729           14 VPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFL   91 (401)
Q Consensus        14 ~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~~~gd~vl~~~   91 (401)
                      +.++..+.+++.+.+.+..  +. ....+...++.+++.+.+..  ...+.++++|++|++.++...  ...+++|+..+
T Consensus        65 Gh~~p~i~~a~~~~~~~~~--~~-~~~~~~~~~la~~L~~~~~~--~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~  139 (426)
T PRK00062         65 GHAHPEVVEAVIEAAEKGL--SF-GAPTELEVELAELVIELVPS--IEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFE  139 (426)
T ss_pred             CCCCHHHHHHHHHHHHhCC--cC-CCCCHHHHHHHHHHHHhCCC--CCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEc
Confidence            3344444444445554421  11 12334556888888887632  235899999999999988653  33467899999


Q ss_pred             CCcchHHHHHHHH-H-----cC-----CcEE-----EEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc
Q 015729           92 IGQFSLLWIDQQQ-R-----LN-----FNVD-----VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN  155 (401)
Q Consensus        92 ~~~~~~~~~~~~~-~-----~g-----~~~~-----~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~  155 (401)
                      ++||+........ .     .+     ...+     .+..+.   -|++++++.+.+.. +++++|++....+.+|.+.+
T Consensus       140 ~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~l~~~i~~~~-~~~aaiivEpv~~~~G~~~~  215 (426)
T PRK00062        140 GCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPY---NDLEAVEELFEEYG-DEIAAVIVEPVAGNMGVVPP  215 (426)
T ss_pred             CccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCC---CCHHHHHHHHHhCC-CcEEEEEEeCCcCCCCCcCC
Confidence            9999875211111 0     01     0000     111111   27899999886533 47889999988888999987


Q ss_pred             ----hHHHHHHhhhcCCCcEEEEecccccCcc--ee--ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCC
Q 015729          156 ----LSKVRKLLDEYRHPALFLVDGVSSICAI--DF--RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS  227 (401)
Q Consensus       156 ----l~~i~~l~~~~~~~~~li~D~a~~~~~~--~~--~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~  227 (401)
                          +++|.++|++  ||+++|+|++|.....  .+  +.....+|++  +.+|.++++.++|++++++++.+.+.....
T Consensus       216 ~~~~l~~l~~l~~~--~~~llI~DEv~~G~r~g~~~~~~~~~~~pDi~--~~gK~l~~G~p~ga~~~~~~i~~~~~~~~~  291 (426)
T PRK00062        216 KPGFLEGLRELCDE--HGALLIFDEVMTGFRVALGGAQGYYGVTPDLT--TLGKIIGGGLPVGAFGGRREIMEQLAPLGP  291 (426)
T ss_pred             CHHHHHHHHHHHHH--cCCEEEEeechhccccCCccHHHHhCCCcchH--hhhhHhhCCCcceeeeEHHHHHHhhccCCC
Confidence                8999999999  9999999999873211  11  1111235654  445999766557899999988887743210


Q ss_pred             CccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc----CCccccCCCcc
Q 015729          228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEW  303 (401)
Q Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~  303 (401)
                        .+             .+..++.++..++++.++++.+.++   +..++..++.+++++.|+++    ++.....    
T Consensus       292 --~~-------------~~~T~~~~p~~~aaa~a~L~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vr----  349 (426)
T PRK00062        292 --VY-------------QAGTLSGNPLAMAAGLATLKLLKEP---GFYEELEALTKRLAEGLKEAAKKAGIPLTVN----  349 (426)
T ss_pred             --ce-------------ecccCcCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHcCCceEEE----
Confidence              00             0112346666678888888887664   36666777777777777653    4332111    


Q ss_pred             CCceeEEEEcCCC-C---------C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          304 FSDTVTAVIVPSH-I---------N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       304 ~~~~~~~~~~~~~-~---------~---~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      ..+.++.+.+.+. .         +   +..+.+.|.++ ||.+.+...    +.+++.  ..+|++|++++++++++++
T Consensus       350 g~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~-Gv~v~~~~~----~~~~~~--~~~t~~ei~~~~~~l~~~l  422 (426)
T PRK00062        350 RVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDE-GVYLAPSQF----EAGFVS--AAHTDEDIEKTLEAARKAF  422 (426)
T ss_pred             EecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHC-CeEeecCCc----Cceeee--ccCCHHHHHHHHHHHHHHH
Confidence            2344566665321 1         1   24688888766 999876421    345664  4689999999999999998


Q ss_pred             Hhc
Q 015729          371 KDV  373 (401)
Q Consensus       371 ~~~  373 (401)
                      +++
T Consensus       423 ~~~  425 (426)
T PRK00062        423 AAL  425 (426)
T ss_pred             Hhh
Confidence            764

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.81  E-value=2.1e-17  Score=157.88  Aligned_cols=293  Identities=11%  Similarity=0.048  Sum_probs=190.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcchHH---HHHHHHHcCC---cE-E-
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQFSLL---WIDQQQRLNF---NV-D-  111 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~---~~~~~~~~g~---~~-~-  111 (401)
                      +...++-++|.+.++... +.+.|+++|++|++.++..  ......+|+....+||+..   +..+.. .+-   .. . 
T Consensus        93 ~~~~~la~~L~~~~~~~~-~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~-~~~~~~~~~~~  170 (433)
T PRK00615         93 EQEILFAEELFSYLGLED-HKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISF-SETSLDTLTHL  170 (433)
T ss_pred             HHHHHHHHHHHHhCCCCc-CEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCccccc-CCCCcCcCCCC
Confidence            445677788887775432 3599999999999998843  2333467888888888854   211111 010   00 0 


Q ss_pred             ---------EEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHhhhcCCCcEEEEeccc
Q 015729          112 ---------VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVS  178 (401)
Q Consensus       112 ---------~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~  178 (401)
                               .+....   -|++++++.+.+.. +++.+|++....+..|...|    +++|.++|++  +|+++|+|++|
T Consensus       171 ~~~~~~~~~~~~~~~---~d~~~l~~~l~~~~-~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~--~g~llI~DEv~  244 (433)
T PRK00615        171 VDTDLAHPLTLSLPY---NDFQIFQTVMNSLG-HRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRR--TGSLSIMDEVV  244 (433)
T ss_pred             CCCCCCCCCeEeCCC---CCHHHHHHHHHhcC-CceEEEEECCCCCCCCcccCCHHHHHHHHHHHHH--cCCEEEEEccc
Confidence                     010111   16889999887544 46789999988888898887    4589999999  99999999998


Q ss_pred             ccC-c-cee--ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHH
Q 015729          179 SIC-A-IDF--RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQ  254 (401)
Q Consensus       179 ~~~-~-~~~--~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  254 (401)
                      ... . ..+  ......+|++++  .|.++++.++|.+++++++.+.+....  ..+.           +  .+++.++.
T Consensus       245 tG~R~G~~ga~~~~gv~PDi~~~--gK~lggG~p~~av~~~~~i~~~~~~~~--~~~~-----------~--~T~~g~p~  307 (433)
T PRK00615        245 TGFRVAQGGAAAIYHVKPDITVY--GKILGGGLPAAAVVAHKSIMDHLAPEG--TIFQ-----------A--GTLSGNPL  307 (433)
T ss_pred             ccccccHhHHHHhcCCCCCeEEE--cccccCCcceeeeeecHHHHhhhcCCC--Cccc-----------C--CCCcccHH
Confidence            522 1 011  111234788775  599976666799999999887764310  0000           1  13345677


Q ss_pred             HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCCceeEEEEcCCCC----------C--
Q 015729          255 LLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFSDTVTAVIVPSHI----------N--  318 (401)
Q Consensus       255 ~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~----------~--  318 (401)
                      .+++..++++.+.+++   ..++..++.+++++.|+++    |+++...    +.+.++.+.+.+..          +  
T Consensus       308 ~~aa~la~L~~i~~~~---~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~----r~G~~~~i~~~~~~~~~~~~~~~~~~~  380 (433)
T PRK00615        308 AMAAGKASINLCREQG---FYTQLSTLEQNFLSPIEEMIRSQGFPVSLV----RYGSMFSFFFNENRPNNLAEAQLSDIE  380 (433)
T ss_pred             HHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHcCCCeEEE----eeceEEEEEEeCCCCCChHHHhhCCHH
Confidence            7888999999887653   5666777777776666653    5553221    24556667763211          0  


Q ss_pred             -HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          319 -SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       319 -~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                       ...+.+.|.++ ||.+.+...+.  .    .+...+|++|||+++++++++++++
T Consensus       381 ~~~~~~~~l~~~-Gv~~~~~~~~~--~----~ls~~ht~~did~~~~a~~~~~~~~  429 (433)
T PRK00615        381 AFQTFYQSAFSK-GVYLSPSPFEA--S----FLSSAHSMENLDYAQNVLIDSLEKV  429 (433)
T ss_pred             HHHHHHHHHHHC-CeeecCccccc--c----ceecCCCHHHHHHHHHHHHHHHHHH
Confidence             12577777766 99987654321  1    2344579999999999999999764

>PRK07036 hypothetical protein; Provisional

Probab=99.81  E-value=4.7e-17  Score=157.24  Aligned_cols=304  Identities=16%  Similarity=0.129  Sum_probs=198.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--C----C-C-CCeEEEEcCCcchHHHHHHHHHcC------
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--L----S-P-GDRIISFLIGQFSLLWIDQQQRLN------  107 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~----~-~-gd~vl~~~~~~~~~~~~~~~~~~g------  107 (401)
                      +...++.++|.+...... ..+.|++||++|++.++...  .    . + ..+|+....+||+..+..+.- .+      
T Consensus        95 ~~~~~lae~L~~~~p~~~-~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~-~~~~~~~~  172 (466)
T PRK07036         95 APAAELAAKLAELAPGDL-NHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASL-TGKAADRT  172 (466)
T ss_pred             HHHHHHHHHHHHhCCCCc-CEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcc-cCCCcccc
Confidence            445677788877764322 35999999999999988431  1    1 2 357888888888866332211 11      


Q ss_pred             ------CcEEEEeCCCC----CCC--------ChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHhhh
Q 015729          108 ------FNVDVVESDWG----EGA--------KLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDE  165 (401)
Q Consensus       108 ------~~~~~v~~~~~----~~~--------d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~  165 (401)
                            ..+..++.+..    ...        ..+.+++.+.....+++.+|++.......|...+    ++++.++|++
T Consensus       173 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~  252 (466)
T PRK07036        173 EFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRR  252 (466)
T ss_pred             cccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHH
Confidence                  11233332211    011        1244566665432257899999998888898876    8899999999


Q ss_pred             cCCCcEEEEecccccC-cc--eeccC---cccceEEEecCCCcccCC-CcceEEEecHHHHHHhccCCCCccccchHHHH
Q 015729          166 YRHPALFLVDGVSSIC-AI--DFRMD---EWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYI  238 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~-~~--~~~~~---~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (401)
                        +|+++|+||++... -.  .+..+   ...+|+++++  |.++++ .++|.+++++++.+.+........        
T Consensus       253 --~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt~g--K~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~--------  320 (466)
T PRK07036        253 --YDILYISDEVVTGFGRLGHFFASEAVFGIQPDIITFA--KGLTSGYQPLGAVIISERLLDVISGPNAKGN--------  320 (466)
T ss_pred             --cCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEEEc--cccccCccccEEEEEcHHHHHHHhcccCcCc--------
Confidence              99999999998533 21  12222   2347888876  999776 368999999999887653211000        


Q ss_pred             HHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCC-
Q 015729          239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSH-  316 (401)
Q Consensus       239 ~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-  316 (401)
                       .+..++  +++.++..+++..++++.+.+++   ..++..+..++|++.|+++ ......  .....+.++.+++.+. 
T Consensus       321 -~~~~~~--T~~gnpl~~aaa~a~Le~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~v~--~vrG~Gl~~~ve~~~~~  392 (466)
T PRK07036        321 -VFTHGF--TYSGHPVACAAALKNIEIMEREG---LCEHVREVGPYFEERLASLRELPLVG--DVRGDHLMACVECVADK  392 (466)
T ss_pred             -ccccCC--CCCCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHhccCCCEE--EEEeeceEEEEEEccCc
Confidence             011122  33456677888899999887654   7777888888888888775 333222  1224556777777321 


Q ss_pred             C-------C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          317 I-------N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       317 ~-------~---~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .       +   ...+...|+++ ||.+.+.     ++.+|+++...+|++|+|+++++++++++++
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~-----~~~~~l~Ppl~it~~~id~~~~~l~~al~~~  453 (466)
T PRK07036        393 GSKALLPEDIAIGQRIDRHCQER-GLLVRPL-----EHLCVLSPPLIITRAQIDEIVAILRAAIEET  453 (466)
T ss_pred             cccCCCCchhHHHHHHHHHHHHC-CcEEeec-----CCEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence            0       1   23566777766 9888642     3578998777889999999999999988764

>PRK12403 putative aminotransferase; Provisional

Probab=99.81  E-value=7.1e-17  Score=155.89  Aligned_cols=323  Identities=13%  Similarity=0.051  Sum_probs=201.5

Q ss_pred             ChHHHHHHHccCcCC--CC--C-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC-------CCCC-e
Q 015729           20 IPDQVIRAMNRNNED--YR--S-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SPGD-R   86 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~~--~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~-------~~gd-~   86 (401)
                      -+|++.+++.++...  +.  . ....+...++.++|+++++... +.++++++|++|++.++....       ++++ .
T Consensus        71 ~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~  149 (460)
T PRK12403         71 GRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGHY-SHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKI  149 (460)
T ss_pred             CCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCc-CEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcE
Confidence            345666666554322  11  1 1123556688888888876432 358999999999999885431       2333 3


Q ss_pred             EEEEcCCcchHHHHHHHHHcCC-----------cEEEEeCCCC----CCC--------ChHHHHHHHhccCCCCceEEEE
Q 015729           87 IISFLIGQFSLLWIDQQQRLNF-----------NVDVVESDWG----EGA--------KLDVLASKLAADTAHTIKAICI  143 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~~----~~~--------d~~~le~~~~~~~~~~~~~i~~  143 (401)
                      |+....+||+.....+. ..+.           .+..++.+..    +..        +.+.+++.+.+...+++.+|++
T Consensus       150 ii~~~~~yHG~t~~~~s-~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~  228 (460)
T PRK12403        150 MIGRWNGYHGSTLAATA-LGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVA  228 (460)
T ss_pred             EEEECCCcCcccHhhhh-cCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence            45556677776532221 1121           1233332211    001        1355666664322246889999


Q ss_pred             EecCCCcccccc----hHHHHHHhhhcCCCcEEEEecccccCcc---ee--ccCcccceEEEecCCCcccCCC-cceEEE
Q 015729          144 VHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---DF--RMDEWGIDVALTGSQKALSLPT-GMGIVC  213 (401)
Q Consensus       144 ~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~~--~~~~~~~di~~~s~~K~l~g~~-g~G~l~  213 (401)
                      ....+..|.+.+    ++++.++|++  +|+++|+||++.....   .+  +.....+|+++++  |.++++. ++|.++
T Consensus       229 Epv~g~gG~~~~~~~yl~~lr~lc~~--~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~g--K~lggG~~Piga~v  304 (460)
T PRK12403        229 EPFQGAGGMIFPPESYWPEIQRICRQ--YDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLSIA--KGLTSGYVPMGGLV  304 (460)
T ss_pred             ccccCCCCCccCCHHHHHHHHHHHHH--cCCEEEEeccccCCCcCchhhhhhhcCCCCCeEEEc--ccccccccceEEEE
Confidence            988888898887    8999999999  9999999999863311   11  2122347888765  9998774 688888


Q ss_pred             ecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHH-HHHHHHHHHHHHc
Q 015729          214 ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHR-RLGKATRLAVEAW  292 (401)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~-~~~~~l~~~L~~~  292 (401)
                      +++++.+.+.... ..           +..++  +++.++..+++..++|+.+.+++   ..++.. ++.+++++.|+++
T Consensus       305 ~~~~i~~~~~~~~-~~-----------~~~~~--T~~gnPl~~Aaala~L~~i~~~~---l~~~~~~~~g~~l~~~L~~l  367 (460)
T PRK12403        305 LSKRIAEALVEQG-GV-----------FAHGL--TYSGHPVAAAVAIANLKALRDEG---VVTRVKDDTGPYLQRCLREV  367 (460)
T ss_pred             ECHHHHHHHhcCC-Cc-----------cccCC--CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHH
Confidence            9988877664211 00           00111  33466778889999999887754   566665 7788888888764


Q ss_pred             --CCccccCCCccCCceeEEEEcCCC-C-----C-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHH
Q 015729          293 --GLKNCTQKEEWFSDTVTAVIVPSH-I-----N-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQL  359 (401)
Q Consensus       293 --g~~~~~~~~~~~~~~~~~~~~~~~-~-----~-----~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di  359 (401)
                        ...+...  ....+.++.+++.+. .     .     ...+...+.++ |+.+.+.     ++.+|+++.-.+|++|+
T Consensus       368 ~~~~~~i~~--vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~-----~~~~~l~Ppl~it~~ei  439 (460)
T PRK12403        368 FGDHPLVGE--VQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEE-GVIIRST-----LGRMIMAPALVAGRAEI  439 (460)
T ss_pred             HhcCCCEEe--EeecceEEEEEEccCccccccccchhHHHHHHHHHHHhC-CEEEEec-----CCEEEEECCCCCCHHHH
Confidence              3443322  223556777776321 0     1     11233445555 9888632     34689988878899999


Q ss_pred             HHHHHHHHHHHHhc
Q 015729          360 LGCLAGVEMILKDV  373 (401)
Q Consensus       360 ~~~~~~i~~~l~~~  373 (401)
                      |+++++++++++++
T Consensus       440 d~~~~~l~~al~~~  453 (460)
T PRK12403        440 DELVDKTRIAVDRT  453 (460)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998765

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.81  E-value=2e-17  Score=154.46  Aligned_cols=275  Identities=12%  Similarity=0.098  Sum_probs=186.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcchHHHHHHHHH------cCC----
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQFSLLWIDQQQR------LNF----  108 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~------~g~----  108 (401)
                      .+...++.++++++.+.+   .++++++||+|++.++..  .....++|+....+||+.....+...      .+.    
T Consensus        65 ~~~~~~la~~l~~~~~~~---~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~  141 (364)
T PRK04013         65 HEEKEEMLEELSKWVNYE---YVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLV  141 (364)
T ss_pred             CHHHHHHHHHHHhhcCCC---EEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCC
Confidence            355678888888887543   489999999999998854  23333889999998888753322210      111    


Q ss_pred             -cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccccc-c---hHHHHHHhhhcCCCcEEEEecccccCcc
Q 015729          109 -NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN-N---LSKVRKLLDEYRHPALFLVDGVSSICAI  183 (401)
Q Consensus       109 -~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~-~---l~~i~~l~~~~~~~~~li~D~a~~~~~~  183 (401)
                       .+..++.+     |++.+++.+.    +++++|++.+.+...|... |   ++++.++|++  +|+++|.|++++..-.
T Consensus       142 ~~~~~~~~~-----d~~~l~~~i~----~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~--~gillI~DEv~tG~Rt  210 (364)
T PRK04013        142 PGFKHIPFN-----DVEAAKEAIT----KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTED--VGALLIADEVQSGLRT  210 (364)
T ss_pred             CCcEEecCC-----CHHHHHHHhc----CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHH--cCCEEEEechhhcCCC
Confidence             12222221     6888888886    3679999998888777766 4   8899999999  9999999999873210


Q ss_pred             --eec--cCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHH
Q 015729          184 --DFR--MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGL  259 (401)
Q Consensus       184 --~~~--~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~  259 (401)
                        .+.  .....+|+++++  |.++++.++|.++.+++.    ...                  .+..++..++..+++.
T Consensus       211 G~~~a~~~~gv~PDiv~~g--K~lggG~P~~a~~~~~~~----~~~------------------~~~~T~~gnp~~~aaa  266 (364)
T PRK04013        211 GKFLAIEHYKVEPDIVTMG--KGIGNGVPVSLTLTNFDV----ERG------------------KHGSTFGGNPLACKAV  266 (364)
T ss_pred             CchhHHHhcCCCCCEEEec--ccccCCceeEEEEecccc----cCC------------------CcCCCCCcCHHHHHHH
Confidence              111  123447888885  999877677888877664    110                  0112445677788889


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCC
Q 015729          260 RAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLN  339 (401)
Q Consensus       260 ~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~  339 (401)
                      .++++.+.++++...   ..+.       |+++.-+...  +....+.++.+++.+  +...+.+.++++ |+.+.+.  
T Consensus       267 ~a~l~~i~~~~l~~~---~~~~-------l~~l~~~~v~--~vRG~Gl~~gve~~~--~~~~i~~~~~~~-Gll~~~~--  329 (364)
T PRK04013        267 AVTLRILRRERLVEK---AGEK-------FIEIKGERVV--TTRGRGLMIGIVLKK--PVGKYVEELQNR-GYLVHTA--  329 (364)
T ss_pred             HHHHHHHHhccHHHH---HHHH-------HHHhccCcce--eeeeCcEEEEEEeCC--cHHHHHHHHHhC-CcEEeeC--
Confidence            999999988763222   2221       2222112221  122456778888832  356788888876 8887542  


Q ss_pred             CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          340 KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       340 ~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                        .++.+||.+...+|++|++++++++++++++
T Consensus       330 --g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~  360 (364)
T PRK04013        330 --GQRVIRLLPPLIISKDTMEEAKSAIEGVIND  360 (364)
T ss_pred             --CCCEEEEeCCcccCHHHHHHHHHHHHHHHHH
Confidence              2378999988899999999999999999875

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.81  E-value=3e-17  Score=161.93  Aligned_cols=309  Identities=11%  Similarity=0.055  Sum_probs=210.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC--
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--  118 (401)
                      ...+.+.++..|++||++..  .++++|+|.+|.+++.+.+++||+|++.-++|-|..- ......|++++++....+  
T Consensus       173 eG~i~eAq~~AA~~fgAd~t--yFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~h-gaLiLsGa~PVYl~P~~n~~  249 (720)
T PRK13578        173 EGAAKDAQKHAAKVFNADKT--YFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHH-GALIQAGATPVYLETARNPF  249 (720)
T ss_pred             ChHHHHHHHHHHHHhCCCce--EEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHH-HHHHHcCCeEEEeecccccc
Confidence            45588999999999999874  6789999999999999999999999999999888652 235668999999876542  


Q ss_pred             ---CCCCh-----HHHHHHHhccCCC-----C-ceEEEEEecCCCcccccchHHHHHH-hhhcCCCcEEEEecccccCcc
Q 015729          119 ---EGAKL-----DVLASKLAADTAH-----T-IKAICIVHNETATGVTNNLSKVRKL-LDEYRHPALFLVDGVSSICAI  183 (401)
Q Consensus       119 ---~~~d~-----~~le~~~~~~~~~-----~-~~~i~~~~~~n~tG~~~~l~~i~~l-~~~~~~~~~li~D~a~~~~~~  183 (401)
                         +.+++     +.+++++++++.+     + .++++++++ |.-|.++++++|+++ ++.  ++ +|++|+||+....
T Consensus       250 Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p-TYdG~~ydi~~I~~~~~h~--~~-~llvDEAhgah~~  325 (720)
T PRK13578        250 GFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLG-TYDGTIYNARQVVDKIGHL--CD-YILFDSAWVGYEQ  325 (720)
T ss_pred             CCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECC-CCcceeecHHHHHHHhhcc--CC-cEEEeCcchhhhc
Confidence               23454     4599999876212     2 478888875 568999999999998 677  77 9999999874321


Q ss_pred             --e----e--ccCcccce----EEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCC
Q 015729          184 --D----F--RMDEWGID----VALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP  251 (401)
Q Consensus       184 --~----~--~~~~~~~d----i~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  251 (401)
                        +    +  ...+.|+|    +++-|.||++.+....+++.++...++.      +.-+.+.......+..  +.+.+|
T Consensus       326 F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g------~~~~v~~~r~~~al~m--~qSTSP  397 (720)
T PRK13578        326 FIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKG------QARYCPHKRLNNAFML--HASTSP  397 (720)
T ss_pred             cCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCccccc------ccccCCHHHHHHHHHH--HcCCCh
Confidence              1    1  11245788    9999999999888887888876653210      0001222222222221  113467


Q ss_pred             cHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHH-HHc-CCccccCC---------------------------C
Q 015729          252 SIQLLYGLRAALDLIFE-EGLENVIERHRRLGKATRLAV-EAW-GLKNCTQK---------------------------E  301 (401)
Q Consensus       252 ~~~~~~a~~~al~~~~~-~g~~~~~~~~~~~~~~l~~~L-~~~-g~~~~~~~---------------------------~  301 (401)
                      +...++++..+...+.. .| +...++..+....+++.+ +.. +++++.++                           .
T Consensus       398 sY~LmASLDva~~~m~~~~G-~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~~~p~~  476 (720)
T PRK13578        398 FYPLFAALDVNAKMHEGESG-RRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSFEPGE  476 (720)
T ss_pred             HHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhcccccccccccCc
Confidence            77888888888777765 45 678888888888899888 444 66555211                           0


Q ss_pred             c------------cCCceeEEEEcCCCCC------------HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHH
Q 015729          302 E------------WFSDTVTAVIVPSHIN------------SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEL  357 (401)
Q Consensus       302 ~------------~~~~~~~~~~~~~~~~------------~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~  357 (401)
                      .            ...+.-+.+..| |++            +..+.+.|.++ ||.+.....    ..+-+-+....+++
T Consensus       477 ~whgf~~~~~~~~~lDP~KltI~t~-G~~~~~G~~~~~Gipg~~l~~~L~e~-gI~~E~~d~----~~vL~l~s~g~t~~  550 (720)
T PRK13578        477 KWHGFEGYAEDQYFVDPCKLLLTTP-GIDAETGEYEDFGIPATILANYLREN-GIVPEKCDL----NSILFLLTPAEDMA  550 (720)
T ss_pred             cccccccccccccccCCceEEEEcC-CcCcccccccccCccHHHHHHHHHHc-CCEEEecCC----CeEEEEeCCCCCHH
Confidence            0            012333334332 333            68899999877 998764322    23333233346999


Q ss_pred             HHHHHHHHHHHHHH
Q 015729          358 QLLGCLAGVEMILK  371 (401)
Q Consensus       358 di~~~~~~i~~~l~  371 (401)
                      ++++++++|.+.-+
T Consensus       551 ~~~~Lv~aL~~f~~  564 (720)
T PRK13578        551 KLQQLVAMLARFEK  564 (720)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987744

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.81  E-value=1.1e-17  Score=152.43  Aligned_cols=213  Identities=18%  Similarity=0.137  Sum_probs=162.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCC
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE  119 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  119 (401)
                      +....+++.++.+.|.+.   ++..++|..|+..++..++++|++|++....|.+..  +......+|++...++.+   
T Consensus        77 Pt~~~le~~iaal~ga~~---~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~---  150 (409)
T KOG0053|consen   77 PTRDVLESGIAALEGAAH---ALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVD---  150 (409)
T ss_pred             CchHHHHHHHHHHhCCce---EEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechh---
Confidence            346689999999998877   677888999999999999999999999998877776  566777899999998876   


Q ss_pred             CCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecC
Q 015729          120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS  199 (401)
Q Consensus       120 ~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~  199 (401)
                        |++.+++++++    ++++|++..|.||+..+.|+++|.++|++  +|+++++|++-+.+ ...+.-..|+||++.|.
T Consensus       151 --~~~~~~~~i~~----~t~~V~~ESPsNPll~v~DI~~l~~la~~--~g~~vvVDnTf~~p-~~~~pL~lGADIV~hSa  221 (409)
T KOG0053|consen  151 --DLKKILKAIKE----NTKAVFLESPSNPLLKVPDIEKLARLAHK--YGFLVVVDNTFGSP-YNQDPLPLGADIVVHSA  221 (409)
T ss_pred             --hHHHHHHhhcc----CceEEEEECCCCCccccccHHHHHHHHhh--CCCEEEEeCCcCcc-cccChhhcCCCEEEEee
Confidence              78899999884    57999999999999999999999999999  99999999996544 34566778999999999


Q ss_pred             CCcccCCCcc--eEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHH
Q 015729          200 QKALSLPTGM--GIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE  276 (401)
Q Consensus       200 ~K~l~g~~g~--G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~  276 (401)
                      +|+++|..-+  |.++.+ +++..++....              ..-|    +++++.   .+...++-+..  +.-+++
T Consensus       222 TKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~--------------~~lg----~~~~p~---~~~ll~Rglkt--l~lRi~  278 (409)
T KOG0053|consen  222 TKYIGGHSDVIGGSVVLNSEELASRLKFLQ--------------EDLG----WCEDPF---DLFLLSRGLKT--LHLRIN  278 (409)
T ss_pred             eeeecCCcceeeeEEecCcHHHHHHHHHHH--------------HHhc----CCCCHH---HHHHHhcCcch--hhhhHH
Confidence            9999876543  888886 77766665321              1112    245552   22222332222  334556


Q ss_pred             HHHHHHHHHHHHHHHc
Q 015729          277 RHRRLGKATRLAVEAW  292 (401)
Q Consensus       277 ~~~~~~~~l~~~L~~~  292 (401)
                      +..+++..+.+.|++.
T Consensus       279 ~~~ena~~~A~~Le~~  294 (409)
T KOG0053|consen  279 KHSENALKIALLLEAH  294 (409)
T ss_pred             HHHHHHHHHHHHhhhC
Confidence            6667777777777763

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=4e-18  Score=153.97  Aligned_cols=328  Identities=16%  Similarity=0.187  Sum_probs=226.1

Q ss_pred             ccCCCcCChHHHHHHHccCcCCC----CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEE
Q 015729           13 FVPGPVHIPDQVIRAMNRNNEDY----RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRII   88 (401)
Q Consensus        13 ~~~~p~~~~~~v~~a~~~~~~~~----~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl   88 (401)
                      |.....+..+++.+++.++....    ..-...+.-.++++.+|+++|.+..  ++|..| -..+...+.+++.||.-|+
T Consensus       149 Fa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~e~a--~vF~mG-f~TNs~~~p~l~~~gsLIi  225 (519)
T KOG1357|consen  149 FAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGVEDA--IVFSMG-FATNSMNIPSLLGKGSLII  225 (519)
T ss_pred             ccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCCcce--EEEecc-ccccccCcceeecCCccee
Confidence            44477888899999999966432    2233456677999999999999874  455443 5555555677899998887


Q ss_pred             EEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhcc-----C-CCC--ce-EEEEEecCCCcccccchHHH
Q 015729           89 SFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAAD-----T-AHT--IK-AICIVHNETATGVTNNLSKV  159 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~-----~-~~~--~~-~i~~~~~~n~tG~~~~l~~i  159 (401)
                      .....|-|..  .-++..|+.++....+     |.+.||+.+++.     + .++  -| +++.....++-|.+.+++++
T Consensus       226 SDelNHaSi~--~GaRLSgAtiRVfkHN-----dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~v  298 (519)
T KOG1357|consen  226 SDELNHASLI--TGARLSGATTRVFRHN-----DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEV  298 (519)
T ss_pred             eccccchhee--ccccccCceEEEEecC-----CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHH
Confidence            7777666654  3478889999999877     677888877651     1 011  13 34445666789999999999


Q ss_pred             HHHhhhcCCCcEEEEecccccCcce---------eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCcc
Q 015729          160 RKLLDEYRHPALFLVDGVSSICAID---------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV  230 (401)
Q Consensus       160 ~~l~~~~~~~~~li~D~a~~~~~~~---------~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~  230 (401)
                      ++++|+  +..+++.|+||+.|++.         +..+...+||+.++..|.+ |..| |++..++++.+.+........
T Consensus       299 valkkk--ykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSf-ga~G-Gyiagsk~lid~lrt~s~~~~  374 (519)
T KOG1357|consen  299 VALKKK--YKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSF-GAAG-GYIAGSKELIDYLRTPSPSAL  374 (519)
T ss_pred             HHhhcc--ccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhc-cccc-ceecCcHHHHhhhccCCCcee
Confidence            999999  99999999999988763         2334446899999999987 3554 899999999887765433222


Q ss_pred             ccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHH-Hh---cHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCc
Q 015729          231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-EE---GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD  306 (401)
Q Consensus       231 ~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~-~~---g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~  306 (401)
                      |                ..+.++..+.....++..+. +.   ..++..++..++..+++..|.+.|+.+...++   ++
T Consensus       375 y----------------at~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~gfivyG~~d---Sp  435 (519)
T KOG1357|consen  375 Y----------------ATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGFIVYGNND---SP  435 (519)
T ss_pred             e----------------cccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCcEEEecCCC---CC
Confidence            1                11233332333444555443 11   25788899999999999999999998887643   32


Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC---CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          307 TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       307 ~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~---~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                       ++.+-+-.+.....+.+.|+++ +|.+....++   ......|++..+.+++|++|++++.+..+=++.+.
T Consensus       436 -Vvplll~~~~k~~~f~r~~l~~-nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~~~~~  505 (519)
T KOG1357|consen  436 -VVPLLLYGPAKIVAFSREMLER-NIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRVGDEDGV  505 (519)
T ss_pred             -cceeeecCcccccHHHHHHHhc-CceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhchhhcc
Confidence             2222221122345777788766 5554433332   23456899888899999999999999877544433

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=99.80  E-value=1.9e-17  Score=150.55  Aligned_cols=333  Identities=16%  Similarity=0.086  Sum_probs=232.6

Q ss_pred             ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc---C-C-CC---CeEEEEcCCcchHHHHHHHHHcCCc
Q 015729           38 PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT---L-S-PG---DRIISFLIGQFSLLWIDQQQRLNFN  109 (401)
Q Consensus        38 ~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~---~-~-~g---d~vl~~~~~~~~~~~~~~~~~~g~~  109 (401)
                      +.......++-++++.+++.+....-..|.|+|+++..+....   . + +|   .+++++...  ...|.+.++.++++
T Consensus       116 p~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v--~~a~eK~a~yf~v~  193 (491)
T KOG1383|consen  116 PVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNV--HAAFEKAARYFEVE  193 (491)
T ss_pred             chhHHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHH--HHHHHHHHhhEEEE
Confidence            3345667789999999999985544466889999966554321   1 1 12   234444332  22367889999999


Q ss_pred             EEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcc-----
Q 015729          110 VDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-----  183 (401)
Q Consensus       110 ~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~-----  183 (401)
                      ++.|++++ +.++|+..+.+.+++++    ..++.+.++.|+|.+.|+++|.++..+. +++.+++|++.+.+..     
T Consensus       194 l~~V~~~~~~~~~D~~k~~~~i~eNt----i~lv~~~~~~p~G~~e~ve~l~~l~~e~-w~ipiHvDa~~GgFi~p~~~~  268 (491)
T KOG1383|consen  194 LREVPLDEGDYRVDPGKVVRMIDENT----IMLVGSLPNFPTGEIEDVEKLADLLLEI-WDIPIHVDACLGGFINPAGYL  268 (491)
T ss_pred             EEeeeccccceEecHHHHHHHhccce----EEEEEEcCCCCccchhhHHHHHHHHHHH-hCCceeecccCcccccccccc
Confidence            99999995 45899999999999755    8999999999999999999999987765 9999999999775544     


Q ss_pred             ---eeccCcccceEEEecCCCcccCCCcceEEEecHH-HHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHH
Q 015729          184 ---DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPK-ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGL  259 (401)
Q Consensus       184 ---~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~  259 (401)
                         ++|+...++..+..+.||+-..+.|+|++.-+.+ +..    ..   +++ -.++...........++.+..+++++
T Consensus       269 ~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~----~q---~~~-~~~w~Gg~y~s~TlngSR~g~~va~~  340 (491)
T KOG1383|consen  269 NEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLP----HQ---LFF-HTDWLGGIYASPTLNGSRPGSQVAAQ  340 (491)
T ss_pred             CccccccCCCCceeEeeccceeeeeecCcEEEEEccccccc----ce---EEE-eccccCccccCcccccCCcccHHHHH
Confidence               4577777888999999998888999987765443 211    10   000 01111111112223345666778999


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEc--CCCCCHHHHHHHHHhhCCeEEcc
Q 015729          260 RAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV--PSHINSSEIVRRAWQRYNLSLGL  336 (401)
Q Consensus       260 ~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~~~~i~v~~  336 (401)
                      ++++-.+..+|+.+..+++.++++.+++.+++. ++++.++.       .++|..  ....+..+++..|.+. |..+..
T Consensus       341 wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp-------~vs~~~~~s~~~~i~elsd~l~~~-GW~lna  412 (491)
T KOG1383|consen  341 WAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKP-------LVSFILFGSNDVNIFELSDLLRKK-GWILNA  412 (491)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCC-------cEEEEEccCCccchhhhhHHHHhc-CcCccc
Confidence            999999999999999999999999999999997 88887641       233332  1346788999999865 765543


Q ss_pred             CCCCCCCcEEEEeecccCC-HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHccCCC
Q 015729          337 GLNKVAGKVFRIGHLGHLN-ELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPM  396 (401)
Q Consensus       337 g~~~~~~~~~Ri~~~~~~~-~~di~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (401)
                      --.| .+.+  +++.-.+. ++--|+++.-|++++.++.-.+....+..+|.+.++.-.|.
T Consensus       413 lq~P-~a~H--i~vt~~~~~~~~A~~~v~Di~~~~~el~~~p~~~~~~~~a~yg~a~~~~~  470 (491)
T KOG1383|consen  413 LQFP-AAIH--ICVTRVHAREDVADRFVADIRKVVEELKSLPESKTHGMAAIYGLAQKTPD  470 (491)
T ss_pred             cCCC-CceE--EEEEeeeccHHHHHHHHHHHHHHHHHHHhCCCcccCcccchhhhhhcCCc
Confidence            3222 2333  32222223 34468999999999988766555555555888887555544

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.80  E-value=2.7e-17  Score=144.78  Aligned_cols=367  Identities=17%  Similarity=0.170  Sum_probs=239.7

Q ss_pred             cccCCCcCChHHHHHHHccCcCCC--------C---CccHHHH-HHHHHHHHHHHhcCCCCceE--EecCChhHHHHHHH
Q 015729           12 LFVPGPVHIPDQVIRAMNRNNEDY--------R---SPAVPAL-TKTLLEDIKKIFKTTSGTPF--LIPTTGTGAWESAL   77 (401)
Q Consensus        12 ~~~~~p~~~~~~v~~a~~~~~~~~--------~---~~~~~~~-~~~l~~~la~~~g~~~~~~i--~~~~g~t~a~~~~~   77 (401)
                      -+++.--..+.+|+||+.....+.        +   +.++.+. ..-++++..+.|+.++..|-  +-+-+|+-|+..+-
T Consensus        44 eLIaSENFts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavY  123 (477)
T KOG2467|consen   44 ELIASENFTSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVY  123 (477)
T ss_pred             eEeecccchHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHH
Confidence            344555567889999988744321        1   2223333 33467777889999865443  22557899999988


Q ss_pred             hccCCCCCeEEEEcC---CcchHHHHHHHHHcCCcEEE-----EeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCC
Q 015729           78 TNTLSPGDRIISFLI---GQFSLLWIDQQQRLNFNVDV-----VESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNET  148 (401)
Q Consensus        78 ~~~~~~gd~vl~~~~---~~~~~~~~~~~~~~g~~~~~-----v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n  148 (401)
                      .++++|+++|+-.+.   ||-++.+..-.+.-.+.-++     ..+++ .+-+|.|.||+....   -+||+|+.-.  +
T Consensus       124 tall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~---frPk~iiaG~--S  198 (477)
T KOG2467|consen  124 TALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATL---FRPKLIIAGT--S  198 (477)
T ss_pred             hhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHh---cCCcEEEecc--c
Confidence            999999999987765   55555432211111111111     12233 356899999998765   4677776553  3


Q ss_pred             CcccccchHHHHHHhhhcCCCcEEEEecccccC-----cceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhc
Q 015729          149 ATGVTNNLSKVRKLLDEYRHPALFLVDGVSSIC-----AIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK  223 (401)
Q Consensus       149 ~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~-----~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~  223 (401)
                      .--...|.+++.++|++  .|.+++.|-||-.|     ..+..++  .+||++.+.||++.||.| |+++.++.... ..
T Consensus       199 aY~R~~DYaR~R~Iad~--~gA~Lm~DMAHISgLVAA~vipsPFe--y~DiVTTTTHKsLRGPRg-~mIFyRkGvk~-~~  272 (477)
T KOG2467|consen  199 AYSRLIDYARFRKIADK--VGAYLMADMAHISGLVAAGVIPSPFE--YCDIVTTTTHKSLRGPRG-AMIFYRKGVKS-IK  272 (477)
T ss_pred             cchhhccHHHHHHHHHh--cCceeehhhhhHHHHHhcccCCCccc--ccceeeccccccccCCcc-eeEEEeccCCc-CC
Confidence            33466789999999999  99999999998544     3444555  689999999999998886 88888876422 22


Q ss_pred             cCCCCccccchHHHHHH--hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Q 015729          224 TAKSVRVFFDWKDYIKF--YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKE  301 (401)
Q Consensus       224 ~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~  301 (401)
                      +........++.+..+.  |. |  .-+.|.-..++++.-||+.....+++...++..+|++.+.+.|.++|+++.... 
T Consensus       273 ~k~g~~i~ydlE~kINfaVFP-~--lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~Gy~lvtgG-  348 (477)
T KOG2467|consen  273 PKQGKEILYDLEDKINFAVFP-G--LQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISRGYKLVTGG-  348 (477)
T ss_pred             CCCCCcceechhhhhhhhccc-c--ccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHcCceEecCC-
Confidence            22222334444443322  22 1  122366667788888888877777888999999999999999999999998743 


Q ss_pred             ccCCceeEEEEc-CCCCCHHHHHHHHHhhCCeEEcc----C-CCCCCCcEEEEeecccCC----HHHHHHHHHHHHHHHH
Q 015729          302 EWFSDTVTAVIV-PSHINSSEIVRRAWQRYNLSLGL----G-LNKVAGKVFRIGHLGHLN----ELQLLGCLAGVEMILK  371 (401)
Q Consensus       302 ~~~~~~~~~~~~-~~~~~~~~l~~~L~~~~~i~v~~----g-~~~~~~~~~Ri~~~~~~~----~~di~~~~~~i~~~l~  371 (401)
                        ..+.++.+.+ |.|++...+-+.| +..+|.+..    | .....++.+|++..+-++    ++|+++..+-|.++.+
T Consensus       349 --TDnHlvLvDLr~~G~dGarvE~vl-e~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~  425 (477)
T KOG2467|consen  349 --TDNHLVLVDLRPKGVDGARVEKVL-ELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK  425 (477)
T ss_pred             --ccceEEEEeccccCCchHHHHHHH-HHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence              3445555665 4677776665555 444666432    2 223345679999876443    7899999998887754


Q ss_pred             h-cCCCCCcc-hHHHHHHHHHHccCCC
Q 015729          372 D-VGYPVKLG-SGVAAASAYLQNNIPM  396 (401)
Q Consensus       372 ~-~~~~~~~~-~~~~~~~~~~~~~~~~  396 (401)
                      - ..++..-+ .-+.++..++..+.++
T Consensus       426 i~~~~~~~~~~~~lkdf~~~~~~~~~~  452 (477)
T KOG2467|consen  426 IALEIQKEAGGKKLKDFKKFLSENKVM  452 (477)
T ss_pred             HHHHHHhhcccchHHHHHHHhccCchh
Confidence            1 22222223 4477777777666654

>PRK06149 hypothetical protein; Provisional

Probab=99.80  E-value=4.3e-17  Score=170.57  Aligned_cols=301  Identities=14%  Similarity=0.060  Sum_probs=199.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcchHHHHHHHHHc------CC-----
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQFSLLWIDQQQRL------NF-----  108 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~~------g~-----  108 (401)
                      +...++.+++++.+.... +.+.|+++|++|++.+++-  ......+|+....+||+.......-..      +.     
T Consensus       624 ~~~~elae~L~~~~p~~~-~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~  702 (972)
T PRK06149        624 AAVAEFSERLAALAPDGL-DTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRP  702 (972)
T ss_pred             HHHHHHHHHHHHhCCCCc-CEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCC
Confidence            456688888888874322 3599999999999998852  233446788888888876532211100      00     


Q ss_pred             -cEEEEeCCCC--CCC---C-----hHHHHHHHhc--cCCCCceEEEEEecCCCcccccc----hHHHHHHhhhcCCCcE
Q 015729          109 -NVDVVESDWG--EGA---K-----LDVLASKLAA--DTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPAL  171 (401)
Q Consensus       109 -~~~~v~~~~~--~~~---d-----~~~le~~~~~--~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~  171 (401)
                       .+..++.+..  ..+   +     .+++++.++.  ...+++.+|++.......|.+.+    ++++.++|++  +|++
T Consensus       703 ~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~--~g~l  780 (972)
T PRK06149        703 DWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRA--RGGV  780 (972)
T ss_pred             CCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHH--cCCE
Confidence             1122222111  111   1     2344444432  11146889999988888898887    8999999999  9999


Q ss_pred             EEEecccc-cCcc---eeccC--cccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCC
Q 015729          172 FLVDGVSS-ICAI---DFRMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGT  245 (401)
Q Consensus       172 li~D~a~~-~~~~---~~~~~--~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  245 (401)
                      +|+||++. +|..   .+.++  ...+|+++++  |.++++.++|.+++++++.+.+...   ..+            ++
T Consensus       781 lI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~g--K~lg~G~Pl~av~~~~~i~~~~~~~---~~~------------~s  843 (972)
T PRK06149        781 CIADEVQVGYGRLGHYFWGFEQQGVVPDIITMA--KGMGNGHPLGAVITRREIAEALEAE---GYF------------FS  843 (972)
T ss_pred             EEEEeehhcCCccCccchhhhhcCCCCCEEEec--ccccCCeeeEEEEEcHHHHhhhccC---Ccc------------cC
Confidence            99999984 4321   11222  2347888765  9998777789999999988766531   000            11


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcCCC-----CC
Q 015729          246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSH-----IN  318 (401)
Q Consensus       246 ~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~-----~~  318 (401)
                        +++.++..+++..++++.+++++   ..++..+..+++++.|+++  ...+...  ....+.++.+++-..     .+
T Consensus       844 --T~~gnP~~~aaala~L~~i~~e~---l~~~~~~~G~~l~~~L~~l~~~~~~i~~--vrG~Gl~~gvel~~~~~~~~~~  916 (972)
T PRK06149        844 --STGGSPVSCRIGMAVLDVLREEK---LQENARRVGDHLKARLEALADRHPLIGA--VHGMGLYLGVELVRDRQTLEPA  916 (972)
T ss_pred             --CCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCeEE--EeecceEEEEEEecCcccCCCC
Confidence              22456677788889999887754   6777888888899998876  2443322  223556777776211     11


Q ss_pred             ---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          319 ---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       319 ---~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                         ...+++.|+++ ||.+.+...  .++.+||.+...+|++|+|++++++++++++
T Consensus       917 ~~~~~~i~~~l~~~-Gvl~~~~g~--~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~  970 (972)
T PRK06149        917 TEETAAICDRLLEL-GVIMQPTGD--HLNILKIKPPLCLDRESADFFVDMLDRVLTE  970 (972)
T ss_pred             hHHHHHHHHHHHhC-CeEEeecCC--CCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence               34678888876 999875421  2468999888789999999999999999865

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.80  E-value=3.5e-17  Score=142.21  Aligned_cols=313  Identities=21%  Similarity=0.205  Sum_probs=221.3

Q ss_pred             CcCChHHHHHHHccCcCCCC--C-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc-----c-CC--C-C
Q 015729           17 PVHIPDQVIRAMNRNNEDYR--S-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN-----T-LS--P-G   84 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~--~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~-----~-~~--~-g   84 (401)
                      ....+|.+++++++..+.-.  + .-+.+...++.+.+.+++|.+.   ++..+.|.+|.+.++.-     . .+  | .
T Consensus        73 qGhchpki~~aLqeq~~kLtlssrafYnd~~~~f~~~vt~lf~~~k---vlpmnTGaEa~Eta~KLaR~wgy~~K~ip~n  149 (427)
T KOG1402|consen   73 QGHCHPKIIKALQEQADKLTLSSRAFYNDVLGEFAEYVTKLFGYDK---VLPMNTGAEAVETACKLARKWGYRKKNIPKN  149 (427)
T ss_pred             cCCCCHHHHHHHHHHHhHhhhhhHHHhhhhHHHHHHHHHHhcCcce---eeecccchhHHHHHHHHHHHHHHhhccCCcc
Confidence            46677999999999765321  1 2245667789999999998876   78888889999988722     1 12  3 4


Q ss_pred             CeEEEEcCCcchH-HHH--------HHHHHcCC----cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcc
Q 015729           85 DRIISFLIGQFSL-LWI--------DQQQRLNF----NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATG  151 (401)
Q Consensus        85 d~vl~~~~~~~~~-~~~--------~~~~~~g~----~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG  151 (401)
                      ..+++...+.|.. ...        ..-+.+|-    .+..|+.+     |.++|+.+++.   +.++++++...+...|
T Consensus       150 ka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~-----d~eale~~l~~---~~vaaFivEPIQGEaG  221 (427)
T KOG1402|consen  150 KAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYG-----DAEALEVALKS---PNVAAFIVEPIQGEAG  221 (427)
T ss_pred             ceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccC-----CHHHHHHHhcC---CCeeEEEeeccccccc
Confidence            4455544433322 111        01111221    12222222     78999999986   5789999999999999


Q ss_pred             cccc----hHHHHHHhhhcCCCcEEEEecccccCc-----ceeccCcccceEEEecCCCcccCC-CcceEEEecHHHHHH
Q 015729          152 VTNN----LSKVRKLLDEYRHPALFLVDGVSSICA-----IDFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEA  221 (401)
Q Consensus       152 ~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~-----~~~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~  221 (401)
                      ++.|    +++..++|.+  ||+++|.|+.|....     +..+.+...+|++++.  |.++|+ .+.+.+.++++++-.
T Consensus       222 VvvP~~GYL~~vreLCtk--ynvl~I~DEvQTGl~RTGk~la~d~env~PDivilg--KalSGG~~Pvsavl~~~~im~~  297 (427)
T KOG1402|consen  222 VVVPPPGYLKKVRELCTK--YNVLLIADEVQTGLARTGKLLACDYENVRPDIVILG--KALSGGVYPVSAVLADDDIMLN  297 (427)
T ss_pred             eEeCCchhHHHHHHHHHh--hcEEEEehhhhhcccccCcEEEeehhhcCCCeEEEe--ccccCCeeeeEEEEecHHHHhc
Confidence            9986    7899999999  999999999987543     2457777789999987  888665 467888888998777


Q ss_pred             hccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCcc--ccC
Q 015729          222 SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKN--CTQ  299 (401)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~--~~~  299 (401)
                      +.+...                |+  .+.-++++++...++++.+.++   ++.++..++.+.++..|.++.-++  .. 
T Consensus       298 ~~pgeH----------------gs--TyggNpLg~~vaiAalevi~ee---kL~era~~lG~~l~~~L~~l~~~~p~~v-  355 (427)
T KOG1402|consen  298 IKPGEH----------------GS--TYGGNPLGCAVAIAALEVIVEE---KLVERAAKLGEILRDQLNKLQKKFPHVV-  355 (427)
T ss_pred             cCCCcc----------------cc--ccCCChHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccccccchh-
Confidence            765432                22  2235567778889999998874   688999999999999999973332  11 


Q ss_pred             CCccCCceeEEEEcC----CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          300 KEEWFSDTVTAVIVP----SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       300 ~~~~~~~~~~~~~~~----~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      +.....+.+..+.+.    .+.++.++|-.|.++ |+.-.+.    .++.+||.+...++++|+++.+++|.+++.
T Consensus       356 ~~VRGrGl~~ai~i~~~~~~~~~aw~~cl~lk~~-g~LAkpt----H~~IiRfaPPL~I~e~dl~eg~e~i~k~i~  426 (427)
T KOG1402|consen  356 KEVRGRGLLNAIVINPSKTSGQDAWDVCLALKEN-GLLAKPT----HGNIIRFAPPLVISEEDLREGIEAIEKTIA  426 (427)
T ss_pred             heeeccceEEEEEeccccccchhHHHHHHccccc-ccccCCC----CCCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence            122245566666662    235677888888776 7664433    256899999889999999999999988763

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.80  E-value=6.8e-17  Score=155.09  Aligned_cols=311  Identities=14%  Similarity=0.121  Sum_probs=200.1

Q ss_pred             hHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcch
Q 015729           21 PDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQFS   96 (401)
Q Consensus        21 ~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~   96 (401)
                      +|.+.+++.++...  +.. ...+...++.++|.+....  .+.+.|+++|++|++.++..  ......+|+....+||+
T Consensus        71 ~p~v~~ai~~q~~~~~~~~-~~~~~~~~la~~l~~~~p~--~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG  147 (428)
T PRK12389         71 HPHITKAITEAAENGVLYG-TPTELEIEFAKMLKEAIPS--LEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHG  147 (428)
T ss_pred             CHHHHHHHHHHHHhCCccC-CCCHHHHHHHHHHHHhCCC--CcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCC
Confidence            35555555554321  111 1234456777777776642  24599999999999998843  23445678888888888


Q ss_pred             HHHHHHHHHcCC-------------------cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc--
Q 015729           97 LLWIDQQQRLNF-------------------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN--  155 (401)
Q Consensus        97 ~~~~~~~~~~g~-------------------~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~--  155 (401)
                      .....+.. .+.                   ++..++  .   -|++.+++.+.+.. +++.+|++....+..|.+.|  
T Consensus       148 ~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~d~~~l~~~l~~~~-~~vaavi~EPv~g~~G~~~p~~  220 (428)
T PRK12389        148 HSDLVLVA-AGSGPSTLGTPDSAGVPKSIAQEVITVP--F---NDIEALKEALDKWG-DEVAAVLVEPIVGNFGIVEPKP  220 (428)
T ss_pred             ChHHHHHh-cCCcccccCCCCCCCCCCcccCceEEcC--C---CCHHHHHHHHHhcC-CcEEEEEEeCCCCCCCCcCCCH
Confidence            76322221 111                   111111  1   17899999887544 46889999988888898887  


Q ss_pred             --hHHHHHHhhhcCCCcEEEEecccccCccee----ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCc
Q 015729          156 --LSKVRKLLDEYRHPALFLVDGVSSICAIDF----RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR  229 (401)
Q Consensus       156 --l~~i~~l~~~~~~~~~li~D~a~~~~~~~~----~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~  229 (401)
                        +++|.++|++  +|+++|+||++..+-..+    ......+|+++++  |.++++.++|.+++++++.+.+....  .
T Consensus       221 ~yl~~l~~lc~~--~g~llI~DEV~tG~Rt~~~~a~~~~gv~PDivt~g--K~lggG~Pi~av~~~~~i~~~~~~~~--~  294 (428)
T PRK12389        221 GFLEAVNELAHE--AGALVIYDEVITAFRFMYGGAQDLLGVEPDLTALG--KIIGGGLPIGAYGGRKDIMEQVAPLG--P  294 (428)
T ss_pred             HHHHHHHHHHHH--cCCEEEEEccccccccCcchhhHHhCCCCCeeeec--hhhcCCCceeEEeEHHHHHhhhccCC--C
Confidence              8999999999  999999999987541111    1112347887665  99987777899999999887764211  0


Q ss_pred             cccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCce
Q 015729          230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDT  307 (401)
Q Consensus       230 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~  307 (401)
                      .+.           +  .+++.++..+++..++++.+.+++   ..++..++.+++++.|+++  ...+.... ....+ 
T Consensus       295 ~~~-----------~--~T~~gnpl~~Aaala~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~~~v-~r~~g-  356 (428)
T PRK12389        295 AYQ-----------A--GTMAGNPASMAAGIACLEVLQQEG---VYEKLDRLGAMLEEGILEAAEKHGITITI-NRLKG-  356 (428)
T ss_pred             ccc-----------c--cCCccCHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHhCCCCEEE-EecCc-
Confidence            000           1  133466777888899999887653   6777888888898888874  22221110 01122 


Q ss_pred             eEEEEcCC-CC---------C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          308 VTAVIVPS-HI---------N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       308 ~~~~~~~~-~~---------~---~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      ++.+.+.+ ..         +   ...+.+.|.++ ||.+.+...    +.+.  +...+|++|++++++++++++++
T Consensus       357 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~----~~~~--~~l~~t~e~id~~~~~l~~~l~~  427 (428)
T PRK12389        357 ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQ-GINLAPSKY----EAWF--LTTAHTEEDIEETLEAVDRAFAQ  427 (428)
T ss_pred             EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHC-CcEeecCCC----CCee--ecCCCCHHHHHHHHHHHHHHHHh
Confidence            44454421 11         1   34677777766 999876421    2233  34567999999999999999865

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.80  E-value=5.6e-17  Score=163.96  Aligned_cols=318  Identities=14%  Similarity=0.046  Sum_probs=222.6

Q ss_pred             CcCChHHHHHHHccCcCC---C--CCcc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-C--CCC
Q 015729           17 PVHIPDQVIRAMNRNNED---Y--RSPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-L--SPG   84 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~---~--~~~~----~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~--~~g   84 (401)
                      |...|+.+.+.+.+....   +  ++++    ..+..-+++.+++++.|.+-.. ..+..++|++.++++.+. .  +++
T Consensus        75 ~~~~p~~i~r~v~~~p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtGm~~aN-aSl~d~atA~aEa~~~a~~~~~~~~  153 (939)
T TIGR00461        75 GTILPPVIQRNLLENPGWYTAYTPYQPEISQGRLEALLNFQTVVSDLTGLPVAN-ASLLDEGTAAAEAMALSFNVSKKKA  153 (939)
T ss_pred             CCcCChHHHHHHHhCchhhhcCCCCChhhhhHHHHHHHHHHHHHHHHHCCChhh-hhccchhhHHHHHHHHHHHhhcCCC
Confidence            566677776566664321   1  1222    2344668999999999998543 567788888888766553 2  234


Q ss_pred             CeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHH
Q 015729           85 DRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKL  162 (401)
Q Consensus        85 d~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l  162 (401)
                      ++|++++..|+...  +...++..|++++.++        ++++++.++      +.++++. ..|.+|.+.|+++|.++
T Consensus       154 ~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~--------~~~l~~~~~------~~~v~~q-~Pn~~G~ied~~~i~~~  218 (939)
T TIGR00461       154 NKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD--------CSDIKKAVD------VFGCLLQ-YPATDGSILDYKQLIDA  218 (939)
T ss_pred             CEEEECCCCCcchHHHHHHHHHhcCcEEEEEc--------HHHHhhcCC------EEEEEEE-CCCCCeEEecHHHHHHH
Confidence            78999999887765  4456678899988884        445555442      3444444 45779999999999999


Q ss_pred             hhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCccc----CCCcceEEEecHHHHHHhccCCCC---------c
Q 015729          163 LDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALS----LPTGMGIVCASPKALEASKTAKSV---------R  229 (401)
Q Consensus       163 ~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~----g~~g~G~l~~~~~~~~~~~~~~~~---------~  229 (401)
                      +|+  .|.++++++-........+..++|+||++.+.+++..    |+++.|++++++++.+.++.....         .
T Consensus       219 ~h~--~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~  296 (939)
T TIGR00461       219 LHS--HKSLVSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTA  296 (939)
T ss_pred             HHH--cCCEEEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCcc
Confidence            999  9999999776655556667778899999887776432    245679999999998888765532         0


Q ss_pred             cc--cchHHHHHHhhcCCCCCCCCcHHH---HHHHHHH--HHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCc
Q 015729          230 VF--FDWKDYIKFYNLGTFWPYTPSIQL---LYGLRAA--LDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEE  302 (401)
Q Consensus       230 ~~--~~~~~~~~~~~~g~~~~~~~~~~~---~~a~~~a--l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~  302 (401)
                      +.  .+..++..+.++++     +++..   +.++.++  +.++..+|++++.++...++.++.+.|.+.|+++...  .
T Consensus       297 ~~l~LqtReqhIrRekAt-----SNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~--~  369 (939)
T TIGR00461       297 LRLALQTREQHIRRDKAT-----SNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLENDPHELINK--T  369 (939)
T ss_pred             ceeecccccccccccccC-----cchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--C
Confidence            11  12233445666665     44432   3333334  3445577899999999999999999999999988753  2


Q ss_pred             cCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHH
Q 015729          303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVE  367 (401)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~  367 (401)
                       ... -+.++++ ..+++++.+.+.++ ||.++..    .++.+++++..++|++||+.+++.+.
T Consensus       370 -fF~-~~~v~~~-~~~~~~i~~~~~~~-gi~l~~~----~~~~i~~s~~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       370 -WFD-TLTVKVG-NGISSELLKAAEEF-NINLRAV----DTTTVGIALDETTTKADVENLLKVFD  426 (939)
T ss_pred             -ccc-eEEEEeC-CCCHHHHHHHHHHC-CCeeeec----CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence             222 2335553 23678899999876 9887642    24689999999999999999999985

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.80  E-value=9.7e-17  Score=154.75  Aligned_cols=323  Identities=14%  Similarity=0.116  Sum_probs=201.8

Q ss_pred             CChHHHHHHHccCcCC----CCCccHHHHHHHHHHHHHHHhcCCC-CceE-EecCChhHHHHHHHhc--cCCCCCeEEEE
Q 015729           19 HIPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTS-GTPF-LIPTTGTGAWESALTN--TLSPGDRIISF   90 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~g~~~-~~~i-~~~~g~t~a~~~~~~~--~~~~gd~vl~~   90 (401)
                      .-+|++.+++.++...    +......+...++.+++.+.+.... ...+ +++++|++|++.++..  .....++|+..
T Consensus        74 H~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~  153 (459)
T PRK06931         74 HNHPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISF  153 (459)
T ss_pred             CCCHHHHHHHHHHHhhhccccccccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEE
Confidence            3345566665554321    1111223455677788877764321 1124 5568999999998843  23445689999


Q ss_pred             cCCcchHHHHHHHHHc-----------CCcEEEEeCCCCCC--C------ChHHH----HHHHhc--cCCCCceEEEEEe
Q 015729           91 LIGQFSLLWIDQQQRL-----------NFNVDVVESDWGEG--A------KLDVL----ASKLAA--DTAHTIKAICIVH  145 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~-----------g~~~~~v~~~~~~~--~------d~~~l----e~~~~~--~~~~~~~~i~~~~  145 (401)
                      ..+||+.....+....           ...+..++.+...+  +      +.+.+    ++.+++  ...+++.+|++..
T Consensus       154 ~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EP  233 (459)
T PRK06931        154 SGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEA  233 (459)
T ss_pred             CCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEcc
Confidence            9999988733332110           01233344322111  0      22333    333332  0113588999998


Q ss_pred             cCCCcccccc----hHHHHHHhhhcCCCcEEEEecccccCcc---ee--ccCcccceEEEecCCCcccCCCcceEEEecH
Q 015729          146 NETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---DF--RMDEWGIDVALTGSQKALSLPTGMGIVCASP  216 (401)
Q Consensus       146 ~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~~--~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~  216 (401)
                      .+...|.+.+    ++++.++|++  +|+++|.||++.....   .+  +.....+|+++++  |.++++.++|.+..++
T Consensus       234 iqg~gG~~~~~~~yl~~lr~lc~~--~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~g--K~l~gG~Pi~av~~~~  309 (459)
T PRK06931        234 IQGEGGVNPAPVEWLQKIREVTQK--HGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMS--KAVGGGLPLAVLGIKK  309 (459)
T ss_pred             ccCCCCCcCCCHHHHHHHHHHHHH--cCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEec--ccccCCcceeeeeeHH
Confidence            8888888765    7889999999  9999999999763321   11  1223347888886  9998877788888877


Q ss_pred             HHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CC
Q 015729          217 KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GL  294 (401)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~  294 (401)
                      +. +.+....                .++  +++.++..+++..++++.+.+++   ..++..+..++|.+.|+++  ..
T Consensus       310 ~~-~~~~~~~----------------~~~--T~~gnpla~aaala~L~~l~~~~---l~~~~~~~G~~l~~~L~~l~~~~  367 (459)
T PRK06931        310 EF-DAWQPGG----------------HTG--TFRGNQLAMATGLTTLKILKEEN---LAQNAAERGEWLKAQLAELQKRY  367 (459)
T ss_pred             HH-hhccCCC----------------CCC--CCCCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHhC
Confidence            64 4442110                011  33466677888889999887764   6677788888888888875  34


Q ss_pred             ccccCCCccCCceeEEEEcCCC---------C--C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHH
Q 015729          295 KNCTQKEEWFSDTVTAVIVPSH---------I--N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL  360 (401)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~---------~--~---~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~  360 (401)
                      .+...  ....+.++.+++.+.         .  +   ...+...|.++ ||.+.+...  .++.+|+.+...+|++|+|
T Consensus       368 ~~i~~--vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~~~--~~~~l~~~Ppl~it~~eid  442 (459)
T PRK06931        368 PCIGN--VRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFEN-GLLLERGGR--NGNVVRLLPPLLITQAECE  442 (459)
T ss_pred             CCeEe--EecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHC-CcEEeecCC--CCCEEEEECCCCcCHHHHH
Confidence            33221  224566777776321         0  1   23466667666 988865321  2578999888899999999


Q ss_pred             HHHHHHHHHHHh
Q 015729          361 GCLAGVEMILKD  372 (401)
Q Consensus       361 ~~~~~i~~~l~~  372 (401)
                      ++++++++++++
T Consensus       443 ~~~~~l~~~l~~  454 (459)
T PRK06931        443 EFIDRFEQALLA  454 (459)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999875

>PRK07480 putative aminotransferase; Validated

Probab=99.80  E-value=1.1e-16  Score=154.31  Aligned_cols=303  Identities=14%  Similarity=0.089  Sum_probs=194.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--C----C-C-CCeEEEEcCCcchHHHHHHHH--------
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--L----S-P-GDRIISFLIGQFSLLWIDQQQ--------  104 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~----~-~-gd~vl~~~~~~~~~~~~~~~~--------  104 (401)
                      .+...++.++|.+.+.... +.+.|+++|++|++.++...  .    . + ..+|+....+||+.....+.-        
T Consensus        93 ~~~~~~lae~L~~~~p~~~-~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~  171 (456)
T PRK07480         93 HPPAIELAAKLAEVAPPGF-NHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHE  171 (456)
T ss_pred             CHHHHHHHHHHHHhCCCCc-CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhc
Confidence            3556678888888875332 35999999999999988431  1    1 2 346888888888865322111        


Q ss_pred             HcCC---cEEEEeCCCCC--C--CC--------hHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHhhh
Q 015729          105 RLNF---NVDVVESDWGE--G--AK--------LDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDE  165 (401)
Q Consensus       105 ~~g~---~~~~v~~~~~~--~--~d--------~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~  165 (401)
                      ..+.   .+..++.+...  .  .+        .+.+++.+.+...+++.+|++...+...|...+    ++++.++|++
T Consensus       172 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~  251 (456)
T PRK07480        172 QGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRK  251 (456)
T ss_pred             ccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence            0010   11222211100  0  01        256665554332257889999998888888776    7889999999


Q ss_pred             cCCCcEEEEecccc-cCcc--e--eccCcccceEEEecCCCcccCCC-cceEEEecHHHHHHhccCCCCccccchHHHHH
Q 015729          166 YRHPALFLVDGVSS-ICAI--D--FRMDEWGIDVALTGSQKALSLPT-GMGIVCASPKALEASKTAKSVRVFFDWKDYIK  239 (401)
Q Consensus       166 ~~~~~~li~D~a~~-~~~~--~--~~~~~~~~di~~~s~~K~l~g~~-g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (401)
                        +|+++|+||++. +|-.  .  ++.....+|+++++  |.++++. ++|.+++++++.+.+.... ..          
T Consensus       252 --~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--K~l~gG~~Pi~av~~~~~i~~~~~~~~-~~----------  316 (456)
T PRK07480        252 --YDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTIA--KGLTSGYIPMGAVGVGDRVAEVLIEEG-GE----------  316 (456)
T ss_pred             --cCCEEEEechhhCCCcCcchhhhhhcCCCCCeeeee--hhhccCCccceEEEEcHHHHHHHhcCC-CC----------
Confidence              999999999985 3211  1  12223347888776  9997763 6899999999877663110 00          


Q ss_pred             HhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHH-HHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCC-
Q 015729          240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERH-RRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSH-  316 (401)
Q Consensus       240 ~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~-~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-  316 (401)
                       +..++  +++.++..+++..++|+.+.+++   ..++. .+..+++.+.|+++ ...+...  ....+.++.+++-+. 
T Consensus       317 -~~~~~--T~~gnpl~~Aaa~a~L~~l~~~~---l~~~~~~~~g~~l~~~l~~l~~~~~i~~--vrG~Glm~gie~~~~~  388 (456)
T PRK07480        317 -FNHGF--TYSGHPVAAAVALANLRILRDEG---IVERVRDDTGPYLQKRLRELADHPLVGE--VRGVGLVGAIELVKDK  388 (456)
T ss_pred             -cccCC--CCCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHhhcCCCeee--EEeecceEEEEEeccc
Confidence             11122  34566778889999999988765   55566 46777777777765 3332221  123456677776211 


Q ss_pred             C------C----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          317 I------N----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       317 ~------~----~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .      +    ...+...++++ ||.+.+.     ++.+||.+...+|++|+|+++++++++++++
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~-----~~~l~~~Ppl~it~~eid~~~~~l~~al~~~  449 (456)
T PRK07480        389 ATRERFEAGGGVGTICRDHCFAN-GLIMRAV-----GDRMIISPPLVITHAEIDELVEKARKALDAT  449 (456)
T ss_pred             cccccCcchhhHHHHHHHHHHHC-CcEEeec-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            0      1    13566667766 9888532     4679998888889999999999999999764

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.80  E-value=6.8e-17  Score=159.29  Aligned_cols=299  Identities=11%  Similarity=0.072  Sum_probs=208.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC--
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--  118 (401)
                      ...+.+.++..|+.||++..  .++++|+|.+|.+++.+.+.+||+|++.-++|-|..  ......|+++++++...+  
T Consensus       194 ~G~i~eAe~~AA~~fgAd~t--yfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~--haLilsga~PVYl~P~rn~~  269 (714)
T PRK15400        194 SGPHKEAEEYIARVFNADRS--YMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLT--HLMMMSDVTPIYFRPTRNAY  269 (714)
T ss_pred             ChHHHHHHHHHHHHhCCCcE--EEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHH--HHHHHcCCeEEEeccccccc
Confidence            45678999999999999874  577899999999999999999999999999988876  346778999999876432  


Q ss_pred             ---CCCC-----hHHHHHHHhccCC-CCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcc---ee-
Q 015729          119 ---EGAK-----LDVLASKLAADTA-HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI---DF-  185 (401)
Q Consensus       119 ---~~~d-----~~~le~~~~~~~~-~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~---~~-  185 (401)
                         +.++     ++.+++++++++. .+++.++++++ +..|.+++++.|+++|+.  ++  |++|+||+....   .+ 
T Consensus       270 Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~~I~~~~~~--~~--ilvDEAwgah~~F~p~~~  344 (714)
T PRK15400        270 GILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDV--KS--IHFDSAWVPYTNFSPIYE  344 (714)
T ss_pred             CCccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecCHHHHHHHhCC--CC--EEEEccchhhhccCcccC
Confidence               2344     8999999987652 23447777765 678999999999999988  76  699999874321   11 


Q ss_pred             --ccCcccc---e--EEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHH
Q 015729          186 --RMDEWGI---D--VALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYG  258 (401)
Q Consensus       186 --~~~~~~~---d--i~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a  258 (401)
                        .....+.   |  +++.|.||++.+....+++.++..+              +-......+..  +.+.+|+...+++
T Consensus       345 ~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~v--------------d~~~~n~a~~m--~~STSPsY~l~AS  408 (714)
T PRK15400        345 GKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDV--------------NEETFNEAYMM--HTTTSPHYGIVAS  408 (714)
T ss_pred             CcChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCCC--------------CHHHHHHHHHH--HcCCCcHHHHHHH
Confidence              1111233   4  8999999999877776776553321              11111111111  1234688888889


Q ss_pred             HHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHc-C------CccccCCC-------------c------------cCC
Q 015729          259 LRAALDLIFE-EGLENVIERHRRLGKATRLAVEAW-G------LKNCTQKE-------------E------------WFS  305 (401)
Q Consensus       259 ~~~al~~~~~-~g~~~~~~~~~~~~~~l~~~L~~~-g------~~~~~~~~-------------~------------~~~  305 (401)
                      +..+...+.. .| ++..++..+.+..+++.+.++ +      ++++.++.             .            ...
T Consensus       409 LD~a~~~m~~~~G-~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lD  487 (714)
T PRK15400        409 TETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLD  487 (714)
T ss_pred             HHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccC
Confidence            9999888774 44 678888889999999999886 4      44443210             0            013


Q ss_pred             ceeEEEEcCC----------CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          306 DTVTAVIVPS----------HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       306 ~~~~~~~~~~----------~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      +.-+.+..|.          |+++..+.+.|.+ +||.+....    ...+-+-+....|++++++++++|.+.-
T Consensus       488 P~Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e-~gI~~E~~d----~~~iLfl~s~g~t~~~~~~L~~aL~~f~  557 (714)
T PRK15400        488 PIKVTLLTPGMKKDGTMSDFGIPASIVAKYLDE-HGIVVEKTG----PYNLLFLFSIGIDKTKALSLLRALTDFK  557 (714)
T ss_pred             CceEEEEeCCCCCCccccccCCCHHHHHHHHHH-cCCEEEecC----CCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            3334444432          5678889999965 499876432    2333333444579999999999998763

>PRK06148 hypothetical protein; Provisional

Probab=99.80  E-value=5.3e-17  Score=169.96  Aligned_cols=339  Identities=12%  Similarity=0.032  Sum_probs=216.3

Q ss_pred             CCCCCCCcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--c
Q 015729            3 YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--T   80 (401)
Q Consensus         3 ~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~   80 (401)
                      |.++.++..+++.+...+.+++.+.+.+.. .+. ....+...++-++|.+.+.... +.+.|++|||+|++.+++.  .
T Consensus       626 ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l~-~~~-~~~~~~~~~lAe~L~~~~p~~~-~~v~f~nSGsEA~e~AlklAr~  702 (1013)
T PRK06148        626 YLDCFNNVCHVGHAHPRVVAAAARQAARLN-TNT-RYLHDAIVAYAERLTATLPDGL-TVAFFVNSGSEANSLALRLARA  702 (1013)
T ss_pred             EEEcccChhhcCCCCHHHHHHHHHHHhhcC-CcC-CcCCHHHHHHHHHHHHhCCCCc-CEEEEeCCcHHHHHHHHHHHHH
Confidence            444444444455454444555545444421 121 1223455677788887764322 4589999999999998843  2


Q ss_pred             CCCCCeEEEEcCCcchHHHHHHHH-------HcC----CcEEEEeCC--CCCCC---C-------hHHHHHHHhc--cCC
Q 015729           81 LSPGDRIISFLIGQFSLLWIDQQQ-------RLN----FNVDVVESD--WGEGA---K-------LDVLASKLAA--DTA  135 (401)
Q Consensus        81 ~~~gd~vl~~~~~~~~~~~~~~~~-------~~g----~~~~~v~~~--~~~~~---d-------~~~le~~~~~--~~~  135 (401)
                      .....+|+....+||+.....+..       ..+    ..+..++..  ....+   +       .+.+++.++.  ...
T Consensus       703 ~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  782 (1013)
T PRK06148        703 HTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKG  782 (1013)
T ss_pred             hcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccC
Confidence            344568999999888875321110       001    011122211  00111   1       1345555542  112


Q ss_pred             CCceEEEEEecCCCcccccc----hHHHHHHhhhcCCCcEEEEeccccc-Ccc---eeccC--cccceEEEecCCCcccC
Q 015729          136 HTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSI-CAI---DFRMD--EWGIDVALTGSQKALSL  205 (401)
Q Consensus       136 ~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~-~~~---~~~~~--~~~~di~~~s~~K~l~g  205 (401)
                      +++.+|++.......|.+.+    ++++.++|++  +|+++|.||++.. |-.   .+..+  ...+|+++++  |.+++
T Consensus       783 ~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~--~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~g--K~lgg  858 (1013)
T PRK06148        783 RGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRA--AGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMG--KPIGN  858 (1013)
T ss_pred             CceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHH--hCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeec--ccccC
Confidence            46889999988888888876    8899999999  9999999999853 211   12222  3347888775  99988


Q ss_pred             CCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 015729          206 PTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKAT  285 (401)
Q Consensus       206 ~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l  285 (401)
                      +.++|.+++++++.+.+....    .+           +  .+++.++..+++..++++.+.+++   ..++..+..++|
T Consensus       859 G~Plgav~~~~ei~~~~~~g~----~~-----------~--~Tf~gnpla~aaa~a~L~~i~~e~---l~~~~~~~G~~l  918 (1013)
T PRK06148        859 GHPMGAVVTTREIADSFDNGM----EY-----------F--NTFGGNPVSCAIGLAVLDIIEDED---LQRNALEIGNYL  918 (1013)
T ss_pred             CcceEEEEEcHHHHhhccCCC----cc-----------c--cCCCCCHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHH
Confidence            888999999999887664310    00           1  133456677888889999887754   777788888999


Q ss_pred             HHHHHHc--CCccccCCCccCCceeEEEEcCCC-----CC---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCC
Q 015729          286 RLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSH-----IN---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLN  355 (401)
Q Consensus       286 ~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~  355 (401)
                      ++.|+++  ...+...  ....+.++.+++...     .+   ...+.+.|+++ ||.+.+...  .++.+||.+...+|
T Consensus       919 ~~~L~~l~~~~~~i~~--VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~-Gvl~~~~g~--~~~vlr~~Ppl~it  993 (1013)
T PRK06148        919 LAGLRELQDRFDIIGD--VRGMGLFLGIELVTDRKTKAPATAIARYVKNGARER-GILIGTEGP--HDNVLKIRPPLIFS  993 (1013)
T ss_pred             HHHHHHHHHhCCCceE--EeeeceEEEEEecCCccccCccHHHHHHHHHHHHhC-CeEEeccCC--CCCEEEEeCCccCC
Confidence            9999875  3443321  223456777776321     11   23577777766 999865421  25789999888999


Q ss_pred             HHHHHHHHHHHHHHHHhc
Q 015729          356 ELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       356 ~~di~~~~~~i~~~l~~~  373 (401)
                      ++|+|+++++++++++++
T Consensus       994 ~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148        994 RADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999764

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.79  E-value=1.9e-16  Score=152.61  Aligned_cols=291  Identities=14%  Similarity=0.085  Sum_probs=188.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcchHHHHHHHHH-c-----------C
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQFSLLWIDQQQR-L-----------N  107 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~-~-----------g  107 (401)
                      +...++-++|.+.+..  -+.+.|+++||+|++.++..  .....++|+....+||+......... .           |
T Consensus       139 ~~~~~lAe~l~~~~p~--~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g  216 (474)
T PLN02482        139 LLENVLAEMVIDAVPS--VEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPG  216 (474)
T ss_pred             HHHHHHHHHHHHhCCC--CCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCC
Confidence            4455777778777643  24699999999999998843  23445688888888888541001110 0           1


Q ss_pred             C------cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHhhhcCCCcEEEEecc
Q 015729          108 F------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGV  177 (401)
Q Consensus       108 ~------~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a  177 (401)
                      .      .+..++  .+   |++++++.+.+.. +++.+|++....+..|.+.|    ++++.++|++  +|+++|+|++
T Consensus       217 ~~~~~~~~~~~~~--~n---d~~~l~~~l~~~~-~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~--~g~lLI~DEV  288 (474)
T PLN02482        217 VPKAATSATLTAP--YN---DLEAVKKLFEANK-GEIAAVILEPVVGNSGFIVPKKEFLEGLREITKE--NGALLVFDEV  288 (474)
T ss_pred             CCCCCCCCeEEec--CC---ChHHHHHHHHhCC-CceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHH--cCCEEEEecc
Confidence            1      111111  11   7899999887543 46889999988888898876    5679999999  9999999999


Q ss_pred             cccCcce--e--ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcH
Q 015729          178 SSICAID--F--RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSI  253 (401)
Q Consensus       178 ~~~~~~~--~--~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  253 (401)
                      +...-..  .  ......+|++++  .|.++++.++|.+.+++++++.+....  ..++          .+   +++.++
T Consensus       289 ~tGfR~g~~ga~~~~gv~PDi~t~--gK~lggG~Pigav~g~~ei~~~~~~~~--~~~~----------~~---T~~gnp  351 (474)
T PLN02482        289 MTGFRIAYGGAQEYFGITPDLTTL--GKVIGGGLPVGAYGGRREIMEMVAPAG--PMYQ----------AG---TLSGNP  351 (474)
T ss_pred             ccCeecCcchHhHHhCCCCCEEEe--cchhhCCCceEEEEEcHHHHHhhccCC--Cccc----------cc---CcchhH
Confidence            8632110  1  111234788766  499987777899999999988765311  1111          11   223456


Q ss_pred             HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCCceeEEEEcCC-CC---------C-
Q 015729          254 QLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFSDTVTAVIVPS-HI---------N-  318 (401)
Q Consensus       254 ~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~-~~---------~-  318 (401)
                      ..+++..++++.+.+.   +..++..++.+++++.|+++    |+++....   ..+ ++.+.+.+ .+         + 
T Consensus       352 l~~aAala~L~~l~~~---~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~---v~g-~~gi~f~~~~~~~~~~~~~~d~  424 (474)
T PLN02482        352 LAMTAGIHTLKRLQQP---GTYEYLDKITKKLIQGILEAGKKAGHEMCGGY---ISG-MFGFFFTEGPVYNFADAKKSDT  424 (474)
T ss_pred             HHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcc---cce-EEEEEEecCCccChhhhccCCH
Confidence            6677788888888654   37778888888888888875    33333211   122 33344311 10         1 


Q ss_pred             --HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          319 --SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       319 --~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                        ...+.+.|+++ ||.+.+.....     ++ +...+|++|||+++++++++++++
T Consensus       425 ~~~~~~~~~l~~~-Gv~~~~~~~~~-----~~-psl~ht~~dId~~l~al~~~l~~~  474 (474)
T PLN02482        425 AKFARFHRGMLEE-GVYLAPSQFEA-----GF-TSLAHTEEDIDFTIAAAERVLARI  474 (474)
T ss_pred             HHHHHHHHHHHHC-CeEEeccCCCC-----Cc-CCCCCCHHHHHHHHHHHHHHHHhC
Confidence              23567777776 99987643221     12 455789999999999999998754

>PRK07046 aminotransferase; Validated

Probab=99.79  E-value=1.8e-16  Score=152.41  Aligned_cols=292  Identities=14%  Similarity=0.086  Sum_probs=189.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcchHHHHHHHH-Hc----------CC
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQFSLLWIDQQQ-RL----------NF  108 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~-~~----------g~  108 (401)
                      +...++.+.|.+.++.   +.+.|+++||+|++.+++.  .....++|+....+||+.....+.. ..          |.
T Consensus       115 ~~~~~lAe~l~~~~~~---~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~  191 (453)
T PRK07046        115 EDAAWVGEELARRFGL---PYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQ  191 (453)
T ss_pred             HHHHHHHHHHHHHhCC---CEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCC
Confidence            4556788888887743   3599999999999998843  3344578888888888864111111 00          11


Q ss_pred             ------cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHhhhcCCCcEEEEeccc
Q 015729          109 ------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVS  178 (401)
Q Consensus       109 ------~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~  178 (401)
                            .+..+  +.+   |++.+++.+..   +++.+|++.......|.+.+    ++++.++|++  +|+++|.||++
T Consensus       192 ~~~~~~~~~~~--~~n---d~~~l~~~l~~---~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~--~g~llI~DEV~  261 (453)
T PRK07046        192 VHDLTATTRVV--EFN---DLAALEAALAD---GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRR--YGTLLVIDETH  261 (453)
T ss_pred             CccccCceEee--CCC---CHHHHHHHhCC---CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHH--hCCEEEEEccc
Confidence                  11111  111   78999998853   46889999988888888876    7889999999  99999999998


Q ss_pred             c----cCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHH
Q 015729          179 S----ICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQ  254 (401)
Q Consensus       179 ~----~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  254 (401)
                      .    .|... ..-...+|+++++  |.++|+.++|.+.+++++.+.+.........       ..+  ....+++.++.
T Consensus       262 tfr~g~Gg~~-~~~gv~PDi~t~g--K~lggG~Pi~av~g~~~i~~~~~~~~~~~~~-------~~~--~~~~T~~gnpl  329 (453)
T PRK07046        262 TISSGPGGYT-RAHGLEPDFLVVG--KPIAGGVPCAVYGFSAELAERAQAAKASAPP-------GHS--GIGTTLSANAL  329 (453)
T ss_pred             cCccCCcchh-HHhCCCccceeeh--hhhcCCCcceeeeehHHHHHHHhhccccCCC-------CCc--eeCCCCcccHH
Confidence            5    33221 1112347888765  9998888899999999998877532110000       000  01113446677


Q ss_pred             HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCCceeEEEEcC-CCC----------C-
Q 015729          255 LLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFSDTVTAVIVP-SHI----------N-  318 (401)
Q Consensus       255 ~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~-~~~----------~-  318 (401)
                      .+++..++++.+.+++   ..++..+..++|++.|+++    ++.....    ..+.++.+.+. +..          + 
T Consensus       330 ~~aa~~a~L~~l~~~~---~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~----g~G~~~~i~~~~~~~~~~~~~~~~~~~  402 (453)
T PRK07046        330 AMAAMRATLAEVMTEA---AYAHMLALAARLAAGLRAVIARHGLPWHVT----RVGARVEFQFAPTPPRNGAEAAAALDP  402 (453)
T ss_pred             HHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHhCCCCeEEE----EeCcEEEEEEeCCCCCCHHHHhcccCH
Confidence            7888889998886643   5677777788888888763    3332221    12234445441 111          1 


Q ss_pred             --HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          319 --SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       319 --~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                        ...+...|.++ ||.+.+.     ++.+++++  .+|++|+|+++++++++++++
T Consensus       403 ~~~~~~~~~~~~~-Gv~~~~~-----~~~~~~~p--~~t~~did~~~~~~~~~l~~~  451 (453)
T PRK07046        403 ELEAALHLYLLNR-GVLITPF-----HNMMLVCP--ATTAADVDRLVAAFDACLGEL  451 (453)
T ss_pred             HHHHHHHHHHHHC-CCEEecc-----cCcEEEeC--CCCHHHHHHHHHHHHHHHHHH
Confidence              12455556665 9987642     34577765  389999999999999999764

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.78  E-value=5.8e-16  Score=152.79  Aligned_cols=299  Identities=12%  Similarity=0.092  Sum_probs=207.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC--
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--  118 (401)
                      ...+.+.++..|+.||++..  .++++|+|.+|.+++.+.+.+||+|++.-++|-|..  ......|+++++++...+  
T Consensus       194 ~G~i~eAe~~aA~~fgAd~t--yfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~--~aLilsga~PVYl~P~~n~~  269 (713)
T PRK15399        194 TGPHLEAEEYIARTFGAEQS--YIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLA--HLLMMSDVVPIWLKPTRNAL  269 (713)
T ss_pred             ChHHHHHHHHHHHHhCCCcE--EEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHH--HHHHHcCCeeEEeccccccc
Confidence            45678999999999999874  577899999999999999999999999999998876  346678999999875432  


Q ss_pred             ---CCCCh-----HHHHHHHhccCC-CCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcc--e-e-
Q 015729          119 ---EGAKL-----DVLASKLAADTA-HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI--D-F-  185 (401)
Q Consensus       119 ---~~~d~-----~~le~~~~~~~~-~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~--~-~-  185 (401)
                         +.+++     +.+++++++++. ++|+.++++++ +.-|.++++++|++.|.-  .  +|++|+||+....  + + 
T Consensus       270 Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~~I~~~~g~--~--~ilvDEAhgah~~F~p~~~  344 (713)
T PRK15399        270 GILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQTLDV--P--SIHFDSAWVPYTHFHPIYQ  344 (713)
T ss_pred             CCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHHHHHHHhCC--C--EEEEeccchhhhhcCcccC
Confidence               23455     899999987653 35678888876 678999999999999832  1  4579999874221  1 1 


Q ss_pred             --ccCcc--cceEE---EecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHH
Q 015729          186 --RMDEW--GIDVA---LTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYG  258 (401)
Q Consensus       186 --~~~~~--~~di~---~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a  258 (401)
                        .....  +.|..   +.|.||++.+....+++.++..+              +.......+..  +.+.+|+...+++
T Consensus       345 ~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~v--------------d~~~~n~a~~m--~~STSPsY~LmAS  408 (713)
T PRK15399        345 GKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEY--------------DEETFNEAFMM--HTSTSPSYPIVAS  408 (713)
T ss_pred             CcChhhCCCCCCeeeeeeeehhccccccchheeeeecCCC--------------CHHHHHHHHHH--HcCCCcHHHHHHH
Confidence              11111  45766   89999999888888888775431              11111111111  1234688888889


Q ss_pred             HHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHc-C------CccccCC-------------Cc------------cCC
Q 015729          259 LRAALDLIFE-EGLENVIERHRRLGKATRLAVEAW-G------LKNCTQK-------------EE------------WFS  305 (401)
Q Consensus       259 ~~~al~~~~~-~g~~~~~~~~~~~~~~l~~~L~~~-g------~~~~~~~-------------~~------------~~~  305 (401)
                      +..+...+.. .| ++..++..+.+..+++.+.++ +      ++++.++             +.            ...
T Consensus       409 LD~a~~~m~~~~G-~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lD  487 (713)
T PRK15399        409 VETAAAMLRGNPG-KRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLD  487 (713)
T ss_pred             HHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccCC
Confidence            9999888874 45 678888888888899888875 3      3333210             00            113


Q ss_pred             ceeEEEEcC----------CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          306 DTVTAVIVP----------SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       306 ~~~~~~~~~----------~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      +.-+.+..|          .|+++..+.+.|.++ ||.+....    ...+-+-+....+++++++++++|.+.-
T Consensus       488 P~KltI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~-gI~~E~~d----~~~vL~l~s~g~t~~~~~~L~~aL~~f~  557 (713)
T PRK15399        488 PVKVTILTPGMDEQGNMSEEGIPAALVAKFLDER-GIVVEKTG----PYNLLFLFSIGIDKTKAMGLLRGLTEFK  557 (713)
T ss_pred             CceEEEEecCcccccccccCCCCHHHHHHHHHHc-CCEEEecC----CCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            334444443          267888999999654 99876442    2233333444569999999999998763

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.78  E-value=2e-16  Score=151.98  Aligned_cols=301  Identities=15%  Similarity=0.167  Sum_probs=187.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--C--------C---C-CCeEEEEcCCcchHHHHHHHHHcC
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--L--------S---P-GDRIISFLIGQFSLLWIDQQQRLN  107 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~--------~---~-gd~vl~~~~~~~~~~~~~~~~~~g  107 (401)
                      +...++.++|.++.+.+.-..+.|++||++|++.++.-.  .        .   + ..+|+....+||+.....+....+
T Consensus        92 ~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~  171 (443)
T PRK08297         92 VEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNT  171 (443)
T ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCC
Confidence            445567777777763222245999999999999988432  1        1   1 257999999999886433222111


Q ss_pred             Cc----------EEEEeCCC------CCC---C------ChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHH
Q 015729          108 FN----------VDVVESDW------GEG---A------KLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSK  158 (401)
Q Consensus       108 ~~----------~~~v~~~~------~~~---~------d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~  158 (401)
                      -.          ...++...      +..   .      +++++++.+.+.+ +++.++++.......|.+.+    +++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~iAavI~EPi~g~~G~~~pp~~yl~~  250 (443)
T PRK08297        172 DPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHP-HDIACFIAEPIQGEGGDNHFRPEFFAA  250 (443)
T ss_pred             cccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCC-CcEEEEEEccccCCCCCcCCCHHHHHH
Confidence            00          00011000      000   0      2456667776544 57899999988888888753    788


Q ss_pred             HHHHhhhcCCCcEEEEecccccC-cc--ee--ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccc
Q 015729          159 VRKLLDEYRHPALFLVDGVSSIC-AI--DF--RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD  233 (401)
Q Consensus       159 i~~l~~~~~~~~~li~D~a~~~~-~~--~~--~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~  233 (401)
                      |.++|++  +|+++|.||++... -.  .+  +.....+|+++++  |.+  +. .|++ ..++..+.........    
T Consensus       251 lr~lc~~--~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--K~l--~~-~a~l-~~~~i~~~~~~~~~~~----  318 (443)
T PRK08297        251 MRELCDE--HDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAFG--KKT--QV-CGIM-AGRRVDEVEDNVFAVS----  318 (443)
T ss_pred             HHHHHHH--cCCEEEEechhhccCccchHHHHHhcCCCCCEEEec--ccc--cc-ccee-cchHHHHhhhhhccCc----
Confidence            9999999  99999999998632 21  11  1122358988875  876  22 2444 4444322111000000    


Q ss_pred             hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEE
Q 015729          234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAV  311 (401)
Q Consensus       234 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~  311 (401)
                               ...+.+++.++..+++..++++.+.++   +..++..++.+++++.|+++  .++.... .....+.++.+
T Consensus       319 ---------~~~~~T~~gnpl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~~~-~vrg~G~~~~i  385 (443)
T PRK08297        319 ---------SRINSTWGGNLVDMVRARRILEVIEED---GLVENAARQGEYLLARLEELAAEFPAVVS-NVRGRGLMCAF  385 (443)
T ss_pred             ---------cccCCCCCccHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHCCCcce-eeeccceEEEE
Confidence                     001123345667778888888888765   36777888888888888775  2332210 11134567778


Q ss_pred             EcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          312 IVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       312 ~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ++++......+.+.|.++ ||.+.+..    ...+||.+...+|++|+|+++++++++++++
T Consensus       386 ~~~~~~~~~~~~~~l~~~-Gvl~~~~~----~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~  442 (443)
T PRK08297        386 DLPTTADRDEVIRRLWEE-GVLVLPCG----ERSIRFRPALTVTTEEIDAAIDALRRALPEV  442 (443)
T ss_pred             EecCHHHHHHHHHHHHHC-CEEEecCC----CCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence            885432345788888865 99986531    3579998888899999999999999998765

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=99.77  E-value=7.2e-17  Score=137.43  Aligned_cols=345  Identities=16%  Similarity=0.204  Sum_probs=238.6

Q ss_pred             CCCCCCcccccCCCcCChHHHHHHHccCc------------CCCCCccHHHHHHHHHHHHHHHhcCCCCceEEe-cCChh
Q 015729            4 MYAPGKNHLFVPGPVHIPDQVIRAMNRNN------------EDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLI-PTTGT   70 (401)
Q Consensus         4 ~~~~~~~~~~~~~p~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~-~~g~t   70 (401)
                      +.+|++..+|++||..+|..|+..+++..            .+|++..+..++.+.+..++++++.++...++| .+|||
T Consensus         2 ~~a~~~vvnFaaGPAklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt   81 (370)
T KOG2790|consen    2 MDAPERVVNFAAGPAKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGT   81 (370)
T ss_pred             CCCccceeecCCCcccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCc
Confidence            56799999999999999999988877722            236778888999999999999999997766766 56777


Q ss_pred             HHHHHHHhccC--CCCCeEEEEcCCcchHHHHHHHHHcCC-cEEEEeCC---CCCCCChHHHHHHHhccCCCCceEEEEE
Q 015729           71 GAWESALTNTL--SPGDRIISFLIGQFSLLWIDQQQRLNF-NVDVVESD---WGEGAKLDVLASKLAADTAHTIKAICIV  144 (401)
Q Consensus        71 ~a~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~g~-~~~~v~~~---~~~~~d~~~le~~~~~~~~~~~~~i~~~  144 (401)
                      ....++..++.  +.|+..--+..|.+|.-...-+..+|. +.+..+..   .+..+|++.++-.-      +-+.+++|
T Consensus        82 ~qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~~~~------da~yvyyC  155 (370)
T KOG2790|consen   82 GQFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKKYGTPNIVIPKLKSYTYGKVPDPSTWELNP------DASYVYYC  155 (370)
T ss_pred             ccccccchhhhccccCCccceEEeccccHHHHHHHHhhCCceEEeccccccccCcCCChhhcccCC------CccEEEEe
Confidence            66655555543  455322222234565543344555554 34443332   12345666555322      23688999


Q ss_pred             ecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhcc
Q 015729          145 HNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKT  224 (401)
Q Consensus       145 ~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~  224 (401)
                      ...+..|+-.+--.   +-  .++|.+++.|-.+-+.+.++|+.+  .+++....+|.+ |+.|+-+++++++++.+...
T Consensus       156 aNETVHGVEf~~~P---~~--~~~~~vlVaDmSSnflSrpvDvsk--~gvi~aGAQKN~-G~aG~Tvvivr~dllg~~~~  227 (370)
T KOG2790|consen  156 ANETVHGVEFDFIP---VN--DPKGAVLVADMSSNFLSRPVDVSK--FGVIFAGAQKNV-GPAGVTVVIVRKDLLGNALD  227 (370)
T ss_pred             cCceeeceecCCCC---CC--CCCCceEEEecccchhcCCccchh--cceEEecccccc-CccccEEEEEehhhhccccc
Confidence            88888888764322   11  248999999999888888999886  567888999998 69999999999999776543


Q ss_pred             CCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 015729          225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAW-GLKNCTQKEE  302 (401)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~  302 (401)
                      .  ....++++.+.    ...+..+|+|+.+++.+...++++.+.| ++...+...+.++.+.+.+.+- |+-..+.++.
T Consensus       228 ~--tP~v~dyk~~~----~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~  301 (370)
T KOG2790|consen  228 I--TPSVLDYKIMD----KNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPS  301 (370)
T ss_pred             C--Cccccceeeec----cccccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCeEEcccchh
Confidence            2  22233333222    2345677899999999999999998776 8888888889999999999986 7776666666


Q ss_pred             cCCceeEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          303 WFSDTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       303 ~~~~~~~~~~~~~-~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .+|-.-+.|++.+ +++ +++.+...++ +..-..|.-  .=+.+|-|.+..++-++++++++-+++..+.
T Consensus       302 ~RS~MNV~Fri~~d~Le-~eFLkeA~~~-~mv~LKGhR--SVGGiRASlYNAisv~~~q~L~~~m~~F~k~  368 (370)
T KOG2790|consen  302 VRSRMNVPFRIEKDELE-AEFLKEAAKE-HMVQLKGHR--SVGGIRASLYNAISVEEVQKLAAFMKEFQKK  368 (370)
T ss_pred             hhhhcccceeecchHHH-HHHHHHHHHh-hhhcccccc--ccccchhhhhccccHHHHHHHHHHHHHHHHh
Confidence            6666666677632 222 2333333334 322122211  1245899999999999999999999988764

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.76  E-value=1.5e-18  Score=156.43  Aligned_cols=251  Identities=18%  Similarity=0.141  Sum_probs=171.9

Q ss_pred             ChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH-
Q 015729           20 IPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL-   98 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~-   98 (401)
                      ..+++++++.+.......|..++...++++.+++++|.+.   .+|+++||.|+.+++++.++|++.|++..++|.... 
T Consensus         7 ~~~~m~~a~~~a~~gd~~Yg~D~~~~~l~~~i~~l~g~e~---a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E   83 (290)
T PF01212_consen    7 PTPAMLEAMAAANVGDDAYGEDPTTARLEERIAELFGKEA---ALFVPSGTMANQLALRAHLRPGESVICADTAHIHFDE   83 (290)
T ss_dssp             S-HHEEHHHHHTTSB-CCTTSSHHHHHHHHHHHHHHTSSE---EEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSS
T ss_pred             CCHHHHHHHHccccCCcccCCChhHHHHHHHHHHHcCCCE---EEEeCCCChHHHHHHHHHHhcCCceeccccceeeeec
Confidence            5677888886655444467778899999999999999976   679999999999999998899999999988766554 


Q ss_pred             HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCC--CCceEEEEEecCCCc-ccccc---hHHHHHHhhhcCCCcEE
Q 015729           99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA--HTIKAICIVHNETAT-GVTNN---LSKVRKLLDEYRHPALF  172 (401)
Q Consensus        99 ~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~--~~~~~i~~~~~~n~t-G~~~~---l~~i~~l~~~~~~~~~l  172 (401)
                      ........|++++.++.+.++.+|++++++.+.+...  .++++|+++++++.. |.+++   +++|.++|++  +|+.+
T Consensus        84 ~ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~--~gl~l  161 (290)
T PF01212_consen   84 TGAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELARE--HGLPL  161 (290)
T ss_dssp             TTHHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHH--HT-EE
T ss_pred             cchhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHh--CceEE
Confidence            3334466899999999887688999999999987432  368899999887753 77776   5567888888  99999


Q ss_pred             EEeccccc------CcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhh-cCC
Q 015729          173 LVDGVSSI------CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYN-LGT  245 (401)
Q Consensus       173 i~D~a~~~------~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~  245 (401)
                      +.|++--+      +....+.. .++|++.+|++|.++.+.| ++|+++++++++....        .+.....+. .| 
T Consensus       162 hmDGARl~~a~~~~~~~~~e~~-~~~D~v~~~~tK~~g~~~G-avl~~~~~~i~~~~~~--------~k~~gg~~~~~G-  230 (290)
T PF01212_consen  162 HMDGARLANAAAALGVSLAEIA-AGADSVSFGGTKNGGAPGG-AVLAGNKEFIAKARRQ--------RKRLGGGMRQAG-  230 (290)
T ss_dssp             EEEETTHHHHHCHHHHHHHHHH-TTSSEEEEETTSTT-SSSE-EEEEESHHHHHHHHHH--------HHHHTHHHHHTT-
T ss_pred             EEehhhHHHhhhcccccHHHHh-hhCCEEEEEEEcccccccc-eEEEechHHHHHHHHH--------HHHhccCeeecc-
Confidence            99987421      11112222 4799999999998865554 9999999975543321        000001111 11 


Q ss_pred             CCCCCCcHHHHHHH-----HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCcccc
Q 015729          246 FWPYTPSIQLLYGL-----RAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCT  298 (401)
Q Consensus       246 ~~~~~~~~~~~~a~-----~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~  298 (401)
                             .   .++     ..++..+ + .......+..+.++.+.+.|+.++..+..
T Consensus       231 -------~---~~a~~~~~~~~l~~l-~-~~~~~~~~~~~~A~~La~~l~~~~~~~~~  276 (290)
T PF01212_consen  231 -------V---LAAAELYQFAALRAL-E-LWLERARHANAMAKRLAAGLEALGGVLPR  276 (290)
T ss_dssp             -------H---HHHHHHHHHHHHCHE-E-CSHHHHHCHHHHHHCHHHCHHEECEEEET
T ss_pred             -------e---eeeechhhHHHHHHH-H-hhHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence                   1   111     1111111 1 12456677788899999999888765443

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.76  E-value=7.2e-16  Score=150.97  Aligned_cols=282  Identities=13%  Similarity=0.073  Sum_probs=186.0

Q ss_pred             CCCcccccCCCcCChHHHHHHHccCcCC-----CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--
Q 015729            7 PGKNHLFVPGPVHIPDQVIRAMNRNNED-----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--   79 (401)
Q Consensus         7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--   79 (401)
                      |++.+..-++|..++.-+-+.+....+.     ..++....+..++-+.+++++|.+.. +-++|+|||.|+..++..  
T Consensus        83 P~ry~ghm~~~~~~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~~-~G~~TsGGT~ANl~aL~~AR  161 (608)
T TIGR03811        83 AGRYWGHMNSETLMPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKNG-WGHIVADGSLANLEGLWYAR  161 (608)
T ss_pred             ccceEEECcCCCCHHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCCC-CeEEeCChHHHHHHHHHHHH
Confidence            3344444445544443333433332211     23566667788999999999998764 367899999998865522  


Q ss_pred             -cC------CC-------------------------------------------CC------eEEEEcCCcchHHHHHHH
Q 015729           80 -TL------SP-------------------------------------------GD------RIISFLIGQFSLLWIDQQ  103 (401)
Q Consensus        80 -~~------~~-------------------------------------------gd------~vl~~~~~~~~~~~~~~~  103 (401)
                       ..      +.                                           |.      +++++...|+|.  .+.+
T Consensus       162 ~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~--~KAa  239 (608)
T TIGR03811       162 NIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSW--LKAA  239 (608)
T ss_pred             HhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHH--HHHH
Confidence             10      00                                           00      456666666665  4778


Q ss_pred             HHcCC---cEEEEeCCCCCCCChHHHHHHHhccC--CCCceEEEEEecCCCcccccchHHHHHHhhh-cCCCc--EEEEe
Q 015729          104 QRLNF---NVDVVESDWGEGAKLDVLASKLAADT--AHTIKAICIVHNETATGVTNNLSKVRKLLDE-YRHPA--LFLVD  175 (401)
Q Consensus       104 ~~~g~---~~~~v~~~~~~~~d~~~le~~~~~~~--~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~-~~~~~--~li~D  175 (401)
                      ...|+   +++.|+++.++++|+++|++.+++..  +..+-+|+.+.+++.+|.+.|+++|.++|++ ..+|+  |+|+|
T Consensus       240 ~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVD  319 (608)
T TIGR03811       240 DIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVD  319 (608)
T ss_pred             HHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeee
Confidence            88888   69999999999999999999997531  1234567888889999999999999999943 12776  79999


Q ss_pred             cccccCc--ceec--------------------c----------------CcccceEEEecCCCcccCCCcceEEEecHH
Q 015729          176 GVSSICA--IDFR--------------------M----------------DEWGIDVALTGSQKALSLPTGMGIVCASPK  217 (401)
Q Consensus       176 ~a~~~~~--~~~~--------------------~----------------~~~~~di~~~s~~K~l~g~~g~G~l~~~~~  217 (401)
                      +|++...  +..+                    +                .-.++|.++..+||++..|.++|.+++++.
T Consensus       320 AAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~  399 (608)
T TIGR03811       320 AAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDI  399 (608)
T ss_pred             ccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCH
Confidence            9988532  1111                    0                013689999999999999999998888876


Q ss_pred             HHHHhccCCCCccccchHHHHHHhhcCCC-CCCCCcHHHHHHHHHHHHHH--HHhcHHHHHHHHHHHHHHHHHHHHHcC
Q 015729          218 ALEASKTAKSVRVFFDWKDYIKFYNLGTF-WPYTPSIQLLYGLRAALDLI--FEEGLENVIERHRRLGKATRLAVEAWG  293 (401)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~a~~~al~~~--~~~g~~~~~~~~~~~~~~l~~~L~~~g  293 (401)
                      .........+.+.+..-.....  ..|.+ .-++.+-...++++.+++.+  ...|+.++.++..++++++.+.|++.+
T Consensus       400 ~~~~~~~~~a~Yl~~~~~~~p~--~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~  476 (608)
T TIGR03811       400 RMRDVISYFATYVFEKGADIPA--LLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLE  476 (608)
T ss_pred             HHHHHHhcCcchhccccccCcc--cccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5433322222211110000000  00111 11123335567888999887  677899999999999999999998853

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=99.76  E-value=3.5e-16  Score=139.29  Aligned_cols=320  Identities=16%  Similarity=0.079  Sum_probs=210.6

Q ss_pred             cCChHHHHHHHccCcCC--CC-CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcC
Q 015729           18 VHIPDQVIRAMNRNNED--YR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLI   92 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~   92 (401)
                      ...+|.|.+++.++...  |. .-.....+.++.+.|...+-.+-. .++|+++|++|+++++.-  .....-.++....
T Consensus        65 GHchP~v~~a~~kQl~~l~H~t~~~~~~pi~~~Ae~L~s~~P~~l~-~vfF~nsGsEANelal~mar~Yt~~~diIa~r~  143 (442)
T KOG1404|consen   65 GHCHPDVVAAAVKQLKKLYHTTSGYLNPPIHDLAEALVSKLPGDLK-VVFFVNSGSEANELALKMARLYTGNLDIIARRN  143 (442)
T ss_pred             CCCChHHHHHHHHhhhhhEEeeccccCCcHHHHHHHHHHhCCCCce-EEEEecCCchHHHHHHHHHHHhcCCceEEEeec
Confidence            45667788887775532  21 112233455666777766654432 389999999999998732  2333347888888


Q ss_pred             CcchHHHHHHHHHcCCcEEEEeCC-----------CC---CCC-----------ChHHHHHHHhccCCCCceEEEEEecC
Q 015729           93 GQFSLLWIDQQQRLNFNVDVVESD-----------WG---EGA-----------KLDVLASKLAADTAHTIKAICIVHNE  147 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v~~~-----------~~---~~~-----------d~~~le~~~~~~~~~~~~~i~~~~~~  147 (401)
                      +||+..... +...+.....-+.+           ++   +.+           -.+++++.+..+..+++.+++...++
T Consensus       144 ~YHG~t~~t-~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIq  222 (442)
T KOG1404|consen  144 SYHGNTLYT-LGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQ  222 (442)
T ss_pred             cccCCchhh-cccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhc
Confidence            898876322 11122222221111           10   000           12456666655555678899999999


Q ss_pred             CCcccccc----hHHHHHHhhhcCCCcEEEEecccccCcc---eeccCcccceEEEecCCCcccCCCcceEEEecHHHHH
Q 015729          148 TATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE  220 (401)
Q Consensus       148 n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~  220 (401)
                      ...|.+.+    +++..++|++  +|.++|.|++++....   .+.++..++.--+-+..|.++.+.++|.++.++++.+
T Consensus       223 GvgG~v~~p~GYlka~~~~v~k--~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGnG~Pl~AVvtt~EIa~  300 (442)
T KOG1404|consen  223 GVGGIVELPPGYLKAAYKVVRK--RGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGNGFPLGAVVTTPEIAD  300 (442)
T ss_pred             cCCccccCCchHHHHHHHHHHH--cCCEEEehhhhhccccccccccccccCCCccHHHHHhhccCCCcceeeecCHHHHH
Confidence            88888864    7899999999  9999999999874332   2455555554344455699988889999999999988


Q ss_pred             HhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCcccc
Q 015729          221 ASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCT  298 (401)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~  298 (401)
                      -+.....                 .++.+..++...++-.++++.++++   ++.++..+...+|.+.|.++  ..++..
T Consensus       301 v~~~~~~-----------------~fnTyggnP~a~avg~aVL~Vikee---~LqE~aa~vG~yl~~~l~~l~d~h~iIG  360 (442)
T KOG1404|consen  301 VLNQKSS-----------------HFNTYGGNPVACAVGLAVLKVIKEE---NLQENAAEVGSYLLEKLAALKDKHPIIG  360 (442)
T ss_pred             HHHhccc-----------------cccccCCCchhHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHhhcCCcee
Confidence            7765421                 2233445555667777888888774   68888899999999999986  677766


Q ss_pred             CCCccCCceeEEEEcCCC----C-C----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHH
Q 015729          299 QKEEWFSDTVTAVIVPSH----I-N----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGV  366 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~----~-~----~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i  366 (401)
                      .-.  ..+.++.+++=+.    . .    ...+-+.+++. |+.|..|  ...|+.+||.+.-.+|++|+|.+++..
T Consensus       361 dVR--G~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~-Gvlvg~g--~i~G~vfriaPPlciT~edi~f~~~~~  432 (442)
T KOG1404|consen  361 DVR--GRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKEL-GVLVGKG--GIHGNVFRIAPPLCITKEDIDFAVEYF  432 (442)
T ss_pred             ecc--cceeEEEEEEecccCCCCCcchHHHHHHHHHHHHh-Ceeeecc--cccceEEEecCCeeccHHHHHHHHHHH
Confidence            432  3555666665111    1 1    12355566655 9998444  344779999998899999998877755

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.76  E-value=7.4e-16  Score=147.97  Aligned_cols=294  Identities=15%  Similarity=0.165  Sum_probs=179.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--CC------C------CCeEEEEcCCcchHHHHHHHHHcC
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LS------P------GDRIISFLIGQFSLLWIDQQQRLN  107 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~~------~------gd~vl~~~~~~~~~~~~~~~~~~g  107 (401)
                      ....++.++|++....+.-+.+.|+++|++|++.++...  ..      .      +.+|+....+||+.....+.. .|
T Consensus        85 ~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~-~~  163 (431)
T TIGR03251        85 VAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSL-TN  163 (431)
T ss_pred             HHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhc-cC
Confidence            444566666776653222245899999999999988431  11      1      367999999999876332221 11


Q ss_pred             Cc-EE----------EEeCC-------CCC-C-------CChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hH
Q 015729          108 FN-VD----------VVESD-------WGE-G-------AKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LS  157 (401)
Q Consensus       108 ~~-~~----------~v~~~-------~~~-~-------~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~  157 (401)
                      .. ..          .++..       ... .       -+++++++.+.... +++.++++.......|.+.+    ++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~iAavivEPv~g~~G~~~~~~~~l~  242 (431)
T TIGR03251       164 TDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERP-HDIACFIAEPIQGEGGDNHFRPEFLR  242 (431)
T ss_pred             CccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCC-CcEEEEEEeccccCCCCcCCCHHHHH
Confidence            10 00          01110       000 0       02445566665433 57899999999888898763    78


Q ss_pred             HHHHHhhhcCCCcEEEEecccc-cCcc----eeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCcccc
Q 015729          158 KVRKLLDEYRHPALFLVDGVSS-ICAI----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF  232 (401)
Q Consensus       158 ~i~~l~~~~~~~~~li~D~a~~-~~~~----~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~  232 (401)
                      +|.++|++  +|+++|+|++++ +|..    .++.....+|+++++  |.+  + ..|++..+ +..+.........   
T Consensus       243 ~l~~lc~~--~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~g--K~~--~-~~g~~~~~-~i~~~~~~~~~~~---  311 (431)
T TIGR03251       243 AMRALCDE--HDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFG--KKT--Q-VCGIMAGR-RVDEVADNVFAVP---  311 (431)
T ss_pred             HHHHHHHH--cCCEEEEecchhccCccchHHHHHhcCCCCCEEEec--ccC--c-cceEEecc-hHHHhhhhcccCc---
Confidence            89999999  999999999987 3321    122223458998876  654  2 23555443 3211111000000   


Q ss_pred             chHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCc-cccCCCccCCceeE
Q 015729          233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLK-NCTQKEEWFSDTVT  309 (401)
Q Consensus       233 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~-~~~~~~~~~~~~~~  309 (401)
                             .. .++  +++.++..+++..++++.+.+++   ..++..++.+++.+.|+++  ... +...  ....+.++
T Consensus       312 -------~~-~~~--T~~gnpl~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~i~~--vrg~G~~~  376 (431)
T TIGR03251       312 -------SR-LNS--TWGGNLVDMVRATRILEIIEEER---LVDNARVQGAHLLARLHELAAEFPHLVSN--PRGRGLMC  376 (431)
T ss_pred             -------cc-cCC--CCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCccceec--ccccceeE
Confidence                   00 011  23456677888899999887765   4556666667777777664  232 2221  11235677


Q ss_pred             EEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          310 AVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       310 ~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      .+++++......+.+.|+++ ||.+.+.    ....+|+++...+|++|+|++++++++
T Consensus       377 ~i~~~~~~~~~~~~~~l~~~-Gvl~~~~----g~~~lr~~P~l~~t~~eid~~l~~l~~  430 (431)
T TIGR03251       377 AFDLPSTADRDEVIRQLYRE-GVLLLGC----GERSIRFRPPLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             EEEeCCHHHHHHHHHHHHhC-CeEEecC----CCCeEEEECCccCCHHHHHHHHHHHHh
Confidence            78875432345688888866 9998643    135799999889999999999999875

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.76  E-value=1.3e-16  Score=134.39  Aligned_cols=274  Identities=15%  Similarity=0.122  Sum_probs=186.0

Q ss_pred             ceEEecCChhHHHHHHHhccCCCC-CeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCce
Q 015729           61 TPFLIPTTGTGAWESALTNTLSPG-DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIK  139 (401)
Q Consensus        61 ~~i~~~~g~t~a~~~~~~~~~~~g-d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~  139 (401)
                      +.+.+..|+-+.+.++++..+.|| ++|+...| .+|.+. --+...+++++.++.+++.+++.|++.+.+..+  +++|
T Consensus        87 dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPP-tysMY~-v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~d--s~iK  162 (375)
T KOG0633|consen   87 DNICVGVGSDELIDLIIRCVCDPGKEKILDCPP-TYSMYV-VDAAINDAEVVKVPLNPDFSLNVDAIAEVLELD--SKIK  162 (375)
T ss_pred             cceEEecCcHHHHHHHHhheecCCccceeecCC-cceeEE-EEeecCCceEEEecCCCCccccHHHHHHHHhcc--ccce
Confidence            448899999999999999999999 66766655 455541 124557899999999999999999999998765  3799


Q ss_pred             EEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcc----eeccCcccceEEEecCCCcccCCCcc--eEEE
Q 015729          140 AICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI----DFRMDEWGIDVALTGSQKALSLPTGM--GIVC  213 (401)
Q Consensus       140 ~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~----~~~~~~~~~di~~~s~~K~l~g~~g~--G~l~  213 (401)
                      .++++.|.||||.....+.|.++.+. +.|.++++|+|+--++-    ..-..++..-++.-+.+|.+ |..|+  |+-+
T Consensus       163 ~~F~tSPgNPtg~~ik~~di~KiLe~-p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivlqTlSKsf-GLAGiRvG~~~  240 (375)
T KOG0633|consen  163 CIFLTSPGNPTGSIIKEDDILKILEM-PDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVLQTLSKSF-GLAGIRVGYGA  240 (375)
T ss_pred             EEEEcCCCCCCcccccHHHHHHHHhC-CCCcEEEEeeeeEeeccccccchHhHhCCceeehhhhhhhc-CcceeEeeccc
Confidence            99999999999999999999998884 56899999999753322    11123344567777889988 56664  8888


Q ss_pred             ecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhc---HHHHHHHHHHHHHHHHHHHH
Q 015729          214 ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG---LENVIERHRRLGKATRLAVE  290 (401)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g---~~~~~~~~~~~~~~l~~~L~  290 (401)
                      .+.++.+.+...+++                    .+.+.   ++..+|++.+....   ++..+....+.+.++...|.
T Consensus       241 ~~~~ia~iln~~KaP--------------------YNiS~---~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt  297 (375)
T KOG0633|consen  241 FPLSIAEILNRAKAP--------------------YNISV---AGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELT  297 (375)
T ss_pred             ccHHHHHHHHhccCC--------------------ccccc---hhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhh
Confidence            888887766544332                    12222   24455555554332   55666666666777777777


Q ss_pred             Hc-CCccccCCCccCCceeEEEEcCCCCC--HHHHHHHHHhhCCeEEccC-CCCCCCcEEEEeecccCCHHHHHHHHHHH
Q 015729          291 AW-GLKNCTQKEEWFSDTVTAVIVPSHIN--SSEIVRRAWQRYNLSLGLG-LNKVAGKVFRIGHLGHLNELQLLGCLAGV  366 (401)
Q Consensus       291 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~L~~~~~i~v~~g-~~~~~~~~~Ri~~~~~~~~~di~~~~~~i  366 (401)
                      ++ ++.-..  .+..++ ++.+++.++-+  +..+...+..++||.|+-. ....-.+++||+ .+  |.|+-+.+++.+
T Consensus       298 ~v~~~~~~~--gg~daN-FiLi~v~~~~n~~akkly~q~at~~gVvVRfrgse~~c~G~lRit-vG--t~EentvL~k~~  371 (375)
T KOG0633|consen  298 EVPFLNDYP--GGSDAN-FILIEVTGGDNGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRIT-VG--TPEENTVLMKCL  371 (375)
T ss_pred             cCccccCCC--Cccccc-EEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcCCccccceeEEEE-cC--CcccchHHHHHH
Confidence            75 333111  112343 55567743321  2334444555679998744 223235789994 44  677777788777


Q ss_pred             HHH
Q 015729          367 EMI  369 (401)
Q Consensus       367 ~~~  369 (401)
                      ++.
T Consensus       372 K~~  374 (375)
T KOG0633|consen  372 KQF  374 (375)
T ss_pred             Hhh
Confidence            654

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=99.75  E-value=8.3e-17  Score=144.48  Aligned_cols=316  Identities=15%  Similarity=0.135  Sum_probs=201.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc----cCC----CC-----CeEE-EEcCCcchHHHHHHHHH
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN----TLS----PG-----DRII-SFLIGQFSLLWIDQQQR  105 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~----~~~----~g-----d~vl-~~~~~~~~~~~~~~~~~  105 (401)
                      +.-...++..++.++.|++...+-+|++||+-++..++..    .+.    .|     +-|+ ++..+|+|..  +.+..
T Consensus       139 F~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~--kaAa~  216 (510)
T KOG0629|consen  139 FVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIK--KAAAF  216 (510)
T ss_pred             EEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHH--HHHHH
Confidence            3334557888889999998754478888888776655422    111    11     2233 3344666654  55555


Q ss_pred             cC---CcEEEEeCCCCCCCChHHHHHHHhccC--CCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEeccccc
Q 015729          106 LN---FNVDVVESDWGEGAKLDVLASKLAADT--AHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI  180 (401)
Q Consensus       106 ~g---~~~~~v~~~~~~~~d~~~le~~~~~~~--~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~  180 (401)
                      +|   -+++.|++++.+.+++++||+++.+..  +..|..+-.+...+..|...|++.|+++|++  |++|+++|+|.+.
T Consensus       217 lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k--~~lWmHvDAAwGG  294 (510)
T KOG0629|consen  217 LGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEK--HKLWMHVDAAWGG  294 (510)
T ss_pred             hccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHh--cCEEEEeeccccc
Confidence            66   489999999999999999999987633  1236666777778889999999999999999  9999999999887


Q ss_pred             CcceeccC------cccceEEEecCCCcccCCCcceEEEecHHH-HHHhccCCCCccccchHHHH-------HHhhcCCC
Q 015729          181 CAIDFRMD------EWGIDVALTGSQKALSLPTGMGIVCASPKA-LEASKTAKSVRVFFDWKDYI-------KFYNLGTF  246 (401)
Q Consensus       181 ~~~~~~~~------~~~~di~~~s~~K~l~g~~g~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~  246 (401)
                      |.+.....      -..++.+.+++||+++.+..|+....+.+- +.++.++.+.+.+.+-+.+.       +.+..|+ 
T Consensus       295 glLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGR-  373 (510)
T KOG0629|consen  295 GLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGR-  373 (510)
T ss_pred             ccccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCc-
Confidence            65432111      125789999999999888888887776554 56666665544443322222       2333342 


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCC----C-H-
Q 015729          247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHI----N-S-  319 (401)
Q Consensus       247 ~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~----~-~-  319 (401)
                         -.++   .-++..++.=...|+++...++.++++++.+.|++. +++.+....+.+.+.-+| .+|..+    . . 
T Consensus       374 ---h~D~---FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw-~vp~~lR~~~~~~e  446 (510)
T KOG0629|consen  374 ---HVDV---FKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFW-YVPPSLRGWQENPE  446 (510)
T ss_pred             ---cccH---HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeec-cCchHhccCcccch
Confidence               1222   223333333234569999999999999999999998 655544322223332222 233211    1 1 


Q ss_pred             ---------HHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecc-cCCHHHHHHHHHHHHHH
Q 015729          320 ---------SEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLG-HLNELQLLGCLAGVEMI  369 (401)
Q Consensus       320 ---------~~l~~~L~~~~~i~v~~g~~~~--~~~~~Ri~~~~-~~~~~di~~~~~~i~~~  369 (401)
                               ..+-.++.++.-..  .++.+.  .++.+|..+.+ .++++|+|.+++.|...
T Consensus       447 ~~~rL~kVaPkIK~~Mm~~Gt~M--i~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerl  506 (510)
T KOG0629|consen  447 RDSRLVKVAPKIKERMMKKGTTM--IGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERL  506 (510)
T ss_pred             hhhHHHhhCcHHHHHHHhcccee--eEecccccccchhheecccchhhhhhHHHHHHHHHHh
Confidence                     12333344442222  223332  34568886655 67899999999998765

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.75  E-value=1.1e-15  Score=138.13  Aligned_cols=319  Identities=15%  Similarity=0.097  Sum_probs=205.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEe-cCChhHH---HHHHHhccC-C----CCCeEEEEcCCcchHHHHHHHHHcCCcE
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLI-PTTGTGA---WESALTNTL-S----PGDRIISFLIGQFSLLWIDQQQRLNFNV  110 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~-~~g~t~a---~~~~~~~~~-~----~gd~vl~~~~~~~~~~~~~~~~~~g~~~  110 (401)
                      ..+++.+|++.|.++.|.+.   +.+ .+.|+++   -.+++.+.. .    ..+.+++++..|-.+ . ..+...|.++
T Consensus       107 ~l~li~~Lq~~L~~ITG~Da---vsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTN-P-ASAam~G~~V  181 (496)
T COG1003         107 YLELIYELQEWLKEITGMDA---VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTN-P-ASAAMAGFKV  181 (496)
T ss_pred             HHHHHHHHHHHHHHhcCCce---eeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCC-h-hhHhhcCceE
Confidence            45668899999999999886   433 3344432   223444432 1    235678887754433 2 3467789999


Q ss_pred             EEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccccc-chHHHHHHhhhcCCCcEEEEecccccCcc-eeccC
Q 015729          111 DVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN-NLSKVRKLLDEYRHPALFLVDGVSSICAI-DFRMD  188 (401)
Q Consensus       111 ~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~-~l~~i~~l~~~~~~~~~li~D~a~~~~~~-~~~~~  188 (401)
                      +.|++++++.+|+++|++++.+    ++.++++++|++ .|... ++.+|.++.++  +|..|..|+|---+.+ -....
T Consensus       182 V~V~~~~~G~VDlddLk~k~~~----~~AalMiTnPsT-~GvFE~~I~ei~~ivH~--~Gg~vY~DGANlNA~vG~~rPG  254 (496)
T COG1003         182 VVVKCDENGNVDLDDLRAKAED----NLAALMITNPST-LGVFEEDIREICEIVHE--AGGQVYYDGANLNAIVGLARPG  254 (496)
T ss_pred             EEEecCCCCCccHHHHHHHhcc----ceeEEEeccCcc-cccchhhHHHHHHHHHH--cCCEEEecCcchhhhhcccccc
Confidence            9999999999999999999984    568999998765 56665 68999999999  9999999988532111 12445


Q ss_pred             cccceEEEecCCCcccCC-----CcceEEEecHHHHHHhccC----CCCccccchHHHHHHhhcCCCCCCCCcHHHHHHH
Q 015729          189 EWGIDVALTGSQKALSLP-----TGMGIVCASPKALEASKTA----KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGL  259 (401)
Q Consensus       189 ~~~~di~~~s~~K~l~g~-----~g~G~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~  259 (401)
                      ++|+|+.-+..||+|+.|     +|.|-+.++..+..-++..    ....+..+.... +.......+.++.+++  .-.
T Consensus       255 d~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~-~s~g~~~a~~Gs~~il--~~a  331 (496)
T COG1003         255 DMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGK-KSIGVSAAPYGSASIL--PIA  331 (496)
T ss_pred             ccccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCC-ccceeeccccCcchHH--HHH
Confidence            678999999999999654     6788999987765544431    111101110000 0011111122333332  222


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCC-ceeEEEE-c--CCCCCHHHHHHHHHhhCCeEEc
Q 015729          260 RAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS-DTVTAVI-V--PSHINSSEIVRRAWQRYNLSLG  335 (401)
Q Consensus       260 ~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~-~~~~~~~-~--~~~~~~~~l~~~L~~~~~i~v~  335 (401)
                      ++=+.....+|+++.-+...-++.|+.+.|+. .+++.-.....+. -.++..+ +  ..|++..+++++|.+- |+.-.
T Consensus       332 ~~YI~~mG~~GL~~ase~AvLNANYia~rL~~-~y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~-GfHaP  409 (496)
T COG1003         332 WAYIRMMGADGLKQASEVAVLNANYIARRLKG-YYPVPYTGENRVAHECILDARPLKKETGVRALDVAKRLLDY-GFHAP  409 (496)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh-cCccccCCCCcceeEEEeechHhHhhcCCcHHHHHHHHHhc-CCCCC
Confidence            33344455667888889999999999999987 3444322111111 1122222 1  1368899999999975 77643


Q ss_pred             cCCCCC-CCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          336 LGLNKV-AGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       336 ~g~~~~-~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                      ..+++. -.+.+=|-+....+++++|++++++.++.++...
T Consensus       410 T~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~  450 (496)
T COG1003         410 TMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEADA  450 (496)
T ss_pred             cccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            334431 2445666666677899999999999999877644

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.74  E-value=1.1e-15  Score=146.30  Aligned_cols=275  Identities=15%  Similarity=0.127  Sum_probs=174.8

Q ss_pred             ceEEecCChhHHHHHHHhcc--C-C-----------------------CC---CeEEEEcCCcchHHHHHHHHHc-----
Q 015729           61 TPFLIPTTGTGAWESALTNT--L-S-----------------------PG---DRIISFLIGQFSLLWIDQQQRL-----  106 (401)
Q Consensus        61 ~~i~~~~g~t~a~~~~~~~~--~-~-----------------------~g---d~vl~~~~~~~~~~~~~~~~~~-----  106 (401)
                      +.+.|++||++|++.++.-.  . +                       +|   .+|+....+||+.....+....     
T Consensus       123 ~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~  202 (464)
T TIGR00699       123 DQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIH  202 (464)
T ss_pred             CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCcccc
Confidence            45999999999999988431  1 0                       11   2799999999988743332111     


Q ss_pred             --CC---cEEEEeCCCC-CC-------------CChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHh
Q 015729          107 --NF---NVDVVESDWG-EG-------------AKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLL  163 (401)
Q Consensus       107 --g~---~~~~v~~~~~-~~-------------~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~  163 (401)
                        +.   ....++.+.. ..             -+++.+++.+++.. +++.+|++.......|.+.+    ++++.++|
T Consensus       203 ~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc  281 (464)
T TIGR00699       203 KLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWH-KPVAAIIVEPIQSEGGDNHASPDFFRKLRDIT  281 (464)
T ss_pred             ccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcC-CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHH
Confidence              10   1122222210 00             13566788886533 46899999999888899887    89999999


Q ss_pred             hhcCCCcEEEEecccccCcc---eeccC--cc--cceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHH
Q 015729          164 DEYRHPALFLVDGVSSICAI---DFRMD--EW--GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKD  236 (401)
Q Consensus       164 ~~~~~~~~li~D~a~~~~~~---~~~~~--~~--~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~  236 (401)
                      ++  +|+++|+|+++.....   .+..+  ..  .+|+++++  |.+++.   |++..+ +.   +....  .       
T Consensus       282 ~~--~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~g--K~lg~g---G~~~~~-~~---~~~~~--~-------  341 (464)
T TIGR00699       282 KK--HNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFS--KKFQTA---GYFFHD-PA---FRPNK--P-------  341 (464)
T ss_pred             HH--cCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEeh--hhhccC---Cccccc-hh---ccCCC--C-------
Confidence            99  9999999999863221   11111  22  38887775  988311   333332 21   11100  0       


Q ss_pred             HHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCc-cccCCCccCCceeEEEEc
Q 015729          237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLK-NCTQKEEWFSDTVTAVIV  313 (401)
Q Consensus       237 ~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~-~~~~~~~~~~~~~~~~~~  313 (401)
                          +..++  ++..++..+++..++++.+.+++   ..++..+..+++++.|+++  .+. .+..-.....+.++.+++
T Consensus       342 ----~~~~~--T~~gnp~~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~  412 (464)
T TIGR00699       342 ----YRQFN--TWMGDPSRALILREIIQEIKRKD---LLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDT  412 (464)
T ss_pred             ----ccccc--CCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEec
Confidence                00111  33466677788888999887654   6667777788888888875  244 222111002466777887


Q ss_pred             CCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          314 PSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       314 ~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      ++......+.+.++++ |+.+...    ..+.+||.+...+|++|+|+++++|++++
T Consensus       413 ~~~~~~~~i~~~~~~~-Gvl~~~~----g~~~ir~~Ppl~it~~eid~~~~~l~~~~  464 (464)
T TIGR00699       413 PDEAKRDKLLKKARNN-GVNIGGC----GVKAIRLRPMLVFQKHHADIFLEIISKII  464 (464)
T ss_pred             CCHHHHHHHHHHHHHC-CcEEecC----CCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            5422256788888876 9988643    23689999998999999999999998763

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.73  E-value=3.8e-15  Score=133.74  Aligned_cols=338  Identities=16%  Similarity=0.122  Sum_probs=205.7

Q ss_pred             CCCCCCCcccccCCCcCChHHHHHHHccCcCCC----CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            3 YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDY----RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         3 ~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~----~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      |.++...-..-+.|+.  .|++.+++.+.....    ..+...+ .-++.+.+.+.++....+.+.|+++||+|++.++.
T Consensus        58 yiD~~ssw~~~~~Gha--npev~ral~~q~~k~~hs~~~~~t~e-av~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK  134 (433)
T KOG1401|consen   58 YIDFTSSWAVTILGHA--NPEVARALAEQAKKLGHSSNGYFTLE-AVELEEVLSAVLGKGSAERVFFCNSGTEANETALK  134 (433)
T ss_pred             eeeeccceeccccCCC--CHHHHHHHHHHHhhheeccCccccHH-HHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHH
Confidence            4444554444455555  888999998865432    1222223 66788888888877777789999999999999883


Q ss_pred             c---cC---CCCC--eEEEEcCCcchHHHHHHHHHcCCcE----------EEEeCCCCCCCChHHHHHHHhccCCCCceE
Q 015729           79 N---TL---SPGD--RIISFLIGQFSLLWIDQQQRLNFNV----------DVVESDWGEGAKLDVLASKLAADTAHTIKA  140 (401)
Q Consensus        79 ~---~~---~~gd--~vl~~~~~~~~~~~~~~~~~~g~~~----------~~v~~~~~~~~d~~~le~~~~~~~~~~~~~  140 (401)
                      .   +.   .+.+  +++...++||+.....+.. .+...          .++...++   |..++++.+.... ..+.+
T Consensus       135 ~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~-~~~s~y~~~~~p~~p~v~~~~yn---d~t~l~k~~~~h~-~~IaA  209 (433)
T KOG1401|consen  135 FARKFTGKKHPEKKTKFIAFENSYHGRTLGALSV-TGNSKYGLPFDPIAPDVVTAEYN---DSTALEKLFESHK-GEIAA  209 (433)
T ss_pred             HHHHhhcccCCccceeEEEEecCcCCcchhHHHh-hcccccCCCCCCCCCceeecccC---CHHHHHHHHHhCC-CceEE
Confidence            2   11   1222  4999999999876433321 12211          22222222   7899999998754 35899


Q ss_pred             EEEEecCCCcccccc----hHHHHHHhhhcCCCcEEEEecccccCcc-ee----ccCcccceEEEecCCCcccCCCcceE
Q 015729          141 ICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-DF----RMDEWGIDVALTGSQKALSLPTGMGI  211 (401)
Q Consensus       141 i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~-~~----~~~~~~~di~~~s~~K~l~g~~g~G~  211 (401)
                      +++.......|..+.    +..+++.|++  +|+++|.|+.+..... -.    ..-...+||++..  |.++|+.++|.
T Consensus       210 VIvEPiqGaGG~~p~~peFl~~L~k~C~~--~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~a--K~L~gGlPigA  285 (433)
T KOG1401|consen  210 VIVEPIQGAGGIIPADPEFLIGLRKECDD--NGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITTVA--KPLGGGLPIGA  285 (433)
T ss_pred             EEEecccCCCCcccCCHHHHHHHHHHHhh--cCceEEeehhhhCccccchHHHHHHhCcCCcceeeh--hhccCCceeEE
Confidence            999999988888874    5679999999  9999999999874221 11    1112347877765  99988888999


Q ss_pred             EEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 015729          212 VCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA  291 (401)
Q Consensus       212 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~  291 (401)
                      ..++++..+.+.+...             +..|+  .++-+++.+.+...+++.+.+.   ..+++..+..+.|++.+.+
T Consensus       286 ~~v~~kV~~~i~~~~~-------------l~hg~--Tf~gnpLacsa~~~~l~~l~~~---e~~k~vs~~~k~L~~~l~e  347 (433)
T KOG1401|consen  286 TGVRDKVAEMISPGDH-------------LYHGG--TFSGNPLACSAGIKVLDELKDP---ETLKNVSKIGKELRKLLDE  347 (433)
T ss_pred             EeehHHHHhhcCCCCc-------------cccCc--ccCCChhhhhHHHHHHHHHcCH---HHHHHHHHHHHHHHHHHHH
Confidence            9999999998876432             11243  3344556666777788877764   3556666666666666666


Q ss_pred             cCCccccC-CCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEee--c--ccCCHHHHHHHHHHH
Q 015729          292 WGLKNCTQ-KEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGH--L--GHLNELQLLGCLAGV  366 (401)
Q Consensus       292 ~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~--~--~~~~~~di~~~~~~i  366 (401)
                      ...+.... .....++.++.+.+...  ...+....++. +..+..+........+|+.+  .  ...+.|+++++++++
T Consensus       348 ~~~~~~~~i~g~~grgl~ig~~~~~p--~~~~~d~~~~~-~ll~~~~~~~~~~~gv~i~P~~~l~~~~~~E~i~~~l~i~  424 (433)
T KOG1401|consen  348 YLKKTPNSICGGVGRGLVIGFEFEGP--VYKFADAAREQ-GLLILTLGKGLLEEGVRIAPIYLLTVEHTPEVIQRLLTIL  424 (433)
T ss_pred             HhccCCCceeeeeeeEEEEEEEEeec--hhhhhhhhhhh-hHHHHHHhcccccceEEEeccccccccCcHHHHHHHHHHH
Confidence            31111111 11123444555544211  11111111111 11111111001112344443  1  123588999999999


Q ss_pred             HHHHHhc
Q 015729          367 EMILKDV  373 (401)
Q Consensus       367 ~~~l~~~  373 (401)
                      .+++.++
T Consensus       425 ~~~l~~~  431 (433)
T KOG1401|consen  425 EKVLSAL  431 (433)
T ss_pred             HHHHHHh
Confidence            9998765

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.73  E-value=3.7e-15  Score=128.17  Aligned_cols=293  Identities=13%  Similarity=0.087  Sum_probs=177.9

Q ss_pred             HHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHhcc---CCCC--CeEEEE-cCCcchHHHHHHHHHcCCcEEE
Q 015729           40 VPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNT---LSPG--DRIISF-LIGQFSLLWIDQQQRLNFNVDV  112 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~-~~~~i~~~~g~t~a~~~~~~~~---~~~g--d~vl~~-~~~~~~~~~~~~~~~~g~~~~~  112 (401)
                      ...++..+...+.+-+|+. .++++.+|+|+..|...+..-+   ...|  ++|+.+ .|+|.++.  ...-.   .-.+
T Consensus        76 ~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~--d~~l~---~d~f  150 (417)
T COG3977          76 KAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYA--DAGLE---EDLF  150 (417)
T ss_pred             hhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhcccc--ccccC---ccce
Confidence            4456778888888888886 4466999999888877654222   2234  345554 45555443  11111   1111


Q ss_pred             EeC------CCC----CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEEEEecccc
Q 015729          113 VES------DWG----EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSS  179 (401)
Q Consensus       113 v~~------~~~----~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li~D~a~~  179 (401)
                      |..      .+.    .++|.+.++-  .    +++.+|.++-|.||||.+..   +.++.+++++  ||+++|+|.|++
T Consensus       151 Vs~kP~iel~~~g~FKY~vDF~~l~i--~----e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~--~giPliIDnAYg  222 (417)
T COG3977         151 VSAKPNIELLPAGQFKYHVDFEHLHI--G----ESTGAICVSRPTNPTGNVLTDEELAKLDALARQ--HGIPLIIDNAYG  222 (417)
T ss_pred             eeccCCcccccccceeeccCHHHccc--c----cccceEEecCCCCCCCCcccHHHHHHHHHHhhh--cCCcEEEecccC
Confidence            221      112    3457766552  3    46789999999999999985   5566777888  999999999988


Q ss_pred             cCcceeccCc----cc-ceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHH
Q 015729          180 ICAIDFRMDE----WG-IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQ  254 (401)
Q Consensus       180 ~~~~~~~~~~----~~-~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  254 (401)
                      ......-+.+    |+ .-+.+.|.+|.-..+..||+++.+++++..+..+..--.          +..|.     ... 
T Consensus       223 ~PFP~iifsd~~~~w~~NiilC~SLSK~GLPG~R~GIiIane~viqaitnmn~iis----------Lap~~-----~G~-  286 (417)
T COG3977         223 VPFPGIIFSDATPLWNENIILCMSLSKLGLPGSRCGIIIANEKVIQAITNMNGIIS----------LAPGR-----MGP-  286 (417)
T ss_pred             CCCCceecccccccCCCCEEEEeehhhcCCCCcceeEEEccHHHHHHHHhccceee----------ecCCC-----ccH-
Confidence            6533322222    33 357788999943223457999999999887765532100          11111     111 


Q ss_pred             HHHHHHHHHHHHHHhcHH-----HHHHHHHHHHHHHHHHHHH-c---CCccccCCCccCCceeEEEEcCC-CCCHHHHHH
Q 015729          255 LLYGLRAALDLIFEEGLE-----NVIERHRRLGKATRLAVEA-W---GLKNCTQKEEWFSDTVTAVIVPS-HINSSEIVR  324 (401)
Q Consensus       255 ~~~a~~~al~~~~~~g~~-----~~~~~~~~~~~~l~~~L~~-~---g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~  324 (401)
                        +-+.   +.+++..+.     -++--++...+...+.|++ +   .+.+..+++    ..+.|+.+.+ .++..++.+
T Consensus       287 --Aia~---~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~iHkpEG----AIFlWLWf~dLPItt~~LYq  357 (417)
T COG3977         287 --AIAA---EMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEG----AIFLWLWFKDLPITTEELYQ  357 (417)
T ss_pred             --HHHH---HHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCccceeeecCCc----ceeehhhhccCCCCHHHHHH
Confidence              1111   222221111     1222344555555555554 3   444444432    2455555532 467889999


Q ss_pred             HHHhhCCeEEccCCCCC---------CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          325 RAWQRYNLSLGLGLNKV---------AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       325 ~L~~~~~i~v~~g~~~~---------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +|+.+ |+.+.||...+         ...++|++...  +++.+++.+.+|.+..+++
T Consensus       358 ~LKa~-Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~--~~~~ie~Gva~lae~ve~~  412 (417)
T COG3977         358 RLKAR-GVLMVPGHYFFPGLDKEWPHTHQCMRMNYVP--EPEKIEKGVAILAEEVERA  412 (417)
T ss_pred             HHHhC-eEEEecccccCCCCCCCCCCccceEEEecCC--CHHHHHHHHHHHHHHHHHH
Confidence            99876 99999995422         34569998877  8899999999998877653

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.73  E-value=3.8e-15  Score=138.70  Aligned_cols=299  Identities=13%  Similarity=0.072  Sum_probs=174.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc---CCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEe
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT---LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVE  114 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~---~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~  114 (401)
                      ..+.+-|++.+++++.|.+-.. ..+..++|.+-++++.+.   -++.++|+++...|+.+.  ....+...|++++.++
T Consensus       108 ~Lq~lfe~Qs~i~eLTGmdvaN-aSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~  186 (429)
T PF02347_consen  108 RLQALFEYQSMICELTGMDVAN-ASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVP  186 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTSSEE--SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-
T ss_pred             HHHHHHHHHHHHHHhhCCCccC-CCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEec
Confidence            3455779999999999998432 456778887777655432   233468999998887765  3345666899999999


Q ss_pred             CCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccC-cceeccCcccce
Q 015729          115 SDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSIC-AIDFRMDEWGID  193 (401)
Q Consensus       115 ~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~-~~~~~~~~~~~d  193 (401)
                      .+.++..|        +    +++.++++.+|+ ..|.+.++++|.+++|+  +|.++++ .+-... ..-..+.++|+|
T Consensus       187 ~~~~~~~d--------~----~~~a~v~vq~Pn-~~G~~ed~~~i~~~~h~--~gal~~~-~ad~~aL~~l~~Pge~GAD  250 (429)
T PF02347_consen  187 LDEDGTTD--------D----DDTAAVMVQNPN-TFGVFEDIKEIADIAHA--AGALVIV-GADPNALGGLKSPGEYGAD  250 (429)
T ss_dssp             BBTTCSB---------S----TTEEEEEEESS--TTSB--THHHHHHHHHH--TT-EEEE-CGGCCGCCTC--GGGGT-S
T ss_pred             ccccCCcc--------c----cCeEEEEeecCC-CCceEeeHHHHHHHHHH--cCCEEEE-ecCHHHHhCcCChhhcCcc
Confidence            88776555        2    467888888775 68999999999999999  9999887 543211 122345678999


Q ss_pred             EEEecCCCcccCC-----CcceEEEecHHHHHHhccCCCC---------cc--ccchHHHHHHhhcCCCCCCCCcHHHHH
Q 015729          194 VALTGSQKALSLP-----TGMGIVCASPKALEASKTAKSV---------RV--FFDWKDYIKFYNLGTFWPYTPSIQLLY  257 (401)
Q Consensus       194 i~~~s~~K~l~g~-----~g~G~l~~~~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~  257 (401)
                      |++.+ +|.|+.|     +++|++.+++++.+.++.....         .+  ..+-.++..+.++.+++..|...+...
T Consensus       251 I~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~  329 (429)
T PF02347_consen  251 IVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLAL  329 (429)
T ss_dssp             EEEEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHH
T ss_pred             EEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHH
Confidence            99666 7777543     5689999999988887765421         11  122345566667776444444443333


Q ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEcc
Q 015729          258 GLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGL  336 (401)
Q Consensus       258 a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~  336 (401)
                      .+..=+..+-.+|++++.++...++.++++.|.+. +..+.  ... ....++ ... ......++.++.... |+... 
T Consensus       330 ~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~--~~~-f~e~v~-~~~-~~~~~~~l~~~~~~~-gl~~~-  402 (429)
T PF02347_consen  330 AAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPFD--NPF-FFEFVV-VFS-KDKEVEELLKRGIEG-GLNLR-  402 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSS--SSS-BSSEEE-EES-S-HHHHHHHHTT-----EEEG-
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC--CCC-ceeeee-ecC-CcHHHHHHHHHHHhc-CCCcc-
Confidence            33333345567789999999999999999999986 33322  222 222222 222 221222333333322 43332 


Q ss_pred             CCCCCCCcEEEEeecccCCHHHHHHHHHHH
Q 015729          337 GLNKVAGKVFRIGHLGHLNELQLLGCLAGV  366 (401)
Q Consensus       337 g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i  366 (401)
                         ....+.+-+++....|++|||.+++++
T Consensus       403 ---~~~~~~~li~~TE~~t~edid~lv~~f  429 (429)
T PF02347_consen  403 ---YPDDGALLICVTETRTKEDIDRLVEAF  429 (429)
T ss_dssp             ---GG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred             ---ccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence               223447888888889999999999864

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=99.72  E-value=4.5e-15  Score=128.04  Aligned_cols=354  Identities=15%  Similarity=0.115  Sum_probs=240.1

Q ss_pred             CcccccCCCcCChHHHHHHHccCc--------CCC-CC-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNN--------EDY-RS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~--------~~~-~~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      ..|+.+..=...|+.+.+.+....        ..| .+ ..+...-.-+...++.+.|....+ +.+.++-|.-+...+.
T Consensus        68 ~iYlcGNSLGLmPK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~il~l~~~iVGA~e~E-vavmNsLTvNlh~Ll~  146 (465)
T KOG3846|consen   68 VIYLCGNSLGLMPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPILPLLAPIVGAQENE-VAVMNSLTVNLHSLLI  146 (465)
T ss_pred             eEEEeccccccCchhhHhHHHHHHHHHHhhhhhcccccccceeecchhhhhhhhhhccCCchh-hhhHhhhhhHHHHHHH
Confidence            455555555556665555444421        112 11 223333445667788999998755 8888999988998888


Q ss_pred             ccCCCCC---eEEEEcCCcchHH--HHHHHHHcCCcEE----EEeCCCC-CCCChHHHHHHHhccCCCCceEEEEEecCC
Q 015729           79 NTLSPGD---RIISFLIGQFSLL--WIDQQQRLNFNVD----VVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNET  148 (401)
Q Consensus        79 ~~~~~gd---~vl~~~~~~~~~~--~~~~~~~~g~~~~----~v~~~~~-~~~d~~~le~~~~~~~~~~~~~i~~~~~~n  148 (401)
                      ++.+|..   +|+...-.++|-+  ....++.-|+++.    .++..++ ..+.-+++-+.+.++. +.+.+++++.++.
T Consensus       147 sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkng-DeiA~v~fSGvqy  225 (465)
T KOG3846|consen  147 SFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKNG-DEIALVCFSGVQY  225 (465)
T ss_pred             HhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccccccchhHHHHHHHHHhcC-CeEEEEEeeccee
Confidence            9988764   4666665555544  3456676776432    2222221 2344566666676665 5789999999999


Q ss_pred             CcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCC-cceEEEecHHHHHHhccCCC
Q 015729          149 ATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPT-GMGIVCASPKALEASKTAKS  227 (401)
Q Consensus       149 ~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~-g~G~l~~~~~~~~~~~~~~~  227 (401)
                      .||...++.+|...-+.  .|+++=.|-||+.|..+.....||+|+.+++++|++++++ |+|-+++..+......+...
T Consensus       226 YTGQ~Fdi~aIT~Agq~--kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCSYKYlnaGaGgIgGlFvHekh~~~~~prl~  303 (465)
T KOG3846|consen  226 YTGQYFDIGAITFAGQF--KGCLVGFDLAHAVGNVPLQLHDWGVDFACWCSYKYLNAGAGGIGGLFVHEKHTKESLPRLA  303 (465)
T ss_pred             ecccccchhhhhhcccC--CCcEechhhhhhhcCCceEEeecCCceEEEeeecccccCCCccceeeeehhhhcchhhHHh
Confidence            99999999999966666  8999999999999999999999999999999999998776 46777777776554444333


Q ss_pred             CccccchHH---HHHHhh--cC--CCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCc----
Q 015729          228 VRVFFDWKD---YIKFYN--LG--TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLK----  295 (401)
Q Consensus       228 ~~~~~~~~~---~~~~~~--~g--~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~----  295 (401)
                      ..+..+...   +.+.++  .|  .+-..+|++....++...++.+.+..+++.+++..-+..|+-..++.. |.+    
T Consensus       304 GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~r  383 (465)
T KOG3846|consen  304 GWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKASKGYKHPLR  383 (465)
T ss_pred             hhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHHHHHhcccCchhh
Confidence            222222111   011111  11  133557999999999999999998878888888888888887777664 433    


Q ss_pred             -------cccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecc-cCCHHHHHHHHHHHH
Q 015729          296 -------NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNELQLLGCLAGVE  367 (401)
Q Consensus       296 -------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~-~~~~~di~~~~~~i~  367 (401)
                             +..+......+--+.+.+..  +...+.+.|.++ |+.+.    ...++.+|+.+.. +++-.|+..+++++.
T Consensus       384 t~Kl~~~IiTP~~~~erGcQLsl~Fss--p~~~vfqeL~kr-Gv~~D----kR~PNvIRvAPvpLYN~f~Dvy~f~n~L~  456 (465)
T KOG3846|consen  384 TEKLFFTIITPTSTDERGCQLSLYFSS--PTPKVFQELHKR-GVIGD----KRRPNVIRVAPVPLYNTFSDVYIFVNALN  456 (465)
T ss_pred             hcceeEEEeCCcccccccceEEEEeCC--CchHHHHHHHHc-Ceecc----ccCCCceEeecchhhccHHHHHHHHHHHH
Confidence                   22222111223344455522  446788888765 88753    3456789998755 889999999999999


Q ss_pred             HHHHhc
Q 015729          368 MILKDV  373 (401)
Q Consensus       368 ~~l~~~  373 (401)
                      +++..+
T Consensus       457 e~~d~~  462 (465)
T KOG3846|consen  457 EAMDKL  462 (465)
T ss_pred             HHHHHh
Confidence            998754

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.70  E-value=1.4e-14  Score=137.44  Aligned_cols=301  Identities=15%  Similarity=0.104  Sum_probs=202.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC---
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG---  118 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~---  118 (401)
                      ..+.|.++..|+.+|.+..  ..+++|+|.|+..++.+.+++||.|++.-++|-|..-+  .-..|+.++++....+   
T Consensus        70 G~i~eAqe~aA~~fgAd~t--yFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~g--lilaGa~Pvyl~p~~np~~  145 (557)
T COG1982          70 GPIKEAQELAARVFGADHT--YFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHG--LILAGATPVYLEPSRNPLY  145 (557)
T ss_pred             ccHHHHHHHHHHHhCCCce--EEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHH--HHHcCCceEEecCCCCccc
Confidence            4478999999999999874  57789999999999999999999999999998887632  5567998988876443   


Q ss_pred             ---CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcc-----eeccCcc
Q 015729          119 ---EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEW  190 (401)
Q Consensus       119 ---~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~-----~~~~~~~  190 (401)
                         +.++.+.+++.+.+.+..+ |+++++++ +..|.++++++|++++++  .+.|+.+|++|....-     +-...+.
T Consensus       146 gi~ggI~~~~~~~~l~~~~~~~-k~~vitnp-TYdGv~~n~~~i~~~~~~--~~a~v~~deah~~~~~~~~~l~~~~~~~  221 (557)
T COG1982         146 GIIGGIPLETFKEALLAHPDAE-KLAVITNP-TYDGVCYNLRKIVELLHH--YGAWVLYDEAHPAHFDFSPMLPESALNG  221 (557)
T ss_pred             cccCCCCHHHHHHHHHhChhhh-eeEEEecC-ccceEeecHHHHHHHHhh--cCceEEhhhcCcccccccccCcchhhhc
Confidence               4679999999887654211 56666654 668999999999999999  9999999999874321     1122235


Q ss_pred             cceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhc
Q 015729          191 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG  270 (401)
Q Consensus       191 ~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g  270 (401)
                      +.|+++-|.||.+++....+.+.+++.  .          ..+.......+..  ..+.+|+...++++..|-......|
T Consensus       222 ~~~~~tqS~HK~l~alSQaS~iHv~~~--~----------~~~~~r~nea~~~--h~STSPsY~l~ASlD~Ar~~~~~~G  287 (557)
T COG1982         222 GADFVTQSTHKLLAALSQASMIHVKDG--R----------AVNHERFNEALMM--HQSTSPSYPLMASLDVARMQEGNAG  287 (557)
T ss_pred             CceEEEechhhhhhhhhhhHHHhhCCC--c----------cCCHHHHHHHHHH--HccCCchHHHHHHHHHHHHhhhhhh
Confidence            789999999999987776677777653  0          0111111111211  1133577777777777555544445


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHc-CCccccCCC---c--------------cCCceeEEEEcC-CCCCHHHHHHHHHh
Q 015729          271 ---LENVIERHRRLGKATRLAVEAW-GLKNCTQKE---E--------------WFSDTVTAVIVP-SHINSSEIVRRAWQ  328 (401)
Q Consensus       271 ---~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~---~--------------~~~~~~~~~~~~-~~~~~~~l~~~L~~  328 (401)
                         ++.......+.++.+++...+. +++++.+..   .              ...+.-+.+..| .|+++..++++|++
T Consensus       288 ~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gipg~~v~~~L~e  367 (557)
T COG1982         288 RELWQEVIDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIPGAIVAKYLRE  367 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccccCCcccccccccccccceeccccEEEEecCCCCCcHHHHHHHHHH
Confidence               2233566667777777777776 566655431   0              012334445544 57899999999988


Q ss_pred             hCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHH
Q 015729          329 RYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVE  367 (401)
Q Consensus       329 ~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~  367 (401)
                      + ||........  ...+-+++....+..+++.+++..+
T Consensus       368 ~-gii~e~~~d~--~~lll~~~~~gk~~~lv~~L~~f~r  403 (557)
T COG1982         368 H-GIIPEETGDY--SNLLLFSPGIGKWQTLVDRLLEFKR  403 (557)
T ss_pred             c-CCeeeecCCc--eeeEEeeeccchHHHHHHHHHHHHH
Confidence            7 6654433221  2334444332345566666666555

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.69  E-value=1.9e-14  Score=145.83  Aligned_cols=326  Identities=15%  Similarity=0.022  Sum_probs=205.4

Q ss_pred             ChHHHHHHHccCcCCCCCc----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc---C----C------
Q 015729           20 IPDQVIRAMNRNNEDYRSP----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT---L----S------   82 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~~~~~----~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~---~----~------   82 (401)
                      ..|++.+++.++.......    ...+...+|-++|.+..+.+.-..++|++||++|++.++.-.   .    .      
T Consensus       383 ~~p~I~~Ai~~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~  462 (817)
T PLN02974        383 LQPELARAVAYAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSG  462 (817)
T ss_pred             CCHHHHHHHHHHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            4677777777755432111    123445567777777433221246999999999999987321   1    1      


Q ss_pred             --------CCCeEEEEcCCcchHHHHHHHHHcCC---------c-----EEEEeCC--------------CCC-------
Q 015729           83 --------PGDRIISFLIGQFSLLWIDQQQRLNF---------N-----VDVVESD--------------WGE-------  119 (401)
Q Consensus        83 --------~gd~vl~~~~~~~~~~~~~~~~~~g~---------~-----~~~v~~~--------------~~~-------  119 (401)
                              ...+|+....+||+.....+.- .+.         .     ..+++.+              ...       
T Consensus       463 ~~~~~~~~~r~kIIa~~gsYHG~T~GAms~-sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~  541 (817)
T PLN02974        463 NEKRGGDLIELKVLALDGSYHGDTLGAMEA-QAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGE  541 (817)
T ss_pred             cccccccCCCCEEEEECCCcCCCCHHHHhh-CCchhhhcccccccccCCCcccCCCccccccccccccCCcccccccccc
Confidence                    1346899999999876432221 110         0     0011100              000       


Q ss_pred             ---------CCC------------hHHHHHHHhc----cCCCCceEEEEEec-CCCcccccc----hHHHHHHhhhcCCC
Q 015729          120 ---------GAK------------LDVLASKLAA----DTAHTIKAICIVHN-ETATGVTNN----LSKVRKLLDEYRHP  169 (401)
Q Consensus       120 ---------~~d------------~~~le~~~~~----~~~~~~~~i~~~~~-~n~tG~~~~----l~~i~~l~~~~~~~  169 (401)
                               .+|            .+.+++.+++    ...+++.++++... +...|++.+    ++.+.++|++  +|
T Consensus       542 ~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~--~g  619 (817)
T PLN02974        542 ETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRS--RK  619 (817)
T ss_pred             ccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHH--hC
Confidence                     001            2456676653    12257889999984 677788875    6889999999  99


Q ss_pred             cEEEEecccccCcc---ee--ccCcccceEEEecCCCcccCC-CcceEEEecHHHHHHhccCCCCccccchHHHHHHhhc
Q 015729          170 ALFLVDGVSSICAI---DF--RMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL  243 (401)
Q Consensus       170 ~~li~D~a~~~~~~---~~--~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (401)
                      +++|.||+......   .+  +.....+|+++++  |.+.|+ .++|.+.+++++.+.+.......          .+.-
T Consensus       620 ilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~~g--KgLtgG~~Plaa~l~~~~I~~~f~~~~~~~----------~~~h  687 (817)
T PLN02974        620 IPVIFDEVFTGLWRLGVESAWELLGCKPDIACYA--KLLTGGLVPLAATLATEEVFEAFRGPSKLD----------ALLH  687 (817)
T ss_pred             CEEEEeecccCCCcccchhhHHhcCCCCCEEeec--ccccCCCCccEEEEEcHHHHHhhccccccC----------Cccc
Confidence            99999999874321   12  2223347888887  999877 47999999999988775211000          0111


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHH-Hc-CCccccCCCccCCceeEEEEcCCCC---
Q 015729          244 GTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVE-AW-GLKNCTQKEEWFSDTVTAVIVPSHI---  317 (401)
Q Consensus       244 g~~~~~~~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~-~~-g~~~~~~~~~~~~~~~~~~~~~~~~---  317 (401)
                      |+  +++.++..+++..++|+.+.+++ .++..++..+..+++.+.|. .+ ..+.+.  +....+.++.+++.+..   
T Consensus       688 g~--Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~--~VRg~Gl~~~iel~~~~~~~  763 (817)
T PLN02974        688 GH--SYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVE--RVVSLGTVLALELDAEGSGS  763 (817)
T ss_pred             CC--CCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCee--EEEeeeeEEEEEEecCCccc
Confidence            32  45677788899999999998765 44556666666677776663 33 333322  12245677778773211   


Q ss_pred             --C---HHHHHHHHH-hhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          318 --N---SSEIVRRAW-QRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       318 --~---~~~l~~~L~-~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                        +   +..+.+.++ ++ ||.+++.     ++.+++.+...+++++++++++++.+.|
T Consensus       764 ~~~~~~a~~v~~~~~~~~-Gl~~r~~-----Gnvi~l~pP~~i~~e~l~~~~~~l~~~~  816 (817)
T PLN02974        764 GYSSLYARSVVRRLRRED-GIYARPL-----GNVVYLMCGPTTSPETCTRLLRKVYRRL  816 (817)
T ss_pred             ccchHHHHHHHHHHHHhC-CEEEEec-----CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence              1   245777777 55 9998753     5789987778899999999999998865

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.69  E-value=2.4e-14  Score=127.53  Aligned_cols=274  Identities=14%  Similarity=0.149  Sum_probs=163.1

Q ss_pred             HHHHHHHccCcCC------CCCccHHHH-HHHHHHHHHHHhcCCCCceEEe--cCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           22 DQVIRAMNRNNED------YRSPAVPAL-TKTLLEDIKKIFKTTSGTPFLI--PTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        22 ~~v~~a~~~~~~~------~~~~~~~~~-~~~l~~~la~~~g~~~~~~i~~--~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      .+|++|+++....      ..+|++.+. .+.+++-.++.+|.+..  ++-  -.|||+|+..++.++++|||+++..+-
T Consensus        27 ~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vfgaE~A--LVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG  104 (403)
T PF06838_consen   27 LKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVFGAEDA--LVRPQFVSGTHAIALALFGVLRPGDELLSITG  104 (403)
T ss_dssp             HHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHCT-SEE--EEETTS-SHHHHHHHHHHHH--TT-EEEESSS
T ss_pred             HHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHhCchhh--hhcccccchHHHHHHHHHhcCCCCCeEEEcCC
Confidence            4678888874321      234555554 55677777999999853  111  348999999999999999999887654


Q ss_pred             CcchHHHHH----------HHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCC----cccccchHH
Q 015729           93 GQFSLLWID----------QQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETA----TGVTNNLSK  158 (401)
Q Consensus        93 ~~~~~~~~~----------~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~----tG~~~~l~~  158 (401)
                      ..+-. ...          .....|+++..|++.+++.+|.+.++++++.    ++|++++--.-..    +=.+.++++
T Consensus       105 ~PYDT-L~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~~----~tk~v~IQRSrGYs~R~sl~i~~I~~  179 (403)
T PF06838_consen  105 KPYDT-LEEVIGIRGNGPGSLKEFGIKYREVPLTEDGTIDWEAIKKALKP----NTKMVLIQRSRGYSWRPSLTIEEIKE  179 (403)
T ss_dssp             S--CC-HHHHHTSSSSSSSSTGGGT-EEEE--B-TTSSB-HHHHHHHHHT----TEEEEEEE-S-TTSSS----HHHHHH
T ss_pred             Cchhh-HHHHhCCCCCCCCChHHhCceeEEEeecCCCCcCHHHHHHhhcc----CceEEEEecCCCCCCCCCCCHHHHHH
Confidence            21211 111          1245789999999999999999999999984    5688887743211    112224666


Q ss_pred             HHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCC--CcceEEEecHHHHHHhccCC-CCccccchH
Q 015729          159 VRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLP--TGMGIVCASPKALEASKTAK-SVRVFFDWK  235 (401)
Q Consensus       159 i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~--~g~G~l~~~~~~~~~~~~~~-~~~~~~~~~  235 (401)
                      +.+++|+.+.++++.+|.+|+-+.........|+|++.+|.-|..+|+  +.-|+++.+++++++..... +++      
T Consensus       180 ~i~~vk~~~p~~iifVDNCYGEFvE~~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~RLTaPG------  253 (403)
T PF06838_consen  180 IIKFVKEINPDVIIFVDNCYGEFVETQEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAYRLTAPG------  253 (403)
T ss_dssp             HHHHHHHH-TTSEEEEE-TTTTTTSSS-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHHHHHS-TT------
T ss_pred             HHHHHHhhCCCeEEEEeCCcceeccccCccccchhheeccceeCCCCCccCcCCEEechHHHHHHHHhhhcCCc------
Confidence            777777778999999999999877777777889999999999999765  22399999999988764321 111      


Q ss_pred             HHHHHhhcCCCCCCCCcHHHHHHHHHHHH-HHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcC
Q 015729          236 DYIKFYNLGTFWPYTPSIQLLYGLRAALD-LIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVP  314 (401)
Q Consensus       236 ~~~~~~~~g~~~~~~~~~~~~~a~~~al~-~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~  314 (401)
                         ..-+.|.    |....     ...++ ++..   .....+..+-+......++++|+++.+.....++..+-.+.+.
T Consensus       254 ---iG~e~G~----t~~~~-----R~~~QGlFlA---P~vV~eAlKgaif~A~~fe~lG~~v~P~~~~~R~DiIQai~l~  318 (403)
T PF06838_consen  254 ---IGKEVGA----TLGTN-----RLMFQGLFLA---PHVVGEALKGAIFAAALFEKLGFEVSPKPDDPRSDIIQAIELG  318 (403)
T ss_dssp             ---TGGGSS------TTTH-----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTT-EEES-TTS--SSS-EEEE-S
T ss_pred             ---ccccccc----CcchH-----HHHHhHHhhc---hHHHHHHHHHHHHHHHHHHHcCCcCCCCCCCCCCceEEEEECC
Confidence               1112232    22221     11121 2222   2455666666677777888899999887666678888889884


Q ss_pred             CCCCHHHHHHHH
Q 015729          315 SHINSSEIVRRA  326 (401)
Q Consensus       315 ~~~~~~~l~~~L  326 (401)
                         +.+.+...|
T Consensus       319 ---~~e~l~~FC  327 (403)
T PF06838_consen  319 ---SPEKLIAFC  327 (403)
T ss_dssp             ---SHHHHHHHH
T ss_pred             ---CHHHHHHHH
Confidence               345444444

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.69  E-value=4e-14  Score=128.17  Aligned_cols=324  Identities=16%  Similarity=0.143  Sum_probs=214.2

Q ss_pred             CcCChHHHHHHHccCcCCC-----CCccH----HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CC--CC
Q 015729           17 PVHIPDQVIRAMNRNNEDY-----RSPAV----PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LS--PG   84 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~-----~~~~~----~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~--~g   84 (401)
                      +..+|+.|...+.+.....     ++++.    .+..-+++..++++.|.+-.. ....-++|.+-++++.+. +.  +.
T Consensus        86 ~~~~P~vI~rnile~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VAN-ASm~DeaTAaAEAm~ma~r~~k~k~  164 (450)
T COG0403          86 DTYTPPVILRNILENPEWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVAN-ASMLDEATAAAEAMLMAKRVTKKKR  164 (450)
T ss_pred             CCcCcHHHHHHhhcCccccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCccc-chhhhhHHHHHHHHHHHHHhhcCcC
Confidence            5556666654666643322     12222    233568999999999998443 556778888888777553 22  35


Q ss_pred             CeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcc-cccchHHHHH
Q 015729           85 DRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATG-VTNNLSKVRK  161 (401)
Q Consensus        85 d~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG-~~~~l~~i~~  161 (401)
                      ++++++...|+...  ....++..|.+++.++.+     |.+++++. +.   ..+..+++.+|+ ..| ...++.+|.+
T Consensus       165 ~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-----d~~~l~~~-~~---~~~~gv~vQyP~-~~G~~~~d~~~l~~  234 (450)
T COG0403         165 NKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-----DLDDLESA-DD---GDVFGVLVQYPN-TFGIVEEDLRALIE  234 (450)
T ss_pred             ceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-----hhhhhhhc-cc---cCeEEEEEecCC-CCCccchhHHHHHH
Confidence            78999999888775  445667778888888766     78888887 43   245677777765 577 6667999999


Q ss_pred             HhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCccc-----CCCcceEEEecHHHHHHhccCCCC--------
Q 015729          162 LLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALS-----LPTGMGIVCASPKALEASKTAKSV--------  228 (401)
Q Consensus       162 l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~-----g~~g~G~l~~~~~~~~~~~~~~~~--------  228 (401)
                      .+|.  ++.++++=.---...+-....++|+||++++.+- |+     |++.+|++.+++++.++.+.+...        
T Consensus       235 ~~h~--~~al~~v~aDplaL~LL~pPGe~GADIvvG~~Qr-fGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~  311 (450)
T COG0403         235 AAHS--AGALVIVAADPLALGLLKPPGEFGADIVVGSAQR-FGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGK  311 (450)
T ss_pred             HHhh--cCCEEEEEechhHhhccCCccccCCceEEecCcc-cCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCC
Confidence            9999  8887776432222223334567899999999886 32     335579999999998888776531        


Q ss_pred             ---ccccchHHHHHHhhcCCCCCCCCcHHH---HHHHHHHHH--HHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCcccc
Q 015729          229 ---RVFFDWKDYIKFYNLGTFWPYTPSIQL---LYGLRAALD--LIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCT  298 (401)
Q Consensus       229 ---~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~a~~~al~--~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~  298 (401)
                         ....+-.+++.+.++.+     ++++.   +.++.+++-  ++..+|++++.++..+++.+++++|.+.  |+++..
T Consensus       312 ~A~rLaLQTREQHIRReKAT-----SNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~  386 (450)
T COG0403         312 RAFRLALQTREQHIRREKAT-----SNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVF  386 (450)
T ss_pred             chhhhhHHHHHHHHhhhccc-----hhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEecc
Confidence               11234456677777776     44432   333333332  3346789999999999999999999975  577765


Q ss_pred             CCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      .  . +-+ -+.++++. .....+..+... .|+-++.-.    ...+-+++....+++||+.+++++...
T Consensus       387 ~--~-fFd-t~~v~~~~-~~~~~l~~~~~~-~G~~L~~~~----~~~~~ia~tEt~t~~~i~~l~~~~~~~  447 (450)
T COG0403         387 D--H-FFD-TFTVRVPE-EVAEALLAAAIA-GGINLRRVD----ADTVLIALTETTTKEDIDALVAAFGGV  447 (450)
T ss_pred             c--c-cee-eEEEecch-hHHHHHHHHHHh-cCCceeeec----CCceEEEeecccCHHHHHHHHHHHhhh
Confidence            3  2 222 23466643 123444444432 366654332    336778777788899999999988754

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.69  E-value=9.1e-15  Score=140.47  Aligned_cols=291  Identities=15%  Similarity=0.126  Sum_probs=168.1

Q ss_pred             HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEE-cCCcchHH-HHH--HHHHcCCc----EEEE
Q 015729           44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISF-LIGQFSLL-WID--QQQRLNFN----VDVV  113 (401)
Q Consensus        44 ~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~-~~~~~~~~-~~~--~~~~~g~~----~~~v  113 (401)
                      ..++.++|.+++..  .+.+.|+++|++|++.++..  ......+|+.. ..++++.. +..  .....+..    ...+
T Consensus        90 ~~~la~~l~~~~p~--~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~  167 (431)
T PRK06209         90 ELDAAESFLELIDG--ADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTV  167 (431)
T ss_pred             HHHHHHHHHHhCCc--cceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhcccc
Confidence            34677778777642  23599999999999998843  22323455554 33343311 100  00001110    0011


Q ss_pred             eCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCccee-ccC---c
Q 015729          114 ESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF-RMD---E  189 (401)
Q Consensus       114 ~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~-~~~---~  189 (401)
                      .+..+   |++++++.+++.. +++.+|++.......+....+++|.++|++  +|+++|+|++|....... ...   .
T Consensus       168 ~~~~~---d~~~l~~~l~~~~-~~~aavi~Epv~g~~~~~~~l~~l~~lc~~--~g~lLI~DEv~tG~~~~~~g~~~~~g  241 (431)
T PRK06209        168 TFRYN---DIASLEALFEDHP-GRIACVILEPATADEPQDGFLHEVRRLCHE--NGALFILDEMITGFRWHMRGAQKLYG  241 (431)
T ss_pred             ccCCC---CHHHHHHHHHhCC-CCEEEEEEccccCCCCCHHHHHHHHHHHHH--cCCEEEEEcccccCCcCcchhhHHhC
Confidence            11221   7899999887533 357777877654432222248999999999  999999999985322110 111   2


Q ss_pred             ccceEEEecCCCcccCCCcceEEEecHHHHHH--hccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHH
Q 015729          190 WGIDVALTGSQKALSLPTGMGIVCASPKALEA--SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF  267 (401)
Q Consensus       190 ~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~  267 (401)
                      ..+|++++  .|.++++.++|.+++++++.+.  +........          +.-++  ++++++..+++..++++.+.
T Consensus       242 v~PDi~t~--gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~----------~~~~~--T~~~np~~~aaa~a~l~~i~  307 (431)
T PRK06209        242 IVPDLSCF--GKALGNGFAVSALAGKREYMELGGLEHTDRERV----------FLLST--THGAETHALAAAIATMAIYR  307 (431)
T ss_pred             CCcceeee--hhhhcCCcccEEEEEHHHHHhhhcccccCCCCc----------eeecc--CCCCCHHHHHHHHHHHHHHh
Confidence            24677665  4999876667999999988765  211100000          00011  34566677889999999987


Q ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCCceeEEEEc--CCCCCHH----HHHHHHHhhCCeEEccC
Q 015729          268 EEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFSDTVTAVIV--PSHINSS----EIVRRAWQRYNLSLGLG  337 (401)
Q Consensus       268 ~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~l~~~L~~~~~i~v~~g  337 (401)
                      +++   ..++..++.+++++.|+++    ++.......  .....+.+..  +.+.+..    .+.+.|.++ ||.+.  
T Consensus       308 ~~~---~~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~p--  379 (431)
T PRK06209        308 DED---VIERLHEQGAKLAAGVNEAAAEHGLQDHVRVS--GRPCCLTYSTLDGNGQPSQAFRTLFLQETIRR-GVLMP--  379 (431)
T ss_pred             ccC---HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEee--cceEEEEEecCCcccCCcHHHHHHHHHHHHHC-Ccccc--
Confidence            754   5666777777777777653    322211100  1111111111  1111112    456667666 88652  


Q ss_pred             CCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          338 LNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       338 ~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                             .++++  ..+|++||++++++++++++++
T Consensus       380 -------~l~is--~~ht~~dId~~l~~l~~~l~~~  406 (431)
T PRK06209        380 -------SLVVS--YAHGDADIERTIDAVHGALGVY  406 (431)
T ss_pred             -------ccccc--ccCCHHHHHHHHHHHHHHHHHH
Confidence                   23444  5689999999999999999875

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.68  E-value=1.2e-13  Score=123.94  Aligned_cols=299  Identities=13%  Similarity=0.088  Sum_probs=168.5

Q ss_pred             cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHH-HHH-hc----cCC--------CCCeEEEEcCCcchHHHHHHHH
Q 015729           39 AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWE-SAL-TN----TLS--------PGDRIISFLIGQFSLLWIDQQQ  104 (401)
Q Consensus        39 ~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~-~~~-~~----~~~--------~gd~vl~~~~~~~~~~~~~~~~  104 (401)
                      +..+.+.|+|+.+++++|.+..+ +++.+|++-.+. -++ .+    ...        +.-+.+++.|||=-+.  .+++
T Consensus        66 G~l~Gipe~r~l~a~llgv~~~~-viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHF--ai~E  142 (425)
T PF12897_consen   66 GGLDGIPEARELFAELLGVPPEN-VIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHF--AITE  142 (425)
T ss_dssp             S-SS--HHHHHHHHHHHTS-GGG-EEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHH--HHHH
T ss_pred             CccCChHHHHHHHHHHhCCCHHH-EEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHH--HHHH
Confidence            55677899999999999998866 777666664432 222 22    111        1236789999866554  6899


Q ss_pred             HcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEec-CCCcccccchHHHHHHhhh--cCCCcEEEEecccccC
Q 015729          105 RLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHN-ETATGVTNNLSKVRKLLDE--YRHPALFLVDGVSSIC  181 (401)
Q Consensus       105 ~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~-~n~tG~~~~l~~i~~l~~~--~~~~~~li~D~a~~~~  181 (401)
                      .+|++.+.||+++++ +|.|.+|+.+.+++  .+|.++.+.- +||||.+++-+-+.+++.-  .-.+..|+.|.||++-
T Consensus       143 ~~Giemi~VpM~~dG-PDmD~Ve~LV~~D~--svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vH  219 (425)
T PF12897_consen  143 HFGIEMIPVPMTEDG-PDMDMVEELVAEDP--SVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVH  219 (425)
T ss_dssp             HCT-EEEEEEEETTE-E-HHHHHHHTHTST--TEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-
T ss_pred             hhCcEEEecCCCCCC-CCHHHHHHHHhcCC--ccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEe
Confidence            999999999999887 69999999998765  7899977744 6999999987777777653  2389999999998766


Q ss_pred             ccee--------cc-------CcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCC
Q 015729          182 AIDF--------RM-------DEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTF  246 (401)
Q Consensus       182 ~~~~--------~~-------~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  246 (401)
                      .+.-        ++       ...+..+.+.|.+|.-..+.|++++..+++-++.+....            ..-..|  
T Consensus       220 hL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~~------------~~~tIg--  285 (425)
T PF12897_consen  220 HLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKKHL------------SVQTIG--  285 (425)
T ss_dssp             BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHH------------HHH-S---
T ss_pred             eccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHHHHHHHHHHh------------cCceeC--
Confidence            5411        11       112345778899998777888999999998766554321            000011  


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHH-h-cHHHHHHHHH----HHHHHHHHHHHH-cC----C-ccccCCCccCCceeEEEEcC
Q 015729          247 WPYTPSIQLLYGLRAALDLIFE-E-GLENVIERHR----RLGKATRLAVEA-WG----L-KNCTQKEEWFSDTVTAVIVP  314 (401)
Q Consensus       247 ~~~~~~~~~~~a~~~al~~~~~-~-g~~~~~~~~~----~~~~~l~~~L~~-~g----~-~~~~~~~~~~~~~~~~~~~~  314 (401)
                          +.=.   -+..-.+++.. + |++..+++..    -..+.+.+.|++ +|    + ....+    ..++++++..+
T Consensus       286 ----pdKv---NQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P----~GGYFIsld~~  354 (425)
T PF12897_consen  286 ----PDKV---NQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKP----KGGYFISLDVL  354 (425)
T ss_dssp             ------HH---HHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE-------SBSS-EEEEES
T ss_pred             ----ccHH---HHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCC----CCceEEEEecC
Confidence                2221   22333344432 2 3333333222    222333344443 22    2 22222    45678999987


Q ss_pred             CCCCHHHHHHHHHhhCCeEEcc-CCC-C----CCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          315 SHINSSEIVRRAWQRYNLSLGL-GLN-K----VAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       315 ~~~~~~~l~~~L~~~~~i~v~~-g~~-~----~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      ++ .++++.+.+++. ||.+.+ |.. +    .....+||++. +-+.+|++.+++.+.-+.+
T Consensus       355 ~G-~AkrvV~lakeA-GV~LT~AGAtfPyg~DP~D~nIRiAPS-~P~leel~~Am~~~~~cv~  414 (425)
T PF12897_consen  355 DG-TAKRVVELAKEA-GVALTPAGATFPYGKDPRDSNIRIAPS-YPSLEELETAMDVFATCVK  414 (425)
T ss_dssp             TT--HHHHHHHHHHT-TEE---TTTTSGGG--TTS-EEEE--S-SS-HHHHHHHHHHHHHHHH
T ss_pred             CC-hHHHHHHHHHHh-CceeCCCCCCCCCCCCCCCCcEEecCC-CCCHHHHHHHHHHHHHHHH
Confidence            76 788999988776 999877 422 1    12456999654 4789999999999987764

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.59  E-value=1.7e-12  Score=120.52  Aligned_cols=323  Identities=13%  Similarity=0.079  Sum_probs=200.8

Q ss_pred             CChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCC-CCCeEEEEc------
Q 015729           19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS-PGDRIISFL------   91 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~-~gd~vl~~~------   91 (401)
                      .++++++++|...+..   +.-...+.+|++.+++++|.+.   ++++..|+.+..+++..+++ ||+++.+..      
T Consensus        54 apS~~m~aAM~~GDD~---Y~gdpSv~~Lee~vael~G~E~---alpthqGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~  127 (467)
T TIGR02617        54 AVTQSMQAAMMRGDEA---YSGSRSYYALAESVKNIFGYQY---TIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAF  127 (467)
T ss_pred             CCCHHHHHHHHcCCcc---cccCchHHHHHHHHHHHhCCce---EEECCCCchHHHHHHHhhcccccccccccccccccc
Confidence            5788899999873332   3334557799999999999987   78898999999988888887 677666332      


Q ss_pred             -CCcchHHHHHHHHHcCCcEEEEeC----------CCCCCCChHHHHHHHhccCCCCceEEEEEec-CCCcccccc---h
Q 015729           92 -IGQFSLLWIDQQQRLNFNVDVVES----------DWGEGAKLDVLASKLAADTAHTIKAICIVHN-ETATGVTNN---L  156 (401)
Q Consensus        92 -~~~~~~~~~~~~~~~g~~~~~v~~----------~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~-~n~tG~~~~---l  156 (401)
                       +.||-. ....+...|+.++.+..          +.++.+|++.+++.+++...+++-.+...-. |...|...|   +
T Consensus       128 hn~~fet-t~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenl  206 (467)
T TIGR02617       128 SNYFFDT-TQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANL  206 (467)
T ss_pred             eEEEEec-chHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHH
Confidence             222221 23456678887776532          2357899999999998632123333322222 333577776   4


Q ss_pred             HHHHHHhhhcCCCcEEEEeccccc-----------CcceeccC------cccceEEEecCCCcccCCCcceEEEecHH--
Q 015729          157 SKVRKLLDEYRHPALFLVDGVSSI-----------CAIDFRMD------EWGIDVALTGSQKALSLPTGMGIVCASPK--  217 (401)
Q Consensus       157 ~~i~~l~~~~~~~~~li~D~a~~~-----------~~~~~~~~------~~~~di~~~s~~K~l~g~~g~G~l~~~~~--  217 (401)
                      .++.++|++  +|+.++.|+|--+           ++...++.      --.+|.+.+|.+|.++.+.| |+++++++  
T Consensus       207 r~V~~la~~--~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApvG-g~Lag~d~~~  283 (467)
T TIGR02617       207 KAVYEIAKK--YDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCFKDDSF  283 (467)
T ss_pred             HHHHHHHHH--cCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCccc-ceEEecchhH
Confidence            568889999  9999999986422           11112211      13589999999999987777 78887766  


Q ss_pred             --HHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCc
Q 015729          218 --ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK  295 (401)
Q Consensus       218 --~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~  295 (401)
                        +.++.+......             -|.-+.+..+.--+-++...|....   -+...++..+..++|.+.|.+.|++
T Consensus       284 ~~l~~~~~~~~i~~-------------EGf~tYGGlagrd~ea~a~Gl~e~~---~~~yl~~ri~qv~yl~~~L~~~Gvp  347 (467)
T TIGR02617       284 FDVYTECRTLCVVQ-------------EGFPTYGGLEGGAMERLAVGLYDGM---NLDWLAYRINQVQYLVNGLEEIGVV  347 (467)
T ss_pred             HHHHHHHHhhcccc-------------cCCcCcCchhHHHHHHHHhhhhhcc---cHHHHHHHHHHHHHHHHHHHhCCCc
Confidence              233433322110             0111111233322233322333221   2345566667788999999999999


Q ss_pred             cccCCCccCCceeEEEE-------cC-CCCCHHHHHHHHHhhCCeEE------ccCCCCCCC-------cEEEEeecc-c
Q 015729          296 NCTQKEEWFSDTVTAVI-------VP-SHINSSEIVRRAWQRYNLSL------GLGLNKVAG-------KVFRIGHLG-H  353 (401)
Q Consensus       296 ~~~~~~~~~~~~~~~~~-------~~-~~~~~~~l~~~L~~~~~i~v------~~g~~~~~~-------~~~Ri~~~~-~  353 (401)
                      +.. .++ +   -+.+.       +| +..++..++..|....||.-      ..+.++..+       ..+|+.+.- .
T Consensus       348 i~~-~Gg-h---av~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~RlaipRrv  422 (467)
T TIGR02617       348 CQQ-AGG-H---AAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLRLTIPRAT  422 (467)
T ss_pred             EEe-cCc-c---EEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCccceeeecccccc
Confidence            865 221 1   12222       12 24577889998887768762      122222111       348986544 6


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q 015729          354 LNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       354 ~~~~di~~~~~~i~~~l~~  372 (401)
                      .|.+.+|...+++.++.+.
T Consensus       423 yt~~h~d~v~~~~~~~~~~  441 (467)
T TIGR02617       423 YTQTHMDFIIEAFKHVKEN  441 (467)
T ss_pred             ccHhHHHHHHHHHHHHHhh
Confidence            6899999999999988754

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.59  E-value=2e-13  Score=127.03  Aligned_cols=227  Identities=22%  Similarity=0.207  Sum_probs=150.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC--------CCCCeEEEEcCCcchHHHHHHHH-------
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--------SPGDRIISFLIGQFSLLWIDQQQ-------  104 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~-------  104 (401)
                      ..+...++.++|.+.++. ....+.++++|++|++.++.-..        ....+|+....+||+.....+.-       
T Consensus        57 ~~~~~~~la~~L~~~~p~-~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~  135 (339)
T PF00202_consen   57 THPEAAELAEKLAELFPG-GLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYR  135 (339)
T ss_dssp             EEHHHHHHHHHHHHHSST-TEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHH
T ss_pred             eccchhhhhhhhhhcccc-ccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCcccc
Confidence            345566888888888854 33459999999999999884422        23468888888888765322221       


Q ss_pred             -HcC---CcEEEEeCCCCCC-----CChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHhhhcCCCcE
Q 015729          105 -RLN---FNVDVVESDWGEG-----AKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPAL  171 (401)
Q Consensus       105 -~~g---~~~~~v~~~~~~~-----~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~  171 (401)
                       ..+   ..+..+|.+....     -..+.+++.+.+...+++.++++.......|...+    +++|.++|++  +|++
T Consensus       136 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~--~gil  213 (339)
T PF00202_consen  136 KGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCRE--HGIL  213 (339)
T ss_dssp             TTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHH--TT-E
T ss_pred             ccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccc--cccc
Confidence             111   1345566542110     00112333333221256889999988888787764    7889999999  9999


Q ss_pred             EEEecccccCcc---ee--ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCC
Q 015729          172 FLVDGVSSICAI---DF--RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTF  246 (401)
Q Consensus       172 li~D~a~~~~~~---~~--~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  246 (401)
                      +|+||++.....   .+  +.....+|+++++  |.++++.++|.+++++++.+.+.....                ++ 
T Consensus       214 lI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~g--K~l~gG~p~sav~~~~~i~~~~~~~~~----------------~~-  274 (339)
T PF00202_consen  214 LIADEVQTGFGRTGKFFASEHYGVDPDIVTFG--KGLGGGLPISAVLGSEEIMEAFQPGSH----------------GS-  274 (339)
T ss_dssp             EEEEETTTTTTTTSSSSGHHHHTSSSSEEEEE--GGGGTTSSEEEEEEEHHHHTTSCTTSS----------------TC-
T ss_pred             eecccccccccccCCccceecccccCcccccc--cchhhhhhcccccccchhhcccccccc----------------cc-
Confidence            999999874321   12  2223458999997  999888889999999999887754321                11 


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc
Q 015729          247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW  292 (401)
Q Consensus       247 ~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~  292 (401)
                       ++..++..+++..++++.+.+++   ..++..+..+++.+.|+++
T Consensus       275 -T~~g~p~~~aaa~~~l~~~~~~~---~~~~~~~~g~~l~~~L~~l  316 (339)
T PF00202_consen  275 -TFGGNPLSCAAALATLEILEEED---LLERVRELGERLREGLREL  316 (339)
T ss_dssp             -TTTT-HHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHH
T ss_pred             -ccccchHhhhhhhhHHHhhccHH---HHHHHHHHHHHHHHHHHHH
Confidence             33456677888899999888765   5566677777777777765

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=99.57  E-value=4.5e-13  Score=115.49  Aligned_cols=282  Identities=15%  Similarity=0.123  Sum_probs=182.1

Q ss_pred             HHHHHHHccCcCC------CCCccHHHHHH-HHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCc
Q 015729           22 DQVIRAMNRNNED------YRSPAVPALTK-TLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQ   94 (401)
Q Consensus        22 ~~v~~a~~~~~~~------~~~~~~~~~~~-~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~   94 (401)
                      .+|++++.+.-..      ..++++.++-+ -|.+-.++.+|.+..---.-.-+||+|+.+++..+++|||+.+...-..
T Consensus        38 ~kVL~AF~~~rvs~~hf~~stGYGydD~GRdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~LRpgDell~i~G~P  117 (416)
T COG4100          38 KKVLEAFRHHRVSESHFTGSTGYGYDDLGRDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGILRPGDELLYITGSP  117 (416)
T ss_pred             HHHHHHHHhcccchhccCCCCCCCccccchhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhccCCCCeEEEecCCc
Confidence            4677887774321      23566666644 5666669999988532111123789999999999999999988776532


Q ss_pred             chHHH---------HHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEec----CCCcccccchHHHHH
Q 015729           95 FSLLW---------IDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHN----ETATGVTNNLSKVRK  161 (401)
Q Consensus        95 ~~~~~---------~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~----~n~tG~~~~l~~i~~  161 (401)
                      +-..-         .......|++...+++..++.+|.+.++..+++    ++|+|.+--.    .-|+=.+.+++++++
T Consensus       118 YDTLeevIG~rg~~~gSL~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~~----~tkli~IQRS~GY~~RpS~~I~eI~~~i~  193 (416)
T COG4100         118 YDTLEEVIGLRGEGQGSLKDFGIKYKAVPLTADGKIDIQAVKTAISD----RTKLIGIQRSKGYAWRPSLSIAEIEEMIT  193 (416)
T ss_pred             chhHHHHhccCCCCcccHHHhCcceeecccccCCcccHHHHHHhcCc----cceEEEEEeccCcCCCCcccHHHHHHHHH
Confidence            32210         123455789999999999999999999999984    6688877632    223333446788888


Q ss_pred             HhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCC--cceEEEecHHHHHHhccCCC-CccccchHHHH
Q 015729          162 LLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPT--GMGIVCASPKALEASKTAKS-VRVFFDWKDYI  238 (401)
Q Consensus       162 l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~--g~G~l~~~~~~~~~~~~~~~-~~~~~~~~~~~  238 (401)
                      +.|+.+.|+++.+|.+++-+.........|+|++.+|.-|.-+|+.  --|+++.+.++.+...-+.- ++         
T Consensus       194 ~vk~inpn~ivFVDNCYGEFvE~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~yRlTaPG---------  264 (416)
T COG4100         194 FVKEINPNVIVFVDNCYGEFVEEKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAAYRLTAPG---------  264 (416)
T ss_pred             HHHhcCCCEEEEEeccchhhhhccCccccchhhhccceeeCCCCceeeccceeechHHHHHhhceeeecCC---------
Confidence            8888889999999999987776667777899999999999876542  12899999999876532110 00         


Q ss_pred             HHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCC
Q 015729          239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN  318 (401)
Q Consensus       239 ~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  318 (401)
                      ..-+.|      .   .+.++....+-+.-  -.....+..+-+.....-|+++|+++.+.....+...+-.+++++...
T Consensus       265 IG~e~G------a---t~~~l~~myqGlFl--APhvv~qa~Kga~fta~~le~lg~~~~P~~~~kRtDlIQavkf~~~eK  333 (416)
T COG4100         265 IGREGG------A---TLYSLREMYQGLFL--APHVVSQAVKGAHFTARFLEKLGFPVNPKYDAKRTDLIQAVKFGSKEK  333 (416)
T ss_pred             cccccc------c---cHHHHHHHHhhhcc--chHHHHHHhhhhHHHHHHHHHcCCCCCCcccccccchhhheecCCHHH
Confidence            001111      1   11222222221111  123455555566666677778899887765555666666777754322


Q ss_pred             HHHHHHHHH
Q 015729          319 SSEIVRRAW  327 (401)
Q Consensus       319 ~~~l~~~L~  327 (401)
                      --++|+.+.
T Consensus       334 mIaFcqaiQ  342 (416)
T COG4100         334 MIAFCQAIQ  342 (416)
T ss_pred             HHHHHHHHh
Confidence            224555543

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.55  E-value=4.3e-12  Score=128.19  Aligned_cols=313  Identities=15%  Similarity=0.108  Sum_probs=202.5

Q ss_pred             CcCChHHHHHHHccCcCCC-----CCcc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CC--CC
Q 015729           17 PVHIPDQVIRAMNRNNEDY-----RSPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LS--PG   84 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~-----~~~~----~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~--~g   84 (401)
                      +..+|..+.+.+.+.....     ++++    ..+.+-+++.+++++.|.+-.. ..+..++|.+-++++.+. ..  +.
T Consensus        90 ~~~~P~vi~~~i~~~~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtGm~vaN-ASl~D~atA~aEA~~ma~~~~~~k~  168 (954)
T PRK12566         90 GTVTPTVILRNVLENPGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDLAN-ASLLDEATAAAEAMALAKRVAKSKS  168 (954)
T ss_pred             CCcCcHHHHHHHHhCchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCchhhh-hhhccchhHHHHHHHHHHHHhhcCC
Confidence            4455555546666643221     1222    2344668999999999998432 445667777666544332 22  24


Q ss_pred             CeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHH
Q 015729           85 DRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKL  162 (401)
Q Consensus        85 d~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l  162 (401)
                      .+|+++...|+...  ....++..|++++.           +++++.+++    .+..+++.+| |..|.+.|+++|.++
T Consensus       169 ~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-----------~~~~~~~~~----~~~~v~vq~P-~~~G~i~d~~~i~~~  232 (954)
T PRK12566        169 NRFFVDEHCHPQTLSVLRTRAEGFGFELVV-----------DAVDNLAAH----AVFGALLQYP-DTHGEIRDLRPLIDQ  232 (954)
T ss_pred             CEEEECCCCCHHHHHHHHHhhhcCCcEEEE-----------cchhhcCCC----CEEEEEEECC-CCceEEccHHHHHHH
Confidence            67888888777654  44566777887775           223333332    3566666665 578999999999999


Q ss_pred             hhhcCCCcEEEEeccc--ccCcceeccCcccceEEEecCCCccc-----CCCcceEEEecHHHHHHhccCCCC-------
Q 015729          163 LDEYRHPALFLVDGVS--SICAIDFRMDEWGIDVALTGSQKALS-----LPTGMGIVCASPKALEASKTAKSV-------  228 (401)
Q Consensus       163 ~~~~~~~~~li~D~a~--~~~~~~~~~~~~~~di~~~s~~K~l~-----g~~g~G~l~~~~~~~~~~~~~~~~-------  228 (401)
                      +|+  .|.++++ ++-  +++ +-....++|+||++++.+- |+     |+++.|++++++++.++++.....       
T Consensus       233 ~h~--~gal~~~-~~d~laL~-ll~~Pge~GADI~vG~~Q~-fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G  307 (954)
T PRK12566        233 LHG--QQALACV-AADLLSLL-VLTPPGELGADVVLGSTQR-FGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARG  307 (954)
T ss_pred             HHH--cCCEEEE-EeCHHHHh-CCCChhhcCCcEEeeCCCc-CCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCC
Confidence            999  8887663 332  222 2234567899999887663 32     345579999999998888776531       


Q ss_pred             ----ccccchHHHHHHhhcCCCCCCCCcHH---HHHHHHHHHHH--HHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccC
Q 015729          229 ----RVFFDWKDYIKFYNLGTFWPYTPSIQ---LLYGLRAALDL--IFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQ  299 (401)
Q Consensus       229 ----~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~a~~~al~~--~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  299 (401)
                          ....+-.++..+.++.+     +++.   .+.+..+++-.  +-.+|++++.++...++.++.+.|.+.|+++...
T Consensus       308 ~~a~~l~LqtREQHIRReKAt-----SNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g~~~~~~  382 (954)
T PRK12566        308 NTALRMALQTREQHIRREKAN-----SNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAKGIKRLNR  382 (954)
T ss_pred             CeeeehhhhHHHHHhhhcccc-----chhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence                11223446667777776     4443   23333344332  2356788999999999999999999999887643


Q ss_pred             CCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHH
Q 015729          300 KEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVE  367 (401)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~  367 (401)
                        .+..  -+.+++ .. ++.++.++..++ ||-++..    .++.+.|++..+++++|++.++.++.
T Consensus       383 --~fF~--~~~v~~-~~-~~~~~~~~a~~~-~~n~r~~----~~~~~~~s~de~~~~~~~~~~~~~f~  439 (954)
T PRK12566        383 --HFFD--TLTLEV-GG-AQAAIIESAEAA-RINLRIL----GRGRLGVSLDETCDEATVARLFDIFL  439 (954)
T ss_pred             --Cccc--eEEEEc-cC-CHHHHHHHHHHC-CCeeEEe----CCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence              2222  233444 21 466676666554 7776632    34579999999999999999999884

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.54  E-value=7.8e-12  Score=112.18  Aligned_cols=323  Identities=16%  Similarity=0.111  Sum_probs=200.8

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCC--CCccHHHHHHHHHHHHHHHhcC-CC----Cce--EEecCChhHHHHHHHhc
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDY--RSPAVPALTKTLLEDIKKIFKT-TS----GTP--FLIPTTGTGAWESALTN   79 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~g~-~~----~~~--i~~~~g~t~a~~~~~~~   79 (401)
                      ++|-+--|-.++-++|.+|-+.-....  ..+-+.+...+..+.+.+++-. +.    ...  .+-+.|||.|+..+..-
T Consensus        34 GvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~f  113 (396)
T COG1448          34 GVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADF  113 (396)
T ss_pred             eeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHH
Confidence            456666677888888887777644332  2344455666777777665543 31    111  24588999999876533


Q ss_pred             --cCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC-CCC-CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc
Q 015729           80 --TLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES-DWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN  155 (401)
Q Consensus        80 --~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~-~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~  155 (401)
                        -..+..+|-+++|.+..+.  .+.+..|.++...+. +.+ ..+|.+.+-+.+++-+ +...+++=...|||||.-++
T Consensus       114 l~~~~~~~~vwis~PtW~NH~--~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~-~~~vvLLH~CcHNPTG~D~t  190 (396)
T COG1448         114 LARFFPDATVWISDPTWPNHK--AIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAP-EGSVVLLHGCCHNPTGIDPT  190 (396)
T ss_pred             HHHhCCCceEEeCCCCcHhHH--HHHHhcCCceeeeeccccccccccHHHHHHHHHhCC-CCCEEEEecCCCCCCCCCCC
Confidence              2456667999999665553  567889999988875 333 3588888888777643 22222222334799999886


Q ss_pred             ---hHHHHHHhhhcCCCcEEEEecccccCcceeccC--------cccc-eEEEecCCCcccCCCc--ce---EEEecHHH
Q 015729          156 ---LSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD--------EWGI-DVALTGSQKALSLPTG--MG---IVCASPKA  218 (401)
Q Consensus       156 ---l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~--------~~~~-di~~~s~~K~l~g~~g--~G---~l~~~~~~  218 (401)
                         +++|.++.++  ++.+-+.|-||..+.--.+-+        ..+. -+++.|.+|.| |..|  .|   +++-+.+.
T Consensus       191 ~~qW~~l~~~~~~--r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnf-gLYgERVGa~~vva~~~~~  267 (396)
T COG1448         191 EEQWQELADLIKE--RGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNF-GLYGERVGALSVVAEDAEE  267 (396)
T ss_pred             HHHHHHHHHHHHH--cCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhh-hhhhhccceeEEEeCCHHH
Confidence               4567777778  999999998875332212211        1233 57888999998 4544  23   33444444


Q ss_pred             HHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHH--HHH---HhcHHHHHHHHHHHHHHHHHHHHHc-
Q 015729          219 LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALD--LIF---EEGLENVIERHRRLGKATRLAVEAW-  292 (401)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~--~~~---~~g~~~~~~~~~~~~~~l~~~L~~~-  292 (401)
                      ..++..        +++...+    +.  .++||..++..+...|.  .+.   +.+++..++++.+.++.|++.|++. 
T Consensus       268 a~~v~s--------qlk~~iR----~~--ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~  333 (396)
T COG1448         268 ADRVLS--------QLKAIIR----TN--YSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKALG  333 (396)
T ss_pred             HHHHHH--------HHHHHHH----hc--cCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            443321        1111111    11  23455555444444442  122   2236778889999999999999984 


Q ss_pred             ---CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          293 ---GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       293 ---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                         .+..+..    +.+ ++.  . .|.+.+++ .+|+++++|++..      .+  |++..+ +++..++.+.++|.++
T Consensus       334 ~~~~f~~i~~----Q~G-MFs--y-~Gls~~QV-~rLree~~IY~v~------sG--Ri~vaG-l~~~ni~~va~ai~~v  395 (396)
T COG1448         334 APRNFDFIIS----QRG-MFS--Y-TGLSPEQV-DRLREEFGIYLVA------SG--RINVAG-LNTSNIDYVAKAIAAV  395 (396)
T ss_pred             CCcccchHhh----cCc-eee--c-CCCCHHHH-HHHHHhccEEEec------CC--eeeecc-CChhhHHHHHHHHHhh
Confidence               3555543    344 332  3 36666665 6677888998752      23  887666 8999999999999875

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.51  E-value=5.1e-12  Score=112.83  Aligned_cols=295  Identities=13%  Similarity=0.088  Sum_probs=172.9

Q ss_pred             HHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccC-CCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEe
Q 015729           41 PALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTL-SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVE  114 (401)
Q Consensus        41 ~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~  114 (401)
                      ...+.-+|+.+|+++    |.+ ++++|++|.|++.|+..++.-++ .+.+.|+++.|.|+=+. ..+ ...|...+...
T Consensus       112 SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYs-Ati-~l~~~~~v~Yy  189 (475)
T KOG0258|consen  112 SQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYS-ATI-SLLGGTQVPYY  189 (475)
T ss_pred             ccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhH-HHH-HHhCCccccee
Confidence            344555666666655    432 45779999999999998876644 57788999999766443 333 34566666555


Q ss_pred             CCC--CCCCChHHHHHHHhcc-CCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEEEEecccccCcce----
Q 015729          115 SDW--GEGAKLDVLASKLAAD-TAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID----  184 (401)
Q Consensus       115 ~~~--~~~~d~~~le~~~~~~-~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~~~~~----  184 (401)
                      +++  +|.+|.++|++.+++- ...+++++++.+|.||||.+..   +++|.++|++  +++.++.|++|.--...    
T Consensus       190 LdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~--~~l~llaDEVYQ~Nvy~~~sk  267 (475)
T KOG0258|consen  190 LDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAE--EGLVLLADEVYQDNVYTTGSK  267 (475)
T ss_pred             eccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHH--cCeEEechHHHHhhccCCCcc
Confidence            554  6789999999988752 2246899999999999999985   7788889999  99999999986421100    


Q ss_pred             e--------ccCccc---c-eEEEecCCCcccCCCc--ceEEE---ecHHHHHHhccCCCCccccchHHH-HHHhhcCCC
Q 015729          185 F--------RMDEWG---I-DVALTGSQKALSLPTG--MGIVC---ASPKALEASKTAKSVRVFFDWKDY-IKFYNLGTF  246 (401)
Q Consensus       185 ~--------~~~~~~---~-di~~~s~~K~l~g~~g--~G~l~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~  246 (401)
                      |        ......   + -+...|.||.+.|--|  -|++=   ..++....+.....-......... .......  
T Consensus       268 FhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~vdl~Vn--  345 (475)
T KOG0258|consen  268 FHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQKLVDLVVN--  345 (475)
T ss_pred             hHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHhhhhcCCccchhhhceecC--
Confidence            0        111111   2 2344577887754322  25542   334433322211100000000000 0000111  


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCC---------
Q 015729          247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSH---------  316 (401)
Q Consensus       247 ~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~---------  316 (401)
                          ++.    .-....+.+.++ -+.+.+..++.++.+.+.++++ |+.+...++.-+  .+--+.+|.+         
T Consensus       346 ----PP~----Pgd~Sy~~~~~E-kd~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY--~fP~i~lP~kaie~A~~~~  414 (475)
T KOG0258|consen  346 ----PPK----PGDPSYDLFSSE-KDGILSSLRSRAKLTEDAFNSLEGISCNPVQGAMY--LFPQISLPPKAIEAAKALG  414 (475)
T ss_pred             ----CCC----CCCcchhhhhhh-hHhHHHHHHHHhHHHHHHHhhcCceeeccCcccee--ecccccCCHHHHHHHHHhC
Confidence                111    012233333333 2557777888888889999987 888766543211  1122334421         


Q ss_pred             -CCHHHHHHHHHhhCCeEEccCCCCC--CCcE-EEEeecc
Q 015729          317 -INSSEIVRRAWQRYNLSLGLGLNKV--AGKV-FRIGHLG  352 (401)
Q Consensus       317 -~~~~~l~~~L~~~~~i~v~~g~~~~--~~~~-~Ri~~~~  352 (401)
                       .+..-.|..|++..||-+.||+...  .|.| +|..+-.
T Consensus       415 ~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp  454 (475)
T KOG0258|consen  415 IAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILP  454 (475)
T ss_pred             CCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecC
Confidence             1223467778888899999996532  3333 8886655

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.49  E-value=4.4e-12  Score=115.54  Aligned_cols=223  Identities=17%  Similarity=0.129  Sum_probs=152.8

Q ss_pred             CCcCChHHHHHHHccCcCCCC----CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           16 GPVHIPDQVIRAMNRNNEDYR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~~~----~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      |-+..++++++++........    .-.......++...-..+.+....+.+.++++.+.|+..++.++.. +.+|++.-
T Consensus        35 G~s~~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~~~aea~~ivnnn~aAVll~~~al~~-~~EvVis~  113 (395)
T COG1921          35 GRSLYSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGLTGAEAAAIVNNNAAAVLLTLNALAE-GKEVVVSR  113 (395)
T ss_pred             CCccCCHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhcccchhheeeECCcHHHHHHHHhhhcc-CCeEEEEc
Confidence            667788888888887543321    1112223334444344455555444588899999999888777665 55655543


Q ss_pred             -----CCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc--cchHHHHHHhh
Q 015729           92 -----IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT--NNLSKVRKLLD  164 (401)
Q Consensus        92 -----~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~--~~l~~i~~l~~  164 (401)
                           .++++.  ....+..|++++.+....  .....+++.++.++    +++++-++.+|. |..  .+.++++++|+
T Consensus       114 g~lV~gg~~~v--~d~~~~aG~~l~EvG~tn--~t~~~d~~~AIne~----ta~llkV~s~~~-~f~~~l~~~~l~~ia~  184 (395)
T COG1921         114 GELVEGGAFRV--PDIIRLAGAKLVEVGTTN--RTHLKDYELAINEN----TALLLKVHSSNY-GFTGMLSEEELVEIAH  184 (395)
T ss_pred             cccccCCCCCh--hHHHHHcCCEEEEecccC--cCCHHHHHHHhccC----CeeEEEEeeccc-cccccccHHHHHHHHH
Confidence                 244443  577888999999887543  35789999999864    488887777664 544  46788999999


Q ss_pred             hcCCCcEEEEecccccCcc-ee---ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHH
Q 015729          165 EYRHPALFLVDGVSSICAI-DF---RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF  240 (401)
Q Consensus       165 ~~~~~~~li~D~a~~~~~~-~~---~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
                      +  +|+++++|++++.... ..   .+-+.|+|++++|+.|.|+||. .|++++++++++++......          +.
T Consensus       185 ~--~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPq-aGii~GkKelI~~lq~~~l~----------Ra  251 (395)
T COG1921         185 E--KGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGPQ-AGIIVGKKELIEKLQSHPLK----------RA  251 (395)
T ss_pred             H--cCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCCc-cceEechHHHHHHHHhhhhh----------hh
Confidence            9  9999999998764321 11   2234689999999999997666 69999999999887653211          11


Q ss_pred             hhcCCCCCCCCcHHHHHHHHHHHHHHHHh
Q 015729          241 YNLGTFWPYTPSIQLLYGLRAALDLIFEE  269 (401)
Q Consensus       241 ~~~g~~~~~~~~~~~~~a~~~al~~~~~~  269 (401)
                      +.        ..-..++++.++++.+...
T Consensus       252 lr--------v~K~tla~l~~aLe~y~~~  272 (395)
T COG1921         252 LR--------VDKETLAALEAALELYLQP  272 (395)
T ss_pred             hh--------cCcHhHHHHHHHHHHHcCc
Confidence            22        3335568899999988764

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=99.45  E-value=4.1e-12  Score=115.74  Aligned_cols=298  Identities=13%  Similarity=0.113  Sum_probs=174.2

Q ss_pred             HHHHHHHHHHHhcCCCCceEEecCChhH-HHHHHHhccC--CCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCC--C
Q 015729           44 TKTLLEDIKKIFKTTSGTPFLIPTTGTG-AWESALTNTL--SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW--G  118 (401)
Q Consensus        44 ~~~l~~~la~~~g~~~~~~i~~~~g~t~-a~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~  118 (401)
                      ...+-..+-+..|.......++++-+|. .+.+.+.++-  ..++.|+.+...|.+-.  ......|.+++.|+...  +
T Consensus        58 tn~l~~d~~~~~G~~~~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~--kai~~AGl~~~vV~~~~~~d  135 (389)
T PF05889_consen   58 TNSLVLDALRLAGLRSVKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCF--KAIERAGLEPVVVENVLEGD  135 (389)
T ss_dssp             HHHHHHHHHHHTTHTTHCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHH--HHHHHTT-EEEEE-EEEETT
T ss_pred             HHHHHHHHHHHcCCccccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchH--HHHHhcCCeEEEeeccCCCC
Confidence            3344445556678775555677777774 3444444432  46788998888777544  56777899999998532  2


Q ss_pred             C-CCChHHHHHHHhccCCCCceEEEEEecCCCcccccc-hHHHHHHhhhcCCCcEEEEecccccCcce------eccCcc
Q 015729          119 E-GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-LSKVRKLLDEYRHPALFLVDGVSSICAID------FRMDEW  190 (401)
Q Consensus       119 ~-~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~-l~~i~~l~~~~~~~~~li~D~a~~~~~~~------~~~~~~  190 (401)
                      . ..|.+.+|+++++.. ....+.++++.+...+...| +++|.++|++  +|++.|+..||+.-+..      ......
T Consensus       136 ~l~td~~~ie~~i~~~G-~~~iLcvltttscfapr~~D~i~~IakiC~~--~~IPhlvNnAYgvQ~~~~~~~i~~a~~~G  212 (389)
T PF05889_consen  136 ELITDLEAIEAKIEELG-ADNILCVLTTTSCFAPRLPDDIEEIAKICKE--YDIPHLVNNAYGVQSSKCMHLIQQAWRVG  212 (389)
T ss_dssp             EEEEHHHHHHHHHHHHC-GGGEEEEEEESSTTTTB----HHHHHHHHHH--HT--EEEEGTTTTT-HHHHHHHHHHHHHS
T ss_pred             eeeccHHHHHHHHHHhC-CCCeEEEEEecCccCCCCCccHHHHHHHHHH--cCCceEEccchhhhHHHHHHHHHHHHhcC
Confidence            1 347888899886543 45578899998888888888 9999999999  99999999999872210      011112


Q ss_pred             cceEEEecCCCcccCCCcceEEEecH-HHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh
Q 015729          191 GIDVALTGSQKALSLPTGMGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE  269 (401)
Q Consensus       191 ~~di~~~s~~K~l~g~~g~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~  269 (401)
                      .+|+++-|.-|.|..|.|-+.++... ..+..+....+                |.  ....+.   .-.-..+..+-..
T Consensus       213 Rvda~vqS~dkNF~VPvGgai~As~~~~~i~~vs~~Yp----------------GR--as~sp~---ld~~itLl~LG~~  271 (389)
T PF05889_consen  213 RVDAFVQSTDKNFMVPVGGAIMASFDPSGILAVSKEYP----------------GR--ASASPS---LDLFITLLSLGCT  271 (389)
T ss_dssp             TCSEEEEEHHHHHCEESSHEEEEESSHHHHHHHHHTSH----------------SH--BTSHHH---HHHHHHHHHHHHH
T ss_pred             CcceeeeecCCCEEecCCCcEEEecCHHHHHHHHHHhh----------------hh--hhcccc---hHHHHHHHHHhhh
Confidence            46777777777777676655665443 44554443211                11  000111   2233334444455


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCCceeEEEEcCC--C---CCHHHHHHHHHhhCCeE----Ecc
Q 015729          270 GLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFSDTVTAVIVPS--H---INSSEIVRRAWQRYNLS----LGL  336 (401)
Q Consensus       270 g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~l~~~L~~~~~i~----v~~  336 (401)
                      |+.....+..+...++++.|+++    +-.+... +  .-+..+.+.++.  .   .+...+...|..+ +|.    |.+
T Consensus       272 g~~~ll~~r~~~f~~l~erl~~~aee~~e~ll~~-p--~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R-~VsG~RvV~~  347 (389)
T PF05889_consen  272 GYGALLKERKASFPYLKERLKKWAEEVGERLLET-P--RNHISMAFTLDTLYEISQKDGTFLGSMLFKR-GVSGIRVVTP  347 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTEEBSSS-T--T-SSEEEEE-TTCCTCCSSHHHHHHHHHHHT-TEESSEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC-C--CCCeeEEEECccchhhccchhhhHHHHHHhC-Ccccceeecc
Confidence            67778888888888888888764    4333221 1  233456677631  1   1235778888766 654    221


Q ss_pred             CC-------CCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          337 GL-------NKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       337 g~-------~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      ..       ..+.-.++-+.+..-.++||+|.++++|+++++
T Consensus       348 ~~~~~tsh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  348 GGKKQTSHSSNYPCPYLTAASAIGMTREEVDYFVKRLDKIIK  389 (389)
T ss_dssp             SSCEEETTSS--SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred             CCCcccccCCCCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence            11       112236788855555999999999999999875

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=99.44  E-value=1.1e-10  Score=106.64  Aligned_cols=267  Identities=15%  Similarity=0.050  Sum_probs=167.9

Q ss_pred             EEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCC--ceEEEEEecCCCcccccchHHHHHHhh
Q 015729           87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHT--IKAICIVHNETATGVTNNLSKVRKLLD  164 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~--~~~i~~~~~~n~tG~~~~l~~i~~l~~  164 (401)
                      +..++..|.|.  .+.+...+++.+.++.+.+..++.+.|++++.++....  |-.+..+...+.+-...++.+|..+|+
T Consensus       185 ~Y~SDqahssv--eka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~  262 (511)
T KOG0628|consen  185 AYCSDQAHSSV--EKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPVCR  262 (511)
T ss_pred             EEecCcccchH--HHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcchhh
Confidence            45555655554  46778889999999999988999999999998755222  223333333333334457999999999


Q ss_pred             hcCCCcEEEEecccccCcc---eeccC---cccceEEEecCCCcccCCCcceEEEecHHH-HHHhccCC-------CCcc
Q 015729          165 EYRHPALFLVDGVSSICAI---DFRMD---EWGIDVALTGSQKALSLPTGMGIVCASPKA-LEASKTAK-------SVRV  230 (401)
Q Consensus       165 ~~~~~~~li~D~a~~~~~~---~~~~~---~~~~di~~~s~~K~l~g~~g~G~l~~~~~~-~~~~~~~~-------~~~~  230 (401)
                      +  +|+|+++|+||+..+.   .++.-   -..+|.+.+.+|||+..-.-|..+++++.. +.+.....       ....
T Consensus       263 ~--~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~~  340 (511)
T KOG0628|consen  263 E--EGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQGS  340 (511)
T ss_pred             h--cCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhhcc
Confidence            9  9999999999985432   22211   124789999999999766777888877662 10000000       0000


Q ss_pred             ccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeE
Q 015729          231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVT  309 (401)
Q Consensus       231 ~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~  309 (401)
                      ..++.+++.-+  |+      . ....-++-.++.+.-+++++..++..++++++-+.+.+- .+++..+    ..-.++
T Consensus       341 ~~Dyrhwqipl--~r------R-fRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~----~~lgLv  407 (511)
T KOG0628|consen  341 APDYRHWQIPL--GR------R-FRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNK----RILGLV  407 (511)
T ss_pred             CCCcccccccc--cc------c-hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecc----ccccee
Confidence            11122111100  00      0 111234555565555556666777777777777777664 6776654    233477


Q ss_pred             EEEcCC-CCCHHHHHHHHHhhCCeEEccCCCCCCCcE-EEEeecc-cCCHHHHHHHHHHHHHHHHh
Q 015729          310 AVIVPS-HINSSEIVRRAWQRYNLSLGLGLNKVAGKV-FRIGHLG-HLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       310 ~~~~~~-~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~-~Ri~~~~-~~~~~di~~~~~~i~~~l~~  372 (401)
                      +|++.+ ....+++.+++....+|.+.+...  .+++ +|++..+ ..+++|++...+.|.+...+
T Consensus       408 cFRlk~~N~~ne~Ll~~in~~g~i~l~~~~l--~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~  471 (511)
T KOG0628|consen  408 CFRLKGDNEINEALLNRLNSSGRIHLVPASL--HGKFVLRFAVCSPLTNESDIDEAWKIIFEAADE  471 (511)
T ss_pred             EEeecCCcHHHHHHHHHHHhcCcEEEEEeee--cceEEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Confidence            788732 123457888887666787776643  2444 8998766 55688999999999888766

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=1.9e-11  Score=109.27  Aligned_cols=330  Identities=15%  Similarity=0.097  Sum_probs=205.7

Q ss_pred             CCCCcccccCCCcCChHHHHHHHccCcCCC---CC-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC
Q 015729            6 APGKNHLFVPGPVHIPDQVIRAMNRNNEDY---RS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL   81 (401)
Q Consensus         6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~---~~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~   81 (401)
                      +...+||...+...+-+.+...+.+++...   ++ ++..+.=..++++|++++|.+.   .++.+-+-.++..++-++.
T Consensus        99 ~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~E~---aivYs~gF~ti~S~ipafs  175 (467)
T KOG1358|consen   99 FASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGTED---AIVYSYGFSTIESAIPAFS  175 (467)
T ss_pred             ccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCCcc---eeeeccccchhhhcchhhh
Confidence            445567777777888888888888875432   22 3333444578999999999987   4566777888888889999


Q ss_pred             CCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCC-----CC---c-eEEEEEecCCCccc
Q 015729           82 SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA-----HT---I-KAICIVHNETATGV  152 (401)
Q Consensus        82 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~-----~~---~-~~i~~~~~~n~tG~  152 (401)
                      ++||-+.+....++...  .-.+...-.++....+     |.+.+|+.+.+.+.     +|   + +.++.....-++|.
T Consensus       176 KrGDIi~~de~~nfaIq--~GlqlSRS~i~~Fkhn-----dm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~  248 (467)
T KOG1358|consen  176 KRGDIIFVDEAVNFAIQ--KGLQLSRSTISYFKHN-----DMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGD  248 (467)
T ss_pred             ccCcEEEEehhhhHHHH--HHHhhhhheeEEecCC-----CHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCc
Confidence            99999888877655543  2222222233444333     67777766654320     01   1 34566666788999


Q ss_pred             ccchHHHHHHhhhcCCCcEEEEecccccCcce---------eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhc
Q 015729          153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAID---------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK  223 (401)
Q Consensus       153 ~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~---------~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~  223 (401)
                      +.|+.+|.++..+  |...||+|+..++|...         +......+|++++|+.-.++ ..| |+.+++.-..+.-+
T Consensus       249 i~pl~~iv~lk~K--yk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~ala-s~G-gFc~G~~~i~~hQr  324 (467)
T KOG1358|consen  249 ICPLPEIVKLKNK--YKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALA-SGG-GFCAGKSFIADHQR  324 (467)
T ss_pred             ccccHHHHHHHhh--heEEEEEecccccccccccCccccccCCCCccceeeeeeccccccc-ccC-ceeecceeeEeeee
Confidence            9999999999999  99999999998877542         22223358999999887774 332 66666443221111


Q ss_pred             cCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 015729          224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE  302 (401)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~  302 (401)
                        ....              |.-+..+.++....++..++.....+.  .+.+..+.....+.+.|... ++.+.+..  
T Consensus       325 --LSg~--------------~Y~fSAslPp~la~aa~~ai~i~~~~p--~~~~~L~~k~~~~H~~l~~~s~~~v~~~~--  384 (467)
T KOG1358|consen  325 --LSGS--------------GYCFSASLPPYLAGAAIKAILIEEWNP--EIVQPLRAKVAKFHAALSSNSGFIVSGSP--  384 (467)
T ss_pred             --cccc--------------ceeeeccCchhhhhhHHHHHHHHhhCc--chhhhhhccccccchhhhcCCceEEecCc--
Confidence              0001              111233455555566677777655542  35566666666677777664 66665432  


Q ss_pred             cCCceeEEEEcCCC-CCH-------HHHHHHHHhhCCeEEccC-CC-----CCCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          303 WFSDTVTAVIVPSH-INS-------SEIVRRAWQRYNLSLGLG-LN-----KVAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       303 ~~~~~~~~~~~~~~-~~~-------~~l~~~L~~~~~i~v~~g-~~-----~~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                       -|+ ++.+.+.+. .+.       +++...+..+ ++.+... +-     ..-..-+||++...++++|++++...|++
T Consensus       385 -~SP-i~hl~l~~~~~s~e~e~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~  461 (467)
T KOG1358|consen  385 -ESP-IIHLQLERSYGSREKEEKLLEEIVDKCIAE-GVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKE  461 (467)
T ss_pred             -CCc-eeeeeecccccchHHHHHHHHHHHHHHHhh-cceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHH
Confidence             343 444555221 111       1344444445 5554322 11     11123599999999999999999999998


Q ss_pred             HHHh
Q 015729          369 ILKD  372 (401)
Q Consensus       369 ~l~~  372 (401)
                      +...
T Consensus       462 ~~~~  465 (467)
T KOG1358|consen  462 VASA  465 (467)
T ss_pred             HHHh
Confidence            8654

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=99.42  E-value=3.5e-13  Score=121.75  Aligned_cols=222  Identities=18%  Similarity=0.156  Sum_probs=56.0

Q ss_pred             CCcCChHHHHHHHccCcCCCCC--cc-----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEE
Q 015729           16 GPVHIPDQVIRAMNRNNEDYRS--PA-----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRII   88 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~~~~--~~-----~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl   88 (401)
                      |-+++++++++++.+...++..  +.     -..-+..+.+.++.+.|.+.   .++++|...|+.+++.++ .+|.+|+
T Consensus        14 GRs~l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~ltgAea---A~VvNnnaAAv~L~l~~l-a~~~EvI   89 (367)
T PF03841_consen   14 GRSPLSEEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCELTGAEA---ALVVNNNAAAVLLALNTL-AKGKEVI   89 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccc-ccccccc
Confidence            5567888888888874433211  11     11235567788888888776   678888888888776664 4567777


Q ss_pred             EEcCCcc----hHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCC--cccc--cchHHHH
Q 015729           89 SFLIGQF----SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETA--TGVT--NNLSKVR  160 (401)
Q Consensus        89 ~~~~~~~----~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~--tG~~--~~l~~i~  160 (401)
                      ++.-+-.    ++....+.+..|+++++|-...  ...++++|+++.+    ++.+++..|.+|.  .|..  .++++++
T Consensus        90 vsRGelVeiGgsFRip~vm~~sGa~lvEVGttN--~t~~~Dye~AI~e----~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~  163 (367)
T PF03841_consen   90 VSRGELVEIGGSFRIPDVMRQSGARLVEVGTTN--RTHLSDYEKAITE----NTAALLKVHTSNFRIQGFTGEVSLEELA  163 (367)
T ss_dssp             -----------------------------------------------------------------------------HHH
T ss_pred             ccccccccccccccccccccccccccccccccc--ccccccccccccc----cccccccccccccccccccccccHHHHH
Confidence            7643211    1124466777899998887653  3468899999985    5589988887766  3433  4799999


Q ss_pred             HHhhhcCCCcEEEEecccccC-------c--ce--eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCc
Q 015729          161 KLLDEYRHPALFLVDGVSSIC-------A--ID--FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR  229 (401)
Q Consensus       161 ~l~~~~~~~~~li~D~a~~~~-------~--~~--~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~  229 (401)
                      +++++  +++++++|...+..       .  .+  .+.-+.|+|+++||+.|.++||. .|+++++++++++++...   
T Consensus       164 ~la~~--~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ-aGiI~Gkk~lI~~lk~~p---  237 (367)
T PF03841_consen  164 ELAKE--HGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQ-AGIIVGKKELIEKLKKHP---  237 (367)
T ss_dssp             HHHHH--HT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S--EEEEEEHHHHHHHHHHH---
T ss_pred             HHHhh--cCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCC-eEEEEeCHHHHHHHhhCC---
Confidence            99999  99999999876321       1  01  12345689999999999886655 799999999999876421   


Q ss_pred             cccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHH
Q 015729          230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFE  268 (401)
Q Consensus       230 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~  268 (401)
                             ..+.+.        .+=..++++.++++.+..
T Consensus       238 -------l~Ralr--------vdK~tla~L~atL~~Y~~  261 (367)
T PF03841_consen  238 -------LGRALR--------VDKLTLAALEATLRLYLD  261 (367)
T ss_dssp             -------HTTT-B----------HHHHHHHHHHHHH---
T ss_pred             -------CcceEe--------eCHHHHHHHHHHHHHHHH
Confidence                   001111        333567888888887763

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=99.34  E-value=1.4e-09  Score=96.58  Aligned_cols=330  Identities=15%  Similarity=0.136  Sum_probs=198.4

Q ss_pred             ccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-----CCCCCeE
Q 015729           13 FVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-----LSPGDRI   87 (401)
Q Consensus        13 ~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-----~~~gd~v   87 (401)
                      .-.|...++.....+|-.....+   .-...+..|.+.+++.+|.+.   ++.+.-|-.|=++.+..+     ..||.+.
T Consensus        53 TDSGTgams~~qwaamm~GDEAY---agsrs~~~L~~avkdifGfq~---~iPthQGRgAE~Il~~i~ik~~~~~pg~~~  126 (471)
T COG3033          53 TDSGTGAMTDKQWAAMMRGDEAY---AGSRSYYALADAVKDIFGFQY---TIPTHQGRGAENILIPILIKKGEQEPGSKM  126 (471)
T ss_pred             ccCCcccccHHHHHHHhccchhh---cccccHHHHHHHHHHhcCcee---eeeccCCccHHHHHHHHHhhhccccCCccc
Confidence            34566777777776666644332   123345578899999999754   556665555544433222     3467778


Q ss_pred             EEEcCCcchHHHHHHHHHcCCcEEEEeCCC----------CCCCChHHHHHHHhccCCCCceEEEEEecCCC-cccccc-
Q 015729           88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDW----------GEGAKLDVLASKLAADTAHTIKAICIVHNETA-TGVTNN-  155 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~----------~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~-tG~~~~-  155 (401)
                      +++++.||-..- .-.+..|+.++.++.++          .+.+|++.|++.+++-..+.+-.|+++..+|. .|...+ 
T Consensus       127 ~~~sN~~FdTTr-~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm  205 (471)
T COG3033         127 VAFSNYHFDTTR-GHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSM  205 (471)
T ss_pred             cccccceecchh-HHHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchH
Confidence            888888887653 33455787777776543          35789999999999755445556655544444 455544 


Q ss_pred             --hHHHHHHhhhcCCCcEEEEecccccCcc------eeccCcc-----------cceEEEecCCCcccCCCcceEEEecH
Q 015729          156 --LSKVRKLLDEYRHPALFLVDGVSSICAI------DFRMDEW-----------GIDVALTGSQKALSLPTGMGIVCASP  216 (401)
Q Consensus       156 --l~~i~~l~~~~~~~~~li~D~a~~~~~~------~~~~~~~-----------~~di~~~s~~K~l~g~~g~G~l~~~~  216 (401)
                        +++..++|++  |+++++.|++...-..      ..+..++           .+|-.+.|..|=-....| |+++.++
T Consensus       206 ~n~r~v~~ia~k--y~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmG-Gfl~~~D  282 (471)
T COG3033         206 ANMKAVYEIAKK--YDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMG-GFLCFKD  282 (471)
T ss_pred             HhHHHHHHHHHH--cCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccceeccc-cEEEecC
Confidence              6778999999  9999999987432110      0111111           367788888885544555 8999998


Q ss_pred             H----HHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc
Q 015729          217 K----ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW  292 (401)
Q Consensus       217 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~  292 (401)
                      +    +...++.....             .-|.-..+...--.+.++...|..-.+  . ...++.....++|.+.|.+.
T Consensus       283 ~~~fDvy~~~~~~~V~-------------~eG~~tYGgl~GrdmealAvGL~e~~~--~-~yl~~Rv~Qv~YL~~~l~~~  346 (471)
T COG3033         283 DSFFDVYEECRTLVVV-------------QEGFPTYGGLAGRDMEALAVGLREGVN--F-DYLAHRVAQVQYLADGLEEA  346 (471)
T ss_pred             ccHHHHHHHHHhheEe-------------eccccccCcccchhHHHHHHHHHHhcC--c-HHHHHHHHHHHHHHHHHHhc
Confidence            7    33333332110             012111112222222333333322111  2 24444556678999999999


Q ss_pred             CCccccCCCccCCceeEEEEc----C----CCCCHHHHHHHHHhhCCeEEc-cC-----CCCCCC-------cEEEEeec
Q 015729          293 GLKNCTQKEEWFSDTVTAVIV----P----SHINSSEIVRRAWQRYNLSLG-LG-----LNKVAG-------KVFRIGHL  351 (401)
Q Consensus       293 g~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~l~~~L~~~~~i~v~-~g-----~~~~~~-------~~~Ri~~~  351 (401)
                      |+++..+-++    .-+.+..    |    +..+++.++..|..+.||... .|     .++..+       ..+|+...
T Consensus       347 GVpi~~paGG----Havfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltip  422 (471)
T COG3033         347 GVPIVQPAGG----HAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIP  422 (471)
T ss_pred             CCeeEecCCC----ceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEecc
Confidence            9998765332    2222332    2    224677888888877788743 22     222221       34899654


Q ss_pred             c-cCCHHHHHHHHHHHHHHHHh
Q 015729          352 G-HLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       352 ~-~~~~~di~~~~~~i~~~l~~  372 (401)
                      - +.|.+-+|..+++++.+.+.
T Consensus       423 RrtYt~~HmD~V~~a~~~l~e~  444 (471)
T COG3033         423 RRTYTQTHMDFVIEAFKALKEN  444 (471)
T ss_pred             ccccchhHHHHHHHHHHHHHhc
Confidence            3 66889999999999988764

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=99.31  E-value=4.2e-10  Score=97.40  Aligned_cols=345  Identities=13%  Similarity=0.083  Sum_probs=196.5

Q ss_pred             CCCCC-CCCcccccC----CCcCChHHHHHHHccCcCCCCC--ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHH
Q 015729            2 DYMYA-PGKNHLFVP----GPVHIPDQVIRAMNRNNEDYRS--PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWE   74 (401)
Q Consensus         2 ~~~~~-~~~~~~~~~----~p~~~~~~v~~a~~~~~~~~~~--~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~   74 (401)
                      .||+- .+.-||++-    -....+|+|++|...+......  .-..+...++.+.|..-+  +.-+.++|+++|++|+.
T Consensus        39 QYmfDE~g~~yLDCInNVaHvghchp~VV~A~~kQmat~~tN~RFlhd~lv~cA~~l~stl--PeLsvc~F~NSGSEAND  116 (452)
T KOG1403|consen   39 QYMFDEEGTRYLDCINNVAHVGHCHPEVVRAGAKQMATISTNNRFLHDELVQCARTLTSTL--PELSVCFFVNSGSEAND  116 (452)
T ss_pred             ceeeccCcccHHHHhhhhhhcccCCHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHhhcC--CCceEEEEecCCchhhH
Confidence            34433 334444443    3566778888888775432211  111122223333322221  22244788999999999


Q ss_pred             HHHhc--cCCCCCeEEEEcCCcchHH---H----HHHHHHcCC-c--EEEEe-CCC--CCC-------------CChHHH
Q 015729           75 SALTN--TLSPGDRIISFLIGQFSLL---W----IDQQQRLNF-N--VDVVE-SDW--GEG-------------AKLDVL  126 (401)
Q Consensus        75 ~~~~~--~~~~gd~vl~~~~~~~~~~---~----~~~~~~~g~-~--~~~v~-~~~--~~~-------------~d~~~l  126 (401)
                      ++++-  -+.+...+++.+..|+++.   +    .+.-+..+. +  .+.|. ++.  .+.             .-.+.+
T Consensus       117 LALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~v  196 (452)
T KOG1403|consen  117 LALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPV  196 (452)
T ss_pred             HHHHHHHhhcccCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhhhhhHH
Confidence            98733  3445556777777777654   1    111122222 2  22222 211  111             112344


Q ss_pred             HHHHhc--cCCCCceEEEEEecCCCcccccch-HHHHHHhhh-cCCCcEEEEecccccCcc----eeccC--cccceEEE
Q 015729          127 ASKLAA--DTAHTIKAICIVHNETATGVTNNL-SKVRKLLDE-YRHPALFLVDGVSSICAI----DFRMD--EWGIDVAL  196 (401)
Q Consensus       127 e~~~~~--~~~~~~~~i~~~~~~n~tG~~~~l-~~i~~l~~~-~~~~~~li~D~a~~~~~~----~~~~~--~~~~di~~  196 (401)
                      ++.+..  ..+..+.+++....++-.|.+.|. ....++++. ++.|.+.|.|+++..+..    ...++  ..=+||++
T Consensus       197 k~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVt  276 (452)
T KOG1403|consen  197 KEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVT  276 (452)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchhe
Confidence            554432  122346667777777888888763 345555555 459999999999864321    11112  22367776


Q ss_pred             ecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHH
Q 015729          197 TGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE  276 (401)
Q Consensus       197 ~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~  276 (401)
                      ..  |.++.+-+.+.++..++..+.+......  |+              ..+.-++..++...+.++..+.+   ++.+
T Consensus       277 mg--KpmGNGhPVa~VattkeIA~Af~atgv~--YF--------------NTyGGnPVsCAv~laVm~v~e~E---~Lq~  335 (452)
T KOG1403|consen  277 MG--KPMGNGHPVAAVATTKEIAQAFHATGVE--YF--------------NTYGGNPVSCAVGLAVMRVCEDE---NLQE  335 (452)
T ss_pred             ec--ccCCCCCeeeEEeccHHHHHHhccccce--eh--------------hccCCCchhHHHHHHHHHHHhhh---hHHH
Confidence            55  8887677789999999998877654321  11              12234445556667777766654   4666


Q ss_pred             HHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEc--------CCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEE
Q 015729          277 RHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIV--------PSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVF  346 (401)
Q Consensus       277 ~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~  346 (401)
                      ..++..++|...|+++  ..++.+.-  ...+.++.+.+        |+...+.-+..+|++.++|.+..-..  ..+.+
T Consensus       336 ha~~vG~~L~~lL~~~k~kh~~IGDv--RGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGP--h~Nil  411 (452)
T KOG1403|consen  336 HAQQVGEKLEVLLRRLKQKHECIGDV--RGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGP--HRNIL  411 (452)
T ss_pred             HHHHHHHHHHHHHHHHhhhccceecc--ccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCCC--CCcee
Confidence            6777777777777765  44444432  23344444543        11112335677788888888764322  35678


Q ss_pred             EEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          347 RIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       347 Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .|-+.-+.++++.++++..++++|..+
T Consensus       412 KiKPPmCFneena~e~v~~ld~iLT~m  438 (452)
T KOG1403|consen  412 KIKPPMCFNEENADEFVLGLDEILTVM  438 (452)
T ss_pred             ecCCCcccChhhHHHHHHHHHHHHHHH
Confidence            887766789999999999999988643

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=99.23  E-value=1.5e-09  Score=103.06  Aligned_cols=319  Identities=15%  Similarity=0.089  Sum_probs=195.1

Q ss_pred             cHHHHHHHHHHHHHHHhcCCCCceEEec-CChhH---HHHHHHhccC-CCCC---eE-EEEcCCcchHHHHHHHHHcCCc
Q 015729           39 AVPALTKTLLEDIKKIFKTTSGTPFLIP-TTGTG---AWESALTNTL-SPGD---RI-ISFLIGQFSLLWIDQQQRLNFN  109 (401)
Q Consensus        39 ~~~~~~~~l~~~la~~~g~~~~~~i~~~-~g~t~---a~~~~~~~~~-~~gd---~v-l~~~~~~~~~~~~~~~~~~g~~  109 (401)
                      ++.+.+.+|++.+.++.|-+.   +.+. ++|.+   |-..++++.+ .+|+   +| +++... ++... ..+...|.+
T Consensus       579 GY~~lf~~Le~~Lc~iTG~D~---~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSA-HGTNP-ASA~Magmk  653 (1001)
T KOG2040|consen  579 GYQQLFTELEKDLCEITGFDS---FSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSA-HGTNP-ASAAMAGMK  653 (1001)
T ss_pred             hHHHHHHHHHHHhheeecccc---eeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecc-cCCCh-hhHHhcCCE
Confidence            466778899999999988876   4453 33333   2333455543 3332   33 444443 43332 346778999


Q ss_pred             EEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccccc-chHHHHHHhhhcCCCcEEEEecccccC-cceecc
Q 015729          110 VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN-NLSKVRKLLDEYRHPALFLVDGVSSIC-AIDFRM  187 (401)
Q Consensus       110 ~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~-~l~~i~~l~~~~~~~~~li~D~a~~~~-~~~~~~  187 (401)
                      ++.|.++.++.+|..+|+++.++.. ++..+++++.|++ .|... .++++.++.++  +|.-|..|+|---. .--...
T Consensus       654 vvpV~~~~~G~id~~dLk~kaekh~-~~Laa~MvTYPST-~GvfE~~i~d~cd~iHe--hGGQVYlDGANMNAqVGlc~p  729 (1001)
T KOG2040|consen  654 VVPVGCDANGNIDMVDLKAKAEKHK-DNLAALMVTYPST-HGVFEEGIDDICDIIHE--HGGQVYLDGANMNAQVGLCRP  729 (1001)
T ss_pred             EEEeeccCCCCccHHHHHHHHHHhh-hhhheeEEecccc-cccccccHHHHHHHHHh--cCCEEEecCCCccceecccCC
Confidence            9999999999999999999988755 5678889998765 56665 58999999999  99999999873210 001234


Q ss_pred             CcccceEEEecCCCccc-----CCCcceEEEecHHHHHHhccCCCCcc-ccchHHHHHHhhcCCCCCCCCcHHHHHHHHH
Q 015729          188 DEWGIDVALTGSQKALS-----LPTGMGIVCASPKALEASKTAKSVRV-FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRA  261 (401)
Q Consensus       188 ~~~~~di~~~s~~K~l~-----g~~g~G~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~  261 (401)
                      .+.|.|+--...||+|+     |++|+|-+.+++.+..-++.....+. ...-........+..  .++..++  ...++
T Consensus       730 Gd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP--~Gsa~IL--pISwa  805 (1001)
T KOG2040|consen  730 GDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAP--WGSALIL--PISWA  805 (1001)
T ss_pred             ccccccceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccC--CCcceee--hhHHH
Confidence            46779999999999985     34677888887776544433221100 000000001111111  1112221  12244


Q ss_pred             HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEc-----CCCCCHHHHHHHHHhhCCeEEcc
Q 015729          262 ALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV-----PSHINSSEIVRRAWQRYNLSLGL  336 (401)
Q Consensus       262 al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~L~~~~~i~v~~  336 (401)
                      =++.....|+...-+...-++.|+.++|+.- ++++.......-..-+.+.+     ..++++.+++++|.+ +|..-..
T Consensus       806 YikmMG~~GL~~as~~AiLNaNYMakRLe~h-Ykil~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~D-YgFHaPT  883 (1001)
T KOG2040|consen  806 YIKMMGSGGLKDASKIAILNANYMAKRLESH-YKILFRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLMD-YGFHAPT  883 (1001)
T ss_pred             HHHHhcccccchhhHHHhhhhHHHHHHHhhc-cceeEecCCcceeeeeeeechhhccccCCcHHHHHHHHHh-ccCCCCc
Confidence            4455556678777777888999999999884 33322211111111111222     135788899999975 4654322


Q ss_pred             CCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          337 GLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       337 g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ...+. .+.+=|-+....+++|+|++++++-.+.+|+
T Consensus       884 mswPV-~gtLMIEPTESE~k~ElDRfcdAliSIreEI  919 (1001)
T KOG2040|consen  884 MSWPV-AGTLMIEPTESEDKAELDRFCDALISIREEI  919 (1001)
T ss_pred             ccccc-CCceEeccCccccHHHHHHHHHHHHHHHHHH
Confidence            23333 4456665655566889999999987665554

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=99.02  E-value=3.8e-08  Score=93.67  Aligned_cols=290  Identities=14%  Similarity=0.119  Sum_probs=182.0

Q ss_pred             HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc-cCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCC
Q 015729           44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN-TLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEG  120 (401)
Q Consensus        44 ~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~-~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~  120 (401)
                      .-..+-+++++.|.+-.. ..+..-||.|-+++..+ -..++++.++....|+...  ....+..+|++++..       
T Consensus       165 llNyQTmi~dlTGL~~aN-ASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~-------  236 (1001)
T KOG2040|consen  165 LLNYQTMITDLTGLPMAN-ASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVS-------  236 (1001)
T ss_pred             HhhhHHhhhhccCCcccc-hhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhhccccccceeEEec-------
Confidence            335677788999987443 44455567776665433 3456677888888877654  222233344443332       


Q ss_pred             CChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCC
Q 015729          121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQ  200 (401)
Q Consensus       121 ~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~  200 (401)
                       |+++.... .    +.+..+++-.| +.-|.+.|..++++.+++  .+.++++-.---..++--...++|+||.++|++
T Consensus       237 -~~~~~~~s-~----~~v~gvlvQYP-~t~G~i~d~~el~~~a~~--~~s~vv~atDLLaLtiLrpPgefGaDIavGSsQ  307 (1001)
T KOG2040|consen  237 -DIKEADYS-S----KDVSGVLVQYP-DTEGSVLDFDELVELAHA--NGSLVVMATDLLALTILRPPGEFGADIAVGSSQ  307 (1001)
T ss_pred             -CHHHhhcc-c----cceeEEEEEcC-CCCCcccCHHHHHHHhhc--cCceEEEeehhhHHHccCChhhcCceeeecccc
Confidence             22222111 1    23455665555 557999999999999999  888766532211122333456789999999999


Q ss_pred             CcccCCCc-----ceEEEecHHHHHHhccCCCC-----------ccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHH
Q 015729          201 KALSLPTG-----MGIVCASPKALEASKTAKSV-----------RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALD  264 (401)
Q Consensus       201 K~l~g~~g-----~G~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~  264 (401)
                      . |+.|.|     .|+++++.++.+.++.....           ....+..++..+.++.+     +++..+-++.+-+.
T Consensus       308 R-FGVPlGYGGPHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKAT-----SNICTAQALLANma  381 (1001)
T KOG2040|consen  308 R-FGVPLGYGGPHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKAT-----SNICTAQALLANMA  381 (1001)
T ss_pred             c-cCccccCCCchHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccc-----hhhhHHHHHHHHHH
Confidence            8 545544     36888888887776655421           11123334555555554     66654444444433


Q ss_pred             HH-----HHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCC
Q 015729          265 LI-----FEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLN  339 (401)
Q Consensus       265 ~~-----~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~  339 (401)
                      .+     ..+|++.+.++....+..|...|+..|.++...  .+..  .+.+++ .. +.+++..+..++ +|-++    
T Consensus       382 AmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~aghel~~k--~fFD--TLkI~~-~~-s~~~~l~rA~~~-~iNlr----  450 (1001)
T KOG2040|consen  382 AMYAIYHGPHGLKEIARRVHNLTLILAEGLKNAGHELQHK--PFFD--TLKIRC-GC-SAEEVLDRAAKR-QINLR----  450 (1001)
T ss_pred             HHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhcchhhccc--cccc--eEEEEe-cC-cHHHHHHHHHhh-cCceE----
Confidence            22     245799999999999999999999988776543  1122  233555 22 567777776554 55544    


Q ss_pred             CCCCcEEEEeecccCCHHHHHHHHHHHH
Q 015729          340 KVAGKVFRIGHLGHLNELQLLGCLAGVE  367 (401)
Q Consensus       340 ~~~~~~~Ri~~~~~~~~~di~~~~~~i~  367 (401)
                      ....+.+-++.-.+.+++|+|.++..+.
T Consensus       451 ~~ed~tigvslDETv~~~DvddLl~vf~  478 (1001)
T KOG2040|consen  451 LVEDGTIGVSLDETVTEKDVDDLLWVFN  478 (1001)
T ss_pred             EeecCceEEeecccccHHHHHHHHHHHc
Confidence            2345678898888999999999998886

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=98.92  E-value=2.1e-07  Score=83.18  Aligned_cols=282  Identities=13%  Similarity=0.067  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHh---c-C-CCCceEEecCChhHHHHHHHhccCCC------CCeEEEEcCCcchHHHHHHHHHcCC-cEEE
Q 015729           45 KTLLEDIKKIF---K-T-TSGTPFLIPTTGTGAWESALTNTLSP------GDRIISFLIGQFSLLWIDQQQRLNF-NVDV  112 (401)
Q Consensus        45 ~~l~~~la~~~---g-~-~~~~~i~~~~g~t~a~~~~~~~~~~~------gd~vl~~~~~~~~~~~~~~~~~~g~-~~~~  112 (401)
                      .||++.|+++.   | + ....-+++..|+|+.+++++.++-..      --+|+...|- ++.+ ......+.- ...+
T Consensus        46 ~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPY-Y~~Y-~~qt~~f~s~~y~w  123 (363)
T PF04864_consen   46 PELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPY-YSSY-PEQTDFFDSRLYKW  123 (363)
T ss_dssp             HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS---CHH-HHHCCCT-BTTEEE
T ss_pred             HHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCC-ccch-HHHHHhccccCccc
Confidence            34555554443   2 1 23344999999999999988765322      1367777774 4433 122222221 1222


Q ss_pred             EeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccc
Q 015729          113 VESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGI  192 (401)
Q Consensus       113 v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~  192 (401)
                      -- +      ...+.   ++++ ..+-+=+++.||||.|.+-.     .+++.  .+..+|.|-|+.+.....-.....-
T Consensus       124 ~G-d------a~~~~---~~~~-~~~~IElVTSPNNPDG~lr~-----~V~~g--~~~k~I~D~AYYWPhyTpI~~~aD~  185 (363)
T PF04864_consen  124 AG-D------ASNFK---NSDN-PSPYIELVTSPNNPDGQLRE-----AVLNG--SSGKVIHDLAYYWPHYTPITAPADH  185 (363)
T ss_dssp             EE-E------CCCGT---T-S--CCGEEEEEESS-TTT-----------SSTT--TEEEEEEE-TT-STTTS---S-B--
T ss_pred             cc-c------HHhhc---cCCC-CCCeEEEEeCCCCCcccccc-----hhcCC--CCcceeeeeeeecccccccCCCCCC
Confidence            21 1      11111   1111 23445599999999998632     12344  6778999999887653221223346


Q ss_pred             eEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh-
Q 015729          193 DVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-  269 (401)
Q Consensus       193 di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~-  269 (401)
                      |+.+|+.+| +.|..|  +|+.+++++...+-..              .+++..+  . ..+--...-+...|+.+... 
T Consensus       186 DiMLFT~SK-~TGHAGSR~GWAlVKD~~Va~kM~--------------~y~~lnT--i-GvS~dsQLRa~kiLk~v~~~~  247 (363)
T PF04864_consen  186 DIMLFTLSK-LTGHAGSRFGWALVKDEEVAKKMT--------------KYMELNT--I-GVSRDSQLRALKILKVVLDGY  247 (363)
T ss_dssp             SEEEEEHHH-HCS-GGG-EEEEEES-HHHHHHHH--------------HHHHHHC--S-S--HHHHHHHHHHHHHHHHHC
T ss_pred             ceEEEEEec-ccCccccccceeeecCHHHHHHHH--------------HHHHHhc--c-cCcHHHHHHHHHHHHHHHhcc
Confidence            899999999 456665  5999999876432211              1111111  0 12221111122222222211 


Q ss_pred             ----c----HHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc---------cCCceeEEEEcCCCCCHHHHHHHHHhhCC
Q 015729          270 ----G----LENVIERHRRLGKATRLAVEAW-GLKNCTQKEE---------WFSDTVTAVIVPSHINSSEIVRRAWQRYN  331 (401)
Q Consensus       270 ----g----~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  331 (401)
                          +    ++--.+..+++-+.|++.+.+- .+.+....+.         .-++.+.|++.... ...+....|+ +.+
T Consensus       248 ~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~e-ed~DC~~~l~-~~~  325 (363)
T PF04864_consen  248 GTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCERE-EDEDCYAVLR-EAK  325 (363)
T ss_dssp             CHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSC-GGSSHHHHHH-CTT
T ss_pred             cCCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCc-ccccHHHHHH-hCC
Confidence                1    2222333334444444444332 2222111111         12567899998432 2345555565 459


Q ss_pred             eEEccCCCC-CCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          332 LSLGLGLNK-VAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       332 i~v~~g~~~-~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      |..+.|... ...+++|||..-  +++|+|.++++|..
T Consensus       326 I~tr~G~~fga~~ryVRlSml~--~~d~Fd~l~~rL~~  361 (363)
T PF04864_consen  326 IITRSGVLFGADSRYVRLSMLK--RDDDFDQLLERLSK  361 (363)
T ss_dssp             EEEEEGGGGTS-TTEEEEESSS---HHHHHHHHHHHHC
T ss_pred             cccCCCCccCCCCCeEEEeccC--CHHHHHHHHHHHHh
Confidence            999998442 356789999876  89999999999864

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=98.50  E-value=0.00012  Score=64.57  Aligned_cols=270  Identities=14%  Similarity=0.118  Sum_probs=149.1

Q ss_pred             EecCChhHHHHHHH---hccCCCCCeEEEEcCCcchHHHHHHHHHcCC-cEEEEeC--CCCCCCChHHHHHHHhccCCCC
Q 015729           64 LIPTTGTGAWESAL---TNTLSPGDRIISFLIGQFSLLWIDQQQRLNF-NVDVVES--DWGEGAKLDVLASKLAADTAHT  137 (401)
Q Consensus        64 ~~~~g~t~a~~~~~---~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~-~~~~v~~--~~~~~~d~~~le~~~~~~~~~~  137 (401)
                      +-+-|||.|+.++.   ..+++ ...|.++.|.+..+.  .+++..|. ++...+.  .++..+|.+-+-..+..-+ + 
T Consensus       103 vQslsGTGAl~~~A~Fl~~~~~-~~~VY~SnPTW~nH~--~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~AP-e-  177 (410)
T KOG1412|consen  103 VQSLSGTGALRIAADFLATFYN-KNTVYVSNPTWENHH--AIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESAP-E-  177 (410)
T ss_pred             eeeccccchhhhhHHHHHHhcc-cceeEecCCchhHHH--HHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhCC-C-
Confidence            33568899988754   22344 456889888666554  45666774 3333332  2234678888887776544 2 


Q ss_pred             ceEEEEE--ecCCCcccccchH---HHHHHhhhcCCCcEEEEecccccCc-ceeccCc--------ccc-eEEEecCCCc
Q 015729          138 IKAICIV--HNETATGVTNNLS---KVRKLLDEYRHPALFLVDGVSSICA-IDFRMDE--------WGI-DVALTGSQKA  202 (401)
Q Consensus       138 ~~~i~~~--~~~n~tG~~~~l~---~i~~l~~~~~~~~~li~D~a~~~~~-~~~~~~~--------~~~-di~~~s~~K~  202 (401)
                       +.+++.  ..+||||.-..-+   .|++..++  .+.+.+.|-++...+ -..+.+.        .|. -+++-|..|.
T Consensus       178 -~si~iLhaCAhNPTGmDPT~EQW~qia~vik~--k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKN  254 (410)
T KOG1412|consen  178 -GSIIILHACAHNPTGMDPTREQWKQIADVIKS--KNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKN  254 (410)
T ss_pred             -CcEEeeeccccCCCCCCCCHHHHHHHHHHHHh--cCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhh
Confidence             333333  3489999887644   46666666  899999998865322 2222222        234 3566789999


Q ss_pred             ccCCCc--ce---EEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHH--HHHhc---HH
Q 015729          203 LSLPTG--MG---IVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL--IFEEG---LE  272 (401)
Q Consensus       203 l~g~~g--~G---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~--~~~~g---~~  272 (401)
                      + |..+  .|   ++.-++..+..+.            .++.....+.  .++|+-.++--+...|.-  +.+++   ++
T Consensus       255 f-GlYneRvGnltvv~~n~a~i~~v~------------SQl~lviR~~--~SNPPAyGArIV~kvL~tP~lre~W~~sik  319 (410)
T KOG1412|consen  255 F-GLYNERVGNLTVVVNNPAVIAGVK------------SQLTLVIRSN--WSNPPAYGARIVHKVLSTPELREQWIQSIK  319 (410)
T ss_pred             c-ccccccccceEEEecChhHHHHHH------------HHHHHHHhhc--cCCCcchhhHHHHHHhcCHHHHHHHHHHHH
Confidence            8 4432  33   4444444433222            1111111111  223444333333333321  11221   44


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCC----ccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEE
Q 015729          273 NVIERHRRLGKATRLAVEAWGL----KNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRI  348 (401)
Q Consensus       273 ~~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri  348 (401)
                      ....|+.+.+..|++.|..++-    .-...    +.+ ++  .+ .|++..++ +.|.+++.|++.      ..+  |+
T Consensus       320 ~MssRI~~MR~aLrd~L~aL~TPGtWDHI~~----QiG-MF--Sy-TGLtp~qV-~~li~~h~vyLl------~~G--RI  382 (410)
T KOG1412|consen  320 TMSSRIKKMRTALRDHLVALKTPGTWDHITQ----QIG-MF--SY-TGLTPAQV-DHLIENHKVYLL------SDG--RI  382 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHh----hcc-ce--ee-cCCCHHHH-HHHHHhceEEEe------cCC--cE
Confidence            5556666666777777766532    11111    222 33  33 56666555 667777788864      234  66


Q ss_pred             eecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          349 GHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       349 ~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      +.++ ++..-+|+..++|.+....+.
T Consensus       383 nisG-LN~~NveyVAkAIde~Vr~~~  407 (410)
T KOG1412|consen  383 NISG-LNMKNVEYVAKAIDETVRAIK  407 (410)
T ss_pred             eeec-cccccHHHHHHHHHHHHHhhc
Confidence            6555 677788999999998877553

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=98.45  E-value=2.6e-05  Score=69.71  Aligned_cols=214  Identities=18%  Similarity=0.154  Sum_probs=132.4

Q ss_pred             hHHHHHHHhccCC--CCceEEEEEecCCCccccc--c--hHHHHHHhhhcCCCcEEEEecccccCcc----e----eccC
Q 015729          123 LDVLASKLAADTA--HTIKAICIVHNETATGVTN--N--LSKVRKLLDEYRHPALFLVDGVSSICAI----D----FRMD  188 (401)
Q Consensus       123 ~~~le~~~~~~~~--~~~~~i~~~~~~n~tG~~~--~--l~~i~~l~~~~~~~~~li~D~a~~~~~~----~----~~~~  188 (401)
                      ++++|+.+.+...  ..+.++++...++..|.-.  |  ...+++++++  |++.+|+|+++..|..    +    .+.+
T Consensus       255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~K--h~v~fivDEVQTGgGaTGk~WaHehw~l~  332 (484)
T KOG1405|consen  255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKK--HGVAFIVDEVQTGGGATGKFWAHEHWNLD  332 (484)
T ss_pred             HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHh--cCeEEEeeeeecCCCccCceeeehhcCCC
Confidence            4567777654221  1356778888888777654  2  6789999999  9999999999875532    1    1111


Q ss_pred             cccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHH
Q 015729          189 EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFE  268 (401)
Q Consensus       189 ~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~  268 (401)
                       ..+|+++||  |-|.  .| |+. -.++    +++..+...+               ..|--.+.-..-+.++++.+++
T Consensus       333 -~PpD~vTFS--KK~q--~g-Gff-h~~~----frpn~pYrif---------------NTWmGdP~k~lll~~vv~~I~~  386 (484)
T KOG1405|consen  333 -SPPDVVTFS--KKFQ--TG-GFF-HDEE----FRPNEPYRIF---------------NTWMGDPSKNLLLEEVVQEIKR  386 (484)
T ss_pred             -CCccceehh--hhhh--cC-ccc-cCcc----cCCCchHHHh---------------hhhcCChHHHHHHHHHHHHHhH
Confidence             247888887  5452  22 322 2222    2222111111               0111222333456677777766


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHcCCccccC-CCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEE
Q 015729          269 EGLENVIERHRRLGKATRLAVEAWGLKNCTQ-KEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFR  347 (401)
Q Consensus       269 ~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~R  347 (401)
                      +   .+.++.....+.|.++|.++.-+.... +.-...++++++.+|.+.-.+.++..++-+ |+.+..+    ...-+|
T Consensus       387 ~---~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGrGTF~a~d~ps~~~Rdk~i~~~~~n-Gv~~GGC----g~~siR  458 (484)
T KOG1405|consen  387 E---DLLNNVAHVGKALLKGLLELQAKYPGKINNLRGRGTFIAWDCPSGSIRDKLILIARLN-GVNLGGC----GDKSIR  458 (484)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHhCchhhhcccccceEEEEeCCChHHHHHHHHHHHHc-Cceeccc----ccceee
Confidence            4   578888889999999998862222111 112246789999998765455677767655 8876422    234578


Q ss_pred             EeecccCCHHHHHHHHHHHHHHHHh
Q 015729          348 IGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       348 i~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      +-+....++.-.+-+++++++.++.
T Consensus       459 fRPsLvf~~~Ha~i~l~~~~k~l~~  483 (484)
T KOG1405|consen  459 FRPSLVFRKHHADIFLDIFDKILAG  483 (484)
T ss_pred             eccceeehhhhHHHHHHHHHHHhcc
Confidence            8777767888899999999998864

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=98.40  E-value=2.4e-05  Score=69.76  Aligned_cols=323  Identities=15%  Similarity=0.069  Sum_probs=172.9

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCC--CccHHHHHHHHHHHHHHHh-cCC----CCceEE--ecCChhHHHHHHH--
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYR--SPAVPALTKTLLEDIKKIF-KTT----SGTPFL--IPTTGTGAWESAL--   77 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~l~~~la~~~-g~~----~~~~i~--~~~g~t~a~~~~~--   77 (401)
                      +.|.+--|...+.+.|.+|-++-.....  .|.+.....|+.+..+++. |..    .+..++  -+-+||.|+-...  
T Consensus        60 GaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~F  139 (427)
T KOG1411|consen   60 GAYRDDNGKPYVLPSVRKAEQQLASLSLDKEYLPITGLAEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEF  139 (427)
T ss_pred             cceecCCCCeeeeHHHHHHHHHHhhhcccchhccccchHHHHHHHHHHhhcCCchhhhccceeEEEeccCcchhhHHHHH
Confidence            3455555555555666666554322111  1222333556666555544 322    111232  2557788876543  


Q ss_pred             hccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC--CCCCCCChHHHHHHHhccCCCCceEEEEE--ecCCCcccc
Q 015729           78 TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES--DWGEGAKLDVLASKLAADTAHTIKAICIV--HNETATGVT  153 (401)
Q Consensus        78 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~le~~~~~~~~~~~~~i~~~--~~~n~tG~~  153 (401)
                      .+.+-++..|.+++|.+- ++ .......|+.+.....  .....+|.+-+-+.+.+-+ +  ..+++.  ..|||||+-
T Consensus       140 l~~f~~~~~I~ip~PTWg-Nh-~~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p-~--gs~ilLhaCaHNPTGvD  214 (427)
T KOG1411|consen  140 LARFYPSRDIYIPDPTWG-NH-KNIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAP-E--GSIILLHACAHNPTGVD  214 (427)
T ss_pred             HHhhccccceeecCCccc-cc-CccccccCcceeeeeeccccccccchHHHHHHHhcCC-C--CcEEEeehhhcCCCCCC
Confidence            333456888999998533 33 2345566776554443  3344678877666666544 2  233443  458999987


Q ss_pred             cc---hHHHHHHhhhcCCCcEEEEecccccCc-ceeccC---------cccceEEEecCCCcccCCCc--c---eEEEec
Q 015729          154 NN---LSKVRKLLDEYRHPALFLVDGVSSICA-IDFRMD---------EWGIDVALTGSQKALSLPTG--M---GIVCAS  215 (401)
Q Consensus       154 ~~---l~~i~~l~~~~~~~~~li~D~a~~~~~-~~~~~~---------~~~~di~~~s~~K~l~g~~g--~---G~l~~~  215 (401)
                      ..   .++|.++.++  .+.+-+.|.++..++ -..+.+         +.+--.++-|..|.+ |..|  .   .+++-+
T Consensus       215 Pt~eqw~ki~~~~~~--k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNM-GLYgERvGa~svvc~~  291 (427)
T KOG1411|consen  215 PTKEQWEKISDLIKE--KNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNM-GLYGERVGALSVVCKD  291 (427)
T ss_pred             ccHHHHHHHHHHhhh--ccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhc-chhhhccceeEEEecC
Confidence            75   5567777777  889999998875332 112211         223345667899998 4544  2   455555


Q ss_pred             HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHH---HHHHHh--cHHHHHHHHHHHHHHHHHHHH
Q 015729          216 PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAAL---DLIFEE--GLENVIERHRRLGKATRLAVE  290 (401)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al---~~~~~~--g~~~~~~~~~~~~~~l~~~L~  290 (401)
                      .+...+...            +.+.+..+.  ..+||..+.-.+...+   ++..++  .++....++...++.+.+.|+
T Consensus       292 ad~A~rV~S------------Qlk~liRpm--YSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~  357 (427)
T KOG1411|consen  292 ADEAKRVES------------QLKILIRPM--YSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALE  357 (427)
T ss_pred             HHHHHHHHH------------HHHHHhccc--ccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhh
Confidence            554433321            111111111  2234443221111111   111111  256677788888888999998


Q ss_pred             HcCCcc----ccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHH
Q 015729          291 AWGLKN----CTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGV  366 (401)
Q Consensus       291 ~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i  366 (401)
                      ..|...    +..    +.+ ++  -+ .+++.+++ +.|.+++.|+..      ..+  |||..+ ++..-++++.++|
T Consensus       358 ~~gs~~~W~hI~~----QIG-MF--~f-Tgl~peQv-~~l~ke~~iYmT------~dG--RiS~aG-~ss~nV~yLa~ai  419 (427)
T KOG1411|consen  358 KEGSPGNWSHITK----QIG-MF--CF-TGLNPEQV-DWLTKEYHIYLT------KDG--RISMAG-LSSSNVPYLADAI  419 (427)
T ss_pred             cCCCCccHHHHHH----hhh-ee--ee-cCCCHHHH-HHHHhhheeeec------cCc--eEeecc-ccccCCcccchhh
Confidence            764332    221    233 22  23 45565555 556666677754      123  676655 6666778888877


Q ss_pred             HHHHH
Q 015729          367 EMILK  371 (401)
Q Consensus       367 ~~~l~  371 (401)
                      .++-+
T Consensus       420 h~vtk  424 (427)
T KOG1411|consen  420 HAVTK  424 (427)
T ss_pred             HhHhc
Confidence            66543

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=97.62  E-value=0.00025  Score=57.67  Aligned_cols=55  Identities=13%  Similarity=0.076  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHhc--CC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcc
Q 015729           41 PALTKTLLEDIKKIFK--TT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF   95 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g--~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~   95 (401)
                      .++.+.+.+.+.+.+|  .+ .+++|++++|+++|++.++.+++.|||.|++++|.|+
T Consensus        95 ~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~  152 (153)
T PLN02994         95 ANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYA  152 (153)
T ss_pred             HHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence            3444444455555545  22 3456999999999999999999999999999999765

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=96.39  E-value=0.14  Score=44.62  Aligned_cols=173  Identities=14%  Similarity=0.155  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHhcCCCCceEEecCChh-HHHHHHHhccC--CC-CCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCC
Q 015729           44 TKTLLEDIKKIFKTTSGTPFLIPTTGT-GAWESALTNTL--SP-GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE  119 (401)
Q Consensus        44 ~~~l~~~la~~~g~~~~~~i~~~~g~t-~a~~~~~~~~~--~~-gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  119 (401)
                      -.++...+-.+.|.-.-...++++-+| ..+.+.+.++-  +| -+-|+.+.-..-|- + +..-..|.+++.++.-.++
T Consensus        59 sne~a~~~i~l~glhav~nc~vvpl~tgmslslc~~s~r~krpkakyiiw~ridqks~-~-ksi~~agfepiiie~i~d~  136 (432)
T KOG3843|consen   59 SNEFAKDAIHLAGLHAVANCFVVPLATGMSLSLCFLSLRHKRPKAKYIIWLRIDQKSC-F-KSIIHAGFEPIIIENILDG  136 (432)
T ss_pred             HHHHHHHHHHHhhhhhhhceeEEeccccccHHHHHHHHhhcCCcccEEEEEecchHHH-H-HHHHhcCCCceeeeccccc
Confidence            345555555566653211133333233 22333333322  23 34455544322221 2 3345578888888743222


Q ss_pred             ---CCChHHHHHHHhccCCCCceEEEEEecCCCcccc-----cchHHHHHHhhhcCCCcEEEEecccccCcce------e
Q 015729          120 ---GAKLDVLASKLAADTAHTIKAICIVHNETATGVT-----NNLSKVRKLLDEYRHPALFLVDGVSSICAID------F  185 (401)
Q Consensus       120 ---~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~-----~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~------~  185 (401)
                         .-|++..++.+.+-.   +..|+..+..  |.-.     ..+++|..+|..  |+++-|+..+|+.-...      .
T Consensus       137 d~l~tdleav~~~iee~g---~dcilci~st--tscfapr~pd~leaiaaica~--~diphivnnayglqsee~i~~iaa  209 (432)
T KOG3843|consen  137 DELITDLEAVEAIIEELG---EDCILCIHST--TSCFAPRSPDNLEAIAAICAA--HDIPHIVNNAYGLQSEECIHKIAA  209 (432)
T ss_pred             hHHHHhHHHHHHHHHHhC---CceEEEEeec--ccccCCCCCchHHHHHHHHHc--cCchhhhccccccchHHHHHHHHH
Confidence               348899999887633   3334444322  2222     238999999999  99999999887654311      1


Q ss_pred             ccCcccceEEEecCCCcccCCCcceEEE-ecHHHHHHhccC
Q 015729          186 RMDEWGIDVALTGSQKALSLPTGMGIVC-ASPKALEASKTA  225 (401)
Q Consensus       186 ~~~~~~~di~~~s~~K~l~g~~g~G~l~-~~~~~~~~~~~~  225 (401)
                      ..+...+|.++-|.-|.|..|-|-+++. .++.++..+.++
T Consensus       210 ~~~~grida~vqsldknf~vpvggaiia~fk~n~iq~iak~  250 (432)
T KOG3843|consen  210 AAECGRIDAFVQSLDKNFMVPVGGAIIAAFKDNFIQEIAKM  250 (432)
T ss_pred             HhhhccHHHHHHHhhhcceeecchhHhhHhHHHHHHHHHHh
Confidence            2223357999999999998777633333 556665555543

>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin)

Probab=87.27  E-value=5.6  Score=30.54  Aligned_cols=89  Identities=16%  Similarity=0.172  Sum_probs=57.9

Q ss_pred             HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEeccc
Q 015729           99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS  178 (401)
Q Consensus        99 ~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~  178 (401)
                      .....+..|.++..++.+    .+.+++.+.+.+   .+++++.++...  +.......++.+..++...++.+++=+.|
T Consensus        20 la~~l~~~G~~v~~~d~~----~~~~~l~~~~~~---~~pd~V~iS~~~--~~~~~~~~~l~~~~k~~~p~~~iv~GG~~   90 (121)
T PF02310_consen   20 LAAYLRKAGHEVDILDAN----VPPEELVEALRA---ERPDVVGISVSM--TPNLPEAKRLARAIKERNPNIPIVVGGPH   90 (121)
T ss_dssp             HHHHHHHTTBEEEEEESS----B-HHHHHHHHHH---TTCSEEEEEESS--STHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred             HHHHHHHCCCeEEEECCC----CCHHHHHHHHhc---CCCcEEEEEccC--cCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence            456677789999888765    356888887766   467888887532  33445667788888776678999988876


Q ss_pred             ccCcceeccC-c-ccceEEEe
Q 015729          179 SICAIDFRMD-E-WGIDVALT  197 (401)
Q Consensus       179 ~~~~~~~~~~-~-~~~di~~~  197 (401)
                      ..... -... . .++|.++.
T Consensus        91 ~t~~~-~~~l~~~~~~D~vv~  110 (121)
T PF02310_consen   91 ATADP-EEILREYPGIDYVVR  110 (121)
T ss_dssp             SGHHH-HHHHHHHHTSEEEEE
T ss_pred             hhcCh-HHHhccCcCcceecC
Confidence            53211 1111 1 46776554

Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=85.30  E-value=30  Score=31.88  Aligned_cols=135  Identities=18%  Similarity=0.204  Sum_probs=78.4

Q ss_pred             HHHHHHHhccCCCCCeEEEEcCCcchHH----HHHHHHHcCCcEEEEeCCCCCCCCh-----HHHHHHHhccCCCCceEE
Q 015729           71 GAWESALTNTLSPGDRIISFLIGQFSLL----WIDQQQRLNFNVDVVESDWGEGAKL-----DVLASKLAADTAHTIKAI  141 (401)
Q Consensus        71 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~----~~~~~~~~g~~~~~v~~~~~~~~d~-----~~le~~~~~~~~~~~~~i  141 (401)
                      ..+--+..-+.+.|.+|++....+|--.    ...++++.|+.++.-+  ++  -||     ++++.+..+    ...++
T Consensus       154 TTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~--~G--~DpAaVafDAi~~Akar----~~Dvv  225 (340)
T COG0552         154 TTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGK--EG--ADPAAVAFDAIQAAKAR----GIDVV  225 (340)
T ss_pred             hHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccC--CC--CCcHHHHHHHHHHHHHc----CCCEE
Confidence            3444444446678999998877666543    3456778888777654  22  244     566666553    45777


Q ss_pred             EEEec---CCCcccccchHHHHHHhhh----cCCCcEEEEecccccCcc----eeccCcccceEEEecCCCcccCCCcce
Q 015729          142 CIVHN---ETATGVTNNLSKVRKLLDE----YRHPALFLVDGVSSICAI----DFRMDEWGIDVALTGSQKALSLPTGMG  210 (401)
Q Consensus       142 ~~~~~---~n~tG~~~~l~~i~~l~~~----~~~~~~li~D~a~~~~~~----~~~~~~~~~di~~~s~~K~l~g~~g~G  210 (401)
                      ++...   ||-..-+.++++|.+++++    .||.++++.|++.+--++    .|. +..+.|.++.+  |.=++..| |
T Consensus       226 liDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~-eav~l~GiIlT--KlDgtAKG-G  301 (340)
T COG0552         226 LIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFN-EAVGLDGIILT--KLDGTAKG-G  301 (340)
T ss_pred             EEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHH-HhcCCceEEEE--ecccCCCc-c
Confidence            77732   3444444568889999888    245688888987442111    111 22356766665  63333344 4


Q ss_pred             EEE-ecHH
Q 015729          211 IVC-ASPK  217 (401)
Q Consensus       211 ~l~-~~~~  217 (401)
                      .+. +..+
T Consensus       302 ~il~I~~~  309 (340)
T COG0552         302 IILSIAYE  309 (340)
T ss_pred             eeeeHHHH
Confidence            443 4444

>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]

Probab=84.71  E-value=9.6  Score=34.82  Aligned_cols=112  Identities=14%  Similarity=0.130  Sum_probs=65.8

Q ss_pred             EEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCC----------------------C
Q 015729           63 FLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE----------------------G  120 (401)
Q Consensus        63 i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~----------------------~  120 (401)
                      ..+++||-.-+.+-+...+.-.-.++-+-.+..+..+....+..|++..+++...++                      .
T Consensus        31 ~~~~aGGKGINVa~vL~~lG~~~~a~GflGg~tg~~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~~Gp~  110 (310)
T COG1105          31 VTKTAGGKGINVARVLKDLGIPVTALGFLGGFTGEFFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEINFPGPE  110 (310)
T ss_pred             ceecCCCCceeHHHHHHHcCCCceEEEecCCccHHHHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEecCCCCC
Confidence            556677776666555444444344454545555544556667777766666653322                      2


Q ss_pred             CChHHHHHHH---hccCCCCceEEEEEecCCCcccccc-hHHHHHHhhhcCCCcEEEEeccc
Q 015729          121 AKLDVLASKL---AADTAHTIKAICIVHNETATGVTNN-LSKVRKLLDEYRHPALFLVDGVS  178 (401)
Q Consensus       121 ~d~~~le~~~---~~~~~~~~~~i~~~~~~n~tG~~~~-l~~i~~l~~~~~~~~~li~D~a~  178 (401)
                      ++.++++..+   +..- .+-.+++++ .+=|.|.-.+ ..+|.++|++  .|..+++|...
T Consensus       111 is~~~~~~~l~~~~~~l-~~~d~Vvls-GSlP~g~~~d~y~~li~~~~~--~g~~vilD~Sg  168 (310)
T COG1105         111 ISEAELEQFLEQLKALL-ESDDIVVLS-GSLPPGVPPDAYAELIRILRQ--QGAKVILDTSG  168 (310)
T ss_pred             CCHHHHHHHHHHHHHhc-ccCCEEEEe-CCCCCCCCHHHHHHHHHHHHh--cCCeEEEECCh
Confidence            3444444433   3211 122344444 5666676665 7899999999  99999999763

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=82.03  E-value=14  Score=35.05  Aligned_cols=95  Identities=9%  Similarity=0.049  Sum_probs=61.9

Q ss_pred             HHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCc--
Q 015729           73 WESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETAT--  150 (401)
Q Consensus        73 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~t--  150 (401)
                      +.-++..+.+.+ +|+..+-+-....+...++++|+....+.+-..+  +++++.+.+++   .+|+++++..+++..  
T Consensus       110 LLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt--~~e~I~~~l~~---~~p~lvVIDSIQT~~s~  183 (456)
T COG1066         110 LLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAET--NLEDIIAELEQ---EKPDLVVIDSIQTLYSE  183 (456)
T ss_pred             HHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCCccceEEehhc--CHHHHHHHHHh---cCCCEEEEeccceeecc
Confidence            333444556666 6666655445555666788888755444443333  78888888876   578999998776542  


Q ss_pred             ------ccccc----hHHHHHHhhhcCCCcEEEEe
Q 015729          151 ------GVTNN----LSKVRKLLDEYRHPALFLVD  175 (401)
Q Consensus       151 ------G~~~~----l~~i~~l~~~~~~~~~li~D  175 (401)
                            |.+.-    -.++.++||+  +|+.+++=
T Consensus       184 ~~~SapGsVsQVRe~t~~L~~~AK~--~~i~~fiV  216 (456)
T COG1066         184 EITSAPGSVSQVREVAAELMRLAKT--KNIAIFIV  216 (456)
T ss_pred             cccCCCCcHHHHHHHHHHHHHHHHH--cCCeEEEE
Confidence                  43332    3568999999  88877663

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=81.49  E-value=51  Score=31.56  Aligned_cols=131  Identities=12%  Similarity=0.100  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHhcCCC-----CceE-EecCChh---HHHHHHHhccCCCCCeEEEEcCCcchHH----HHHHHHHcC
Q 015729           41 PALTKTLLEDIKKIFKTTS-----GTPF-LIPTTGT---GAWESALTNTLSPGDRIISFLIGQFSLL----WIDQQQRLN  107 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~-----~~~i-~~~~g~t---~a~~~~~~~~~~~gd~vl~~~~~~~~~~----~~~~~~~~g  107 (401)
                      ......+.+.+...++.+.     +..+ ++.++|+   ..+..+...+...|.+|.+.+...+...    +...++..|
T Consensus       217 ~~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lg  296 (436)
T PRK11889        217 EEVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG  296 (436)
T ss_pred             HHHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcC
Confidence            3455556666666665331     1223 3333332   2222222334456767766665444321    444555667


Q ss_pred             CcEEEEeCCCCCCCChHHHHHHHhccCC-CCceEEEEEecCCCcccccchHHHHHHhhh-cCCCcEEEEeccc
Q 015729          108 FNVDVVESDWGEGAKLDVLASKLAADTA-HTIKAICIVHNETATGVTNNLSKVRKLLDE-YRHPALFLVDGVS  178 (401)
Q Consensus       108 ~~~~~v~~~~~~~~d~~~le~~~~~~~~-~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~-~~~~~~li~D~a~  178 (401)
                      +.+..+.       +++++.+.+..... .+...|++..+....-....+.++.++.+. .++.+++++|++.
T Consensus       297 ipv~v~~-------d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATt  362 (436)
T PRK11889        297 FEVIAVR-------DEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM  362 (436)
T ss_pred             CcEEecC-------CHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCcc
Confidence            6555432       56677666643210 134677887553322222346677777765 4577888888763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	401
2dr1_A	386	Crystal Structure Of The Ph1308 Protein From Pyroco		1e-38
1vjo_A	393	Crystal Structure Of Alanine--Glyoxylate Aminotrans		2e-37
3isl_A	416	Crystal Structure Of Ureidoglycine-Glyoxylate Amino		6e-36
2huf_A	393	Crystal Structure Of Aedes Aegypti Alanine Glyoxyla		5e-35
3zrp_A	384	Crystal Structure And Substrate Specificity Of A Th		4e-33
1j04_A	392	Structural Mechanism Of Enzyme Mistargeting In Here		9e-33
2ch1_A	396	Structure Of Anopheles Gambiae 3-Hydroxykynurenine		1e-32
1h0c_A	392	The Crystal Structure Of Human Alanine:glyoxylate A		2e-32
3r9a_A	394	Human Alanine-Glyoxylate Aminotransferase In Comple		1e-31
3nnk_A	411	Biochemical And Structural Characterization Of A Ur		2e-30
3kgx_A	393	Crystal Structure Of Putative Aminotransferase (Aah		4e-30
2z9u_A	392	Crystal Structure Of Pyridoxamine-Pyruvate Aminotra		1e-28
2bkw_A	385	Yeast Alanine:glyoxylate Aminotransferase Yfl030w L		1e-26
2yri_A	353	Crystal Structure Of Alanine-pyruvate Aminotransfer		8e-25
1iug_A	352	The Crystal Structure Of Aspartate Aminotransferase		4e-24
3f0h_A	376	Crystal Structure Of Aminotransferase (Rer070207000		7e-15
1m32_A	366	Crystal Structure Of 2-Aminoethylphosphonate Transa		1e-11
3ffr_A	362	Crystal Structure Of A Phosphoserine Aminotransfera		8e-08
1t3i_A	420	Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE De		3e-04

>pdb|2DR1|A Chain A, Crystal Structure Of The Ph1308 Protein From Pyrococcus Horikoshii Ot3 Length = 386

Iteration: 1
 Score =  157 bits (397), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 172/354 (48%), Gaps = 7/354 (1%)
Query: 3   YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTP 62
           Y     K  LF  GPV    +V+  M      +RS     +    +E +++  +   G  
Sbjct: 14  YEMVKPKYKLFTAGPVACFPEVLEIMKVQMFSHRSKEYRKVHMDTVERLREFLEVEKGEV 73
Query: 63  FLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAK 122
            L+P++GTG  E+++ N +S G +++  +IG F   + +  +       V+E + G+  K
Sbjct: 74  LLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPGKAVK 133
Query: 123 LDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICA 182
            + L   L  +    ++A+ I +NET+TGV N L ++ K+  E  H  L  VD VS++  
Sbjct: 134 PEDLDDALRKNP--DVEAVTITYNETSTGVLNPLPELAKVAKE--HDKLVFVDAVSAMGG 189
Query: 183 IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYN 242
            D + D+WG+DV  + SQKA  +P G+ I   S + LE ++       +FD   Y+K+  
Sbjct: 190 ADIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLK 249
Query: 243 LGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKE 301
                P TP +  ++G+  AL +I +  G E  +E + +  K  R  V   GL +   + 
Sbjct: 250 EKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGL-DILAEP 308
Query: 302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLN 355
              S T+TAV+ P  I   E V  A ++    L  G   V  K FRIGH+G++ 
Sbjct: 309 GHESPTITAVLTPPGIKGDE-VYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMK 361

>pdb|1VJO|A Chain A, Crystal Structure Of Alanine--Glyoxylate Aminotransferase (Alr1004) From Nostoc Sp. At 1.70 A Resolution Length = 393

Iteration: 1
 Score =  153 bits (386), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 167/343 (48%), Gaps = 8/343 (2%)
Query: 12  LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
           L  PGP +    V++A N +   +  PA  AL   +   ++ +++T +     +  TGT 
Sbjct: 37  LLGPGPSNAHPSVLQAXNVSPVGHLDPAFLALXDEIQSLLRYVWQTENPLTIAVSGTGTA 96
Query: 72  AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA 131
           A E+ + N + PGD ++  + G F    +D   R   +V  +   WGE   L+ L + L 
Sbjct: 97  AXEATIANAVEPGDVVLIGVAGYFGNRLVDXAGRYGADVRTISKPWGEVFSLEELRTAL- 155
Query: 132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191
               H    + +VH ET+TG    L  V +L  E+    L LVD V+S+  +   +D WG
Sbjct: 156 --ETHRPAILALVHAETSTGARQPLEGVGELCREF--GTLLLVDTVTSLGGVPIFLDAWG 211
Query: 192 IDVALTGSQKALSLPTGMGIVCASPKALE--ASKTAKSVRVFFDWKDYIKFYNLGTFWPY 249
           +D+A + SQK L    G      S +A+E    +  K    + D     K++     + +
Sbjct: 212 VDLAYSCSQKGLGCSPGASPFTXSSRAIEKLQRRRTKVANWYLDXNLLGKYWGSERVYHH 271
Query: 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVT 309
           T  I L Y LR AL LI +EGL N  +RH++  +     +E  GL    +K E+   T+T
Sbjct: 272 TAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEK-EYRLPTLT 330
Query: 310 AVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352
            V +P  ++   + RR    +N+ +G GL ++AGKV+R+G  G
Sbjct: 331 TVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLXG 373

>pdb|3ISL|A Chain A, Crystal Structure Of Ureidoglycine-Glyoxylate Aminotransferase (Pucg) From Bacillus Subtilis Length = 416

Iteration: 1
 Score =  148 bits (373), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 187/408 (45%), Gaps = 39/408 (9%)
Query: 12  LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
           +  PGPV +  +V+R M+        PA   +    +E ++++F+T +   + I  T   
Sbjct: 14  IMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRA 73
Query: 72  AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA 131
             E+ L + + P D ++  + G+F  L  +  +R   NV ++E +WG     + +  ++ 
Sbjct: 74  GIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIK 133
Query: 132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191
                  K + +VH ET+TG  + L  + +        ALF+VD V++I   + ++DEW 
Sbjct: 134 KVKP---KIVAMVHGETSTGRIHPLKAIGEAC--RTEDALFIVDAVATIGGCEVKVDEWK 188
Query: 192 IDVALTGSQKALSLPTGMGI---------VCASPKALEASKTAKSVRVFFDW-----KDY 237
           ID A+ G+QK LS+P+GM           V A+ K +E     ++ R           +Y
Sbjct: 189 IDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNY 248
Query: 238 IKFYNLGTFWP------YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA 291
                L  +W       +T +  +LY LR  + L+ EEGLE   ERHR    A    ++A
Sbjct: 249 FDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKA 308
Query: 292 WGLKNCTQKEEWFSD------TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKV 345
            GL+        F D       VT V +P  I+   +      ++ + +      +AGK+
Sbjct: 309 MGLR-------LFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKI 361
Query: 346 FRIGHLGH-LNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQN 392
           +RIG +G+   +  +L  LAG+E +L      ++ G  + AA    +N
Sbjct: 362 WRIGTMGYSCRKENVLFVLAGLEAVLLRHNAGIEAGKALQAALDVYEN 409

>pdb|2HUF|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate Aminotransferase Length = 393

Iteration: 1
 Score =  145 bits (365), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 164/348 (47%), Gaps = 13/348 (3%)
Query: 12  LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
           L  PGP + P +V+ AM+R    +  P    +   + E ++ +F+T +   F +  +G G
Sbjct: 22  LMGPGPSNAPQRVLDAMSRPILGHLHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHG 81
Query: 72  AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA 131
             E+ L N L  GD I+    G +     D   R   +V VV+S  G+   LD +   L 
Sbjct: 82  GMEATLCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDAL- 140
Query: 132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191
               H    + +   +++TGV   L  V  L   ++H  L +VD V+S+      MD W 
Sbjct: 141 --LIHKPSVLFLTQGDSSTGVLQGLEGVGALC--HQHNCLLIVDTVASLGGAPMFMDRWE 196
Query: 192 IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS-VRVFFDWK-----DYIKFYNLGT 245
           ID   TGSQ  L  P G+  V  S +A+E  K   + V+V++ W      DY   +    
Sbjct: 197 IDAMYTGSQXVLGAPPGITPVSFSHRAVERYKRRNTKVKVYY-WDMSLVGDYWGCFGRPR 255
Query: 246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS 305
            + +T S  LLYGLR A+ +  EEGL  +I RH    K     ++  G +     ++  S
Sbjct: 256 IYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLS 315
Query: 306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 353
            TVT + VP  ++  +  + A + Y + +  GL   AG+VFRIG +G 
Sbjct: 316 -TVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQ 362

>pdb|3ZRP|A Chain A, Crystal Structure And Substrate Specificity Of A Thermophilic Archaeal Serine : Pyruvate Aminotransferase From Sulfolobus Solfataricus Length = 384

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 189/385 (49%), Gaps = 23/385 (5%)
Query: 16  GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGTGAWE 74
           GP  I + V+ A   NN  + S          L+ ++ +   +    P +IP  GT A E
Sbjct: 9   GPTTIKEDVLVAGLENNVGFTSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME 68
Query: 75  SALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT 134
           S +T+ L P D+I+    G F   W    +R   NV V+    G+  K   +  ++    
Sbjct: 69  S-VTSLLKPNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSE 127
Query: 135 AHTIKAICIVHNETATGV----TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW 190
               K + + H ET+TGV     + ++K+RK ++      L +VDGVSS+ A + + +EW
Sbjct: 128 ---YKLVALTHVETSTGVREPVKDVINKIRKYVE------LIVVDGVSSVGAEEVKAEEW 178
Query: 191 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF----DWKDYIKFYNLGTF 246
            +DV LT SQKAL    G+G++  SPKAL    +  S+  ++    +W   ++    G  
Sbjct: 179 NVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKA 238
Query: 247 WPY-TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS 305
             + TP + ++  L  A  LI +EG+EN I+RH  +  A R  +EA GL+   ++ E +S
Sbjct: 239 AYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYS 298
Query: 306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAG 365
           +TVT VI+   +   + V        +    G++  A K FRIGH+G +     +  ++ 
Sbjct: 299 NTVTGVIL--KVADPQKVLAGTVNEGVEFAPGVHP-AFKYFRIGHMGWVTPNDAIIAISV 355
Query: 366 VEMILKDVGYPVKLGSGVAAASAYL 390
           +E  L+ +G P++ G GV A    L
Sbjct: 356 IERTLRKLGEPIRFGEGVKAVEEVL 380

>pdb|1J04|A Chain A, Structural Mechanism Of Enzyme Mistargeting In Hereditary Kidney Stone Disease In Vitro Length = 392

Iteration: 1
 Score =  137 bits (346), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 163/350 (46%), Gaps = 18/350 (5%)
Query: 12  LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
           L  PGP ++P +++ A         S  +  +   + E I+ +F+T +    +I  +G  
Sbjct: 25  LLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHC 84
Query: 72  AWESALTNTLSPGDRIISFLIGQFSLLW----IDQQQRLNFNVDVVESDWGEGAKLDVLA 127
           A E+AL N L PGD   SFL+G   + W    +D  +R+   V  +  D G    L  + 
Sbjct: 85  ALEAALVNVLEPGD---SFLVGANGI-WGQRAVDIGERIGARVHPMTKDPGGHYTLQEVE 140
Query: 128 SKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRM 187
             LA    H    + + H E++TGV   L   R+L   Y+   L LVD V+S+      M
Sbjct: 141 EGLAQ---HKPVLLFLTHGESSTGVLQPLDGFRELCHRYK--CLLLVDSVASLGGTPLYM 195
Query: 188 DEWGIDVALTGSQKALSLPTGMGIVCASPKALEA--SKTAKSVRVFFDWKDYIKFYNLGT 245
           D  GID+  +GSQ AL+ P G  ++  S KA +   S+  K    + D K    F+    
Sbjct: 196 DRQGIDILYSGSQXALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDD 255
Query: 246 ---FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEE 302
               + +T  +  LY LR +L LI E+GLEN   +HR         ++A GL+   +   
Sbjct: 256 QPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPA 315
Query: 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352
               TVT V VP+  +  +IV      +++ +  GL    GKV RIG LG
Sbjct: 316 LRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLG 365

>pdb|2CH1|A Chain A, Structure Of Anopheles Gambiae 3-Hydroxykynurenine Transaminase Length = 396

Iteration: 1
 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 170/355 (47%), Gaps = 22/355 (6%)
Query: 15  PGPVHIPDQVIRAM------NRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTT 68
           PGP +   +V+ AM      N + E +R+         + + ++ IF+T +     +  +
Sbjct: 24  PGPSNCSKRVLTAMTNTVLSNFHAELFRT------MDEVKDGLRYIFQTENRATMCVSGS 77
Query: 69  GTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLAS 128
                E+ L+N L  GDR++  + G ++   ++  +R   +V  +E        L+ LA 
Sbjct: 78  AHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLAR 137
Query: 129 KLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD 188
              A   H  K + + H ++++G+   L  V ++   ++H  L +VD V+S+C + F MD
Sbjct: 138 ---AIELHQPKCLFLTHGDSSSGLLQPLEGVGQIC--HQHDCLLIVDAVASLCGVPFYMD 192
Query: 189 EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK-----DYIKFYNL 243
           +W ID   TG+QK L  P G+  +  SPKAL+  +  ++    F W      +Y   Y+ 
Sbjct: 193 KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDE 252
Query: 244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEW 303
              + +T +  L++ LR AL  I EEGLEN I+R     +     +   GL    +    
Sbjct: 253 PKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRH 312
Query: 304 FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQ 358
              TVT +++P  ++  ++ + A   ++L +  GL    GK +R+G +G  + +Q
Sbjct: 313 RLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQ 367

>pdb|1H0C|A Chain A, The Crystal Structure Of Human Alanine:glyoxylate Aminotransferase Length = 392

Iteration: 1
 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 163/350 (46%), Gaps = 18/350 (5%)
Query: 12  LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
           L  PGP ++P +++ A         S  +  +   + E I+ +F+T +    +I  +G  
Sbjct: 25  LLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHC 84
Query: 72  AWESALTNTLSPGDRIISFLIGQFSLLW----IDQQQRLNFNVDVVESDWGEGAKLDVLA 127
           A E+AL N L PGD   SFL+G   + W    +D  +R+   V  +  D G    L  + 
Sbjct: 85  ALEAALVNVLEPGD---SFLVGANGI-WGQRAVDIGERIGARVHPMTKDPGGHYTLQEVE 140
Query: 128 SKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRM 187
             LA    H    + + H E++TGV   L    +L   Y+   L LVD V+S+      M
Sbjct: 141 EGLAQ---HKPVLLFLTHGESSTGVLQPLDGFGELCHRYK--CLLLVDSVASLGGTPLYM 195
Query: 188 DEWGIDVALTGSQKALSLPTGMGIVCASPKALEA--SKTAKSVRVFFDWKDYIKFYNLGT 245
           D  GID+  +GSQKAL+ P G  ++  S KA +   S+  K    + D K    F+    
Sbjct: 196 DRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDD 255
Query: 246 ---FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEE 302
               + +T  +  LY LR +L LI E+GLEN   +HR         ++A GL+   +   
Sbjct: 256 QPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPA 315
Query: 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352
               TVT V VP+  +  +IV      +++ +  GL    GKV RIG LG
Sbjct: 316 LRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLG 365

>pdb|3R9A|A Chain A, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 394

Iteration: 1
 Score =  134 bits (337), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 162/350 (46%), Gaps = 18/350 (5%)
Query: 12  LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
           L  PGP ++P +++ A         S  +  +   + E I+ +F+T +    +I  +G  
Sbjct: 27  LLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHC 86
Query: 72  AWESALTNTLSPGDRIISFLIGQFSLLW----IDQQQRLNFNVDVVESDWGEGAKLDVLA 127
           A E+AL N L PGD   SFL+G   + W    +D  +R+   V  +  D G    L  + 
Sbjct: 87  ALEAALVNVLEPGD---SFLVGANGI-WGQRAVDIGERIGARVHPMTKDPGGHYTLQEVE 142
Query: 128 SKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRM 187
             LA    H    + + H E++TGV   L    +L   Y+   L LVD V+S+      M
Sbjct: 143 EGLAQ---HKPVLLFLTHGESSTGVLQPLDGFGELCHRYK--CLLLVDSVASLGGTPLYM 197
Query: 188 DEWGIDVALTGSQKALSLPTGMGIVCASPKALEA--SKTAKSVRVFFDWKDYIKFYNLGT 245
           D  GID+  +GSQ AL+ P G  ++  S KA +   S+  K    + D K    F+    
Sbjct: 198 DRQGIDILYSGSQXALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDD 257
Query: 246 ---FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEE 302
               + +T  +  LY LR +L LI E+GLEN   +HR         ++A GL+   +   
Sbjct: 258 QPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPA 317
Query: 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352
               TVT V VP+  +  +IV      +++ +  GL    GKV RIG LG
Sbjct: 318 LRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLG 367

>pdb|3NNK|A Chain A, Biochemical And Structural Characterization Of A Ureidoglycine Aminotransferase In The Klebsiella Pneumoniae Uric Acid Catabolic Pathway Length = 411

Iteration: 1
 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 177/401 (44%), Gaps = 29/401 (7%)
Query: 7   PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP 66
           P    L  PGP++   +V+RAM+        PA+      ++   + +F+T +    L+ 
Sbjct: 11  PPSRLLMGPGPINADPRVLRAMSSQLIGQYDPAMTHYMNEVMALYRGVFRTENRWTMLVD 70
Query: 67  TTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVL 126
            T     E+ L + + PGD+++  + G+F  L  +  +R    V  +E  WGE     V 
Sbjct: 71  GTSRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWGE-----VF 125
Query: 127 ASKLAADTAHTIKA--ICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID 184
                 D    I+   +  V  +T+T +   L+++ ++    R+ ALF  D  +S+    
Sbjct: 126 TPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEIC--RRYDALFYTDATASLGGNP 183
Query: 185 FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV---------RVFFDWK 235
              D WG+D    G Q  L  P+G   +  S +  EA +  K V         R   +  
Sbjct: 184 LETDVWGLDAVSAGMQXCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEM 243
Query: 236 DYIKFYNLGTFWPY---------TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATR 286
            Y  +++LG    Y         T +   L+G R    LI +EGL+  I RH+  G A  
Sbjct: 244 IYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALV 303
Query: 287 LAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVF 346
             ++A GL+     +   ++ V  V++P  IN  +  +   + + + +G     + GKV+
Sbjct: 304 KGIQAMGLETFGDLKHKMNN-VLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVW 362
Query: 347 RIGHLGH-LNELQLLGCLAGVEMILKDVGYPVKLGSGVAAA 386
           RIG +G+   +  ++  L+ +E +L  + +P   G+ + AA
Sbjct: 363 RIGTMGYNARKDCVMTTLSALEAVLNYLKFPTTQGAAMQAA 403

>pdb|3KGX|A Chain A, Crystal Structure Of Putative Aminotransferase (Aah25799.1) From Mus Musculus At 1.80 A Resolution Length = 393

Iteration: 1
 Score =  129 bits (323), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 160/351 (45%), Gaps = 18/351 (5%)
Query: 12  LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
           L  PGP ++  +V+ A +     +    +  + + + + I+ +F+T +    ++  +G  
Sbjct: 26  LLGPGPSNLAPRVLAAGSLRMIGHMQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHC 85
Query: 72  AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA 131
           A E+AL N L PGD  ++   G + +   +   R+   V  +    GE   L  +   LA
Sbjct: 86  AMETALFNLLEPGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLA 145
Query: 132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191
               H    + +VH E++TGV   L    +L   Y+   L LVD V+S+  +   MD+ G
Sbjct: 146 Q---HKPVLLFLVHGESSTGVVQPLDGFGELCHRYQ--CLLLVDSVASLGGVPIYMDQQG 200
Query: 192 IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFW---- 247
           ID+  + SQK L+ P G+ ++  + KA     + K+  V F    Y     L   W    
Sbjct: 201 IDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSF----YTDITYLAKLWGCEG 256
Query: 248 -----PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEE 302
                 +T  +  LY LR +L LI E+GLEN   RHR         ++  GLK   +  E
Sbjct: 257 ETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPE 316
Query: 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 353
               T+T V VP+  N  +IV      +++ +  GL     +V RIG LG+
Sbjct: 317 IRLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGY 367

>pdb|2Z9U|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate Aminotransferase From Mesorhizobium Loti At 2.0 A Resolution Length = 392

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 176/384 (45%), Gaps = 14/384 (3%)
Query: 16  GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWES 75
           GPV+   +V+R + R       PA   L + +++  +K  +  S  P ++        E+
Sbjct: 16  GPVNAYPEVLRGLGRTVLYDYDPAFQLLYEKVVDKAQKAMRL-SNKPVILHGEPVLGLEA 74
Query: 76  ALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA 135
           A  + +SP D +++   G +   +    +R + ++  +E  + E      +A  L A   
Sbjct: 75  AAASLISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPE 134
Query: 136 HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVA 195
            T+ ++C  H++T +G  N +  +  L+    H A  +VD VSS   +    ++   D+ 
Sbjct: 135 ITVVSVC--HHDTPSGTINPIDAIGALVSA--HGAYLIVDAVSSFGGMKTHPEDCKADIY 190
Query: 196 LTGSQKALSLPTGMGIVCASPKA---LEASKTAK--SVRVFFDWKDYIKFYNLGTFWPYT 250
           +TG  K L  P G+ ++  S +A   ++A+  A   S+    DW++    ++    +P+T
Sbjct: 191 VTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWEN---AWSRDKPFPFT 247
Query: 251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA 310
           PS+  + GL  ALDL   EG E V  RH    KA R  V A GL      +   S T TA
Sbjct: 248 PSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMGLSVWAASDSIASPTTTA 307
Query: 311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNE-LQLLGCLAGVEMI 369
           V  P  ++   + + A  RY +    G  +  GK+ RIGH+G   + +  +  L  +   
Sbjct: 308 VRTPDGVDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGA 367
Query: 370 LKDVGYPVKLGSGVAAASAYLQNN 393
           +   G  + +G G+ AA A +  +
Sbjct: 368 MNAAGRKLAIGKGIEAALAVIDAD 391

>pdb|2BKW|A Chain A, Yeast Alanine:glyoxylate Aminotransferase Yfl030w Length = 385

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 169/358 (47%), Gaps = 23/358 (6%)
Query: 12  LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGT---PFLIPTT 68
           L +PGP+ +   V +A++  +  + SP   ++ + +L++ + +FK+ + +   PF++  +
Sbjct: 8   LLIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGS 67
Query: 69  GTGAWESALTNTL---SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES-DWGEGAKLD 124
           GT  W+   +N +   +P   ++    G FS  + D  +     VDVV     GE   L+
Sbjct: 68  GTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLE 127
Query: 125 VLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID 184
           ++  KL+ ++     A+ + H +T+T V ++L  + + + +      F+VD V SI   +
Sbjct: 128 LITEKLSQNS---YGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEE 184
Query: 185 FRMDEWGIDVALTGSQKALSLPTGMGIVCASPK----ALEASKTAKSVRVFFD----WKD 236
           F  DEWG+D ALT SQ A+  P G+ I   S +    AL  SK    V  +F     W  
Sbjct: 185 FEFDEWGVDFALTASQXAIGAPAGLSISLCSSRFXDYALNDSKNGH-VHGYFSSLRRWTP 243
Query: 237 YIKFYNLGT-FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK 295
             + Y  G   +  TP +QL+  L  AL  I EEGL    + HR      + ++   GL+
Sbjct: 244 IXENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREXSDWFKDSL-VNGLQ 302
Query: 296 NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAG-KVFRIGHLG 352
             T    + S+     +   ++     V    + + + +  G++K  G K  RIGH G
Sbjct: 303 -LTSVSRYPSNXSAHGLTAVYVADPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHXG 359

>pdb|2YRI|A Chain A, Crystal Structure Of Alanine-pyruvate Aminotransferase With 2- Methylserine Length = 353

Iteration: 1
 Score =  111 bits (277), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 156/347 (44%), Gaps = 22/347 (6%)
Query: 12  LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
           L  PGP  IP++V +A+ R    +  P V  + + + E +  +F    G   +    G+G
Sbjct: 3   LLTPGPTPIPERVQKALLRPMRGHLDPEVLRVNRAIQERLAALFDPGEGA-LVAALAGSG 61
Query: 72  A--WESALTNTLSPGDR--IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLA 127
           +   E+ L N     DR  ++  + G FS    +       + +V++   GE    + +A
Sbjct: 62  SLGMEAGLANL----DRGPVLVLVNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVA 117
Query: 128 SKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRM 187
             L        + + +VH ET+TGV N    +  L  E    ALF +D V+++  + F M
Sbjct: 118 RAL---KRRRYRMVALVHGETSTGVLNPAEAIGALAKEAG--ALFFLDAVTTLGMLPFSM 172
Query: 188 DEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV-FFDWKDYIKFYNLGTF 246
              G+D A TGSQK LS P G+  + AS   LEA K     R  + D     + +  G +
Sbjct: 173 RAMGVDYAFTGSQKCLSAPPGLAPIAAS---LEARKAFTGKRGWYLDLARVAEHWERGGY 229
Query: 247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD 306
              TP + L Y L  ALDL+ EEG+     R R +       ++A G +   +       
Sbjct: 230 HHTTP-VLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYPKASPL--P 286
Query: 307 TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 353
           TV  V  P  +++  +V RA     +++  G+    G+V R+G +G 
Sbjct: 287 TVLVVRPPEGVDADRLV-RALYAEGVAVAGGIGPTRGQVLRLGLMGE 332

>pdb|1IUG|A Chain A, The Crystal Structure Of Aspartate Aminotransferase Which Belongs To Subgroup Iv From Thermus Thermophilus Length = 352

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 170/375 (45%), Gaps = 43/375 (11%)
Query: 12  LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG 71
           L  PGPV +  + + A+ R    +R+ A   +       +++ F+T  G   ++  +GT 
Sbjct: 4   LLTPGPVRLHPKALEALARPQLHHRTEAAREVFLKARGLLREAFRT-EGEVLILTGSGTL 62
Query: 72  AWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA 131
           A E+ + N  +PG+R++  + G+FS  + +        V+ ++  +G+  + + +A +  
Sbjct: 63  AMEALVKNLFAPGERVLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAKEGY 122
Query: 132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG 191
           A        + +VH+ET+TG   +L  + +   E     L   D V+S+   +  ++  G
Sbjct: 123 A-------GLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMG 175
Query: 192 IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG-TFWPYT 250
           +D A +GSQ  L  P G+G V  SP+ALE  K       + D    +K    G + W  T
Sbjct: 176 VDAAASGSQXGLMCPPGLGFVALSPRALERLKPRG---YYLDLARELKAQKEGESAW--T 230
Query: 251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW------------GLKNCT 298
           P+I L+  + A L+ +        +E H        LA++AW            GL+   
Sbjct: 231 PAINLVLAVAAVLEEVLPR-----LEEH--------LALKAWQNALLYGVGEEGGLRPVP 277
Query: 299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQ 358
           ++   FS  V A  +P  +  +  V+ A+ +    +  G   + GKVFR+  +G  +  +
Sbjct: 278 KR---FSPAVAAFYLPEGVPYAR-VKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYE 333
Query: 359 LLGCLAGVEMILKDV 373
            LG       +L+++
Sbjct: 334 ALGVAGMFREVLEEI 348

>pdb|3F0H|A Chain A, Crystal Structure Of Aminotransferase (Rer070207000802) From Eubacterium Rectale At 1.70 A Resolution Length = 376

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 151/352 (42%), Gaps = 29/352 (8%)
Query: 13  FVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIK---KIFKTTSGTPFLIPT-T 68
           F  GPV   ++V RA+      Y        + T LE+ K   +  K   G+  +  T +
Sbjct: 23  FTVGPVXSSEEV-RAIGAEQVPYFR--TTEFSSTXLENEKFXLEYAKAPEGSKAVFXTCS 79
Query: 69  GTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLAS 128
            TG+ E+ + N  +  D+++    G F   ++  Q      +  V      G KL     
Sbjct: 80  STGSXEAVVXNCFTKKDKVLVIDGGSFGHRFV--QLCEIHEIPYVALKLEHGKKL--TKE 135
Query: 129 KLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMD 188
           KL          + +  +ET+T V  +   + +     ++   F+ D VS+  A  F  +
Sbjct: 136 KLYEYDNQNFTGLLVNVDETSTAVLYDTXXIGEFCK--KNNXFFVCDCVSAFLADPFNXN 193
Query: 189 EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP 248
           E G DV +TGSQ  L+ P G+ ++  +P+ +E  + +K    +FD KD +K    G   P
Sbjct: 194 ECGADVXITGSQXVLACPPGISVIVLAPRGVERVEKSKVRTXYFDLKDALKNQERGQ-TP 252
Query: 249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK------EE 302
           +TP++ +L  +   L  I + G  +         +  R+A +A   +   +        E
Sbjct: 253 FTPAVGILLQINERLKEIKKHGGAD--------AEVARIASQAADFRAKIKDLPFELVSE 304
Query: 303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHL 354
             ++ VT+V  P+  N+ +I  +    Y + +     +    +FR+GH+G L
Sbjct: 305 SPANGVTSVH-PTTANAYDIFLKLKDEYGIWICPNGGEXKDTIFRVGHIGAL 355

>pdb|1M32|A Chain A, Crystal Structure Of 2-Aminoethylphosphonate Transaminase Length = 366

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 146/369 (39%), Gaps = 31/369 (8%)
Query: 12  LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGT 70
           L  PGP+     V  A   ++  +       + + + + +  +   + G T  L+  +G+
Sbjct: 7   LLTPGPLTTSRTVKEAXLFDSCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGS 66
Query: 71  GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKL 130
            A E+ L + L P D+++    G +    ++              D GE A+ DV A   
Sbjct: 67  YAVEAVLGSALGPQDKVLIVSNGAYGARXVEXAGLXGIAHHAY--DCGEVARPDVQAIDA 124
Query: 131 AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW 190
             +   TI  I  VH+ET TG  N + +V  L   +R+   ++VD  SS   I   +   
Sbjct: 125 ILNADPTISHIAXVHSETTTGXLNPIDEVGAL--AHRYGKTYIVDAXSSFGGIPXDIAAL 182
Query: 191 GIDVALTGSQKALSLPTGMGIVCASPKALEASK---TAKSVRVFFDWKDYIKFYNLGTFW 247
            ID  ++ + K +    G   V A  + L A K    + S+ ++  W+      N G  W
Sbjct: 183 HIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWR--CXEDNHGK-W 239
Query: 248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAV---EAWGLKNCTQKEEWF 304
            +T     +     AL  + +EG   V  RH+R  +  R  V    A G  N    +E  
Sbjct: 240 RFTSPTHTVLAFAQALKELAKEG--GVAARHQRYQQNQRSLVAGXRALGF-NTLLDDELH 296
Query: 305 SDTVTAVIVPS--HINSSEIVRRAWQRYNLSLGLGLNKVAGKV-----FRIGHLGHLNEL 357
           S  +TA   P       SE  RR  ++       G     GKV     FRIG++G +   
Sbjct: 297 SPIITAFYSPEDPQYRFSEFYRRLKEQ-------GFVIYPGKVSQSDCFRIGNIGEVYAA 349
Query: 358 QLLGCLAGV 366
            +   L  +
Sbjct: 350 DITALLTAI 358

>pdb|3FFR|A Chain A, Crystal Structure Of A Phosphoserine Aminotransferase Serc (chu_0995) From Cytophaga Hutchinsonii Atcc 33406 At 1.75 A Resolution Length = 362

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 91/220 (41%), Gaps = 23/220 (10%)
Query: 13  FVPGPVH----IPDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP 66
           F PGP      +    I A++       +RS     + KT  +++K + +  S    L  
Sbjct: 8   FTPGPSELYPTVRQHXITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFL 67
Query: 67  TTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG---AKL 123
            + T  WE  + N +    +    + G FS  + +    L       E+ +G+G   A +
Sbjct: 68  ASATEIWERIIQNCVE--KKSFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFYPADI 125
Query: 124 DVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI 183
            V A           + IC+ HNET++GV+  +  +    D+ +  AL  VD VSS+   
Sbjct: 126 TVPADA---------EIICLTHNETSSGVSXPVEDINTFRDKNKD-ALIFVDAVSSLPYP 175
Query: 184 DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK 223
            F  D   ID      Q    LP G+G+   + + +E SK
Sbjct: 176 KF--DWTKIDSVFFSVQXCFGLPAGLGVWILNDRVIEKSK 213

>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE Desulfurase From Synechocystis Pcc 6803 Length = 420

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 84/208 (40%), Gaps = 26/208 (12%)
Query: 79  NTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAH 136
           N L  GD II+ ++   S L  W     +    +  V+ D  E   L+   + L+  T  
Sbjct: 113 NNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKT-- 170
Query: 137 TIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVA- 195
             K + +VH     G  N   ++ +L   ++  A  LVD   S  A  + +D   ID   
Sbjct: 171 --KLVTVVHISNTLGCVNPAEEIAQL--AHQAGAKVLVDACQS--APHYPLDVQLIDCDW 224
Query: 196 LTGSQKALSLPTGMGIVCASPKALEA-----SKTAKSVRVFFDWKDYIKFYNLGT----F 246
           L  S   +  PTG+G +    + LEA             VFFD       +  G     F
Sbjct: 225 LVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFD------HFTTGELPHKF 278
Query: 247 WPYTPSIQLLYGLRAALDLIFEEGLENV 274
              TP+I     L AA+D + + G+EN+
Sbjct: 279 EAGTPAIAEAIALGAAVDYLTDLGMENI 306

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	401
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	0.0
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	1e-177
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	1e-175
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	1e-173
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	1e-172
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	1e-172
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	1e-169
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	1e-168
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	1e-165
1iug_A	352	Putative aspartate aminotransferase; wild type, py	1e-159
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	1e-156
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	1e-153
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	1e-153
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	1e-134
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	1e-130
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	8e-78
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	2e-11
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	4e-08
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	1e-07

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} Length = 411

 Score =  507 bits (1309), Expect = 0.0
 Identities = 94/408 (23%), Positives = 178/408 (43%), Gaps = 25/408 (6%)

Query: 5   YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFL 64
             P    L  PGP++   +V+RAM+        PA+      ++   + +F+T +    L
Sbjct: 9   LNPPSRLLMGPGPINADPRVLRAMSSQLIGQYDPAMTHYMNEVMALYRGVFRTENRWTML 68

Query: 65  IPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLD 124
           +  T     E+ L + + PGD+++  + G+F  L  +  +R    V  +E  WGE    D
Sbjct: 69  VDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPD 128

Query: 125 VLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID 184
            +   +        + +  V  +T+T +   L+++ ++    R+ ALF  D  +S+    
Sbjct: 129 QVEDAVK---RIRPRLLLTVQGDTSTTMLQPLAELGEICR--RYDALFYTDATASLGGNP 183

Query: 185 FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV-------------- 230
              D WG+D    G QK L  P+G   +  S +  EA +  K V                
Sbjct: 184 LETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEM 243

Query: 231 ----FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATR 286
               +FD    + ++       +T +   L+G R    LI +EGL+  I RH+  G A  
Sbjct: 244 IYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALV 303

Query: 287 LAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVF 346
             ++A GL+      +   + V  V++P  IN  +  +   + + + +G     + GKV+
Sbjct: 304 KGIQAMGLETFG-DLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVW 362

Query: 347 RIGHLGH-LNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNN 393
           RIG +G+   +  ++  L+ +E +L  + +P   G+ + AA  + ++ 
Sbjct: 363 RIGTMGYNARKDCVMTTLSALEAVLNYLKFPTTQGAAMQAAWDHYRSE 410

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Length = 392

 Score =  499 bits (1286), Expect = e-177
 Identities = 96/396 (24%), Positives = 167/396 (42%), Gaps = 8/396 (2%)

Query: 1   MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
           M Y            GPV+   +V+R + R       PA   L + +++  +K  + +  
Sbjct: 1   MRYPEHADPVITLTAGPVNAYPEVLRGLGRTVLYDYDPAFQLLYEKVVDKAQKAMRLS-N 59

Query: 61  TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
            P ++        E+A  + +SP D +++   G +   +    +R + ++  +E  + E 
Sbjct: 60  KPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEA 119

Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
                +A  L A     I  + + H++T +G  N +  +  L+    H A  +VD VSS 
Sbjct: 120 IDPQAVADMLKAH--PEITVVSVCHHDTPSGTINPIDAIGALVSA--HGAYLIVDAVSSF 175

Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV--RVFFDWKDYI 238
             +    ++   D+ +TG  K L  P G+ ++  S +A    K              D+ 
Sbjct: 176 GGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWE 235

Query: 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCT 298
             ++    +P+TPS+  + GL  ALDL   EG E V  RH    KA R  V A GL    
Sbjct: 236 NAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMGLSVWA 295

Query: 299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHL-NEL 357
             +   S T TAV  P  ++   + + A  RY +    G  +  GK+ RIGH+G     +
Sbjct: 296 ASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPI 355

Query: 358 QLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNN 393
             +  L  +   +   G  + +G G+ AA A +  +
Sbjct: 356 YAIAALTALGGAMNAAGRKLAIGKGIEAALAVIDAD 391

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} Length = 416

 Score =  495 bits (1276), Expect = e-175
 Identities = 101/410 (24%), Positives = 184/410 (44%), Gaps = 27/410 (6%)

Query: 5   YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFL 64
                  +  PGPV +  +V+R M+        PA   +    +E ++++F+T +   + 
Sbjct: 7   LCTPLRTIMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYP 66

Query: 65  IPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLD 124
           I  T     E+ L + + P D ++  + G+F  L  +  +R   NV ++E +WG     +
Sbjct: 67  IDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPE 126

Query: 125 VLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID 184
            +  ++        K + +VH ET+TG  + L  + +        ALF+VD V++I   +
Sbjct: 127 DIIREIK---KVKPKIVAMVHGETSTGRIHPLKAIGEACR--TEDALFIVDAVATIGGCE 181

Query: 185 FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV---------------- 228
            ++DEW ID A+ G+QK LS+P+GM  +  + +  +     K V                
Sbjct: 182 VKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGN 241

Query: 229 ----RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKA 284
                 +FD      +++      +T +  +LY LR  + L+ EEGLE   ERHR    A
Sbjct: 242 RPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAA 301

Query: 285 TRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGK 344
               ++A GL+     +      VT V +P  I+   +      ++ + +      +AGK
Sbjct: 302 LAAGIKAMGLRLFG-DDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGK 360

Query: 345 VFRIGHLGH-LNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNN 393
           ++RIG +G+   +  +L  LAG+E +L      ++ G  + AA    +N 
Sbjct: 361 IWRIGTMGYSCRKENVLFVLAGLEAVLLRHNAGIEAGKALQAALDVYENA 410

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* Length = 393

 Score =  487 bits (1255), Expect = e-173
 Identities = 106/383 (27%), Positives = 168/383 (43%), Gaps = 12/383 (3%)

Query: 7   PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP 66
                L  PGP + P +V+ AM+R    +  P    +   + E ++ +F+T +   F + 
Sbjct: 17  TPNKLLMGPGPSNAPQRVLDAMSRPILGHLHPETLKIMDDIKEGVRYLFQTNNIATFCLS 76

Query: 67  TTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVL 126
            +G G  E+ L N L  GD I+    G +     D   R   +V VV+S  G+   LD +
Sbjct: 77  ASGHGGMEATLCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEI 136

Query: 127 ASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR 186
              L     H    + +   +++TGV   L  V  L    +H  L +VD V+S+      
Sbjct: 137 RDALL---IHKPSVLFLTQGDSSTGVLQGLEGVGALCH--QHNCLLIVDTVASLGGAPMF 191

Query: 187 MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW-----KDYIKFY 241
           MD W ID   TGSQK L  P G+  V  S +A+E  K   +    + W      DY   +
Sbjct: 192 MDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCF 251

Query: 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKE 301
                + +T S  LLYGLR A+ +  EEGL  +I RH    K     ++  G +      
Sbjct: 252 GRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYA-DP 310

Query: 302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH-LNELQLL 360
           +    TVT + VP  ++  +  + A + Y + +  GL   AG+VFRIG +G      ++ 
Sbjct: 311 KDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVD 370

Query: 361 GCLAGVEMILKDVGYPVKLGSGV 383
             L   +  +  V   V++   +
Sbjct: 371 RVLQVFQEAVAAVKPDVQVKGKM 393

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* Length = 384

 Score =  485 bits (1251), Expect = e-172
 Identities = 113/387 (29%), Positives = 186/387 (48%), Gaps = 15/387 (3%)

Query: 12  LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGT 70
           L   GP  I + V+ A   NN  + S          L+ ++ +   + +  P +IP  GT
Sbjct: 5   LLHVGPTTIKEDVLVAGLENNVGFTSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGT 64

Query: 71  GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKL 130
            A E ++T+ L P D+I+    G F   W    +R   NV V+    G+  K   +  ++
Sbjct: 65  SAME-SVTSLLKPNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEV 123

Query: 131 AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW 190
                   K + + H ET+TGV   +  V   +   ++  L +VDGVSS+ A + + +EW
Sbjct: 124 RK---SEYKLVALTHVETSTGVREPVKDVINKIR--KYVELIVVDGVSSVGAEEVKAEEW 178

Query: 191 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF----DWKDYIKFYNLGTF 246
            +DV LT SQKAL    G+G++  SPKAL    +  S+  ++    +W   ++    G  
Sbjct: 179 NVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKA 238

Query: 247 -WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS 305
            +  TP + ++  L  A  LI +EG+EN I+RH  +  A R  +EA GL+   ++ E +S
Sbjct: 239 AYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYS 298

Query: 306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAG 365
           +TVT VI+         V        +    G++  A K FRIGH+G +     +  ++ 
Sbjct: 299 NTVTGVILKVADPQK--VLAGTVNEGVEFAPGVHP-AFKYFRIGHMGWVTPNDAIIAISV 355

Query: 366 VEMILKDVGYPVKLGSGVAAASAYLQN 392
           +E  L+ +G P++ G GV A    L +
Sbjct: 356 IERTLRKLGEPIRFGEGVKAVEEVLFS 382

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* Length = 396

 Score =  484 bits (1249), Expect = e-172
 Identities = 94/385 (24%), Positives = 172/385 (44%), Gaps = 11/385 (2%)

Query: 7   PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP 66
             +  +  PGP +   +V+ AM           +      + + ++ IF+T +     + 
Sbjct: 16  IPEKIMMGPGPSNCSKRVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVS 75

Query: 67  TTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVL 126
            +     E+ L+N L  GDR++  + G ++   ++  +R   +V  +E        L+ L
Sbjct: 76  GSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETL 135

Query: 127 ASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR 186
           A    A   H  K + + H ++++G+   L  V ++    +H  L +VD V+S+C + F 
Sbjct: 136 A---RAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICH--QHDCLLIVDAVASLCGVPFY 190

Query: 187 MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW-----KDYIKFY 241
           MD+W ID   TG+QK L  P G+  +  SPKAL+  +  ++    F W      +Y   Y
Sbjct: 191 MDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCY 250

Query: 242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKE 301
           +    + +T +  L++ LR AL  I EEGLEN I+R     +     +   GL    +  
Sbjct: 251 DEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDP 310

Query: 302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQ-LL 360
                TVT +++P  ++  ++ + A   ++L +  GL    GK +R+G +G  + +Q + 
Sbjct: 311 RHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQ 370

Query: 361 GCLAGVEMILKDVGYPVKLGSGVAA 385
             L G +  LK              
Sbjct: 371 FYLYGFKESLKATHPDYIFEESNGF 395

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} Length = 386

 Score =  479 bits (1234), Expect = e-169
 Identities = 103/370 (27%), Positives = 176/370 (47%), Gaps = 7/370 (1%)

Query: 7   PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP 66
             K  LF  GPV    +V+  M      +RS     +    +E +++  +   G   L+P
Sbjct: 18  KPKYKLFTAGPVACFPEVLEIMKVQMFSHRSKEYRKVHMDTVERLREFLEVEKGEVLLVP 77

Query: 67  TTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVL 126
           ++GTG  E+++ N +S G +++  +IG F   + +  +       V+E + G+  K + L
Sbjct: 78  SSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDL 137

Query: 127 ASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR 186
              L  +    ++A+ I +NET+TGV N L ++ K+     H  L  VD VS++   D +
Sbjct: 138 DDALRKN--PDVEAVTITYNETSTGVLNPLPELAKVAK--EHDKLVFVDAVSAMGGADIK 193

Query: 187 MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTF 246
            D+WG+DV  + SQKA  +P G+ I   S + LE ++       +FD   Y+K+      
Sbjct: 194 FDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKES 253

Query: 247 WPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS 305
            P TP +  ++G+  AL +I + G  E  +E + +  K  R  V   GL     +    S
Sbjct: 254 TPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILA-EPGHES 312

Query: 306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAG 365
            T+TAV+ P  I   E V  A ++    L  G   V  K FRIGH+G++    +   L  
Sbjct: 313 PTITAVLTPPGIKGDE-VYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDN 371

Query: 366 VEMILKDVGY 375
           +  ++ ++  
Sbjct: 372 LREVINELKK 381

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* Length = 393

 Score =  475 bits (1226), Expect = e-168
 Identities = 97/381 (25%), Positives = 166/381 (43%), Gaps = 11/381 (2%)

Query: 1   MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
           +    +     L  PGP ++  +V+ A +     +    +  + + + + I+ +F+T + 
Sbjct: 15  LSKPLSVPTRLLLGPGPSNLAPRVLAAGSLRMIGHMQKEMLQIMEEIKQGIQYVFQTRNP 74

Query: 61  TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
              ++  +G  A E+AL N L PGD  ++   G + +   +   R+   V  +    GE 
Sbjct: 75  LTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEH 134

Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
             L  +   LA    H    + +VH E++TGV   L    +L    R+  L LVD V+S+
Sbjct: 135 YTLQEVEEGLAQ---HKPVLLFLVHGESSTGVVQPLDGFGELCH--RYQCLLLVDSVASL 189

Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV--FFDWKDYI 238
             +   MD+ GID+  + SQK L+ P G+ ++  + KA     + K+  V  + D     
Sbjct: 190 GGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLA 249

Query: 239 KFY---NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK 295
           K +          +T  +  LY LR +L LI E+GLEN   RHR         ++  GLK
Sbjct: 250 KLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLK 309

Query: 296 NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH-L 354
              +  E    T+T V VP+  N  +IV      +++ +  GL     +V RIG LG+  
Sbjct: 310 FFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNA 369

Query: 355 NELQLLGCLAGVEMILKDVGY 375
               +      +   L+    
Sbjct: 370 TTENVDRVAEALREALQHCPK 390

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 Length = 393

 Score =  469 bits (1208), Expect = e-165
 Identities = 104/374 (27%), Positives = 182/374 (48%), Gaps = 10/374 (2%)

Query: 1   MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
           ++ +  P +  L  PGP +    V++AMN +   +  PA  AL   +   ++ +++T + 
Sbjct: 27  LEPLEVPSR-LLLGPGPSNAHPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQTENP 85

Query: 61  TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
               +  TGT A E+ + N + PGD ++  + G F    +D   R   +V  +   WGE 
Sbjct: 86  LTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEV 145

Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
             L+ L + L     H    + +VH ET+TG    L  V +L        L LVD V+S+
Sbjct: 146 FSLEELRTALE---THRPAILALVHAETSTGARQPLEGVGELCR--EFGTLLLVDTVTSL 200

Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV--FFDWKDYI 238
             +   +D WG+D+A + SQK L    G      S +A+E  +  ++     + D     
Sbjct: 201 GGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLG 260

Query: 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCT 298
           K++     + +T  I L Y LR AL LI +EGL N  +RH++  +     +E  GL    
Sbjct: 261 KYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHV 320

Query: 299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQ 358
            ++E+   T+T V +P  ++   + RR    +N+ +G GL ++AGKV+R+G +G  +  +
Sbjct: 321 -EKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKE 379

Query: 359 -LLGCLAGVEMILK 371
            +   +  +E +L+
Sbjct: 380 SVDQLIPALEQVLR 393

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 Length = 352

 Score =  450 bits (1160), Expect = e-159
 Identities = 86/364 (23%), Positives = 162/364 (44%), Gaps = 17/364 (4%)

Query: 10  NHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTG 69
           + L  PGPV +  + + A+ R    +R+ A   +       +++ F+T  G   ++  +G
Sbjct: 2   DWLLTPGPVRLHPKALEALARPQLHHRTEAAREVFLKARGLLREAFRTE-GEVLILTGSG 60

Query: 70  TGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASK 129
           T A E+ + N  +PG+R++  + G+FS  + +        V+ ++  +G+  + + +A  
Sbjct: 61  TLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVA-- 118

Query: 130 LAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDE 189
                      + +VH+ET+TG   +L  + +   E     L   D V+S+   +  ++ 
Sbjct: 119 -----KEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEA 173

Query: 190 WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY 249
            G+D A +GSQK L  P G+G V  SP+ALE  K       + D    +K    G    +
Sbjct: 174 MGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPR---GYYLDLARELKAQKEGES-AW 229

Query: 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVT 309
           TP+I L+  + A L+ +     E  +              E  GL+      + FS  V 
Sbjct: 230 TPAINLVLAVAAVLEEVLPRL-EEHLALKAWQNALLYGVGEEGGLRPV---PKRFSPAVA 285

Query: 310 AVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMI 369
           A  +P  +  +  V+ A+ +    +  G   + GKVFR+  +G  +  + LG       +
Sbjct: 286 AFYLPEGVPYAR-VKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREV 344

Query: 370 LKDV 373
           L+++
Sbjct: 345 LEEI 348

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Length = 385

 Score =  445 bits (1148), Expect = e-156
 Identities = 97/388 (25%), Positives = 181/388 (46%), Gaps = 29/388 (7%)

Query: 6   APGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGT---P 62
               + L +PGP+ +   V +A++  +  + SP   ++ + +L++ + +FK+ + +   P
Sbjct: 2   TKSVDTLLIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQP 61

Query: 63  FLIPTTGTGAWESALTNTL---SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES-DWG 118
           F++  +GT  W+   +N +   +P   ++    G FS  + D  +     VDVV     G
Sbjct: 62  FVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIG 121

Query: 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178
           E   L+++  KL+    ++  A+ + H +T+T V ++L  + + + +      F+VD V 
Sbjct: 122 ESVPLELITEKLSQ---NSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVC 178

Query: 179 SICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE----ASKTAKSVRVFFD- 233
           SI   +F  DEWG+D ALT SQKA+  P G+ I   S + ++     SK       F   
Sbjct: 179 SIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSL 238

Query: 234 --WKDYIKFYNLGT-FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAV- 289
             W   ++ Y  G   +  TP +QL+  L  AL  I EEGL    + HR +    + ++ 
Sbjct: 239 RRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLV 298

Query: 290 EAWGLKNCTQK-EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK-VAGKVFR 347
               L + ++      +  +TAV V    +    V    + + + +  G++K +  K  R
Sbjct: 299 NGLQLTSVSRYPSNMSAHGLTAVYVADPPD----VIAFLKSHGVVIAGGIHKDIGPKYIR 354

Query: 348 IGHLGHL----NELQLLGCLAGVEMILK 371
           IGH+G      N   +  C   +++ L+
Sbjct: 355 IGHMGVTACNKNLPYMKNCFDLIKLALQ 382

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} Length = 376

 Score =  437 bits (1127), Expect = e-153
 Identities = 75/373 (20%), Positives = 155/373 (41%), Gaps = 14/373 (3%)

Query: 1   MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
            + +Y       F  GPV   ++V          +R+    +      + + +  K   G
Sbjct: 12  HENLYFQ-GMLNFTVGPVMSSEEVRAIGAEQVPYFRTTEFSSTMLENEKFMLEYAKAPEG 70

Query: 61  -TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE 119
                +  + TG+ E+ + N  +  D+++    G F   ++   +        ++ + G+
Sbjct: 71  SKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLEHGK 130

Query: 120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSS 179
               +    KL          + +  +ET+T V  +   + +   +  +   F+ D VS+
Sbjct: 131 KLTKE----KLYEYDNQNFTGLLVNVDETSTAVLYDTMMIGEFCKK--NNMFFVCDCVSA 184

Query: 180 ICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIK 239
             A  F M+E G DV +TGSQK L+ P G+ ++  +P+ +E  + +K   ++FD KD +K
Sbjct: 185 FLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALK 244

Query: 240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCT 298
               G   P+TP++ +L  +   L  I +  G +  + R        R  ++    +   
Sbjct: 245 NQERGQ-TPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELV- 302

Query: 299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQ 358
              E  ++ VT+V  P+  N+ +I  +    Y + +     ++   +FR+GH+G L    
Sbjct: 303 --SESPANGVTSV-HPTTANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHED 359

Query: 359 LLGCLAGVEMILK 371
               +   + + K
Sbjct: 360 NTTLVNAFKDLQK 372

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* Length = 353

 Score =  435 bits (1122), Expect = e-153
 Identities = 90/363 (24%), Positives = 156/363 (42%), Gaps = 15/363 (4%)

Query: 12  LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTP-FLIPTTGT 70
           L  PGP  IP++V +A+ R    +  P V  + + + E +  +F    G     +  +G+
Sbjct: 3   LLTPGPTPIPERVQKALLRPMRGHLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGS 62

Query: 71  GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKL 130
              E+ L N       ++  + G FS    +       + +V++   GE    + +A  L
Sbjct: 63  LGMEAGLANL--DRGPVLVLVNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARAL 120

Query: 131 AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW 190
                   + + +VH ET+TGV N    +  L  E    ALF +D V+++  + F M   
Sbjct: 121 KR---RRYRMVALVHGETSTGVLNPAEAIGALAKE--AGALFFLDAVTTLGMLPFSMRAM 175

Query: 191 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250
           G+D A TGSQK LS P G+  + AS +A +A    +    + D     + +  G +  +T
Sbjct: 176 GVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRG--WYLDLARVAEHWERGGY-HHT 232

Query: 251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA 310
             + L Y L  ALDL+ EEG+     R R +       ++A G +     +     TV  
Sbjct: 233 TPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYP--KASPLPTVLV 290

Query: 311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHL-NELQLLGCLAGVEMI 369
           V  P  +++   + RA     +++  G+    G+V R+G +G           L  ++  
Sbjct: 291 VRPPEGVDADR-LVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRA 349

Query: 370 LKD 372
           L  
Sbjct: 350 LAL 352

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 Length = 366

 Score =  388 bits (998), Expect = e-134
 Identities = 70/369 (18%), Positives = 141/369 (38%), Gaps = 11/369 (2%)

Query: 7   PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLI 65
                L  PGP+     V  AM  ++  +       + + + + +  +   + G T  L+
Sbjct: 2   SRNYLLLTPGPLTTSRTVKEAMLFDSCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLL 61

Query: 66  PTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDV 125
             +G+ A E+ L + L P D+++    G +    ++    +       +        +  
Sbjct: 62  QGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQA 121

Query: 126 LASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF 185
           + + L AD   TI  I +VH+ET TG+ N + +V  L    R+   ++VD +SS   I  
Sbjct: 122 IDAILNAD--PTISHIAMVHSETTTGMLNPIDEVGALAH--RYGKTYIVDAMSSFGGIPM 177

Query: 186 RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGT 245
            +    ID  ++ + K +    G   V A  + L A K          +  +    +   
Sbjct: 178 DIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHG 237

Query: 246 FWPYTPSIQLLYGLRAALDLIFE-EGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWF 304
            W +T     +     AL  + +  G+    +R+++  ++    + A G       +E  
Sbjct: 238 KWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLL-DDELH 296

Query: 305 SDTVTAVIVPSHINSS--EIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGC 362
           S  +TA   P        E  RR  ++  +     +++     FRIG++G +    +   
Sbjct: 297 SPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQ--SDCFRIGNIGEVYAADITAL 354

Query: 363 LAGVEMILK 371
           L  +   + 
Sbjct: 355 LTAIRTAMY 363

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} Length = 379

 Score =  378 bits (973), Expect = e-130
 Identities = 73/383 (19%), Positives = 138/383 (36%), Gaps = 30/383 (7%)

Query: 15  PGPVHIPDQVI----RAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGT 70
                I    +            ++ S A   +   LL ++K ++        +IP +GT
Sbjct: 4   ALRQDIDPNGLLEYSVVYTDRALNHMSKAFQEVMNDLLSNLKTVYNAE--AAVIIPGSGT 61

Query: 71  GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNF--NVDVVESDWGEGAKLDV--- 125
              E A+   L+  +  +    G FS  W    ++  F  +  V+ ++  E  +      
Sbjct: 62  YGME-AVARQLTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFA 120

Query: 126 ---LASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR-HPALFLVDGVSSIC 181
              + + +A         +   H ET++G+  +   ++ L +       L ++D ++S C
Sbjct: 121 PVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIASGC 180

Query: 182 AIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFY 241
            +   M E GIDV ++  QK  S     G+V  S  A++  ++ +S     D K ++   
Sbjct: 181 -VWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIM 239

Query: 242 ----NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNC 297
               N G  +  T     L   R A+    E G + + +    LG   R  +   G+++ 
Sbjct: 240 RAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESV 299

Query: 298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAG-----KVFRIGHLG 352
              E + +  V                 A+    L +  G+    G     K FR+G  G
Sbjct: 300 A-AEGFEAPGVVVSYTE---RDDMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFG 355

Query: 353 HLNELQLLGCLAGVEMILKDVGY 375
                 + G +   E  L +V  
Sbjct: 356 LDKLTDIDGTVERFEKALDEVLA 378

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} Length = 362

 Score =  243 bits (623), Expect = 8e-78
 Identities = 67/355 (18%), Positives = 135/355 (38%), Gaps = 26/355 (7%)

Query: 9   KNHLFVPGPVHIPDQVIRAMNRNNEDY------RSPAVPALTKTLLEDIKKIFKTTSGTP 62
               F PGP  +   V + M    ++       RS     + KT  +++K + +  S   
Sbjct: 4   NKIYFTPGPSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYE 63

Query: 63  FLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAK 122
            L   + T  WE  + N +    +    + G FS  + +    L       E+ +G+G  
Sbjct: 64  VLFLASATEIWERIIQNCVE--KKSFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFY 121

Query: 123 LDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICA 182
              +     A+       IC+ HNET++GV+  +  +    D+    AL  VD VSS+  
Sbjct: 122 PADITVPADAE------IICLTHNETSSGVSMPVEDINTFRDKN-KDALIFVDAVSSLPY 174

Query: 183 IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK----TAKSVRVFFDWKDYI 238
                D   ID      QK   LP G+G+   + + +E SK      KS+  +      +
Sbjct: 175 PK--FDWTKIDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSML 232

Query: 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGL-KNC 297
           +   +    P TP+   ++ L      + +   + + ++           +E+  +    
Sbjct: 233 EKARVNQT-PETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFG 291

Query: 298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 352
            +  +    ++T ++  + +   EI  +  + +++++G G         RI +  
Sbjct: 292 VEDAK--LRSMTTIVANTTMLPGEI-NKILEPFDMAVGAGYGSKKETQIRIANFP 343

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 Length = 416

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 17/186 (9%)

Query: 102 QQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRK 161
               L     +   D  E         +L          + + H    TG  +++  +  
Sbjct: 139 LADMLQQGYTLRLVDSPE---------ELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTA 189

Query: 162 LLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSL-PTGMGIVCASPKALE 220
           L       AL + D   S  A+   + + G D A+  + K L+  P     V  SP+  +
Sbjct: 190 LSH--ECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCD 247

Query: 221 ASKTAK----SVRVFFDW-KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI 275
                          F     Y     +  +   T  I  L  +   LD+  +  + ++ 
Sbjct: 248 LVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLR 307

Query: 276 ERHRRL 281
            +   L
Sbjct: 308 RKSLAL 313

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* Length = 398

 Score = 62.7 bits (153), Expect = 6e-11
 Identities = 56/307 (18%), Positives = 98/307 (31%), Gaps = 64/307 (20%)

Query: 9   KNHLFVPGPVHIPDQVIRAMNRNNEDY-----RSPAVPALTKTLLEDIKKIFKTTSGTPF 63
           ++  F  GP  +  + ++ +            R   V  L   +   + ++F        
Sbjct: 40  RDGRFGSGPSKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFS------- 92

Query: 64  LIPTT---------GTGAWESALTNTLSPGDRIISFLIGQFSLLW---IDQQQRLNFNVD 111
            +P            T  W++A    +    R +    G+FS  +   + +   +     
Sbjct: 93  -LPDGYEVILGNGGATAFWDAAAFGLI--DKRSLHLTYGEFSAKFASAVSKNPFVG-EPI 148

Query: 112 VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPAL 171
           ++ SD G   +                  I   HNET+TGV      V     E    AL
Sbjct: 149 IITSDPGSAPEPQ--TDPSVDV-------IAWAHNETSTGV-----AVAVRRPEGSDDAL 194

Query: 172 FLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE-ASKTAKSVR- 229
            ++D  S    +   + E          QK  +   G+ +   SP AL      A + R 
Sbjct: 195 VVIDATSGAGGLPVDIAETDAYYF--APQKNFASDGGLWLAIMSPAALSRIEAIAATGRW 252

Query: 230 --VFFDWKDYIKF------YNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRR 280
              F      ++       YN       TP+I  L  L   +D +   G L+  ++R   
Sbjct: 253 VPDFLSLPIAVENSLKNQTYN-------TPAIATLALLAEQIDWLVGNGGLDWAVKRTAD 305

Query: 281 LGKATRL 287
              + RL
Sbjct: 306 --SSQRL 310

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 73/482 (15%), Positives = 129/482 (26%), Gaps = 159/482 (32%)

Query: 4   MYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPF 63
           MY   ++ L+    V     V           R      L + LLE          G   
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNV----------SRLQPYLKLRQALLELRPAKNVLIDGVL- 159

Query: 64  LIPTTGTGAWESALT-NTLSPGDRIISFLIGQFSLLWID------------QQQRLNFNV 110
                G+G  ++ +  +               F + W++              Q+L + +
Sbjct: 160 -----GSG--KTWVALDVCLSYKVQCKM---DFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 111 D---VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR 167
           D      SD     KL +          H+I+A                 ++R+LL    
Sbjct: 210 DPNWTSRSDHSSNIKLRI----------HSIQA-----------------ELRRLLKSKP 242

Query: 168 HP-ALFLVDGVSSI---------CAI----------DFRMDEWGIDVALTGSQKALSLPT 207
           +   L ++  V +          C I          DF        ++L      L+   
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 208 GMGIVCA-----SPKAL--EASKT--------AKSVRVFFD-WKDYIKFYNLGTFWPYTP 251
              +         P+ L  E   T        A+S+R     W D  K  N       T 
Sbjct: 303 VKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWKHVN---CDKLTT 357

Query: 252 SIQL-LYGLRAAL------DL-IFEEGL---ENVIERHRRLGKATRLAVEAWG------- 293
            I+  L  L  A        L +F         ++                W        
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL-------------IWFDVIKSDV 404

Query: 294 ---LKNCTQK---EEWFSDTVTAV------IVPSHINSSEIVRRAWQRYNLSL-----GL 336
              +    +    E+   ++  ++      +     N   + R     YN+        L
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464

Query: 337 GLNKVAGKVFR-IGHLGHLNELQLLGCLAGVEMILKDVGY-PVKL-GSGVA-AASAYLQN 392
               +    +  IGH  HL  ++    +    M+  D  +   K+     A  AS  + N
Sbjct: 465 IPPYLDQYFYSHIGH--HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522

Query: 393 NI 394
            +
Sbjct: 523 TL 524

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* Length = 465

 Score = 53.9 bits (129), Expect = 4e-08
 Identities = 35/224 (15%), Positives = 71/224 (31%), Gaps = 12/224 (5%)

Query: 89  SFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHT--IKAICIVHN 146
           +F    +++    Q   LN    +      EG +   +   L         I  I     
Sbjct: 164 AFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGV 223

Query: 147 ETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSL- 205
              TG   N+  + K             D   ++  ++  + +WG+D A   S K L+  
Sbjct: 224 HFYTGQHFNIPAITKAGQA--KGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAG 281

Query: 206 PTGMGIVCASPKALEASK----TAKSVRVFFDWKDYIKFY---NLGTFWPYTPSIQLLYG 258
             G+       K     K          +   +K   K      +  F    P I L+  
Sbjct: 282 AGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCS 341

Query: 259 LRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEE 302
           L A+L++  +  ++ + ++   L       ++    K+    ++
Sbjct: 342 LHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKK 385

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Length = 390

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 42/236 (17%), Positives = 67/236 (28%), Gaps = 47/236 (19%)

Query: 81  LSPGDRIISFLIGQFSLL--------WIDQQQRLNFNVDVVE-SDWGEGA-KLDVLASKL 130
              GD I+       +                R          +          VLA+ L
Sbjct: 98  WHQGDEIL------LTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHL 151

Query: 131 AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY--RHPALFLVDGVSSI--CAIDFR 186
              T    + + + H    TG    L+++  +   +   +P   LVDG  S     +DF 
Sbjct: 152 GPKT----RLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFS 207

Query: 187 MDEWGID-VALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL-G 244
                +D  A TG  K  + P G+G +      L           +  W+          
Sbjct: 208 --RLEVDYYAFTG-HKWFAGPAGVGGLYIHGDCLGEINP-----TYVGWRSITYGAKGEP 259

Query: 245 TFW---PY-----TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW 292
           T W          T +     GL AAL L   +G      +        + +   W
Sbjct: 260 TGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAIC-----QRSEFLW 310

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	401
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	100.0
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	100.0
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	100.0
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	100.0
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	100.0
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	100.0
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	100.0
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	100.0
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	100.0
1iug_A	352	Putative aspartate aminotransferase; wild type, py	100.0
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	100.0
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	100.0
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	100.0
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	100.0
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	100.0
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	100.0
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	100.0
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	100.0
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	100.0
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	100.0
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	100.0
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	100.0
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	100.0
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	100.0
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	100.0
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	100.0
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	100.0
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	100.0
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	100.0
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	100.0
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	100.0
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	100.0
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	100.0
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	100.0
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	100.0
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	100.0
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	100.0
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	100.0
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	100.0
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	100.0
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	100.0
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	100.0
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	100.0
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	100.0
3nra_A	407	Aspartate aminotransferase; structural genomics, j	100.0
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	100.0
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	100.0
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	100.0
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	100.0
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	100.0
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	100.0
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	100.0
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	100.0
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	100.0
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	100.0
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	100.0
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	100.0
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	100.0
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	100.0
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	100.0
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	100.0
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	100.0
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	100.0
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	100.0
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	100.0
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	100.0
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	100.0
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	100.0
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	100.0
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	100.0
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	100.0
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.98
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.98
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.98
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.98
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.98
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.98
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.98
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.98
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.98
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.97
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.97
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.97
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.97
1svv_A	359	Threonine aldolase; structural genomics, structura	99.97
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.97
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.97
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.97
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.97
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.97
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.97
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.97
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.97
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.97
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.97
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.97
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.97
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.97
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.97
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.97
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.97
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.97
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.97
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.97
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.97
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.97
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.97
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.97
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.97
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.97
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.97
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.97
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.97
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.97
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.97
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.97
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.97
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.97
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.97
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.97
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.97
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.96
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.96
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.96
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.96
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.96
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.96
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.96
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.96
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.96
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.96
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.96
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.96
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.96
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.96
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.96
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.96
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.96
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.96
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.96
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.96
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.96
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.96
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.96
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.96
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.96
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.96
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.96
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.96
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.96
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.96
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.96
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.96
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.96
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.96
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.95
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.95
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.95
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.95
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.95
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.95
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.95
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.95
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.95
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.95
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.95
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.95
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.95
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.95
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.95
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.95
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.95
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.95
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.95
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.95
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.95
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.95
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.95
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.95
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.91
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.95
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.95
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.95
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.95
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.95
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.95
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.94
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.94
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.94
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.94
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.94
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.94
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.94
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.94
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.94
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.94
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.94
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.94
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.94
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.94
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.94
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.94
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.94
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.94
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.94
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.93
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.93
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.93
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.93
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.93
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.93
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.93
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.93
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.93
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.93
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.93
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.92
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.92
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.92
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.91
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.91
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.91
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.91
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.9
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.9
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.9
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.89
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.89
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.89
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.88
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.79
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.87
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.86
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.86
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.84
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.73

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=100.00  E-value=1.8e-45  Score=352.37  Aligned_cols=380  Identities=24%  Similarity=0.406  Sum_probs=323.3

Q ss_pred             CCCcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCe
Q 015729            7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR   86 (401)
Q Consensus         7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~   86 (401)
                      +...++|.|||.++++++++++.+....++.+.+.+...++++.+++++|.+.++.+++++|+++|++.++.+++++||+
T Consensus        11 ~~~~~~~~pgp~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd~   90 (411)
T 3nnk_A           11 PPSRLLMGPGPINADPRVLRAMSSQLIGQYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRPGDK   90 (411)
T ss_dssp             CCCCEEESSSCCCCCHHHHHHHTSCCCCTTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTCE
T ss_pred             CccceeecCCCCCCCHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCCE
Confidence            44679999999999999999999976666666777889999999999999987666888999999999999999999999


Q ss_pred             EEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhc
Q 015729           87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY  166 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~  166 (401)
                      |+++.++|++..+...++..|++++.++.+.++.+|++++++++++   +++++|++++++||||.+.|+++|.++|++ 
T Consensus        91 Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~-  166 (411)
T 3nnk_A           91 VLVPVFGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKR---IRPRLLLTVQGDTSTTMLQPLAELGEICRR-  166 (411)
T ss_dssp             EEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH---HCCSEEEEESEETTTTEECCCTTHHHHHHH-
T ss_pred             EEEecCCchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhh---CCCeEEEEeCCCCCcceeccHHHHHHHHHH-
Confidence            9999999988655677888999999999988888999999999985   256999999999999999999999999999 


Q ss_pred             CCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCC------------------CC
Q 015729          167 RHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK------------------SV  228 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~------------------~~  228 (401)
                       +|+++|+|++|+.+..+++....++|++++|+||+++++.|+|+++++++..+.+....                  ..
T Consensus       167 -~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~  245 (411)
T 3nnk_A          167 -YDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIY  245 (411)
T ss_dssp             -HTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCS
T ss_pred             -cCCEEEEECCcccCCcccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccccccccccCCCCc
Confidence             99999999999998888888888899999999999888899999999999988776543                  22


Q ss_pred             ccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCcee
Q 015729          229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV  308 (401)
Q Consensus       229 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~  308 (401)
                      ..+.+............+..++++...++++.++++.+.+.|+++..+++.++++++.+.|+++|+++..+... ..+.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~  324 (411)
T 3nnk_A          246 SNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLKH-KMNNV  324 (411)
T ss_dssp             CSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGG-BCSSE
T ss_pred             ccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCCccc-ccccE
Confidence            33444443333332333456678898899999999988888889999999999999999999988887764322 34568


Q ss_pred             EEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEee-cccCCHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 015729          309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGH-LGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAAS  387 (401)
Q Consensus       309 ~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~-~~~~~~~di~~~~~~i~~~l~~~~~~~~~~~~~~~~~  387 (401)
                      +++.+|++.+..++.+.|.+++||.+++|+....++++||++ ....+++|+++++++|++++++++.+...+.++.+|.
T Consensus       325 ~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~  404 (411)
T 3nnk_A          325 LGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLKFPTTQGAAMQAAW  404 (411)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            888887777889999999877799999987666678999997 4456899999999999999999999888888899988


Q ss_pred             HHHHc
Q 015729          388 AYLQN  392 (401)
Q Consensus       388 ~~~~~  392 (401)
                      +.|.+
T Consensus       405 ~~~~~  409 (411)
T 3nnk_A          405 DHYRS  409 (411)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            88754

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=100.00  E-value=1.2e-45  Score=351.49  Aligned_cols=388  Identities=25%  Similarity=0.388  Sum_probs=319.2

Q ss_pred             CCCCCCCCCcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc
Q 015729            1 MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT   80 (401)
Q Consensus         1 ~~~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~   80 (401)
                      |+|+......|++.++|.+.++.+++++.+....+.++...+...++++.+++++|.++ +.+++++|+|+|+..++.++
T Consensus         1 ~~fp~~~~~~yl~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-~~v~~t~g~t~a~~~~~~~~   79 (392)
T 2z9v_A            1 MRYPEHADPVITLTAGPVNAYPEVLRGLGRTVLYDYDPAFQLLYEKVVDKAQKAMRLSN-KPVILHGEPVLGLEAAAASL   79 (392)
T ss_dssp             CCCCTTSCCSEECSSSCCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCSS-CCEEESSCTHHHHHHHHHHH
T ss_pred             CCcccCCCcceeecCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhCCCC-CEEEEeCCchHHHHHHHHHh
Confidence            89999999999999999999999999999977665555566778999999999999874 45999999999999999888


Q ss_pred             CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHH
Q 015729           81 LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVR  160 (401)
Q Consensus        81 ~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~  160 (401)
                      +++||+|+++.++|++..+...++..|++++.++.+.++.+|++++++++++.  ++++++++++++||||.+.|+++|.
T Consensus        80 ~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~--~~~~~v~~~~~~nptG~~~~l~~i~  157 (392)
T 2z9v_A           80 ISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAH--PEITVVSVCHHDTPSGTINPIDAIG  157 (392)
T ss_dssp             CCTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHC--TTCCEEEEESEEGGGTEECCHHHHH
T ss_pred             cCCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcC--CCCcEEEEeccCCCCceeccHHHHH
Confidence            99999999999999887555666778999999999888789999999999642  3679999999999999999999999


Q ss_pred             HHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCC--CccccchHHHH
Q 015729          161 KLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS--VRVFFDWKDYI  238 (401)
Q Consensus       161 ~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~--~~~~~~~~~~~  238 (401)
                      ++|++  +|+++|+|++|+.+..+++....++|++++|.||++++++|+|+++++++..+++.....  ...+.++....
T Consensus       158 ~l~~~--~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~  235 (392)
T 2z9v_A          158 ALVSA--HGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWE  235 (392)
T ss_dssp             HHHHH--TTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGT
T ss_pred             HHHHH--cCCeEEEEcccccCCcccccccccceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCceeccHHHHH
Confidence            99999  999999999999887776666667999999999998888999999999998887754321  00122211111


Q ss_pred             HHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCC
Q 015729          239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN  318 (401)
Q Consensus       239 ~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  318 (401)
                      ..+.......++++...++++.++++.+.+.|+++..+++.++++++.+.|+++|+++..+.+....+.++++.+|++.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  315 (392)
T 2z9v_A          236 NAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMGLSVWAASDSIASPTTTAVRTPDGVD  315 (392)
T ss_dssp             TTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCTTEEEEECCTTCC
T ss_pred             hhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCeeccCCccccCCceEEEECCCCCC
Confidence            11111123355788888888889999888777889999999999999999998887776522212345577888876678


Q ss_pred             HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecc-cCCHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHcc
Q 015729          319 SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNN  393 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~-~~~~~di~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  393 (401)
                      ..++.+.|.+++||.+.++..+..++++||++++ .++++|+++++++|++++++++.+++.+.+++++.+.++.|
T Consensus       316 ~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (392)
T 2z9v_A          316 EKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAGRKLAIGKGIEAALAVIDAD  391 (392)
T ss_dssp             HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcCCCccccHHHHHHHHHHhcc
Confidence            8899999987669999988654456789999665 78999999999999999999999999999999999888765

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=100.00  E-value=3.1e-44  Score=344.32  Aligned_cols=380  Identities=26%  Similarity=0.456  Sum_probs=321.3

Q ss_pred             CCCcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCe
Q 015729            7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR   86 (401)
Q Consensus         7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~   86 (401)
                      +...++|+|+|.++++++++++.+....+..+...+...++++.+++++|.+++..+++++|+|+|+..++.+++++||+
T Consensus         9 ~~~~~~~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~gd~   88 (416)
T 3isl_A            9 TPLRTIMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDD   88 (416)
T ss_dssp             CCCCEECSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCTTCE
T ss_pred             cccceeecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCCCCE
Confidence            45678999999999999999999865555556667889999999999999987653458999999999999999999999


Q ss_pred             EEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhc
Q 015729           87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY  166 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~  166 (401)
                      |+++.++|++..+...++..|++++.++.+.++.+|++++++++++   +++++|++++++||||.+.|+++|.++|++ 
T Consensus        89 Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~-  164 (416)
T 3isl_A           89 VLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKK---VKPKIVAMVHGETSTGRIHPLKAIGEACRT-  164 (416)
T ss_dssp             EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH---HCCSEEEEESEETTTTEECCCHHHHHHHHH-
T ss_pred             EEEecCCcccHHHHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhh---CCCcEEEEEccCCCCceecCHHHHHHHHHH-
Confidence            9999999988666677888999999999998888999999999984   246999999999999999999999999999 


Q ss_pred             CCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCC--------------------
Q 015729          167 RHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK--------------------  226 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~--------------------  226 (401)
                       +|+++|+|++|+.+..+++....++|++++|+||++.++.|+|++++++++.+.+...+                    
T Consensus       165 -~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~  243 (416)
T 3isl_A          165 -EDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRP  243 (416)
T ss_dssp             -TTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC------------------CCC
T ss_pred             -cCCEEEEECCccccCCCcchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCC
Confidence             99999999999998888888888899999999999888999999999999988876532                    


Q ss_pred             CCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCc
Q 015729          227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD  306 (401)
Q Consensus       227 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~  306 (401)
                      ....+.+...+........+..++++...++++.++++.+...|+++..+++.++++++.+.|+++|+++..+.. ...+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~  322 (416)
T 3isl_A          244 ITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDS-CKMP  322 (416)
T ss_dssp             CSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGG-GBCT
T ss_pred             CCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCcc-ccCC
Confidence            223344444443333333344667888888999999998888888999999999999999999998888776543 2345


Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHH-HHHHHHHHHHHHHhcCCCCCcchHHHH
Q 015729          307 TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQ-LLGCLAGVEMILKDVGYPVKLGSGVAA  385 (401)
Q Consensus       307 ~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~d-i~~~~~~i~~~l~~~~~~~~~~~~~~~  385 (401)
                      .++++.+|++.+..++.+.|.+++||.+.+|..+..++++||++..+.+++| +++++++|++++++++...+.+.++++
T Consensus       323 ~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~~~~~~~~~~~~  402 (416)
T 3isl_A          323 VVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHNAGIEAGKALQA  402 (416)
T ss_dssp             TEEEEECCTTCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTTCCCCTTHHHHH
T ss_pred             cEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcCCCcccchHHHH
Confidence            6788888777788999999987779999998766667899999877677766 999999999999999999999888988


Q ss_pred             HHHHHHc
Q 015729          386 ASAYLQN  392 (401)
Q Consensus       386 ~~~~~~~  392 (401)
                      +.+.|.+
T Consensus       403 ~~~~~~~  409 (416)
T 3isl_A          403 ALDVYEN  409 (416)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            8887744

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=100.00  E-value=5.1e-44  Score=339.03  Aligned_cols=374  Identities=29%  Similarity=0.468  Sum_probs=314.9

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCC-ceEEecCChhHHHHHHHhccCCCCCeE
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGTGAWESALTNTLSPGDRI   87 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~~i~~~~g~t~a~~~~~~~~~~~gd~v   87 (401)
                      ..++|.|||.++++++++++.+....+..+...+...++++.+++++|.+.+ +++++++|+++|+. ++.+++++||+|
T Consensus         2 ~~~~~~~gp~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~v   80 (384)
T 3zrp_A            2 DKLLLHVGPTTIKEDVLVAGLENNVGFTSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLKPNDKI   80 (384)
T ss_dssp             ----CCSSCSCCCHHHHHHTTCCSCCTTSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEE
T ss_pred             CceeccCCCCCCCHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEE
Confidence            3579999999999999999999776666667778899999999999999763 56999999999999 998999999999


Q ss_pred             EEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcC
Q 015729           88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR  167 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~  167 (401)
                      +++.++|++..+...++..|++++.++.+.++.+|++++++++++   ++++++++++++||||.+.|+++|.++|++  
T Consensus        81 i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~--  155 (384)
T 3zrp_A           81 LVVSNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRK---SEYKLVALTHVETSTGVREPVKDVINKIRK--  155 (384)
T ss_dssp             EEECSSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHH---SCEEEEEEESEETTTTEECCHHHHHHHHGG--
T ss_pred             EEecCCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHh---CCCcEEEEeCCCCCCceECcHHHHHHHHHh--
Confidence            999999888666677788999999999998888999999999986   357999999999999999999999999999  


Q ss_pred             CCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHh-ccCCCCccccchHHHH---HHhhc
Q 015729          168 HPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEAS-KTAKSVRVFFDWKDYI---KFYNL  243 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~  243 (401)
                      +|+++|+|++|+.+..+.+....++|++++|.||+++++.|+|+++++++.++.+ .+.....++.+.....   ..++.
T Consensus       156 ~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (384)
T 3zrp_A          156 YVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEE  235 (384)
T ss_dssp             GEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHT
T ss_pred             cCCEEEEECcccccCccccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcc
Confidence            9999999999999888888877889999999999998889999999999998887 5544444455444333   33443


Q ss_pred             CCCCC-CCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHH
Q 015729          244 GTFWP-YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEI  322 (401)
Q Consensus       244 g~~~~-~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  322 (401)
                      |..+. ++++...++++.++++.+...++++..++++++++++.+.|+++|+++..+.+....+.++++.++. .+..++
T Consensus       236 ~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  314 (384)
T 3zrp_A          236 GKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILKV-ADPQKV  314 (384)
T ss_dssp             TCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECSS-SCHHHH
T ss_pred             cCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECCC-CCHHHH
Confidence            22223 3788888889999999888888899999999999999999999888877654233455677888865 678899


Q ss_pred             HHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Q 015729          323 VRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQ  391 (401)
Q Consensus       323 ~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~  391 (401)
                      .+.|.++ ||.+.+|..... +++|+++...++++|+++++++|++++++++...+.+.++.++.+-|.
T Consensus       315 ~~~l~~~-gi~v~~g~~~~~-~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  381 (384)
T 3zrp_A          315 LAGTVNE-GVEFAPGVHPAF-KYFRIGHMGWVTPNDAIIAISVIERTLRKLGEPIRFGEGVKAVEEVLF  381 (384)
T ss_dssp             HHHHHTT-TCCCEECCCTTC-CEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCCCCTTCHHHHHHHHHH
T ss_pred             HHHHHHC-CEEEecCCCCCc-CEEEEeccccCCHHHHHHHHHHHHHHHHHcCCCcCcchHHHHHHHHHh
Confidence            9999877 999988864322 789999888899999999999999999999999999999888887764

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=100.00  E-value=1.2e-42  Score=330.55  Aligned_cols=363  Identities=26%  Similarity=0.366  Sum_probs=305.3

Q ss_pred             CCCcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCe
Q 015729            7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR   86 (401)
Q Consensus         7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~   86 (401)
                      +...++|.|||..+++++++++.+....+..+.+.+...++++.++++++.+.++.+++++|+++|+..++.+++++||+
T Consensus        21 ~~~~~~~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~gd~  100 (393)
T 3kgw_A           21 VPTRLLLGPGPSNLAPRVLAAGSLRMIGHMQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPGDS  100 (393)
T ss_dssp             CCCCEECSSSCCCCCHHHHHHTTCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTTCE
T ss_pred             CccceeccCCCCCCCHHHHHHhcccccCcccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCCCE
Confidence            34679999999999999999999866556666667888999999999999987666999999999999999999999999


Q ss_pred             EEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhc
Q 015729           87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY  166 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~  166 (401)
                      |+++.++|++..+...++..|++++.++.+.++.+|++++++++++   ++++++++++++||||.+.|+++|.++|++ 
T Consensus       101 vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~-  176 (393)
T 3kgw_A          101 FLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQ---HKPVLLFLVHGESSTGVVQPLDGFGELCHR-  176 (393)
T ss_dssp             EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH---HCCSEEEEESEETTTTEECCCTTHHHHHHH-
T ss_pred             EEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhh---CCCcEEEEeccCCcchhhccHHHHHHHHHH-
Confidence            9999998887666677888999999999988888999999999985   256999999999999999999999999999 


Q ss_pred             CCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCC--CccccchHHHHHHhh--
Q 015729          167 RHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS--VRVFFDWKDYIKFYN--  242 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--  242 (401)
                       +|+++|+|++|+.+..+++....++|++++|+||+++++.|+|++++++++.+.+.....  ...+.++......+.  
T Consensus       177 -~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (393)
T 3kgw_A          177 -YQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCE  255 (393)
T ss_dssp             -TTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCS
T ss_pred             -cCCEEEEECCccccCcccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhc
Confidence             999999999999888888777788999999999999888999999999999888765432  233344333222221  


Q ss_pred             -cCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHH
Q 015729          243 -LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSE  321 (401)
Q Consensus       243 -~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (401)
                       ...++.++++...++++.++++.+.++++++..+++.++++++.+.|+++|+++..+......+.++++.+|++.+..+
T Consensus       256 ~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (393)
T 3kgw_A          256 GETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPAGYNWRD  335 (393)
T ss_dssp             SSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECCTTBCHHH
T ss_pred             cccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCCCCCCHHH
Confidence             1234456788888889999999888888899999999999999999999888876544344556677888877778889


Q ss_pred             HHHHHHhhCCeEEccCCCCCCCcEEEEeecc-cCCHHHHHHHHHHHHHHHHhcC
Q 015729          322 IVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       322 l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~-~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      +.+.|.+++||.+.+|..+..++++||++.+ ..+++|+++++++|+++++++.
T Consensus       336 ~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~  389 (393)
T 3kgw_A          336 IVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCP  389 (393)
T ss_dssp             HHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhh
Confidence            9999987779999998766567899999745 4599999999999999998764

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=4.6e-42  Score=325.89  Aligned_cols=363  Identities=28%  Similarity=0.454  Sum_probs=300.8

Q ss_pred             CCCCcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCC
Q 015729            6 APGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGD   85 (401)
Q Consensus         6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd   85 (401)
                      .....|++.++|.++++++++++.+....++++...+...++++.+++++|.+.++.+++++|+++|+..++.+++++||
T Consensus        17 ~~~~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd   96 (386)
T 2dr1_A           17 VKPKYKLFTAGPVACFPEVLEIMKVQMFSHRSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGG   96 (386)
T ss_dssp             HSCCSEECCSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTC
T ss_pred             cCccceeecCCCcCCcHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCC
Confidence            44578999999999999999999997665555555778899999999999987345599999999999999998899999


Q ss_pred             eEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhh
Q 015729           86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE  165 (401)
Q Consensus        86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~  165 (401)
                      +|+++.++|++..+...++..|++++.++.+.++.+|++++++++++.  ++++++++++++||||.+.|+++|.++|++
T Consensus        97 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~--~~~~~v~~~~~~nptG~~~~l~~i~~l~~~  174 (386)
T 2dr1_A           97 KVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKN--PDVEAVTITYNETSTGVLNPLPELAKVAKE  174 (386)
T ss_dssp             EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHC--TTCCEEEEESEETTTTEECCHHHHHHHHHH
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcC--CCCcEEEEEeecCCcchhCCHHHHHHHHHH
Confidence            999999998875455677889999999999888789999999999642  367999999999999999999999999999


Q ss_pred             cCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhh-cC
Q 015729          166 YRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYN-LG  244 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g  244 (401)
                        +|+++|+|++|+.+..+++....++|++++|.||+++++.|+|++++++++.+.+.......+++++......+. .+
T Consensus       175 --~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (386)
T 2dr1_A          175 --HDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKE  252 (386)
T ss_dssp             --TTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHS
T ss_pred             --cCCeEEEEccccccCccccccccCCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCC
Confidence              999999999999887767777778999999999999877789999999998888765433444555544333332 11


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHH
Q 015729          245 TFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIV  323 (401)
Q Consensus       245 ~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  323 (401)
                       ...++++...++++.++++.+.+. ++++.+++++++++++.+.|+++|+++..+.+ ...+.++++.+|.+.+..++.
T Consensus       253 -~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  330 (386)
T 2dr1_A          253 -STPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPG-HESPTITAVLTPPGIKGDEVY  330 (386)
T ss_dssp             -SCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTT-CBCSSEEEEECCTTCCHHHHH
T ss_pred             -CCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCcc-ccCCceEEEEcCCCCCHHHHH
Confidence             224468888888888999988776 68899999999999999999998887765432 224567888887667888999


Q ss_pred             HHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          324 RRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       324 ~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                      +.|.++ ||.+.++..+..++++||++..+++++|+++++++|++++++++.
T Consensus       331 ~~l~~~-gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  381 (386)
T 2dr1_A          331 EAMRKR-GFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINELKK  381 (386)
T ss_dssp             HHHHHT-TEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHC-CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            999887 999998875445679999998888999999999999999987644

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=100.00  E-value=3.6e-42  Score=325.63  Aligned_cols=354  Identities=20%  Similarity=0.315  Sum_probs=294.8

Q ss_pred             CCcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCC-ceEEecCChhHHHHHHHhccCCCCCe
Q 015729            8 GKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGTGAWESALTNTLSPGDR   86 (401)
Q Consensus         8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~~i~~~~g~t~a~~~~~~~~~~~gd~   86 (401)
                      +..++|+|||.++++++++++.+....++.+.+.+...++++.+++++|.+.+ +.+++++|+++|++.++.+++++||+
T Consensus        18 ~~~~~~~pgp~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~   97 (376)
T 3f0h_A           18 QGMLNFTVGPVMSSEEVRAIGAEQVPYFRTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDK   97 (376)
T ss_dssp             SSCEECSSSSCCCCHHHHHHHTSCCCCCSSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTCC
T ss_pred             cCceeecCCCCCCcHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCCe
Confidence            47899999999999999999999776666666778889999999999999754 43455899999999999999999999


Q ss_pred             EEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhc
Q 015729           87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY  166 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~  166 (401)
                      |+++.+++++..+...+...|++++.++.+.++.+|+++++++++    ++++++++++++||||.+.|+++|.++|++ 
T Consensus        98 vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~-  172 (376)
T 3f0h_A           98 VLVIDGGSFGHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDN----QNFTGLLVNVDETSTAVLYDTMMIGEFCKK-  172 (376)
T ss_dssp             EEEEESSHHHHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTT----SCCCEEEEESEETTTTEECCHHHHHHHHHH-
T ss_pred             EEEEeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhc----cCceEEEEecccCCcceecCHHHHHHHHHH-
Confidence            999999888876656778889999999998888899999998765    467999999999999999999999999999 


Q ss_pred             CCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCC
Q 015729          167 RHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTF  246 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  246 (401)
                       +|+++|+|++++.+..+++....++|++++|+||++++++|+|++++++++.+++........+.+..........+ .
T Consensus       173 -~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  250 (376)
T 3f0h_A          173 -NNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERG-Q  250 (376)
T ss_dssp             -TTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTT-C
T ss_pred             -cCCEEEEEcCccccCccccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccC-C
Confidence             99999999999998887777777899999999999987899999999999988887654444455555444433322 2


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHH
Q 015729          247 WPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRR  325 (401)
Q Consensus       247 ~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  325 (401)
                      +.++++...++++.++++.+.+. ++++..++..++++++.+.|+++++++..+.   ....++.+. +.+.+..++.+.
T Consensus       251 ~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~l~~~  326 (376)
T 3f0h_A          251 TPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSES---PANGVTSVH-PTTANAYDIFLK  326 (376)
T ss_dssp             CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSS---BBTTEEEEE-ESSSCHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccc---cCceEEEEe-CCCCCHHHHHHH
Confidence            35678887778899999988887 5889999999999999999988876665432   233344444 456788899999


Q ss_pred             HHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          326 AWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       326 L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      |.+++||.+++|+....++++|+++...++++|+++++++|++++++
T Consensus       327 l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~  373 (376)
T 3f0h_A          327 LKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR  373 (376)
T ss_dssp             HHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            98877999998865555778999998888999999999999999864

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=100.00  E-value=4.1e-41  Score=320.63  Aligned_cols=362  Identities=25%  Similarity=0.399  Sum_probs=294.5

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEE
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRII   88 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl   88 (401)
                      +.+++.++|.++++++++++.+....++.+.+.....++++.+++++|.+++..+++++|+++|+..++.+++++||+|+
T Consensus        18 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl   97 (396)
T 2ch1_A           18 EKIMMGPGPSNCSKRVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVL   97 (396)
T ss_dssp             CCBCCSSSSCCCCHHHHHHTTSCCCCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEE
T ss_pred             cceeecCCCCCCCHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCCeEE
Confidence            57899999999999999999987654444445567899999999999997653599999999999999999899999999


Q ss_pred             EEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCC
Q 015729           89 SFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRH  168 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~  168 (401)
                      ++.++|+++.+...++..|++++.++.+.++.+|++++++++++.   ++++|++++++||||.+.|+++|.++|++  +
T Consensus        98 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~~~~i~~l~~~--~  172 (396)
T 2ch1_A           98 IAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELH---QPKCLFLTHGDSSSGLLQPLEGVGQICHQ--H  172 (396)
T ss_dssp             EEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHH---CCSEEEEESEETTTTEECCCTTHHHHHHH--T
T ss_pred             EEcCCcccHHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhC---CCCEEEEECCCCCCceecCHHHHHHHHHH--c
Confidence            999998887554577889999999999888789999999999751   46899999999999999999999999999  9


Q ss_pred             CcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCC--CCccccchHHHHHHhhc---
Q 015729          169 PALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK--SVRVFFDWKDYIKFYNL---  243 (401)
Q Consensus       169 ~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---  243 (401)
                      |+++|+|++|+++..+++....++|++++|.||+++++.|+|+++++++.++.+...+  ....+++.......+..   
T Consensus       173 ~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (396)
T 2ch1_A          173 DCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDE  252 (396)
T ss_dssp             TCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSS
T ss_pred             CCEEEEEccccccCCccchhhcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcc
Confidence            9999999999988777777777889999999999988899999999999888775432  22223333222222211   


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHH
Q 015729          244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIV  323 (401)
Q Consensus       244 g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  323 (401)
                      ..+..++++...++++.++++.+.+.++++..++++++++++.+.|+++|+++..+..+...+.++++.+|++.+..++.
T Consensus       253 ~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (396)
T 2ch1_A          253 PKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVDWWKVS  332 (396)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCHHHHH
T ss_pred             cCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEEEcCCCCCHHHHH
Confidence            12335568887888888899887667788999999999999999999888887665432344557888887677888999


Q ss_pred             HHHHhhCCeEEccCCCCCCCcEEEEeecc-cCCHHHHHHHHHHHHHHHHhcCC
Q 015729          324 RRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       324 ~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~-~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                      +.|.+++||.+.+|..+..++++||++.+ ..+++|+++++++|++++++++-
T Consensus       333 ~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~~  385 (396)
T 2ch1_A          333 QYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHP  385 (396)
T ss_dssp             HHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhCc
Confidence            99987669999988655557889999844 56899999999999999987653

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=100.00  E-value=4.1e-41  Score=320.27  Aligned_cols=364  Identities=28%  Similarity=0.405  Sum_probs=295.5

Q ss_pred             CCCcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCe
Q 015729            7 PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR   86 (401)
Q Consensus         7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~   86 (401)
                      .++.|++.+||.++++++++++.+....++.+...+...++++.+++++|.++.+.+++++|+|+|+..++.+++++||+
T Consensus        17 ~~~~~~~~~g~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~   96 (393)
T 2huf_A           17 TPNKLLMGPGPSNAPQRVLDAMSRPILGHLHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDV   96 (393)
T ss_dssp             CCCCEECSSSCCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTCE
T ss_pred             CCCeEEecCCCCCCCHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCE
Confidence            45789999999999999999999876655545566789999999999999876545999999999999999888999999


Q ss_pred             EEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhc
Q 015729           87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY  166 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~  166 (401)
                      |+++.++|++..+...++..|++++.++.+.++.+|++++++++++   .++++|++++++||||.+.|+++|.++|++ 
T Consensus        97 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~l~~i~~~~~~-  172 (393)
T 2huf_A           97 ILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLI---HKPSVLFLTQGDSSTGVLQGLEGVGALCHQ-  172 (393)
T ss_dssp             EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH---HCCSEEEEESEETTTTEECCCTTHHHHHHH-
T ss_pred             EEEECCCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhc---cCCcEEEEEccCCCccccCCHHHHHHHHHH-
Confidence            9999999988655556677899999999988778999999999975   146999999999999999999999999999 


Q ss_pred             CCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCC--CCccccchHHHHHHhhc-
Q 015729          167 RHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK--SVRVFFDWKDYIKFYNL-  243 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-  243 (401)
                       +|+++|+|++|+++..+.+....++|++++|+||++++++|+|++++++++.+.+....  ...++.+.......+.. 
T Consensus       173 -~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (393)
T 2huf_A          173 -HNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCF  251 (393)
T ss_dssp             -TTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCS
T ss_pred             -cCCEEEEEcccccCCCCcchhhcCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccc
Confidence             99999999999988777776667899999999999888899999999999988876542  11222222211121210 


Q ss_pred             --CCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHH
Q 015729          244 --GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSE  321 (401)
Q Consensus       244 --g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (401)
                        ..+..++++...++++.++++.+.+.++++..++..++++++.+.|+++|+++..+.. .+.+.++++.++.+.+..+
T Consensus       252 ~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~  330 (393)
T 2huf_A          252 GRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYADPK-DRLSTVTTIKVPQGVDWLK  330 (393)
T ss_dssp             SSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGG-GBCTTEEEEECCTTCCHHH
T ss_pred             cccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCcc-ccCCcEEEEEcCCCCCHHH
Confidence              1223456888888888889988877778889999999999999999988887765432 1344577788866678889


Q ss_pred             HHHHHHhhCCeEEccCCCCCCCcEEEEeecc-cCCHHHHHHHHHHHHHHHHhcCCC
Q 015729          322 IVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNELQLLGCLAGVEMILKDVGYP  376 (401)
Q Consensus       322 l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~-~~~~~di~~~~~~i~~~l~~~~~~  376 (401)
                      +.+.|.+++||.+.++..+..++++||++.+ ..+++|+++++++|++++++++..
T Consensus       331 ~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~~~  386 (393)
T 2huf_A          331 AAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKPD  386 (393)
T ss_dssp             HHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcCCC
Confidence            9999986669999988665456799999855 457999999999999999887553

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=100.00  E-value=8.9e-42  Score=319.88  Aligned_cols=344  Identities=25%  Similarity=0.406  Sum_probs=285.5

Q ss_pred             ccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEE
Q 015729           11 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISF   90 (401)
Q Consensus        11 ~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   90 (401)
                      |||.|||.++++.+++++.+....+.++...+...++++.+++++|.++ +.+++++|+++|+..++.+++++||+|+++
T Consensus         3 ~l~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   81 (352)
T 1iug_A            3 WLLTPGPVRLHPKALEALARPQLHHRTEAAREVFLKARGLLREAFRTEG-EVLILTGSGTLAMEALVKNLFAPGERVLVP   81 (352)
T ss_dssp             EECSSSSCCCCHHHHHHHHSCCCCTTSHHHHHHHHHHHHHHHHHHTCSS-EEEEEESCHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             ccccCCCCCCCHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHhCCCC-ceEEEcCchHHHHHHHHHhccCCCCeEEEE
Confidence            8999999999999999999977666556666778999999999999874 559999999999999999989999999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCC--
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRH--  168 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~--  168 (401)
                      .++|++..+...++..|++++.++.+.++.+|++++++       ++++++++++++||||.+.|+++|.++|++  +  
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~-------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~--~~~  152 (352)
T 1iug_A           82 VYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAK-------EGYAGLLLVHSETSTGALADLPALARAFKE--KNP  152 (352)
T ss_dssp             ECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSCC-------SSCSEEEEESEETTTTEECCHHHHHHHHHH--HCT
T ss_pred             eCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHhc-------cCCcEEEEEEecCCcceecCHHHHHHHHHh--hCC
Confidence            99999876445667789999999998877789888776       256899999999999999999999999999  7  


Q ss_pred             CcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCC
Q 015729          169 PALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP  248 (401)
Q Consensus       169 ~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  248 (401)
                      |+++|+|++|+++..+++....++|++++|.||++.++.|+|+++++++.++++..   ..++.++.........+ .+.
T Consensus       153 ~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~  228 (352)
T 1iug_A          153 EGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKP---RGYYLDLARELKAQKEG-ESA  228 (352)
T ss_dssp             TCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCC---CSSTTCHHHHHHHHTTT-CCS
T ss_pred             CCEEEEECCccccCcceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhC---CCceeeHHHHHhhcccC-CCC
Confidence            99999999999887777766667999999999988888899999999998776654   23344444333333222 335


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHh
Q 015729          249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQ  328 (401)
Q Consensus       249 ~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  328 (401)
                      ++++...++++.++++.+.+. +++.+++++++++++.+.|+++|+++..+.   ..+.++++.++++.+..++.+.|.+
T Consensus       229 ~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~  304 (352)
T 1iug_A          229 WTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEGGLRPVPKR---FSPAVAAFYLPEGVPYARVKEAFAQ  304 (352)
T ss_dssp             SCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHTTCEESCSS---BCTTCEEEECCTTCCHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCcccccc---cCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            678888888888888876655 788999999999999999998887766532   2445788888766788899999987


Q ss_pred             hCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          329 RYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       329 ~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      + ||.+.++..+..++++||++....+++|+++++++|+++++++
T Consensus       305 ~-gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  348 (352)
T 1iug_A          305 R-GAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI  348 (352)
T ss_dssp             T-TEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             C-CEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence            7 9999988754456789999988788999999999999998765

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=100.00  E-value=1e-40  Score=312.63  Aligned_cols=349  Identities=26%  Similarity=0.382  Sum_probs=286.5

Q ss_pred             ccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHhccCCCCCeEEE
Q 015729           11 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIIS   89 (401)
Q Consensus        11 ~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~   89 (401)
                      ++|.|||.++++.+++++.+....++++...+...++++.+++++|.+ +++.+++++|+++|+..++.++++  |+|++
T Consensus         2 ~~~~~gp~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~   79 (353)
T 2yrr_A            2 LLLTPGPTPIPERVQKALLRPMRGHLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR--GPVLV   79 (353)
T ss_dssp             EECSSSSCCCCHHHHGGGGSCCCCTTCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEE
T ss_pred             ccCCCCCCCCCHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEE
Confidence            689999999999999999997766655556677899999999999986 345699999999999999988776  89999


Q ss_pred             EcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCC
Q 015729           90 FLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP  169 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~  169 (401)
                      +.++|+++.+...++..|++++.++.+.++.+|++++++.+++   .+++++++++++||||.+.|+++|.++|++  +|
T Consensus        80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~~~~i~~l~~~--~~  154 (353)
T 2yrr_A           80 LVNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKR---RRYRMVALVHGETSTGVLNPAEAIGALAKE--AG  154 (353)
T ss_dssp             EECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHH---SCCSEEEEESEETTTTEECCHHHHHHHHHH--HT
T ss_pred             EcCCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHh---CCCCEEEEEccCCCcceecCHHHHHHHHHH--cC
Confidence            9998888655566788899999999988888999999999985   156899999999999999999999999999  99


Q ss_pred             cEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCC
Q 015729          170 ALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY  249 (401)
Q Consensus       170 ~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  249 (401)
                      +++|+|++|+++..+.+....++|++++|+||++++++|+|+++++++..+.+..  ....+++........... .+.+
T Consensus       155 ~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~-~~~~  231 (353)
T 2yrr_A          155 ALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTG--KRGWYLDLARVAEHWERG-GYHH  231 (353)
T ss_dssp             CEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCC--CSCSTTCHHHHHHHHTTC-CCSS
T ss_pred             CeEEEEcCcccccccccccccCceEEEecCcccccCCCceEEEEECHHHHHHhcc--CCCccccHHHHhhhhhcC-CCCC
Confidence            9999999998877666655567899999999998888899999999999887753  122333333222221112 3345


Q ss_pred             CCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhh
Q 015729          250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQR  329 (401)
Q Consensus       250 ~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  329 (401)
                      +++...++++.++++.+.+.++++.+++++++++++.+.|+++|+++..+.  ...+.++++.+|++.+..++.+.|.++
T Consensus       232 ~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~  309 (353)
T 2yrr_A          232 TTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYPKA--SPLPTVLVVRPPEGVDADRLVRALYAE  309 (353)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSS--SBCTTEEEEECCTTCCHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccccCc--cCCCeEEEEECCCCCCHHHHHHHHHHC
Confidence            788888888889999887778889999999999999999998887766532  124556778887677888999999877


Q ss_pred             CCeEEccCCCCCCCcEEEEeecccCCHHHHH-HHHHHHHHHHHh
Q 015729          330 YNLSLGLGLNKVAGKVFRIGHLGHLNELQLL-GCLAGVEMILKD  372 (401)
Q Consensus       330 ~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~-~~~~~i~~~l~~  372 (401)
                       ||.+.+|..+..++++|+++....+++|++ +++++|++++++
T Consensus       310 -gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~  352 (353)
T 2yrr_A          310 -GVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL  352 (353)
T ss_dssp             -TEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred             -CEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence             999998875555678999987778999999 999999998764

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=100.00  E-value=1.9e-39  Score=308.78  Aligned_cols=356  Identities=29%  Similarity=0.459  Sum_probs=287.4

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEE
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRII   88 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl   88 (401)
                      +.|++.++|.++++++++++.+....++.....+...++++.+++++|.++..++++++|+++|+..++.+++++||+|+
T Consensus        34 ~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl  113 (393)
T 1vjo_A           34 SRLLLGPGPSNAHPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVL  113 (393)
T ss_dssp             CCEECSSSCCCCCHHHHHHHSSCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEE
T ss_pred             cceeccCCCCCCCHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCEEE
Confidence            57999999999999999999997755544445678889999999999996542599999999999999999899999999


Q ss_pred             EEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCC
Q 015729           89 SFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRH  168 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~  168 (401)
                      ++.++|++..+...++..|++++.++.+.++.+|++++++++++.   +++++++++++||||.+.|+++|.++|++  +
T Consensus       114 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~l~~i~~l~~~--~  188 (393)
T 1vjo_A          114 IGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETH---RPAILALVHAETSTGARQPLEGVGELCRE--F  188 (393)
T ss_dssp             EEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH---CCSEEEEESEETTTTEECCCTTHHHHHHH--H
T ss_pred             EEcCChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhC---CceEEEEeccCCCcceeccHHHHHHHHHH--c
Confidence            999998874455677888999999999888789999999999751   45899999999999999999999999999  9


Q ss_pred             CcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCC--CCccccchHHHHHHhhcCCC
Q 015729          169 PALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK--SVRVFFDWKDYIKFYNLGTF  246 (401)
Q Consensus       169 ~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~  246 (401)
                      |+++|+|++|+++..+++....++|++++|.||+++++.|+|++++++++.+.+....  ...++++..........+..
T Consensus       189 ~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (393)
T 1vjo_A          189 GTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERV  268 (393)
T ss_dssp             TCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCC
T ss_pred             CCEEEEECCccccCcCCcccccCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCC
Confidence            9999999999988777777777899999999999988888999999999888774321  11222222211111111222


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHH
Q 015729          247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRA  326 (401)
Q Consensus       247 ~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  326 (401)
                      ..++++...++++.++++.+.+.++++.++++.++++++.+.|+++|+++..+.. ...+.++++.+|.+.+..++.+.|
T Consensus       269 ~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l  347 (393)
T 1vjo_A          269 YHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKE-YRLPTLTTVCIPDGVDGKAVARRL  347 (393)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGG-GBCSSEEEEECCTTCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcCCcccCCcc-ccCCcEEEEEcCCCCCHHHHHHHH
Confidence            2226888888889999998777678899999999999999999988887765432 223457788887677888999999


Q ss_pred             HhhCCeEEccCCCCCCCcEEEEeecc-cCCHHHHHHHHHHHHHHH
Q 015729          327 WQRYNLSLGLGLNKVAGKVFRIGHLG-HLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       327 ~~~~~i~v~~g~~~~~~~~~Ri~~~~-~~~~~di~~~~~~i~~~l  370 (401)
                      .+++||.+.+|..+..++++||++.+ ..+++++++++++|++++
T Consensus       348 ~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l  392 (393)
T 1vjo_A          348 LNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL  392 (393)
T ss_dssp             HHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred             HhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence            87679999998765557899999644 456778999999999876

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=100.00  E-value=1.7e-40  Score=312.26  Aligned_cols=346  Identities=19%  Similarity=0.263  Sum_probs=284.7

Q ss_pred             CcccccCCCcCChHHHHHHHcc----Cc--CCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCC
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNR----NN--EDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS   82 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~----~~--~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~   82 (401)
                      +.++|.|||..+++++++++.+    ..  ..++.+.+.+...++++.+++++|.+.++++++++|+|+|+..++.++.+
T Consensus         4 ~~~~~~p~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~   83 (362)
T 3ffr_A            4 NKIYFTPGPSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVE   83 (362)
T ss_dssp             CCEEECSSSCCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCS
T ss_pred             cceeccCCCcCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccC
Confidence            4689999999999999955444    33  23445566688999999999999987656799999999999999999887


Q ss_pred             CCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHH
Q 015729           83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKL  162 (401)
Q Consensus        83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l  162 (401)
                      +  +++++.+++++..+...++..|++++.++.+.++.+|+++++  ++    ++++++++++++||||.+.|+++|.++
T Consensus        84 ~--~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~----~~~~~v~~~~~~nptG~~~~l~~i~~l  155 (362)
T 3ffr_A           84 K--KSFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFYPADIT--VP----ADAEIICLTHNETSSGVSMPVEDINTF  155 (362)
T ss_dssp             S--EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCGGGCC--CC----TTCCEEEEESEETTTTEECCHHHHTTS
T ss_pred             C--cEEEEcCcHHHHHHHHHHHHhCCCeEEEecCCCCCCCHHHHh--cc----CCccEEEEEcCCCCcceeCCHHHHHHH
Confidence            7  677777778876666677888999999999888889999998  33    578999999999999999999999999


Q ss_pred             hhhcCC-CcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCC----CccccchHHH
Q 015729          163 LDEYRH-PALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS----VRVFFDWKDY  237 (401)
Q Consensus       163 ~~~~~~-~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~----~~~~~~~~~~  237 (401)
                      |++  + |+++|+|++|+.+..+.+...  +|++++|+||++++++|+|+++++++..+++.....    ...++++..+
T Consensus       156 a~~--~p~~~li~D~a~~~~~~~~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~  231 (362)
T 3ffr_A          156 RDK--NKDALIFVDAVSSLPYPKFDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSM  231 (362)
T ss_dssp             GGG--STTSEEEEECTTTTTSSCCCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHH
T ss_pred             HHh--CCCCEEEEecccccCCcccChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCcccccHHHH
Confidence            999  8 999999999998887766654  899999999999878999999999998776654321    2334455554


Q ss_pred             HHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCC
Q 015729          238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSH  316 (401)
Q Consensus       238 ~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~  316 (401)
                      ......+ .+.++++...++++.++++.+...++++..++..++++++.+.|+++ |+++..+.+...++.++++.+++ 
T Consensus       232 ~~~~~~~-~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-  309 (362)
T 3ffr_A          232 LEKARVN-QTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM-  309 (362)
T ss_dssp             HHHHTTT-CCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS-
T ss_pred             HHHhhcC-CCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC-
Confidence            4444433 34667888888899999998887788999999999999999999998 88877644333556788888865 


Q ss_pred             CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          317 INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       317 ~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                       +..++.+.|.++ ||.+.+|+.+..++++||++...++++|+++++++|++++
T Consensus       310 -~~~~~~~~l~~~-gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~  361 (362)
T 3ffr_A          310 -LPGEINKILEPF-DMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI  361 (362)
T ss_dssp             -CHHHHHHHHGGG-TEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             -CHHHHHHHHHHC-CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence             788999999887 9999998766667899999988889999999999998764

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=100.00  E-value=1.7e-39  Score=308.16  Aligned_cols=361  Identities=25%  Similarity=0.448  Sum_probs=281.7

Q ss_pred             CCCCCcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCC---CCceEEecCChhHHHHHHHhccC
Q 015729            5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTT---SGTPFLIPTTGTGAWESALTNTL   81 (401)
Q Consensus         5 ~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~---~~~~i~~~~g~t~a~~~~~~~~~   81 (401)
                      |++.+.++|+|||..+++++++++.+....++.+.......++++.++++++..   +++.+++++|+|+|+..++.++.
T Consensus         1 ~~~~~~~~~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~   80 (385)
T 2bkw_A            1 MTKSVDTLLIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFI   80 (385)
T ss_dssp             --CCCCEECSSSSCCCCHHHHHTTSCCCCCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHS
T ss_pred             CCCccceeecCCCcCchHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHh
Confidence            456788999999999999999999997765555555556788999999999875   23569999999999999998877


Q ss_pred             ---CCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC-CCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchH
Q 015729           82 ---SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES-DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS  157 (401)
Q Consensus        82 ---~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~  157 (401)
                         ++||+|+++.+++++..+...++..|++++.++. +.++.+|++++++++++   .++++|++++++||||.+.|++
T Consensus        81 ~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~l~  157 (385)
T 2bkw_A           81 LSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ---NSYGAVTVTHVDTSTAVLSDLK  157 (385)
T ss_dssp             CTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH---SCCSEEEEESEETTTTEECCHH
T ss_pred             ccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc---CCCCEEEEEccCCCcCeEcCHH
Confidence               8999999987766665544567788999999998 77778999999999975   2569999999999999999999


Q ss_pred             HHHHHhhhcCC--CcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHH-Hhcc---CCCCccc
Q 015729          158 KVRKLLDEYRH--PALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE-ASKT---AKSVRVF  231 (401)
Q Consensus       158 ~i~~l~~~~~~--~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~-~~~~---~~~~~~~  231 (401)
                      +|.++|++  +  |+++|+|++|+.+..+++....++|++++|+||++++++|+|+++++++.++ ++..   .....++
T Consensus       158 ~i~~~~~~--~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~  235 (385)
T 2bkw_A          158 AISQAIKQ--TSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYF  235 (385)
T ss_dssp             HHHHHHHH--HCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCST
T ss_pred             HHHHHHHh--hCCCCEEEEECccccCCccccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCcee
Confidence            99999999  7  9999999999988777777777899999999999988899999999998877 6532   1111222


Q ss_pred             cchH---HHHHHhhcCC-CCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH-HHcCCccccCCCcc-CC
Q 015729          232 FDWK---DYIKFYNLGT-FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAV-EAWGLKNCTQKEEW-FS  305 (401)
Q Consensus       232 ~~~~---~~~~~~~~g~-~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L-~~~g~~~~~~~~~~-~~  305 (401)
                      .+..   .....+..+. .+.++++...++++.++++.+.+.++++..++++++++++.+.| +++|+++..+.+.. ..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~  315 (385)
T 2bkw_A          236 SSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSA  315 (385)
T ss_dssp             TCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBC
T ss_pred             ecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhcCceecccCcccccC
Confidence            2221   1222333332 22356888888888899998877778889999999999999999 77787766432221 24


Q ss_pred             ceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC-CCCcEEEEe-ecc---cCCHHHHHHHHHHHHHHHHhcC
Q 015729          306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK-VAGKVFRIG-HLG---HLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       306 ~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~-~~~~~~Ri~-~~~---~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      +.++++.+++   ..++.+.|.++ ||.+.++... ...+++||+ +..   .++++|+++++++|+++++++|
T Consensus       316 ~~~~~~~~~~---~~~~~~~l~~~-gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~~~  385 (385)
T 2bkw_A          316 HGLTAVYVAD---PPDVIAFLKSH-GVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQRKK  385 (385)
T ss_dssp             SSCEEEECSC---HHHHHHHHHHT-TEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC--
T ss_pred             CceEEEecCC---HHHHHHHHHHC-CeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHhcC
Confidence            5678888853   67899999765 9999988642 235689998 432   4699999999999999886543

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=100.00  E-value=3.4e-39  Score=303.74  Aligned_cols=356  Identities=20%  Similarity=0.295  Sum_probs=283.7

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCCCccHH-HHHHHHHHHHHHHhcCCC-CceEEecCChhHHHHHHHhccCCCCCe
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVP-ALTKTLLEDIKKIFKTTS-GTPFLIPTTGTGAWESALTNTLSPGDR   86 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~l~~~la~~~g~~~-~~~i~~~~g~t~a~~~~~~~~~~~gd~   86 (401)
                      +.++|++||...++++++++.+... ++.+.+. +...++++.+++++|.+. .+.+++++|+++|+..++.+++++||+
T Consensus         4 ~~~~~~~gp~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~   82 (366)
T 1m32_A            4 NYLLLTPGPLTTSRTVKEAMLFDSC-TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDK   82 (366)
T ss_dssp             -CEECSSSSCCCCHHHHHTTCCCCC-TTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCC
T ss_pred             ccccccCCCcCCCHHHHHHHhhhhc-CCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhcCCCCe
Confidence            4689999999999999999998643 3333334 678899999999999432 246999999999999999998999999


Q ss_pred             EEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhc
Q 015729           87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY  166 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~  166 (401)
                      |+++.+.+|+..+...++..|++++.++.+.++.+|++++++++++++  +++++++++++||||.+.|+++|.++|++ 
T Consensus        83 vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~--~~~~v~~~~~~nptG~~~~l~~i~~l~~~-  159 (366)
T 1m32_A           83 VLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADP--TISHIAMVHSETTTGMLNPIDEVGALAHR-  159 (366)
T ss_dssp             EEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCT--TCCEEEEESEETTTTEECCHHHHHHHHHH-
T ss_pred             EEEEeCCCccHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCC--CeEEEEEecccCCcceecCHHHHHHHHHH-
Confidence            988876566544456677789999999998887899999999998632  57899999999999999999999999999 


Q ss_pred             CCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcC-C
Q 015729          167 RHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG-T  245 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~  245 (401)
                       +|+++|+|++|+.+..+++....++|++++|.||+++++.|+|++++++++.+.+.... ...++++......+... .
T Consensus       160 -~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  237 (366)
T 1m32_A          160 -YGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHS-RSLSLDLYAQWRCMEDNHG  237 (366)
T ss_dssp             -HTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCC-SCSTTCHHHHHHHHHHTTT
T ss_pred             -cCCEEEEECCccccCcCccccccCccEEEecCcccccCCCceEEEEECHHHHHhhcCCC-CCccccHHHHHhhhcccCC
Confidence             99999999999988777776667799999999999978889999999999887765421 12223322222211110 1


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC--CCCHHHH
Q 015729          246 FWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS--HINSSEI  322 (401)
Q Consensus       246 ~~~~~~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l  322 (401)
                      ...++++...++++.++++.+.+.| +++..++++++++++.+.|+++|+++..+.. ...+.++++.+++  +.+..++
T Consensus       238 ~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  316 (366)
T 1m32_A          238 KWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDE-LHSPIITAFYSPEDPQYRFSEF  316 (366)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGG-GBCSSEEEEECCCCTTCCHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCCCeeccCch-hcCceEEEEEcCccCCCCHHHH
Confidence            1234688888888999999887777 8889999999999999999988877654321 1355688888875  6678899


Q ss_pred             HHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          323 VRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       323 ~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .+.|.++ ||.+.++..+ .++++|+++...++++|+++++++|+++++++
T Consensus       317 ~~~l~~~-gi~v~~~~~~-~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  365 (366)
T 1m32_A          317 YRRLKEQ-GFVIYPGKVS-QSDCFRIGNIGEVYAADITALLTAIRTAMYWT  365 (366)
T ss_dssp             HHHHHHT-TEECEECCCS-SSCEEEEECCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHC-CEEEECCcCC-CCCEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Confidence            9999877 9999888654 46789999888889999999999999987654

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=100.00  E-value=3e-41  Score=317.33  Aligned_cols=340  Identities=13%  Similarity=0.140  Sum_probs=265.2

Q ss_pred             CcccccCCCcCChHHHHHHHccCc------------CCCCCccHHHHHHHHHHHHHHHhcCCCCceEEe-cCChhHHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNN------------EDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLI-PTTGTGAWES   75 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~-~~g~t~a~~~   75 (401)
                      +.|||.|||++++++|++++..+.            ..|++..+.+.++++|+.+++++|.++++.++| ++|+|++++.
T Consensus        27 ~~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~  106 (386)
T 3qm2_A           27 QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAG  106 (386)
T ss_dssp             CCEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHH
T ss_pred             cCccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHH
Confidence            689999999999999999998865            234455667788999999999999976556888 6999999999


Q ss_pred             HHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCC--CCCC-CChHHHHHHHhccCCCCceEEEEEecCCCccc
Q 015729           76 ALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD--WGEG-AKLDVLASKLAADTAHTIKAICIVHNETATGV  152 (401)
Q Consensus        76 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~-~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~  152 (401)
                      ++.+++++||+++++..+++++.|...++..| +++.++.+  ..+. +++++++.+++    +++++|++++.+|.+|.
T Consensus       107 ai~~l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~----~~t~lV~~~h~et~tG~  181 (386)
T 3qm2_A          107 VPLNLLGDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLS----DNAAYLHYCPNETIDGI  181 (386)
T ss_dssp             HHHHHCTTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCC----TTCSCEEECSEETTTTE
T ss_pred             HHHhccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcC----CCCcEEEEECCcCCcCE
Confidence            99999999999998888899988888888889 89999988  4443 67888877666    46789999999999999


Q ss_pred             c-cchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccc
Q 015729          153 T-NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF  231 (401)
Q Consensus       153 ~-~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~  231 (401)
                      + .|+++|.       +|+++++|+++++|..++|+++++  ++++|+||++ ||+|+|++++++++++++.+...  .+
T Consensus       182 ~i~pi~~i~-------~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~l-GP~G~g~l~v~~~~~~~~~~~~p--~~  249 (386)
T 3qm2_A          182 AIDETPDFG-------PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNI-GPAGLTLVIVREDLLGKAHESCP--SI  249 (386)
T ss_dssp             ECCCCCCCC-------TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTT-CCTTEEEEEEEGGGCSCCCTTSC--GG
T ss_pred             ecCchhhhc-------CCCEEEEEcccccCCCCCCccccC--EEEEeccccc-CCCccEEEEECHHHHhhhcccCC--cH
Confidence            6 8888874       689999999999999999999876  5779999999 69999999999998776654322  12


Q ss_pred             cchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEE
Q 015729          232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA  310 (401)
Q Consensus       232 ~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~  310 (401)
                      .++....   +.+ ..++|+++..++++.+|++++.+. |++++.++.+++++++++.|+++|+.....++..+++.++.
T Consensus       250 ~~~~~~~---~~~-~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~  325 (386)
T 3qm2_A          250 LDYTVLN---DND-SMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVP  325 (386)
T ss_dssp             GCHHHHH---HC--------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEE
T ss_pred             HHHHHHh---hcC-CCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEE
Confidence            3333222   222 224578999999999999999998 79999999999999999999988652221123345667888


Q ss_pred             EEcCC-CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          311 VIVPS-HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       311 ~~~~~-~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      |.+|+ +.+ .++...|.++ ||.++.|..+.  +.+|+|++.++|++|||+++++|+++.++.
T Consensus       326 f~~~~~~~~-~~~~~~L~~~-gI~~~~g~~~~--~~iRiS~~~~~t~edId~l~~~l~~~~~~~  385 (386)
T 3qm2_A          326 FQLADNTLD-KVFLEESFAA-GLHALKGHRVV--GGMRASIYNAMPIEGVKALTDFMIDFERRH  385 (386)
T ss_dssp             EEESSGGGH-HHHHHHHHHT-TEECCBCCTTT--CSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             EECCCcccc-HHHHHHHHHC-CCEEeCCCCCc--CeEEEEcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            99874 344 5676777655 99988876543  349999999999999999999999998763

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=100.00  E-value=3.8e-39  Score=300.34  Aligned_cols=337  Identities=15%  Similarity=0.128  Sum_probs=274.1

Q ss_pred             CCCcccccCCCcCChHHHHHHHccCcC------------CCCCccHHHHHHHHHHHHHHHhcCCCCceEEe-cCChhHHH
Q 015729            7 PGKNHLFVPGPVHIPDQVIRAMNRNNE------------DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLI-PTTGTGAW   73 (401)
Q Consensus         7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~-~~g~t~a~   73 (401)
                      +.+.|||.|||++++++|++++.+...            .|++..+.+.+.++|+.+++++|.+++++++| |+|+|+++
T Consensus         3 ~~~~~~f~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~   82 (361)
T 3m5u_A            3 AMRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQF   82 (361)
T ss_dssp             -CCCEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred             ccceEeecCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHH
Confidence            468899999999999999999998654            45566778899999999999999976656888 99999999


Q ss_pred             HHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCC--CChHHHHHHHhccCCCCceEEEEEecCCCcc
Q 015729           74 ESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG--AKLDVLASKLAADTAHTIKAICIVHNETATG  151 (401)
Q Consensus        74 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~--~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG  151 (401)
                      +.++.+++ +||+++++..+++++.|...++..|++++.++.+.++.  .++++ +  ++    ++++++.++|.+|.+|
T Consensus        83 n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~----~~t~lv~~~~~e~~tG  154 (361)
T 3m5u_A           83 AMIPMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIPRV-E--FS----DNADYAYICSNNTIYG  154 (361)
T ss_dssp             HHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCCCC-C--CC----TTSSEEEEESEETTTT
T ss_pred             HHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCChh-h--cC----CCCCEEEEeCCCCCcc
Confidence            99999888 88988777777888888788888999999999988764  56766 4  65    3569999999999999


Q ss_pred             cccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccc
Q 015729          152 VTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF  231 (401)
Q Consensus       152 ~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~  231 (401)
                      .+.|.     ++ +  +|+++++|+++++|..++|+++  +|++++|+||++ ||+|+|++++++++++++.+...+ .+
T Consensus       155 ~~~~~-----i~-~--~~~~~~vD~~q~~g~~~id~~~--~d~~~~s~~K~~-gp~G~g~l~~~~~~~~~~~~~~~p-~~  222 (361)
T 3m5u_A          155 TQYQN-----YP-K--TKTPLIVDASSDFFSRKVDFSN--IALFYGGVQKNA-GISGLSCIFIRKDMLERSKNKQIP-SM  222 (361)
T ss_dssp             EECSS-----CC-C--CSSCEEEECGGGTTSSCCCCTT--EEEEEEETTTTS-SCTTCEEEEEEHHHHHHHHTCCCC-GG
T ss_pred             eeCCc-----cc-c--cCCEEEEEcccccCCCCCCccc--CCEEEEechhcc-CCCccEEEEEcHHHHhhhcCCCCC-ce
Confidence            99762     34 3  5999999999999999999884  799999999999 699999999999998887652222 23


Q ss_pred             cchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHcC-C-ccccCCCccCCcee
Q 015729          232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWG-L-KNCTQKEEWFSDTV  308 (401)
Q Consensus       232 ~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~~~~~~~~~~~  308 (401)
                      .++....   +.+ ..++|+++..++++.+|++++.+. |++++.++.+++++++++.|++++ + ..... +..+++.+
T Consensus       223 ~~~~~~~---~~~-~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~-~~~rs~~i  297 (361)
T 3m5u_A          223 LNYLTHA---ENQ-SLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHAD-KKDRSLMN  297 (361)
T ss_dssp             GCHHHHH---HTT-TCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSC-GGGBCSSE
T ss_pred             eehHHHh---hcC-CCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCC-HHHcCCeE
Confidence            4433322   222 235789999999999999999998 899999999999999999999985 5 44332 23356678


Q ss_pred             EEEEcCC--CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          309 TAVIVPS--HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       309 ~~~~~~~--~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      +.|.+|+  +++ .++...|.++ ||.+..|....  +.+|+|++.++|++|+|+++++|+++.++
T Consensus       298 vsf~~~~~~~~~-~~~~~~L~~~-gI~~~~g~~~~--g~iRiS~~~~~t~edId~l~~al~~~~~~  359 (361)
T 3m5u_A          298 VSFNIAKNKDLE-PLFVKEAEEA-GMIGLKGHRIL--GGIRASIYNALNLDQVKTLCEFMKEFQGK  359 (361)
T ss_dssp             EEEEESSCTTHH-HHHHHHHHHT-TEECCBCCTTT--CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCchhhh-HHHHHHHHHC-CCEEecCCCcc--CeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence            8899875  233 4677777655 99988775543  35999999999999999999999998865

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=100.00  E-value=3.3e-39  Score=301.65  Aligned_cols=339  Identities=14%  Similarity=0.110  Sum_probs=274.5

Q ss_pred             cccCCCcCChHHHHHHHccCcC------------CCCCccHHHHHHHHHHHHHHHhcCCCCceEEe-cCChhHHHHHHHh
Q 015729           12 LFVPGPVHIPDQVIRAMNRNNE------------DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLI-PTTGTGAWESALT   78 (401)
Q Consensus        12 ~~~~~p~~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~-~~g~t~a~~~~~~   78 (401)
                      +..+.+.++|++|++++.+...            .|++..+.+.++++|+.+++++|.++++.++| ++|+|++++.++.
T Consensus        16 ~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~   95 (377)
T 3e77_A           16 ENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPL   95 (377)
T ss_dssp             CCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH
T ss_pred             ccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHH
Confidence            4567889999999999998553            45566788899999999999999976666888 6899999999999


Q ss_pred             ccCCC--CCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccch
Q 015729           79 NTLSP--GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL  156 (401)
Q Consensus        79 ~~~~~--gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l  156 (401)
                      +++.+  ||+++++..++++..|...++..|.+++.++.+.++..++++++..++    +++++|.+++.+|.+|.+.|+
T Consensus        96 ~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~----~~t~lV~~~h~et~tG~~~pi  171 (377)
T 3e77_A           96 NLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLN----PDASYVYYCANETVHGVEFDF  171 (377)
T ss_dssp             HHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCC----TTCSCEEEESEETTTTEECSS
T ss_pred             hccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCCCcCCCCChHHhccC----CCccEEEEeCccCchheEchh
Confidence            88765  899999999999988888888889887777777666677877765554    467999999999999999998


Q ss_pred             HHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHH
Q 015729          157 SKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKD  236 (401)
Q Consensus       157 ~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~  236 (401)
                           +|++  +|+++++|+++++|..++|+++++  ++++|+||++ ||+|+|++++++++++++.+...  .++++..
T Consensus       172 -----i~~~--~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~-gp~G~g~l~~~~~~l~~~~~~~p--~~~~~~~  239 (377)
T 3e77_A          172 -----IPDV--KGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNV-GSAGVTVVIVRDDLLGFALRECP--SVLEYKV  239 (377)
T ss_dssp             -----CCCC--TTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTT-SCTTCEEEEEETTSCSCCCTTSC--GGGCHHH
T ss_pred             -----hhcc--CCCEEEEEcccccCCCCCchhhcC--EEEEeccccc-CCCccEEEEEcHHHHhhccCCCC--chhhHHH
Confidence                 4777  999999999999999999999876  5889999999 79999999999998766654322  2344333


Q ss_pred             HHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcC
Q 015729          237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVP  314 (401)
Q Consensus       237 ~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~  314 (401)
                      ..   +.+ ...+||++..++++.+|++++.+. |++++.++.+++++++++.|+++ |+.+...++..+++.++.|.+|
T Consensus       240 ~~---~~~-~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~  315 (377)
T 3e77_A          240 QA---GNS-SLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIG  315 (377)
T ss_dssp             HH---TTT-TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEES
T ss_pred             Hh---hcC-CCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcC
Confidence            22   222 236789999999999999999998 79999999999999999999998 8775443344467777889985


Q ss_pred             CCCCH-----HHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          315 SHINS-----SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       315 ~~~~~-----~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      + ++.     ..+...|.++ ||.+++|...  .+.+|+|++.++|++|+|+++++|++++++.+
T Consensus       316 ~-~~~~~~~~~~~l~~l~~~-Gi~~~~g~~~--~g~iRiS~~~~~t~edId~l~~al~~~~~~~~  376 (377)
T 3e77_A          316 N-AKGDDALEKRFLDKALEL-NMLSLKGHRS--VGGIRASLYNAVTIEDVQKLAAFMKKFLEMHQ  376 (377)
T ss_dssp             S-TTCCHHHHHHHHHHHHHT-TEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred             C-CCCchhHHHHHHHHHHHC-CcEEeCCCCc--CCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            4 322     2455666554 9998887543  34599999999999999999999999988654

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=100.00  E-value=6e-37  Score=292.55  Aligned_cols=348  Identities=17%  Similarity=0.175  Sum_probs=275.1

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCC-----CCC-----ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNED-----YRS-----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~-----~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      ..|+..+.+.+.++.+++++.+....     +.+     +.......++++.+++++|.++++.+++++|+|+|+..++.
T Consensus        24 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~  103 (406)
T 1kmj_A           24 LAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVAN  103 (406)
T ss_dssp             CEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHH
T ss_pred             eEEecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHH
Confidence            57888888888899999988874421     111     12456788999999999998433459999999999999999


Q ss_pred             cc----CCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccc
Q 015729           79 NT----LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV  152 (401)
Q Consensus        79 ~~----~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~  152 (401)
                      ++    +++||+|+++.++|++..  +...++..|++++.++.+.++.+|++++++++++    ++++|++++++||||.
T Consensus       104 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~----~~~~v~~~~~~nptG~  179 (406)
T 1kmj_A          104 SWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDE----KTRLLAITHVSNVLGT  179 (406)
T ss_dssp             HTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCT----TEEEEEEESBCTTTCC
T ss_pred             HhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhcc----CCeEEEEeCCCccccC
Confidence            88    899999999999998864  5566778899999999988788999999999873    6799999999999999


Q ss_pred             ccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCcccc
Q 015729          153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF  232 (401)
Q Consensus       153 ~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~  232 (401)
                      +.|+++|.++|++  +|+++|+|++|+.|..+++....++|++++|.||++ |++|+|++++++++.+.+........+.
T Consensus       180 ~~~l~~i~~l~~~--~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~-g~~G~G~~~~~~~~~~~~~~~~~~~~~~  256 (406)
T 1kmj_A          180 ENPLAEMITLAHQ--HGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLY-GPTGIGILYVKEALLQEMPPWEGGGSMI  256 (406)
T ss_dssp             BCCHHHHHHHHHH--TTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTT-SCTTCEEEEECHHHHHHCCCSSCSTTSE
T ss_pred             cCCHHHHHHHHHH--cCCEEEEEchhhcCCCCCcccccCCCEEEEEchhcc-CCCCcEEEEEeHHHHhhcCCcccCCCce
Confidence            9999999999999  999999999999887666655567999999999988 6888999999999988876543221110


Q ss_pred             c---------hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 015729          233 D---------WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE  302 (401)
Q Consensus       233 ~---------~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~  302 (401)
                      +         +......+.     .++++...++++.++++.+.+.++++..++..++++++.+.|+++ |+++..+.  
T Consensus       257 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--  329 (406)
T 1kmj_A          257 ATVSLSEGTTWTKAPWRFE-----AGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ--  329 (406)
T ss_dssp             EEEETTTEEEECCTTGGGC-----CSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCT--
T ss_pred             eecccccccccCCCchhcc-----CCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC--
Confidence            0         000001111     335777777788788888877788889999999999999999987 77766532  


Q ss_pred             cCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--------CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--------VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~--------~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      . .+.++.+.++ +.+..++.+.|.++ ||.+.+|..+        ...+++||++...++++|+++++++|+++++.+
T Consensus       330 ~-~~~~~~~~~~-~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l  405 (406)
T 1kmj_A          330 N-RLGVIAFNLG-KHHAYDVGSFLDNY-GIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL  405 (406)
T ss_dssp             T-CCSEEEEEET-TCCHHHHHHHHHHT-TEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             C-cCCEEEEEEC-CCCHHHHHHHHhhC-CcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence            1 2345666774 45778898888766 9999887532        124789999988889999999999999998754

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=100.00  E-value=4.2e-37  Score=292.13  Aligned_cols=348  Identities=16%  Similarity=0.129  Sum_probs=274.1

Q ss_pred             CCCCCCCcccccCCCcCChHHHHHHHccCcCCC-----C---Cc-cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHH
Q 015729            3 YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDY-----R---SP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAW   73 (401)
Q Consensus         3 ~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~-----~---~~-~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~   73 (401)
                      |+..++..|+..+++.+.++.+++++.+.....     .   .+ .......++++.+++++|.++. ++++++|+++|+
T Consensus        11 f~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~t~a~   89 (390)
T 1elu_A           11 FPGLANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPN-TITITDNVTTGC   89 (390)
T ss_dssp             CGGGTTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGG-GEEEESSHHHHH
T ss_pred             cCCCCCeEEecCCccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHH-HEEEeCChHHHH
Confidence            444567889999888888888999888744221     0   11 1236788999999999998654 499999999999


Q ss_pred             HHHHhcc-CCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCC--CCCCCChHHHHHHHhccCCCCceEEEEEecCC
Q 015729           74 ESALTNT-LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNET  148 (401)
Q Consensus        74 ~~~~~~~-~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~--~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n  148 (401)
                      ..++.++ +++||+|+++.++|++..  +...++..|++++.++.+  .++.+|++++++.++    ++++++++++++|
T Consensus        90 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~n  165 (390)
T 1elu_A           90 DIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG----PKTRLVILSHLLW  165 (390)
T ss_dssp             HHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC----TTEEEEEEESBCT
T ss_pred             HHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcC----CCceEEEEecccc
Confidence            9999988 899999999999988875  445567789999999986  466789999999886    3679999999999


Q ss_pred             CcccccchHHHHHHhh----hcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhcc
Q 015729          149 ATGVTNNLSKVRKLLD----EYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKT  224 (401)
Q Consensus       149 ~tG~~~~l~~i~~l~~----~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~  224 (401)
                      |||.+.|+++|.++|+    +  +|+++|+|++|+.|..+.+....++|++++|.||++.++.|+|++++++++.+.+..
T Consensus       166 ptG~~~~~~~i~~l~~~~~~~--~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~  243 (390)
T 1elu_A          166 NTGQVLPLAEIMAVCRRHQGN--YPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINP  243 (390)
T ss_dssp             TTCCBCCHHHHHHHHHHCCSS--SCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCC
T ss_pred             CCceecCHHHHHHHHhhhhhh--cCcEEEEEcccccCCcCCChhhcCCCEEEccccccccCCCceEEEEECHHhHhhcCC
Confidence            9999999999999999    8  999999999999888777766678999999999988888899999999988777654


Q ss_pred             CCCCccc---------cchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHc-C
Q 015729          225 AKSVRVF---------FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAW-G  293 (401)
Q Consensus       225 ~~~~~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~-g  293 (401)
                      .......         +.+.+....+     ..++++...++++.++++.+...+ +++..++++++++++.+.|+++ |
T Consensus       244 ~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  318 (390)
T 1elu_A          244 TYVGWRSITYGAKGEPTGWAEGGKRF-----EVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPH  318 (390)
T ss_dssp             CSCCTTTEEECTTSCEEEECSGGGGG-----CCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             ccccCCcccccccCcccccccchHhh-----CCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3211000         0000000111     234577777888888999887766 8899999999999999999997 8


Q ss_pred             CccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          294 LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      +++..+.+  ..+.++.+.++.+.+..++.+.|.++ ||.+.++.   ..+++||++....+++|+++++++|++
T Consensus       319 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~---~~~~iRis~~~~~~~~~i~~~~~~l~~  387 (390)
T 1elu_A          319 VHCLATSA--PQAGLVSFTVDSPLGHRAIVQKLEEQ-RIYLRTIA---DPDCIRACCHYITDEEEINHLLARLAD  387 (390)
T ss_dssp             EEESCSSC--CSSSEEEEEECSSSCHHHHHHHHHHT-TEECEEET---TTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred             cEEecCcc--ccccEEEEEcCCCCCHHHHHHHHHHC-CEEEEecC---CCCeEEEecccCCCHHHHHHHHHHHHh
Confidence            77764321  23346667886666788999999765 99998875   257899998777899999999999865

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=100.00  E-value=3.7e-37  Score=291.62  Aligned_cols=329  Identities=20%  Similarity=0.288  Sum_probs=265.5

Q ss_pred             CCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCC--cE
Q 015729           33 EDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNF--NV  110 (401)
Q Consensus        33 ~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~--~~  110 (401)
                      ..|++..+.+.+.++++.+++++|.+  +.+++++|||+|++.++. .+.+||+|+++.++|++..+...++..|+  ++
T Consensus        26 ~~h~~~~~~~~~~~~~~~l~~~~~~~--~~v~~~~sgt~a~~~~~~-~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~  102 (379)
T 3ke3_A           26 LNHMSKAFQEVMNDLLSNLKTVYNAE--AAVIIPGSGTYGMEAVAR-QLTIDEDCLIIRNGWFSYRWTQILEKGKFAKSS  102 (379)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHHHHTCS--EEEEEESCHHHHHHHHHH-HHCTTCEEEEEECSHHHHHHHHHHHHHCCSSEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhCCC--CEEEEcCChhHHHHHHHH-hCCCCCeEEEEeCCchhHHHHHHHHHhCCCCce
Confidence            44667778889999999999999987  458899999999999874 46799999999999998777667776764  77


Q ss_pred             EEEeCCCC---------CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEEEEeccc
Q 015729          111 DVVESDWG---------EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVS  178 (401)
Q Consensus       111 ~~v~~~~~---------~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li~D~a~  178 (401)
                      +.++.+..         ..+|++++++++++   ++++++++++++|++|.+.|   +++|.++|++  +|+++|+|+++
T Consensus       103 ~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~--~~~~li~D~~~  177 (379)
T 3ke3_A          103 TVLTAERTEDTEAPKPFAPVDIETAVAKIKE---DKSAIVYAPHVETSSGIILSEEYIKALSEAVHS--VGGLLVIDCIA  177 (379)
T ss_dssp             EEEECEESSCCSSCCCEECCCHHHHHHHHHH---HTCSEEEEESEETTTTEECCHHHHHHHHHHHHH--TTCEEEEECTT
T ss_pred             EEEeccccccccccCCCCCCCHHHHHHHHhh---cCCcEEEEEeecCCCceeCCHHHHHHHHHHHHH--cCCEEEEEecc
Confidence            77876431         25799999999964   24689999999999999999   9999999999  99999999999


Q ss_pred             ccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHH---HHHhhcC-CCCCCCCcHH
Q 015729          179 SICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDY---IKFYNLG-TFWPYTPSIQ  254 (401)
Q Consensus       179 ~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-~~~~~~~~~~  254 (401)
                      + |..+++...+++|++++|+||++++++|+|++++++++++.+.+.....+++++..+   ...++.| +.+.+|+++.
T Consensus       178 ~-g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~  256 (379)
T 3ke3_A          178 S-GCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTD  256 (379)
T ss_dssp             C-TTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHH
T ss_pred             c-CCccccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHH
Confidence            9 888888877899999999999998888999999999999988765555555554433   3445554 2345689999


Q ss_pred             HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEE
Q 015729          255 LLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSL  334 (401)
Q Consensus       255 ~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v  334 (401)
                      .++++.++++.+.+.|++++.++.+++++++++.|+++|+++..+. ...++.+..+..+ + ....+.+.|.++ ||.+
T Consensus       257 ~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~-~~~~~~i~~~~~~-~-~~~~~~~~L~~~-Gi~v  332 (379)
T 3ke3_A          257 SLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAE-GFEAPGVVVSYTE-R-DDMHKGSAFAEA-GLQI  332 (379)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCT-TCBCSSEEEEECS-C-HHHHSSHHHHHT-TCCC
T ss_pred             HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCc-cccCceEEEEccC-C-cchHHHHHHHHC-CeEE
Confidence            9999999999999888999999999999999999999998886543 2345556655553 2 112235667655 9999


Q ss_pred             ccCCCC-----CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          335 GLGLNK-----VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       335 ~~g~~~-----~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      .+|..+     ..++.+||++..++|++||++++++|++++++++
T Consensus       333 ~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~  377 (379)
T 3ke3_A          333 AAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL  377 (379)
T ss_dssp             EECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             eCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence            888643     2267899999988999999999999999998753

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=100.00  E-value=6.1e-37  Score=288.36  Aligned_cols=340  Identities=17%  Similarity=0.209  Sum_probs=262.0

Q ss_pred             CCCCcccccCCCcCChHHHHHHHccCcC------------CCCCccHHHHHHHHHHHHHHHhcCCCC-ceEEecCChhHH
Q 015729            6 APGKNHLFVPGPVHIPDQVIRAMNRNNE------------DYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGTGA   72 (401)
Q Consensus         6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~l~~~la~~~g~~~~-~~i~~~~g~t~a   72 (401)
                      ++++.|++.+||.++++.|++++.+...            .++++...+..+++++.+++++|.++. +.+++++|+|+|
T Consensus         1 ~~~~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a   80 (362)
T 2c0r_A            1 MSERAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQ   80 (362)
T ss_dssp             -CCCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHH
T ss_pred             CCcceeeccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHH
Confidence            4568999999999999999999988542            233444566788999999999999754 335678999999


Q ss_pred             HHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCC--CC--CCChHHHHHHHhccCCCCceEEEEEecCC
Q 015729           73 WESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GE--GAKLDVLASKLAADTAHTIKAICIVHNET  148 (401)
Q Consensus        73 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~--~~d~~~le~~~~~~~~~~~~~i~~~~~~n  148 (401)
                      +..++.+++++||+|+++.+++++..+...++..| +++.++.+.  +.  .+|+++++  ++    ++++++++++++|
T Consensus        81 ~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~----~~t~~v~~~~~~n  153 (362)
T 2c0r_A           81 FAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQ----DNAAYLHLTSNET  153 (362)
T ss_dssp             HHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CC----TTEEEEEEESEET
T ss_pred             HHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cC----CCcCEEEEeCCcC
Confidence            99999999999999999988888765556677789 999998762  22  34665554  43    4689999999999


Q ss_pred             Ccccc-cchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCC
Q 015729          149 ATGVT-NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS  227 (401)
Q Consensus       149 ~tG~~-~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~  227 (401)
                      |||.+ .|+++|        +|+++|+|++|+.+..+.+..+  .|++++|+||++ |++|+|++++++++.+.+.....
T Consensus       154 ~tG~~~~~l~~i--------~~~~vivD~a~~~~~~~~~~~~--~d~~~~s~~K~~-g~~G~G~l~~~~~~~~~l~~~~~  222 (362)
T 2c0r_A          154 IEGAQFKAFPDT--------GSVPLIGDMSSDILSRPFDLNQ--FGLVYAGAQKNL-GPSGVTVVIVREDLVAESPKHLP  222 (362)
T ss_dssp             TTTEECSSCCCC--------TTSCEEEECTTTTTSSCCCGGG--CSEEEEETTTTT-CCSSCEEEEEEGGGSSSCCTTSC
T ss_pred             ccceeccccccc--------CCCEEEEEChhhccCCccchhH--CcEEEEeccccc-cCcCcEEEEEcHHHHhhccccCc
Confidence            99996 566665        6899999999999887766654  389999999999 58899999999988665543211


Q ss_pred             CccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHcC-C-ccccCCCccC
Q 015729          228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWG-L-KNCTQKEEWF  304 (401)
Q Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~~~~~~~  304 (401)
                        .++++.....   .+ ...++++...++++.++++.+.+. ++++.+++++++++++.+.|+++| + ++..+ +...
T Consensus       223 --~~~~~~~~~~---~~-~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~  295 (362)
T 2c0r_A          223 --TMLRYDTYVK---NN-SLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVD-VDSR  295 (362)
T ss_dssp             --GGGCHHHHHH---TT-TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSC-GGGB
T ss_pred             --hHHhHHHHhh---cc-CcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCC-hHHc
Confidence              3333332221   11 234578888889999999987776 688999999999999999999886 6 65432 1223


Q ss_pred             CceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          305 SDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       305 ~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +..++++.++++.+..++++.|.++ ||.+.+|...  .+.+||++..+++++|+++++++|++++++.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~L~~~-gi~~~~g~~~--~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~  361 (362)
T 2c0r_A          296 SDMNITFRLASEELEKEFVKASEQE-GFVGLKGHRS--VGGLRASIYNAVPYESCEALVQFMEHFKRSR  361 (362)
T ss_dssp             CSSEEEEECSCHHHHHHHHHHHHHT-TEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCcchHHHHHHHHHHC-CCeeccCCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            4456788886545677899998766 9988777543  3569999988889999999999999988653

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=100.00  E-value=4.1e-36  Score=288.17  Aligned_cols=353  Identities=17%  Similarity=0.163  Sum_probs=274.2

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCC-----CCC---cc--HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNED-----YRS---PA--VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~---~~--~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      ..|+..+.|.+.++.+++++.+....     +.+   +.  ......++++.+++++|..+++.+++++|+|+|+..++.
T Consensus        29 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~  108 (420)
T 1t3i_A           29 LVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAY  108 (420)
T ss_dssp             CEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHH
T ss_pred             eEEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHH
Confidence            46777777778889999988874422     111   21  146688999999999998333459999999999999999


Q ss_pred             cc----CCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccc
Q 015729           79 NT----LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV  152 (401)
Q Consensus        79 ~~----~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~  152 (401)
                      ++    +++||+|+++.++|++..  +...++..|++++.++.+.++.+|++++++++++    ++++|++++++||||.
T Consensus       109 ~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~----~~~~v~~~~~~nptG~  184 (420)
T 1t3i_A          109 SWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSE----KTKLVTVVHISNTLGC  184 (420)
T ss_dssp             HTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCT----TEEEEEEESBCTTTCB
T ss_pred             HhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCC----CceEEEEeCCcccccC
Confidence            88    899999999999999864  4566778899999999987788999999999873    6799999999999999


Q ss_pred             ccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCcccc
Q 015729          153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF  232 (401)
Q Consensus       153 ~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~  232 (401)
                      +.|+++|.++|++  +|+++|+|++|+.+..+++....++|++++|.||.+ ++.|+|++++++++.+++........+.
T Consensus       185 ~~~l~~i~~l~~~--~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~-~~~g~G~~~~~~~~~~~~~~~~~~~~~~  261 (420)
T 1t3i_A          185 VNPAEEIAQLAHQ--AGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMC-APTGIGFLYGKEEILEAMPPFFGGGEMI  261 (420)
T ss_dssp             BCCHHHHHHHHHH--TTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTT-SCTTCEEEEECHHHHHHSCCCSCSTTSE
T ss_pred             cCCHHHHHHHHHH--cCCEEEEEhhhccCCccCchhhcCCCEEEEehhhhc-CCCceEEEEEchHHHhhcCceecCCCcc
Confidence            9999999999999  999999999999887766666667999999999955 6788999999999988876543221100


Q ss_pred             c--------hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCcc
Q 015729          233 D--------WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEW  303 (401)
Q Consensus       233 ~--------~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~  303 (401)
                      +        +......+     ..++++...++++.++++.+.+.++++..++++++++++.+.|+++ |+++..+....
T Consensus       262 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~  336 (420)
T 1t3i_A          262 AEVFFDHFTTGELPHKF-----EAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKH  336 (420)
T ss_dssp             EEECSSCEEECCTTGGG-----CCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGG
T ss_pred             ccccccccCCCCchhhc-----cCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccc
Confidence            0        00000011     1235777777777778888877778899999999999999999987 87776543110


Q ss_pred             -CCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC-------CC-CcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          304 -FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK-------VA-GKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       304 -~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~-------~~-~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                       ..+.++.+.++ +.+..++.+.|.++ ||.+.++..+       .. ++++||++...++++|+++++++|+++++++.
T Consensus       337 ~~~~~~~~~~~~-~~~~~~~~~~l~~~-gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~  414 (420)
T 1t3i_A          337 GDRAALASFNVA-GLHASDVATMVDQD-GIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFFS  414 (420)
T ss_dssp             SCBCSEEEEEET-TBCHHHHHHHHHTT-TEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC
T ss_pred             cccCCEEEEEEC-CCCHHHHHHHHHHC-CeEEeeccccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence             12346667775 35678898888765 9999988432       11 56899999888899999999999999998764


Q ss_pred             C
Q 015729          375 Y  375 (401)
Q Consensus       375 ~  375 (401)
                      .
T Consensus       415 ~  415 (420)
T 1t3i_A          415 D  415 (420)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=100.00  E-value=3.5e-36  Score=289.08  Aligned_cols=347  Identities=14%  Similarity=0.119  Sum_probs=273.4

Q ss_pred             CCCCCCCcccccCCCcCChHHHHHHHccCcC--CCC------C----ccHHHHHHHHHHHHHHHhcCCCCceEEecCChh
Q 015729            3 YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNE--DYR------S----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGT   70 (401)
Q Consensus         3 ~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~--~~~------~----~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t   70 (401)
                      ....++..|++.+++.+.++.+++++.+...  ...      .    +...+...++++.+++++|.++. .+++++|++
T Consensus        17 ~~~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~~ggt   95 (423)
T 3lvm_A           17 YRAMKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-EIVFTSGAT   95 (423)
T ss_dssp             ---CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEESSHH
T ss_pred             ccccCCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCC-eEEEeCChH
Confidence            4456778999999999999999999998665  211      1    12345678999999999998754 499999999


Q ss_pred             HHHHHHHhccC----CCCCeEEEEcCCcchHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEe
Q 015729           71 GAWESALTNTL----SPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVH  145 (401)
Q Consensus        71 ~a~~~~~~~~~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~  145 (401)
                      +|+..++.++.    ++||+|+++.++|++.. .....+..|++++.++.+.++.+|++++++++++    +++++++++
T Consensus        96 ~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~~~v~~~~  171 (423)
T 3lvm_A           96 ESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRD----DTILVSIMH  171 (423)
T ss_dssp             HHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCT----TEEEEECCS
T ss_pred             HHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCC----CcEEEEEeC
Confidence            99999988766    37999999999988875 2233366799999999998888999999999974    579999999


Q ss_pred             cCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccC
Q 015729          146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTA  225 (401)
Q Consensus       146 ~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~  225 (401)
                      ++||||.+.|+++|.++|++  +|++||+|++|+.+..+++....++|++++|+||++ |+.|+|+++++++..+.+...
T Consensus       172 ~~nptG~~~~l~~i~~l~~~--~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~-g~~g~G~~~~~~~~~~~~~~~  248 (423)
T 3lvm_A          172 VNNEIGVVQDIAAIGEMCRA--RGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIY-GPKGIGALYVRRKPRVRIEAQ  248 (423)
T ss_dssp             BCTTTCBBCCHHHHHHHHHH--HTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTT-SCSSCEEEEECBTTBCCCCCS
T ss_pred             CCCCCccccCHHHHHHHHHH--cCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhc-CCCCeEEEEEeccccCCCCcc
Confidence            99999999999999999999  999999999999888777777788999999999965 678899999998865554432


Q ss_pred             CCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccC
Q 015729          226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWF  304 (401)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~  304 (401)
                      .......           .....++++...++++.++++.+... +++..+++.++++++.+.|+++ |+++..+... .
T Consensus       249 ~~~~~~~-----------~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~  315 (423)
T 3lvm_A          249 MHGGGHE-----------RGMRSGTLPVHQIVGMGEAYRIAKEE-MATEMERLRGLRNRLWNGIKDIEEVYLNGDLEH-G  315 (423)
T ss_dssp             SCSSCTT-----------TTTCCSCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTT-B
T ss_pred             ccCCccc-----------ccccCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccc-c
Confidence            2111000           01224467888888888888877664 7889999999999999999887 8877654332 3


Q ss_pred             CceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCC-------------------CcEEEEeecccCCHHHHHHHHHH
Q 015729          305 SDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVA-------------------GKVFRIGHLGHLNELQLLGCLAG  365 (401)
Q Consensus       305 ~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~-------------------~~~~Ri~~~~~~~~~di~~~~~~  365 (401)
                      .+.++.+.+ .+.+..++.+.|.+   |.+.+|..+..                   ++++||++...++++|+++++++
T Consensus       316 ~~~~~~~~~-~~~~~~~l~~~l~~---i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~  391 (423)
T 3lvm_A          316 APNILNVSF-NYVEGESLIMALKD---LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIEL  391 (423)
T ss_dssp             CTTEEEEEE-TTSCHHHHHHHTTT---EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHH
T ss_pred             CCCeEEEEe-CCCCHHHHHHHHhh---heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHH
Confidence            345666777 55678888888864   78877744222                   36899999888899999999999


Q ss_pred             HHHHHHhcC
Q 015729          366 VEMILKDVG  374 (401)
Q Consensus       366 i~~~l~~~~  374 (401)
                      |+++++++.
T Consensus       392 l~~~~~~~~  400 (423)
T 3lvm_A          392 VRKSIGRLR  400 (423)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999998763

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=100.00  E-value=2.6e-36  Score=285.57  Aligned_cols=338  Identities=13%  Similarity=0.108  Sum_probs=265.8

Q ss_pred             cccccCCCcCChHHHHHHHccCcCCC-----CC----ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNEDY-----RS----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT   80 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~~-----~~----~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~   80 (401)
                      .|++.+++.++++.+++++.+.....     ..    ....+...++++.+++++|.++ +++++++|+++|+..++.++
T Consensus         2 iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~~~g~~~a~~~~~~~~   80 (382)
T 4hvk_A            2 AYFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGG-GTVVFTSGATEANNLAIIGY   80 (382)
T ss_dssp             CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTT-EEEEEESSHHHHHHHHHHHH
T ss_pred             EeecCCCcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCc-CeEEEECCchHHHHHHHHHh
Confidence            57888888899999999888743221     11    2235668899999999999875 45999999999999999887


Q ss_pred             C----CCCCeEEEEcCCcchHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc
Q 015729           81 L----SPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN  155 (401)
Q Consensus        81 ~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~  155 (401)
                      .    ++||+|+++.++|+++. ....++..|++++.++.+.++.+|++++++++++    +++++++++++||||.+.|
T Consensus        81 ~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~~~v~~~~~~nptG~~~~  156 (382)
T 4hvk_A           81 AMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD----DTILVSVQHANNEIGTIQP  156 (382)
T ss_dssp             HHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT----TEEEEECCSBCTTTCBBCC
T ss_pred             hhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc----CceEEEEECCCCCceeeCC
Confidence            6    89999999999988876 2344566799999999998888999999999974    5699999999999999999


Q ss_pred             hHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchH
Q 015729          156 LSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK  235 (401)
Q Consensus       156 l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~  235 (401)
                      +++|.++|++  +|+ +|+|++|+.+..+++....++|++++|.||++ |+.|+|+++++++.  .+.........    
T Consensus       157 ~~~i~~l~~~--~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~-g~~g~g~~~~~~~~--~~~~~~~~~~~----  226 (382)
T 4hvk_A          157 VEEISEVLAG--KAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIY-GPKGVGALWIRKEA--KLQPVILGGGQ----  226 (382)
T ss_dssp             HHHHHHHHSS--SSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGT-SCTTCEEEEEETTC--CCCCSSCSSCT----
T ss_pred             HHHHHHHHHH--cCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhc-CCCceEEEEEcCcc--CcCcccccCCC----
Confidence            9999999999  999 99999999888777776678999999999965 68889999998774  22221111000    


Q ss_pred             HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcC
Q 015729          236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVP  314 (401)
Q Consensus       236 ~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~  314 (401)
                             ...+..++++...++++.++++... .++++..++.+++++++.+.|+++ |+++..+... ..+.++.+.++
T Consensus       227 -------~~~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~  297 (382)
T 4hvk_A          227 -------ENGLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEK-RLPNNVNVRFS  297 (382)
T ss_dssp             -------GGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSS-BCTTEEEEEET
T ss_pred             -------cCccccCCcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccc-cCCCEEEEEEC
Confidence                   0112244678888888888888654 367889999999999999999987 7776654322 33446777774


Q ss_pred             CCCCHHHHHHHHHhhCCeEEccCCCCCC-------------------CcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          315 SHINSSEIVRRAWQRYNLSLGLGLNKVA-------------------GKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       315 ~~~~~~~l~~~L~~~~~i~v~~g~~~~~-------------------~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                       +.+..++.+.|.++ ||.+.+|..+..                   .+++||++...++++|+++++++|+++++++
T Consensus       298 -~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~  373 (382)
T 4hvk_A          298 -YIEGESIVLSLDMA-GIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERL  373 (382)
T ss_dssp             -TCCHHHHHHHHHHT-TCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHC-CEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence             56788999999766 999988743221                   4689999988889999999999999998765

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=100.00  E-value=7.7e-36  Score=282.75  Aligned_cols=340  Identities=16%  Similarity=0.138  Sum_probs=262.9

Q ss_pred             cccccCCCcCChHHHHHHHccCcCCCC---------CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNEDYR---------SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT   80 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~---------~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~   80 (401)
                      .||+.++..+.++.+++++.+......         ++.......++++.+++++|.++. .+++++|+++|+..++.++
T Consensus         3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~t~a~~~~~~~~   81 (384)
T 1eg5_A            3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS-EIFFTSCATESINWILKTV   81 (384)
T ss_dssp             EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGG-GEEEESCHHHHHHHHHHHH
T ss_pred             EEEecCccCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCC-eEEEECCHHHHHHHHHHhh
Confidence            788888888999999999887543210         123456688999999999998654 4999999999999999887


Q ss_pred             C----CCCCeEEEEcCCcchHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc
Q 015729           81 L----SPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN  155 (401)
Q Consensus        81 ~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~  155 (401)
                      .    ++||+|+++.++|++.. ....++..|++++.++.+.++.+|++++++++++    +++++++++++||||.+.|
T Consensus        82 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~~~v~~~~~~nptG~~~~  157 (384)
T 1eg5_A           82 AETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE----DTFLVSIMAANNEVGTIQP  157 (384)
T ss_dssp             HHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT----TEEEEEEESBCTTTCBBCC
T ss_pred             hhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC----CCeEEEEECCCCCcccccC
Confidence            6    79999999999888765 2334467899999999988888999999999873    6799999999999999999


Q ss_pred             hHHHHHHhhhcCCC--cEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccc
Q 015729          156 LSKVRKLLDEYRHP--ALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD  233 (401)
Q Consensus       156 l~~i~~l~~~~~~~--~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~  233 (401)
                      +++|.++|++  +|  ++||+|++|+++..+++....++|++++|.||++ +++|+|+++++++.  .+....... .. 
T Consensus       158 ~~~i~~l~~~--~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~-g~~G~G~~~~~~~~--~~~~~~~~~-~~-  230 (384)
T 1eg5_A          158 VEDVTRIVKK--KNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFH-GPKGVGITYIRKGV--PIRPLIHGG-GQ-  230 (384)
T ss_dssp             HHHHHHHHHH--HCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGT-SCTTCEEEEECTTS--CCCCSBCSS-CT-
T ss_pred             HHHHHHHHHh--cCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhc-CCCceEEEEEcCCC--ccccccccC-cc-
Confidence            9999999999  88  9999999999877666666667999999999975 67789999998874  112110000 00 


Q ss_pred             hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEc
Q 015729          234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV  313 (401)
Q Consensus       234 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~  313 (401)
                               ...+..++++...++++.++++...+ ++++..+++.++++++.+.|++.|+++..+... ..+.++++.+
T Consensus       231 ---------~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~~~  299 (384)
T 1eg5_A          231 ---------ERGLRSGTQNVPGIVGAARAMEIAVE-ELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEI-SLPNTLSVSF  299 (384)
T ss_dssp             ---------TTTTBCSCCCHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHTTTCEECSCTTS-BCTTEEEEEC
T ss_pred             ---------cccccCCCCChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHhCCCCeEEeCCccc-CCCCEEEEEe
Confidence                     00122446778777888888887543 578899999999999999998878777553221 2345677777


Q ss_pred             CCCCCHHHHHHHHHhhCCeEEccCCCCC-------------------CCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          314 PSHINSSEIVRRAWQRYNLSLGLGLNKV-------------------AGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       314 ~~~~~~~~l~~~L~~~~~i~v~~g~~~~-------------------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      + +.+..++.+.|.++ ||.+.+|..+.                   ..+++||++...++++|+++++++|+++++++.
T Consensus       300 ~-~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  377 (384)
T 1eg5_A          300 P-NIRGSTLQNLLSGY-GIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLD  377 (384)
T ss_dssp             T-TCCHHHHHHHHHHT-TEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred             C-CCCHHHHHHHHhhC-CeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            5 45788899998755 99999874321                   136899998877899999999999999998764

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=100.00  E-value=3e-36  Score=285.45  Aligned_cols=338  Identities=14%  Similarity=0.115  Sum_probs=262.8

Q ss_pred             cccccCCCcCChHHHHHHHccCcCC-----CCCc----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNED-----YRSP----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT   80 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~----~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~   80 (401)
                      .|++.+++++.++.|++++.+....     +..+    ...+...++++.+++++|.++ +.+++++|+++|+..++.++
T Consensus         2 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-~~v~~~~g~t~a~~~~~~~l   80 (382)
T 4eb5_A            2 AYFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGG-GTVVFTSGATEANNLAIIGY   80 (382)
T ss_dssp             CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTT-EEEEEESSHHHHHHHHHHHH
T ss_pred             eeeccCCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCC-CeEEEcCchHHHHHHHHHHH
Confidence            5888888889999999998875432     1112    234678899999999999864 45999999999999999887


Q ss_pred             C----CCCCeEEEEcCCcchHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc
Q 015729           81 L----SPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN  155 (401)
Q Consensus        81 ~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~  155 (401)
                      .    ++||+|+++.++|++.. ....++..|++++.++.+.++.+|++++++++++    +++++++++++||||.+.|
T Consensus        81 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~~~v~~~~~~nptG~~~~  156 (382)
T 4eb5_A           81 AMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD----DTILVSVQHANNEIGTIQP  156 (382)
T ss_dssp             HHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT----TEEEEECCSBCTTTCBBCC
T ss_pred             HhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC----CCeEEEEeccCCCccccCC
Confidence            6    89999999999988775 2233445799999999988888999999999874    5799999999999999999


Q ss_pred             hHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchH
Q 015729          156 LSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK  235 (401)
Q Consensus       156 l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~  235 (401)
                      +++|.++|++  +|++ |+|++|+++..+++....++|++++|+||++ |+.|+|+++++++.  .+.........    
T Consensus       157 l~~i~~l~~~--~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~-g~~g~G~~~~~~~~--~l~~~~~~~~~----  226 (382)
T 4eb5_A          157 VEEISEVLAG--KAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIY-GPKGVGALWIRKEA--KLQPVILGGGQ----  226 (382)
T ss_dssp             HHHHHHHHTT--SSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGT-CCSSCEEEEEETTC--CCCCSSCSSCT----
T ss_pred             HHHHHHHHHH--CCCE-EEEcchhcCCcccCccccCCCEEEeehHHhc-CCCceEEEEEcccc--ccCceecCCCc----
Confidence            9999999999  9999 9999999877666655557899999999975 67789999998763  12211100000    


Q ss_pred             HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcC
Q 015729          236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVP  314 (401)
Q Consensus       236 ~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~  314 (401)
                        ..     .+..++++...++++.++++.+.+ ++++..++++++++++.+.|+++ |+++..+... ..+.++++.++
T Consensus       227 --~~-----~~~~~~~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~  297 (382)
T 4eb5_A          227 --EN-----GLRSGSENVPSIVGFGKAAEITAM-EWREEAERLRRLRDRIIDNVLKIEESYLNGHPEK-RLPNNVNVRFS  297 (382)
T ss_dssp             --GG-----GTSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSS-BCTTEEEEEET
T ss_pred             --cc-----cccCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCccc-CCCCEEEEEeC
Confidence              00     122345777777888888887665 57889999999999999999887 7766543221 23446778885


Q ss_pred             CCCCHHHHHHHHHhhCCeEEccCCCCC-------------------CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          315 SHINSSEIVRRAWQRYNLSLGLGLNKV-------------------AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       315 ~~~~~~~l~~~L~~~~~i~v~~g~~~~-------------------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                       +.+..++.+.|.++ ||.+.+|..+.                   ..+++||++...++++|+++++++|+++++++
T Consensus       298 -~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (382)
T 4eb5_A          298 -YIEGESIVLSLDMA-GIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERL  373 (382)
T ss_dssp             -TSCHHHHHHHHHHH-TCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             -CcCHHHHHHHHHHC-CEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence             56788999999866 99998875311                   14689999887789999999999999998764

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=4.8e-35  Score=279.60  Aligned_cols=344  Identities=13%  Similarity=0.092  Sum_probs=266.7

Q ss_pred             CCCCC-CCcccccCCCcCChHHHHHHHccCcCCC-----CCcc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHH
Q 015729            3 YMYAP-GKNHLFVPGPVHIPDQVIRAMNRNNEDY-----RSPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGA   72 (401)
Q Consensus         3 ~~~~~-~~~~~~~~~p~~~~~~v~~a~~~~~~~~-----~~~~----~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a   72 (401)
                      |+... +..|++.+++.+.++.+++++.+.....     ..+.    ..+...++++.+++++|.++. .+++++|+|++
T Consensus        20 fp~~~~~~~~ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~t~a   98 (406)
T 3cai_A           20 HPSLGDGWVHFDAPAGMLIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPG-GVVLGADRAVL   98 (406)
T ss_dssp             CTTTTSSCEECBGGGCCCCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEESCHHHH
T ss_pred             hhhcCCCeEEEeCCCcCCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCChHHH
Confidence            44444 4789999988899999999988743211     1121    356788999999999998643 49999999999


Q ss_pred             HHHHHhcc---CCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCC-CCCCCChHHHHHHHhccCCCCceEEEEEec
Q 015729           73 WESALTNT---LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHN  146 (401)
Q Consensus        73 ~~~~~~~~---~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~-~~~~~d~~~le~~~~~~~~~~~~~i~~~~~  146 (401)
                      +..++.++   +++||+|+++.++|++..  +..+++..|++++.++.+ .++.+|++++++++++    ++++|+++++
T Consensus        99 l~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~----~~~~v~~~~~  174 (406)
T 3cai_A           99 LSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISK----STRLVAVNSA  174 (406)
T ss_dssp             HHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCT----TEEEEEEESB
T ss_pred             HHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCC----CceEEEEeCC
Confidence            99988776   789999999999988764  334455579999999987 5677899999999863    6799999999


Q ss_pred             CCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcce-EEEecHHHHHHhccC
Q 015729          147 ETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMG-IVCASPKALEASKTA  225 (401)
Q Consensus       147 ~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G-~l~~~~~~~~~~~~~  225 (401)
                      +||||.+.|+++|.++|++  +|+++|+|++|+.+..+++....++|++++|+||++ |+. +| ++++++++.+++...
T Consensus       175 ~nptG~~~~l~~i~~l~~~--~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~-g~~-~G~~~~~~~~~~~~l~~~  250 (406)
T 3cai_A          175 SGTLGGVTDLRAMTKLVHD--VGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWG-GPP-IGAMVFRDPSVMNSFGSV  250 (406)
T ss_dssp             CTTTCBBCCCHHHHHHHHH--TTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGT-SCS-CEEEEESCHHHHHTSCCC
T ss_pred             cCCccccCCHHHHHHHHHH--cCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhc-CCC-cCeEEEEehHHHhhcCCc
Confidence            9999999999999999999  999999999999887766666668999999999976 454 88 999999988777643


Q ss_pred             CCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhc--------------HHHHHHHHHHHHHHHHHHHHH
Q 015729          226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG--------------LENVIERHRRLGKATRLAVEA  291 (401)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g--------------~~~~~~~~~~~~~~l~~~L~~  291 (401)
                      ...   +.. .....+     ..++++...++++.++++.+...|              +++..++..++++++.+.|++
T Consensus       251 ~~~---~~~-~~~~~~-----~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  321 (406)
T 3cai_A          251 STN---PYA-TGPARL-----EIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRS  321 (406)
T ss_dssp             CSC---TTC-CGGGGG-----CCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccC---CCC-Cccccc-----cCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            210   000 000111     234588888888888898876543              678888999999999999998


Q ss_pred             c-CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCC--------C-CCCcEEEEeecccCCHHHHHH
Q 015729          292 W-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLN--------K-VAGKVFRIGHLGHLNELQLLG  361 (401)
Q Consensus       292 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~--------~-~~~~~~Ri~~~~~~~~~di~~  361 (401)
                      + |+++..+.. ...+ ++++.++ +.+..++.+.|.++ ||.+.+|..        . ...+++||++...++++|+++
T Consensus       322 ~~~~~~~~~~~-~~~~-~~~~~~~-~~~~~~~~~~L~~~-gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~  397 (406)
T 3cai_A          322 LPLVMLIGRPE-AQIP-VVSFAVH-KVPADRVVQRLADN-GILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQ  397 (406)
T ss_dssp             CTTEEECCCCS-SBCS-EEEEEET-TBCHHHHHHHHHHT-TEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHH
T ss_pred             CCCeEEcCCcc-ccCC-EEEEEEC-CcCHHHHHHHHHHC-CcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHH
Confidence            7 776655332 1344 6778885 45788899999765 999988751        1 124689999988889999999


Q ss_pred             HHHHHHH
Q 015729          362 CLAGVEM  368 (401)
Q Consensus       362 ~~~~i~~  368 (401)
                      ++++|++
T Consensus       398 ~~~~l~~  404 (406)
T 3cai_A          398 LVRALAS  404 (406)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9999875

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=100.00  E-value=7.5e-36  Score=290.31  Aligned_cols=349  Identities=12%  Similarity=0.047  Sum_probs=268.9

Q ss_pred             CCcccccCCCcCChHHHHHHHccCc--------CCCC--CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 015729            8 GKNHLFVPGPVHIPDQVIRAMNRNN--------EDYR--SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL   77 (401)
Q Consensus         8 ~~~~~~~~~p~~~~~~v~~a~~~~~--------~~~~--~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~   77 (401)
                      +..|+++.+..+.++.+.+++.+..        ..+.  .+.+.+...++++.+++++|.++. ++++++|+|++++.++
T Consensus        67 ~~iyld~~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~t~g~t~al~~~~  145 (465)
T 3e9k_A           67 NAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEK-EIALMNALTVNLHLLM  145 (465)
T ss_dssp             BCEECBTTTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGG-GEEECSCHHHHHHHHH
T ss_pred             CeEEecCCccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcC-CEEEECCHHHHHHHHH
Confidence            5678888877666666655444311        1111  123445667899999999999754 4999999999999999


Q ss_pred             hccCCCCCe---EEEEcCCcchHH--HHHHHHHcCCcE-----EEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecC
Q 015729           78 TNTLSPGDR---IISFLIGQFSLL--WIDQQQRLNFNV-----DVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNE  147 (401)
Q Consensus        78 ~~~~~~gd~---vl~~~~~~~~~~--~~~~~~~~g~~~-----~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~  147 (401)
                      .++++++++   |++..++|++..  +...++..|+++     ..++.+.++.+|++++++++++.+ +++++|++++++
T Consensus       146 ~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~-~~~~lv~~~~~~  224 (465)
T 3e9k_A          146 LSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEG-DSIAVILFSGVH  224 (465)
T ss_dssp             HHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHG-GGEEEEEEESBC
T ss_pred             HHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcC-CCeEEEEEeCcc
Confidence            888876655   999999998865  455677788875     344556667889999999997532 367999999999


Q ss_pred             CCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCC
Q 015729          148 TATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAK  226 (401)
Q Consensus       148 n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~  226 (401)
                      ||||.+.|+++|.++|++  +|+++|+|++|+.|..+++...+++|++++|+||+++ |+.|+|++++++++.+.+.+..
T Consensus       225 n~tG~~~~l~~i~~la~~--~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~  302 (465)
T 3e9k_A          225 FYTGQHFNIPAITKAGQA--KGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPAL  302 (465)
T ss_dssp             TTTCBBCCHHHHHHHHHH--TTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSS
T ss_pred             cCcceeecHHHHHHHHHH--cCCEEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcc
Confidence            999999999999999999  9999999999999998888888899999999999995 5667899999999877665443


Q ss_pred             CCccccc------------hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH---
Q 015729          227 SVRVFFD------------WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA---  291 (401)
Q Consensus       227 ~~~~~~~------------~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~---  291 (401)
                      .......            +......++     .++++...++++.++++.+...++++++++..++++++.+.|++   
T Consensus       303 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  377 (465)
T 3e9k_A          303 VGWFGHELSTRFKMDNKLQLIPGVCGFR-----ISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYG  377 (465)
T ss_dssp             CCGGGBCHHHHTTCCSCCCBCSSGGGGC-----CSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             cCccCCCCCcccccCCCcCcCCChHHhc-----cCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            2111010            000111222     33699999999999999998888999999999999999999988   


Q ss_pred             --------cCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEee-cccCCHHHHHHH
Q 015729          292 --------WGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGH-LGHLNELQLLGC  362 (401)
Q Consensus       292 --------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~-~~~~~~~di~~~  362 (401)
                              .|+++..+.+....+.++++.++  .+..++.+.|.++ ||.+...    .++++||++ ..+++++|++++
T Consensus       378 ~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~--~~~~~l~~~L~~~-Gi~v~~~----~~~~iRis~~~~~~t~edi~~~  450 (465)
T 3e9k_A          378 KDKAATKKPVVNIITPSHVEERGCQLTITFS--VPNKDVFQELEKR-GVVCDKR----NPNGIRVAPVPLYNSFHDVYKF  450 (465)
T ss_dssp             ---------CEEECSCSSGGGBCSCEEEEEC--CTTCCHHHHHHTT-TEECEEE----TTTEEEEBCCTTTCCHHHHHHH
T ss_pred             ccccccCCCCeEEeCCCCHhhcccEEEEEec--CCHHHHHHHHHHC-CEEEecC----CCCEEEEeCcccCCCHHHHHHH
Confidence                    47777665433234557778885  3567889999876 9987622    357999998 678999999999


Q ss_pred             HHHHHHHHHh
Q 015729          363 LAGVEMILKD  372 (401)
Q Consensus       363 ~~~i~~~l~~  372 (401)
                      +++|++++++
T Consensus       451 ~~~l~~~l~~  460 (465)
T 3e9k_A          451 TNLLTSILDS  460 (465)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHHh
Confidence            9999999865

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=100.00  E-value=1.7e-34  Score=275.17  Aligned_cols=344  Identities=15%  Similarity=0.185  Sum_probs=259.4

Q ss_pred             CcccccCCCcCChHHHHHHHccC---cCC--CCCccHHHHHHHHHHHHHHHhcCCCCceEEe-cCChhHHHHHHHhccCC
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRN---NED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLI-PTTGTGAWESALTNTLS   82 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~---~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~-~~g~t~a~~~~~~~~~~   82 (401)
                      ..|+|.+||.++++.|++++.+.   ...  ++++.+.+...++++.+++++|.+.++++++ ++|+|+|++.++.++++
T Consensus        40 ~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~  119 (398)
T 2fyf_A           40 RDGRFGSGPSKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLID  119 (398)
T ss_dssp             SSCBCCSSSCCCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCS
T ss_pred             CCccccCCCCCCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcC
Confidence            57899999999999999999883   221  3445555678899999999999985456888 99999999999999888


Q ss_pred             CCCeEEEEcCCcchHHHHHHHHHc--CCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHH
Q 015729           83 PGDRIISFLIGQFSLLWIDQQQRL--NFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVR  160 (401)
Q Consensus        83 ~gd~vl~~~~~~~~~~~~~~~~~~--g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~  160 (401)
                      +|  ++++..+.|+..+...+...  |++++.++.+.+...+. +    ++    +++++|++++++||||.+.|+++|.
T Consensus       120 ~g--v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~g~~~~~-~----i~----~~~~~v~~~~~~nptG~~~~~~~i~  188 (398)
T 2fyf_A          120 KR--SLHLTYGEFSAKFASAVSKNPFVGEPIIITSDPGSAPEP-Q----TD----PSVDVIAWAHNETSTGVAVAVRRPE  188 (398)
T ss_dssp             SC--EEEEECSHHHHHHHHHHHHCTTSCCCEEEECCTTCCCCC-C----CC----TTCSEEEEESEETTTTEECCCCCCT
T ss_pred             CC--eEEEeCCHHHHHHHHHHHHhCCCCceEEEecCCCCCCCc-c----cc----CCCCEEEEeCcCCCcceecchHHhh
Confidence            86  33334555654433445555  88999999874333332 1    22    4679999999999999999998887


Q ss_pred             HHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCC----CCccccchHH
Q 015729          161 KLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAK----SVRVFFDWKD  236 (401)
Q Consensus       161 ~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~----~~~~~~~~~~  236 (401)
                      ++     +|+++|+|++|+.+..+.+..  ++|++++|+||+++++.|+|++++++++++++....    ....+.+...
T Consensus       189 ~~-----~~~~vivD~a~~~~~~~~~~~--~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~  261 (398)
T 2fyf_A          189 GS-----DDALVVIDATSGAGGLPVDIA--ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPI  261 (398)
T ss_dssp             TC-----C-CEEEEECTTTTTTSCCCGG--GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHH
T ss_pred             hh-----cCCeEEEEeccccCCcccCcc--cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcEEehHH
Confidence            65     789999999999888766654  489999999999965557899999999887763210    0011233332


Q ss_pred             HHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcC
Q 015729          237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVP  314 (401)
Q Consensus       237 ~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~  314 (401)
                      ....+..+ +..++++...++++.++++.+.+.| +++..+++.++++++.+.|+++ |+++..+.+...++.++++.+|
T Consensus       262 ~~~~~~~~-~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~  340 (398)
T 2fyf_A          262 AVENSLKN-QTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFV  340 (398)
T ss_dssp             HHHHHTTT-CCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEEC
T ss_pred             HhhhcccC-CCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECC
Confidence            22222222 2345788888888999999887776 8999999999999999999998 7777642121235557888887


Q ss_pred             CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          315 SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       315 ~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      ++.+..++.+.|.++ ||.+++++....++++||++..+++++|+++++++|++++++
T Consensus       341 ~~~~~~~l~~~L~~~-gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~  397 (398)
T 2fyf_A          341 DDVDAGTVAKILRAN-GIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVER  397 (398)
T ss_dssp             TTSCHHHHHHHHHHT-TCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHC-CcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            777888999999877 999988754334578999998888999999999999998865

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=100.00  E-value=2e-35  Score=281.71  Aligned_cols=340  Identities=13%  Similarity=0.144  Sum_probs=246.1

Q ss_pred             CCcccccCCCcCChHHHHHHHccCcCC-----CC----CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            8 GKNHLFVPGPVHIPDQVIRAMNRNNED-----YR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~----~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      +..|++.+++.++++.+++++.+....     ..    +....+...++++.+++++|.++. .+++++|+++|+..++.
T Consensus        20 ~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~~g~t~al~~~~~   98 (400)
T 3vax_A           20 HMTYLDAAATTRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPD-ELIFTSGATESNNIALL   98 (400)
T ss_dssp             --CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGG-GEEEESCHHHHHHHHHH
T ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCC-cEEEeCCHHHHHHHHHH
Confidence            468999999999999999998885421     11    122345688999999999998754 49999999999999998


Q ss_pred             ccC----CCCC-eEEEEcCCcchHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccc
Q 015729           79 NTL----SPGD-RIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV  152 (401)
Q Consensus        79 ~~~----~~gd-~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~  152 (401)
                      +++    ++|| +|+++.++|+++. ........|++++.++.+.++.+|++++++++++    +++++++++++||||.
T Consensus        99 ~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~~~v~~~~~~nptG~  174 (400)
T 3vax_A           99 GLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLRP----DTLLVSLMHVNNETGV  174 (400)
T ss_dssp             TTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCCT----TEEEEECCSBCTTTCB
T ss_pred             HHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcCC----CceEEEEECCCCCcee
Confidence            887    8999 9999999888865 2233455799999999998888999999998874    6799999999999999


Q ss_pred             ccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEE-ecHHHHH----HhccCCC
Q 015729          153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVC-ASPKALE----ASKTAKS  227 (401)
Q Consensus       153 ~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~-~~~~~~~----~~~~~~~  227 (401)
                      +.|+++|.++|++  +|+++|+|++|+.+..+.+.... +|++++|.||. .|+.|+|+++ ++++.+.    .+.....
T Consensus       175 ~~~l~~i~~la~~--~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~~~~~~~~~~~~  250 (400)
T 3vax_A          175 IQPVAELAQQLRA--TPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHKI-GAPKGVGALVTRRREEMDDERVPLEPIMF  250 (400)
T ss_dssp             BCCHHHHHHHHTT--SSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGGG-TSCSSCEEEEECBCSSSTTCBCCCCCSSC
T ss_pred             eCcHHHHHHHHHh--cCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHHh-CCCCceEEEEEecchhccccccccCceec
Confidence            9999999999999  99999999999988877777666 99999999994 5688899999 8873211    1211110


Q ss_pred             CccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCce
Q 015729          228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT  307 (401)
Q Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  307 (401)
                      ....          . ..+..++++...++++.++++.+.+ ++++..+++.++++++.+.|+..|+++..+... ..+.
T Consensus       251 ~~~~----------~-~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~  317 (400)
T 3vax_A          251 GGGQ----------E-RKLRPGTLPVPLIMGLAEAAKIFEA-EHAQWQVAAQDLRSRLLAGLASTSFQVNGDQDH-VVPH  317 (400)
T ss_dssp             SSCT----------G-GGTSCSCCCHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHTTTTCEECSCTTS-BCTT
T ss_pred             CCCc----------e-eeeecCCCCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhhCCCCEEEeCCccc-CCCC
Confidence            0000          0 0122446788888888888887655 678899999999999999998337877664432 3345


Q ss_pred             eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCC-------------------CcEEEEee-cccCCHHHHHHHHHHHH
Q 015729          308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVA-------------------GKVFRIGH-LGHLNELQLLGCLAGVE  367 (401)
Q Consensus       308 ~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~-------------------~~~~Ri~~-~~~~~~~di~~~~~~i~  367 (401)
                      ++.+.++ +.+..++.+.|. + ||.+++|..+..                   ++++||++ ....+++|+++++++|+
T Consensus       318 ~~~~~~~-~~~~~~l~~~L~-~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~  394 (400)
T 3vax_A          318 ILNLSFE-DVDAEAFLVTLK-D-LVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVA  394 (400)
T ss_dssp             EEEEECT-TCCHHHHHHHHH-H-HHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC---------------
T ss_pred             EEEEEeC-CCCHHHHHHHHh-c-CcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHH
Confidence            6777775 567889999998 6 998887642211                   37899999 77889999999999999


Q ss_pred             HHHHh
Q 015729          368 MILKD  372 (401)
Q Consensus       368 ~~l~~  372 (401)
                      +++++
T Consensus       395 ~~~~~  399 (400)
T 3vax_A          395 KLKPS  399 (400)
T ss_dssp             -----
T ss_pred             HHhcc
Confidence            88753

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=100.00  E-value=1.7e-35  Score=279.20  Aligned_cols=341  Identities=12%  Similarity=0.090  Sum_probs=258.8

Q ss_pred             CCCCccccc-CCCcCChHHHHHHHccCcCCC----------CCccHHHHHHHHHHH-HHHHhcCCCCceEEecCChhHHH
Q 015729            6 APGKNHLFV-PGPVHIPDQVIRAMNRNNEDY----------RSPAVPALTKTLLED-IKKIFKTTSGTPFLIPTTGTGAW   73 (401)
Q Consensus         6 ~~~~~~~~~-~~p~~~~~~v~~a~~~~~~~~----------~~~~~~~~~~~l~~~-la~~~g~~~~~~i~~~~g~t~a~   73 (401)
                      .|+-.|++. .+..++++.+++++.+.....          ..+...+...++++. +++++|.+   .+++++|+|+|+
T Consensus         6 ~~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~---~v~~~~g~t~a~   82 (371)
T 2e7j_A            6 TKDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD---VARVTNGAREAK   82 (371)
T ss_dssp             --CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS---EEEEESSHHHHH
T ss_pred             CCCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC---EEEEeCChHHHH
Confidence            455667777 556778899999998865321          123345568899999 99999987   599999999999


Q ss_pred             HHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEe--CCCCCCCChHHHHHHHhccCC-CCceEEEEEecCCCc
Q 015729           74 ESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVE--SDWGEGAKLDVLASKLAADTA-HTIKAICIVHNETAT  150 (401)
Q Consensus        74 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~--~~~~~~~d~~~le~~~~~~~~-~~~~~i~~~~~~n~t  150 (401)
                      ..++.+++++||+|+++.++|++...  .++..|++++.++  .+.++.+|++++++++++... ++++++++++++|||
T Consensus        83 ~~~~~~~~~~gd~vl~~~~~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~npt  160 (371)
T 2e7j_A           83 FAVMHSLAKKDAWVVMDENCHYSSYV--AAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNY  160 (371)
T ss_dssp             HHHHHHHCCTTCEEEEETTCCHHHHH--HHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTT
T ss_pred             HHHHHHHhCCCCEEEEccCcchHHHH--HHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCC
Confidence            99999889999999999999888763  3677899999999  777788999999999974210 257999999999999


Q ss_pred             ccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHH-hccCCCCc
Q 015729          151 GVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEA-SKTAKSVR  229 (401)
Q Consensus       151 G~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~-~~~~~~~~  229 (401)
                      |.+.|+++|.++|++  +|+++|+|++|+.+..+.+....++|++++|.||+++++.++|++++++++.+. +...... 
T Consensus       161 G~~~~~~~i~~~~~~--~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~~-  237 (371)
T 2e7j_A          161 GNLPDVKKIAKVCSE--YDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKY-  237 (371)
T ss_dssp             CCCCCHHHHHHHHHT--TTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSC-
T ss_pred             cccCCHHHHHHHHHH--cCCeEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCCCcEEEEEechhhhhhccccccC-
Confidence            999999999999999  999999999999887766666667899999999999887889999999987666 5543220 


Q ss_pred             cccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHH--HHHHHHHHHHHHHcCCccccCCCccCCce
Q 015729          230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERH--RRLGKATRLAVEAWGLKNCTQKEEWFSDT  307 (401)
Q Consensus       230 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~--~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  307 (401)
                      ...+     ..+     ..++++...++++.++++.+..    +..++.  .++++++.+.|+++|+++..+...  .+.
T Consensus       238 ~~~~-----~~~-----~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~  301 (371)
T 2e7j_A          238 KNKE-----VEL-----LGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKLGIKQLGDNPH--NHD  301 (371)
T ss_dssp             TTSB-----GGG-----TTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHTTCEEESSSSC--CSS
T ss_pred             cccc-----ccc-----ccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCcEEecCCCc--cCc
Confidence            0000     001     1345777777777788877654    456666  888899999998888777654221  234


Q ss_pred             eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCC-----CCCCcEEE-Eeeccc-CCHHHHHHHHHHHHHHHHhcC
Q 015729          308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLN-----KVAGKVFR-IGHLGH-LNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       308 ~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~-----~~~~~~~R-i~~~~~-~~~~di~~~~~~i~~~l~~~~  374 (401)
                      ++++.++   +..++.+.|.++ ||.+.+...     ...++++| +++... ++++|+++++++|++++++++
T Consensus       302 ~~~~~~~---~~~~~~~~l~~~-gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~~~  371 (371)
T 2e7j_A          302 LMFFHAE---VLYEISKKAKGG-RFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKYS  371 (371)
T ss_dssp             EEEEECH---HHHHHHHHSSSG-GGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred             eEEEECC---CHHHHHHHHHHC-CEEEEeccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHhcC
Confidence            7888885   567888888755 998876211     11256899 988876 899999999999999988753

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=100.00  E-value=6.2e-34  Score=272.79  Aligned_cols=351  Identities=16%  Similarity=0.138  Sum_probs=259.4

Q ss_pred             CCCCCCCcccccCCCcCChHHHHHHHccCcCCCCC-c--------cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHH
Q 015729            3 YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRS-P--------AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAW   73 (401)
Q Consensus         3 ~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~-~--------~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~   73 (401)
                      |+..++..|++..++.+.++.+++++.+......+ +        ...+...++++.+++++|.++. .+++++|+++++
T Consensus        23 f~~~~~~~yld~~~~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~t~al  101 (416)
T 1qz9_A           23 FALPEGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDG-EVVVTDTTSINL  101 (416)
T ss_dssp             BCCCTTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTT-SEEECSCHHHHH
T ss_pred             CCCCCCeEeecCCCcCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcc-cEEEeCChhHHH
Confidence            45557789999888888888888888775432111 1        1235678999999999998653 489999999999


Q ss_pred             HHHHhccC------CCCCeEEEEcC-CcchHH--HHHHHHHc--CCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEE
Q 015729           74 ESALTNTL------SPGDRIISFLI-GQFSLL--WIDQQQRL--NFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAIC  142 (401)
Q Consensus        74 ~~~~~~~~------~~gd~vl~~~~-~~~~~~--~~~~~~~~--g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~  142 (401)
                      ..++.+++      ++||++++..+ .|.++.  +...++..  |++++.++.       +++++++++    +++++++
T Consensus       102 ~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~~~l~~~i~----~~~~~v~  170 (416)
T 1qz9_A          102 FKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS-------PEELPQAID----QDTAVVM  170 (416)
T ss_dssp             HHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS-------GGGHHHHCS----TTEEEEE
T ss_pred             HHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc-------HHHHHHHhC----CCceEEE
Confidence            88887765      89998666655 444433  22344445  889988885       788998886    3679999


Q ss_pred             EEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcc-eEEEecHHHHHH
Q 015729          143 IVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGM-GIVCASPKALEA  221 (401)
Q Consensus       143 ~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~-G~l~~~~~~~~~  221 (401)
                      +++++||||.+.|+++|.++|++  +|+++|+|++|+.|..+.+....++|++++|+||++.+++|+ |++++++++.+.
T Consensus       171 ~~~~~nptG~~~~l~~i~~l~~~--~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~  248 (416)
T 1qz9_A          171 LTHVNYKTGYMHDMQALTALSHE--CGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDL  248 (416)
T ss_dssp             EESBCTTTCBBCCHHHHHHHHHH--HTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTT
T ss_pred             EeccccCcccccCHHHHHHHHHH--cCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCCCeEEEEECHHHHhc
Confidence            99999999999999999999999  999999999999887766655567899999999998777888 999999988766


Q ss_pred             hccCCCCccc----cchHHHHHHhh-cCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc----
Q 015729          222 SKTAKSVRVF----FDWKDYIKFYN-LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----  292 (401)
Q Consensus       222 ~~~~~~~~~~----~~~~~~~~~~~-~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----  292 (401)
                      +.........    +++........ ...+..++++...++++.++++.+.+.++++..+++.++++++.+.|+++    
T Consensus       249 l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  328 (416)
T 1qz9_A          249 VPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAH  328 (416)
T ss_dssp             SCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             cCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            6543211000    00000000000 00122446888888888899998776678899999999999999999986    


Q ss_pred             CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecc-cCCHHHHHHHHHHHHHHHH
Q 015729          293 GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       293 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~-~~~~~di~~~~~~i~~~l~  371 (401)
                      |+++..+........++++.++   +..++.+.|.++ ||.+...    .++++||++.. .++++|+++++++|+++++
T Consensus       329 g~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l~~~-gi~~~~~----~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~  400 (416)
T 1qz9_A          329 ELTLVTPREHAKRGSHVSFEHP---EGYAVIQALIDR-GVIGDYR----EPRIMRFGFTPLYTTFTEVWDAVQILGEILD  400 (416)
T ss_dssp             CCEECSCSSGGGBCSEEEEECT---THHHHHHHHHTT-TEECEEE----TTTEEEEECCTTTCCHHHHHHHHHHHHHHHH
T ss_pred             CeEEeCCCCHHHcCCEEEEecC---CHHHHHHHHHhC-CcEeccC----CCCeEEEeCcccCCCHHHHHHHHHHHHHHHh
Confidence            7877654321112346788875   367899999866 9886421    35689998863 7899999999999999998


Q ss_pred             hcCC
Q 015729          372 DVGY  375 (401)
Q Consensus       372 ~~~~  375 (401)
                      +..+
T Consensus       401 ~~~~  404 (416)
T 1qz9_A          401 RKTW  404 (416)
T ss_dssp             HTTT
T ss_pred             cccc
Confidence            7653

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=100.00  E-value=1.1e-33  Score=265.74  Aligned_cols=336  Identities=14%  Similarity=0.146  Sum_probs=251.8

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCC------------CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCCh-hHHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNED------------YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTG-TGAWES   75 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~------------~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~-t~a~~~   75 (401)
                      +.|++.+||.++++.+++++.+....            ++.+...+...++++.+++++|.+.++.+++++|+ |+|+..
T Consensus         3 ~~~~~~~g~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~   82 (360)
T 1w23_A            3 QVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTM   82 (360)
T ss_dssp             CCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred             ceEeecCCCcCCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHH
Confidence            57899999999999999999886532            12344566788999999999999755569999998 999999


Q ss_pred             HHhccCCCCC---eEEEEcCCcchHHHHHHHHHcCCcEEEEeCCC-CCCCChHHHHH-HHhccCCCCceEEEEEecCCCc
Q 015729           76 ALTNTLSPGD---RIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLAS-KLAADTAHTIKAICIVHNETAT  150 (401)
Q Consensus        76 ~~~~~~~~gd---~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~le~-~~~~~~~~~~~~i~~~~~~n~t  150 (401)
                      ++.+++.+|+   .|+++.++   +.....++..| +++.++.++ ++.+|++++++ +++    ++++++++++++|||
T Consensus        83 ~~~~l~~~~~~g~~vi~~~~~---~~~~~~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~----~~~k~v~~~~~~npt  154 (360)
T 1w23_A           83 LPMNLLTKGTIGNYVLTGSWS---EKALKEAKLLG-ETHIAASTKANSYQSIPDFSEFQLN----ENDAYLHITSNNTIY  154 (360)
T ss_dssp             HHHHHCCTTCEEEEEECSHHH---HHHHHHHHTTS-EEEEEEECGGGTSCSCCCGGGCCCC----TTEEEEEEESEETTT
T ss_pred             HHHHhcCCCCcccEEEecchh---HHHHHHHHHhC-CeEEeecccccCcCCccchHhhccC----CCCCEEEEeCCCCCc
Confidence            9888876644   44444333   33224467789 999999875 44578889888 764    468999999999999


Q ss_pred             ccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCcc
Q 015729          151 GVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV  230 (401)
Q Consensus       151 G~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~  230 (401)
                      |.+.+     +++++  +|+++|+|++|+.+..+.+...  .|++++|+||++ ++.|+|+++++++.++++....  ..
T Consensus       155 G~~~~-----~i~~~--~~~~li~D~a~~~~~~~~~~~~--~di~~~s~sK~~-~~~G~G~~~~~~~~~~~~~~~~--~~  222 (360)
T 1w23_A          155 GTQYQ-----NFPEI--NHAPLIADMSSDILSRPLKVNQ--FGMIYAGAQKNL-GPSGVTVVIVKKDLLNTKVEQV--PT  222 (360)
T ss_dssp             TEECS-----SCCCC--CSSCEEEECTTTTTSSCCCGGG--CSEEEEETTTTT-SCTTCEEEEEEHHHHCSCCTTC--CG
T ss_pred             ceecc-----ccccc--CCceEEEechhhcCCCCcCccc--CCEEEEEccccc-CCCCcEEEEEcHHHHhhcccCC--cc
Confidence            99987     34446  9999999999998877666554  389999999988 4778999999999877665432  12


Q ss_pred             ccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHcC-C-ccccCCCccCCce
Q 015729          231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWG-L-KNCTQKEEWFSDT  307 (401)
Q Consensus       231 ~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~~~~~~~~~~  307 (401)
                      +.++.....   .+ +..++++...++++.++++.+.+. ++++..++++++++++.+.|++++ + ..... +...++.
T Consensus       223 ~~~~~~~~~---~~-~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~  297 (360)
T 1w23_A          223 MLQYATHIK---SD-SLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAE-KGSRSLM  297 (360)
T ss_dssp             GGCHHHHHH---TT-TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSC-GGGBCSS
T ss_pred             hhhhhhhhh---cc-CCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCC-chhccCc
Confidence            222221110   11 234568888888888999887766 588899999999999999999874 4 33211 1123455


Q ss_pred             eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       308 ~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      ++++.+|+..+..++.+.|.++ ||.+.++...  .+++||++....+++|+++++++|++++++
T Consensus       298 ~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~~~~--~~~iRis~~~~~~~~~i~~~~~~l~~~~~~  359 (360)
T 1w23_A          298 NVTFNLRNEELNQQFLAKAKEQ-GFVGLNGHRS--VGGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHT-TEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCccHHHHHHHHHHC-CeeeecCCCC--CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence            8888886533456788888655 9999877542  568999998888999999999999998764

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=3.4e-33  Score=265.50  Aligned_cols=330  Identities=13%  Similarity=0.051  Sum_probs=252.2

Q ss_pred             cccCCCcCChHHHHHHHccCcCCCC-----CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCC---
Q 015729           12 LFVPGPVHIPDQVIRAMNRNNEDYR-----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSP---   83 (401)
Q Consensus        12 ~~~~~p~~~~~~v~~a~~~~~~~~~-----~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~---   83 (401)
                      .++.++.++++++++++.+......     .+...+...++++.+++++|.++. ++++++|+++|+..++.++..+   
T Consensus        34 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~i~~~~ggt~a~~~~~~~~~~~~~~  112 (397)
T 3f9t_A           34 IFGSMCSNVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDA-YGHIVSGGTEANLMALRCIKNIWRE  112 (397)
T ss_dssp             BCSCSCCCCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTC-EEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCC-CEEEecCcHHHHHHHHHHHHHHHHh
Confidence            3444566677888888877543211     123456778999999999998764 4899999999999998776654   


Q ss_pred             ----------CCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc
Q 015729           84 ----------GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        84 ----------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~  153 (401)
                                ||+|+++.++|++..  ..++..|++++.++.+.++.+|++++++++++   .+++++++++++||||.+
T Consensus       113 ~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~~  187 (397)
T 3f9t_A          113 KRRKGLSKNEHPKIIVPITAHFSFE--KGREMMDLEYIYAPIKEDYTIDEKFVKDAVED---YDVDGIIGIAGTTELGTI  187 (397)
T ss_dssp             HHHTTCCCCSSCEEEEETTCCTHHH--HHHHHHTCEEEEECBCTTSSBCHHHHHHHHHH---SCCCEEEEEBSCTTTCCB
T ss_pred             hhhhcccCCCCeEEEECCcchhHHH--HHHHHcCceeEEEeeCCCCcCCHHHHHHHHhh---cCCeEEEEECCCCCCCCC
Confidence                      999999999988754  55677899999999998888999999999985   156899999999999999


Q ss_pred             cchHHHHHHhhhcCCCcEEEEecccccCcc--------------eeccCcccceEEEecCCCcccCCCcceEEEecHHH-
Q 015729          154 NNLSKVRKLLDEYRHPALFLVDGVSSICAI--------------DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKA-  218 (401)
Q Consensus       154 ~~l~~i~~l~~~~~~~~~li~D~a~~~~~~--------------~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~-  218 (401)
                      .|+++|.++|++  +|+++|+|++|+.+..              +++... ++|++++|.||+++++.++|+++++++. 
T Consensus       188 ~~l~~i~~l~~~--~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~  264 (397)
T 3f9t_A          188 DNIEELSKIAKE--NNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGY  264 (397)
T ss_dssp             CCHHHHHHHHHH--HTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGG
T ss_pred             CCHHHHHHHHHH--hCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCHHH
Confidence            999999999999  9999999999986543              334445 7899999999999777788998887664 


Q ss_pred             HHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCcccc
Q 015729          219 LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCT  298 (401)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~  298 (401)
                      .+.+..... ....         .....+.++.+.....++.++++.+...++++..++..++++++.+.|+++|+++..
T Consensus       265 ~~~~~~~~~-~~~~---------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~  334 (397)
T 3f9t_A          265 KRYLDVDAP-YLTE---------TRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPVI  334 (397)
T ss_dssp             GGGTCEECT-TSSS---------SEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBSS
T ss_pred             HHhhccCCc-cccC---------CCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEc
Confidence            333321110 0000         000011233444466778888887777778889999999999999999998877654


Q ss_pred             CCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      +.    ...++++.++   +..++.+.|.++ ||.+.++..   ++++||++...++++|+++++++|+++++
T Consensus       335 ~~----~~~~~~~~~~---~~~~~~~~l~~~-gi~v~~~~~---~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          335 EP----ILNIVAIEDE---DYKEVCKKLRDR-GIYVSVCNC---VKALRIVVMPHIKREHIDNFIEILNSIKR  396 (397)
T ss_dssp             CC----SSSEEEEECT---THHHHHHHHHHT-TCBCEECSS---SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred             CC----CccEEEEEeC---CHHHHHHHHHhC-CeEEeccCC---CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence            31    2346667764   367899999877 999887754   47999998888899999999999998764

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=100.00  E-value=1.7e-32  Score=257.09  Aligned_cols=317  Identities=10%  Similarity=-0.003  Sum_probs=248.4

Q ss_pred             CCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcc
Q 015729           16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF   95 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~   95 (401)
                      .|.+.++.+++++.+.......+ ......++++.+++++|.++. ++++++|+++|+..++.+++++||+|+++.++|+
T Consensus        26 ~~~~~~~~v~~a~~~~~~~~~~y-~~~~~~~l~~~la~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~  103 (354)
T 3ly1_A           26 NPLGMSPKAQAAARDAVVKANRY-AKNEILMLGNKLAAHHQVEAP-SILLTAGSSEGIRAAIEAYASLEAQLVIPELTYG  103 (354)
T ss_dssp             CSSCCCHHHHHHHHHTGGGTTSC-CHHHHHHHHHHHHHHTTSCGG-GEEEESHHHHHHHHHHHHHCCTTCEEEEESSSCT
T ss_pred             CCCCCCHHHHHHHHHHHhhCcCC-CCCchHHHHHHHHHHhCCChH-HEEEeCChHHHHHHHHHHHhCCCCeEEECCCCch
Confidence            45668899999998866543333 345778999999999998654 4999999999999999998999999999999888


Q ss_pred             hHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEe
Q 015729           96 SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD  175 (401)
Q Consensus        96 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D  175 (401)
                      +..  ..++..|++++.++.+.++.+|++++++++++.  ++++++++++++||||.+.|.+++.++++..++|+++|+|
T Consensus       104 ~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~--~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~D  179 (354)
T 3ly1_A          104 DGE--HFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAY--SGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVD  179 (354)
T ss_dssp             HHH--HHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTC--SSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEE
T ss_pred             HHH--HHHHHcCCEEEEecCCCCCCCCHHHHHHHhccC--CCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEe
Confidence            764  567788999999999888889999999999841  2579999999999999999988877777664489999999


Q ss_pred             cccccCccee------c-cCcc-cceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCC
Q 015729          176 GVSSICAIDF------R-MDEW-GIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTF  246 (401)
Q Consensus       176 ~a~~~~~~~~------~-~~~~-~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  246 (401)
                      ++|+.+...-      . .... +.++++.|.||+++ ++.++|++++++++.+.+.....                   
T Consensus       180 e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~-------------------  240 (354)
T 3ly1_A          180 EAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYVA-------------------  240 (354)
T ss_dssp             CTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGGTT-------------------
T ss_pred             ccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHHHHHhcC-------------------
Confidence            9988543211      0 1122 56799999999995 34457999999998887764321                   


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHH
Q 015729          247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRA  326 (401)
Q Consensus       247 ~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  326 (401)
                       .++++...++++.++++..  ..+++.++++.++++++.+.|++.|+.+..+     .+.++++.++.  +..++.+.|
T Consensus       241 -~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~l  310 (354)
T 3ly1_A          241 -GEKINFSGVDAALASMNDS--AFITYSKKSNDVSRQILLKALEDLKLPYLPS-----EGNFVFHQLVV--PLKDYQTHM  310 (354)
T ss_dssp             -CSCCCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC-----CSSEEEEECSS--CHHHHHHHH
T ss_pred             -CCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHCCCeECCC-----CceEEEEECCC--CHHHHHHHH
Confidence             1346676666666666632  3467888999999999999999888776542     23467888864  678999999


Q ss_pred             HhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          327 WQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       327 ~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .++ ||.+. +..+..++++||++.   +++|+++++++|++++++
T Consensus       311 ~~~-gi~v~-g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~~  351 (354)
T 3ly1_A          311 ADA-GVLIG-RAFPPADNWCRISLG---TPQEMQWVADTMREFRKK  351 (354)
T ss_dssp             HHT-TEECC-CCCTTCTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred             HHC-CEEEe-ecCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence            865 99998 654445778999854   799999999999999875

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=100.00  E-value=4.1e-32  Score=255.46  Aligned_cols=313  Identities=9%  Similarity=0.019  Sum_probs=244.6

Q ss_pred             CCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcc
Q 015729           16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF   95 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~   95 (401)
                      .|.++++.+++++.+.......+ ......++++.+++++|.++. ++++++|+++|++.++.+++++||+|+++.++|+
T Consensus        42 ~~~~~~~~v~~a~~~~~~~~~~y-~~~~~~~lr~~la~~~~~~~~-~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~  119 (363)
T 3ffh_A           42 NPLGTSKKVAAIQANSSVETEIY-PDGWASSLRKEVADFYQLEEE-ELIFTAGVDELIELLTRVLLDTTTNTVMATPTFV  119 (363)
T ss_dssp             CTTCCCHHHHHHHHTCBSCCCBC-----CHHHHHHHHHHHTCCGG-GEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCH
T ss_pred             CCCCCCHHHHHHHHHHHHHhhcC-CCcchHHHHHHHHHHhCCChh-hEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChH
Confidence            35668899999999865433222 345678999999999998654 4999999999999999999999999999999877


Q ss_pred             hHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEe
Q 015729           96 SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD  175 (401)
Q Consensus        96 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D  175 (401)
                      +..  ..++..|++++.++.++++.+|++++++++++    +++++++++++||||.+.|++++.++++.++.|+++|+|
T Consensus       120 ~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~D  193 (363)
T 3ffh_A          120 QYR--QNALIEGAEVREIPLLQDGEHDLEGMLNAIDE----KTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLD  193 (363)
T ss_dssp             HHH--HHHHHHTCEEEEEECCTTSCCCHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEE
T ss_pred             HHH--HHHHHcCCEEEEecCCCCCCcCHHHHHHhccc----CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEe
Confidence            653  56777899999999988888999999999873    679999999999999999999999999992229999999


Q ss_pred             cccccCcc-----eec-cCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCC
Q 015729          176 GVSSICAI-----DFR-MDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP  248 (401)
Q Consensus       176 ~a~~~~~~-----~~~-~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  248 (401)
                      ++|+.+..     ... ....+.++++.|.+|+++ ++.++|++++++++.+.+.....                    .
T Consensus       194 e~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~--------------------~  253 (363)
T 3ffh_A          194 EAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVRP--------------------P  253 (363)
T ss_dssp             CTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTCC--------------------S
T ss_pred             CchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHhCC--------------------C
Confidence            99984332     111 112345688899999984 23345999999998887765321                    2


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-cCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHH
Q 015729          249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-WGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAW  327 (401)
Q Consensus       249 ~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  327 (401)
                      ++++...++++.++++.  ..++++.++++.++++++.+.|++ .|+++..+     .+.++++.++.  +..++.+.|.
T Consensus       254 ~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-----~~~~~~~~~~~--~~~~~~~~l~  324 (363)
T 3ffh_A          254 FNTTSIGQKLAIEAIKD--QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPA-----NGNFVLIDLGI--EAGTIFSYLE  324 (363)
T ss_dssp             CCCBHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCC-----CSSEEEEECSS--CHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCC-----CCeEEEEECCC--CHHHHHHHHH
Confidence            34677666777777763  234678889999999999999999 68877543     23467888864  6889999998


Q ss_pred             hhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          328 QRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       328 ~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      ++ ||.+.+|.....++++||++.   +++|+++++++|+++
T Consensus       325 ~~-gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~  362 (363)
T 3ffh_A          325 KN-GYITRSGAALGFPTAVRITIG---KEEDNSAVIALLEKL  362 (363)
T ss_dssp             HT-TEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred             HC-CeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHHHh
Confidence            76 999999866545789999864   899999999999875

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=100.00  E-value=1.1e-32  Score=262.58  Aligned_cols=300  Identities=16%  Similarity=0.156  Sum_probs=235.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE  119 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  119 (401)
                      ..+...++++.+++++|.+.   .+++++|++|+..++.+++++||.|++..+.|++..  ..++..|++++.++.    
T Consensus        86 ~~~~~~~l~~~la~~~~~~~---~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~--~~~~~~g~~~~~~~~----  156 (399)
T 3tqx_A           86 TQTIHKELEKDISEFLGTDD---TILYSSCFDANGGLFETLLGPEDAIISDELNHASII--DGIRLCKAQRYRYKN----  156 (399)
T ss_dssp             CBHHHHHHHHHHHHHHTCSE---EEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHH--HHHHSCCSEEEEECT----
T ss_pred             CchHHHHHHHHHHHHHCCCc---EEEECchHHHHHHHHHHhcCCCCEEEECCcccHHHH--HHHHHcCCceeEeCC----
Confidence            45678899999999999763   455556789999988889999999999999877654  457778999988885    


Q ss_pred             CCChHHHHHHHhccCC--CCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCccee------ccCc--
Q 015729          120 GAKLDVLASKLAADTA--HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF------RMDE--  189 (401)
Q Consensus       120 ~~d~~~le~~~~~~~~--~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~------~~~~--  189 (401)
                       .|++++++.+++...  .+++++++++++||||.+.|+++|.++|++  +|+++|+|++|+.+....      +...  
T Consensus       157 -~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~  233 (399)
T 3tqx_A          157 -NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADK--YNALVMVDDSHAVGFIGENGRGTPEYCGVA  233 (399)
T ss_dssp             -TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHH--TTCEEEEECTTTTTTSSTTSCCHHHHHTCT
T ss_pred             -CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHH--cCCEEEEECCccccccCCCCCchHHhhCCC
Confidence             378899998876321  167999999999999999999999999999  999999999997553221      1111  


Q ss_pred             ccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh
Q 015729          190 WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE  269 (401)
Q Consensus       190 ~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~  269 (401)
                      .++|++++|.||+++|++| |+++.+++..+.+....            ..+    .+.++.+...++++.++++... .
T Consensus       234 ~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~~~~~~------------~~~----~~~~~~~~~~~~~~~~~l~~~~-~  295 (399)
T 3tqx_A          234 DRVDILTGTLGKALGGASG-GYTSGHKEIIEWLRNRS------------RPY----LFSNTVAPVIVATSLKVLELLK-T  295 (399)
T ss_dssp             TCCSEEEEESSSSSCSSCC-EEEEECHHHHHHHHHHC------------HHH----HSSCCCCHHHHHHHHHHHHHHH-H
T ss_pred             CCCcEEEecchHhcccCce-EEEEcCHHHHHHHHHhC------------cce----eccCCCcHHHHHHHHHHHHHHh-h
Confidence            2579999999999976776 99999999877765421            000    1123577777777888888764 4


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC---CCCcEE
Q 015729          270 GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK---VAGKVF  346 (401)
Q Consensus       270 g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~---~~~~~~  346 (401)
                      +.++.++++.++++++.+.|+++|+++..+     .+.++++.+++..+..++.+.|.++ ||.+.++..+   ...+++
T Consensus       296 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~~~~~~~~i  369 (399)
T 3tqx_A          296 EGPQLRKQLQENSRYFRAGMEKLGFQLVPG-----NHPIIPVMLGDAQLATNMADHLLQE-GIYVVGFSYPVVPMGKARI  369 (399)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHTCCBCCC-----SSSEEEEEEECHHHHHHHHHHHHHT-TEECCEECTTTSCTTCEEE
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHcCCCcCCC-----CCCEEEEEeCCHHHHHHHHHHHHHC-CCEEeeeCCCCCCCCCceE
Confidence            578899999999999999999988877632     2346777776554677899999876 9999876442   234689


Q ss_pred             EEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          347 RIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       347 Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                      ||++...++++|+++++++|++++++++.
T Consensus       370 Ri~~~~~~~~~~i~~~~~~l~~~~~~~~~  398 (399)
T 3tqx_A          370 RVQMSAVHTQQQLDRAIEAFGQVGKKLGA  398 (399)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEeecCCCHHHHHHHHHHHHHHHHHhcC
Confidence            99988788999999999999999998764

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=100.00  E-value=1.1e-32  Score=259.50  Aligned_cols=313  Identities=13%  Similarity=0.099  Sum_probs=242.2

Q ss_pred             CCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcc
Q 015729           16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF   95 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~   95 (401)
                      .|.+.++.+++++.+.......+.... ..++++.+++++|.+.. ++++++|+++|+..++.+++++||+|+++.++|+
T Consensus        40 ~~~~~~~~v~~a~~~~~~~~~~y~~~~-~~~lr~~la~~~~~~~~-~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~  117 (365)
T 3get_A           40 NPFGTPPKAIECLRQNANKAHLYPDDS-MIELKSTLAQKYKVQNE-NIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFA  117 (365)
T ss_dssp             CTTCSCHHHHHHHHHHGGGTTSCCCTT-CHHHHHHHHHHHTCCGG-GEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCT
T ss_pred             CCCCCCHHHHHHHHHHHHhhccCCCCC-hHHHHHHHHHHhCCCcc-eEEECCCHHHHHHHHHHHHhCCCCEEEEeCCChH
Confidence            456678999999887543322222112 25899999999998654 4999999999999999999999999999999887


Q ss_pred             hHHHHHHHHHcCCcEEEEeC-CCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEE
Q 015729           96 SLLWIDQQQRLNFNVDVVES-DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLV  174 (401)
Q Consensus        96 ~~~~~~~~~~~g~~~~~v~~-~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~  174 (401)
                      +..  ..++..|++++.++. +.++ +|+++++++++    ++++++++++++||||.+.|++++.++++...+|+++|+
T Consensus       118 ~~~--~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~----~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~  190 (365)
T 3get_A          118 MYE--IYAKQCGAKCYKTQSITHNL-DEFKKLYETHK----DEIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVI  190 (365)
T ss_dssp             HHH--HHHHHHTCEEEECSSSSCCH-HHHHHHHHHTT----TTEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEE
T ss_pred             HHH--HHHHHcCCEEEEEecCCCCC-CCHHHHHHHhC----CCCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEE
Confidence            654  567778999999998 6667 89999999987    467999999999999999999999998884337999999


Q ss_pred             ecccccCc------ceecc----CcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhc
Q 015729          175 DGVSSICA------IDFRM----DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL  243 (401)
Q Consensus       175 D~a~~~~~------~~~~~----~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (401)
                      |++|+.+.      .+.+.    ...+.++++.|.||+++ ++.++|++++++++.+.+.....                
T Consensus       191 De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~----------------  254 (365)
T 3get_A          191 DAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRA----------------  254 (365)
T ss_dssp             ECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHHSC----------------
T ss_pred             eCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHhcC----------------
Confidence            99988332      11111    22356799999999984 34457999999998777654211                


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHH
Q 015729          244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIV  323 (401)
Q Consensus       244 g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  323 (401)
                          .++++...++++.++++.  ..++++.++++.++++++.+.|++.|+++..+     .+.++++.++.. +..++.
T Consensus       255 ----~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-----~~~~~~~~~~~~-~~~~~~  322 (365)
T 3get_A          255 ----PFNVSNLALKAAVAAMDD--DEFTEKTLENNFSQMELYKEFAKKHNIKIIDS-----YTNFITYFFDEK-NSTDLS  322 (365)
T ss_dssp             ----TTCSCHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHHHHHTTCEECCC-----SSSEEEEECSSS-CHHHHH
T ss_pred             ----CCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhCCCEECCC-----CCeEEEEECCCC-CHHHHH
Confidence                224666666666666663  23477889999999999999999988776543     224578888765 788999


Q ss_pred             HHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          324 RRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       324 ~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      +.|.++ ||.+.+|..+. ++++|+++.   +++|+++++++|++++
T Consensus       323 ~~l~~~-gi~v~~g~~~~-~~~iRis~~---~~~~i~~l~~~l~~~l  364 (365)
T 3get_A          323 EKLLKK-GIIIRNLKSYG-LNAIRITIG---TSYENEKFFTEFDKIL  364 (365)
T ss_dssp             HHHHTT-TEECEECGGGT-CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred             HHHHHC-CEEEEECccCC-CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence            999876 99999886554 689999864   8999999999998876

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=100.00  E-value=2.6e-32  Score=259.25  Aligned_cols=323  Identities=14%  Similarity=0.100  Sum_probs=239.4

Q ss_pred             CChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHh----cCC-CCce-EEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTP-FLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----g~~-~~~~-i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      +.++.+.+++.+.... ...+.......++++.+++++    |.+ .+++ +++++|+++|+..++.+++++||+|+++.
T Consensus        39 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~  118 (389)
T 1gd9_A           39 DTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPT  118 (389)
T ss_dssp             CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEE
T ss_pred             CCCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcC
Confidence            3567777777664321 111221223456677777766    753 3456 99999999999999999899999999999


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhc
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY  166 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~  166 (401)
                      ++|++..  ..++..|++++.++.+.  ++.+|++++++++++    +++++++++++||||.+++   +++|.++|++ 
T Consensus       119 ~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~-  191 (389)
T 1gd9_A          119 PAFVSYA--PAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD----KTRALIINSPCNPTGAVLTKKDLEEIADFVVE-  191 (389)
T ss_dssp             SCCTTHH--HHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH-
T ss_pred             CCchhHH--HHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCc----CceEEEEECCCCCCCcCCCHHHHHHHHHHHHH-
Confidence            9988865  45677899999999875  346899999999874    5789999999999999985   8889999999 


Q ss_pred             CCCcEEEEecccccCcc----eeccCc----ccceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHH
Q 015729          167 RHPALFLVDGVSSICAI----DFRMDE----WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKD  236 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~----~~~~~~----~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~  236 (401)
                       +|+++|+|++|+.+..    ..+...    .+.|+++.|.||+++ ++|  +|++++++++.+.+....          
T Consensus       192 -~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~----------  259 (389)
T 1gd9_A          192 -HDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFA-MTGWRLGFVAAPSWIIERMVKFQ----------  259 (389)
T ss_dssp             -TTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHH----------
T ss_pred             -cCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcC-CcccceEEEEECHHHHHHHHHHH----------
Confidence             9999999999986643    112221    467999999999984 445  699999998877665321          


Q ss_pred             HHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC
Q 015729          237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS  315 (401)
Q Consensus       237 ~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  315 (401)
                            .+  +.++.+...++++.++++..... ++++.+++++++++++.+.|+++|+++..+    ..+.++++.++.
T Consensus       260 ------~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~~~~~  327 (389)
T 1gd9_A          260 ------MY--NATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKP----KGAFYIFPRIRD  327 (389)
T ss_dssp             ------TT--TTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC----CBTTEECCBCGG
T ss_pred             ------hh--hccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCeecCC----CeeeEEEEeccC
Confidence                  01  12345666666666666643321 467788889999999999999888776543    234566677754


Q ss_pred             -CCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          316 -HINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       316 -~~~~~~l~~~L~~~~~i~v~~g~~~~--~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                       +.+..++.+.|.+++||.+.+|..+.  .++++||++..  +++++++++++|++++++..
T Consensus       328 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~~~  387 (389)
T 1gd9_A          328 TGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT--AYEKLEEAMDRMERVLKERK  387 (389)
T ss_dssp             GTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS--CHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhcc
Confidence             56788999999845599999885432  35689998765  89999999999999987653

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=100.00  E-value=1.8e-32  Score=264.03  Aligned_cols=347  Identities=13%  Similarity=0.102  Sum_probs=244.0

Q ss_pred             CCCCCCCcccccCCCcCChHHHHHHHccCcCCC-----CCc----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHH
Q 015729            3 YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDY-----RSP----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAW   73 (401)
Q Consensus         3 ~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~-----~~~----~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~   73 (401)
                      |+...+..||+.+++.+.++.+++++.+.....     ..+    ...+...++++.+++++|.++. ++++++|+++|+
T Consensus        13 ~~~~~~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~t~a~   91 (432)
T 3a9z_A           13 ESPPNRKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQ-DIIFTSGGTESN   91 (432)
T ss_dssp             -----CCEECBTTTCCCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEESCHHHHH
T ss_pred             cCCCCCcEEeeCCccCCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcC-eEEEeCChHHHH
Confidence            445567899999998899999999988743211     111    1335678999999999998644 499999999999


Q ss_pred             HHHHhccC--------CCCCeEEEEcCCcc-------------hHH--HHHHHHHcCCcEEEEeCCC-CCCCChHHHHHH
Q 015729           74 ESALTNTL--------SPGDRIISFLIGQF-------------SLL--WIDQQQRLNFNVDVVESDW-GEGAKLDVLASK  129 (401)
Q Consensus        74 ~~~~~~~~--------~~gd~vl~~~~~~~-------------~~~--~~~~~~~~g~~~~~v~~~~-~~~~d~~~le~~  129 (401)
                      ..++.++.        ++||+|+++.|+|+             +..  +..+++..|++++.++.+. ++.+|+++++++
T Consensus        92 ~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~  171 (432)
T 3a9z_A           92 NLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAA  171 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHT
T ss_pred             HHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHh
Confidence            99887765        48876666665543             332  3345566799999999876 667899999998


Q ss_pred             HhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCC----------cEEEEecccccCcceeccCcccceEEEecC
Q 015729          130 LAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP----------ALFLVDGVSSICAIDFRMDEWGIDVALTGS  199 (401)
Q Consensus       130 ~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~----------~~li~D~a~~~~~~~~~~~~~~~di~~~s~  199 (401)
                      +++    +++++++++++||||.+.|+++|.++|++  +|          +++|+|++|+.+..+++....++|++++|+
T Consensus       172 i~~----~~~~v~~~~~~nptG~~~~~~~i~~l~~~--~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~~~~s~  245 (432)
T 3a9z_A          172 VRP----TTCLVTIMLANNETGVIMPISEISRRIKA--LNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVG  245 (432)
T ss_dssp             CCT----TEEEEECCSBCTTTCBBCCHHHHHHHHHH--HHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSEEEEEG
T ss_pred             ccC----CceEEEEECcccCcccccCHHHHHHHHHh--cCcccccccCCceEEEEEchhhhCCcccChhhcCCCEEEEeh
Confidence            863    57999999999999999999999999999  77          999999999988766665556789999999


Q ss_pred             CCcccCCCcceEEEecHHH-HHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 015729          200 QKALSLPTGMGIVCASPKA-LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERH  278 (401)
Q Consensus       200 ~K~l~g~~g~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~  278 (401)
                      ||++ |+. +|+++++++. ...+.+.......      ...     +..++++...++++.++++.+.+ ++++..+++
T Consensus       246 ~K~~-g~~-~G~~~~~~~~~~~~~~~~~~~~~~------~~~-----~~~~~~~~~~~~a~~aal~~~~~-~~~~~~~~~  311 (432)
T 3a9z_A          246 HKFY-GPR-IGALYVRGVGKLTPLYPMLFGGGQ------ERN-----FRPGTENTPMIAGLGKAADLVSE-NCETYEAHM  311 (432)
T ss_dssp             GGTT-CCS-CEEEEETTBTTTBCCCCSCCSSCG------GGG-----TSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             hHhc-CCc-ceEEEEccccccCCcCceeecCCc------ccc-----ccCCCcCHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence            9987 565 8999998765 2222211100000      011     22446788888888888887655 678899999


Q ss_pred             HHHHHHHHHHHHHc-CCccc--cCC-CccCCceeEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCCC------------
Q 015729          279 RRLGKATRLAVEAW-GLKNC--TQK-EEWFSDTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNKV------------  341 (401)
Q Consensus       279 ~~~~~~l~~~L~~~-g~~~~--~~~-~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~~i~v~~g~~~~------------  341 (401)
                      .++++++.+.|+++ |+.+.  .+. +....+.+++|.+++ +.+..++.+.+.   ++.+..|..+.            
T Consensus       312 ~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~i~~~~G~~~~~~~~~~~~~~l~  388 (432)
T 3a9z_A          312 RDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQ---TLLASVGASCHSDHEDRPSPVLL  388 (432)
T ss_dssp             HHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHCS---SEECBSSCGGGGGGTTSCCHHHH
T ss_pred             HHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHhc---CeEEeccccccCCCCCCccHHHH
Confidence            99999999999985 76543  210 112344567777754 345556655542   66666552211            


Q ss_pred             --------CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          342 --------AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       342 --------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                              .++++||++...+|++|+++++++|+++++++
T Consensus       389 ~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~  428 (432)
T 3a9z_A          389 SCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQL  428 (432)
T ss_dssp             HTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence                    13689999988889999999999999998754

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=100.00  E-value=4.9e-32  Score=255.31  Aligned_cols=313  Identities=14%  Similarity=0.149  Sum_probs=240.0

Q ss_pred             CcCChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCc
Q 015729           17 PVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQ   94 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~   94 (401)
                      |.+.++.+++++.+....  ...+.. ....++++.+++++|.+.++.+++++|+++|++.++.+++++||+|++..++|
T Consensus        41 ~~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~  119 (367)
T 3euc_A           41 PYRLPPALRSELAARLGEVALNRYPV-PSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGF  119 (367)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHTTCSCC-CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCS
T ss_pred             CCCCCHHHHHHHHHHhhhhhhhcCCC-CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCH
Confidence            556788888888774431  111111 24679999999999984445699999999999999999999999999999988


Q ss_pred             chHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCC--C
Q 015729           95 FSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRH--P  169 (401)
Q Consensus        95 ~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~--~  169 (401)
                      ++..  ..++..|++++.++.+.++.+|++++++++++   ++++++++++++||||.+++   +++|.++|++  +  |
T Consensus       120 ~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~--~~~~  192 (367)
T 3euc_A          120 VMYA--MSAQFAGLEFVGVPLRADFTLDRGAMLAAMAE---HQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQG--SVCR  192 (367)
T ss_dssp             CCSC--HHHHTTTCEEEEEECCTTSCCCHHHHHHHHHH---HCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBT--TSCB
T ss_pred             HHHH--HHHHHcCCeEEEecCCCCCCCCHHHHHHHhhc---cCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhh--cCCC
Confidence            8764  45777899999999998888999999999985   25699999999999999975   5667777888  8  9


Q ss_pred             cEEEEecccccCcc---eeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCC
Q 015729          170 ALFLVDGVSSICAI---DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTF  246 (401)
Q Consensus       170 ~~li~D~a~~~~~~---~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  246 (401)
                      +++|+|++|+....   .......+.++++.|.+|+..++.++|++++++++.+.+.....                   
T Consensus       193 ~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~-------------------  253 (367)
T 3euc_A          193 SLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGDPQWLEQLDKVRP-------------------  253 (367)
T ss_dssp             CEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEECHHHHHHHGGGCC-------------------
T ss_pred             cEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccccCceeeeeCHHHHHHHHHhCC-------------------
Confidence            99999999874321   11223445678999999983334457999999998887764311                   


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHHHHHH
Q 015729          247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRR  325 (401)
Q Consensus       247 ~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  325 (401)
                       .++.+...++++.++++.  ..++++.+++..++++++.+.|+++ |+.+...     .+.++++.++   +..++.+.
T Consensus       254 -~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-----~~~~~~~~~~---~~~~l~~~  322 (367)
T 3euc_A          254 -PYNVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPS-----AANFLLARVP---DAAQTFDR  322 (367)
T ss_dssp             -SSCCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCC-----SSSEEEEECS---CHHHHHHH
T ss_pred             -CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCC-----CCeEEEEECC---CHHHHHHH
Confidence             234666666777777765  3346788899999999999999987 8875432     2346778885   67889999


Q ss_pred             HHhhCCeEEccCCC--CCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          326 AWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       326 L~~~~~i~v~~g~~--~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      |.++ ||.+.++..  ...++++||++.   +++|+++++++|+++++
T Consensus       323 l~~~-gi~v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~  366 (367)
T 3euc_A          323 LLAR-KVLIKNVSKMHPLLANCLRVTVS---TPEENAQFLEAFAASLQ  366 (367)
T ss_dssp             HHTT-TEECEECGGGCGGGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred             HHHC-CeEEEECCccCCCCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence            8765 999998754  234578999854   89999999999998763

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=100.00  E-value=6.7e-32  Score=257.18  Aligned_cols=318  Identities=14%  Similarity=0.129  Sum_probs=242.9

Q ss_pred             ChHHHHHHHccCcC----CCC----CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           20 IPDQVIRAMNRNNE----DYR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        20 ~~~~v~~a~~~~~~----~~~----~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      .++.+.+++.+...    ...    ..+..+...++++.+++++|.+   ++++++|+++|+..++.+++++||.|++..
T Consensus        58 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~---~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~  134 (398)
T 3a2b_A           58 TDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKE---AAILFSTGFQSNLGPLSCLMGRNDYILLDE  134 (398)
T ss_dssp             GCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHSSCTTCEEEEET
T ss_pred             CCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHHhCCCCEEEECC
Confidence            56677776665321    111    1123477889999999999874   499999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcE
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPAL  171 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~  171 (401)
                      ++|.++.  ..++..|++++.++.     +|++++++.+++...++++++++++++||||.+.|+++|.++|++  +|++
T Consensus       135 p~~~~~~--~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~--~~~~  205 (398)
T 3a2b_A          135 RDHASII--DGSRLSFSKVIKYGH-----NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANE--FDAA  205 (398)
T ss_dssp             TCCHHHH--HHHHHSSSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHH--HTCE
T ss_pred             ccCHHHH--HHHHHcCCceEEeCC-----CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHH--cCcE
Confidence            9877664  456778999998886     489999999986321167999999999999999999999999999  9999


Q ss_pred             EEEecccccCcce---ecc-C--c--ccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhc
Q 015729          172 FLVDGVSSICAID---FRM-D--E--WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL  243 (401)
Q Consensus       172 li~D~a~~~~~~~---~~~-~--~--~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (401)
                      +|+|++|+.+...   ... .  .  .++|++++|.||+++ ++| |++++++++.+.+....            ..+. 
T Consensus       206 li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G-G~~~~~~~~~~~l~~~~------------~~~~-  270 (398)
T 3a2b_A          206 VMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLG-GFVAGDADVIDFLKHNA------------RSVM-  270 (398)
T ss_dssp             EEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSC-EEEEECHHHHHHHHHHC------------HHHH-
T ss_pred             EEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCC-cEEEeCHHHHHHHHHhc------------ccce-
Confidence            9999999866421   111 1  1  136999999999985 777 99999998877665310            0011 


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHH
Q 015729          244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIV  323 (401)
Q Consensus       244 g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  323 (401)
                         ..+++++..++++.++++...  .+++.++++.++++++.+.|+++|+++..+    . +.++++.++++.+..++.
T Consensus       271 ---~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~-g~~~~~~~~~~~~~~~l~  340 (398)
T 3a2b_A          271 ---FSASMTPASVASTLKALEIIQ--NEPEHIEKLWKNTDYAKAQLLDHGFDLGAT----E-SPILPIFIRSNEKTFWVT  340 (398)
T ss_dssp             ---SSBCCCHHHHHHHHHHHHHHH--HCTHHHHHHHHHHHHHHHHHHHTTCCBCSC----C-SSEEEEECCCHHHHHHHH
T ss_pred             ---ecCCCCHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHhcCCCcCCC----C-CCEEEEEcCCHHHHHHHH
Confidence               122456655556667777643  246788899999999999999888776543    2 357788886555677899


Q ss_pred             HHHHhhCCeEEccCCCCC---CCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          324 RRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       324 ~~L~~~~~i~v~~g~~~~---~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                      +.|.++ ||.+.++..+.   ..+++||++...++++|+++++++|+++++++++
T Consensus       341 ~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~~~  394 (398)
T 3a2b_A          341 KMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAEV  394 (398)
T ss_dssp             HHHHHT-TEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHhCc
Confidence            999877 99999885532   2468999988888999999999999999998876

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=100.00  E-value=1.2e-31  Score=257.77  Aligned_cols=301  Identities=16%  Similarity=0.142  Sum_probs=234.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG  120 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~  120 (401)
                      .+...++++.+++++|.+   ..+++++|++|+..++.+++++||.|++..+.|.+..  ..++..|++++.++.     
T Consensus       108 ~~~~~~l~~~la~~~g~~---~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~--~~~~~~g~~~~~~~~-----  177 (427)
T 2w8t_A          108 FHDHMEVEQALRDFYGTT---GAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIY--DGCQQGNAEIVRFRH-----  177 (427)
T ss_dssp             CHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHH--HHHHHSCSEEEEECT-----
T ss_pred             cHHHHHHHHHHHHHhCCC---ceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHH--HHHHHcCCeeEEeCC-----
Confidence            467889999999999875   2677778889999988888999999999999877654  446778998888873     


Q ss_pred             CChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcce---------eccCccc
Q 015729          121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID---------FRMDEWG  191 (401)
Q Consensus       121 ~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~---------~~~~~~~  191 (401)
                      .|++++++++++....++++|++++++||+|.+.|+++|.++|++  +|+++|+|++|+.+...         ++. ..+
T Consensus       178 ~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~--~g~~li~Dea~~~~~~~~~g~~~~~~~~~-~~~  254 (427)
T 2w8t_A          178 NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKK--HGAMVLVDEAHSMGFFGPNGRGVYEAQGL-EGQ  254 (427)
T ss_dssp             TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHH--TTCEEEEECTTTTTTSSTTSCCHHHHTTC-TTC
T ss_pred             CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHH--cCCEEEEECCccccccCCCCCchHhhcCC-CcC
Confidence            489999999986321267999999999999999999999999999  99999999999976543         232 236


Q ss_pred             ceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcH
Q 015729          192 IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGL  271 (401)
Q Consensus       192 ~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~  271 (401)
                      +|++++|.+|+++ ++| |++++++++.+.+.....            .+.    +.++.++..++++.++++.+..  +
T Consensus       255 ~di~~~s~sK~~g-~~g-G~v~~~~~l~~~l~~~~~------------~~~----~~~~~~~~~~aa~~~al~~~~~--~  314 (427)
T 2w8t_A          255 IDFVVGTFSKSVG-TVG-GFVVSNHPKFEAVRLACR------------PYI----FTASLPPSVVATATTSIRKLMT--A  314 (427)
T ss_dssp             CSEEEEESSSTTC-SCC-EEEEECCTTGGGGGGTCH------------HHH----SSCCCCHHHHHHHHHHHHHHTS--C
T ss_pred             CcEEEecchhhhc-cCC-CEEEeCHHHHHHHHHhcc------------ccc----ccCCCCHHHHHHHHHHHHHHhc--C
Confidence            7999999999994 777 999999888776654210            010    1234677777777788887642  4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEE
Q 015729          272 ENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRI  348 (401)
Q Consensus       272 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~---~~~~~Ri  348 (401)
                      ++.++++.++.+++.+.|+++|+++..+.   ..+.++++.+++..+..++.+.|.++ ||.+.++..+.   ..+++||
T Consensus       315 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRi  390 (427)
T 2w8t_A          315 HEKRERLWSNARALHGGLKAMGFRLGTET---CDSAIVAVMLEDQEQAAMMWQALLDG-GLYVNMARPPATPAGTFLLRC  390 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCEESCSS---CCSSEEEEEESSHHHHHHHHHHHHHT-TEECEEECTTTSCTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcccCCC---CCCCEEEEEECCHHHHHHHHHHHHHC-CeEEeeeCCCCCCCCCeEEEE
Confidence            77899999999999999998887765321   12347788886544567899999877 99998875432   2368999


Q ss_pred             eecccCCHHHHHHHHHHHHHHHHhcCCCCC
Q 015729          349 GHLGHLNELQLLGCLAGVEMILKDVGYPVK  378 (401)
Q Consensus       349 ~~~~~~~~~di~~~~~~i~~~l~~~~~~~~  378 (401)
                      ++...++++|+++++++|++++++++.+..
T Consensus       391 ~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~  420 (427)
T 2w8t_A          391 SICAEHTPAQIQTVLGMFQAAGRAVGVIGL  420 (427)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHHTCC--
T ss_pred             EeCCCCCHHHHHHHHHHHHHHHHHhCcccc
Confidence            998889999999999999999988766543

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=100.00  E-value=6.7e-32  Score=257.86  Aligned_cols=324  Identities=13%  Similarity=0.114  Sum_probs=241.5

Q ss_pred             CcCChHHHHHHHccCcCC-----C-CCccHHHHHHHHHHHHHHHhcCC--CCceEEecCChhHHHHHHHhccCCCCCeEE
Q 015729           17 PVHIPDQVIRAMNRNNED-----Y-RSPAVPALTKTLLEDIKKIFKTT--SGTPFLIPTTGTGAWESALTNTLSPGDRII   88 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~-----~-~~~~~~~~~~~l~~~la~~~g~~--~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl   88 (401)
                      |.+.++.|++++.+....     + ......+..+++.+.+++++|.+  +++.+++++|+++|+..++.+++++||+|+
T Consensus        51 ~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl  130 (407)
T 3nra_A           51 AHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVA  130 (407)
T ss_dssp             TSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTCCTTCEEE
T ss_pred             CCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEE
Confidence            445667777777664321     1 12344677888888899988875  224599999999999999999999999999


Q ss_pred             EEcCCcchHHHHHHHHHcCCcEEEEeC------CCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHH
Q 015729           89 SFLIGQFSLLWIDQQQRLNFNVDVVES------DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKV  159 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~------~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i  159 (401)
                      +..++|++..  ..++..|++++.++.      +.++.+|++++++++++    +++++++++++||||.+.|   +++|
T Consensus       131 ~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~----~~~~v~~~~p~nptG~~~~~~~l~~i  204 (407)
T 3nra_A          131 IVQPDYFANR--KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA----GARVFLFSNPNNPAGVVYSAEEIGQI  204 (407)
T ss_dssp             EEESCCTHHH--HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT----TCCEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             EcCCcccchH--HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh----CCcEEEEcCCCCCCCcccCHHHHHHH
Confidence            9999888764  567788999999998      35667899999999985    5689999999999999998   8889


Q ss_pred             HHHhhhcCCCcEEEEecccccCcce----ecc-----CcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCc
Q 015729          160 RKLLDEYRHPALFLVDGVSSICAID----FRM-----DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVR  229 (401)
Q Consensus       160 ~~l~~~~~~~~~li~D~a~~~~~~~----~~~-----~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~  229 (401)
                      .++|++  +|+++|+|++|+.+...    ...     ...+.++++.|.+|+++ ++.++|++++++++.+.+....   
T Consensus       205 ~~~~~~--~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~---  279 (407)
T 3nra_A          205 AALAAR--YGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQ---  279 (407)
T ss_dssp             HHHHHH--HTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHH---
T ss_pred             HHHHHH--cCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHH---
Confidence            999999  99999999999864321    111     23457899999999985 3345799999998877665321   


Q ss_pred             cccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCcee
Q 015729          230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTV  308 (401)
Q Consensus       230 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~  308 (401)
                               ..      +..+++...++++.++++. ....+++.+++.+++++++.+.|+++ ++.+..+.    .+.+
T Consensus       280 ---------~~------~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~  339 (407)
T 3nra_A          280 ---------AI------VSLRAAGYSQAVLRGWFDE-APGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQ----AGSY  339 (407)
T ss_dssp             ---------HH------HTSSSCHHHHGGGGGTTCC-CTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCS----BSSE
T ss_pred             ---------hh------hccCCChHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCC----eeEE
Confidence                     00      1122444433333333331 01236778888899999999999987 77775532    2346


Q ss_pred             EEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          309 TAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       309 ~~~~~~~-~~~~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +++.++. +.+..++.+.|.+++||.+.+|..+  ...+++||++..  +++++++++++|+++++++
T Consensus       340 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~~~~~  405 (407)
T 3nra_A          340 LFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ--DHEAAVAAARRIVTLVERY  405 (407)
T ss_dssp             ECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS--CHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHHHh
Confidence            6677765 5678899999976669999988543  246789998765  9999999999999998764

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=100.00  E-value=1.4e-31  Score=255.22  Aligned_cols=318  Identities=15%  Similarity=0.130  Sum_probs=241.0

Q ss_pred             ChHHHHHHHccCcCC----CCCccH----HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           20 IPDQVIRAMNRNNED----YRSPAV----PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~----~~~~~~----~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      .++.+++++.+....    +....+    .....++++.+++++|.+  + .+++++|++|+..++.+++++||.|+++.
T Consensus        60 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~--~-~i~~~sGs~a~~~~~~~~~~~gd~v~~~~  136 (401)
T 1fc4_A           60 NHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGME--D-AILYSSCFDANGGLFETLLGAEDAIISDA  136 (401)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCS--E-EEEESCHHHHHHTTHHHHCCTTCEEEEET
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCC--c-EEEeCChHHHHHHHHHHHcCCCCEEEEcc
Confidence            367788777664321    111122    366889999999999986  3 45566778899988888899999999999


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCC--CceEEEEEecCCCcccccchHHHHHHhhhcCCC
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAH--TIKAICIVHNETATGVTNNLSKVRKLLDEYRHP  169 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~--~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~  169 (401)
                      +.|.+..  ..++..|++++.++.     .|++++++.+++...+  +++++++++++||||.+.|+++|.++|++  +|
T Consensus       137 ~~~~~~~--~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~--~~  207 (401)
T 1fc4_A          137 LNHASII--DGVRLCKAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADK--YD  207 (401)
T ss_dssp             TCCHHHH--HHHHTSCSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHH--TT
T ss_pred             hhHHHHH--HHHHHcCCceEEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHH--cC
Confidence            9776554  456778999888873     4899999988752101  57999999999999999999999999999  99


Q ss_pred             cEEEEecccccCcc-e--------eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHH
Q 015729          170 ALFLVDGVSSICAI-D--------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF  240 (401)
Q Consensus       170 ~~li~D~a~~~~~~-~--------~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
                      +++|+|++|+.+.. +        .+.. .+.|+++.|.||+++++.| |++++++++.+.+.....            .
T Consensus       208 ~~li~De~~~~g~~~~~g~~~~~~~~~~-~~~di~~~s~sK~~~~~~g-G~~~~~~~~~~~l~~~~~------------~  273 (401)
T 1fc4_A          208 ALVMVDDSHAVGFVGENGRGSHEYCDVM-GRVDIITGTLGKALGGASG-GYTAARKEVVEWLRQRSR------------P  273 (401)
T ss_dssp             EEEEEECTTTTTTSSTTSCCHHHHTTCT-TCCSEEEEESSSTTCSSSC-EEEEECHHHHHHHHHHCH------------H
T ss_pred             CEEEEECcccccccCCCCCccHHHcCCC-cCCcEEEecchhhccCCCC-EEEEcCHHHHHHHHHhCc------------C
Confidence            99999999974432 1        2222 2579999999999966776 999999998776653210            0


Q ss_pred             hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHH
Q 015729          241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSS  320 (401)
Q Consensus       241 ~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (401)
                      +.    +.++.+...++++.++++.+..  .++..+++.++++++.+.|+++|+++..     ..+.++++.++++.+..
T Consensus       274 ~~----~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~-----~~~~~~~~~~~~~~~~~  342 (401)
T 1fc4_A          274 YL----FSNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAAGFTLAG-----ADHAIIPVMLGDAVVAQ  342 (401)
T ss_dssp             HH----HSCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTTCCBCC-----SSSSEEEEEEECHHHHH
T ss_pred             ce----eCCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCcccC-----CCCCEEEEEcCChHHHH
Confidence            00    1224677777778888887643  3678889999999999999998877653     23457778886544567


Q ss_pred             HHHHHHHhhCCeEEccCCCCC---CCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          321 EIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       321 ~l~~~L~~~~~i~v~~g~~~~---~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                      ++.+.|.++ ||.+.++..+.   ..+++||++...++++|+++++++|+++++++++
T Consensus       343 ~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  399 (401)
T 1fc4_A          343 KFARELQKE-GIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLGV  399 (401)
T ss_dssp             HHHHHHHHT-TEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHC-CcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            899999876 99998875432   2357999988788999999999999999988765

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=100.00  E-value=1.1e-31  Score=255.21  Aligned_cols=323  Identities=13%  Similarity=0.068  Sum_probs=235.4

Q ss_pred             CcCChHHHHHHHccCcCCC-CCccHHHHHHHHHHHHHHHhc----CC-CCceEEecCChhHHHHHHHhccCCCCCeEEEE
Q 015729           17 PVHIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFK----TT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISF   90 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~g----~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   90 (401)
                      +.+.++.+++++.+..... ..+.......++++.++++++    .+ .++++++++|+++|++.++.+++++||+|++.
T Consensus        42 ~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~  121 (391)
T 3h14_A           42 GTGAPRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIG  121 (391)
T ss_dssp             SSCSCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCCCCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEc
Confidence            4555788888888754321 122222235577777777764    22 33459999999999999999999999999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeCCCCC--CCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhh
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVESDWGE--GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE  165 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~  165 (401)
                      .++|++..  ..++..|++++.++.+.++  .+|++++++.       +++++++++++||||.+.|   +++|.++|++
T Consensus       122 ~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~-------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~  192 (391)
T 3h14_A          122 APGYPSYR--QILRALGLVPVDLPTAPENRLQPVPADFAGL-------DLAGLMVASPANPTGTMLDHAAMGALIEAAQA  192 (391)
T ss_dssp             ESCCHHHH--HHHHHTTCEEEEEECCGGGTTSCCHHHHTTS-------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             CCCCccHH--HHHHHcCCEEEEeecCcccCCCCCHHHHHhc-------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHH
Confidence            99887764  5677889999999988654  5699888765       3589999999999999997   7788999999


Q ss_pred             cCCCcEEEEecccccCcc---eeccCc-ccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHH
Q 015729          166 YRHPALFLVDGVSSICAI---DFRMDE-WGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF  240 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~~---~~~~~~-~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
                        +|+++|+|++|+.+..   +..... .+.++++.|.+|+++ ++.++|++++++++.+.+...             ..
T Consensus       193 --~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~-------------~~  257 (391)
T 3h14_A          193 --QGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVVPEDQVRVVERI-------------AQ  257 (391)
T ss_dssp             --TTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEECCGGGHHHHHHH-------------HH
T ss_pred             --cCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEeCHHHHHHHHHH-------------Hh
Confidence              9999999999985432   122222 245688999999995 445679999999887765431             00


Q ss_pred             hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC-CCCH
Q 015729          241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS-HINS  319 (401)
Q Consensus       241 ~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~  319 (401)
                           .+.++++...++++.++++  ....+++.++++.++++++.+.|++.++......   ..+.++++.++. +.+.
T Consensus       258 -----~~~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  327 (391)
T 3h14_A          258 -----NMFICAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPKAGFTRIAPP---DGAFYVYADVSDLTDDS  327 (391)
T ss_dssp             -----HTTCCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCC---CBTTEEEEECTTTCSCH
T ss_pred             -----hhccCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC---CeeEEEEEecCccCCCH
Confidence                 1123466666566666665  2334778889999999999999998866543221   233567778865 5688


Q ss_pred             HHHHHHHHhhCCeEEccCCCCCC---CcEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          320 SEIVRRAWQRYNLSLGLGLNKVA---GKVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       320 ~~l~~~L~~~~~i~v~~g~~~~~---~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                      .++.+.|.+++||.+.+|..+..   ++++||++..  +++++++++++|++++++...
T Consensus       328 ~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~~~~  384 (391)
T 3h14_A          328 RAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEEGLDRLEAFMQARGE  384 (391)
T ss_dssp             HHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHHhcc
Confidence            89999988766999998855432   5689998776  889999999999999987643

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=100.00  E-value=1.1e-31  Score=264.17  Aligned_cols=332  Identities=14%  Similarity=0.064  Sum_probs=255.5

Q ss_pred             cHHHHHHHHHHHHHHHhcCCC-CceE--EecCChhHHHHHHHhccCCCC--------CeEEEEcCCcchHHHHHHHHHcC
Q 015729           39 AVPALTKTLLEDIKKIFKTTS-GTPF--LIPTTGTGAWESALTNTLSPG--------DRIISFLIGQFSLLWIDQQQRLN  107 (401)
Q Consensus        39 ~~~~~~~~l~~~la~~~g~~~-~~~i--~~~~g~t~a~~~~~~~~~~~g--------d~vl~~~~~~~~~~~~~~~~~~g  107 (401)
                      .......++++.+++++|.+. ++++  ++++|+++|+..++.++..+|        |+|+++.+.|++..  ..++..|
T Consensus       136 ~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~--~~~~~~G  213 (514)
T 3mad_A          136 STAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFD--KAAQYFG  213 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHH--HHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHH--HHHHHcC
Confidence            345667788899999999872 1235  999999999999998877665        89999999888754  5677889


Q ss_pred             CcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcc----
Q 015729          108 FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI----  183 (401)
Q Consensus       108 ~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~----  183 (401)
                      ++++.++.+.++.+|+++|++++++    ++++|++++++||+|.+.|+++|.++|++  +|+++|+|++|+.+..    
T Consensus       214 ~~v~~v~~~~~~~~d~~~Le~~i~~----~~~~v~~~~~~nptG~~~~l~~i~~la~~--~~i~livDea~~~~~~~~~~  287 (514)
T 3mad_A          214 IKLVRTPLDADYRADVAAMREAITP----NTVVVAGSAPGYPHGVVDPIPEIAALAAE--HGIGCHVDACLGGFILPWAE  287 (514)
T ss_dssp             CEEEEECBCTTSCBCHHHHHHHCCT----TEEEEEEETTCTTTCCCCCHHHHHHHHHH--HTCEEEEECTTTTTTHHHHH
T ss_pred             CeeEEeeeCCCCCCCHHHHHHHhcc----CCEEEEEeCCCCCCccccCHHHHHHHHHH--hCCeEEEecccccccchhHH
Confidence            9999999998888999999999974    57999999999999999999999999999  9999999999886543    


Q ss_pred             -------eeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHH
Q 015729          184 -------DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLL  256 (401)
Q Consensus       184 -------~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  256 (401)
                             +++....++|++++|+||+++++.|+|+++++++............+.       ........+.++.+...+
T Consensus       288 ~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~gs~~~~~~  360 (514)
T 3mad_A          288 RLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWP-------GGLYFSPTFAGSRPGALS  360 (514)
T ss_dssp             HTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCT-------TCSEEESSSCSSCCHHHH
T ss_pred             hcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccC-------CCcccCCccCCCCchHHH
Confidence                   355566789999999999988888999999988775543211100000       000001122445667777


Q ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEc
Q 015729          257 YGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLG  335 (401)
Q Consensus       257 ~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~  335 (401)
                      +++.++++.+...++++..++..++++++.+.|+++ |+++..+.    . .++++.. .+.+..++.+.|.++ ||.+ 
T Consensus       361 ~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~-~~~~~~~-~~~~~~~l~~~L~~~-Gi~v-  432 (514)
T 3mad_A          361 ATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP----L-WVIAVAS-DELNIYQVMEEMAGR-GWRL-  432 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC----S-SEEEEEC-SSSCHHHHHHHHHTT-TCBC-
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC----e-EEEEEeC-CCCCHHHHHHHHHhc-CCEe-
Confidence            888999998888888999999999999999999997 88776532    2 2666765 556788999999877 9887 


Q ss_pred             cCCCCCCCcEEEEeecc-cCCHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHccCCC
Q 015729          336 LGLNKVAGKVFRIGHLG-HLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPM  396 (401)
Q Consensus       336 ~g~~~~~~~~~Ri~~~~-~~~~~di~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (401)
                      ++...  +..+|+++.. ..+++++++++++|+++++++....+.. +..++.+.+...+|.
T Consensus       433 ~g~~~--~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~~~~~-~~~~~~yg~~~~~~~  491 (514)
T 3mad_A          433 NGLHR--PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAHPEKA-TGMAPVYGMAAAAPP  491 (514)
T ss_dssp             EEETT--TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHCTTCC-CTTHHHHHHHHHSCH
T ss_pred             ccCCC--CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhCCCCC-CCceehhhhcccCCH
Confidence            44332  5679998764 4567999999999999998764333222 456788888777774

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=100.00  E-value=3.6e-32  Score=256.50  Aligned_cols=310  Identities=14%  Similarity=0.108  Sum_probs=230.9

Q ss_pred             ChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHhcC-----CCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCC
Q 015729           20 IPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKT-----TSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIG   93 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~g~-----~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~   93 (401)
                      .++.+.+++.+.... ...+.......++++.++++++.     ..++++++++|+++|+..++.+++++||+|+++.++
T Consensus        43 ~~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~  122 (370)
T 2z61_A           43 TPKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPC  122 (370)
T ss_dssp             CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSC
T ss_pred             CCHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCC
Confidence            467788777664321 11122222345677777777652     233559999999999999999889999999999999


Q ss_pred             cchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEE
Q 015729           94 QFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFL  173 (401)
Q Consensus        94 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li  173 (401)
                      |++..  ..++..|++++.++      +|++++++++++    +++++++++++||||.+.|.+ |.++|++  +|+++|
T Consensus       123 ~~~~~--~~~~~~g~~~~~v~------~d~~~l~~~l~~----~~~~v~~~~p~nptG~~~~~~-l~~~~~~--~~~~li  187 (370)
T 2z61_A          123 YPCYK--NFIRFLGAKPVFCD------FTVESLEEALSD----KTKAIIINSPSNPLGEVIDRE-IYEFAYE--NIPYII  187 (370)
T ss_dssp             CTHHH--HHHHHTTCEEEEEC------SSHHHHHHHCCS----SEEEEEEESSCTTTCCCCCHH-HHHHHHH--HCSEEE
T ss_pred             chhHH--HHHHHcCCEEEEeC------CCHHHHHHhccc----CceEEEEcCCCCCcCcccCHH-HHHHHHH--cCCEEE
Confidence            88765  45677899998887      689999999863    578999999999999999999 9999999  999999


Q ss_pred             EecccccCcc---eeccC----cccceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcC
Q 015729          174 VDGVSSICAI---DFRMD----EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG  244 (401)
Q Consensus       174 ~D~a~~~~~~---~~~~~----~~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  244 (401)
                      +|++|+.+..   +.+..    ..+.|+++.|.||+++ ++|  +|++++++++.+.+....             .   +
T Consensus       188 ~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~-------------~---~  250 (370)
T 2z61_A          188 SDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYA-MTGWRIGYVISNDEIIEAILKLQ-------------Q---N  250 (370)
T ss_dssp             EECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHH-------------H---H
T ss_pred             EEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccC-CccceEEEEEECHHHHHHHHHHH-------------h---h
Confidence            9999986543   12222    2367999999999984 455  799999998877664320             0   0


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHH
Q 015729          245 TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVR  324 (401)
Q Consensus       245 ~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  324 (401)
                        +.++++...++++.++++.....++++.++++.++++++.+.|+++|+++..+    ..+.++++.+++  +..++.+
T Consensus       251 --~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~~~~~--~~~~~~~  322 (370)
T 2z61_A          251 --LFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVNNP----IGAYYVFPNIGE--DGREFAY  322 (370)
T ss_dssp             --HTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCC----CBTTEECCBCSS--CHHHHHH
T ss_pred             --cccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCC----CcceEEEEecCC--CHHHHHH
Confidence              12246666666666666542233467788899999999999999888776543    234566677754  6788999


Q ss_pred             HHHhhCCeEEccCCCCC--CCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          325 RAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       325 ~L~~~~~i~v~~g~~~~--~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      .|.+++||.+.+|..+.  ..+++||++.  .+++++++++++|+++++
T Consensus       323 ~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          323 KLLKEKFVALTPGIGFGSKGKNYIRISYA--NSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             HHHHHHCEECEEGGGGCGGGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred             HHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence            99744499999885432  2568999877  599999999999998874

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=100.00  E-value=1.2e-31  Score=254.24  Aligned_cols=318  Identities=19%  Similarity=0.169  Sum_probs=230.1

Q ss_pred             CChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      +.++.+.+++.+.... ...+.......++++.+++++    |.+ .++++++++|+++|+..++.+++++||+|+++.|
T Consensus        44 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p  123 (385)
T 1b5p_A           44 DTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSP  123 (385)
T ss_dssp             CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCC
Confidence            4456777776553211 111221223456777777666    432 3356999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcC
Q 015729           93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR  167 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~  167 (401)
                      +|+++.  ..++..|++++.++.+.  ++.+|++++++++++    +++++++++|+||||.+++   +++|.++|++  
T Consensus       124 ~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~--  195 (385)
T 1b5p_A          124 YWVSYP--EMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP----RTKALVVNSPNNPTGAVYPKEVLEALARLAVE--  195 (385)
T ss_dssp             CCTHHH--HHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--
T ss_pred             CchhHH--HHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCC----CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHH--
Confidence            887654  56778899999999875  446899999998863    5799999999999999987   7889999999  


Q ss_pred             CCcEEEEecccccCcc---eeccCcc--cceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHH
Q 015729          168 HPALFLVDGVSSICAI---DFRMDEW--GIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKF  240 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~---~~~~~~~--~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
                      +|++||+|++|+.+..   ..++...  +.++++.|.+|+++ ++|  +|++++++++.+.+....              
T Consensus       196 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~RiG~~~~~~~~~~~l~~~~--------------  260 (385)
T 1b5p_A          196 HDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFA-MTGWRIGYACGPKEVIKAMASVS--------------  260 (385)
T ss_dssp             TTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHH--------------
T ss_pred             cCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcC-CcccceEEEEeCHHHHHHHHHHH--------------
Confidence            9999999999875432   1122222  56899999999884 555  799999998877654310              


Q ss_pred             hhcCCCCCCCCcHHHHHHHHHHHHH---HHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcC-CC
Q 015729          241 YNLGTFWPYTPSIQLLYGLRAALDL---IFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVP-SH  316 (401)
Q Consensus       241 ~~~g~~~~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~~  316 (401)
                       ..+   ..+++.....++.++++.   . ...+++.++++.++++++.+.|+++|+++..+.    .+.++++.++ .+
T Consensus       261 -~~~---~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~~~~~~~~~~~~~  331 (385)
T 1b5p_A          261 -RQS---TTSPDTIAQWATLEALTNQEAS-RAFVEMAREAYRRRRDLLLEGLTALGLKAVRPS----GAFYVLMDTSPIA  331 (385)
T ss_dssp             -HTT---TCSCCHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCS----BTTEEEEECTTTC
T ss_pred             -hhc---cCCCCHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC----eeEEEEEecCCCC
Confidence             001   223455555555556643   2 223677888899999999999988887766542    3346667775 24


Q ss_pred             CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          317 INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       317 ~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      .+..++.+.|.+ .||.+.+|..+..++++||++.  .+++++++++++|+++++
T Consensus       332 ~~~~~l~~~l~~-~gv~v~~g~~f~~~~~iRis~~--~~~~~i~~~l~~l~~~l~  383 (385)
T 1b5p_A          332 PDEVRAAERLLE-AGVAVVPGTDFAAFGHVRLSYA--TSEENLRKALERFARVLG  383 (385)
T ss_dssp             SSHHHHHHHHHH-TTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred             CCHHHHHHHHHH-CCeEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence            678899999984 4999999855433679999876  589999999999987654

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=100.00  E-value=4.1e-31  Score=251.01  Aligned_cols=326  Identities=11%  Similarity=0.077  Sum_probs=240.3

Q ss_pred             CcCChHHHHHHHccCcCC---CCCccHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           17 PVHIPDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      +.+.++.+++++.+....   .+.....+..+++.+.+++.+|.+ .++.+++++|+++|+..++.+++++||+|+++.+
T Consensus        38 ~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~  117 (391)
T 3dzz_A           38 DFKIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEP  117 (391)
T ss_dssp             SSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             CCCCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhCCCCCeEEECCC
Confidence            345677888887774432   222234666777888888888743 3345999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHcCCcEEEEeCCC-C--CCCChHHHHHHHhccCCCCceEEEEEecCCCccccc---chHHHHHHhhhc
Q 015729           93 GQFSLLWIDQQQRLNFNVDVVESDW-G--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN---NLSKVRKLLDEY  166 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v~~~~-~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~---~l~~i~~l~~~~  166 (401)
                      +|++..  ..++..|++++.++.+. +  +.+|++++++++++   ++++++++++++||||.++   ++++|.++|++ 
T Consensus       118 ~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~-  191 (391)
T 3dzz_A          118 VYNMFY--SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT---PSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAK-  191 (391)
T ss_dssp             CCHHHH--HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS---TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHH-
T ss_pred             CcHHHH--HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc---cCceEEEEECCCCCCCcccCHHHHHHHHHHHHH-
Confidence            888754  56778899999998852 2  23899999999974   3679999999999999995   57889999999 


Q ss_pred             CCCcEEEEecccccCcc----eeccCccc---ce--EEEecCCCccc-CCCcceEEEec-HHHHHHhccCCCCccccchH
Q 015729          167 RHPALFLVDGVSSICAI----DFRMDEWG---ID--VALTGSQKALS-LPTGMGIVCAS-PKALEASKTAKSVRVFFDWK  235 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~----~~~~~~~~---~d--i~~~s~~K~l~-g~~g~G~l~~~-~~~~~~~~~~~~~~~~~~~~  235 (401)
                       +|+++|+|++|+.+..    ........   .|  +++.|.||+++ ++.++|+++++ +++.+.+....         
T Consensus       192 -~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~---------  261 (391)
T 3dzz_A          192 -HQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESF---------  261 (391)
T ss_dssp             -TTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHH---------
T ss_pred             -CCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHH---------
Confidence             9999999999985432    12222222   44  99999999984 34557999987 87766654310         


Q ss_pred             HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCceeEEEEc
Q 015729          236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVIV  313 (401)
Q Consensus       236 ~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~  313 (401)
                         ...  +   .++++...++++.++++.. ...+++.++++.++++++.+.|++ + |+++..+.    .+.++++.+
T Consensus       262 ---~~~--~---~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~  328 (391)
T 3dzz_A          262 ---FLA--G---IGEPNLLAIPAAIAAYEEG-HDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSN----ASYLAWVDI  328 (391)
T ss_dssp             ---HHH--T---CSSCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCC----BSSEEEEEC
T ss_pred             ---Hhh--c---cCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccC----ceEEEEEeh
Confidence               000  1   1234555556666666542 223678889999999999999998 4 88776542    345667787


Q ss_pred             CC-CCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          314 PS-HINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       314 ~~-~~~~~~l~~~L~~~~~i~v~~g~~~~--~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +. +.+..++.+.|.+++||.+.+|..+.  ..+++||++.  .+++++++++++|+++++++
T Consensus       329 ~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~~  389 (391)
T 3dzz_A          329 SALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA--CPKELVIDGMQRLKQGVLNL  389 (391)
T ss_dssp             GGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC--SCHHHHHHHHHHHHHHHHTC
T ss_pred             hhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence            64 46888999999744499999885432  3478999877  48999999999999999865

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=5.9e-32  Score=256.81  Aligned_cols=314  Identities=19%  Similarity=0.158  Sum_probs=232.1

Q ss_pred             CChHHHHHHHccCcCCC-CCccHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           19 HIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      +.++.+.+++.+..... ..+.......++++.+++++    |.+ .++++++++|+++|+..++.+++++||+|+++.+
T Consensus        54 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~  133 (389)
T 1o4s_A           54 PTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSP  133 (389)
T ss_dssp             CCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCC
Confidence            45677887776643221 11221223456777777766    653 3456999999999999999888999999999999


Q ss_pred             CcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcC
Q 015729           93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR  167 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~  167 (401)
                      +|++..  ..++..|++++.++.+.  ++.+|++++++++++    +++++++++++||||.++|   +++|.++|++  
T Consensus       134 ~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~--  205 (389)
T 1o4s_A          134 VWVSYI--PQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG----KTKAVLINSPNNPTGVVYRREFLEGLVRLAKK--  205 (389)
T ss_dssp             CCTTHH--HHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--
T ss_pred             CchhHH--HHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc----CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHH--
Confidence            988764  45677899999999875  456899999998863    5789999999999999987   8889999999  


Q ss_pred             CCcEEEEecccccCcce---e---ccCc-ccceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHH
Q 015729          168 HPALFLVDGVSSICAID---F---RMDE-WGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYI  238 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~~---~---~~~~-~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (401)
                      +|+++|+|++|+.+...   .   .... .+.|+++.|.||+++ ++|  +|++++++++.+.+....            
T Consensus       206 ~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~l~~~~~~~~~l~~~~------------  272 (389)
T 1o4s_A          206 RNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHS-MTGWRVGYLISSEKVATAVSKIQ------------  272 (389)
T ss_dssp             HTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHH------------
T ss_pred             cCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcC-CcccceEEEEeCHHHHHHHHHHh------------
Confidence            99999999999865431   1   1111 468999999999984 455  799999998877664310            


Q ss_pred             HHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCC
Q 015729          239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN  318 (401)
Q Consensus       239 ~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  318 (401)
                      ..   +   .++.+...+.++.++++   . ++++.++++.++++++.+.|+++|+++..+    ..+.++++.++  .+
T Consensus       273 ~~---~---~~~~~~~~~~a~~~~l~---~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~~~~--~~  336 (389)
T 1o4s_A          273 SH---T---TSCINTVAQYAALKALE---V-DNSYMVQTFKERKNFVVERLKKMGVKFVEP----EGAFYLFFKVR--GD  336 (389)
T ss_dssp             HH---H---TCSCCHHHHHHHHHHTT---C-CCHHHHHHHHHHHHHHHHHHHHTTCCCCCC----SBSSEEEEECS--SC
T ss_pred             hh---c---ccCCCHHHHHHHHHHHh---c-cHHHHHHHHHHHHHHHHHHHHhcCCeeecC----CcceEEEEeCC--CC
Confidence            00   1   12244443333333332   2 367889999999999999999888776543    23456777875  56


Q ss_pred             HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          319 SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      ..++.+.|.++.||.+.++.....++++||++..  +++++++++++|+++++
T Consensus       337 ~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~  387 (389)
T 1o4s_A          337 DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFAT--SIERLTEALDRIEDFLN  387 (389)
T ss_dssp             HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS--CHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeC--CHHHHHHHHHHHHHHHh
Confidence            7889999974449999988544335699998774  99999999999998874

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=100.00  E-value=6.4e-32  Score=257.87  Aligned_cols=321  Identities=11%  Similarity=0.008  Sum_probs=237.2

Q ss_pred             CChHHHHHHHccCcCCC--CCccHHHHHHHHHHHHHHHh----cCC-CC-ceEEecCChhHHHHHHHhccCCCCCeEEEE
Q 015729           19 HIPDQVIRAMNRNNEDY--RSPAVPALTKTLLEDIKKIF----KTT-SG-TPFLIPTTGTGAWESALTNTLSPGDRIISF   90 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~----g~~-~~-~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   90 (401)
                      ..++.+.+++.+.....  ..+.......++++.+++++    |.+ .+ +++++++|+++|+..++.+++++||+|+++
T Consensus        60 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~  139 (404)
T 2o1b_A           60 PTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLP  139 (404)
T ss_dssp             CCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEc
Confidence            45688888887754210  01111123456777777776    875 22 459999999999999999989999999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhc
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY  166 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~  166 (401)
                      .++|++..  ..++..|++++.++.+. +..+|+++++++++.    +++++++++++||||.++|   +++|.++|++ 
T Consensus       140 ~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~-  212 (404)
T 2o1b_A          140 DPGYTDYL--AGVLLADGKPVPLNLEPPHYLPDWSKVDSQIID----KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKG-  212 (404)
T ss_dssp             ESCCSSHH--HHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHH----HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTT-
T ss_pred             CCCchhHH--HHHHHCCCEEEEeccCcccCcCCHHHHHHhhcc----CceEEEEcCCCCCCCccCCHHHHHHHHHHHHH-
Confidence            99988765  45677899999999876 335799999998863    5689999999999999986   6778899999 


Q ss_pred             CCCcEEEEecccccCcc---eeccC----cccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHH
Q 015729          167 RHPALFLVDGVSSICAI---DFRMD----EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYI  238 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~---~~~~~----~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (401)
                       +|++||+|++|+.+..   +.+..    ..+.++++.|.+|+++ ++.++|++++++++.+.+...             
T Consensus       213 -~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~-------------  278 (404)
T 2o1b_A          213 -TDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQALKKY-------------  278 (404)
T ss_dssp             -SSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHH-------------
T ss_pred             -cCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEecCHHHHHHHHHH-------------
Confidence             9999999999986432   11221    1256899999999984 233479999999987766431             


Q ss_pred             HHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCC
Q 015729          239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN  318 (401)
Q Consensus       239 ~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  318 (401)
                      ...     +.++.+...++++.++++.. ...+++.++++.++++++.+.|++.|+++..+    ..+.++++.++++.+
T Consensus       279 ~~~-----~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~g~~~~~~~~~~~~  348 (404)
T 2o1b_A          279 QTH-----TNAGMFGALQDAAIYALNHY-DDFLEEQSNVFKTRRDRFEAMLAKADLPFVHA----KGGIYVWLETPPGYD  348 (404)
T ss_dssp             HHH-----HCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCEECC----CBSSEEEEECCTTCC
T ss_pred             Hhh-----ccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCeecCC----CcceEEEEeCCCCCC
Confidence            000     12245665556666666542 23467788889999999999999888776543    245568888876677


Q ss_pred             HHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          319 SSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~~~--~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      ..++.+.|.++.||.+.+|..+.  .++++||++..  +++++++++++|++++++
T Consensus       349 ~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~e~l~~~l~~l~~~l~~  402 (404)
T 2o1b_A          349 SEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL--DDQKLDEAAIRLTELAYL  402 (404)
T ss_dssp             HHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred             HHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence            88899998754599999885432  25789998875  788999999999988765

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=263.19  Aligned_cols=332  Identities=10%  Similarity=0.042  Sum_probs=244.8

Q ss_pred             cHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHhccCC-----CC---CeEEEEcCCcchHHHHHHHHHcCCc
Q 015729           39 AVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLS-----PG---DRIISFLIGQFSLLWIDQQQRLNFN  109 (401)
Q Consensus        39 ~~~~~~~~l~~~la~~~g~~-~~~~i~~~~g~t~a~~~~~~~~~~-----~g---d~vl~~~~~~~~~~~~~~~~~~g~~  109 (401)
                      ...+...++++.+++++|.+ .+.++++++|+++|+..++.++.+     +|   |+|+++.+.|+++.  ..++..|++
T Consensus       104 ~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~--~~~~~~G~~  181 (497)
T 3mc6_A          104 AVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFD--KAAYYFGMK  181 (497)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHH--HHHHHSCCE
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHH--HHHHHcCCe
Confidence            34567778999999999998 445699999999999998877643     45   89999999887754  667888999


Q ss_pred             EEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcc-----
Q 015729          110 VDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-----  183 (401)
Q Consensus       110 ~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~-----  183 (401)
                      ++.++.+. ++.+|++++++++++    ++++|++++++||+|.+.|+++|.++|++  +|+++|+|++|+.+..     
T Consensus       182 ~~~v~~~~~~~~~d~~~l~~~i~~----~~~~v~~~~p~nptG~~~~l~~i~~la~~--~g~~livD~a~~~~~~~f~~~  255 (497)
T 3mc6_A          182 LRHVELDPTTYQVDLGKVKKFINK----NTVLLVGSAPNFPHGIADDIEGLGKIAQK--YKLPLHVDSCLGSFIVSFMEK  255 (497)
T ss_dssp             EEEECBCTTTCSBCTTTTGGGCCS----SEEEEEEETTCTTTCCCCSCTTTTTHHHH--TTCCEEEETTTTHHHHGGGTT
T ss_pred             EEEEecCcccCcCCHHHHHHHHhh----CCEEEEEECCCCCCCcCCCHHHHHHHHHH--hCCEEEEECcchhhhhhhhhh
Confidence            99999987 678999999999874    56999999999999999999999999999  9999999999974332     


Q ss_pred             -------eeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHH
Q 015729          184 -------DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLL  256 (401)
Q Consensus       184 -------~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  256 (401)
                             +++....++|++++|+||+++++.|+|+++++++.+..........+..      ..+ ....+.++.+...+
T Consensus       256 ~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~g~~~~~~~  328 (497)
T 3mc6_A          256 AGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTG------GLY-GSPTLAGSRPGAIV  328 (497)
T ss_dssp             TTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTT------SCB-CCSSSCSSCBHHHH
T ss_pred             hcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccC------CCc-CCcCcccCCcchhH
Confidence                   3556667899999999999888999999999887765443211111000      000 01112334556667


Q ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEE
Q 015729          257 YGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSL  334 (401)
Q Consensus       257 ~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v  334 (401)
                      +++.++++.+...++++..++..++++++++.|++ + |+++..+.    ...++.+.. .+.+..++.+.|.++ ||.+
T Consensus       329 ~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~----~~~~v~~~~-~~~~~~~l~~~L~~~-Gi~v  402 (497)
T 3mc6_A          329 VGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNP----RYSVISFSS-KTLNIHELSDRLSKK-GWHF  402 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCC----CSSEEEEEC-TTTTHHHHHHHHHTT-TCBC
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC----CeeEEEEeC-CCCCHHHHHHHHHhC-CEEE
Confidence            88999999888888899999999999999999999 4 88876531    223566665 456788999999877 9887


Q ss_pred             ccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCCCCCcc--hHHHHHHHHHHccCC
Q 015729          335 GLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLG--SGVAAASAYLQNNIP  395 (401)
Q Consensus       335 ~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~  395 (401)
                      ..+..   ...+|+++. ..+++|+++++++|+++++++....+..  ....++.+.....+|
T Consensus       403 ~~~~~---~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~  461 (497)
T 3mc6_A          403 NALQK---PVALHMAFT-RLSAHVVDEICDILRTTVQELKSESNSKPSPDGTSALYGVAGSVK  461 (497)
T ss_dssp             EECCS---SCCEEEECC-TTTTCTHHHHHHHHHHHHHHHTCC---------------------
T ss_pred             ecCCC---CCeEEEEEe-CCCHHHHHHHHHHHHHHHHHHHhCcCcCCCCCCCCccccccccCC
Confidence            75543   235788776 6899999999999999998875543332  223344444444444

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.6e-31  Score=255.81  Aligned_cols=324  Identities=13%  Similarity=0.093  Sum_probs=238.0

Q ss_pred             CChHHHHHHHccCcCCC--CCccHHHHHHHHHHHHHHHh----cCC-CC-ceEEecCChhHHHHHHHhccCCCCCeEEEE
Q 015729           19 HIPDQVIRAMNRNNEDY--RSPAVPALTKTLLEDIKKIF----KTT-SG-TPFLIPTTGTGAWESALTNTLSPGDRIISF   90 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~----g~~-~~-~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   90 (401)
                      ..++.+.+++.+.....  ..+.......++++.+++++    |.+ .+ +++++++|+++|+..++.+++++||+|+++
T Consensus        50 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~  129 (412)
T 2x5d_A           50 PTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVP  129 (412)
T ss_dssp             CCCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEc
Confidence            46788888888755321  11221233567888888877    753 22 459999999999999999889999999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeCCCCC--CCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhh
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVESDWGE--GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE  165 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~  165 (401)
                      .++|+++.  ..++..|++++.++.+.+.  .+|+++++++++    ++++++++++++||||.+++   +++|.++|++
T Consensus       130 ~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~  203 (412)
T 2x5d_A          130 NPSYPIHI--YGAVIAGAQVRSVPLVPGIDFFNELERAIRESI----PKPRMMILGFPSNPTAQCVELDFFERVVALAKQ  203 (412)
T ss_dssp             ESCCHHHH--HHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEE----SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             CCCchhHH--HHHHHcCCEEEEeecCCccCCCCCHHHHHHhcc----cCceEEEECCCCCCCCCcCCHHHHHHHHHHHHH
Confidence            99888764  4566789999999987642  368899998886    35689999999999999987   5779999999


Q ss_pred             cCCCcEEEEecccccCcc----ee---ccCc-ccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHH
Q 015729          166 YRHPALFLVDGVSSICAI----DF---RMDE-WGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKD  236 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~~----~~---~~~~-~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~  236 (401)
                        +|+++|+|++|+.+..    ..   .... .+.++++.|.||+++ ++.++|++++++++.+.+...           
T Consensus       204 --~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~-----------  270 (412)
T 2x5d_A          204 --YDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARI-----------  270 (412)
T ss_dssp             --HTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEECHHHHHHHHHH-----------
T ss_pred             --cCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEcCHHHHHHHHHH-----------
Confidence              9999999999986542    11   1211 467899999999995 333479999999987766531           


Q ss_pred             HHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCC
Q 015729          237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH  316 (401)
Q Consensus       237 ~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~  316 (401)
                        ...     ..++.+...++++.++++.. ...+++.+++++++++++.+.|++.|+++..+    ..+.++++.+|++
T Consensus       271 --~~~-----~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~g~~~~~~~~~~  338 (412)
T 2x5d_A          271 --KSY-----HDYGTFTPLQVAAIAALEGD-QQCVRDIARQYQQRRDVLVKGLREAGWMVENP----KASMYVWAKIPEP  338 (412)
T ss_dssp             --HHH-----HCCCCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC----SBSSEEEEECCTT
T ss_pred             --Hhh-----hccCCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCEecCC----CeeeEEEEEcCCc
Confidence              000     12245665555555555432 12367788889999999999999888776543    2345788888766


Q ss_pred             C---CHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          317 I---NSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       317 ~---~~~~l~~~L~~~~~i~v~~g~~~~--~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                      .   +..++.+.|.+++||.+.+|..+.  .++++||++..  +++++++++++|++++++++.
T Consensus       339 ~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~~  400 (412)
T 2x5d_A          339 YAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQAVRGIKAMFRADGL  400 (412)
T ss_dssp             TGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhcCC
Confidence            5   678899998765599999885432  35789998876  899999999999999988754

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=100.00  E-value=3.1e-31  Score=250.53  Aligned_cols=317  Identities=16%  Similarity=0.130  Sum_probs=236.3

Q ss_pred             HHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHH
Q 015729           22 DQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWID  101 (401)
Q Consensus        22 ~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~  101 (401)
                      +++++++......   +.......++++.++++++.-.++.+++++|+++|+..++.+++++||+|+++.++|++..  .
T Consensus        46 ~~~~~~~~~~~~~---y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~--~  120 (375)
T 3op7_A           46 EDFYKKLQGTKLN---YGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLY--D  120 (375)
T ss_dssp             HHHHHHHHTSCCS---SCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHH--H
T ss_pred             HHHHHHHhcCCcC---CCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHH--H
Confidence            4566666553322   2223345689999999985333345999999999999999999999999999999888764  4


Q ss_pred             HHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEEEEec
Q 015729          102 QQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDG  176 (401)
Q Consensus       102 ~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li~D~  176 (401)
                      .++..|++++.++.+.+  +.+|++++++++++    ++++|++++++||||.+.|   +++|.++|++  +|+++|+|+
T Consensus       121 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~--~~~~li~De  194 (375)
T 3op7_A          121 IPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRP----TTKMICINNANNPTGAVMDRTYLEELVEIASE--VGAYILSDE  194 (375)
T ss_dssp             HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT----TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHT--TTCEEEEEC
T ss_pred             HHHHcCCEEEEEeccccCCCCCCHHHHHHhhcc----CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHH--cCCEEEEEc
Confidence            57788999999998643  34799999999973    6799999999999999999   8999999999  999999999


Q ss_pred             ccccCcce---eccCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCc
Q 015729          177 VSSICAID---FRMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPS  252 (401)
Q Consensus       177 a~~~~~~~---~~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  252 (401)
                      +|+.+...   .-.+..+.++++.|.+|+++ ++.++|++++++++.+.+.....                  ++..+++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~------------------~~~~~~~  256 (375)
T 3op7_A          195 VYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRD------------------YTMICAG  256 (375)
T ss_dssp             CSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGG------------------GTTSCCC
T ss_pred             ccccccccCCCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHh------------------hhccCCC
Confidence            98864332   11122356788999999995 23446999999999887764321                  1123455


Q ss_pred             HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCC
Q 015729          253 IQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYN  331 (401)
Q Consensus       253 ~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  331 (401)
                      ....+++.++++... ..+++.++++.++.+.+.+.|++. ++.+..+.    .+.+.++.++.+.+..++++.|.+++|
T Consensus       257 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ll~~~g  331 (375)
T 3op7_A          257 VFDDLVAQLALAHYQ-EILERNRHILEENLAILDQWIEEEPLVSYIRPA----VVSTSFVKIAVDMPMEDFCLQLLQEHG  331 (375)
T ss_dssp             HHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCS----SSSCEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHhhCCCceEecCC----CeEEEeEEcCCCCCHHHHHHHHHHhCC
Confidence            555555666666432 235677788889999999999886 66655432    234556667666678899888865559


Q ss_pred             eEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          332 LSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       332 i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      |.+.+|......+++|+++..  +.+++++++++|+++++++.
T Consensus       332 i~v~~g~~~~~~~~iRi~~~~--~~~~i~~~l~~l~~~l~~~~  372 (375)
T 3op7_A          332 VLLVPGNRFERDGYVRLGFAC--EQETLIKGLEKLSQFLRRFD  372 (375)
T ss_dssp             EECEEGGGGTCTTEEEECCCS--CHHHHHHHHHHHHHHHGGGC
T ss_pred             EEEeChhhhCCCCeEEEEecC--CHHHHHHHHHHHHHHHHHHh
Confidence            999988654457899998765  56999999999999997653

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=100.00  E-value=1.5e-31  Score=253.31  Aligned_cols=316  Identities=18%  Similarity=0.175  Sum_probs=236.5

Q ss_pred             CChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH
Q 015729           19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL   98 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~   98 (401)
                      +.++.+.+++.+.......+.......++++.++++++.++++ +++++|+++|+..++.+++++||+|+++.++|++..
T Consensus        38 ~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~~~-v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~  116 (381)
T 1v2d_A           38 PPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEEFAVEPES-VVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYL  116 (381)
T ss_dssp             CCCHHHHHHHHHHTTTSCSCCCTTCCHHHHHHHHHHHTSCGGG-EEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhcCCChhh-EEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHH
Confidence            3567777777664432111222234678999999999987544 999999999999999888999999999999988765


Q ss_pred             HHHHHHHcCCcEEEEeCC---CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEE
Q 015729           99 WIDQQQRLNFNVDVVESD---WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALF  172 (401)
Q Consensus        99 ~~~~~~~~g~~~~~v~~~---~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~l  172 (401)
                        ..++..|++++.++.+   .++.+|++++++.++    ++++++++++++||||.++|   +++|.++|++  +|+++
T Consensus       117 --~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~--~~~~l  188 (381)
T 1v2d_A          117 --PDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT----PRTRALLLNTPMNPTGLVFGERELEAIARLARA--HDLFL  188 (381)
T ss_dssp             --HHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--TTCEE
T ss_pred             --HHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcC----cCCEEEEECCCCCCCCCccCHHHHHHHHHHHHH--cCCEE
Confidence              4577889999999986   456789999999886    36799999999999999986   7889999999  99999


Q ss_pred             EEecccccCcc---eeccC--cccceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCC
Q 015729          173 LVDGVSSICAI---DFRMD--EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGT  245 (401)
Q Consensus       173 i~D~a~~~~~~---~~~~~--~~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  245 (401)
                      |+|++|+.+..   ..++.  ..+.|+++.|.||+++ ++|  +|++++++++.+.+...             ....   
T Consensus       189 i~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~-------------~~~~---  251 (381)
T 1v2d_A          189 ISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLE-ATGYRVGWIVGPKEFMPRLAGM-------------RQWT---  251 (381)
T ss_dssp             EEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTT-CGGGCCEEEECCTTTHHHHHHH-------------HHHH---
T ss_pred             EEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcC-CcccceEEEEeCHHHHHHHHHH-------------Hhhc---
Confidence            99999985432   11222  3468999999999884 445  79999998877665421             1111   


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHH-HhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHH
Q 015729          246 FWPYTPSIQLLYGLRAALDLIF-EEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVR  324 (401)
Q Consensus       246 ~~~~~~~~~~~~a~~~al~~~~-~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  324 (401)
                        .++++...++++.++++... ..++++.++++.++++++.+.|++.|+++..+.    .+.++++.+++. +   +.+
T Consensus       252 --~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~~~~~~~~~~~~-~---~~~  321 (381)
T 1v2d_A          252 --SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPE----GTYFLMAELPGW-D---AFR  321 (381)
T ss_dssp             --TSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCS----BSSEEEEECTTC-C---HHH
T ss_pred             --ccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCC----cceEEEEecChH-h---HHH
Confidence              22456666667777777543 334778899999999999999999888776542    345777888643 2   555


Q ss_pred             HHHhhCCeEEccCCCCC----CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          325 RAWQRYNLSLGLGLNKV----AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       325 ~L~~~~~i~v~~g~~~~----~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .|. ++||.+.++..+.    .++++||++..  +++++++++++|++++++.
T Consensus       322 ~l~-~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~  371 (381)
T 1v2d_A          322 LVE-EARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVNSP  371 (381)
T ss_dssp             HHH-HTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC---
T ss_pred             HHH-hCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhc
Confidence            554 4599999885432    35789998766  9999999999999988653

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=100.00  E-value=4.6e-31  Score=250.50  Aligned_cols=321  Identities=13%  Similarity=0.109  Sum_probs=231.5

Q ss_pred             CChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      +.++.+.+++.+.... ...+.......++++.+++++    |.+ .++++++++|+++|+..++.+++++||+|+++.+
T Consensus        43 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~  122 (388)
T 1j32_A           43 NTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAP  122 (388)
T ss_dssp             CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESS
T ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCC
Confidence            4567777777664311 111211122345555555554    543 3356999999999999999988999999999999


Q ss_pred             CcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcC
Q 015729           93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR  167 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~  167 (401)
                      +|++..  ..++..|++++.++.+.  ++.+|++++++++++    +++++++++++||||.++|   +++|.++|++  
T Consensus       123 ~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~--  194 (388)
T 1j32_A          123 FWVSYP--EMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP----KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVE--  194 (388)
T ss_dssp             CCTHHH--HHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--
T ss_pred             CChhHH--HHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCc----CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHH--
Confidence            988764  45677899999999875  456899999999873    5799999999999999975   8889999999  


Q ss_pred             CCcEEEEecccccCcce-------eccC--cccceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHH
Q 015729          168 HPALFLVDGVSSICAID-------FRMD--EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKD  236 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~~-------~~~~--~~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~  236 (401)
                      +|+++|+|++|+.+...       ..+.  ..+.|+++.|.||++ +++|  +|++++++++.+.+....          
T Consensus       195 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~-~~~G~r~G~~~~~~~~~~~l~~~~----------  263 (388)
T 1j32_A          195 AGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY-AMTGWRVGFLAGPVPLVKAATKIQ----------  263 (388)
T ss_dssp             HTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT-TCTTTCCEEEECCHHHHHHHHHHH----------
T ss_pred             cCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhcc-CCcccceEEEEeCHHHHHHHHHHH----------
Confidence            99999999998864321       1111  145799999999998 4555  899999998877664310          


Q ss_pred             HHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCC
Q 015729          237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS  315 (401)
Q Consensus       237 ~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~  315 (401)
                           ..+   .++.+.....++.++++.. ...+++.++++.++++++.+.|+++ |+++..+.    .+.++++.++.
T Consensus       264 -----~~~---~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~~~~~~~~~~~  330 (388)
T 1j32_A          264 -----GHS---TSNVCTFAQYGAIAAYENS-QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPD----GAFYMFPSIAK  330 (388)
T ss_dssp             -----HTT---TCSCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCC----BTTEECCBCGG
T ss_pred             -----hhc---ccCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCC----eeEEEEEecCC
Confidence                 001   2234444444444444421 2236778888999999999999987 87765532    33456666643


Q ss_pred             -CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          316 -HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       316 -~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                       +.+..++.+.|.+++||.+.+|.....++++||++.  .+++++++++++|+++++++
T Consensus       331 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~l~~~  387 (388)
T 1j32_A          331 TGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             GTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence             457888999998645999998854434678999875  58999999999999988754

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=100.00  E-value=1.2e-30  Score=242.85  Aligned_cols=306  Identities=12%  Similarity=0.054  Sum_probs=232.3

Q ss_pred             CCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcc
Q 015729           16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF   95 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~   95 (401)
                      .|.++++.+.+++.+.......+ ......++++.+++++|.++. .+++++|+++++..++..+  +||+|+++.++|+
T Consensus        26 ~~~~~~~~v~~a~~~~~~~~~~y-~~~~~~~lr~~la~~~~~~~~-~i~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~  101 (337)
T 3p1t_A           26 NPEAVEPRVQAAIAAAAARINRY-PFDAEPRVMRKLAEHFSCPED-NLMLVRGIDECFDRISAEF--SSMRFVTAWPGFD  101 (337)
T ss_dssp             CCSCCCHHHHHHHHHHGGGTTSC-CTTHHHHHHHHHHHHHTSCGG-GEEEESHHHHHHHHHHHHS--TTSEEEEESSSCS
T ss_pred             CCCCCCHHHHHHHHHhhhhhccC-CCCchHHHHHHHHHHhCcCHH-HEEEeCCHHHHHHHHHHhc--CCCeEEEeCCCcH
Confidence            47778899999988855433223 235678999999999998754 4999999999999988776  8999999999888


Q ss_pred             hHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEe
Q 015729           96 SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD  175 (401)
Q Consensus        96 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D  175 (401)
                      ++.  ..++..|++++.++.+.++.+|++++++.      .+++++++++++||||.+.|++++.++|++  +++ +|+|
T Consensus       102 ~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~--~~~-~ivD  170 (337)
T 3p1t_A          102 GYR--ARIAVSGLRHFEIGLTDDLLLDPNDLAQV------SRDDCVVLANPSNPTGQALSAGELDQLRQR--AGK-LLID  170 (337)
T ss_dssp             HHH--HHHTTSCCEEEEECBCTTSSBCHHHHTTC------CTTEEEEEESSCTTTCCCCCHHHHHHHHHH--CSE-EEEE
T ss_pred             HHH--HHHHHcCCEEEEecCCCCCCCCHHHHHhh------cCCCEEEEeCCCCCCCCCCCHHHHHHHHHh--CCc-EEEE
Confidence            764  56778899999999988888999998865      246899999999999999999999999999  886 5669


Q ss_pred             cccccCcc--eeccCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCc
Q 015729          176 GVSSICAI--DFRMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPS  252 (401)
Q Consensus       176 ~a~~~~~~--~~~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  252 (401)
                      ++|+....  .......+.++++.|.+|+++ .+.++|+++.++++.+.+....                    ..++++
T Consensus       171 ea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~--------------------~~~~~~  230 (337)
T 3p1t_A          171 ETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQ--------------------WFCNVG  230 (337)
T ss_dssp             CTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTTS--------------------CTTCSC
T ss_pred             CCChhhccccccccccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhhc--------------------CCCCCC
Confidence            99873221  112223357899999999995 3455699999999888775431                    123456


Q ss_pred             HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCe
Q 015729          253 IQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNL  332 (401)
Q Consensus       253 ~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i  332 (401)
                      ...+.++.++++..  ..+++.+++..++++++.+.|+++|+++..+.    . .++++..++   ..++.+.|.++ ||
T Consensus       231 ~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~-~~~~~~~~~---~~~~~~~l~~~-gi  299 (337)
T 3p1t_A          231 TLDLHALEAALDND--RAREAHIAKTLAQRRRVADALRGLGYRVASSE----A-NFVLVENAA---GERTLRFLRER-GI  299 (337)
T ss_dssp             HHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCS----S-SEEEEECTT---THHHHHHHHHT-TE
T ss_pred             HHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHCcCEECCCC----C-eEEEEEcCC---HHHHHHHHHHC-Ce
Confidence            65555555555431  12566777778888999999998887765432    2 356666643   45777777655 99


Q ss_pred             EEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          333 SLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       333 ~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      .+.+|..+..++++||++.   +++|+++++++|++++
T Consensus       300 ~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~~~  334 (337)
T 3p1t_A          300 QVKDAGQFGLHHHIRISIG---REEDNDRLLAALAEYS  334 (337)
T ss_dssp             ECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred             EEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHh
Confidence            9999876555689999864   7999999999998875

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=100.00  E-value=5e-32  Score=258.02  Aligned_cols=321  Identities=16%  Similarity=0.077  Sum_probs=234.9

Q ss_pred             ChHHHHHHHccCcCC----CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcc
Q 015729           20 IPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF   95 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~   95 (401)
                      .++.+.+++.+....    ...+.......++++.+++++|.++ +++++++|+++|+..++.+++++||+|++..++|+
T Consensus        48 ~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~-~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~  126 (397)
T 2zyj_A           48 PKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRP-EEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYM  126 (397)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCG-GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCH
T ss_pred             CHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCCh-hhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcH
Confidence            467777777664321    1122222345689999999998654 45999999999999999988999999999999888


Q ss_pred             hHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEE-EEEecCCCcccccchH---HHHHHhhhcCCCcE
Q 015729           96 SLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAI-CIVHNETATGVTNNLS---KVRKLLDEYRHPAL  171 (401)
Q Consensus        96 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i-~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~  171 (401)
                      +..  ..++..|++++.++.+.++ +|++++++++++   .+++++ ++++++||||.+.|.+   +|.++|++  +|++
T Consensus       127 ~~~--~~~~~~g~~~~~~~~~~~~-~d~~~l~~~l~~---~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~--~~~~  198 (397)
T 2zyj_A          127 GAI--QAFRLQGPRFLTVPAGEEG-PDLDALEEVLKR---ERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVME--RGLV  198 (397)
T ss_dssp             HHH--HHHHTTCCEEEEEEEETTE-ECHHHHHHHHHH---CCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHH--HTCC
T ss_pred             HHH--HHHHHcCCEEEecCcCCCC-CCHHHHHHHHhh---cCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHH--cCCE
Confidence            764  4567789999999987654 899999999975   246887 5689999999999755   78999999  9999


Q ss_pred             EEEecccccCcc----eeccCcc------cceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHh
Q 015729          172 FLVDGVSSICAI----DFRMDEW------GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFY  241 (401)
Q Consensus       172 li~D~a~~~~~~----~~~~~~~------~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (401)
                      +|+|++|+.+..    +.+....      +.++++.|.||+++++.++|++++++++.+.+....            ..+
T Consensus       199 li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l~~~~------------~~~  266 (397)
T 2zyj_A          199 VVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAHPEALQKLVQAK------------QGA  266 (397)
T ss_dssp             EEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHH------------HHH
T ss_pred             EEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccceeEEEecCHHHHHHHHHHH------------Hhh
Confidence            999999986432    1222222      234889999999963345799999998877664310            001


Q ss_pred             hcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc---CCccccCCCccCCceeEEEEcCCCCC
Q 015729          242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW---GLKNCTQKEEWFSDTVTAVIVPSHIN  318 (401)
Q Consensus       242 ~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~  318 (401)
                            .++.+...+.++.++++......+++.++++.++++++.+.|++.   |+.+..+    ..+.++++.++++.+
T Consensus       267 ------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~----~~g~~~~~~~~~~~~  336 (397)
T 2zyj_A          267 ------DLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRP----KGGMFVWMELPKGLS  336 (397)
T ss_dssp             ------HSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCC----SBSSEEEEECSTTCC
T ss_pred             ------cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccC----CccEEEEEEcCCCCC
Confidence                  112344444555555543211236677888889999999999885   6766543    234578888876778


Q ss_pred             HHHHHHHHHhhCCeEEccCCCCC----CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          319 SSEIVRRAWQRYNLSLGLGLNKV----AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~~~----~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ..++.+.|.++ ||.+.+|....    .++++||++.. .+++|+++++++|+++++++
T Consensus       337 ~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~~  393 (397)
T 2zyj_A          337 AEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSYAT-LDREGIAEGVRRLGRALKGL  393 (397)
T ss_dssp             HHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEECSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEcCC-CCHHHHHHHHHHHHHHHHHH
Confidence            88999999877 99999885321    35789998776 48999999999999988753

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=100.00  E-value=2.7e-31  Score=255.35  Aligned_cols=321  Identities=12%  Similarity=0.057  Sum_probs=238.6

Q ss_pred             cCChHHHHHHHccCcCCC--CCccHHHHHHHHHHHHHHHhc-----CCCCceEEecCChhHHHHHHHhccCCCCCeEEEE
Q 015729           18 VHIPDQVIRAMNRNNEDY--RSPAVPALTKTLLEDIKKIFK-----TTSGTPFLIPTTGTGAWESALTNTLSPGDRIISF   90 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~g-----~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   90 (401)
                      .++++.+++++.+.....  ..+.......++++.++++++     .+. +++++++|+++|+..++..++++||+|+++
T Consensus        70 ~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~-~~v~~t~g~t~al~~~~~~l~~~gd~vl~~  148 (427)
T 3dyd_A           70 LPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCPEAPLEA-KDVILTSGCSQAIDLCLAVLANPGQNILVP  148 (427)
T ss_dssp             SCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBTTBCCCG-GGEEEESSHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhcCCCCCh-HHEEEecCcHHHHHHHHHHhcCCCCEEEEc
Confidence            478889998888754321  123333456789999999998     333 459999999999999999989999999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhh
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE  165 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~  165 (401)
                      .++|+++.  ..++..|++++.++.++  ++.+|++++++.+++    +++++++++++||||.+.+   +++|.++|++
T Consensus       149 ~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~----~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~  222 (427)
T 3dyd_A          149 RPGFSLYK--TLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDE----KTACLIVNNPSNPCGSVFSKRHLQKILAVAAR  222 (427)
T ss_dssp             ESCCTHHH--HHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             CCCchhHH--HHHHHcCCEEEEEecccccCCCCCHHHHHHHhcc----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Confidence            99887654  56788899999998754  456899999998864    5689999999999999999   8899999999


Q ss_pred             cCCCcEEEEecccccCcc----eeccCccc---ceEEEecCCCcccCCCc--ceEEEecH-------HHHHHhccCCCCc
Q 015729          166 YRHPALFLVDGVSSICAI----DFRMDEWG---IDVALTGSQKALSLPTG--MGIVCASP-------KALEASKTAKSVR  229 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~~----~~~~~~~~---~di~~~s~~K~l~g~~g--~G~l~~~~-------~~~~~~~~~~~~~  229 (401)
                        +|+++|+|++|+.+..    .......+   ..+++.|.+|.++ .+|  +|++++++       ++.+.+...    
T Consensus       223 --~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~-~~G~riG~~~~~~~~~~~~~~i~~~l~~~----  295 (427)
T 3dyd_A          223 --QCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWL-VPGWRLGWILIHDRRDIFGNEIRDGLVKL----  295 (427)
T ss_dssp             --TTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSS-CGGGCCEEEEEECSTTSSHHHHHHHHHHH----
T ss_pred             --CCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCC-CcCcceEEEEecCcchhhHHHHHHHHHHH----
Confidence              9999999999986431    11222222   2477889999863 444  79998874       444333211    


Q ss_pred             cccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCcee
Q 015729          230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTV  308 (401)
Q Consensus       230 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~  308 (401)
                                  ...   .++++...++++.++++.....++++.++++.++++++.+.|+++ |+.+..+.    .+.+
T Consensus       296 ------------~~~---~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~----~g~~  356 (427)
T 3dyd_A          296 ------------SQR---ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPS----GAMY  356 (427)
T ss_dssp             ------------HHH---HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCS----BTTE
T ss_pred             ------------Hhc---cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC----eeEE
Confidence                        000   124666666666666664334456788888999999999999997 87765432    3346


Q ss_pred             EEEEcC-----CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          309 TAVIVP-----SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       309 ~~~~~~-----~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +++.++     ++.+..++++.|.+++||.+.+|..+..++++||++.  .+++++++++++|+++++++
T Consensus       357 ~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~  424 (427)
T 3dyd_A          357 LMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVIT--VPEVMMLEACSRIQEFCEQH  424 (427)
T ss_dssp             EEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEEC--CCHHHHHHHHHHHHHHHHHh
Confidence            666664     2356778888887555999999865555789999865  68999999999999998765

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=100.00  E-value=4.3e-31  Score=254.73  Aligned_cols=341  Identities=11%  Similarity=-0.012  Sum_probs=239.5

Q ss_pred             CcCChHHHHHHHccCcCCC--CCccHHHHHHHHHHHHHHHhc----CC-CCceEEecCChhHHHHHHHhccC--CCCC--
Q 015729           17 PVHIPDQVIRAMNRNNEDY--RSPAVPALTKTLLEDIKKIFK----TT-SGTPFLIPTTGTGAWESALTNTL--SPGD--   85 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~g----~~-~~~~i~~~~g~t~a~~~~~~~~~--~~gd--   85 (401)
                      |.+.++.+++++.+.....  ..+.......++++.++++++    .+ .++++++++|+++|+..++.+++  ++||  
T Consensus        55 ~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~  134 (437)
T 3g0t_A           55 GLPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREY  134 (437)
T ss_dssp             CSCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSC
T ss_pred             CCCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCcc
Confidence            4456788888877643311  112212223567777777776    22 23459999999999999999888  9999  


Q ss_pred             eEEEEcCCcchHHHHHHHHHcCCcEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHH
Q 015729           86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRK  161 (401)
Q Consensus        86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~  161 (401)
                      +|+++.++|++..  ..++..|++++.++.+. ++.+|+++++++++.   ++++++++++|+||||.+.+   +++|.+
T Consensus       135 ~Vl~~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~  209 (437)
T 3g0t_A          135 GTLFIDPGFNLNK--LQCRILGQKFESFDLFEYRGEKLREKLESYLQT---GQFCSIIYSNPNNPTWQCMTDEELRIIGE  209 (437)
T ss_dssp             CEEEEESCCHHHH--HHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTT---TCCCEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             EEEEeCCCcHhHH--HHHHHcCCEEEEEeecCCCCccCHHHHHHHHhc---CCceEEEEeCCCCCCCCcCCHHHHHHHHH
Confidence            9999999887754  55677899999999864 346799999999943   46799999999999999997   666899


Q ss_pred             HhhhcCCCcEEEEecccccCcc----e--------eccCc-ccceEEEecCCCccc-CCCcceEEEecHHHHH-HhccCC
Q 015729          162 LLDEYRHPALFLVDGVSSICAI----D--------FRMDE-WGIDVALTGSQKALS-LPTGMGIVCASPKALE-ASKTAK  226 (401)
Q Consensus       162 l~~~~~~~~~li~D~a~~~~~~----~--------~~~~~-~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~-~~~~~~  226 (401)
                      +|++  +|+++|+|++|+.+..    +        ..... .+.++++.|.||+++ ++.++|++++++++.+ .+....
T Consensus       210 ~a~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~  287 (437)
T 3g0t_A          210 LATK--HDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLE  287 (437)
T ss_dssp             HHHH--TTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGH
T ss_pred             HHHH--CCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhccc
Confidence            9999  9999999999975332    1        12222 567899999999985 3345799999998877 521100


Q ss_pred             CCccccch-HHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHcCCccc------
Q 015729          227 SVRVFFDW-KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG--LENVIERHRRLGKATRLAVEAWGLKNC------  297 (401)
Q Consensus       227 ~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g--~~~~~~~~~~~~~~l~~~L~~~g~~~~------  297 (401)
                      .......+ ..+......  ...++++...+.++.++++......  +++.++++.++++++.+.|+++|+++.      
T Consensus       288 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  365 (437)
T 3g0t_A          288 ESFGRLRFGEALSSSALY--ALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGN  365 (437)
T ss_dssp             HHHSCSBHHHHHHTTHHH--HHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTTEEESSCEETT
T ss_pred             ccccccchhHHHHHHHHh--hhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEeccccCC
Confidence            00000000 000000000  0123466666666677776543211  788999999999999999998887766      


Q ss_pred             cCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCC--CcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVA--GKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~--~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .+.   ..+.++++.++ +.+..++.+.|.++ ||.+.++..+..  ++++||++. ..+++|+++++++|++++++
T Consensus       366 ~~~---~~~~~~~~~~~-~~~~~~l~~~L~~~-gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          366 EPL---ADGFYFTVGYK-GMDSSKLIEKFVRY-GMCAITLKTTGSKRNEAMRICTS-LLPESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             EEC---CSSSEEEEEET-TCCHHHHHHHHHHT-TEECEESTTTTCCCTTCEEEECS-SSCGGGHHHHHHHHHHHHHH
T ss_pred             CCC---ceeEEEEEecC-CCCHHHHHHHHHHc-CeEEeeccccCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHHhc
Confidence            120   23457788886 67889999999877 999998865422  267999876 46999999999999998764

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=100.00  E-value=2.1e-30  Score=246.14  Aligned_cols=321  Identities=11%  Similarity=0.013  Sum_probs=239.8

Q ss_pred             CcCChHHHHHHHccCcCC---CCCccHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           17 PVHIPDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      +.+.++.+++++.+....   .+.....+...++++.+++.+|.+ .++++++++|+++|++.++.+++++||+|+++.+
T Consensus        43 ~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~  122 (391)
T 4dq6_A           43 DFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEP  122 (391)
T ss_dssp             SSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCC
Confidence            345678888888774432   222345677888999999999843 2345999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHcCCcEEEEeCC--CC--CCCChHHHHHHHhccCCCCceEEEEEecCCCccccc---chHHHHHHhhh
Q 015729           93 GQFSLLWIDQQQRLNFNVDVVESD--WG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN---NLSKVRKLLDE  165 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v~~~--~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~---~l~~i~~l~~~  165 (401)
                      +|++..  ..++..|++++.++.+  .+  +.+|++++++++++     ++++++++++||||.++   ++++|.++|++
T Consensus       123 ~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-----~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~  195 (391)
T 4dq6_A          123 VYSPFN--SVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-----VKLFILCNPHNPVGRVWTKDELKKLGDICLK  195 (391)
T ss_dssp             CCTHHH--HHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-----EEEEEEESSBTTTTBCCCHHHHHHHHHHHHH
T ss_pred             CCHHHH--HHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-----CCEEEEECCCCCCCcCcCHHHHHHHHHHHHH
Confidence            888764  4567789999999987  22  24899999999874     68999999999999995   47788889999


Q ss_pred             cCCCcEEEEecccccCcc----eeccCcc-----cceEEEecCCCccc-CCCcceEEEecH-HHHHHhccCCCCccccch
Q 015729          166 YRHPALFLVDGVSSICAI----DFRMDEW-----GIDVALTGSQKALS-LPTGMGIVCASP-KALEASKTAKSVRVFFDW  234 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~~----~~~~~~~-----~~di~~~s~~K~l~-g~~g~G~l~~~~-~~~~~~~~~~~~~~~~~~  234 (401)
                        +|+++|+|++|+.+..    .......     +.++++.|.||+++ ++.++|++++++ ++.+.+....        
T Consensus       196 --~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--------  265 (391)
T 4dq6_A          196 --HNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAF--------  265 (391)
T ss_dssp             --TTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHH--------
T ss_pred             --cCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHH--------
Confidence              9999999999986432    1122222     34588999999984 334579998875 6666554210        


Q ss_pred             HHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCceeEEEE
Q 015729          235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVI  312 (401)
Q Consensus       235 ~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~  312 (401)
                             ...  ..++++...++++.++++.. ...+++.+++++++++++.+.|++ + |+.+..+.    .+.++++.
T Consensus       266 -------~~~--~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----~~~~~~~~  331 (391)
T 4dq6_A          266 -------TRI--DIKRNNCFSLVATEASYNNG-ESWLESFLEYLESNIDFAIKYINENMPKLKVRKPE----GTYLLWVD  331 (391)
T ss_dssp             -------HHT--TCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCS----BSSEEEEE
T ss_pred             -------Hhh--cCCCCCHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCC----ccEEEEEE
Confidence                   001  12346666666666666642 223677888999999999999988 4 77776542    34566788


Q ss_pred             cCC-CCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          313 VPS-HINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       313 ~~~-~~~~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      ++. +.+..++.+.|.+++||.+.+|...  ..++++||++.  .+++++++++++|++++
T Consensus       332 ~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l  390 (391)
T 4dq6_A          332 FSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA--CPRSMLEEALIRIKNAI  390 (391)
T ss_dssp             CGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence            865 5688899999987779999988432  23578999877  58999999999999876

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=1.9e-31  Score=252.19  Aligned_cols=316  Identities=14%  Similarity=0.075  Sum_probs=234.0

Q ss_pred             ChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHh----cCC-CCc-eEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           20 IPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIF----KTT-SGT-PFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~----g~~-~~~-~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      .++.+.+++.+....  ...+.......++++.+++++    |.+ .++ ++++++|+++|+..++.+++++||+|+++.
T Consensus        39 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~  118 (376)
T 2dou_A           39 PPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPE  118 (376)
T ss_dssp             CCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEES
T ss_pred             CCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhcCCCCEEEECC
Confidence            567888888775422  122333356778888888887    875 223 599999999999999999899999999999


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCC
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRH  168 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~  168 (401)
                      ++|++..  ..++..|++++.++.+.+..+|+++++++++.    +++++++++++||||.++|   +++|.++|++  +
T Consensus       119 p~y~~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~--~  190 (376)
T 2dou_A          119 VAYPSYF--GAARVASLRTFLIPLREDGLADLKAVPEGVWR----EAKVLLLNYPNNPTGAVADWGYFEEALGLARK--H  190 (376)
T ss_dssp             SCCHHHH--HHHHHTTCEEEEECBCTTSSBCGGGSCHHHHH----HEEEEEECSSCTTTCCCCCHHHHHHHHHHHHH--T
T ss_pred             CCcHhHH--HHHHHcCCEEEEeeCCCCCCCCHHHHHHhhcc----CceEEEECCCCCCcCccCCHHHHHHHHHHHHH--c
Confidence            9887764  45677899999999844446799999998863    5699999999999999987   5678899999  9


Q ss_pred             CcEEEEecccccCcc---e---ecc-CcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHH
Q 015729          169 PALFLVDGVSSICAI---D---FRM-DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF  240 (401)
Q Consensus       169 ~~~li~D~a~~~~~~---~---~~~-~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
                      |+++|+|++|+.+..   +   .+. ...+.++++.|.+|+++ ++.++|+++.++++.+.+...             ..
T Consensus       191 ~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~-------------~~  257 (376)
T 2dou_A          191 GLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLERV-------------KG  257 (376)
T ss_dssp             TCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEECHHHHHHHHHH-------------HH
T ss_pred             CCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecCHHHHHHHHHH-------------HH
Confidence            999999999986432   1   122 22356899999999984 233479999999987766531             00


Q ss_pred             hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHH
Q 015729          241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSS  320 (401)
Q Consensus       241 ~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (401)
                      .     +..+.+...++++.++++.. ...+++.++++.++++++.+.|++. +.+..+    ..+.++++.+|++.+..
T Consensus       258 ~-----~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~----~~~~~~~~~~~~~~~~~  326 (376)
T 2dou_A          258 V-----IDFNQYAGVLRMGVEALKTP-KEVVRGYARVYRERALGMAEALKGV-LSLLPP----RATMYLWGRLPEGVDDL  326 (376)
T ss_dssp             H-----HCCCSCHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHHHTTT-SEECCC----CBSSEEEEECCTTCCHH
T ss_pred             h-----cccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHh-cCccCC----CeeEEEEEECCCCCCHH
Confidence            0     11234555555555555532 2346778888889999999999886 554432    24457888887667788


Q ss_pred             HHHHHHHhhCCeEEccCCCCC--CCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          321 EIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       321 ~l~~~L~~~~~i~v~~g~~~~--~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      ++.+.|.++ ||.+.+|..+.  .++++||++..  +++++++++++|++++
T Consensus       327 ~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~--~~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          327 EFGLRLVER-GVALAPGRGFGPGGKGFVRIALVR--PLEELLEAAKRIREAL  375 (376)
T ss_dssp             HHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence            999999887 99999885432  25789998765  8999999999998764

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=100.00  E-value=4.4e-31  Score=252.49  Aligned_cols=331  Identities=11%  Similarity=0.088  Sum_probs=243.1

Q ss_pred             CCCCCCCcccccCCCcCChHHHHHHHccCcCCCCC----ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            3 YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRS----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         3 ~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      |.++.++.|+..+++..+.+++.+++.++......    +...+...++++.+++++|.+.   .+++++|++|+..++.
T Consensus        61 ~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~---~i~~~sGt~a~~~~l~  137 (409)
T 3kki_A           61 DIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDE---CLLSQSGWNANVGLLQ  137 (409)
T ss_dssp             SEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSE---EEEESCHHHHHHHHHH
T ss_pred             eEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCe---EEEecchHHHHHHHHH
Confidence            45566666665555544444555555443221111    1222456689999999998865   4556777899999999


Q ss_pred             ccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHH
Q 015729           79 NTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSK  158 (401)
Q Consensus        79 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~  158 (401)
                      +++++||.|++..+.|++..  ..++..|++++.++.     .|++++++++++.   +++++++++++||||.+.|+++
T Consensus       138 ~~~~~gd~Vl~~~~~~~~~~--~~~~~~g~~~~~~~~-----~d~~~le~~l~~~---~~~~vi~~~~~nptG~~~~l~~  207 (409)
T 3kki_A          138 TICQPNTNVYIDFFAHMSLW--EGARYANAQAHPFMH-----NNCDHLRMLIQRH---GPGIIVVDSIYSTLGTIAPLAE  207 (409)
T ss_dssp             HHCCTTCEEEEETTSCHHHH--HHHHHTTCEEEEECT-----TCHHHHHHHHHHH---CSCEEEEESBCTTTCCBCCHHH
T ss_pred             HhcCCCCEEEECCCcCHHHH--HHHHHcCCeEEEecC-----CCHHHHHHHHHhc---CCeEEEECCCCCCCCCcCCHHH
Confidence            99999999999999877664  345667888887764     4899999999862   3589999999999999999999


Q ss_pred             HHHHhhhcCCCcEEEEecccccCcce---------eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCc
Q 015729          159 VRKLLDEYRHPALFLVDGVSSICAID---------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR  229 (401)
Q Consensus       159 i~~l~~~~~~~~~li~D~a~~~~~~~---------~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~  229 (401)
                      |.++|++  +|++||+|++|+.+...         .+. ..++|+++.|.+|+++++ | |++++++++.+.+....   
T Consensus       208 l~~la~~--~~~~li~De~~~~g~~g~~g~~~~~~~~~-~~~~di~~~s~sK~~~~~-g-g~v~~~~~~~~~~~~~~---  279 (409)
T 3kki_A          208 LVNISKE--FGCALLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYR-A-GAIWCNNEVNRCVPFIS---  279 (409)
T ss_dssp             HHHHHHH--HTCEEEEECTTTTTTSSGGGCCHHHHHTC-GGGCSEEEEESSSTTCSS-C-EEEEESSSGGGTHHHHC---
T ss_pred             HHHHHHH--cCCEEEEECCccccccCCCCCcchhhcCC-CCCCCEEEeecchhhCCC-c-eEEEECHHHHHHHHHhC---
Confidence            9999999  99999999999865431         111 135789999999999644 4 99999988765443211   


Q ss_pred             cccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeE
Q 015729          230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVT  309 (401)
Q Consensus       230 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~  309 (401)
                               ..+.    +..+.+...++++.++++.+...  ++.++++.++++++.+.|+++|+++..      .+.++
T Consensus       280 ---------~~~~----~~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~------~~~~~  338 (409)
T 3kki_A          280 ---------YPAI----FSSTLLPYEAAGLETTLEIIESA--DNRRQHLDRMARKLRIGLSQLGLTIRS------ESQII  338 (409)
T ss_dssp             ---------HHHH----HSBCCCHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHTTTCCCCC------SSSEE
T ss_pred             ---------cCcc----ccCCCcHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCccCC------CCCEE
Confidence                     0011    11235667777888888877654  678888999999999999998877652      23467


Q ss_pred             EEEcCCCCCHHHHHHHHHhhCCeEEccCCCC---CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCCC
Q 015729          310 AVIVPSHINSSEIVRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYP  376 (401)
Q Consensus       310 ~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~---~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~~  376 (401)
                      ++.+++..+..++.+.|.++ ||.+.+...+   ...+++||++...++++|+++++++|+++++..++.
T Consensus       339 ~~~~~~~~~~~~~~~~L~~~-Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~~~~  407 (409)
T 3kki_A          339 GLETGDERNTEKVRDYLESN-GVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYGDFY  407 (409)
T ss_dssp             EEEEESHHHHHHHHHHHHHT-TEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             EEEeCCHHHHHHHHHHHHHC-CceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhcCCCC
Confidence            77775443466789999877 9998776432   234689999888889999999999999999876654

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=100.00  E-value=5.6e-31  Score=249.78  Aligned_cols=316  Identities=13%  Similarity=0.050  Sum_probs=230.1

Q ss_pred             CChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHH----hcCC-CCc-eEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKI----FKTT-SGT-PFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~----~g~~-~~~-~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      +.++.+.+++.+.... ...+.......++++.++++    +|.+ .++ ++++++|+++|+..++.+++++||+|+++.
T Consensus        43 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~  122 (386)
T 1u08_A           43 DGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFD  122 (386)
T ss_dssp             CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeC
Confidence            3567788777764321 11111112234555555555    5753 334 599999999999999998899999999999


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcC
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR  167 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~  167 (401)
                      ++|++..  ..++..|++++.++.+. ++.+|++++++.++    ++++++++++++||||.+.|   +++|.++|++  
T Consensus       123 p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~--  194 (386)
T 1u08_A          123 PSYDSYA--PAIALSGGIVKRMALQPPHFRVDWQEFAALLS----ERTRLVILNTPHNPSATVWQQADFAALWQAIAG--  194 (386)
T ss_dssp             SCCTTHH--HHHHHTTCEEEEEECCTTTCCCCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTT--
T ss_pred             CCchhHH--HHHHHcCCEEEEeecCcccCcCCHHHHHHhhc----ccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHH--
Confidence            9988764  45677899999999876 46789999999986    36799999999999999986   5788999999  


Q ss_pred             CCcEEEEecccccCcc------ee-ccC-cccceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHH
Q 015729          168 HPALFLVDGVSSICAI------DF-RMD-EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDY  237 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~------~~-~~~-~~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  237 (401)
                      +|+++|+|++|+.+..      ++ ... ..+.|+++.|.||+++ ++|  +|++++++++.+.+...            
T Consensus       195 ~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~------------  261 (386)
T 1u08_A          195 HEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYH-MTGWKVGYCVAPAPISAEIRKV------------  261 (386)
T ss_dssp             SCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTT-CGGGCCEEEECCHHHHHHHHHH------------
T ss_pred             cCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcC-CcccceEEEEcCHHHHHHHHHH------------
Confidence            9999999999986321      11 111 2468999999999984 455  79999999887766431            


Q ss_pred             HHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCC-
Q 015729          238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH-  316 (401)
Q Consensus       238 ~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~-  316 (401)
                       ....     .++.+...+.++.++++.. ..++++.++++.++++++.+.|++.|+++..+    ..+.++++.+++. 
T Consensus       262 -~~~~-----~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~g~~~~~~~~~~~  330 (386)
T 1u08_A          262 -HQYL-----TFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNESRLEILPC----EGTYFLLVDYSAVS  330 (386)
T ss_dssp             -HHHH-----TSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSSSCEECCC----CBSSEEEEECTTTC
T ss_pred             -HHhh-----ccCCChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCC----CceEEEEEecCCCC
Confidence             0000     2234555555566666543 23467788889999999999998878776543    2345788888653 


Q ss_pred             -CCHHHHHHHHHhhCCeEEccCCCC----CCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          317 -INSSEIVRRAWQRYNLSLGLGLNK----VAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       317 -~~~~~l~~~L~~~~~i~v~~g~~~----~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                       .+..++.+.|.+++||.+.+|...    ..++++||++..  +++++++++++|++
T Consensus       331 ~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~  385 (386)
T 1u08_A          331 TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK--KESTLLAAAERLRQ  385 (386)
T ss_dssp             CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS--CHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcC--CHHHHHHHHHHHhh
Confidence             577889998876669999987432    135689998864  89999999998853

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=100.00  E-value=6.5e-31  Score=248.41  Aligned_cols=318  Identities=10%  Similarity=0.014  Sum_probs=234.2

Q ss_pred             CcCChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHhc------CCCCceEEecCChhHHHHHHHhccCCCCCeEEE
Q 015729           17 PVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFK------TTSGTPFLIPTTGTGAWESALTNTLSPGDRIIS   89 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~g------~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~   89 (401)
                      +.+.++.+++++.+.... ...+.. .. .++++.++++++      .++ +++++++|+++|++.++.+++++||+|++
T Consensus        34 ~~~~~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~-~~i~~t~g~~~a~~~~~~~~~~~gd~vl~  110 (377)
T 3fdb_A           34 DFSTCPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARP-EWIFPIPDVVRGLYIAIDHFTPAQSKVIV  110 (377)
T ss_dssp             CSCCCHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCG-GGEEEESCHHHHHHHHHHHHSCTTCCEEE
T ss_pred             CCCCCHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCH-HHEEEeCChHHHHHHHHHHhcCCCCEEEE
Confidence            456778888888764432 111221 22 567777777776      444 45999999999999999999999999999


Q ss_pred             EcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhc
Q 015729           90 FLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY  166 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~  166 (401)
                      ..++|++..  ..++..|++++.++.+.+  +|++++++++++    +++++++++++||||.+.|   +++|.++|++ 
T Consensus       111 ~~~~~~~~~--~~~~~~g~~~~~~~~~~~--~d~~~l~~~l~~----~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-  181 (377)
T 3fdb_A          111 PTPAYPPFF--HLLSATQREGIFIDATGG--INLHDVEKGFQA----GARSILLCNPYNPLGMVFAPEWLNELCDLAHR-  181 (377)
T ss_dssp             EESCCTHHH--HHHHHHTCCEEEEECTTS--CCHHHHHHHHHT----TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHH-
T ss_pred             cCCCcHhHH--HHHHHcCCEEEEccCCCC--CCHHHHHHHhcc----CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHH-
Confidence            999988764  557778999999999877  899999999985    4689999999999999986   5567777999 


Q ss_pred             CCCcEEEEecccccCcce-----eccC---cccceEEEecCCCccc-CCCcceEEEe-cHHHHHHhccCCCCccccchHH
Q 015729          167 RHPALFLVDGVSSICAID-----FRMD---EWGIDVALTGSQKALS-LPTGMGIVCA-SPKALEASKTAKSVRVFFDWKD  236 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~~-----~~~~---~~~~di~~~s~~K~l~-g~~g~G~l~~-~~~~~~~~~~~~~~~~~~~~~~  236 (401)
                       +|+++|+|++|+.+...     .++.   ..+.++++.|.+|+++ ++.++|++++ ++++.+.+.....         
T Consensus       182 -~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~---------  251 (377)
T 3fdb_A          182 -YDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSP---------  251 (377)
T ss_dssp             -TTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCH---------
T ss_pred             -cCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHH---------
Confidence             99999999999863221     1221   2346689999999983 2344787776 6777776654210         


Q ss_pred             HHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcC
Q 015729          237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVP  314 (401)
Q Consensus       237 ~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~  314 (401)
                               ...++++...++++.++++.. ...+++.++++.++++++.+.|++.  |+++..+.    .+.++++.++
T Consensus       252 ---------~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----~~~~~~~~~~  317 (377)
T 3fdb_A          252 ---------VIKDGASTLGLIAAEAAYRYG-TDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQ----ATYLMWIDFR  317 (377)
T ss_dssp             ---------HHHCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCS----BCSEEEEECT
T ss_pred             ---------hhcCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCC----eeEEEEEECc
Confidence                     012246666666666666542 2336788899999999999999984  88776542    3456678886


Q ss_pred             CC-CCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          315 SH-INSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       315 ~~-~~~~~l~~~L~~~~~i~v~~g~~~~--~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .. .+ .++...|.+++||.+.+|..+.  .++++||++..  +++++++++++|+++++++
T Consensus       318 ~~~~~-~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~--~~e~i~~~l~~l~~~l~~~  376 (377)
T 3fdb_A          318 DTTIE-GSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT--SREVLEEAIDRMAKAVSHH  376 (377)
T ss_dssp             TSCCC-SCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHTTC
T ss_pred             ccCCC-HHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhc
Confidence            52 33 5677777766699999885432  35789998774  8999999999999998653

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.1e-31  Score=254.83  Aligned_cols=320  Identities=13%  Similarity=0.090  Sum_probs=231.3

Q ss_pred             CChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHh----cCC-CCc-eEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           19 HIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGT-PFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----g~~-~~~-~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      +.++.+.+++.+.... ...+.......++++.+++++    |.+ .++ ++++++|+++|+..++.+++++||+|+++.
T Consensus        38 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~  117 (411)
T 2o0r_A           38 DGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIE  117 (411)
T ss_dssp             CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeC
Confidence            4567777777764322 111221122345566665554    653 233 599999999999999988899999999999


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCCCC---CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhh
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESDWG---EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE  165 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~---~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~  165 (401)
                      ++|++..  ..++..|++++.++.+.+   +.+|+++++++++    ++++++++++++||||.+.|   +++|.++|++
T Consensus       118 ~~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~----~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~  191 (411)
T 2o0r_A          118 PFYDSYS--PVVAMAGAHRVTVPLVPDGRGFALDADALRRAVT----PRTRALIINSPHNPTGAVLSATELAAIAEIAVA  191 (411)
T ss_dssp             SCCTTHH--HHHHHTTCEEEEEECEEETTEEECCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             CCcHhHH--HHHHHcCCEEEEeeccccccCCCCCHHHHHHhhc----cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            9988764  456778999999998653   4589999999986    36799999999999999987   4889999999


Q ss_pred             cCCCcEEEEecccccCcce----ec---cC-cccceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchH
Q 015729          166 YRHPALFLVDGVSSICAID----FR---MD-EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWK  235 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~~~----~~---~~-~~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~  235 (401)
                        +|+++|+|++|+.+...    ..   .. ..+.|+++.|.+|+++ ++|  +|++++++++.+.+...          
T Consensus       192 --~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~----------  258 (411)
T 2o0r_A          192 --ANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFN-CTGWKIGWACGPAELIAGVRAA----------  258 (411)
T ss_dssp             --TTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTT-CTTTCEEEEECCHHHHHHHHHH----------
T ss_pred             --cCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcC-CccceEEEEeeCHHHHHHHHHH----------
Confidence              99999999999865321    11   11 1468999999999884 555  79999999887766431          


Q ss_pred             HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC
Q 015729          236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS  315 (401)
Q Consensus       236 ~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  315 (401)
                         ....     .++.+...++++.++++.. ..++++.++++.++++++.+.|++.|+++..+    ..+.++++.+++
T Consensus       259 ---~~~~-----~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~g~~~~~~~~~  325 (411)
T 2o0r_A          259 ---KQYL-----SYVGGAPFQPAVALALDTE-DAWVAALRNSLRARRDRLAAGLTEIGFAVHDS----YGTYFLCADPRP  325 (411)
T ss_dssp             ---HHHH-----TSCCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHTCEECCC----CBSSEEEEECGG
T ss_pred             ---Hhhc-----cCCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHcCCEecCC----CeeEEEEEecCC
Confidence               0111     1123333345556666543 33467788899999999999999888776543    234578888864


Q ss_pred             --CCCHHHHHHHHHhhCCeEEccCCCC--C-----------CCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          316 --HINSSEIVRRAWQRYNLSLGLGLNK--V-----------AGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       316 --~~~~~~l~~~L~~~~~i~v~~g~~~--~-----------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                        +.+..++.+.|.++.||.+.+|...  .           .++++||++..  +++|+++++++|++++++
T Consensus       326 ~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~~~~l~~~~~~  395 (411)
T 2o0r_A          326 LGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK--RDDTLDEAIRRLSVLAER  395 (411)
T ss_dssp             GTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCS--CHHHHHHHHHHHGGGGC-
T ss_pred             CCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecC--CHHHHHHHHHHHHHHHhc
Confidence              2567889888875559999887432  1           24679998754  899999999999987654

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=100.00  E-value=3.1e-31  Score=255.17  Aligned_cols=320  Identities=12%  Similarity=0.045  Sum_probs=233.4

Q ss_pred             CChHHHHHHHccCcCC----CCCccHHHHHHHHHHHHHHHh----cCC-CCc-eEEecCChhHHHHHHHhccCCCCCeEE
Q 015729           19 HIPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIF----KTT-SGT-PFLIPTTGTGAWESALTNTLSPGDRII   88 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~----g~~-~~~-~i~~~~g~t~a~~~~~~~~~~~gd~vl   88 (401)
                      +.++.+++++.+....    ...+.......++++.+++++    |.+ .++ ++++++|+++|+..++.+++++||+|+
T Consensus        50 ~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl  129 (429)
T 1yiz_A           50 HAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVI  129 (429)
T ss_dssp             CCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEE
T ss_pred             CCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEE
Confidence            4567788777764322    111111122345556665554    753 334 599999999999999998899999999


Q ss_pred             EEcCCcchHHHHHHHHHcCCcEEEEeCCCC----------CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---
Q 015729           89 SFLIGQFSLLWIDQQQRLNFNVDVVESDWG----------EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---  155 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~----------~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---  155 (401)
                      ++.++|++..  ..++..|++++.++.+.+          +.+|++++++.++    ++++++++++++||||.+.+   
T Consensus       130 ~~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~v~~~~p~nptG~~~~~~~  203 (429)
T 1yiz_A          130 IIEPFFDCYE--PMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN----EKTKMIIINTPHNPLGKVMDRAE  203 (429)
T ss_dssp             EEESCCTTHH--HHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHH
T ss_pred             EcCCCchhHH--HHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhc----cCceEEEECCCCCCCCccCCHHH
Confidence            9999888765  456778999999998763          4689999999986    36799999999999999985   


Q ss_pred             hHHHHHHhhhcCCCcEEEEecccccCcc------ee-ccC-cccceEEEecCCCcccCCCc--ceEEEecHHHHHHhccC
Q 015729          156 LSKVRKLLDEYRHPALFLVDGVSSICAI------DF-RMD-EWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTA  225 (401)
Q Consensus       156 l~~i~~l~~~~~~~~~li~D~a~~~~~~------~~-~~~-~~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~  225 (401)
                      +++|.++|++  +|+++|+|++|+.+..      ++ ... ..+.|+++.|.+|+++ ++|  +|++++++++.+.+...
T Consensus       204 l~~i~~~~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~  280 (429)
T 1yiz_A          204 LEVVANLCKK--WNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFS-LTGWKIGWAYGPEALLKNLQMV  280 (429)
T ss_dssp             HHHHHHHHHH--HTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHT-CGGGCCEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHH--cCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccC-CCCcceEEEEeCHHHHHHHHHH
Confidence            8889999999  9999999999985321      12 121 3578999999999884 455  79999999887766431


Q ss_pred             CCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHH-----HH-HhcHHHHHHHHHHHHHHHHHHHHHcCCccccC
Q 015729          226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL-----IF-EEGLENVIERHRRLGKATRLAVEAWGLKNCTQ  299 (401)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~-----~~-~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  299 (401)
                                   ..     ...++.+...++++.++++.     .. ...+++.+++++++++++.+.|++.|+.+..+
T Consensus       281 -------------~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  342 (429)
T 1yiz_A          281 -------------HQ-----NCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVP  342 (429)
T ss_dssp             -------------HH-----TTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTCEEEEC
T ss_pred             -------------Hh-----hcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence                         00     11234556556666666665     21 22367888889999999999999888776543


Q ss_pred             CCccCCceeEEEEcCCC------------CCHHHHHHHHHhhCCeEEccCCCCC-------CCcEEEEeecccCCHHHHH
Q 015729          300 KEEWFSDTVTAVIVPSH------------INSSEIVRRAWQRYNLSLGLGLNKV-------AGKVFRIGHLGHLNELQLL  360 (401)
Q Consensus       300 ~~~~~~~~~~~~~~~~~------------~~~~~l~~~L~~~~~i~v~~g~~~~-------~~~~~Ri~~~~~~~~~di~  360 (401)
                          ..+.++++.+++.            .+..++.+.|.+++||.+.+|....       .++++||++..  ++++++
T Consensus       343 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~i~  416 (429)
T 1yiz_A          343 ----QGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK--KDENLQ  416 (429)
T ss_dssp             ----SBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCS--CHHHHH
T ss_pred             ----CcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecC--CHHHHH
Confidence                2345788888643            3456788888755599999874322       15789998864  899999


Q ss_pred             HHHHHHHHHHH
Q 015729          361 GCLAGVEMILK  371 (401)
Q Consensus       361 ~~~~~i~~~l~  371 (401)
                      +++++|+++++
T Consensus       417 ~~l~~l~~~l~  427 (429)
T 1yiz_A          417 KAAEILRKWKG  427 (429)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHhcc
Confidence            99999998764

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=100.00  E-value=7.8e-31  Score=248.58  Aligned_cols=314  Identities=14%  Similarity=0.122  Sum_probs=233.9

Q ss_pred             CChHHHHHHHccCcCC-------C-CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEE
Q 015729           19 HIPDQVIRAMNRNNED-------Y-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISF   90 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~-------~-~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   90 (401)
                      +.++.+.+++.+....       . ..........++++.+++++|.+  + .+++++|++|+..++.+++++||.|++.
T Consensus        53 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~--~-~i~~~sGt~a~~~~~~~~~~~gd~v~~~  129 (384)
T 1bs0_A           53 SHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYS--R-ALLFISGFAANQAVIAAMMAKEDRIAAD  129 (384)
T ss_dssp             GGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCS--E-EEEESCHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCC--c-EEEeCCcHHHHHHHHHHhCCCCcEEEEc
Confidence            4567777777663211       1 11123467889999999999985  3 5666667999999998889999999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCc
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPA  170 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~  170 (401)
                      .+.|.+..  ..++..|++++.++.     .|++++++.+++.. .+++++++++++||||.+.|+++|.++|++  +|+
T Consensus       130 ~~~~~~~~--~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~l~~~--~~~  199 (384)
T 1bs0_A          130 RLSHASLL--EAASLSPSQLRRFAH-----NDVTHLARLLASPC-PGQQMVVTEGVFSMDGDSAPLAEIQQVTQQ--HNG  199 (384)
T ss_dssp             TTCCHHHH--HHHHTSSSEEEEECT-----TCHHHHHHHHHSCC-SSCEEEEEESBCTTTCCBCCHHHHHHHHHH--TTC
T ss_pred             ccccHHHH--HHHHHcCCCEEEeCC-----CCHHHHHHHHHhcC-CCCeEEEEeCCCCCCCCccCHHHHHHHHHH--cCc
Confidence            88766543  456678999988874     38999999998643 236888999999999999999999999999  999


Q ss_pred             EEEEecccccCcce------eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcC
Q 015729          171 LFLVDGVSSICAID------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG  244 (401)
Q Consensus       171 ~li~D~a~~~~~~~------~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  244 (401)
                      ++|+|++|+.+...      .+....++|++++|.||+++ ++| |++++++++.+.+....            ..+.. 
T Consensus       200 ~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G-G~~~~~~~~~~~l~~~~------------~~~~~-  264 (384)
T 1bs0_A          200 WLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFG-VSG-AAVLCSSTVADYLLQFA------------RHLIY-  264 (384)
T ss_dssp             EEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTS-SCC-EEEEECHHHHHHHHHHC------------HHHHS-
T ss_pred             EEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhh-ccC-cEEEeCHHHHHHHHHhc------------hhhhc-
Confidence            99999999865421      11112357999999999985 777 99999998877664311            00111 


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHH
Q 015729          245 TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVR  324 (401)
Q Consensus       245 ~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  324 (401)
                         ..+++...++++.++++.+.+.+.++..++++++++++.+.|+++|+++...     .+.++++.++++.+..++.+
T Consensus       265 ---~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-----~~~~~~~~~~~~~~~~~l~~  336 (384)
T 1bs0_A          265 ---STSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADS-----CSAIQPLIVGDNSRALQLAE  336 (384)
T ss_dssp             ---SBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECSC-----CSSBCCEEEESHHHHHHHHH
T ss_pred             ---CCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCcccCC-----CCCEEEEEeCCHHHHHHHHH
Confidence               1246777777778888876532346788899999999999999888766531     22355567654445778999


Q ss_pred             HHHhhCCeEEccCCCCC---CCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          325 RAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       325 ~L~~~~~i~v~~g~~~~---~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      .|.++ ||.+.++..+.   ..+++||++...++++|+++++++|+++
T Consensus       337 ~l~~~-gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          337 KLRQQ-GCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             HHHHT-TEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHC-CcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence            99877 99999885432   2468999988888999999999999764

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.98  E-value=1.2e-30  Score=252.03  Aligned_cols=323  Identities=16%  Similarity=0.126  Sum_probs=234.3

Q ss_pred             ChHHHHHHHccCcCCC----CCccHHHHHHHHHHHHHHHh----cCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           20 IPDQVIRAMNRNNEDY----RSPAVPALTKTLLEDIKKIF----KTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~~----~~~~~~~~~~~l~~~la~~~----g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      .++.+.+++.+.....    ..+.......++++.+++++    |.+.++++++++|+++|+..++.+++++||+|++..
T Consensus        92 p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~  171 (448)
T 3aow_A           92 PKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEA  171 (448)
T ss_dssp             CHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeC
Confidence            5666777666533210    11222233457777777777    873334699999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHh----ccCCCCceEE-EEEecCCCcccccc---hHHHHHHh
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA----ADTAHTIKAI-CIVHNETATGVTNN---LSKVRKLL  163 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~----~~~~~~~~~i-~~~~~~n~tG~~~~---l~~i~~l~  163 (401)
                      ++|++..  ..++..|++++.++.+.++ +|+++|+++++    +.  .+++++ ++++++||||.+++   +++|.++|
T Consensus       172 p~y~~~~--~~~~~~g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~--~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la  246 (448)
T 3aow_A          172 PTYLAAL--QAFNFYEPQYIQIPLDDEG-MKVEILEEKLKELKSQG--KKVKVVYTVPTFQNPAGVTMNEDRRKYLLELA  246 (448)
T ss_dssp             SCCHHHH--HHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHHHHTT--CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHH
T ss_pred             CChHHHH--HHHHHcCCEEEEeccCCCC-CCHHHHHHHHhhhhccC--CCCeEEEECCCCCCCcCCCCCHHHHHHHHHHH
Confidence            9887754  4567789999999987654 89999999987    31  257887 46788999999987   46799999


Q ss_pred             hhcCCCcEEEEecccccCcce-------eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHH
Q 015729          164 DEYRHPALFLVDGVSSICAID-------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKD  236 (401)
Q Consensus       164 ~~~~~~~~li~D~a~~~~~~~-------~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~  236 (401)
                      ++  +|++||+|++|+.+...       ...+..+.++++.|.+|+++.+.++|++++++++.+.+....          
T Consensus       247 ~~--~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~~GlriG~v~~~~~l~~~l~~~~----------  314 (448)
T 3aow_A          247 SE--YDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAPGFRIGWMVGDPGIIRKMEIAK----------  314 (448)
T ss_dssp             HH--HTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTCGGGCCEEEEECHHHHHHHHHHH----------
T ss_pred             HH--cCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhccccccEEEEEeCHHHHHHHHHHH----------
Confidence            99  99999999999865321       122233568899999999953334799999999877665320          


Q ss_pred             HHHHhhcCCCCCCCCcHHHHHHHHHHHHHH-HHhcHHHHHHHHHHHHHHHHHHHHHc---CCccccCCCccCCceeEEEE
Q 015729          237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLI-FEEGLENVIERHRRLGKATRLAVEAW---GLKNCTQKEEWFSDTVTAVI  312 (401)
Q Consensus       237 ~~~~~~~g~~~~~~~~~~~~~a~~~al~~~-~~~g~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~~  312 (401)
                        ...      ..+++...+.++.++++.. ....+++.++++.++++.+.+.|++.   |+.+..+    ..+.++++.
T Consensus       315 --~~~------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p----~~g~~~~v~  382 (448)
T 3aow_A          315 --QST------DLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKP----EGGMFIWVT  382 (448)
T ss_dssp             --HHH------HSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCC----SBSSEEEEE
T ss_pred             --HHh------cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCC----CccEEEEEE
Confidence              000      1124555455555555431 12236677888889999999999874   6766543    234678899


Q ss_pred             cCCCCCHHHHHHHHHhhCCeEEccCCCC----CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          313 VPSHINSSEIVRRAWQRYNLSLGLGLNK----VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       313 ~~~~~~~~~l~~~L~~~~~i~v~~g~~~----~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +|++.+..++.+.|.++ ||.+.+|...    ...+++|+++.. .+++++++++++|++++++.
T Consensus       383 ~~~~~~~~~l~~~l~~~-gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~~~  445 (448)
T 3aow_A          383 LPDGIDSKKMLERAIKK-GVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAETIKEE  445 (448)
T ss_dssp             CSTTCCHHHHHHHHHHT-TEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHC-CcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence            98777888999999887 9999988432    135789998665 58999999999999988653

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.98  E-value=4.1e-30  Score=242.40  Aligned_cols=311  Identities=12%  Similarity=0.076  Sum_probs=232.1

Q ss_pred             CcCChHHHHHHHccCcCC----CCCccHHHHHHHHHHHHHHH----hcCC-CCceEEecCChhHHHHHHHhccCCCCCeE
Q 015729           17 PVHIPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKI----FKTT-SGTPFLIPTTGTGAWESALTNTLSPGDRI   87 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~----~g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~v   87 (401)
                      |.+.++.+.+++.+....    ...+.... ..++++.++++    +|.. .++.+++++|+++|+..++.+++++||+|
T Consensus        41 ~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~-~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~~gd~V  119 (369)
T 3cq5_A           41 PYPPSEALVADLVATVDKIATELNRYPERD-AVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTA  119 (369)
T ss_dssp             CSCCCHHHHHHHHHHHHHHGGGTTSCCCTT-CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCSTTCEE
T ss_pred             CCCCCHHHHHHHHHHHHhcccccccCCCcc-HHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcCCCCEE
Confidence            445677888877664311    11111111 24677777777    3332 23459999999999999998889999999


Q ss_pred             EEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcC
Q 015729           88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR  167 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~  167 (401)
                      +++.++|++..  ..++..|++++.++.+.++.+|++++++++++   .+++++++++++||||.+.|++++.++|+.  
T Consensus       120 l~~~~~y~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~~~~l~~l~~~--  192 (369)
T 3cq5_A          120 LGFQPSYSMHP--ILAKGTHTEFIAVSRGADFRIDMDVALEEIRA---KQPDIVFVTTPNNPTGDVTSLDDVERIINV--  192 (369)
T ss_dssp             EEEESSCTHHH--HHHHHTTCEEEEEECCTTSSCCHHHHHHHHHH---HCCSEEEEESSCTTTCCCCCHHHHHHHHHH--
T ss_pred             EEcCCChHHHH--HHHHHcCCEEEEecCCcCCCCCHHHHHHHhhc---cCCCEEEEeCCCCCCCCCCCHHHHHHHHHh--
Confidence            99999988764  45677899999999887778899999999975   146899999999999999999999999999  


Q ss_pred             CCcEEEEecccccCcce---ecc-Cccc-ceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHh
Q 015729          168 HPALFLVDGVSSICAID---FRM-DEWG-IDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFY  241 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~~---~~~-~~~~-~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (401)
                      +++++|+|++|+.+...   ... +..+ .++++.|.||+++ ++.++|++++++++.+.+.....              
T Consensus       193 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~--------------  258 (369)
T 3cq5_A          193 APGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVRL--------------  258 (369)
T ss_dssp             CSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHHHTTSC--------------
T ss_pred             CCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHHHHHHcCC--------------
Confidence            88999999999866532   222 2345 6799999999985 22346999999988777654311              


Q ss_pred             hcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHH
Q 015729          242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSE  321 (401)
Q Consensus       242 ~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (401)
                            .++++...++++.++++.  ...+++.++++.++++++.+.|++.|+++...     .+.++++.++  .+..+
T Consensus       259 ------~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-----~~~~~~~~~~--~~~~~  323 (369)
T 3cq5_A          259 ------PYHLSALSQAAAIVALRH--SADTLGTVEKLSVERVRVAARLEELGYAVVPS-----ESNFVFFGDF--SDQHA  323 (369)
T ss_dssp             ------TTCSCHHHHHHHHHHHHT--HHHHHTHHHHHHHHHHHHHHHHHHHTCEEECC-----SSSEEEEECC--SSHHH
T ss_pred             ------CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCEECCC-----CCeEEEEECC--CCHHH
Confidence                  123566656666666653  22367788889999999999998888776532     2246777875  46788


Q ss_pred             HHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          322 IVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       322 l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      +.+.|.++ ||.+.++.   .++++||++.   +++|+++++++|+++++
T Consensus       324 l~~~l~~~-gi~v~~~~---~~~~iRis~~---~~~~i~~~~~~l~~~~~  366 (369)
T 3cq5_A          324 AWQAFLDR-GVLIRDVG---IAGHLRTTIG---VPEENDAFLDAAAEIIK  366 (369)
T ss_dssp             HHHHHHHT-TEECBCCS---CTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHC-CEEEEECC---CCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence            99999755 99998872   2578999865   78999999999998864

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.98  E-value=2.1e-30  Score=250.87  Aligned_cols=339  Identities=9%  Similarity=-0.045  Sum_probs=245.6

Q ss_pred             cCChHHHHHHHccCcCC-----CCCccHHHHHHHHHHHHHHHhcCCCCc----eEEecCChhHHHHHHHhccCC------
Q 015729           18 VHIPDQVIRAMNRNNED-----YRSPAVPALTKTLLEDIKKIFKTTSGT----PFLIPTTGTGAWESALTNTLS------   82 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~~----~i~~~~g~t~a~~~~~~~~~~------   82 (401)
                      ++.++.+.+++......     ..++...+...++++.+++++|.+...    .+++++|||+|+..++.++..      
T Consensus        52 ~~~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~  131 (452)
T 2dgk_A           52 TWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRM  131 (452)
T ss_dssp             CCCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence            44557788888764421     123445567889999999999997643    489999999999988866542      


Q ss_pred             --CC-----CeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCccccc
Q 015729           83 --PG-----DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN  154 (401)
Q Consensus        83 --~g-----d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~  154 (401)
                        +|     ++|+++. .|+++  ...++..|++++.+++++ ++.+|++++++++++    ++++|++++++|+||.+.
T Consensus       132 ~~~G~~~~~~~vi~~~-~h~~~--~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~----~t~~v~~~~~~n~tG~~~  204 (452)
T 2dgk_A          132 EAAGKPTDKPNLVCGP-VQICW--HKFARYWDVELREIPMRPGQLFMDPKRMIEACDE----NTIGVVPTFGVTYTGNYE  204 (452)
T ss_dssp             HHTTCCCSCCEEEESS-CCHHH--HHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCT----TEEEEECBBSCTTTCBBC
T ss_pred             HhcCCCCCCcEEEECC-CcHHH--HHHHHHcCceEEEEecCCCCCeECHHHHHHHHhh----CCEEEEEEcCCcCCcccC
Confidence              44     5888887 66544  466788999999999886 678999999999974    568999999999999999


Q ss_pred             chHHHHHHhhhc----CCCcEEEEecccccCcce-------eccCcccceEEEecCCCcccCCCcceEEEecHH-HH-HH
Q 015729          155 NLSKVRKLLDEY----RHPALFLVDGVSSICAID-------FRMDEWGIDVALTGSQKALSLPTGMGIVCASPK-AL-EA  221 (401)
Q Consensus       155 ~l~~i~~l~~~~----~~~~~li~D~a~~~~~~~-------~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~-~~-~~  221 (401)
                      |+++|.++|+++    ++|+++|+|++|+.+..+       .+....++|++++++||++.++.++|+++++++ .+ +.
T Consensus       205 ~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~  284 (452)
T 2dgk_A          205 FPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQE  284 (452)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGG
T ss_pred             CHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHH
Confidence            999999999993    239999999999876432       233344799999999999888899999999754 32 32


Q ss_pred             hccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCC
Q 015729          222 SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQK  300 (401)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~  300 (401)
                      +... ..  +..     .... .....++.+....+++.+++..+..+++++..++..++++++.+.|+++ ++++..+.
T Consensus       285 ~~~~-~~--~~~-----~~~~-~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~  355 (452)
T 2dgk_A          285 LVFN-VD--YLG-----GQIG-TFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTG  355 (452)
T ss_dssp             GCEE-EC--CTT-----CCEE-ECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred             hccC-cc--ccC-----CCCC-CcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCC
Confidence            2110 00  100     0000 0001223444456777888887777788999999999999999999998 57776431


Q ss_pred             CccCCceeEEEEcCCC----CCHHHHHHHHHhhCCeEEccCCCC---CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          301 EEWFSDTVTAVIVPSH----INSSEIVRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       301 ~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~~i~v~~g~~~---~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .......++.|.++..    .+..++.+.|.++ ||.++....+   ....++|+++...+|++|+|++++.|+++++++
T Consensus       356 ~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~  434 (452)
T 2dgk_A          356 RPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLR-GWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYL  434 (452)
T ss_dssp             CTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHT-TCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEEecCcccccCCHHHHHHHHHhc-CCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            1001224667777532    3557899999876 8865432211   124579999988889999999999999988765

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.98  E-value=1e-30  Score=249.66  Aligned_cols=323  Identities=15%  Similarity=0.133  Sum_probs=235.9

Q ss_pred             ChHHHHHHHccCcCC----CCCccHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEE
Q 015729           20 IPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISF   90 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   90 (401)
                      .++.+.+++.+....    .. +.......++++.+++++    |.+ .++++++++|+++|+..++.+++++||+|+++
T Consensus        50 ~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~  128 (407)
T 2zc0_A           50 PRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITE  128 (407)
T ss_dssp             CHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEe
Confidence            556777776653221    11 222233567888888877    742 33559999999999999999989999999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHh----ccCCCCceEE-EEEecCCCcccccchH---HHHHH
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA----ADTAHTIKAI-CIVHNETATGVTNNLS---KVRKL  162 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~----~~~~~~~~~i-~~~~~~n~tG~~~~l~---~i~~l  162 (401)
                      .++|++..  ..++..|++++.++.+.++ +|+++++++++    +.  .++++| ++++++||||.+.|.+   +|.++
T Consensus       129 ~p~~~~~~--~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~--~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~  203 (407)
T 2zc0_A          129 NPSYINTL--LAFEQLGAKIEGVPVDNDG-MRVDLLEEKIKELKAKG--QKVKLIYTIPTGQNPMGVTMSMERRKALLEI  203 (407)
T ss_dssp             ESCCHHHH--HHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTT--CCEEEEEECCSSCTTTCCCCCHHHHHHHHHH
T ss_pred             CCChHHHH--HHHHHcCCEEEEcccCCCC-CCHHHHHHHHHhhhccc--CCceEEEECCCCCCCCCcCCCHHHHHHHHHH
Confidence            99887754  4567789999999987654 89999999987    31  256887 4678899999999876   89999


Q ss_pred             hhhcCCCcEEEEecccccCcce----e---ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchH
Q 015729          163 LDEYRHPALFLVDGVSSICAID----F---RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK  235 (401)
Q Consensus       163 ~~~~~~~~~li~D~a~~~~~~~----~---~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~  235 (401)
                      |++  +|+++|+|++|+.+...    .   .....+.++++.|.+|+++++.++|++++++++.+.+.....        
T Consensus       204 ~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~--------  273 (407)
T 2zc0_A          204 ASK--YDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWIIAEGEILKKVLMQKQ--------  273 (407)
T ss_dssp             HHH--HTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTTSCCEEEECCHHHHHHHHHHHT--------
T ss_pred             HHH--cCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCCCcceEEEecCHHHHHHHHHHHH--------
Confidence            999  99999999999865421    1   112224568889999999633357999999888776653210        


Q ss_pred             HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHH-HH-hcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEE
Q 015729          236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLI-FE-EGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAV  311 (401)
Q Consensus       236 ~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~-~~-~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~  311 (401)
                              .  +..+.+...+.++.++++.. .. .++++.++++.++++++.+.|++.  ++.+..+    ..+.++++
T Consensus       274 --------~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~  339 (407)
T 2zc0_A          274 --------P--IDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKP----IAGMFVMF  339 (407)
T ss_dssp             --------T--TTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCC----SBSSEEEE
T ss_pred             --------h--hcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecC----CCcEEEEE
Confidence                    1  11224555555555555532 12 346778888899999999999874  6665443    23457888


Q ss_pred             EcCCCCCHHHHHHHHHhhCCeEEccCCCCC----CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          312 IVPSHINSSEIVRRAWQRYNLSLGLGLNKV----AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       312 ~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~----~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .+|++.+..++.+.|.+++||.+.+|..+.    ..+++||++... +++|+++++++|+++++++
T Consensus       340 ~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~  404 (407)
T 2zc0_A          340 FLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEK  404 (407)
T ss_dssp             ECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence            987777888999999887799999885432    357899987664 8999999999999998764

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.98  E-value=7.4e-31  Score=246.63  Aligned_cols=309  Identities=12%  Similarity=0.072  Sum_probs=232.8

Q ss_pred             CcCChHHHHHHHccCcCC----CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           17 PVHIPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      |.+.++.+++++.+....    ...+. .....++++.+++++|.+++ ++++++|+++|+..++.+++++||+|+++.+
T Consensus        37 ~~~~~~~v~~a~~~~~~~~~~~~~~y~-~~~~~~lr~~la~~~g~~~~-~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p  114 (360)
T 3hdo_A           37 PYPPSPEVVKAILEELGPDGAALRIYP-SASSQKLREVAGELYGFDPS-WIIMANGSDEVLNNLIRAFAAEGEEIGYVHP  114 (360)
T ss_dssp             SSCCCHHHHHHHHHHHTTTCGGGGSCC-CSSCHHHHHHHHHHHTCCGG-GEEEESSHHHHHHHHHHHHCCTTCEEEEESS
T ss_pred             CCCCCHHHHHHHHHHHhcccchhhcCC-CCchHHHHHHHHHHhCcCcc-eEEEcCCHHHHHHHHHHHHhCCCCEEEEcCC
Confidence            566788888888775432    11111 12246899999999997654 4999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEE
Q 015729           93 GQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALF  172 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~l  172 (401)
                      +|++..  ..++..|++++.++.+.++.+  +++++.      .+++++++++++||||.+.|++++.++|++  +|+++
T Consensus       115 ~~~~~~--~~~~~~g~~~~~v~~~~~~~~--~~l~~~------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~--~~~~l  182 (360)
T 3hdo_A          115 SYSYYG--TLAEVQGARVRTFGLTGDFRI--AGFPER------YEGKVFFLTTPNAPLGPSFPLEYIDELARR--CAGML  182 (360)
T ss_dssp             SCTHHH--HHHHHHTCEEEEECBCTTSSB--TTCCSS------BCSSEEEEESSCTTTCCCCCHHHHHHHHHH--BSSEE
T ss_pred             ChHHHH--HHHHHCCCEEEEeeCCCCCCH--HHHHhh------cCCCEEEEeCCCCCCCCCcCHHHHHHHHHH--CCCEE
Confidence            888764  567778999999998766544  333221      135799999999999999999999999999  89999


Q ss_pred             EEecccccCcc--eec-cCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCC
Q 015729          173 LVDGVSSICAI--DFR-MDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP  248 (401)
Q Consensus       173 i~D~a~~~~~~--~~~-~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  248 (401)
                      |+|++|+....  ... ....+.++++.|.+|+++ ++.++|++++++++.+.+.....                    .
T Consensus       183 i~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--------------------~  242 (360)
T 3hdo_A          183 VLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRD--------------------H  242 (360)
T ss_dssp             EEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHSC--------------------S
T ss_pred             EEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhCC--------------------C
Confidence            99999884221  111 122356788999999984 34457999999988777654211                    2


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHh
Q 015729          249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQ  328 (401)
Q Consensus       249 ~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  328 (401)
                      ++.+...++++.++++.  ...+++.++++.++++++.+.|++.|+.+..+     .+.++++.++ +.+..++.+.|.+
T Consensus       243 ~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-----~~~~~~~~~~-~~~~~~l~~~l~~  314 (360)
T 3hdo_A          243 YNLDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSIGYDVIPS-----QGNYLFATPP-DRDGKRVYDGLYA  314 (360)
T ss_dssp             CCSCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHTTCEECCC-----SSSEEEEECT-TCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEEcCC-----CccEEEEECC-CCCHHHHHHHHHH
Confidence            34666666666666664  23467888999999999999999888776532     2346677774 5578899999986


Q ss_pred             hCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          329 RYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       329 ~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      + ||.++++..+..++++||++.   +++|+|+++++|+++.+
T Consensus       315 ~-gi~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~~~~  353 (360)
T 3hdo_A          315 R-KVLVRHFSDPLLAHGMRISIG---TREEMEQTLAALKEIGE  353 (360)
T ss_dssp             T-TEECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred             C-CEEEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence            6 999998765444578999864   89999999999998864

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.98  E-value=9.7e-31  Score=251.37  Aligned_cols=325  Identities=14%  Similarity=0.068  Sum_probs=234.2

Q ss_pred             ChHHHHHHHccCcCC----CCCccHHHHHHHHHHHHHHHh----cCC--CCceEEecCChhHHHHHHHhccCCCCCeEEE
Q 015729           20 IPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIF----KTT--SGTPFLIPTTGTGAWESALTNTLSPGDRIIS   89 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~----g~~--~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~   89 (401)
                      .++.+.+++.+....    ...+.......++++.+++++    |.+  .++++++++|+++|+..++.+++++||+|++
T Consensus        59 ~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~  138 (425)
T 1vp4_A           59 PRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVL  138 (425)
T ss_dssp             CHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             CHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEE
Confidence            567777777664321    011222223456777777777    843  3345999999999999999998999999999


Q ss_pred             EcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccC----CCCceEE-EEEecCCCcccccc---hHHHHH
Q 015729           90 FLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT----AHTIKAI-CIVHNETATGVTNN---LSKVRK  161 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~----~~~~~~i-~~~~~~n~tG~~~~---l~~i~~  161 (401)
                      ..++|++..  ..++..|++++.++.++++ +|++++++++++..    ..++++| ++++++||||.+++   +++|.+
T Consensus       139 ~~p~y~~~~--~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~  215 (425)
T 1vp4_A          139 DDPAYLGAI--NAFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVE  215 (425)
T ss_dssp             EESCCHHHH--HHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred             eCCCcHHHH--HHHHHcCCEEEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHH
Confidence            999887764  5567789999999987654 89999999987510    0256887 47899999999987   567889


Q ss_pred             HhhhcCCCcEEEEecccccCcc----eecc---CcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccch
Q 015729          162 LLDEYRHPALFLVDGVSSICAI----DFRM---DEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW  234 (401)
Q Consensus       162 l~~~~~~~~~li~D~a~~~~~~----~~~~---~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~  234 (401)
                      +|++  +|+++|+|++|+.+..    ....   ...+.++++.|.+|+++++.++|++++++++.+.+....        
T Consensus       216 ~~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l~~~~--------  285 (425)
T 1vp4_A          216 IAEK--YDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAK--------  285 (425)
T ss_dssp             HHHH--TTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECCHHHHHHHHHHH--------
T ss_pred             HHHH--cCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccccccceEEEeeCHHHHHHHHHHh--------
Confidence            9999  9999999999986432    1111   223567899999999963334699999998877665310        


Q ss_pred             HHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHH-HHhcHHHHHHHHHHHHHHHHHHHHHc-----CCccccCCCccCCcee
Q 015729          235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI-FEEGLENVIERHRRLGKATRLAVEAW-----GLKNCTQKEEWFSDTV  308 (401)
Q Consensus       235 ~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~-~~~g~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~~  308 (401)
                          ...      .++.+...++++.++++.. ....+++.++++.++++++.+.|++.     |+.+..+    ..+.+
T Consensus       286 ----~~~------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~----~~g~~  351 (425)
T 1vp4_A          286 ----QSA------DLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKS----EGGLF  351 (425)
T ss_dssp             ----HHH------HSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCC----SBSSE
T ss_pred             ----hhh------cCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecC----CccEE
Confidence                000      1124555555566666542 12236778888889999999999885     5665433    23457


Q ss_pred             EEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC----CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV----AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       309 ~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~----~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +++.++++.+..++.+.|.++ ||.+.+|..+.    .++++||++.. .+++|+++++++|+++++++
T Consensus       352 ~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~-~~~e~i~~~l~~l~~~l~~~  418 (425)
T 1vp4_A          352 IWLTLPEGFDTWEMFEYAKRK-KVFYVPGRVFKVYDEPSPSMRLSFCL-PPDEKIVEGIKRLREVVLEY  418 (425)
T ss_dssp             EEEECCTTCCTTTTHHHHHHH-TEECEEGGGGCTTCCCCSEEEEECSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHC-CCEEECchhhcCCCCCCCeEEEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence            888887666777899999888 99999884321    35789998765 48999999999999998764

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.98  E-value=1.6e-30  Score=253.26  Aligned_cols=348  Identities=12%  Similarity=0.063  Sum_probs=246.4

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCC--C----------ccHHHHHHHHHHHHHHHhcCCCCc---eEEecCChhHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYR--S----------PAVPALTKTLLEDIKKIFKTTSGT---PFLIPTTGTGAW   73 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~--~----------~~~~~~~~~l~~~la~~~g~~~~~---~i~~~~g~t~a~   73 (401)
                      +...+.++..+++++|++++.+.....+  +          ....+...++++.+++++|.+..+   .+++++ |++|+
T Consensus        45 ~~i~L~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~s-Gs~an  123 (483)
T 1rv3_A           45 VGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYS-GSPAN  123 (483)
T ss_dssp             SSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSS-HHHHH
T ss_pred             cCeEEEcCCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECC-cHHHH
Confidence            3567788888899999999988554322  1          123455667889999999998543   255555 55888


Q ss_pred             HHHHhccCCCCCeEEEEcCCcchHHHH------HHHHHcC--CcEEEEeCC-CCCCCChHHHHHHHhccCCCCceEEEEE
Q 015729           74 ESALTNTLSPGDRIISFLIGQFSLLWI------DQQQRLN--FNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIV  144 (401)
Q Consensus        74 ~~~~~~~~~~gd~vl~~~~~~~~~~~~------~~~~~~g--~~~~~v~~~-~~~~~d~~~le~~~~~~~~~~~~~i~~~  144 (401)
                      .+++.++++|||+|+++++.|.++...      ..++..|  .+++.++++ .++.+|++++++++++   +++++|++ 
T Consensus       124 ~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~---~~tklIi~-  199 (483)
T 1rv3_A          124 FAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARL---FHPKLIIA-  199 (483)
T ss_dssp             HHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH---HCCSEEEE-
T ss_pred             HHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhh---cCCcEEEE-
Confidence            888888999999999999877665310      0112223  344444445 4567999999999974   25689988 


Q ss_pred             ecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcc---cceEEEecCCCcccCCCcceEEEecHHHHHH
Q 015729          145 HNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW---GIDVALTGSQKALSLPTGMGIVCASPKALEA  221 (401)
Q Consensus       145 ~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~  221 (401)
                      +++|++ .+.|+++|.++|++  +|+++++|++|+.|....+....   ++|++++|.||+|.|+.| |+++++++... 
T Consensus       200 ~~sn~~-~~~dl~~i~~ia~~--~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~Gprg-G~i~~~~~~~~-  274 (483)
T 1rv3_A          200 GTSCYS-RNLDYGRLRKIADE--NGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRS-  274 (483)
T ss_dssp             CCSSCC-SCCCHHHHHHHHHH--TTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEEECSBCC-
T ss_pred             eCCcCC-CcCCHHHHHHHHHH--cCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCCc-eEEEEcchhhh-
Confidence            888888 88999999999999  99999999999876544333333   689999999999988887 99999876421 


Q ss_pred             hccCCCCccccchHHHHHH-hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCC
Q 015729          222 SKTAKSVRVFFDWKDYIKF-YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK  300 (401)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  300 (401)
                      +..........++...... ...+  ..++++...++++.++++.....+++...+++.++++++.+.|.++|+++..+.
T Consensus       275 ~~~~~g~~~~y~~~~~~~~~~~~~--~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  352 (483)
T 1rv3_A          275 VDPKTGKEILYNLESLINSAVFPG--LQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGG  352 (483)
T ss_dssp             -------CCBCCHHHHHHHHHTTT--TCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS
T ss_pred             hccccCcchhhHHHHHhhhhcCCc--ccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCEeccCC
Confidence            1100000000122221111 1111  144677888888888998876667888999999999999999999898876532


Q ss_pred             CccCCceeEEEEcC-CCCCHHHHHHHHHhhCCeEEc----cCCC-CCCCcEEEEeecccCC----HHHHHHHHHHHHHHH
Q 015729          301 EEWFSDTVTAVIVP-SHINSSEIVRRAWQRYNLSLG----LGLN-KVAGKVFRIGHLGHLN----ELQLLGCLAGVEMIL  370 (401)
Q Consensus       301 ~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~~i~v~----~g~~-~~~~~~~Ri~~~~~~~----~~di~~~~~~i~~~l  370 (401)
                      .   .+.++++.++ .+.+..++.+.|.+ .||.+.    +|.. ....+.+||++...++    ++|+++++++|++++
T Consensus       353 ~---~~~~~~v~~~~~g~~~~~~~~~L~~-~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l  428 (483)
T 1rv3_A          353 S---DNHLILVDLRSKGTDGGRAEKVLEA-CSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGI  428 (483)
T ss_dssp             C---SSSEEEEEGGGGTCCHHHHHHHHHH-TTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             C---CCceEEEeccCCCCCHHHHHHHHHh-CCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHH
Confidence            1   2235566663 35677888888865 599998    7642 2235689999887666    999999999999998


Q ss_pred             Hh
Q 015729          371 KD  372 (401)
Q Consensus       371 ~~  372 (401)
                      +.
T Consensus       429 ~~  430 (483)
T 1rv3_A          429 EL  430 (483)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.98  E-value=4.4e-31  Score=252.25  Aligned_cols=320  Identities=13%  Similarity=0.089  Sum_probs=231.1

Q ss_pred             CChHHHHHHHccCcCCC-CCccHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           19 HIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      +.++.+.+++.+..... ..+.......++++.+++++    |.+ .++++++++|+++|+..++.+++++||+|+++.+
T Consensus        54 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~  133 (406)
T 1xi9_A           54 QPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGP  133 (406)
T ss_dssp             CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCC
Confidence            45677777776643211 11221223456666666666    322 3355999999999999999888999999999999


Q ss_pred             CcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcC
Q 015729           93 GQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR  167 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~  167 (401)
                      +|++..  ..++..|++++.++.+.  ++.+|++++++.+++    +++++++++++||||.+++   +++|.++|++  
T Consensus       134 ~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~--  205 (406)
T 1xi9_A          134 SYPPYT--GLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD----RTKAIAVINPNNPTGALYDKKTLEEILNIAGE--  205 (406)
T ss_dssp             CCHHHH--HHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--
T ss_pred             CCccHH--HHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCc----CceEEEEECCCCCCCCCcCHHHHHHHHHHHHH--
Confidence            887654  55677899999999864  345799999999874    5799999999999999986   8889999999  


Q ss_pred             CCcEEEEecccccCcc---eeccCc--ccc-eEEEecCCCcccCCCc--ceEEE--ecH----HHHHHhccCCCCccccc
Q 015729          168 HPALFLVDGVSSICAI---DFRMDE--WGI-DVALTGSQKALSLPTG--MGIVC--ASP----KALEASKTAKSVRVFFD  233 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~---~~~~~~--~~~-di~~~s~~K~l~g~~g--~G~l~--~~~----~~~~~~~~~~~~~~~~~  233 (401)
                      +|+++|+|++|+.+..   ......  .+. |++++|.||+++ ++|  +|+++  .++    ++.+.+...        
T Consensus       206 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~l~~~l~~~--------  276 (406)
T 1xi9_A          206 YEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYF-ATGWRLGYMYFVDPENKLSEVREAIDRL--------  276 (406)
T ss_dssp             HTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTC-CGGGCCEEEEEECTTCTTHHHHHHHHHH--------
T ss_pred             cCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccC-CCccEEEEEEEecCchhHHHHHHHHHHH--------
Confidence            9999999999986542   111111  356 899999999984 444  79998  888    777665431        


Q ss_pred             hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEE
Q 015729          234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVI  312 (401)
Q Consensus       234 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~  312 (401)
                           ....      ++++...+.++.++++.. .+++++.++++.++++++.+.|+++ |+.+..+.    .+.++++.
T Consensus       277 -----~~~~------~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~  340 (406)
T 1xi9_A          277 -----ARIR------LCPNTPAQFAAIAGLTGP-MDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQ----GAFYIFPK  340 (406)
T ss_dssp             -----HHHT------CCSCSHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCC----BSSEECCE
T ss_pred             -----HHhh------cCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCC----eeEEEEEe
Confidence                 1111      234555555666666422 1236778888999999999999887 77665432    34456666


Q ss_pred             cCC--CCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          313 VPS--HINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       313 ~~~--~~~~~~l~~~L~~~~~i~v~~g~~~~--~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ++.  +.+..++.+.|.++.||.+.++....  .++++||++.  .+++++++++++|+++++++
T Consensus       341 ~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~~~~~l~~~l~~~  403 (406)
T 1xi9_A          341 IEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMDRFEKFMKER  403 (406)
T ss_dssp             ECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHHHC
T ss_pred             cCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHHH
Confidence            754  45788899988744499998885432  2568999876  79999999999999998764

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.98  E-value=8.7e-31  Score=250.43  Aligned_cols=318  Identities=17%  Similarity=0.132  Sum_probs=232.9

Q ss_pred             CChHHHHHHHccCcCCC-CCccHHHHHHHHHHHHHHHhcC----C-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           19 HIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFKT----T-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~g~----~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      +.++.+++++ +..... ..+.......++++.++++++.    + .++++++++|+++|+..++.+++++||+|+++.+
T Consensus        56 ~~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~  134 (409)
T 2gb3_A           56 KTPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEP  134 (409)
T ss_dssp             CCCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred             CCCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCC
Confidence            4567788887 543221 1222223345777777777752    2 3355999999999999999988999999999999


Q ss_pred             CcchHHHHHHHHHcCCcEEEEeCCCCCCCC-hHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCC
Q 015729           93 GQFSLLWIDQQQRLNFNVDVVESDWGEGAK-LDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRH  168 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d-~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~  168 (401)
                      +|++..  ..++..|++++.++.+.+..++ ++++++++++    +++++++++++||||.+++   +++|.++|++  +
T Consensus       135 ~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~l~~----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~--~  206 (409)
T 2gb3_A          135 FYANYN--AFAKIAGVKLIPVTRRMEEGFAIPQNLESFINE----RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAER--H  206 (409)
T ss_dssp             CCTHHH--HHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--T
T ss_pred             CchhHH--HHHHHcCCEEEEeccCCCCCCccHHHHHHhhCc----CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHH--c
Confidence            988764  4567789999999987522233 8888888763    5799999999999999975   7889999999  9


Q ss_pred             CcEEEEecccccCcc---eec-cCc-ccceEEEecCCCcccCCCc--ceEEEecH-HHHHHhccCCCCccccchHHHHHH
Q 015729          169 PALFLVDGVSSICAI---DFR-MDE-WGIDVALTGSQKALSLPTG--MGIVCASP-KALEASKTAKSVRVFFDWKDYIKF  240 (401)
Q Consensus       169 ~~~li~D~a~~~~~~---~~~-~~~-~~~di~~~s~~K~l~g~~g--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
                      |+++|+|++|+.+..   ... ... .+.|++++|.||+++ ++|  +|++++++ ++.+.+....            . 
T Consensus       207 ~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~l~~~l~~~~------------~-  272 (409)
T 2gb3_A          207 GLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFS-ACGARVGCLITRNEELISHAMKLA------------Q-  272 (409)
T ss_dssp             TCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTT-CGGGCCEEEECSCHHHHHHHHHHH------------H-
T ss_pred             CCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccC-CccceEEEEEECcHHHHHHHHHHH------------h-
Confidence            999999999986543   112 222 357999999999984 455  79999998 7776654310            0 


Q ss_pred             hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCcc-ccCCCccCCceeEEEEcCCCCCH
Q 015729          241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKN-CTQKEEWFSDTVTAVIVPSHINS  319 (401)
Q Consensus       241 ~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~  319 (401)
                         .  +. +++...++++.++++.. ..++++.++++.++++++.+.|+++|+++ ..+    ..+.++++.++ +.+.
T Consensus       273 ---~--~~-~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~~~~~~~~~~~-~~~~  340 (409)
T 2gb3_A          273 ---G--RL-APPLLEQIGSVGLLNLD-DSFFDFVRETYRERVETVLKKLEEHGLKRFTKP----SGAFYITAELP-VEDA  340 (409)
T ss_dssp             ---H--SC-CCCHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCC----SBSSEEEEECS-SSCH
T ss_pred             ---c--cC-CCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCC----CeeEEEEEEeC-CCCH
Confidence               1  11 35665556666666431 23467788889999999999999888776 433    23456777886 5678


Q ss_pred             HHHHHHHHhh-----CCeEEccCCCC-----CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          320 SEIVRRAWQR-----YNLSLGLGLNK-----VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       320 ~~l~~~L~~~-----~~i~v~~g~~~-----~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .++.+.|.++     +||.+.++...     ..++++||++.  ++++++++++++|+++++++
T Consensus       341 ~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  402 (409)
T 2gb3_A          341 EEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMF  402 (409)
T ss_dssp             HHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHh
Confidence            8999999876     59999887432     12578999876  69999999999999998764

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.97  E-value=5.3e-30  Score=245.91  Aligned_cols=324  Identities=10%  Similarity=0.021  Sum_probs=242.1

Q ss_pred             CcCChHHHHHHHccCcC---CCCCccHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcC
Q 015729           17 PVHIPDQVIRAMNRNNE---DYRSPAVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLI   92 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~---~~~~~~~~~~~~~l~~~la~~~g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~   92 (401)
                      ..+.++.+++++.+...   ..+.....+...++.+.+++.++.+ .++++++++|+++|++.++.++.++||+|++..+
T Consensus        72 ~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~  151 (421)
T 3l8a_A           72 DFLPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSP  151 (421)
T ss_dssp             CSCCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEEES
T ss_pred             CCCCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCC
Confidence            44567888888876432   1222233677788888888888843 3355999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHcCCcEEEEeCC-CC--CCCChHHHHHHHhccCCCCceEEEEEecCCCccccc---chHHHHHHhhhc
Q 015729           93 GQFSLLWIDQQQRLNFNVDVVESD-WG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN---NLSKVRKLLDEY  166 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~~~~v~~~-~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~---~l~~i~~l~~~~  166 (401)
                      +|++..  ..++..|.+++.++.+ .+  +.+|++++++++++   ++++++++++++||+|.+.   ++++|.++|++ 
T Consensus       152 ~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~---~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~-  225 (421)
T 3l8a_A          152 VYYPFA--RTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIID---NNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKK-  225 (421)
T ss_dssp             CCHHHH--HHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHH---TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHH-
T ss_pred             CcHHHH--HHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhc---cCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHH-
Confidence            888764  4567789999999975 23  25799999999974   3579999999999999984   58889999999 


Q ss_pred             CCCcEEEEecccccCcc------ee-c--cCcccceEEEecCCCccc-CCCcceEEEec-HHHHHHhccCCCCccccchH
Q 015729          167 RHPALFLVDGVSSICAI------DF-R--MDEWGIDVALTGSQKALS-LPTGMGIVCAS-PKALEASKTAKSVRVFFDWK  235 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~------~~-~--~~~~~~di~~~s~~K~l~-g~~g~G~l~~~-~~~~~~~~~~~~~~~~~~~~  235 (401)
                       +|+++|+|++|+.+..      ++ .  .+..+.++++.|.+|+++ ++.++|+++++ +++.+.+....         
T Consensus       226 -~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~---------  295 (421)
T 3l8a_A          226 -HGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQ---------  295 (421)
T ss_dssp             -HTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHH---------
T ss_pred             -cCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHH---------
Confidence             9999999999875421      11 1  122356789999999995 34456999988 77766554310         


Q ss_pred             HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcC
Q 015729          236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVP  314 (401)
Q Consensus       236 ~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~  314 (401)
                         ..   .  ..++++...++++.++++.. ...+++..++..++.+++.+.|++. ++.+..+.    ...+.++.++
T Consensus       296 ---~~---~--~~~~~n~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~----~~~~~~v~~~  362 (421)
T 3l8a_A          296 ---LA---N--NQHEVPTVGMIATQAAFQYG-KPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPE----GTYLVWLDFS  362 (421)
T ss_dssp             ---HH---T--TCSCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCS----BSSEEEEECG
T ss_pred             ---Hh---c--ccCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCC----eeEEEEEecc
Confidence               00   1  12357777777777777742 2236788889999999999999986 77776542    3456668886


Q ss_pred             C-CCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          315 S-HINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       315 ~-~~~~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      . +.+..++.+.|.+++||.+.+|..+  ..++++||++.  .+++++++++++|+++++
T Consensus       363 ~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~  420 (421)
T 3l8a_A          363 AYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA--TPKNTVQEALSRIISVFG  420 (421)
T ss_dssp             GGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred             ccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence            4 4677899999987679999987433  23578999877  489999999999998864

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.97  E-value=4.1e-30  Score=245.11  Aligned_cols=319  Identities=16%  Similarity=0.189  Sum_probs=230.7

Q ss_pred             ChHHHHHHHccCcCC-----C---CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--CCCCCeEEE
Q 015729           20 IPDQVIRAMNRNNED-----Y---RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIIS   89 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~-----~---~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~~~gd~vl~   89 (401)
                      .+|.+++++.+....     +   ..+...+...++++.+++++|.+  +.+++++| +.++..++..+  ..+||+|++
T Consensus        61 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~--~~i~~~sG-~~a~~~~~~~l~~~~~gd~Vl~  137 (401)
T 2bwn_A           61 QHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKE--AALVFSSA-YNANDATLSTLRVLFPGLIIYS  137 (401)
T ss_dssp             GCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCS--EEEEESCH-HHHHHHHHHHHHHHSTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCC--cEEEECCc-HHHHHHHHHHHhcCCCCCEEEE
Confidence            345677776663211     1   11234467889999999999873  44677555 55777766554  358999999


Q ss_pred             EcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCC
Q 015729           90 FLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP  169 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~  169 (401)
                      ..++|++..  ..++..|++++.++.+     |++++++.+++...++++++++++++||||.+.|+++|.++|++  +|
T Consensus       138 ~~~~~~~~~--~~~~~~g~~~~~v~~~-----d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~--~~  208 (401)
T 2bwn_A          138 DSLNHASMI--EGIKRNAGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEE--FG  208 (401)
T ss_dssp             ETTCCHHHH--HHHHHSCCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHH--HT
T ss_pred             CchhhHHHH--HHHHHcCCeEEEEcCC-----CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHH--cC
Confidence            999887765  3456789999999865     78999998875321367999999999999999999999999999  99


Q ss_pred             cEEEEecccccCcce-----e-ccCc--ccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHh
Q 015729          170 ALFLVDGVSSICAID-----F-RMDE--WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFY  241 (401)
Q Consensus       170 ~~li~D~a~~~~~~~-----~-~~~~--~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (401)
                      +++|+|++|+.|...     + ....  .+.|+++.|.+|+++ .+| |+++.++++.+.+.....          ...+
T Consensus       209 ~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~-~~G-G~~~~~~~~~~~l~~~~~----------~~~~  276 (401)
T 2bwn_A          209 ALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYG-VFG-GYIAASARMVDAVRSYAP----------GFIF  276 (401)
T ss_dssp             CEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTC-SCC-EEEEECHHHHHHHHHHCH----------HHHT
T ss_pred             CEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhcc-CCC-CEEecCHHHHHHHHHhCc----------Ccee
Confidence            999999999854321     0 0011  136899999999995 556 999999887665542100          0011


Q ss_pred             hcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHH
Q 015729          242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSE  321 (401)
Q Consensus       242 ~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (401)
                      .     .++++ ..++++.++++.+...++++.+++++++++++.+.|+++|+++..+    .+ .++++.++++.+..+
T Consensus       277 ~-----~~~~~-~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~-~~~~~~~~~~~~~~~  345 (401)
T 2bwn_A          277 S-----TSLPP-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDH----GS-HIVPVVIGDPVHTKA  345 (401)
T ss_dssp             S-----BCCCH-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC----SS-SCEEEECCCHHHHHH
T ss_pred             c-----CCCCH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccCC----CC-CeEEEEeCChHHHHH
Confidence            1     12233 6677788888877665678899999999999999999888777643    23 367888865445678


Q ss_pred             HHHHHHhhCCeEEccCCCCC---CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          322 IVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       322 l~~~L~~~~~i~v~~g~~~~---~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +.+.|.++.||.+.++..+.   ..+++|+++..+++++|+++++++|+++++++
T Consensus       346 ~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~  400 (401)
T 2bwn_A          346 VSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC  400 (401)
T ss_dssp             HHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence            99888644499998875422   12589999988889999999999999988764

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.97  E-value=1.3e-30  Score=246.43  Aligned_cols=314  Identities=13%  Similarity=0.010  Sum_probs=228.3

Q ss_pred             CcCChHHHHHHHccCcCCCCCcc----HHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHhccCCC--CCeEEE
Q 015729           17 PVHIPDQVIRAMNRNNEDYRSPA----VPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLSP--GDRIIS   89 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~~~~----~~~~~~~l~~~la~~~g~~-~~~~i~~~~g~t~a~~~~~~~~~~~--gd~vl~   89 (401)
                      +.+.++.+.+++.+.......+.    ..+..+++.+.+++.+|.+ .++++++++|+++|+..++.+++++  ||+|++
T Consensus        34 ~~~~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~  113 (376)
T 3ezs_A           34 QFETPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAY  113 (376)
T ss_dssp             CSCCCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHTTTCSSCEEEE
T ss_pred             CCCCCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHcCCCCCCEEEE
Confidence            45567899999988652211121    2344444444444445763 3356999999999999999999999  999999


Q ss_pred             EcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhc
Q 015729           90 FLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY  166 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~  166 (401)
                      ..++|++..  ..++..|++++.++.+.++.+++ ++++.+.+    +++++++++++||||.+++   +++|.++|++ 
T Consensus       114 ~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~-~l~~~~~~----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~-  185 (376)
T 3ezs_A          114 PNPFYQIYE--GAAKFIKAKSLLMPLTKENDFTP-SLNEKELQ----EVDLVILNSPNNPTGRTLSLEELISWVKLALK-  185 (376)
T ss_dssp             EESCCTHHH--HHHHHTTCEEEEEECCGGGTSCC-CCCHHHHH----HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHH-
T ss_pred             ecCCcHhHH--HHHHHcCCEEEEcccCCCCCcch-hHHhhhcc----CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHH-
Confidence            999888764  55778899999999887655666 77777764    4589999999999999987   5567777999 


Q ss_pred             CCCcEEEEecccccCcc---eeccC---------cccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccc
Q 015729          167 RHPALFLVDGVSSICAI---DFRMD---------EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFD  233 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~---~~~~~---------~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~  233 (401)
                       +|+++|+|++|+.+..   +....         ..+.++++.|.+|+++ ++.++|+++.++++.+.+....       
T Consensus       186 -~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~-------  257 (376)
T 3ezs_A          186 -HDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFR-------  257 (376)
T ss_dssp             -HTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHH-------
T ss_pred             -cCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeCHHHHHHHHHHH-------
Confidence             9999999999986432   11110         3567899999999984 3445799999999877665321       


Q ss_pred             hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEc
Q 015729          234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV  313 (401)
Q Consensus       234 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~  313 (401)
                                 ....++.+...++++.++++.  ...+++.++++.++++.+.+.|+  ++.  .+    ..+.++++.+
T Consensus       258 -----------~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~--~~~--~~----~~~~~~~~~~  316 (376)
T 3ezs_A          258 -----------AYLGYTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK--NTL--IY----PYSFYVYLPV  316 (376)
T ss_dssp             -----------TTTCCCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST--TCC--CC----SBSSEEEEEC
T ss_pred             -----------hhhcCCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc--CCC--CC----CcceEEEEEC
Confidence                       011334666666666666653  22356777888888888888776  544  21    2445778888


Q ss_pred             CCCCCHHHHHHHHHhhCCeEEccCCCC----CCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          314 PSHINSSEIVRRAWQRYNLSLGLGLNK----VAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       314 ~~~~~~~~l~~~L~~~~~i~v~~g~~~----~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      +   +..++.+.|.+++||.+.+|..+    ..++++||++..  +++|+++++++|++++++
T Consensus       317 ~---~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l~~  374 (376)
T 3ezs_A          317 Q---NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY--DTPLLEKPLEIIETYREN  374 (376)
T ss_dssp             S---CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS--CHHHHHHHHHHHHHHHCC
T ss_pred             C---CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence            5   67889999987459999988543    245789998765  999999999999998864

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.97  E-value=7.9e-30  Score=242.91  Aligned_cols=324  Identities=11%  Similarity=0.062  Sum_probs=233.7

Q ss_pred             cCChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           18 VHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      .+.++.+.+++.+.... ...+...  ..++++.+++++    |.+ .++++++++|+++|+..++.+++++||+|++..
T Consensus        43 ~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~  120 (399)
T 1c7n_A           43 FKNPPELIEGLKKYLDETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIIT  120 (399)
T ss_dssp             SCCCHHHHHHHHHHHHHCCCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             CCCCHHHHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcC
Confidence            44667788877764321 1111111  456666666654    632 234599999999999999999899999999999


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCC-CC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhh
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESD-WG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE  165 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~-~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~  165 (401)
                      ++|++..  ..++..|++++.++.+ .+  +.+|++++++++++   ++++++++++++||||.+.|   +++|.++|++
T Consensus       121 p~~~~~~--~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~  195 (399)
T 1c7n_A          121 PVYYPFF--MAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD---KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLK  195 (399)
T ss_dssp             SCCTHHH--HHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC---TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHH
T ss_pred             CCcHhHH--HHHHHcCCEEEecccccCCCCEEEcHHHHHHHhcc---CCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHH
Confidence            9888765  4567789999988875 32  24899999999974   35799999999999999998   8889999999


Q ss_pred             cCCCcEEEEecccccCcc----eeccCc-----ccceEEEecCCCccc-CCCcceEEEec-HHHHHHhccCCCCccccch
Q 015729          166 YRHPALFLVDGVSSICAI----DFRMDE-----WGIDVALTGSQKALS-LPTGMGIVCAS-PKALEASKTAKSVRVFFDW  234 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~~----~~~~~~-----~~~di~~~s~~K~l~-g~~g~G~l~~~-~~~~~~~~~~~~~~~~~~~  234 (401)
                        +|+++|+|++|+.+..    ..+...     .+.++++.|.+|+++ ++.++|+++++ +++.+.+....        
T Consensus       196 --~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~--------  265 (399)
T 1c7n_A          196 --SDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSR--------  265 (399)
T ss_dssp             --SSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHH--------
T ss_pred             --cCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHH--------
Confidence              9999999999986432    112221     245789999999985 22346999986 56766654310        


Q ss_pred             HHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCceeEEEE
Q 015729          235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVI  312 (401)
Q Consensus       235 ~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~  312 (401)
                          ..+  +   .++++...++++.++++.. ...+++.++++.++++++.+.|++ + |+.+..+    ..+.++++.
T Consensus       266 ----~~~--~---~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~~  331 (399)
T 1c7n_A          266 ----DAT--S---GMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLI----EGTYLQWID  331 (399)
T ss_dssp             ----HHT--T---CCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCC----SBSSEEEEE
T ss_pred             ----hhc--c---cCCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecC----CceEEEEEE
Confidence                000  0   1245666666666666532 234677888899999999999998 6 7766543    234566788


Q ss_pred             cCC-CCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          313 VPS-HINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       313 ~~~-~~~~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      +++ +.+..++.+.|.+++||.+.+|..+  ..++++||++..  +++++++++++|+++++++.
T Consensus       332 ~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~  394 (399)
T 1c7n_A          332 FRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA--PSSVIQESLERLNKALKDLK  394 (399)
T ss_dssp             CGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHHHHC
T ss_pred             cccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc--CHHHHHHHHHHHHHHHHHHH
Confidence            864 3578889999975559999888543  235789998876  48999999999999998753

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.97  E-value=1.5e-30  Score=244.11  Aligned_cols=334  Identities=13%  Similarity=0.103  Sum_probs=237.8

Q ss_pred             CCCCCcccccCCCcCChHHHHHHHccCcCCC-CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCC
Q 015729            5 YAPGKNHLFVPGPVHIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSP   83 (401)
Q Consensus         5 ~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~   83 (401)
                      +.|+..|+....+.+.++.+++++.+....+ ......+...++++.+++++|.++. ++++++|+++|+..++.+++++
T Consensus        11 ~~p~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~g~~~~-~v~~~~g~t~a~~~~~~~~~~~   89 (359)
T 1svv_A           11 AKPKPYSFVNDYSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDA-DVHFISGGTQTNLIACSLALRP   89 (359)
T ss_dssp             ----CEECSCSCSSCCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTS-EEEEESCHHHHHHHHHHHHCCT
T ss_pred             CCCeeEEecCCCcCCCCHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCCCCc-cEEEeCCchHHHHHHHHHHhCC
Confidence            3456678877777788999999998865432 2334457788999999999997654 4999999999999999998999


Q ss_pred             CCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccC---CCCceEEEEEecCCCcccccc---hH
Q 015729           84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT---AHTIKAICIVHNETATGVTNN---LS  157 (401)
Q Consensus        84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~---~~~~~~i~~~~~~n~tG~~~~---l~  157 (401)
                      ||+|+++.++|+++.....++..|++++.++.+ ++.+|++++++.+++..   ..++++++++++ ||||.+.|   ++
T Consensus        90 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~  167 (359)
T 1svv_A           90 WEAVIATQLGHISTHETGAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELE  167 (359)
T ss_dssp             TEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHH
T ss_pred             CCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHH
Confidence            999999999888765211467789999999986 67799999999997631   113799999988 79999998   88


Q ss_pred             HHHHHhhhcCCCcEEEEeccc---ccCcceeccCc----ccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCcc
Q 015729          158 KVRKLLDEYRHPALFLVDGVS---SICAIDFRMDE----WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV  230 (401)
Q Consensus       158 ~i~~l~~~~~~~~~li~D~a~---~~~~~~~~~~~----~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~  230 (401)
                      +|.++|++  +|+++|+|++|   +.+..+.+...    ...|++++|++|+ +++.|+|++++++++.+.+...     
T Consensus       168 ~i~~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l~~~~~~~~~~~~~-----  239 (359)
T 1svv_A          168 DISASCKE--HGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGMFGEALIILNDALKPNARHL-----  239 (359)
T ss_dssp             HHHHHHHH--HTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCSSCEEEEECSGGGCTTHHHH-----
T ss_pred             HHHHHHHH--hCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC-CCCCceEEEEEcccHHHHHHHH-----
Confidence            89999999  99999999998   44443333222    3579999999996 4677889999998875544321     


Q ss_pred             ccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEE
Q 015729          231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA  310 (401)
Q Consensus       231 ~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~  310 (401)
                              . ...+.  ..+.+....+++.   ..+.+.++++..+++.++++++.+.|+..|+++..+.    ...+++
T Consensus       240 --------~-~~~~~--~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~----~~~~~~  301 (359)
T 1svv_A          240 --------I-KQRGA--LMAKGWLLGIQFE---VLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPS----ASNQLF  301 (359)
T ss_dssp             --------H-HHTTC--CCTTTHHHHHHHH---HHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCC----SSSEEC
T ss_pred             --------H-hcCCc--ccccchhhHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHhccCCeEEccCC----ccceEE
Confidence                    0 00111  1111222222222   2233334678889999999999999943488776432    223555


Q ss_pred             EEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       311 ~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +.++     .++.+.|.+++||.+.... ....+++||++....+++|+++++++|+++++++
T Consensus       302 ~~~~-----~~~~~~l~~~~gi~v~~~~-~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  358 (359)
T 1svv_A          302 PILE-----NTMIAELNNDFDMYTVEPL-KDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST  358 (359)
T ss_dssp             BEEE-----HHHHHHHTTTEECEEEEEE-TTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred             EEcC-----HHHHHHHHHhcCEEEEecc-cCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence            5553     4788888876688873211 1234679998777789999999999999887653

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.97  E-value=1.8e-29  Score=246.99  Aligned_cols=342  Identities=12%  Similarity=0.027  Sum_probs=250.8

Q ss_pred             CCcCChHHHHHHHccCcCC-----CCCccHHHHHHHHHHHHHHHhcCC--CCc--eEEecCChhHHHHHHHhccCCC---
Q 015729           16 GPVHIPDQVIRAMNRNNED-----YRSPAVPALTKTLLEDIKKIFKTT--SGT--PFLIPTTGTGAWESALTNTLSP---   83 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~--~~~--~i~~~~g~t~a~~~~~~~~~~~---   83 (401)
                      ++..+++.+.+++......     ...+...++..++++.+++++|.+  +.+  ..++++|+++|+..++.++..+   
T Consensus        64 ~t~~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~  143 (502)
T 3hbx_A           64 VTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQN  143 (502)
T ss_dssp             SCCCCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhH
Confidence            4566778888888774322     123445567778999999999997  332  2346899999999887665443   


Q ss_pred             -----CC-----eEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC-CCCChHHHHHHHhccCCCCceEEEEEecCCCccc
Q 015729           84 -----GD-----RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGV  152 (401)
Q Consensus        84 -----gd-----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~  152 (401)
                           |+     +|+++.+.|++.  ...++..|++++.++++.+ +.+|++++++++++    ++++|++++++|+||.
T Consensus       144 ~~~~~G~~~~~~~vi~~~~~h~s~--~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~----~t~~v~~~~~~n~tG~  217 (502)
T 3hbx_A          144 KRKAEGKPVDKPNIVTGANVQVCW--EKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDE----NTICVAAILGSTLNGE  217 (502)
T ss_dssp             HHHHTTCCCSCCEEEEETTCCHHH--HHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCT----TEEEEEEEBSCTTTCC
T ss_pred             HHHhcCCCCCCcEEEEcCCchHHH--HHHHHHcCceeEEEecCCCcCcCCHHHHHHHHhh----CCEEEEEecCCCCCCc
Confidence                 66     899999887765  4668889999999998876 78999999999985    5689999999999999


Q ss_pred             ccchHHHHHHhhhc----CCCcEEEEecccccCcc-------eeccCcccceEEEecCCCcccCCCcceEEEecHH-HHH
Q 015729          153 TNNLSKVRKLLDEY----RHPALFLVDGVSSICAI-------DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPK-ALE  220 (401)
Q Consensus       153 ~~~l~~i~~l~~~~----~~~~~li~D~a~~~~~~-------~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~-~~~  220 (401)
                      +.|+++|.++|+++    ++|+++|+|+||+.+..       +.++...++|++.+++||++.++.|+|+++++++ .+.
T Consensus       218 ~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~  297 (502)
T 3hbx_A          218 FEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLP  297 (502)
T ss_dssp             BCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSC
T ss_pred             ccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHhh
Confidence            99999999999992    22999999999985542       2333445899999999999988999998887654 321


Q ss_pred             HhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccC
Q 015729          221 ASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQ  299 (401)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~  299 (401)
                      ........  |..      .......+.++.+...++++.+++..+..+++.+..++..++++++.+.|+++ ++++..+
T Consensus       298 ~~~~~~~~--yl~------~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~  369 (502)
T 3hbx_A          298 EELIFHIN--YLG------ADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSK  369 (502)
T ss_dssp             GGGCEEEC--SSS------SCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSC
T ss_pred             HHhccCcc--ccc------CCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence            11110000  000      00000111234555567788889988888888999999999999999999998 4777653


Q ss_pred             CCccCCceeEEEEcCCC--CCHHHHHHHHHhhCCeEEccCCCC---CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          300 KEEWFSDTVTAVIVPSH--INSSEIVRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       300 ~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~~~i~v~~g~~~---~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      .+  .. .++.|.++.+  .+..++.+.|.++ ||.+.....+   ....++||++...+|++|++.+++.|+++++++.
T Consensus       370 ~~--~~-~~v~f~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~l~  445 (502)
T 3hbx_A          370 DE--GV-PLVAFSLKDSSCHTEFEISDMLRRY-GWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELD  445 (502)
T ss_dssp             SS--SS-SEEEEEESSCSSCCHHHHHHHHHTT-TCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CC--Cc-eEEEEEecCCCcCCHHHHHHHHHhC-CcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            11  23 4677887542  5667999999876 8886543222   1235799999999999999999999999987764


Q ss_pred             C
Q 015729          375 Y  375 (401)
Q Consensus       375 ~  375 (401)
                      .
T Consensus       446 ~  446 (502)
T 3hbx_A          446 E  446 (502)
T ss_dssp             T
T ss_pred             h
Confidence            3

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.97  E-value=2.3e-29  Score=239.02  Aligned_cols=323  Identities=13%  Similarity=0.043  Sum_probs=232.8

Q ss_pred             cCChHHHHHHHccCcCCC-CCccHHHHHHH-HHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEE
Q 015729           18 VHIPDQVIRAMNRNNEDY-RSPAVPALTKT-LLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISF   90 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~-l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   90 (401)
                      .+.++.+.+++.+..... ..+...  ..+ +++.+++++    |.+ .++++++++|+++|+..++.+++++||+|+++
T Consensus        40 ~~~~~~v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~  117 (390)
T 1d2f_A           40 FATAPCIIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIH  117 (390)
T ss_dssp             SCCCHHHHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEE
T ss_pred             CCCCHHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEc
Confidence            356778888887754221 111111  345 777777765    522 33559999999999999999999999999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeCCCCC---CCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhh
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVESDWGE---GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLD  164 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~---~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~  164 (401)
                      .++|++..  ..++..|++++.++.+.++   .+|++++++++++   .+++++++++++||||.+.|   +++|.++|+
T Consensus       118 ~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~  192 (390)
T 1d2f_A          118 TPAYDAFY--KAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK---PECKIMLLCSPQNPTGKVWTCDELEIMADLCE  192 (390)
T ss_dssp             ESCCHHHH--HHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS---TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHH
T ss_pred             CCCcHHHH--HHHHHCCCEEEEeecccCCCccccCHHHHHHHhcc---CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHH
Confidence            99888764  4567789999999986542   4799999999974   36799999999999999987   788999999


Q ss_pred             hcCCCcEEEEecccccCcc----eeccCcc--c-ceEEEecCCCccc-CCCcceEEEec-HHHHHHhccCCCCccccchH
Q 015729          165 EYRHPALFLVDGVSSICAI----DFRMDEW--G-IDVALTGSQKALS-LPTGMGIVCAS-PKALEASKTAKSVRVFFDWK  235 (401)
Q Consensus       165 ~~~~~~~li~D~a~~~~~~----~~~~~~~--~-~di~~~s~~K~l~-g~~g~G~l~~~-~~~~~~~~~~~~~~~~~~~~  235 (401)
                      +  +|+++|+|++|+.+..    ..+....  + .|. +.|.+|+++ ++.++|+++++ +++.+.+...          
T Consensus       193 ~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~----------  259 (390)
T 1d2f_A          193 R--HGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSA----------  259 (390)
T ss_dssp             H--TTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHH----------
T ss_pred             H--cCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEEECCHHHHHHHHHH----------
Confidence            9  9999999999986432    1122222  1 266 999999984 23346999985 6766655421          


Q ss_pred             HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCceeEEEEc
Q 015729          236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVIV  313 (401)
Q Consensus       236 ~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~  313 (401)
                            ..|.+..++++...++++.++++.. ...+++.++++.++++++.+.|++ + |+.+..+    ..+.++++.+
T Consensus       260 ------~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~~~  328 (390)
T 1d2f_A          260 ------LKGRDGLSSPSVLALTAHIAAYQQG-APWLDALRIYLKDNLTYIADKMNAAFPELNWQIP----QSTYLAWLDL  328 (390)
T ss_dssp             ------HHTTSCCCSCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCC----SBCSEEEEEC
T ss_pred             ------HhhhcccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecC----CccEEEEEEc
Confidence                  0100112246666666666666642 223677888899999999999998 5 7766543    2345667888


Q ss_pred             CCC-CCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          314 PSH-INSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       314 ~~~-~~~~~l~~~L~~~~~i~v~~g~~~~--~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +.. .+..++.+.|.+++||.+.+|..+.  .++++||++..  +++++++++++|+++++++
T Consensus       329 ~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~~~  389 (390)
T 1d2f_A          329 RPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC--PRSKLEKGVAGLINAIRAV  389 (390)
T ss_dssp             GGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhh
Confidence            643 5788899999855599999885432  35789998876  6899999999999988753

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.97  E-value=1e-30  Score=250.56  Aligned_cols=326  Identities=11%  Similarity=0.043  Sum_probs=233.9

Q ss_pred             cCChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhc------------CCCCceEEecCChhHHHHHHHhccCCC
Q 015729           18 VHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFK------------TTSGTPFLIPTTGTGAWESALTNTLSP   83 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g------------~~~~~~i~~~~g~t~a~~~~~~~~~~~   83 (401)
                      .+.++.+++++.+....  ...+.......++++.++++++            .+ ++++++++|+++|+..++.+++++
T Consensus        49 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~-~~~v~~~~g~~~al~~~~~~l~~~  127 (416)
T 1bw0_A           49 LLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIV-KDNVVLCSGGSHGILMAITAICDA  127 (416)
T ss_dssp             SCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCC-GGGEEEESHHHHHHHHHHHHHCCT
T ss_pred             CCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCC-cceEEEeCChHHHHHHHHHHhCCC
Confidence            56778888888764321  1122222345688888888887            33 345999999999999999988999


Q ss_pred             CCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHH
Q 015729           84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSK  158 (401)
Q Consensus        84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~  158 (401)
                      ||+|+++.++|+++.  ..++..|++++.++.+.+  +.+|++++++.+++    +++++++++|+||||.++|   +++
T Consensus       128 gd~vl~~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----~~~~v~i~~p~nptG~~~~~~~l~~  201 (416)
T 1bw0_A          128 GDYALVPQPGFPHYE--TVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDD----KTKLLIVTNPSNPCGSNFSRKHVED  201 (416)
T ss_dssp             TCEEEEEESCCTHHH--HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred             CCEEEEcCCCcHhHH--HHHHHcCcEEEEeecCcccCCCCCHHHHHHHhcc----CCeEEEEeCCCCCCCcccCHHHHHH
Confidence            999999999988754  467788999999987653  45899999999873    5689999999999999998   888


Q ss_pred             HHHHhhhcCCCcEEEEecccccCcc--------eeccC---cccceEEEecCCCcccCC-CcceEEEecHH--HHHHhcc
Q 015729          159 VRKLLDEYRHPALFLVDGVSSICAI--------DFRMD---EWGIDVALTGSQKALSLP-TGMGIVCASPK--ALEASKT  224 (401)
Q Consensus       159 i~~l~~~~~~~~~li~D~a~~~~~~--------~~~~~---~~~~di~~~s~~K~l~g~-~g~G~l~~~~~--~~~~~~~  224 (401)
                      |.++|++  +|++||+|++|+.+..        .....   ..+.++++.|.+|+++.+ .++|+++++++  ..+.+..
T Consensus       202 i~~~~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~  279 (416)
T 1bw0_A          202 IVRLAEE--LRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLE  279 (416)
T ss_dssp             HHHHHHH--HTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHH
T ss_pred             HHHHHHH--cCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHH
Confidence            9999999  9999999999986321        11111   223467889999997422 24799998764  3222211


Q ss_pred             CCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCcc
Q 015729          225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEW  303 (401)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~  303 (401)
                                  ....+..   ..++++...++++.++++.....++++..++++++++++.+.|+++ |+.+..+.   
T Consensus       280 ------------~~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---  341 (416)
T 1bw0_A          280 ------------GLKRVGM---LVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPR---  341 (416)
T ss_dssp             ------------HHHHHHH---HHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCC---
T ss_pred             ------------HHHHHhc---cccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC---
Confidence                        0011100   0223666666666666653224457788889999999999999887 77655432   


Q ss_pred             CCceeEEEEcCC-----CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          304 FSDTVTAVIVPS-----HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       304 ~~~~~~~~~~~~-----~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                       .+.++++.++.     ..+..++.+.|.+++||.+.+|.....++++||++.  .+++++++++++|++++++.
T Consensus       342 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~--~~~e~l~~~l~~l~~~l~~~  413 (416)
T 1bw0_A          342 -GAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTT--RPVEVYREAVERIKAFCQRH  413 (416)
T ss_dssp             -BTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             -eeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence             23466677752     246778888886444999998865444679999884  58999999999999998764

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.97  E-value=6e-31  Score=252.56  Aligned_cols=323  Identities=14%  Similarity=0.082  Sum_probs=231.9

Q ss_pred             cCChHHHHHHHccCcCC-----CCC--ccHHHHHHHHHHHHHHHhcCC-CC-ceEEecCChhHHHHHHHhccCCCCCeEE
Q 015729           18 VHIPDQVIRAMNRNNED-----YRS--PAVPALTKTLLEDIKKIFKTT-SG-TPFLIPTTGTGAWESALTNTLSPGDRII   88 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~~-----~~~--~~~~~~~~~l~~~la~~~g~~-~~-~~i~~~~g~t~a~~~~~~~~~~~gd~vl   88 (401)
                      .+.++.+++++.+....     .+.  ....+..+++.+.+.+.+|.+ .+ +++++++|+++|+..++.+++++||+|+
T Consensus        40 ~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl  119 (422)
T 3fvs_A           40 FPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVI  119 (422)
T ss_dssp             SCCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEE
T ss_pred             CCCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEE
Confidence            34677888887764322     111  122333444444444444443 22 4699999999999999999999999999


Q ss_pred             EEcCCcchHHHHHHHHHcCCcEEEEeCCC------------CCCCChHHHHHHHhccCCCCceEEEEEecCCCccccc--
Q 015729           89 SFLIGQFSLLWIDQQQRLNFNVDVVESDW------------GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN--  154 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~------------~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~--  154 (401)
                      ++.++|+++.  ..++..|++++.++.+.            ++.+|++++++++++    +++++++++++||||.+.  
T Consensus       120 ~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~----~~~~v~~~~p~nptG~~~~~  193 (422)
T 3fvs_A          120 IIEPFFDCYE--PMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS----RTKALVLNTPNNPLGKVFSR  193 (422)
T ss_dssp             EEESCCTTHH--HHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCT----TEEEEEEESSCTTTCCCCCH
T ss_pred             EcCCCchhhH--HHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCC----CceEEEECCCCCCCCcCCCH
Confidence            9999888754  56777899999999875            235799999998863    679999999999999999  


Q ss_pred             -chHHHHHHhhhcCCCcEEEEecccccCcc----eec---cC-cccceEEEecCCCccc-CCCcceEEEecHHHHHHhcc
Q 015729          155 -NLSKVRKLLDEYRHPALFLVDGVSSICAI----DFR---MD-EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKT  224 (401)
Q Consensus       155 -~l~~i~~l~~~~~~~~~li~D~a~~~~~~----~~~---~~-~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~  224 (401)
                       ++++|.++|++  +|+++|+|++|+.+..    +.+   .. ..+.++++.|.+|+++ ++.++|++++++++++.+..
T Consensus       194 ~~l~~i~~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~  271 (422)
T 3fvs_A          194 EELELVASLCQQ--HDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRT  271 (422)
T ss_dssp             HHHHHHHHHHHH--HTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--cCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEEEeCHHHHHHHHH
Confidence             58889999999  9999999999985321    111   11 2356789999999985 33457999999988776643


Q ss_pred             CCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHH------HHhcHHHHHHHHHHHHHHHHHHHHHcCCcccc
Q 015729          225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI------FEEGLENVIERHRRLGKATRLAVEAWGLKNCT  298 (401)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~------~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~  298 (401)
                      .                ...  ..++.+...++++.++++..      ....+++.++++.++++++.+.|++.|+.+..
T Consensus       272 ~----------------~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~  333 (422)
T 3fvs_A          272 V----------------HQN--SVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPII  333 (422)
T ss_dssp             H----------------HHT--TTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEB
T ss_pred             H----------------Hhh--ccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCeecC
Confidence            1                011  12345666566666666531      12236788899999999999999988887655


Q ss_pred             CCCccCCceeEEEEcCC---CCC----------HHHHHHHHHhhCCeEEccCCCC-------CCCcEEEEeecccCCHHH
Q 015729          299 QKEEWFSDTVTAVIVPS---HIN----------SSEIVRRAWQRYNLSLGLGLNK-------VAGKVFRIGHLGHLNELQ  358 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~~---~~~----------~~~l~~~L~~~~~i~v~~g~~~-------~~~~~~Ri~~~~~~~~~d  358 (401)
                      +.    .+.++++.++.   +.+          ..+++..|.+++||.+.+|..+       ...+++||++..  ++++
T Consensus       334 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~  407 (422)
T 3fvs_A          334 PQ----GSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK--DEAT  407 (422)
T ss_dssp             CS----BSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC--CHHH
T ss_pred             CC----eeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecC--CHHH
Confidence            42    34567777632   111          4578888776669999988543       235789998765  9999


Q ss_pred             HHHHHHHHHHHHHh
Q 015729          359 LLGCLAGVEMILKD  372 (401)
Q Consensus       359 i~~~~~~i~~~l~~  372 (401)
                      +++++++|++++++
T Consensus       408 i~~~l~~l~~~l~~  421 (422)
T 3fvs_A          408 LQAMDEKLRKWKVE  421 (422)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998865

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.97  E-value=1.7e-29  Score=238.50  Aligned_cols=332  Identities=11%  Similarity=0.047  Sum_probs=232.6

Q ss_pred             CcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc---CCCCCeEEEEcCC
Q 015729           17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT---LSPGDRIISFLIG   93 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~---~~~gd~vl~~~~~   93 (401)
                      .+++++.+++++.+....... .......++++.+++++|.+   .+++++|+++|+..++.++   +++||+|+++.++
T Consensus         8 ~~~~~~~v~~a~~~~~~~~~~-~~~~~~~~l~~~la~~~~~~---~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~   83 (375)
T 2fnu_A            8 EPCLDKEDKKAVLEVLNSKQL-TQGKRSLLFEEALCEFLGVK---HALVFNSATSALLTLYRNFSEFSADRNEIITTPIS   83 (375)
T ss_dssp             CCCCCHHHHHHHHHHHTSSCC-SSSHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSS
T ss_pred             CCCCCHHHHHHHHHHHHcCcc-cCChHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCc
Confidence            456778888888875543221 12456789999999999986   4999999999999999988   8999999999999


Q ss_pred             cchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEE
Q 015729           94 QFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFL  173 (401)
Q Consensus        94 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li  173 (401)
                      |++..  ..++..|++++.++.+.++.+|++++++++++    ++++++++++   +|.+.|+++|.++|++  +|+++|
T Consensus        84 ~~~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~v~~~~~---tG~~~~l~~i~~l~~~--~~~~li  152 (375)
T 2fnu_A           84 FVATA--NMLLESGYTPVFAGIKNDGNIDELALEKLINE----RTKAIVSVDY---AGKSVEVESVQKLCKK--HSLSFL  152 (375)
T ss_dssp             CTHHH--HHHHHTTCEEEECCBCTTSSBCGGGSGGGCCT----TEEEEEEECG---GGCCCCHHHHHHHHHH--HTCEEE
T ss_pred             cHhHH--HHHHHCCCEEEEeccCCCCCCCHHHHHhhcCc----CceEEEEeCC---cCCccCHHHHHHHHHH--cCCEEE
Confidence            88775  34566899999999987778899999988863    5688888765   9999999999999999  999999


Q ss_pred             EecccccCcceec--cCccc-ceEEEecCCCcccCCCcceEEEec--HHHHHHhccCCCCccccchHHHHHHhhcCCC-C
Q 015729          174 VDGVSSICAIDFR--MDEWG-IDVALTGSQKALSLPTGMGIVCAS--PKALEASKTAKSVRVFFDWKDYIKFYNLGTF-W  247 (401)
Q Consensus       174 ~D~a~~~~~~~~~--~~~~~-~di~~~s~~K~l~g~~g~G~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~  247 (401)
                      +|++|+.+..+..  ....+ +++.++|+||++ ++ |+|+++++  +++.+++......... +.  ....++.+.. +
T Consensus       153 ~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~~-~~-g~g~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~  227 (375)
T 2fnu_A          153 SDSSHALGSEYQNKKVGGFALASVFSFHAIKPI-TT-AEGGAVVTNDSELHEKMKLFRSHGML-KK--DFFEGEVKSIGH  227 (375)
T ss_dssp             EECTTCTTCEETTEETTSSSSEEEEECCTTSSS-CC-SSCEEEEESCHHHHHHHHHHTBTTEE-ES--SSSCEEESSCCC
T ss_pred             EECccccCCeECCeeccccCCeEEEeCCCCCCc-cc-cCceEEEeCCHHHHHHHHHHHhcCCc-cc--cccccccccccc
Confidence            9999998765422  22222 445556666988 45 78888873  6666655432211000 00  0000110100 0


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCC-CccCCceeEEEEcCC-CC-CHHHHH
Q 015729          248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQK-EEWFSDTVTAVIVPS-HI-NSSEIV  323 (401)
Q Consensus       248 ~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~~~~~~~~~~~-~~-~~~~l~  323 (401)
                      ....+.     +.+++......++++..++.+++++++.+.|+++ |+++..+. .....+.++++.++. +. +..++.
T Consensus       228 ~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  302 (375)
T 2fnu_A          228 NFRLNE-----IQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLIL  302 (375)
T ss_dssp             BCCCCH-----HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHH
T ss_pred             cCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccccchHHHHH
Confidence            111222     2223333334467888999999999999999987 77665432 111233455666643 23 577899


Q ss_pred             HHHHhhCCeEEccCCCCC---------------------CCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          324 RRAWQRYNLSLGLGLNKV---------------------AGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       324 ~~L~~~~~i~v~~g~~~~---------------------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      +.|.++ ||.++..+.+.                     ..+.+||++...++++|+++++++|++++++++
T Consensus       303 ~~L~~~-gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~  373 (375)
T 2fnu_A          303 ESLHKR-GILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESFK  373 (375)
T ss_dssp             HHHHHT-TEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHC-CCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            999765 99988433211                     015799998888999999999999999998765

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.7e-30  Score=247.52  Aligned_cols=318  Identities=12%  Similarity=0.075  Sum_probs=231.7

Q ss_pred             CChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           19 HIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      +.++.+.+++.+....  ...+.......++++.+++++    |.+ .++++++++|+++|+..++.+++++||+|+++.
T Consensus        70 ~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~  149 (447)
T 3b46_A           70 SPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFE  149 (447)
T ss_dssp             CCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHcCCCCEEEEeC
Confidence            3567777777664432  111211223456777777765    443 334699999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCCCC------------CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---h
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESDWG------------EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---L  156 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~------------~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l  156 (401)
                      +.|+++.  ..++..|++++.++.+.+            +.+|+++++++++    ++++++++++++||||.+++   +
T Consensus       150 p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~v~l~~p~nptG~~~~~~~l  223 (447)
T 3b46_A          150 PFFDQYI--PNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT----SKTKAVIINTPHNPIGKVFTREEL  223 (447)
T ss_dssp             SCCTTHH--HHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC----TTEEEEEEESSCTTTCCCCCHHHH
T ss_pred             CCchhHH--HHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhc----cCCeEEEEeCCCCCCCcccCHHHH
Confidence            9888754  456778999999987543            4689999999886    36799999999999999974   7


Q ss_pred             HHHHHHhhhcCCCcEEEEecccccCcc-----ee-cc--CcccceEEEecCCCccc-CCCcceEEEe-cHHHHHHhccCC
Q 015729          157 SKVRKLLDEYRHPALFLVDGVSSICAI-----DF-RM--DEWGIDVALTGSQKALS-LPTGMGIVCA-SPKALEASKTAK  226 (401)
Q Consensus       157 ~~i~~l~~~~~~~~~li~D~a~~~~~~-----~~-~~--~~~~~di~~~s~~K~l~-g~~g~G~l~~-~~~~~~~~~~~~  226 (401)
                      ++|.++|++  +|++||+|++|+.+..     ++ ..  ...+.++++.|.+|+++ ++.++|++++ ++++++.+... 
T Consensus       224 ~~i~~l~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~~l~~~l~~~-  300 (447)
T 3b46_A          224 TTLGNICVK--HNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKA-  300 (447)
T ss_dssp             HHHHHHHHH--TTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCHHHHHHHHHH-
T ss_pred             HHHHHHHHH--cCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCHHHHHHHHHH-
Confidence            889999999  9999999999985432     11 11  12468999999999985 2334899999 88887766431 


Q ss_pred             CCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCC
Q 015729          227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS  305 (401)
Q Consensus       227 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  305 (401)
                                  ...     ..++.+...++++.++++..... .+++.+++++++++++.+.|+++|+++..+    ..
T Consensus       301 ------------~~~-----~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~  359 (447)
T 3b46_A          301 ------------HTR-----ICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYTAP----EG  359 (447)
T ss_dssp             ------------HHH-----HTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTCCEECC----SB
T ss_pred             ------------Hhh-----ccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecCC----Ce
Confidence                        000     12235555566677777765323 377888999999999999999988877643    23


Q ss_pred             ceeEEEEcCCC---------------CCHHHHHHHHHhhCCeEEccCCCCC-------CCcEEEEeecccCCHHHHHHHH
Q 015729          306 DTVTAVIVPSH---------------INSSEIVRRAWQRYNLSLGLGLNKV-------AGKVFRIGHLGHLNELQLLGCL  363 (401)
Q Consensus       306 ~~~~~~~~~~~---------------~~~~~l~~~L~~~~~i~v~~g~~~~-------~~~~~Ri~~~~~~~~~di~~~~  363 (401)
                      +.++++.++..               .+..+++++|.++.||.+.+|....       .++++||++..  +++++++++
T Consensus       360 g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~--~~e~l~~~~  437 (447)
T 3b46_A          360 TYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK--DDAYLENAV  437 (447)
T ss_dssp             SSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCS--CHHHHHHHH
T ss_pred             eEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeC--CHHHHHHHH
Confidence            45777887531               2456888888766699999884321       15789998864  899999999


Q ss_pred             HHHHH
Q 015729          364 AGVEM  368 (401)
Q Consensus       364 ~~i~~  368 (401)
                      ++|++
T Consensus       438 ~~l~~  442 (447)
T 3b46_A          438 ERLKL  442 (447)
T ss_dssp             HHGGG
T ss_pred             HHHHH
Confidence            99976

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.97  E-value=1.7e-29  Score=247.54  Aligned_cols=357  Identities=11%  Similarity=0.063  Sum_probs=242.4

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCC---C--CCccHHHHHHHHHHHHHHHhcCCC-CceEEecCChhHHHHHHHhccCC
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNED---Y--RSPAVPALTKTLLEDIKKIFKTTS-GTPFLIPTTGTGAWESALTNTLS   82 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~---~--~~~~~~~~~~~l~~~la~~~g~~~-~~~i~~~~g~t~a~~~~~~~~~~   82 (401)
                      +.+.+.+++...+..+.+++......   .  .++....+..++.+.+++++|.+. ...+++++|||+|+..++.+...
T Consensus        97 ~f~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~  176 (511)
T 3vp6_A           97 RFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARY  176 (511)
T ss_dssp             TEESSSSCCCCHHHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHH
T ss_pred             CceEeecCCCcHHHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHH
Confidence            35556666655555444555542221   1  234455667788889999999974 35689999999999887755432


Q ss_pred             --------------CCCeEEEEcCCcchHHHHHHHHHcCC---cEEEEeCCCCCCCChHHHHHHHhccC--CCCceEEEE
Q 015729           83 --------------PGDRIISFLIGQFSLLWIDQQQRLNF---NVDVVESDWGEGAKLDVLASKLAADT--AHTIKAICI  143 (401)
Q Consensus        83 --------------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~le~~~~~~~--~~~~~~i~~  143 (401)
                                    +++.|+++...|++..  ..++..|+   +++.++.+.++.+|+++|+++++++.  +.+++++++
T Consensus       177 ~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~--~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~  254 (511)
T 3vp6_A          177 KYFPEVKTKGMAAVPKLVLFTSEQSHYSIK--KAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNA  254 (511)
T ss_dssp             HHCTHHHHHCGGGSCCEEEEEETTSCTHHH--HHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HhhhhhhhcCcccCCCeEEEECCCchHHHH--HHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEE
Confidence                          5678888988888764  56777887   99999999889999999999997631  123789999


Q ss_pred             EecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceec-----cC-cccceEEEecCCCcccCCCcceEEEecHH
Q 015729          144 VHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR-----MD-EWGIDVALTGSQKALSLPTGMGIVCASPK  217 (401)
Q Consensus       144 ~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~-----~~-~~~~di~~~s~~K~l~g~~g~G~l~~~~~  217 (401)
                      ++++|++|.+.|+++|.++|++  +|+|+|+|++|+.+....+     .. ..++|++++++||+++++.|+|+++++++
T Consensus       255 ~~~~~~~G~vd~l~~I~~ia~~--~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~  332 (511)
T 3vp6_A          255 TAGTTVYGAFDPIQEIADICEK--YNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEK  332 (511)
T ss_dssp             EBSCSSSCCBCCHHHHHHHHHH--HTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESST
T ss_pred             ecCCCCCcccccHHHHHHHHHH--cCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCH
Confidence            9999999999999999999999  9999999999998765321     11 13579999999999988999999988765


Q ss_pred             -HHHHhccCCCCccccchHHHHHHhhcCC-CCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CC
Q 015729          218 -ALEASKTAKSVRVFFDWKDYIKFYNLGT-FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GL  294 (401)
Q Consensus       218 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~  294 (401)
                       ...........+.+.........+..+. ....+.+ ..+.+++++++.+..+|+++..++..++++++++.|++. |+
T Consensus       333 ~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~-~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~  411 (511)
T 3vp6_A          333 GILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRH-VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEF  411 (511)
T ss_dssp             THHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTE
T ss_pred             HHHHHHhccCCccccCcccccccccCccCCCCCCCCc-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence             4444332221111100000000000000 0011111 234677888888888889999999999999999999987 88


Q ss_pred             ccccCCCccCCceeEEEEc-CCCCC---------------HHHHHHHHHhhCCeEEccCCCCCCCcEEEEee-cccCCHH
Q 015729          295 KNCTQKEEWFSDTVTAVIV-PSHIN---------------SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGH-LGHLNEL  357 (401)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~-~~~~~---------------~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~-~~~~~~~  357 (401)
                      ++..+.++ ..+ +++|.+ |.+.+               ..++.+.|.++..+.+.........+++|+++ ...++++
T Consensus       412 ~l~~~~~p-~~~-~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~  489 (511)
T 3vp6_A          412 EMVFNGEP-EHT-NVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQS  489 (511)
T ss_dssp             EESSSSCC-SSS-CEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHH
T ss_pred             EEEecCCC-CeE-EEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHH
Confidence            88763112 233 344443 33221               23688888887334443221111123699998 5678999


Q ss_pred             HHHHHHHHHHHHHHh
Q 015729          358 QLLGCLAGVEMILKD  372 (401)
Q Consensus       358 di~~~~~~i~~~l~~  372 (401)
                      ||+.++++|++.-+.
T Consensus       490 di~~ll~~i~~~~~~  504 (511)
T 3vp6_A          490 DIDFLIEEIERLGQD  504 (511)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999887654

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.97  E-value=1.2e-29  Score=241.40  Aligned_cols=318  Identities=13%  Similarity=0.045  Sum_probs=229.7

Q ss_pred             CcCChHHHHHHHccCcCCCCCc----cHHHHHHHHHHHHHHHhcCC---CCceEEecCChhHHHHHHHhccCCCC-----
Q 015729           17 PVHIPDQVIRAMNRNNEDYRSP----AVPALTKTLLEDIKKIFKTT---SGTPFLIPTTGTGAWESALTNTLSPG-----   84 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~~~----~~~~~~~~l~~~la~~~g~~---~~~~i~~~~g~t~a~~~~~~~~~~~g-----   84 (401)
                      +.+.++.+.+++.+.......+    ...+..+++.+.+.+.+|.+   +.+++++++|+++|+..++.+++++|     
T Consensus        41 ~~~~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~  120 (396)
T 3jtx_A           41 KHPTPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIK  120 (396)
T ss_dssp             CSCCCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCC
T ss_pred             CCCCCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCC
Confidence            4556788999988754322112    13444445555555555753   43159999999999999999989996     


Q ss_pred             CeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCC-CCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHH---HH
Q 015729           85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE-GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSK---VR  160 (401)
Q Consensus        85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~---i~  160 (401)
                      |+|+++.++|+++.  ..++..|++++.++.+.++ .+|++++++++++    +++++++++++||||.+++.++   |.
T Consensus       121 d~vl~~~p~~~~~~--~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~----~~~~v~l~~p~nptG~~~~~~~l~~i~  194 (396)
T 3jtx_A          121 PAIVSPNPFYQIYE--GATLLGGGEIHFANCPAPSFNPDWRSISEEVWK----RTKLVFVCSPNNPSGSVLDLDGWKEVF  194 (396)
T ss_dssp             CEEEEEESCCHHHH--HHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHH----TEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             CEEEEcCCCcHhHH--HHHHHcCCEEEEeecCCCCCccCHHHHHHhhcc----CcEEEEEECCCCCCCCcCCHHHHHHHH
Confidence            79999999877654  4677889999999985543 6799999999975    5699999999999999997655   88


Q ss_pred             HHhhhcCCCcEEEEecccccCcc----eecc--------CcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCC
Q 015729          161 KLLDEYRHPALFLVDGVSSICAI----DFRM--------DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKS  227 (401)
Q Consensus       161 ~l~~~~~~~~~li~D~a~~~~~~----~~~~--------~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~  227 (401)
                      ++|++  +|+++|+|++|+.+..    +...        ...+.++++.|.+|.++ ++.++|+++.++++.+.+...  
T Consensus       195 ~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~--  270 (396)
T 3jtx_A          195 DLQDK--YGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLY--  270 (396)
T ss_dssp             HHHHH--HCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHH--
T ss_pred             HHHHH--cCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHH--
Confidence            89999  9999999999986432    1111        02567899999999763 234579999999887766532  


Q ss_pred             CccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCce
Q 015729          228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT  307 (401)
Q Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  307 (401)
                                 ...     ..++++...++++.++++.  ...+++.++++.++.+.+.+.|.+. +.+..+    ..+.
T Consensus       271 -----------~~~-----~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~----~~~~  327 (396)
T 3jtx_A          271 -----------RTY-----HGSAMSIPVQRASIAAWDD--EQHVIDNRRLYQEKFERVIPILQQV-FDVKLP----DASF  327 (396)
T ss_dssp             -----------HHH-----HTCCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHTTT-SCCCCC----SSSS
T ss_pred             -----------Hhh-----cccCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhc-CCccCC----CeeE
Confidence                       111     1234666666666666653  2336778888888888888888775 333322    2456


Q ss_pred             eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC--------CCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV--------AGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       308 ~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~--------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      ++++.++. .+..++.+.|.+++||.+.+|..+.        ..+++||++..  +++++++++++|++++
T Consensus       328 ~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          328 YIWLKVPD-GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--DVATCVKAAEDIVSLY  395 (396)
T ss_dssp             EEEEECTT-SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--CHHHHHHHHHHHHHHC
T ss_pred             EEEEECCC-CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--CHHHHHHHHHHHHHHh
Confidence            78888864 5778899998766699999885432        35789998765  9999999999998764

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.97  E-value=2e-29  Score=236.72  Aligned_cols=309  Identities=11%  Similarity=0.093  Sum_probs=233.0

Q ss_pred             CcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcch
Q 015729           17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFS   96 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~   96 (401)
                      |.+.++.+++++.+.......+ ......++++.++++++.++. ++++++|+++|+..++.++    |+|+++.++|++
T Consensus        37 ~~~~~~~v~~a~~~~~~~~~~y-~~~~~~~l~~~la~~~~~~~~-~i~~~~g~t~al~~~~~~~----d~vi~~~~~~~~  110 (361)
T 3ftb_A           37 PLGIPKSFLNNIDEGIKNLGVY-PDVNYRRLNKSIENYLKLKDI-GIVLGNGASEIIELSISLF----EKILIIVPSYAE  110 (361)
T ss_dssp             TTCSCHHHHTTHHHHHHGGGSC-CCTTCHHHHHHHHHHHTCCSC-EEEEESSHHHHHHHHHTTC----SEEEEEESCCTH
T ss_pred             CCCCCHHHHHHHHHHHHHhcCC-CCccHHHHHHHHHHHhCCCcc-eEEEcCCHHHHHHHHHHHc----CcEEEecCChHH
Confidence            4556788888777643221111 123457999999999998654 5999999999999998776    899999998887


Q ss_pred             HHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEEE
Q 015729           97 LLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFL  173 (401)
Q Consensus        97 ~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li  173 (401)
                      ..  ..++..|++++.++.+.++.++++++++++++     ++++++++++||||.+.|   +++|.++|++  +|+++|
T Consensus       111 ~~--~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~-----~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~--~~~~li  181 (361)
T 3ftb_A          111 YE--INAKKHGVSVVFSYLDENMCIDYEDIISKIDD-----VDSVIIGNPNNPNGGLINKEKFIHVLKLAEE--KKKTII  181 (361)
T ss_dssp             HH--HHHHHTTCEEEEEECCTTSCCCHHHHHHHTTT-----CSEEEEETTBTTTTBCCCHHHHHHHHHHHHH--HTCEEE
T ss_pred             HH--HHHHHcCCeEEEeecCcccCCCHHHHHHhccC-----CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhh--cCCEEE
Confidence            64  55777899999999998878899999999874     589999999999999987   5567777889  999999


Q ss_pred             EecccccCcce-----ec-cCcccceEEEecCCCccc-CCCcceEEE-ecHHHHHHhccCCCCccccchHHHHHHhhcCC
Q 015729          174 VDGVSSICAID-----FR-MDEWGIDVALTGSQKALS-LPTGMGIVC-ASPKALEASKTAKSVRVFFDWKDYIKFYNLGT  245 (401)
Q Consensus       174 ~D~a~~~~~~~-----~~-~~~~~~di~~~s~~K~l~-g~~g~G~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  245 (401)
                      +|++|+.+...     .. ....+.++++.|.+|+++ ++.++|+++ .++++.+.+.....                  
T Consensus       182 ~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~------------------  243 (361)
T 3ftb_A          182 IDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQN------------------  243 (361)
T ss_dssp             EECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSC------------------
T ss_pred             EECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCC------------------
Confidence            99998754431     11 112345688899999985 334568988 78888777654311                  


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCc-cccCCCccCCceeEEEEcCCCCCHHHHH
Q 015729          246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLK-NCTQKEEWFSDTVTAVIVPSHINSSEIV  323 (401)
Q Consensus       246 ~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~  323 (401)
                        .++++...++++.++++.  ..++++.++++.++++++.+.|+++ ++. +..+     .+.++++.+++ .+..++.
T Consensus       244 --~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~l~  313 (361)
T 3ftb_A          244 --PWNINCFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNKIGFIKRVFSP-----HANFVLCRLEN-ISGEKLY  313 (361)
T ss_dssp             --TTCSCHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECC-----SSSEEEEEESS-SCHHHHH
T ss_pred             --CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCC-----CCeEEEEEcCC-CCHHHHH
Confidence              234667666667677663  3346788899999999999999987 666 5443     23467788865 5788999


Q ss_pred             HHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          324 RRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       324 ~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      +.|.++ ||.+.+|..+  ..++++|+++.   +++++++++++++.+.+.
T Consensus       314 ~~l~~~-gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~  360 (361)
T 3ftb_A          314 DSLLKE-DIVIRRCCNFIGLDDSFVRFAIK---DEKKNTKFLRALKGVENN  360 (361)
T ss_dssp             HHHHTT-TEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHC-CeEEeeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHhc
Confidence            999877 9999988543  33678999864   788899999999887654

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.97  E-value=2.1e-29  Score=241.47  Aligned_cols=328  Identities=10%  Similarity=0.022  Sum_probs=226.7

Q ss_pred             CCCcCChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHh----cCCCCceEEecCChhHHHHHHHhccCCCCCeEEE
Q 015729           15 PGPVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTTSGTPFLIPTTGTGAWESALTNTLSPGDRIIS   89 (401)
Q Consensus        15 ~~p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~   89 (401)
                      .++.++++.+.+++.+.... ...+.......++++.+++++    +.+...++++++|+++|+..++.+++++||+|++
T Consensus        52 ~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~  131 (418)
T 3rq1_A           52 EGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLT  131 (418)
T ss_dssp             TSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhcCCCCEEEE
Confidence            34788899999998774321 111222223457777777766    2222226999999999999999999999999999


Q ss_pred             EcCCcchHHHHHHHHHcCCcEEEEeCC-CCCCCChHHHHHHHhccCCCCce-EEEEEec-CCCcccccchHHH---HHHh
Q 015729           90 FLIGQFSLLWIDQQQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIK-AICIVHN-ETATGVTNNLSKV---RKLL  163 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~le~~~~~~~~~~~~-~i~~~~~-~n~tG~~~~l~~i---~~l~  163 (401)
                      +.|+|+++.  ..++..|++++.++++ .++.+|++++++.+++....+++ ++++++| +||||.+.+.+++   .++|
T Consensus       132 ~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~  209 (418)
T 3rq1_A          132 ADWYWGAYR--VICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFL  209 (418)
T ss_dssp             ESSCCTHHH--HHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHH
T ss_pred             CCCCchhHH--HHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Confidence            999887664  5678899999999984 44588999999999741001335 7888889 9999999986655   4555


Q ss_pred             h------hcCCCcEEEEecccccCcce------e--ccCcccc---eEEEecCCCccc-CCCcceEEEe---cHHHHHHh
Q 015729          164 D------EYRHPALFLVDGVSSICAID------F--RMDEWGI---DVALTGSQKALS-LPTGMGIVCA---SPKALEAS  222 (401)
Q Consensus       164 ~------~~~~~~~li~D~a~~~~~~~------~--~~~~~~~---di~~~s~~K~l~-g~~g~G~l~~---~~~~~~~~  222 (401)
                      +      +  +|+++|+|++|......      +  .......   .+++.|.+|+++ ++.++|++++   ++++.+.+
T Consensus       210 ~~~~~~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~  287 (418)
T 3rq1_A          210 KDLVAIGR--NNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEF  287 (418)
T ss_dssp             HHHHHTSS--CEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHH
T ss_pred             HHhhhccC--CCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHH
Confidence            5      6  99999999998643211      0  1111122   378889999984 2345799998   88887766


Q ss_pred             ccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHH-----HhcHHHHHHHHHHHHHHHHHHHHHcCCccc
Q 015729          223 KTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRRLGKATRLAVEAWGLKNC  297 (401)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~  297 (401)
                      ....            .....+.  ..+++...+.++.++++...     ....++.++++.++++.+.+.|+++|+++.
T Consensus       288 ~~~~------------~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~  353 (418)
T 3rq1_A          288 FEVN------------KSTSRAT--WSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPML  353 (418)
T ss_dssp             HHHH------------HHHHHHH--TSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHH------------HHHHhhc--cCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            5320            0011011  12355555555555553211     112345677888899999999998888776


Q ss_pred             cCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      .+.    .+.++++.++   +..++++.|.++ ||.+.+|     ++++||++. .++++++++++++|++++++++
T Consensus       354 ~~~----~~~~~~~~~~---~~~~~~~~l~~~-gi~v~~g-----~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~~  416 (418)
T 3rq1_A          354 PYR----GGFFITIPTD---SANAICEELKKE-HIYVIAL-----ANGIRIAAC-GIPKCQMTGLAEKIYNAMKSLG  416 (418)
T ss_dssp             CCC----SSSEEEEECT---THHHHHHHHHHT-TEECEEC-----SSEEEEEGG-GSCHHHHTTHHHHHHHHHHHTT
T ss_pred             CCC----ceEEEEcCCC---CHHHHHHHHHhC-CEEEecC-----CCCeEEEEe-cCCHHHHHHHHHHHHHHHHHHh
Confidence            542    3456666653   678898888655 9999876     468999855 5799999999999999998764

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.97  E-value=2.4e-29  Score=235.96  Aligned_cols=284  Identities=14%  Similarity=0.095  Sum_probs=216.0

Q ss_pred             HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCC-CeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCC
Q 015729           44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG-DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAK  122 (401)
Q Consensus        44 ~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~g-d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d  122 (401)
                      ..++++.+++++|.+++ ++++++|+++++..++.+++++| |+|+++.++|+++.  ..++..|++++.++.+.++.+|
T Consensus        60 ~~~lr~~la~~~~~~~~-~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~d  136 (356)
T 1fg7_A           60 PKAVIENYAQYAGVKPE-QVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS--VSAETIGVECRTVPTLDNWQLD  136 (356)
T ss_dssp             CHHHHHHHHHHHTSCGG-GEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHH--HHHHHHTCEEEECCCCTTSCCC
T ss_pred             HHHHHHHHHHHhCCChH-HEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHH--HHHHHcCCEEEEeeCCCCCCCC
Confidence            57899999999998754 49999999999999999988999 99999999888764  4567789999999988776789


Q ss_pred             hHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcc--e-ecc-CcccceEEEec
Q 015729          123 LDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI--D-FRM-DEWGIDVALTG  198 (401)
Q Consensus       123 ~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~--~-~~~-~~~~~di~~~s  198 (401)
                      +++++++++     +++++++++++||||.+.|.+++.++++...+|+++|+|++|+.+..  . .+. ...+.++++.|
T Consensus       137 ~~~l~~~i~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s  211 (356)
T 1fg7_A          137 LQGISDKLD-----GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRT  211 (356)
T ss_dssp             HHHHHTSCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEE
T ss_pred             HHHHHHHhc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEec
Confidence            999988775     46899999999999999998888888877228999999999985441  1 122 33457899999


Q ss_pred             CCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHH
Q 015729          199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE  276 (401)
Q Consensus       199 ~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~  276 (401)
                      .+|+++ .+|  +|++++++++.+.+....                 .   +++.+...+.++.++++......+++.++
T Consensus       212 ~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~-----------------~---~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  270 (356)
T 1fg7_A          212 LSKAFA-LAGLRCGFTLANEEVINLLMKVI-----------------A---PYPLSTPVADIAAQALSPQGIVAMRERVA  270 (356)
T ss_dssp             SSSTTC-CGGGCCEEEEECHHHHHHHHHHS-----------------C---SSCSCHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             chHhhc-CchhhhEEEEeCHHHHHHHHHhc-----------------C---CCCCCHHHHHHHHHHhcCccHHHHHHHHH
Confidence            999984 444  699999999877665321                 1   12455555555555554321112677888


Q ss_pred             HHHHHHHHHHHHHHHcC--CccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEcc-CCCCCCCcEEEEeeccc
Q 015729          277 RHRRLGKATRLAVEAWG--LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGL-GLNKVAGKVFRIGHLGH  353 (401)
Q Consensus       277 ~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~-g~~~~~~~~~Ri~~~~~  353 (401)
                      ++.++++++.+.|++++  ..+..     ..+.++++.++   +..++.+.|.++ ||.+++ |..+..++++||++.  
T Consensus       271 ~~~~~~~~l~~~L~~~~~~~~~~~-----~~~~~~~~~~~---~~~~l~~~L~~~-gI~v~~~g~~~~~~~~iRis~~--  339 (356)
T 1fg7_A          271 QIIAEREYLIAALKEIPCVEQVFD-----SETNYILARFK---ASSAVFKSLWDQ-GIILRDQNKQPSLSGCLRITVG--  339 (356)
T ss_dssp             HHHHHHHHHHHHHHHSTTEEEECC-----CSSSEEEEEET---THHHHHHHHHHT-TEECEECTTSTTCTTEEEEECC--
T ss_pred             HHHHHHHHHHHHHHhCCCceEECC-----CCCeEEEEECC---CHHHHHHHHHHC-CEEEEECCCCCCCCCeEEEEeC--
Confidence            89999999999999875  22222     12346778885   678899999654 999998 754434568999864  


Q ss_pred             CCHHHHHHHHHHHHH
Q 015729          354 LNELQLLGCLAGVEM  368 (401)
Q Consensus       354 ~~~~di~~~~~~i~~  368 (401)
                       +++|+++++++|++
T Consensus       340 -~~~e~~~~~~~l~~  353 (356)
T 1fg7_A          340 -TREESQRVIDALRA  353 (356)
T ss_dssp             -CHHHHHHHHHHHHT
T ss_pred             -CHHHHHHHHHHHHh
Confidence             68999999998875

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.97  E-value=7.6e-29  Score=238.13  Aligned_cols=304  Identities=16%  Similarity=0.108  Sum_probs=221.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCC--------CceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEE
Q 015729           40 VPALTKTLLEDIKKIFKTTS--------GTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVD  111 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~--------~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~  111 (401)
                      ..++.+++.+.+++.+|.+.        ++++++++|+++|+..++.+++++||+|++..|+|++..  ..++..|++++
T Consensus        80 ~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~  157 (425)
T 2r2n_A           80 IPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTL--QSLHPLGCNII  157 (425)
T ss_dssp             CHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHH--HHHGGGTCEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHH--HHHHHcCCEEE
Confidence            34455555566666668764        257999999999999999999999999999999887754  56788899999


Q ss_pred             EEeCCCCCCCChHHHHHHHhccC--------CCCceEEEE-EecCCCcccccchH---HHHHHhhhcCCCcEEEEecccc
Q 015729          112 VVESDWGEGAKLDVLASKLAADT--------AHTIKAICI-VHNETATGVTNNLS---KVRKLLDEYRHPALFLVDGVSS  179 (401)
Q Consensus       112 ~v~~~~~~~~d~~~le~~~~~~~--------~~~~~~i~~-~~~~n~tG~~~~l~---~i~~l~~~~~~~~~li~D~a~~  179 (401)
                      .++.+.+ .+|++++++++++..        ..+++++++ ++++||||.+++.+   +|.++|++  +|++||+|++|+
T Consensus       158 ~v~~~~~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~--~~~~li~De~~~  234 (425)
T 2r2n_A          158 NVASDES-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARK--YDFLIIEDDPYY  234 (425)
T ss_dssp             EECEETT-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHH--TTCEEEEECTTG
T ss_pred             EeCcCCC-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHH--cCCEEEEECCcc
Confidence            9998765 489999999997311        135788876 68899999999865   89999999  999999999987


Q ss_pred             cCcc----e---eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCc
Q 015729          180 ICAI----D---FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPS  252 (401)
Q Consensus       180 ~~~~----~---~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  252 (401)
                      ....    .   ...+..+.++++.|.+|+++++.++|++++++++.+.+....                ..  ..++++
T Consensus       235 ~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~~~----------------~~--~~~~~~  296 (425)
T 2r2n_A          235 FLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVILHI----------------QV--STLHPS  296 (425)
T ss_dssp             GGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHHHH----------------HT--TTCSSC
T ss_pred             cccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHHHH----------------HH--hcCCCC
Confidence            3221    1   122223567999999999953334799999998877665320                01  123466


Q ss_pred             HHHHHHHHHHHHHHHH----hcHHHHHHHHHHHHHHHHHHHHHc--CCc-cccCCCccCCceeEEEEcCCCCCHHH-HHH
Q 015729          253 IQLLYGLRAALDLIFE----EGLENVIERHRRLGKATRLAVEAW--GLK-NCTQKEEWFSDTVTAVIVPSHINSSE-IVR  324 (401)
Q Consensus       253 ~~~~~a~~~al~~~~~----~g~~~~~~~~~~~~~~l~~~L~~~--g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~  324 (401)
                      ...+.++.++++....    ..+++.+++++++++.+.+.|++.  |+. +..+    ..+.++++.+++..+..+ +.+
T Consensus       297 ~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p----~~g~~~~~~~~~~~~~~~~~~~  372 (425)
T 2r2n_A          297 TFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVP----AAGMFLWIKVKGINDVKELIEE  372 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCC----SBSSEEEEEETTCSCCHHHHHT
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCC----CceEEEEEEeCCCCCHHHHHHH
Confidence            6666666677765322    235677788889999999999884  653 3322    244678888876555556 567


Q ss_pred             HHHhhCCeEEccCCCCC-----CCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          325 RAWQRYNLSLGLGLNKV-----AGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       325 ~L~~~~~i~v~~g~~~~-----~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .|.++ ||.+.+|..+.     ..+++||++.. .+++++++++++|++++++
T Consensus       373 ~l~~~-gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~  423 (425)
T 2r2n_A          373 KAVKM-GVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKE  423 (425)
T ss_dssp             HHHHT-TEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHC-CcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence            77654 99999885432     24689998763 5999999999999998865

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.97  E-value=4.2e-29  Score=238.30  Aligned_cols=333  Identities=14%  Similarity=0.120  Sum_probs=240.0

Q ss_pred             cccccCCCcCChHHHHHHHccCcCCCC-----------C-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNEDYR-----------S-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL   77 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~-----------~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~   77 (401)
                      .+++.++..+.++.+++++.+......           + +...++.+++++.+++++|.+. . .+++++|++|+..++
T Consensus        25 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~-~-~i~~~sGt~a~~~a~  102 (405)
T 2vi8_A           25 KIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH-A-NVQPHSGAQANMAVY  102 (405)
T ss_dssp             SEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE-E-ECCCSSHHHHHHHHH
T ss_pred             ceeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCc-e-EEEecCcHHHHHHHH
Confidence            345556666669999999988653110           1 1223344457789999999874 2 455556699999999


Q ss_pred             hccCCCCCeEEEEcCCcchHHH-HHH--HHHcCCcEEEEeCC-CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc
Q 015729           78 TNTLSPGDRIISFLIGQFSLLW-IDQ--QQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        78 ~~~~~~gd~vl~~~~~~~~~~~-~~~--~~~~g~~~~~v~~~-~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~  153 (401)
                      .+++++||+|+++.++|.++.. ...  ....+.+++.++.+ .++.+|++++++++++   .++++++++ +++ .|..
T Consensus       103 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~~v~~~-~~~-~~~~  177 (405)
T 2vi8_A          103 FTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARL---HRPKLIVAA-AAA-YPRI  177 (405)
T ss_dssp             HHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH---HCCSEEEEC-CSS-CCSC
T ss_pred             HHhcCCCCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHh---cCCeEEEEe-CCC-CCcc
Confidence            8889999999999997765531 000  11123467777765 4567899999999975   145777764 333 3667


Q ss_pred             cchHHHHHHhhhcCCCcEEEEecccccCcceeccCcc---cceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCcc
Q 015729          154 NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW---GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV  230 (401)
Q Consensus       154 ~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~  230 (401)
                      .++++|.++|++  +|+++|+|++|+.+....+....   .+|++++|.||+++|+.| |++++++++.+.+.....   
T Consensus       178 ~~l~~i~~l~~~--~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~l~~~~~---  251 (405)
T 2vi8_A          178 IDFAKFREIADE--VGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKAIF---  251 (405)
T ss_dssp             CCHHHHHHHHHH--HTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEEECHHHHHHHHHHHT---
T ss_pred             CCHHHHHHHHHH--cCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC-eEEEEcHHHHHHHHhhhc---
Confidence            789999999999  99999999999865432222111   578999999999977888 999999888766543210   


Q ss_pred             ccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEE
Q 015729          231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA  310 (401)
Q Consensus       231 ~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~  310 (401)
                                    .+..++++...++++.++++.+...++++..+++.++++++.+.|+++|+++..+.   ..+.+++
T Consensus       252 --------------~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~  314 (405)
T 2vi8_A          252 --------------PGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGG---TDNHLLL  314 (405)
T ss_dssp             --------------TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSSEEE
T ss_pred             --------------ccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeEecCC---CCceEEE
Confidence                          01123466777778788888776556788999999999999999999888776532   1245777


Q ss_pred             EEcCC-CCCHHHHHHHHHhhCCeEEccCCC------CCCCcEEEEeecc----cCCHHHHHHHHHHHHHHHHhc
Q 015729          311 VIVPS-HINSSEIVRRAWQRYNLSLGLGLN------KVAGKVFRIGHLG----HLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       311 ~~~~~-~~~~~~l~~~L~~~~~i~v~~g~~------~~~~~~~Ri~~~~----~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +.++. +.+..++.+.|.++ ||.+.+|..      ...++++|+++..    .++++|+++++++|+++++++
T Consensus       315 ~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~  387 (405)
T 2vi8_A          315 VDLRPQQLTGKTAEKVLDEV-GITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV  387 (405)
T ss_dssp             EECGGGTCCHHHHHHHHHHH-TEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred             EEccCCCCCHHHHHHHHHHc-CceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence            88853 45778898888765 999998742      2234679998875    478999999999999998755

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.97  E-value=8.8e-30  Score=245.44  Aligned_cols=337  Identities=11%  Similarity=0.043  Sum_probs=234.6

Q ss_pred             CCCcccccCCC-cCChHHHHHHHccCcCCCC-------------CccHHHHHHHHHHHHHHHhc--------CCCCceEE
Q 015729            7 PGKNHLFVPGP-VHIPDQVIRAMNRNNEDYR-------------SPAVPALTKTLLEDIKKIFK--------TTSGTPFL   64 (401)
Q Consensus         7 ~~~~~~~~~~p-~~~~~~v~~a~~~~~~~~~-------------~~~~~~~~~~l~~~la~~~g--------~~~~~~i~   64 (401)
                      |.+.+.++-.. ....+.+.+++.+......             .+.......++++.++++++        .+. +.++
T Consensus        37 p~~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~-~~v~  115 (435)
T 3piu_A           37 TNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDP-NHLV  115 (435)
T ss_dssp             TTSBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCG-GGEE
T ss_pred             CCCeEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCH-HHEE
Confidence            33444444433 3346777788777543110             11112334688888888887        333 4599


Q ss_pred             ecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHH-HcCCcEEEEeCCCC--CCCChHHHHHHHhcc--CCCCce
Q 015729           65 IPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQ-RLNFNVDVVESDWG--EGAKLDVLASKLAAD--TAHTIK  139 (401)
Q Consensus        65 ~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~~--~~~d~~~le~~~~~~--~~~~~~  139 (401)
                      +++|+++|+..++.+++++||+|++..++|++..  ..+. ..|++++.++.+.+  ..+|++++++++++.  .+.+++
T Consensus       116 ~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~  193 (435)
T 3piu_A          116 LTAGATSANETFIFCLADPGEAVLIPTPYYPGFD--RDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVK  193 (435)
T ss_dssp             EEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHH--HHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             EcCChHHHHHHHHHHhcCCCCeEEECCCccccHH--HHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeE
Confidence            9999999999999999999999999999887764  2344 67999999998764  357999999998751  112679


Q ss_pred             EEEEEecCCCcccccch---HHHHHHhhhcCCCcEEEEecccccCcce----ecc----Cc---------ccceEEEecC
Q 015729          140 AICIVHNETATGVTNNL---SKVRKLLDEYRHPALFLVDGVSSICAID----FRM----DE---------WGIDVALTGS  199 (401)
Q Consensus       140 ~i~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~li~D~a~~~~~~~----~~~----~~---------~~~di~~~s~  199 (401)
                      +|++++|+||||.+++.   ++|.++|++  +|+++|+|++|+.+...    ...    .+         ...++++.|.
T Consensus       194 ~v~i~~p~nptG~~~~~~~l~~l~~~~~~--~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~  271 (435)
T 3piu_A          194 GVLVTNPSNPLGTTMTRNELYLLLSFVED--KGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSL  271 (435)
T ss_dssp             EEEEESSCTTTCCCCCHHHHHHHHHHHHH--HTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEES
T ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHH--cCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEee
Confidence            99999999999999875   678888999  99999999999853221    111    11         2345889999


Q ss_pred             CCccc-CCCcceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHH--HhcHHHHH
Q 015729          200 QKALS-LPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF--EEGLENVI  275 (401)
Q Consensus       200 ~K~l~-g~~g~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~--~~g~~~~~  275 (401)
                      +|+++ ++.++|+++++ +.+.+.+...                  +.  .++.+....+++.++++...  +..+++.+
T Consensus       272 sK~~g~~G~r~G~~~~~~~~~~~~~~~~------------------~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  331 (435)
T 3piu_A          272 SKDLGLPGFRVGAIYSNDDMVVAAATKM------------------SS--FGLVSSQTQHLLSAMLSDKKLTKNYIAENH  331 (435)
T ss_dssp             SSSSCCGGGCEEEEEESCHHHHHHHHHH------------------GG--GSCCCHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             ecccCCCceeEEEEEeCCHHHHHHHHHH------------------hh--cCCCCHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            99995 33457999984 5554444321                  00  11234444444444444221  22346678


Q ss_pred             HHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCC------CHHHHHHHHHhhCCeEEccCCC--CCCCcEEE
Q 015729          276 ERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI------NSSEIVRRAWQRYNLSLGLGLN--KVAGKVFR  347 (401)
Q Consensus       276 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~~~~i~v~~g~~--~~~~~~~R  347 (401)
                      +++.++++++.+.|++.|+++..+    ..+.++++.+++..      +..++.+.|.+++||.+.+|..  ...++++|
T Consensus       332 ~~~~~~~~~l~~~L~~~g~~~~~~----~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iR  407 (435)
T 3piu_A          332 KRLKQRQKKLVSGLQKSGISCLNG----NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFR  407 (435)
T ss_dssp             HHHHHHHHHHHHHHHTTTCEECCC----CSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCcccCC----CeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEE
Confidence            888899999999998888876653    23457888886432      3457888888777999998743  23467899


Q ss_pred             EeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          348 IGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       348 i~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      |++.. .+++++++++++|+++++++
T Consensus       408 i~~~~-~~~e~i~~~l~~l~~~l~~~  432 (435)
T 3piu_A          408 VCFAN-LPERTLDLAMQRLKAFVGEY  432 (435)
T ss_dssp             EECSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeC-CCHHHHHHHHHHHHHHHHHH
Confidence            98744 49999999999999998765

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.97  E-value=8.8e-30  Score=244.92  Aligned_cols=299  Identities=14%  Similarity=0.125  Sum_probs=219.0

Q ss_pred             HHHHHHHHHHHhc--------CCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC
Q 015729           44 TKTLLEDIKKIFK--------TTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES  115 (401)
Q Consensus        44 ~~~l~~~la~~~g--------~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~  115 (401)
                      ..++++.++++++        .++ +++++++|+++++..++.++.++||+|+++.++|+++. ...+...|++++.++.
T Consensus        85 ~~~lr~~la~~~~~~~g~~~~~~~-~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~-~~~~~~~g~~~~~v~~  162 (428)
T 1iay_A           85 LPEFRKAIAKFMEKTRGGRVRFDP-ERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFN-RDLRWRTGVQLIPIHC  162 (428)
T ss_dssp             CHHHHHHHHHHHHHHTTTCSCCCT-TSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHH-HHTTTTTCCEEEEECC
T ss_pred             cHHHHHHHHHHHHHhcCCCCCCCh-hhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchH-HHHHHhcCCEEEEeec
Confidence            5678888888886        433 45999999999999999998999999999999887754 2234467999999998


Q ss_pred             CC--CCCCChHHHHHHHhcc--CCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEEEEecccccCcce----
Q 015729          116 DW--GEGAKLDVLASKLAAD--TAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID----  184 (401)
Q Consensus       116 ~~--~~~~d~~~le~~~~~~--~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~~~~~----  184 (401)
                      +.  +..+|++++++++++.  ...+++++++++|+||||.+.|   +++|.++|++  +|+++|+|++|+.+...    
T Consensus       163 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~--~~~~li~Dea~~~~~~~~~~~  240 (428)
T 1iay_A          163 ESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQ--HNIHLVCDEIYAATVFDTPQF  240 (428)
T ss_dssp             CTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHT--TTCEEEEECTTGGGCCSSSCC
T ss_pred             CCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHH--CCeEEEEeccccccccCCCCc
Confidence            64  3367999999998741  1136799999999999999999   8889999999  99999999999853221    


Q ss_pred             ec---cCc------ccce--EEEecCCCcccCCCc--ceEEEe-cHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCC
Q 015729          185 FR---MDE------WGID--VALTGSQKALSLPTG--MGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT  250 (401)
Q Consensus       185 ~~---~~~------~~~d--i~~~s~~K~l~g~~g--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  250 (401)
                      .+   ...      ++.|  +++.|.||+++ .+|  +|++++ ++++.+.+...             .    .   .++
T Consensus       241 ~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g-~~Glr~G~~~~~~~~~~~~~~~~-------------~----~---~~~  299 (428)
T 1iay_A          241 VSIAEILDEQEMTYCNKDLVHIVYSLSKDMG-LPGFRVGIIYSFNDDVVNCARKM-------------S----S---FGL  299 (428)
T ss_dssp             CCHHHHHTSGGGTTSCTTSEEEEEESTTTSS-CGGGCEEEEEESCHHHHHHHHHH-------------H----T---TSC
T ss_pred             cCHHHhccccccccCCCCcEEEEecchhhcC-CCCceEEEEEeCCHHHHHHHHHH-------------H----h---ccc
Confidence            11   111      1145  88999999984 344  599998 67776655421             0    1   123


Q ss_pred             CcHHHHHHHHHHHHHHH--HhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCC------CHHHH
Q 015729          251 PSIQLLYGLRAALDLIF--EEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI------NSSEI  322 (401)
Q Consensus       251 ~~~~~~~a~~~al~~~~--~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l  322 (401)
                      .+...++++.++++...  +..+++.++++.++++++.+.|+++|+++..+    ..+.++++.+++..      +..++
T Consensus       300 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~l  375 (428)
T 1iay_A          300 VSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKN----NAGLFCWMDLRPLLRESTFDSEMSL  375 (428)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCC----SSSSEEEEECGGGCSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC----CeeEEEEEechhhcCCCchhHHHHH
Confidence            45555555555554321  22356788888999999999999888776543    23457788885421      24578


Q ss_pred             HHHHHhhCCeEEccCCCCC--CCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          323 VRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       323 ~~~L~~~~~i~v~~g~~~~--~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .+.|.+++||.+.++....  .++++||++. ..+++++++++++|++++++
T Consensus       376 ~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~  426 (428)
T 1iay_A          376 WRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             HHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHHhc
Confidence            8888876799999885432  2468999887 57999999999999999864

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.97  E-value=3.3e-29  Score=238.58  Aligned_cols=324  Identities=11%  Similarity=0.038  Sum_probs=224.1

Q ss_pred             CChHHHHHHHccCcCC-------CCC--ccHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHhccCCCC-CeE
Q 015729           19 HIPDQVIRAMNRNNED-------YRS--PAVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLSPG-DRI   87 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~-------~~~--~~~~~~~~~l~~~la~~~g~~-~~~~i~~~~g~t~a~~~~~~~~~~~g-d~v   87 (401)
                      +.++.+.+++.+....       .+.  ....++.+++.+.+.+.+|.+ .++++++++|+++|+..++.+++++| |+|
T Consensus        48 ~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~v  127 (398)
T 3ele_A           48 PAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEF  127 (398)
T ss_dssp             CCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEE
T ss_pred             CCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEE
Confidence            4567777777664321       111  122344444444444455542 34569999999999999999999999 999


Q ss_pred             EEEcCCcchHHHHHHHHHcCCcEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccch---HHHHHHh
Q 015729           88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLL  163 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l---~~i~~l~  163 (401)
                      ++..++|+++.  ..++..|++++.++.+. ++.+|++++++++++    +++++++++++||||.+++.   ++|.++|
T Consensus       128 l~~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~----~~~~v~~~~p~nptG~~~~~~~l~~l~~~~  201 (398)
T 3ele_A          128 ITIAPYFPEYK--VFVNAAGARLVEVPADTEHFQIDFDALEERINA----HTRGVIINSPNNPSGTVYSEETIKKLSDLL  201 (398)
T ss_dssp             EEESSCCTHHH--HHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCT----TEEEEEECSSCTTTCCCCCHHHHHHHHHHH
T ss_pred             EEeCCCchhhH--HHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCc----CCCEEEEcCCCCCCCCCCCHHHHHHHHHHH
Confidence            99999888754  56778899999999875 457899999999863    67999999999999999984   5556777


Q ss_pred             hhc----CCCcEEEEecccccCcc-----eeccCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccc
Q 015729          164 DEY----RHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFD  233 (401)
Q Consensus       164 ~~~----~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~  233 (401)
                      +++    ++|+++|+|++|+.+..     +......+.++++.|.+|+++ ++.++|+++++++..+...          
T Consensus       202 ~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~----------  271 (398)
T 3ele_A          202 EKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAE----------  271 (398)
T ss_dssp             HHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHH----------
T ss_pred             HhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHH----------
Confidence            652    27999999999985321     222233457899999999995 4456899999887432110          


Q ss_pred             hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEc
Q 015729          234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV  313 (401)
Q Consensus       234 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~  313 (401)
                      +........... ...+++.....++.+++   ....   .++++.++++++.+.|+++|+++..+    ..+.++++.+
T Consensus       272 ~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l---~~~~---~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~~~  340 (398)
T 3ele_A          272 LYAAVCGAGRAL-GYVCAPSLFQKMIVKCQ---GATG---DINAYKENRDLLYEGLTRIGYHCFKP----DGAFYMFVKA  340 (398)
T ss_dssp             HHHHHHHHHHHT-TCCCSCHHHHHHHTTCT---TCCC---CHHHHHHHHHHHHHHHHHHTCCEECC----SBSSEEEEEC
T ss_pred             HHHHHHHHhhhc-cccCCCHHHHHHHHHHh---cCHH---HHHHHHHHHHHHHHHHHHcCCeecCC----CeeEEEEEEc
Confidence            000001011000 02234443333322222   2221   46778888999999999888877654    2345678888


Q ss_pred             CCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          314 PSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       314 ~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      |.. +..++.+.|.++ ||.+.+|..+..++++||++.  .+++++++++++|+++++++
T Consensus       341 ~~~-~~~~~~~~l~~~-gi~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~  396 (398)
T 3ele_A          341 LED-DSNAFCEKAKEE-DVLIVAADGFGCPGWVRISYC--VDREMIKHSMPAFEKIYKKY  396 (398)
T ss_dssp             SSS-CHHHHHHHHHTT-TEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             CCC-CHHHHHHHHHHC-CEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence            643 788899988765 999999866555679999874  59999999999999998764

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.97  E-value=6.5e-30  Score=246.00  Aligned_cols=324  Identities=11%  Similarity=0.028  Sum_probs=234.9

Q ss_pred             hHHH--HHHHccCcCC--CCCccHHHHHHHHHHHHHHHh-----cCCCCce---EEecCChhHHHHHHHhccCCCCCeEE
Q 015729           21 PDQV--IRAMNRNNED--YRSPAVPALTKTLLEDIKKIF-----KTTSGTP---FLIPTTGTGAWESALTNTLSPGDRII   88 (401)
Q Consensus        21 ~~~v--~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~-----g~~~~~~---i~~~~g~t~a~~~~~~~~~~~gd~vl   88 (401)
                      ++.+  ++++.+....  ...+.......++++.+++++     +.++ ++   +++++|+++|+..++.+++++||+|+
T Consensus        63 ~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~-~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl  141 (430)
T 2x5f_A           63 KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSI-DNMSRPIVTNALTHGLSLVGDLFVNQDDTIL  141 (430)
T ss_dssp             ECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCG-GGBCCCEEESHHHHHHHHHHHHHCCTTCEEE
T ss_pred             chhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCC-CccceEEEcCCchHHHHHHHHHHhCCCCEEE
Confidence            4444  7777665422  122322234568888888888     6654 45   89999999999999999999999999


Q ss_pred             EEcCCcchHHHHHHHHH-cCCcEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHh
Q 015729           89 SFLIGQFSLLWIDQQQR-LNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLL  163 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~  163 (401)
                      ++.++|++..  ..++. .|++++.++.+. ++.+|++++++++++.. ++++++++++|+||||.+++   +++|.++|
T Consensus       142 ~~~p~y~~~~--~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~  218 (430)
T 2x5f_A          142 LPEHNWGNYK--LVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYN-KDKVIMILNYPNNPTGYTPTHKEVTTIVEAI  218 (430)
T ss_dssp             EESSCCTHHH--HHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCC-SSEEEEEECSSCTTTCCCCCHHHHHHHHHHH
T ss_pred             EcCCcCccHH--HHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcC-CCCEEEEEcCCCCCCCCcCCHHHHHHHHHHH
Confidence            9999888764  55677 899999999865 35789999999997532 36789999999999999998   66777777


Q ss_pred             hh---cCCCcEEEEecccccCcc------ee--ccCc-ccc---eEEEecCCCcccCCCc--ceEEEe---cHHHHHHhc
Q 015729          164 DE---YRHPALFLVDGVSSICAI------DF--RMDE-WGI---DVALTGSQKALSLPTG--MGIVCA---SPKALEASK  223 (401)
Q Consensus       164 ~~---~~~~~~li~D~a~~~~~~------~~--~~~~-~~~---di~~~s~~K~l~g~~g--~G~l~~---~~~~~~~~~  223 (401)
                      ++   +++|+++|+|++|+.+..      ++  +... .+.   ++++.|.||+++ .+|  +|++++   ++++.+.+.
T Consensus       219 ~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~~~~~~~~~~~~~l~  297 (430)
T 2x5f_A          219 KALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFF-AWGFRVGFMTFGTSDQTTKEVLE  297 (430)
T ss_dssp             HHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTT-CGGGCCEEEEEBCCCHHHHHHHH
T ss_pred             HhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCC-CCCCCeEEEEEecCCHHHHHHHH
Confidence            76   236899999999975422      11  2222 345   788999999984 344  699999   988877665


Q ss_pred             cCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHH-HHH-HhcHHHHHHHHHHHHHHHHHHHH----HcCCccc
Q 015729          224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALD-LIF-EEGLENVIERHRRLGKATRLAVE----AWGLKNC  297 (401)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~-~~~-~~g~~~~~~~~~~~~~~l~~~L~----~~g~~~~  297 (401)
                      ...            .....+  ..++++...++++.++++ ... ...+++.++++.++++++.+.|+    +.|+.+.
T Consensus       298 ~~~------------~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~  363 (430)
T 2x5f_A          298 AKV------------KGLIRS--NISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAY  363 (430)
T ss_dssp             HHH------------HHHHHT--TTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEEC
T ss_pred             HHH------------hhhhhc--ccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceee
Confidence            310            000000  123466666666667776 310 11245588888899999999998    4566554


Q ss_pred             cCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .+    ..+.++++.++ +.+..++.+.|.+++||.+.+|    ..+++||++.. .+++++++++++|+++++++
T Consensus       364 ~~----~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g----~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~  429 (430)
T 2x5f_A          364 DF----NSGYFMAIKVH-DVDPEALRKHLIDKYSIGVIAL----NATDIRIAFSC-VEKDDIPHVFDSIAKAIDDL  429 (430)
T ss_dssp             CC----CBSSEEEEEES-SSCHHHHHHHHHHHHCEECEEC----SSSEEEEEGGG-SCGGGHHHHHHHHHHHHHHH
T ss_pred             CC----CceEEEEeCCC-CCCHHHHHHHHHHhCCEEEecC----CCCeEEEEEec-CCHHHHHHHHHHHHHHHHhc
Confidence            43    24457888887 6688899999987349999987    35689998874 59999999999999998764

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.97  E-value=1.1e-29  Score=245.74  Aligned_cols=325  Identities=10%  Similarity=0.059  Sum_probs=229.3

Q ss_pred             cCChHHHHHHHccCcC-----C-CCCccHHHHHHHHHHHHHHHh----cCCCCceEEecCChhHHHHHHHhccCCCCCeE
Q 015729           18 VHIPDQVIRAMNRNNE-----D-YRSPAVPALTKTLLEDIKKIF----KTTSGTPFLIPTTGTGAWESALTNTLSPGDRI   87 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~-----~-~~~~~~~~~~~~l~~~la~~~----g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~v   87 (401)
                      .+.++.|++++.+...     . ...+.......++++.+++++    +.++ +.+++++|+++++..+ .+++++||+|
T Consensus        81 ~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~-~~i~~t~G~~~al~~~-~~l~~~gd~V  158 (449)
T 3qgu_A           81 EPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAA-DEIFISDGSKCDIARI-QMMFGSKPTV  158 (449)
T ss_dssp             CCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCG-GGEEEESCHHHHHHHH-HHHHCSSSCE
T ss_pred             CCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCH-HHEEEccCHHHHHHHH-HHHhCCCCEE
Confidence            4466777777666332     1 112333344678999999988    4444 4599999999999988 7888999999


Q ss_pred             EEEcCCcchHHHHHHHHHcCCc----------EEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc--
Q 015729           88 ISFLIGQFSLLWIDQQQRLNFN----------VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN--  155 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~g~~----------~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~--  155 (401)
                      +++.++|+++.  ..++..|.+          ++.++.+.++.++++. +    +.  ++++++++++++||||.+++  
T Consensus       159 l~~~p~~~~~~--~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~--~~~~~v~l~~p~NPtG~~~~~~  229 (449)
T 3qgu_A          159 AVQDPSYPVYV--DTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDL-S----KA--KRTDIIFFCSPNNPTGAAATRA  229 (449)
T ss_dssp             EEEESCCTHHH--HHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCG-G----GC--CCCSEEEEESSCTTTCCCCCHH
T ss_pred             EEcCCCChhHH--HHHHHcCCcccccccccceeEEEecccccCCcCCh-h----Hc--CCCCEEEEeCCCCCCCCcCCHH
Confidence            99999988765  456777888          9999987654343321 1    11  36799999999999999987  


Q ss_pred             -hHHHHHHhhhcCCCcEEEEecccccCcce----ecc---C-cccceEEEecCCCccc-CCCcceEEEecHHHHHHhccC
Q 015729          156 -LSKVRKLLDEYRHPALFLVDGVSSICAID----FRM---D-EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTA  225 (401)
Q Consensus       156 -l~~i~~l~~~~~~~~~li~D~a~~~~~~~----~~~---~-~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~  225 (401)
                       +++|.++|++  +|+++|+|++|+.+...    ..+   . ..+.++++.|.+|+++ ++.++|+++++++.++..   
T Consensus       230 ~l~~l~~l~~~--~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~---  304 (449)
T 3qgu_A          230 QLTELVNFARK--NGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYAN---  304 (449)
T ss_dssp             HHHHHHHHHHH--HTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTT---
T ss_pred             HHHHHHHHHHH--CCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHHHHhhh---
Confidence             6678888999  99999999999863321    111   1 1356899999999995 445689999988764320   


Q ss_pred             CCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCC
Q 015729          226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS  305 (401)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  305 (401)
                           ...+...........  .++++...+.++.++++......+++.++++.++++++.+.|+++|+++..+.    .
T Consensus       305 -----~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~  373 (449)
T 3qgu_A          305 -----GEPVHADWNRVMTTC--FNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMGFSVYGGD----D  373 (449)
T ss_dssp             -----SCBHHHHHHHHHHHS--CCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEESS----S
T ss_pred             -----hhhHHHHHHHHhhcc--cCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeCCC----C
Confidence                 001111111111111  22455655555555655422234678889999999999999999888776542    3


Q ss_pred             ceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          306 DTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       306 ~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~--~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      +.++++.++ +.+..++++.|.+++||.+.+|..  ...++++||++..  +++++++++++|++++++
T Consensus       374 ~~~~~~~~~-~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~  439 (449)
T 3qgu_A          374 APYIWVGFP-GKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFG--SRENILEAVRRFKEAYGK  439 (449)
T ss_dssp             SSEEEEECT-TSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHC-
T ss_pred             eeEEEEECC-CCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence            457888887 678889999888777999998843  2335789998654  999999999999998854

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.97  E-value=1.3e-28  Score=235.83  Aligned_cols=355  Identities=13%  Similarity=0.105  Sum_probs=244.1

Q ss_pred             cccccCCCcCChHHHHHHHccCcCCCC-----------C-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNEDYR-----------S-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL   77 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~-----------~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~   77 (401)
                      ...+.+++.+.++.+++++.+......           + .........+++.+++++|.+.. +++++ +||+|+..++
T Consensus        27 ~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~~-sGt~a~~~~~  104 (417)
T 3n0l_A           27 GLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFA-NVQPN-SGSQANQGVY  104 (417)
T ss_dssp             SEECCTTCCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE-ECCCS-SHHHHHHHHH
T ss_pred             CeeeecccCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCc-ceEec-cHHHHHHHHH
Confidence            345566777779999999988652221           0 11234455677899999998653 35554 5589999999


Q ss_pred             hccCCCCCeEEEEcCCcchHHH-HHHHHH--cCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccccc
Q 015729           78 TNTLSPGDRIISFLIGQFSLLW-IDQQQR--LNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN  154 (401)
Q Consensus        78 ~~~~~~gd~vl~~~~~~~~~~~-~~~~~~--~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~  154 (401)
                      .+++++||+|+++.++|+++.. ......  .+..++.++.+.++.+|++++++++++   +++++|++++++|  |...
T Consensus       105 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~~--G~~~  179 (417)
T 3n0l_A          105 AALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKK---EKPKLIVCGASAY--ARVI  179 (417)
T ss_dssp             HHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHH---HCCSEEEECCSSC--CSCC
T ss_pred             HHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHh---cCCeEEEECCccc--CccC
Confidence            9999999999999998876541 112222  345566677776677899999999974   2468888877664  8999


Q ss_pred             chHHHHHHhhhcCCCcEEEEecccccCcc-----eeccCcccceEEEecCCCcccCCCcceEEEec-HHHHHHhccCCCC
Q 015729          155 NLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCAS-PKALEASKTAKSV  228 (401)
Q Consensus       155 ~l~~i~~l~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~-~~~~~~~~~~~~~  228 (401)
                      |+++|.++|++  +|+++|+|++|+.+..     +....  +.|++++|.||++.|+.| |+++++ +++.+.+....  
T Consensus       180 ~l~~i~~l~~~--~~~~li~Dea~~~g~~~~~~~~~~~~--~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~~~~~~--  252 (417)
T 3n0l_A          180 DFAKFREIADE--IGAYLFADIAHIAGLVVAGEHPSPFP--YAHVVSSTTHKTLRGPRG-GIIMTNDEELAKKINSAI--  252 (417)
T ss_dssp             CHHHHHHHHHH--HTCEEEEECTTTHHHHHTTSSCCCTT--TCSEEEEESSTTTCSCSC-EEEEESCHHHHHHHHHHH--
T ss_pred             CHHHHHHHHHH--cCCEEEEECccchhhhhcccCCCccc--cceEEEeeCccccCCCCe-eEEEECCHHHHHHHhhhh--
Confidence            99999999999  9999999999875543     11222  479999999999976664 999998 67766554311  


Q ss_pred             ccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCcee
Q 015729          229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV  308 (401)
Q Consensus       229 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~  308 (401)
                                   ..+  ..++++...++++.+++......+++...++..++++++.+.|.+.|+++....   ....+
T Consensus       253 -------------~~~--~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~  314 (417)
T 3n0l_A          253 -------------FPG--IQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVSDG---TDNHL  314 (417)
T ss_dssp             -------------TTT--TCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSSE
T ss_pred             -------------CCc--ccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCceeccCC---CCceE
Confidence                         011  133466767777777777655455778889999999999999998887765521   12346


Q ss_pred             EEEEcC-CCCCHHHHHHHHHhhCCeEEccCCCC------CCCcEEEEeeccc----CCHHHHHHHHHHHHHHHHhcCCCC
Q 015729          309 TAVIVP-SHINSSEIVRRAWQRYNLSLGLGLNK------VAGKVFRIGHLGH----LNELQLLGCLAGVEMILKDVGYPV  377 (401)
Q Consensus       309 ~~~~~~-~~~~~~~l~~~L~~~~~i~v~~g~~~------~~~~~~Ri~~~~~----~~~~di~~~~~~i~~~l~~~~~~~  377 (401)
                      +++.++ .+.+..++.+.|.++ ||.+.++..+      .....+|+++...    .+++|+++++++|++++++... .
T Consensus       315 ~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~-~  392 (417)
T 3n0l_A          315 VLMSFLDREFSGKDADLALGNA-GITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDVNN-E  392 (417)
T ss_dssp             EEEECTTSSSCHHHHHHHHHHT-TEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTTTC-H
T ss_pred             EEEEcccCCCCHHHHHHHHHHc-CeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcccc-h
Confidence            667764 345778888888655 9998865422      2235699987542    5789999999999999986422 1


Q ss_pred             CcchHHHHHHHHHHccCCCCC
Q 015729          378 KLGSGVAAASAYLQNNIPMIP  398 (401)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~  398 (401)
                      +....+.....-+....|+-|
T Consensus       393 ~~~~~~~~~v~~~~~~~~~~~  413 (417)
T 3n0l_A          393 KLQENIKQELKKLASNFIIYE  413 (417)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCS
T ss_pred             hhHHHHHHHHHHHHhcCCCcc
Confidence            122235566667777777744

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.97  E-value=9.4e-29  Score=242.07  Aligned_cols=351  Identities=9%  Similarity=0.038  Sum_probs=241.9

Q ss_pred             CCcccccCCCcCChHHHHHHHccCcCC---C---CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-
Q 015729            8 GKNHLFVPGPVHIPDQVIRAMNRNNED---Y---RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-   80 (401)
Q Consensus         8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~---~---~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-   80 (401)
                      +..|+.....++.++++++++.....+   +   .++...++..++++.+++++|.++...+++++|||+|+..++.+. 
T Consensus       100 ~~~yl~~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar  179 (497)
T 2qma_A          100 HPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLAR  179 (497)
T ss_dssp             STTBCSSSCCCCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCeeEeCCCCCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHH
Confidence            356787777788899988777543211   1   123345566678888999999875456999999999999887652 


Q ss_pred             ---C---------CC------CC-eEEEEcCCcchHHHHHHHHHcCC---cEEEEeCCCCCCCChHHHHHHHhccCCC--
Q 015729           81 ---L---------SP------GD-RIISFLIGQFSLLWIDQQQRLNF---NVDVVESDWGEGAKLDVLASKLAADTAH--  136 (401)
Q Consensus        81 ---~---------~~------gd-~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~d~~~le~~~~~~~~~--  136 (401)
                         +         .+      |+ .|+++..+|++..  ..++..|.   +++.++.+.++.+|+++|+++++++...  
T Consensus       180 ~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~--~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~  257 (497)
T 2qma_A          180 DWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQ--KSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGL  257 (497)
T ss_dssp             HHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHH--HHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTC
T ss_pred             HHHHHhhcccchhhcccccccCCeEEEECCCchHHHH--HHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCC
Confidence               2         12      45 7888888888764  44555655   8999999888899999999999764211  


Q ss_pred             CceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceec----cCcc-cceEEEecCCCcccCCCcceE
Q 015729          137 TIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR----MDEW-GIDVALTGSQKALSLPTGMGI  211 (401)
Q Consensus       137 ~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~----~~~~-~~di~~~s~~K~l~g~~g~G~  211 (401)
                      ++.++++++++|++|.+.|+++|.++|++  +|+++|+|++|+.+..+.+    .... ++|++++|+||+++++.++|+
T Consensus       258 ~~~~vv~~~~~~~tG~~~~l~~I~~l~~~--~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~  335 (497)
T 2qma_A          258 IPFAIVGTAGTTDHGAIDDLDFIADMAVK--HDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGA  335 (497)
T ss_dssp             EEEEEEEEBSCTTTCCBCCHHHHHHHHHH--HTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSSCEE
T ss_pred             cceEEEEcCCCCCCCCCCCHHHHHHHHHH--cCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcceEE
Confidence            24488889999999999999999999999  9999999999988766544    2223 689999999999988889999


Q ss_pred             EEecHHH-HHHhccCCCCccccchHH--HHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 015729          212 VCASPKA-LEASKTAKSVRVFFDWKD--YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLA  288 (401)
Q Consensus       212 l~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~  288 (401)
                      ++++++. ++.+..   ...|.....  ........  ...+.. ....+++++++.+..+++++..++..++++++.+.
T Consensus       336 l~~~~~~~~~~~~~---~~~yl~~~~~~~~~~~~~~--~~~~r~-~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~  409 (497)
T 2qma_A          336 LLVNDKSNFKFLLH---HADYLNREHDELPNLVDKS--IATTKR-FDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADM  409 (497)
T ss_dssp             EEESCGGGGGGGCC-------------------------CCSCC-CTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCHHHHHHhcC---CchhcCCccccCCCccccC--CCCCCc-hhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            9987654 332221   111110000  00000000  000011 11235666777766667888999999999999999


Q ss_pred             HHHc-CCccccCCCccCCceeEEEEcCCC-CC----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEee-cccCCHHHHHH
Q 015729          289 VEAW-GLKNCTQKEEWFSDTVTAVIVPSH-IN----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGH-LGHLNELQLLG  361 (401)
Q Consensus       289 L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~-~~~~~~~di~~  361 (401)
                      |+++ ++++..+.   .. .+++|.++.. .+    ..++.+.|.++ |+.+.++.......++|+++ ...+|++|+++
T Consensus       410 L~~~~~~~~~~~~---~~-~~v~f~~~~~~~~~~~l~~~l~~~l~~~-G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~  484 (497)
T 2qma_A          410 IRTNDQFELLAEP---SL-STVLFRATHETADLDELNKALRLEALTR-GIAVLGETIVDGKTALKFTILNPCLTTSDFES  484 (497)
T ss_dssp             HHTCTTEEECSCC---SS-SEEEEEECCSSSCHHHHHHHHHHHHHHH-TSCBCEEEEETTEEEEEEECCCTTCCHHHHHH
T ss_pred             HhhCCCeEEEcCC---Cc-eEEEEEEcCCccCHHHHHHHHHHHHHhC-CCEEEEeeEECCEEEEEEEecCCCCCHHHHHH
Confidence            9987 87775431   23 3666776432 12    23566677766 77765432222235799987 66889999999


Q ss_pred             HHHHHHHHHHhc
Q 015729          362 CLAGVEMILKDV  373 (401)
Q Consensus       362 ~~~~i~~~l~~~  373 (401)
                      ++++|+++++++
T Consensus       485 ~~~~l~~~~~~~  496 (497)
T 2qma_A          485 LLSKINMLAVEL  496 (497)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999998764

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.97  E-value=6e-30  Score=247.74  Aligned_cols=329  Identities=12%  Similarity=0.087  Sum_probs=236.4

Q ss_pred             CCCCcccccCCCcCChHHHHHHHccC-----cC--C----CCCc--------cHHHHHHHHHHHHHHHhcCCCCceEEec
Q 015729            6 APGKNHLFVPGPVHIPDQVIRAMNRN-----NE--D----YRSP--------AVPALTKTLLEDIKKIFKTTSGTPFLIP   66 (401)
Q Consensus         6 ~~~~~~~~~~~p~~~~~~v~~a~~~~-----~~--~----~~~~--------~~~~~~~~l~~~la~~~g~~~~~~i~~~   66 (401)
                      ..+..|++.++.++.++.|++++...     ..  .    ....        ...+..+++++.+++++|.+..  ++++
T Consensus        78 ~~~~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~--~~~t  155 (456)
T 2z67_A           78 MDTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH--AIAT  155 (456)
T ss_dssp             TBGGGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE--EEEE
T ss_pred             ccccccccccccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCC--EEEe
Confidence            34568999998888888877775541     10  0    0011        1445678899999999999763  8999


Q ss_pred             CChh-HHHHHHHhccCC--CCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC---CCCCCCChHHHHHHH-hccCCCCce
Q 015729           67 TTGT-GAWESALTNTLS--PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES---DWGEGAKLDVLASKL-AADTAHTIK  139 (401)
Q Consensus        67 ~g~t-~a~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~~~~d~~~le~~~-~~~~~~~~~  139 (401)
                      +|+| .++..++.++..  +++.|+++.++|++..  ..++..|++++.++.   +.++.+|++++++++ +.....++.
T Consensus       156 ~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~--~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~  233 (456)
T 2z67_A          156 PISTGMSISLCLSAARKKYGSNVVIYPYASHKSPI--KAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRP  233 (456)
T ss_dssp             SSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH--HHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCE
T ss_pred             CcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHH--HHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeE
Confidence            9999 466545544322  6778888988877743  567778999999887   566789999999999 421002567


Q ss_pred             EEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcc---eeccCcc--cceEEEecCCCcccCCCcceEEEe
Q 015729          140 AICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI---DFRMDEW--GIDVALTGSQKALSLPTGMGIVCA  214 (401)
Q Consensus       140 ~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~---~~~~~~~--~~di~~~s~~K~l~g~~g~G~l~~  214 (401)
                      +++++.++|++|.+.|+++|.++|++  +|+++|+|+||+....   +.+....  ++|++++|+||++++|.|+|++++
T Consensus       234 ~vv~~~~nn~tG~i~~l~~I~~la~~--~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~  311 (456)
T 2z67_A          234 CVLSTLTFFPPRNSDDIVEIAKICEN--YDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYS  311 (456)
T ss_dssp             EEEEESSCCTTBCCCCHHHHHHHHHH--HTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEE
T ss_pred             EEEEeCCCCCCCCcCCHHHHHHHHHH--cCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEE
Confidence            78888899999999999999999999  9999999998875433   3332222  799999999999888899999999


Q ss_pred             -cHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-
Q 015729          215 -SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-  292 (401)
Q Consensus       215 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-  292 (401)
                       ++++.+.+.+...                |.     .+....+++.+++..+...++++..++..++++++.+.|+++ 
T Consensus       312 ~~~~~~~~l~~~~~----------------g~-----~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~  370 (456)
T 2z67_A          312 TDAEFIKEISLSYP----------------GR-----ASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLS  370 (456)
T ss_dssp             SCHHHHHHHHTTSC----------------SC-----BCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHhhcCcCCC----------------CC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             5677666643211                11     111224567778877777788999999999999999999987 


Q ss_pred             ---CCccccCCCccCCceeEEEEc--CCCCCHHHHHHHHHhhCCe---EEc------cCCC--CCCCcEEEEeecccCCH
Q 015729          293 ---GLKNCTQKEEWFSDTVTAVIV--PSHINSSEIVRRAWQRYNL---SLG------LGLN--KVAGKVFRIGHLGHLNE  356 (401)
Q Consensus       293 ---g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~~~~i---~v~------~g~~--~~~~~~~Ri~~~~~~~~  356 (401)
                         |+.+..+.      .+++|.+  ++  ...++.+.|.++ ||   .+.      .|..  ....+++|+++..++|+
T Consensus       371 ~~~g~~v~~~~------~~v~~~~~~~~--~~~~l~~~L~~~-gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~  441 (456)
T 2z67_A          371 KKTGGKFLDVE------SPIASCISVNS--DPVEIAAKLYNL-RVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRT  441 (456)
T ss_dssp             HHSSCCBCCCC------CSSEEEEECSS--CHHHHHHHHHHT-TEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCH
T ss_pred             cccCCEecCCC------CeEEEEEeccc--HHHHHHHHHHHc-CCCcceEEeecCccccccccccCcchhhhhhhcCCCH
Confidence               86665432      2334555  32  146888888876 64   342      1211  22346899998878899


Q ss_pred             HHHHHHHHHHHHHH
Q 015729          357 LQLLGCLAGVEMIL  370 (401)
Q Consensus       357 ~di~~~~~~i~~~l  370 (401)
                      +|+|+++++|++++
T Consensus       442 eeid~~l~~L~~~~  455 (456)
T 2z67_A          442 EDIVNSVSKLEKIL  455 (456)
T ss_dssp             HHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998754

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.97  E-value=5.1e-30  Score=245.08  Aligned_cols=330  Identities=14%  Similarity=0.077  Sum_probs=231.2

Q ss_pred             CCCcccccCCCc-CChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhc------CCCCceEEecCChhHHHHHHH
Q 015729            7 PGKNHLFVPGPV-HIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFK------TTSGTPFLIPTTGTGAWESAL   77 (401)
Q Consensus         7 ~~~~~~~~~~p~-~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g------~~~~~~i~~~~g~t~a~~~~~   77 (401)
                      ++...+..+-|. +.++.+++++.+....  ...+.......++++.++++++      .++.+++++++|+++|+..++
T Consensus        23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~  102 (410)
T 3e2y_A           23 PSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSI  102 (410)
T ss_dssp             TTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHH
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHH
Confidence            333444444343 5678888888775432  1112111223456666666655      333245999999999999999


Q ss_pred             hccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCC-----------CCCCChHHHHHHHhccCCCCceEEEEEec
Q 015729           78 TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-----------GEGAKLDVLASKLAADTAHTIKAICIVHN  146 (401)
Q Consensus        78 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-----------~~~~d~~~le~~~~~~~~~~~~~i~~~~~  146 (401)
                      .+++++||+|+++.++|+++.  ..++..|++++.++.+.           ++.+|+++++++++    +++++++++++
T Consensus       103 ~~~~~~gd~vl~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~----~~~~~v~~~~p  176 (410)
T 3e2y_A          103 QGLVDPGDEVIIMVPFYDCYE--PMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFS----SKTKAIILNTP  176 (410)
T ss_dssp             HHHCCTTCEEEEEESCCTTHH--HHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCC----TTEEEEEEESS
T ss_pred             HHhcCCCCEEEEeCCCchhhH--HHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcC----CCceEEEEeCC
Confidence            999999999999999887764  55677899999998762           34579999999886    36799999999


Q ss_pred             CCCccccc---chHHHHHHhhhcCCCcEEEEecccccCcc----eecc---C-cccceEEEecCCCccc-CCCcceEEEe
Q 015729          147 ETATGVTN---NLSKVRKLLDEYRHPALFLVDGVSSICAI----DFRM---D-EWGIDVALTGSQKALS-LPTGMGIVCA  214 (401)
Q Consensus       147 ~n~tG~~~---~l~~i~~l~~~~~~~~~li~D~a~~~~~~----~~~~---~-~~~~di~~~s~~K~l~-g~~g~G~l~~  214 (401)
                      +||||.++   ++++|.++|++  +|+++|+|++|+.+..    ....   . ..+.++++.|.+|+++ ++.++|++++
T Consensus       177 ~nptG~~~~~~~l~~l~~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~  254 (410)
T 3e2y_A          177 HNPLGKVYTRQELQVIADLCVK--HDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIG  254 (410)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHH--HTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEEC
T ss_pred             CCCCCcCcCHHHHHHHHHHHHH--cCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEE
Confidence            99999996   57889999999  9999999999975332    1111   1 2356688999999985 3445799999


Q ss_pred             cHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHH------HHhcHHHHHHHHHHHHHHHHHH
Q 015729          215 SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI------FEEGLENVIERHRRLGKATRLA  288 (401)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~------~~~g~~~~~~~~~~~~~~l~~~  288 (401)
                      ++++++.+...                ...  ..++.+...+.++.++++..      ....+++.+++++++++++.+.
T Consensus       255 ~~~~~~~~~~~----------------~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  316 (410)
T 3e2y_A          255 PAHLIKHLQTV----------------QQN--SFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRL  316 (410)
T ss_dssp             CHHHHHHHHHH----------------HHT--TTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH----------------HHh--hccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            99987766421                001  12345565555555665531      1223678888899999999999


Q ss_pred             HHHcCCccccCCCccCCceeEEEEcCC---CCC--------HHHHHHHHHhhCCeEEccCCCCC-------CCcEEEEee
Q 015729          289 VEAWGLKNCTQKEEWFSDTVTAVIVPS---HIN--------SSEIVRRAWQRYNLSLGLGLNKV-------AGKVFRIGH  350 (401)
Q Consensus       289 L~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~--------~~~l~~~L~~~~~i~v~~g~~~~-------~~~~~Ri~~  350 (401)
                      |+++|+.+..+.    .+.++++.++.   +.+        ..++...|.+++||.+.+|..+.       ..+++||++
T Consensus       317 L~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~  392 (410)
T 3e2y_A          317 LNSVGLKPIVPD----GGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCF  392 (410)
T ss_dssp             HHTTTCEEEBCS----BSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEEC
T ss_pred             HHHCCCeecCCC----ccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEE
Confidence            998888765542    34567776632   222        23777777655699999885432       247899986


Q ss_pred             cccCCHHHHHHHHHHHHH
Q 015729          351 LGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       351 ~~~~~~~di~~~~~~i~~  368 (401)
                      ..  +++++++++++|++
T Consensus       393 ~~--~~e~l~~~l~~l~~  408 (410)
T 3e2y_A          393 IK--KDSTLDAAEEIFRA  408 (410)
T ss_dssp             CC--CHHHHHHHHHHHHT
T ss_pred             cC--CHHHHHHHHHHHHh
Confidence            65  99999999999865

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.97  E-value=2.7e-29  Score=236.29  Aligned_cols=312  Identities=12%  Similarity=0.062  Sum_probs=227.1

Q ss_pred             CcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcch
Q 015729           17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFS   96 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~   96 (401)
                      |...++.+++++.+.......+.. ....++++.+++++|.++. .+++++|+++|+..++.++  +||+|++..++|++
T Consensus        35 ~~~~~~~v~~a~~~~~~~~~~y~~-~~~~~l~~~la~~~~~~~~-~v~~~~g~~~al~~~~~~~--~gd~vl~~~p~y~~  110 (364)
T 1lc5_A           35 PLGMPVSVKRALIDNLDCIERYPD-ADYFHLHQALARHHQVPAS-WILAGNGETESIFTVASGL--KPRRAMIVTPGFAE  110 (364)
T ss_dssp             TTCCCHHHHHHHHHTGGGGGSCCC-TTCHHHHHHHHHHHTSCGG-GEEEESSHHHHHHHHHHHH--CCSEEEEEESCCTH
T ss_pred             CCCCCHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHCcCHH-HEEECCCHHHHHHHHHHHc--CCCeEEEeCCCcHH
Confidence            344678888888875432111111 2467999999999988653 4999999999999998877  67999999998887


Q ss_pred             HHHHHHHHHcCCcEEEEeCCCCCCCC-hHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEE
Q 015729           97 LLWIDQQQRLNFNVDVVESDWGEGAK-LDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALF  172 (401)
Q Consensus        97 ~~~~~~~~~~g~~~~~v~~~~~~~~d-~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~l  172 (401)
                      ..  ..++..|++++.++.+.+..++ ++++.+.+.    ++++++++++|+||||.++|   +++|.++|++  +|+++
T Consensus       111 ~~--~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~--~~~~l  182 (364)
T 1lc5_A          111 YG--RALAQSGCEIRRWSLREADGWQLTDAILEALT----PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKS--LNINL  182 (364)
T ss_dssp             HH--HHHHHTTCEEEEEECCGGGTTCCCTTHHHHCC----TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHH--HTCEE
T ss_pred             HH--HHHHHcCCeEEEEeCCcccccchhHHHHHhcc----CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhh--cCcEE
Confidence            64  4567789999999987533344 354555443    36789999999999999998   8889999999  99999


Q ss_pred             EEecccccCcc----eecc-CcccceEEEecCCCccc-CCCcceEEE-ecHHHHHHhccCCCCccccchHHHHHHhhcCC
Q 015729          173 LVDGVSSICAI----DFRM-DEWGIDVALTGSQKALS-LPTGMGIVC-ASPKALEASKTAKSVRVFFDWKDYIKFYNLGT  245 (401)
Q Consensus       173 i~D~a~~~~~~----~~~~-~~~~~di~~~s~~K~l~-g~~g~G~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  245 (401)
                      |+|++|+.+..    ..+. ...+.++++.|.||+++ ++.++|+++ .++++.+.+.....                  
T Consensus       183 i~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~------------------  244 (364)
T 1lc5_A          183 ILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQM------------------  244 (364)
T ss_dssp             EEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSC------------------
T ss_pred             EEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCC------------------
Confidence            99999985432    1222 33567899999999985 233469999 89988776653210                  


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHHHHH
Q 015729          246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVR  324 (401)
Q Consensus       246 ~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  324 (401)
                        .++.+...++++.++++.  ...+++.++++.++++++.+.|+++ |+.+..+     .+.++++.+++  +..++.+
T Consensus       245 --~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-----~g~~~~~~~~~--~~~~l~~  313 (364)
T 1lc5_A          245 --PWSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLTVYPG-----RANYLLLRCER--EDIDLQR  313 (364)
T ss_dssp             --TTCSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCC-----SSSEEEEEESC--TTCCHHH
T ss_pred             --CCCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCC-----CCeEEEEECCC--cHHHHHH
Confidence              224666655666666654  2346778888899999999999887 7765432     22456778764  3457888


Q ss_pred             HHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          325 RAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       325 ~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .|.++ ||.+.++..+  ..++++||++.   +++|+++++++|+++++++
T Consensus       314 ~l~~~-gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~~  360 (364)
T 1lc5_A          314 RLLTQ-RILIRSCANYPGLDSRYYRVAIR---SAAQNERLLAALRNVLTGI  360 (364)
T ss_dssp             HHHTT-TEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHC---
T ss_pred             HHHHC-CcEEeeCcccCCCCCCEEEEEeC---CHHHHHHHHHHHHHHhhcc
Confidence            88876 9999988543  23578999853   6889999999999887654

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.97  E-value=3.6e-29  Score=233.76  Aligned_cols=325  Identities=13%  Similarity=0.087  Sum_probs=222.0

Q ss_pred             cccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        12 ~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      +.......+++.+++++.+.......+.......++++.+++++|.+.   +++++||++|+..++.+++++||+|+++.
T Consensus         8 ~~~~~~~~p~~~~~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~---~~~~~~gt~a~~~~~~~~~~~gd~Vl~~~   84 (347)
T 1jg8_A            8 LRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEA---ALFVPSGTMGNQVSIMAHTQRGDEVILEA   84 (347)
T ss_dssp             CSCGGGCCCCHHHHHHHHTCCCCCGGGTCCHHHHHHHHHHHHHHTCSE---EEEESCHHHHHHHHHHHHCCTTCEEEEET
T ss_pred             eccccCCCCCHHHHHHHhcCCCCCcccCCChHHHHHHHHHHHHhCCce---EEEecCcHHHHHHHHHHhcCCCCEEEEcC
Confidence            333333446678999987643222123334567899999999999753   78888999999988888899999999999


Q ss_pred             CCcchHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccC--CCCceEEEEEecCCCc-ccccch---HHHHHHhh
Q 015729           92 IGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT--AHTIKAICIVHNETAT-GVTNNL---SKVRKLLD  164 (401)
Q Consensus        92 ~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~--~~~~~~i~~~~~~n~t-G~~~~l---~~i~~l~~  164 (401)
                      ++|++.. ....++..|++++.+ .+.++.+|++++++++++..  .++++++++++++||| |.+.|.   ++|.++|+
T Consensus        85 ~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~  163 (347)
T 1jg8_A           85 DSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAK  163 (347)
T ss_dssp             TCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHH
T ss_pred             cchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHH
Confidence            9876543 123567789999988 55566689999999986421  0257999999999999 999874   67889999


Q ss_pred             hcCCCcEEEEecccccCcc---eeccC--cccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHH
Q 015729          165 EYRHPALFLVDGVSSICAI---DFRMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIK  239 (401)
Q Consensus       165 ~~~~~~~li~D~a~~~~~~---~~~~~--~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (401)
                      +  +|+++|+|++|.++..   ..+..  ..+.|.+++|.||+++++.| ++++.++++++++...+            .
T Consensus       164 ~--~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G-~~~~~~~~~~~~~~~~~------------~  228 (347)
T 1jg8_A          164 E--HGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVG-SVVVGDRDFIERARKAR------------K  228 (347)
T ss_dssp             H--HTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHH------------H
T ss_pred             H--CCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCCce-EEEEcCHHHHHHHHHHH------------H
Confidence            9  9999999998754321   11111  12578888899999965543 46777887766553210            0


Q ss_pred             HhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC-CCC
Q 015729          240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS-HIN  318 (401)
Q Consensus       240 ~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~  318 (401)
                      .+ .+.   ...+....++...+++.    ..+. .++..++++++.+.|+++|+++.... . .. .++++.++. +.+
T Consensus       229 ~~-~~~---~~~~~~~~~~~~~~l~~----~~~~-~~~~~~~~~~l~~~L~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~  296 (347)
T 1jg8_A          229 ML-GGG---MRQAGVLAAAGIIALTK----MVDR-LKEDHENARFLALKLKEIGYSVNPED-V-KT-NMVILRTDNLKVN  296 (347)
T ss_dssp             HH-TCC---CSSTHHHHHHHHHHHHH----SSTT-HHHHHHHHHHHHHHHHHHTCBCCGGG-C-CS-SEEEEECTTSSSC
T ss_pred             Hc-CCc---hhHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHhcCceeccCC-C-cc-eEEEEEcccccCC
Confidence            11 111   01222222222233332    1122 23344567888888887776643211 1 23 467788864 567


Q ss_pred             HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          319 SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      ..++.+.|.++ ||.++++.    .+++|+++...++++|+++++++|++++++
T Consensus       297 ~~~~~~~l~~~-gi~v~~~~----~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~  345 (347)
T 1jg8_A          297 AHGFIEALRNS-GVLANAVS----DTEIRLVTHKDVSRNDIEEALNIFEKLFRK  345 (347)
T ss_dssp             HHHHHHHHHHH-TEECEEEE----TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC-CCEEecCC----CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence            88999999866 99988652    458999887788999999999999998865

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.97  E-value=1.4e-29  Score=240.61  Aligned_cols=337  Identities=11%  Similarity=0.063  Sum_probs=233.7

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCCCeE
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRI   87 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~v   87 (401)
                      +...+..++..+++++++++.+...............++++.+++++|.+   .+++++|||+|+..++.++ +++||+|
T Consensus        23 ~~~~l~~~~p~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~---~~i~~~~gt~al~~~l~~~~~~~gd~v   99 (391)
T 3dr4_A           23 DLPRISVAAPRLDGNERDYVLECMDTTWISSVGRFIVEFEKAFADYCGVK---HAIACNNGTTALHLALVAMGIGPGDEV   99 (391)
T ss_dssp             -----CCCCCCCCSSHHHHHHHHHHHTCCSSCSHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHHTCCTTCEE
T ss_pred             CCceeccCCCCCCHHHHHHHHHHHHcCCccCCChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHcCCCCcCEE
Confidence            34555666667778888888774433222224577889999999999987   3888999999999999888 8999999


Q ss_pred             EEEcCCcchHHHHHHHHHcCCcEEEEeCC-CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhc
Q 015729           88 ISFLIGQFSLLWIDQQQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY  166 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~  166 (401)
                      +++.++|++..  ..++..|++++.++.+ .++.+|++++++++++    ++++++   ++||||...|+++|.++|++ 
T Consensus       100 l~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~v~---~~n~tG~~~~~~~i~~l~~~-  169 (391)
T 3dr4_A          100 IVPSLTYIASA--NSVTYCGATPVLVDNDPRTFNLDAAKLEALITP----RTKAIM---PVHLYGQICDMDPILEVARR-  169 (391)
T ss_dssp             EEESSSCTHHH--HHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCT----TEEEEC---CBCGGGCCCCHHHHHHHHHH-
T ss_pred             EECCCchHHHH--HHHHHCCCEEEEEecCccccCcCHHHHHHhcCC----CceEEE---EECCCCChhhHHHHHHHHHH-
Confidence            99999988875  4567789999999988 4567899999998863    567776   45799999999999999999 


Q ss_pred             CCCcEEEEecccccCcceecc--Ccc-cceEEEecCCCcccCCCcceEEEecH-HHHHHhccCCCCccccchHHHHHHhh
Q 015729          167 RHPALFLVDGVSSICAIDFRM--DEW-GIDVALTGSQKALSLPTGMGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYN  242 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~~~~~--~~~-~~di~~~s~~K~l~g~~g~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (401)
                       +|+++|+|++|+.|....+.  ... .+++..+|.+|+++++. .|+++.++ ++.+.+............ .+ ....
T Consensus       170 -~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~K~l~~g~-gg~~~~~~~~~~~~~~~~~~~g~~~~~-~~-~~~~  245 (391)
T 3dr4_A          170 -HNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITTGE-GGMITTNDDDLAAKMRLLRGQGMDPNR-RY-WFPI  245 (391)
T ss_dssp             -TTCEEEEECTTCTTCEETTEETTSSSSEEEEECBTTSSSCCBS-CEEEEESCHHHHHHHHHHHBTTCCTTS-TT-CCSS
T ss_pred             -cCCEEEEECcccccceECCeeecccCCEEEEECCCCCcCCcCC-eEEEEECCHHHHHHHHHHHhcCCCCCC-cc-cccc
Confidence             99999999999987653321  111 24444555889997644 47777664 454444321110000000 00 0000


Q ss_pred             cCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCccCCceeEEEEcCC--CC
Q 015729          243 LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQ---KEEWFSDTVTAVIVPS--HI  317 (401)
Q Consensus       243 ~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~---~~~~~~~~~~~~~~~~--~~  317 (401)
                      .|.  ....     ..+.+++......++++..++.+++.+++.+.|.++|+.+...   ......+.++++.+++  +.
T Consensus       246 ~g~--~~~~-----~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  318 (391)
T 3dr4_A          246 VGF--NYRM-----TNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGLST  318 (391)
T ss_dssp             CCC--BCBC-----CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECSSCSS
T ss_pred             ccc--ccCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCcCCCCCCcceeEEEEEEECCccch
Confidence            010  1112     2344455554555678888999999999999998887776543   2222334456777765  67


Q ss_pred             CHHHHHHHHHhhCCeEEccCCCCC--------------------CCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          318 NSSEIVRRAWQRYNLSLGLGLNKV--------------------AGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       318 ~~~~l~~~L~~~~~i~v~~g~~~~--------------------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      +..++.+.|.++ ||.+++++.+.                    ....+|++++..+|++|+++++++|++++
T Consensus       319 ~~~~l~~~L~~~-GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l  390 (391)
T 3dr4_A          319 TRDQVIKDLDAL-GIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL  390 (391)
T ss_dssp             CHHHHHHHHHHT-TCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHC-CCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence            788999999876 99998775210                    12469999999999999999999998653

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.97  E-value=1.8e-29  Score=236.56  Aligned_cols=327  Identities=11%  Similarity=0.051  Sum_probs=230.2

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCC-CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeE
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRI   87 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~v   87 (401)
                      -.++....+.+.++.+++++.+....+ ..+...+...++++.+++++| + +..+++++|||+|+..++.+++++||+|
T Consensus         9 ~id~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~-~~~v~~~~~gt~a~~~al~~~~~~gd~v   86 (356)
T 1v72_A            9 ALGFSSDNIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFE-R-DVEVFLVPTGTAANALCLSAMTPPWGNI   86 (356)
T ss_dssp             CCBCSCGGGCCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHT-S-CCEEEEESCHHHHHHHHHHTSCCTTEEE
T ss_pred             eEeeccCCccCCCHHHHHHHHhhccCcccccccchHHHHHHHHHHHHhC-C-CCcEEEeCCccHHHHHHHHHhcCCCCEE
Confidence            334444456677899999998865332 233345678899999999999 3 3348999999999999999988999999


Q ss_pred             EEEcCCcchHHHHHHHHHc--CCcEEEEeCCCCCCCChHHHHH-HHhcc---CCCCceEEEEEecCCCccccc---chHH
Q 015729           88 ISFLIGQFSLLWIDQQQRL--NFNVDVVESDWGEGAKLDVLAS-KLAAD---TAHTIKAICIVHNETATGVTN---NLSK  158 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~--g~~~~~v~~~~~~~~d~~~le~-~~~~~---~~~~~~~i~~~~~~n~tG~~~---~l~~  158 (401)
                      +++.++|++......+...  |++++.++.+ ++.+|++++++ ++++.   ...++++|++++++| ||.++   ++++
T Consensus        87 i~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~  164 (356)
T 1v72_A           87 YCHPASHINNDECGAPEFFSNGAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEA  164 (356)
T ss_dssp             EECTTSHHHHSSTTHHHHHTTSCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHH
T ss_pred             EEcCccchhhhhchHHHHHhCCcEEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHH
Confidence            9998877665311114445  8999988875 46789999999 88641   112579999999876 99955   5788


Q ss_pred             HHHHhhhcCCCcEEEEecccccCcc---eeccCc----ccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccc
Q 015729          159 VRKLLDEYRHPALFLVDGVSSICAI---DFRMDE----WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF  231 (401)
Q Consensus       159 i~~l~~~~~~~~~li~D~a~~~~~~---~~~~~~----~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~  231 (401)
                      |.++|++  +|+++|+|++|..+..   ......    .+.|++++|.||+ +++.|+|+++.++++.+++...      
T Consensus       165 i~~~~~~--~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~~~~~~~~~~~~~~------  235 (356)
T 1v72_A          165 IGDVCKS--SSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAIVLFNTSLATEMSYR------  235 (356)
T ss_dssp             HHHHHHH--TTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEEEESSGGGHHHHHHH------
T ss_pred             HHHHHHH--cCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEEEEECHHHHhhHHHH------
Confidence            9999999  9999999999864321   111111    3678999999998 5566767998888887665421      


Q ss_pred             cchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEE
Q 015729          232 FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTA  310 (401)
Q Consensus       232 ~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~  310 (401)
                             .. ..|.  ......   .++.++++.+.+..+.+..++..++++++.+.|+++ |+++..+.    ...+++
T Consensus       236 -------~~-~~~~--~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~~~~~~  298 (356)
T 1v72_A          236 -------RK-RAGH--LSSKMR---FLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGT----EANILF  298 (356)
T ss_dssp             -------HH-HTTC--CCSSTH---HHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCC----CSSEEE
T ss_pred             -------hh-ccCc--hhhhHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCC----CccEEE
Confidence                   00 0121  111121   233334444444335567788889999999999885 77765432    234666


Q ss_pred             EEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          311 VIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       311 ~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +.++     .++.+.|.++ ||.+.+|...  ++++|+++...++++|+++++++|++++++.
T Consensus       299 ~~~~-----~~~~~~l~~~-gi~v~~g~~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~  353 (356)
T 1v72_A          299 CRLD-----SAMIDALLKA-GFGFYHDRWG--PNVVRFVTSFATTAEDVDHLLNQVRLAADRT  353 (356)
T ss_dssp             EEEC-----HHHHHHHHHT-TCBCBCSSSS--TTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred             EEcC-----HHHHHHHHhc-CeEEeccccC--CCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence            7774     3788888766 9999887532  6789999877789999999999999887653

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.97  E-value=1.8e-28  Score=238.47  Aligned_cols=340  Identities=13%  Similarity=0.104  Sum_probs=236.7

Q ss_pred             CCCcCChHHHHHHHccCcCCCC-------CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc----CCC
Q 015729           15 PGPVHIPDQVIRAMNRNNEDYR-------SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT----LSP   83 (401)
Q Consensus        15 ~~p~~~~~~v~~a~~~~~~~~~-------~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~----~~~   83 (401)
                      .+.....+++++++........       .....+...++++.+++++|.+.  .+++++||++|+..++.++    .++
T Consensus        73 ~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~--~~~~~~ggt~a~~~al~~~~~~~~~~  150 (474)
T 1wyu_B           73 SCTMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDA--ITLEPAAGAHGELTGILIIRAYHEDR  150 (474)
T ss_dssp             TTCCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc--eeecChHHHHHHHHHHHHHHHHHHhc
Confidence            3334455666666665422111       22345678899999999999875  3678899999998755442    357


Q ss_pred             CC-----eEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc-cchH
Q 015729           84 GD-----RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT-NNLS  157 (401)
Q Consensus        84 gd-----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~-~~l~  157 (401)
                      ||     +|+++.+.|.++.  ..++..|++++.++.+.++.+|+++|++++++    ++++|+++++ |++|.+ .+++
T Consensus       151 Gd~~~r~~Vlv~~~~h~~~~--~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~~----~t~~v~~~~p-n~~G~~~~~l~  223 (474)
T 1wyu_B          151 GEGRTRRVVLVPDSAHGSNP--ATASMAGYQVREIPSGPEGEVDLEALKRELGP----HVAALMLTNP-NTLGLFERRIL  223 (474)
T ss_dssp             TCTTTCCEEEEETTSCTHHH--HHHHHTTCEEEEECBCTTSSBCHHHHHHHCST----TEEEEEECSS-CTTSCCCTTHH
T ss_pred             CCccCCCEEEEeCCcChhhH--HHHHHCCCEEEEecCCCCCCcCHHHHHHhhCC----CceEEEEECC-CCCcccCCCHH
Confidence            77     9999998877654  45778899999999988888999999999974    5689999986 689998 6999


Q ss_pred             HHHHHhhhcCCCcEEEEecccccCcc-eeccCcccceEEEecCCCcccCCC-----cceEEEecHHHHHHhccCC----C
Q 015729          158 KVRKLLDEYRHPALFLVDGVSSICAI-DFRMDEWGIDVALTGSQKALSLPT-----GMGIVCASPKALEASKTAK----S  227 (401)
Q Consensus       158 ~i~~l~~~~~~~~~li~D~a~~~~~~-~~~~~~~~~di~~~s~~K~l~g~~-----g~G~l~~~~~~~~~~~~~~----~  227 (401)
                      +|.++|++  +|+++|+|++|+.+.. ..+...+++|++++|+||+++++.     |+|++++++++.+.+....    .
T Consensus       224 ~i~~l~~~--~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g  301 (474)
T 1wyu_B          224 EISRLCKE--AGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGE  301 (474)
T ss_dssp             HHHHHHHH--HTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECS
T ss_pred             HHHHHHHH--cCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccC
Confidence            99999999  9999999999975543 223344579999999999997653     6899999998876664210    0


Q ss_pred             CccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCce
Q 015729          228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT  307 (401)
Q Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  307 (401)
                      ..+..++. ....  .+....++.+...+.++.+.+..+..+++++..+++.++++++.+.|+++|+++.....  ... 
T Consensus       302 ~~~~~~~~-~~~~--~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~--~~~-  375 (474)
T 1wyu_B          302 EGFYLDFD-RPKS--IGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGP--SMH-  375 (474)
T ss_dssp             SCEEEECC-CTTC--CCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSS--CCS-
T ss_pred             CeeEeccc-Cccc--CcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCCC--cce-
Confidence            01111100 0000  00011122444444444445544445567778999999999999999988777633211  111 


Q ss_pred             eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC-CCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK-VAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       308 ~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~-~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .+++.++.+.+..++.++|.++ ||.+.....+ ..++++||++...++++|+++++++|++++++
T Consensus       376 ~~~~~~~~~~~~~~l~~~L~~~-Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~  440 (474)
T 1wyu_B          376 EFVAQPPEGFRALDLAKGLLEL-GFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK  440 (474)
T ss_dssp             CEEEBCSTTCCHHHHHHHHHHT-TCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred             EEEEEcCCCCCHHHHHHHHHHC-CccccccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence            1334555566788999999877 8875322221 12578999988888999999999999998865

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.97  E-value=3.8e-29  Score=243.55  Aligned_cols=353  Identities=10%  Similarity=-0.000  Sum_probs=245.2

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCC-----CCCccHHHHHHHHHHHHHHHhcCCCCc---------eEEecCChhHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNED-----YRSPAVPALTKTLLEDIKKIFKTTSGT---------PFLIPTTGTGAWE   74 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~~---------~i~~~~g~t~a~~   74 (401)
                      +.+.+.++|...+..+.+.+....+.     ..++...++..++.+.+++++|.+...         ..++++|||+|+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~  159 (481)
T 4e1o_A           80 HMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTL  159 (481)
T ss_dssp             TBCSSSCCCCCHHHHHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHH
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHH
Confidence            55667777766665555555442211     124455667778888889999987532         4789999999998


Q ss_pred             HHHhccC-------------------CCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCC
Q 015729           75 SALTNTL-------------------SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA  135 (401)
Q Consensus        75 ~~~~~~~-------------------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~  135 (401)
                      .++.+..                   .+++.|+++...|++..  +.++..|++++.++++.++.+|+++|+++++++..
T Consensus       160 ~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~--~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~  237 (481)
T 4e1o_A          160 IALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVE--KAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQ  237 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHH--HHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHH--HHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHh
Confidence            8775432                   15678899999888764  45667899999999988889999999999976421


Q ss_pred             --CCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCccee---ccCccc---ceEEEecCCCcccCCC
Q 015729          136 --HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF---RMDEWG---IDVALTGSQKALSLPT  207 (401)
Q Consensus       136 --~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~---~~~~~~---~di~~~s~~K~l~g~~  207 (401)
                        ..+.++++++++|++|.+.|+++|.++|++  +|+++|+|++|+.+....   .....+   +|++++++||++++|.
T Consensus       238 ~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~--~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~  315 (481)
T 4e1o_A          238 RGLVPVFVCATLGTTGVCAFDCLSELGPICAR--EGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHF  315 (481)
T ss_dssp             TTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH--HTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS
T ss_pred             CCCCcEEEEEecCCCCCcCcCCHHHHHHHHHH--cCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCC
Confidence              126788999999999999999999999999  999999999998764322   111113   5999999999999999


Q ss_pred             cceEEEecHHHH-HHhccCCCCccccchHH-HHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 015729          208 GMGIVCASPKAL-EASKTAKSVRVFFDWKD-YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKAT  285 (401)
Q Consensus       208 g~G~l~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l  285 (401)
                      |+|+++++++.. .+.......+....... ........  ...+.. .....+++++..+..+|+++..++..++++++
T Consensus       316 g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~--~~~~r~-~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l  392 (481)
T 4e1o_A          316 DCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQ--IPLSRR-FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYF  392 (481)
T ss_dssp             SCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGS--SSSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCHHHHHHHhcCCchhccCcccCCCCCccccc--ccCCCC-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            999998887643 32222111111000000 00000000  011111 23467788888888888999999999999999


Q ss_pred             HHHHHHc-CCccccCCCccCCceeEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecc-cCCHHHHHHH
Q 015729          286 RLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNELQLLGC  362 (401)
Q Consensus       286 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~-~~~~~di~~~  362 (401)
                      .+.|+++ |+++..+.   .. .+++|.++. +....++.+.|.++..+.+.++... ...++|+++.. .+|++||+++
T Consensus       393 ~~~L~~~~g~~~~~~~---~~-~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-g~~~lR~~~~~~~tt~~di~~~  467 (481)
T 4e1o_A          393 ESLVRNDPSFEIPAKR---HL-GLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQ-DKLIIRFTVTSQFTTRDDILRD  467 (481)
T ss_dssp             HHHHHTCTTEECCSCC---CS-SEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEET-TEEEEEEECCCTTCCHHHHHHH
T ss_pred             HHHHhcCCCeEEecCC---ce-eEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEEC-CEEEEEEEeCCCCCCHHHHHHH
Confidence            9999997 88886532   22 466777742 1235678888887733554444321 23569998765 4589999999


Q ss_pred             HHHHHHHHHhc
Q 015729          363 LAGVEMILKDV  373 (401)
Q Consensus       363 ~~~i~~~l~~~  373 (401)
                      +++|+++++++
T Consensus       468 ~~~i~~~~~~l  478 (481)
T 4e1o_A          468 WNLIRDAATLI  478 (481)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.97  E-value=3.1e-28  Score=232.39  Aligned_cols=333  Identities=14%  Similarity=0.089  Sum_probs=238.1

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCC-C-CC---c----cHH---HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNED-Y-RS---P----AVP---ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA   76 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~-~-~~---~----~~~---~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~   76 (401)
                      +.+.+..+..++++.+++++.+.... . ..   .    ...   .....+++.+++++|.++.  .+++++|++|+..+
T Consensus        24 ~~i~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~--~i~~~sGt~a~~~~  101 (407)
T 2dkj_A           24 EGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWA--NVQPHSGSQANMAV  101 (407)
T ss_dssp             TSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE--ECCCSSHHHHHHHH
T ss_pred             cceeeccCCCCCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcc--eEEecchHHHHHHH
Confidence            34556666566699999999886532 1 10   1    111   2222356799999998742  35556678899999


Q ss_pred             HhccCCCCCeEEEEcCCcchHH-HHHHHHHcCC--cEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCccc
Q 015729           77 LTNTLSPGDRIISFLIGQFSLL-WIDQQQRLNF--NVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGV  152 (401)
Q Consensus        77 ~~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~--~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~  152 (401)
                      +.+++++||+|+++.++|+++. ....++..|.  +.+.++.++ ++.+|++++++.+++   .+++++++++++||  .
T Consensus       102 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~p~~~--~  176 (407)
T 2dkj_A          102 YMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALE---HRPKVIVAGASAYP--R  176 (407)
T ss_dssp             HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHH---HCCSEEEECCSSCC--S
T ss_pred             HHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhh---cCCeEEEEeccccC--C
Confidence            9888999999999999887662 0122233444  344444343 567899999999974   24688888778876  6


Q ss_pred             ccchHHHHHHhhhcCCCcEEEEecccccCcceeccCc---ccceEEEecCCCcccCCCcceEEEec-HHHHHHhccCCCC
Q 015729          153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDE---WGIDVALTGSQKALSLPTGMGIVCAS-PKALEASKTAKSV  228 (401)
Q Consensus       153 ~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~---~~~di~~~s~~K~l~g~~g~G~l~~~-~~~~~~~~~~~~~  228 (401)
                      ..|+++|.++|++  +|+++|+|++|+.|....+...   ..+|++++|.||+++|+.+ |+++++ +++.+.+..... 
T Consensus       177 ~~~l~~i~~l~~~--~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~l~~~~~-  252 (407)
T 2dkj_A          177 FWDFKAFREIADE--VGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRG-GLILSNDPELGKRIDKLIF-  252 (407)
T ss_dssp             CCCHHHHHHHHHH--HTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHHHT-
T ss_pred             CCCHHHHHHHHHH--cCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCc-eEEEECCHHHHHHHHhhhc-
Confidence            7899999999999  9999999999987433222110   1379999999999987775 999999 788776643210 


Q ss_pred             ccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCcee
Q 015729          229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV  308 (401)
Q Consensus       229 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~  308 (401)
                                      .+..++++...++++.++++.....++++..++..++++++.+.|+++|+++..+.   ..+.+
T Consensus       253 ----------------~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~  313 (407)
T 2dkj_A          253 ----------------PGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGYRIVTGG---TDNHL  313 (407)
T ss_dssp             ----------------TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSSE
T ss_pred             ----------------ccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCceeecCC---CCceE
Confidence                            11133466666667788888766556788999999999999999999888776421   23457


Q ss_pred             EEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCC------CCCcEEEEeeccc----CCHHHHHHHHHHHHHHHHh
Q 015729          309 TAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNK------VAGKVFRIGHLGH----LNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       309 ~~~~~~~-~~~~~~l~~~L~~~~~i~v~~g~~~------~~~~~~Ri~~~~~----~~~~di~~~~~~i~~~l~~  372 (401)
                      +++.++. +.+..++.+.|.++ ||.+.++..+      ..++++|+++...    .+++|+++++++|++++++
T Consensus       314 ~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~  387 (407)
T 2dkj_A          314 FLVDLRPKGLTGKEAEERLDAV-GITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE  387 (407)
T ss_dssp             EEEECGGGTCCHHHHHHHHHHT-TEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred             EEEECcccCCCHHHHHHHHHHc-CceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence            7888864 45778899988655 9999987531      2356799987653    7999999999999999987

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.97  E-value=2.5e-28  Score=235.79  Aligned_cols=348  Identities=12%  Similarity=0.080  Sum_probs=228.3

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCCC--cc----------HHHHHHHHHHHHHHHhcCCCCce--EEecCChhHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRS--PA----------VPALTKTLLEDIKKIFKTTSGTP--FLIPTTGTGAWE   74 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~--~~----------~~~~~~~l~~~la~~~g~~~~~~--i~~~~g~t~a~~   74 (401)
                      +..+++|+|..++++|++++.......++  +.          ...+...+++++++++|.+..+.  .++++|||+|+.
T Consensus        55 ~~i~lias~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~  134 (490)
T 2a7v_A           55 RGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANL  134 (490)
T ss_dssp             HSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHH
T ss_pred             cCceEECCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHH
Confidence            45678899999999999999986544331  11          11223345599999999987532  456678999999


Q ss_pred             HHHhccCCCCCeEEEEcCCcchHH---H---HHHHHHcCCcEEEEe--CC-CCCCCChHHHHHHHhccCCCCceEEEEEe
Q 015729           75 SALTNTLSPGDRIISFLIGQFSLL---W---IDQQQRLNFNVDVVE--SD-WGEGAKLDVLASKLAADTAHTIKAICIVH  145 (401)
Q Consensus        75 ~~~~~~~~~gd~vl~~~~~~~~~~---~---~~~~~~~g~~~~~v~--~~-~~~~~d~~~le~~~~~~~~~~~~~i~~~~  145 (401)
                      .++.++++|||+|++.++.|.++.   +   .......|..+..++  ++ .++.+|++++++++.+   +++++|+++.
T Consensus       135 ~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~---~~~klIi~~~  211 (490)
T 2a7v_A          135 AVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARL---FRPRLIIAGT  211 (490)
T ss_dssp             HHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHH---HCCSEEEECC
T ss_pred             HHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhh---cCCcEEEEcC
Confidence            999999999999999998765432   1   012233454444334  34 3568999999999875   2468888776


Q ss_pred             cCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcc-----eeccCcccceEEEecCCCcccCCCcceEEEecHHHHH
Q 015729          146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE  220 (401)
Q Consensus       146 ~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~  220 (401)
                      ++|+  ...|+++|.++|++  +|+++++|++|..|..     +..+.  ++|++++|.||+|.|+.| |+++++++...
T Consensus       212 s~~~--~~~dl~~i~~ia~~--~g~~livD~Ah~~glv~~g~~~~~~~--~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~  284 (490)
T 2a7v_A          212 SAYA--RLIDYARMREVCDE--VKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYRKGVKA  284 (490)
T ss_dssp             SSCC--SCCCHHHHHHHHHH--TTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCSCSC-EEEEEECSEEE
T ss_pred             CCCC--CcccHHHHHHHHHH--cCCEEEEccccccccccCCcCCCCCC--CCCEEEECCcccCccccc-hheeeccchhc
Confidence            6665  56799999999999  9999999999975532     22222  689999999999987776 99998875210


Q ss_pred             HhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCC
Q 015729          221 ASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK  300 (401)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  300 (401)
                       .........+.++....+... .+...++++...++++.+|+......+++...++..++++++++.|.+.|+++....
T Consensus       285 -~~~~~~~~~~~~l~~~i~~~~-~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~~v~~~~  362 (490)
T 2a7v_A          285 -VDPKTGREIPYTFEDRINFAV-FPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGG  362 (490)
T ss_dssp             -EETTTEEEEECCCHHHHHHHH-TTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS
T ss_pred             -ccccccchhhHHHHHHHHHHh-cccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCcEEecCC
Confidence             000000000112222222111 111134577777888888888766545678889999999999999999999886521


Q ss_pred             CccCCceeEEEEcC-CCCCHHHHHHHHHhhCCeEEccCC-----CCCCCcEEEEeecc----cCCHHHHHHHHHHHHHHH
Q 015729          301 EEWFSDTVTAVIVP-SHINSSEIVRRAWQRYNLSLGLGL-----NKVAGKVFRIGHLG----HLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       301 ~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~~i~v~~g~-----~~~~~~~~Ri~~~~----~~~~~di~~~~~~i~~~l  370 (401)
                         ....++++.+. .+.+..++.+.|.+. ||.+..+.     .+.....+|++..+    ..+++|++++++.|.+++
T Consensus       363 ---t~t~lv~vdl~~~g~~~~~~~~~L~~~-GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l  438 (490)
T 2a7v_A          363 ---TDNHLVLVDLRPKGLDGARAERVLELV-SITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGV  438 (490)
T ss_dssp             ---CSSSEEEEECTTTTCCHHHHHHHHHHT-TEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             ---CCCeEEEEEeCCCCCCHHHHHHHHHhC-CeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHH
Confidence               22356777764 356788888888655 99987542     12234679998744    358999999999999988


Q ss_pred             Hh
Q 015729          371 KD  372 (401)
Q Consensus       371 ~~  372 (401)
                      +.
T Consensus       439 ~~  440 (490)
T 2a7v_A          439 NI  440 (490)
T ss_dssp             HH
T ss_pred             Hh
Confidence            63

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.97  E-value=1e-28  Score=237.14  Aligned_cols=331  Identities=13%  Similarity=0.053  Sum_probs=230.7

Q ss_pred             cccccCC-Cc----CChHHHHHHHc--cCcCC---CCCc-cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHH--HH
Q 015729           10 NHLFVPG-PV----HIPDQVIRAMN--RNNED---YRSP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWE--SA   76 (401)
Q Consensus        10 ~~~~~~~-p~----~~~~~v~~a~~--~~~~~---~~~~-~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~--~~   76 (401)
                      .+.|+.| |.    +.++.+.+++.  +....   ...+ .......++++.++++++.++. ++++++|+++++.  .+
T Consensus        27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~-~i~~t~G~~~al~~~~~  105 (423)
T 3ez1_A           27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLDVKAE-NVLVWNNSSLELQGLVL  105 (423)
T ss_dssp             CEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHTTSCGG-GEEECSSCHHHHHHHHH
T ss_pred             eEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHhCCChh-hEEEeCCcHHHHHHHHH
Confidence            3455554 33    36667888875  32211   1223 3345567999999999998764 4999999999997  77


Q ss_pred             HhccCC--C---------CCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEE-
Q 015729           77 LTNTLS--P---------GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIV-  144 (401)
Q Consensus        77 ~~~~~~--~---------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~-  144 (401)
                      +.+++.  +         ||+|+++.|+|+++.  ..++..|++++.++.+.++ +|++++++++++.  +++++|++. 
T Consensus       106 ~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~--~~~~~v~~~~  180 (423)
T 3ez1_A          106 TFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHF--LLLQTLGFELLTVDMQSDG-PDVDAVERLAGTD--PSVKGILFVP  180 (423)
T ss_dssp             HHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHH--HHHHHHTCEEEEEEEETTE-ECHHHHHHHHHSC--TTEEEEEECS
T ss_pred             HHHHhccCCCccccccCCCCEEEEcCCCcHHHH--HHHHHcCCEEEeccCCCCC-CCHHHHHHHHhhC--CCceEEEECC
Confidence            777776  7         599999999887654  5577789999999988764 8999999999621  467888755 


Q ss_pred             ecCCCcccccchH---HHHHHh-hhcCCCcEEEEecccccCccee-------cc-------CcccceEEEecCCCcccCC
Q 015729          145 HNETATGVTNNLS---KVRKLL-DEYRHPALFLVDGVSSICAIDF-------RM-------DEWGIDVALTGSQKALSLP  206 (401)
Q Consensus       145 ~~~n~tG~~~~l~---~i~~l~-~~~~~~~~li~D~a~~~~~~~~-------~~-------~~~~~di~~~s~~K~l~g~  206 (401)
                      +++||||.+++.+   +|.++| ++  +|+++|+|++|+...+..       +.       +..+.++++.|.+|++.++
T Consensus       181 ~~~NPtG~~~~~~~l~~l~~~a~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G  258 (423)
T 3ez1_A          181 TYSNPGGETISLEKARRLAGLQAAA--PDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAG  258 (423)
T ss_dssp             SSCTTTCCCCCHHHHHHHHTCCCSS--TTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSS
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHhc--cCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCC
Confidence            7899999999877   777787 78  999999999988421111       11       2345789999999976556


Q ss_pred             CcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHH-H--HHhcHHHHHHHHHHHHH
Q 015729          207 TGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL-I--FEEGLENVIERHRRLGK  283 (401)
Q Consensus       207 ~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~-~--~~~g~~~~~~~~~~~~~  283 (401)
                      .++|+++.++++.+.+....               .   ...++++.....++.++++. .  ....+++.++.+.++.+
T Consensus       259 ~r~G~~~~~~~~~~~~~~~~---------------~---~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~  320 (423)
T 3ez1_A          259 AGLGFVASSEDNIRWLSKYL---------------G---AQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFR  320 (423)
T ss_dssp             SSCEEEEECHHHHHHHHHHH---------------H---HSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEeCHHHHHHHHHHH---------------h---hhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            77899999999877665321               0   01223555444444444443 0  01224556666666777


Q ss_pred             HHHHHHHH----cC--CccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEcc-CCCC-----CCCcEEEEeec
Q 015729          284 ATRLAVEA----WG--LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGL-GLNK-----VAGKVFRIGHL  351 (401)
Q Consensus       284 ~l~~~L~~----~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~-g~~~-----~~~~~~Ri~~~  351 (401)
                      .+.+.|.+    +|  +.+..+    ..+.++++.++.+ +..++.+.|.++ ||.+.+ |...     ...+++||++.
T Consensus       321 ~l~~~l~~~l~~~~~~~~~~~p----~~g~~~~~~~~~~-~~~~~~~~l~~~-gv~v~~~g~~~~~~~~~~~~~iRis~~  394 (423)
T 3ez1_A          321 AVDEVLRAELGEGGEYATWTLP----KGGYFISLDTAEP-VADRVVKLAEAA-GVSLTPAGATYPAGQDPHNRNLRLAPT  394 (423)
T ss_dssp             HHHHHHHHHHTTTTSSEEECCC----SBSSCEEEEESSS-CHHHHHHHHHHT-TEECCCTTTTSSTTCCSSSCEEEECCS
T ss_pred             HHHHHHHHhcCcCCCceEEeCC----CccEEEEEECCCC-cHHHHHHHHHHC-CcEEecCcccccCCCCCCCCeEEEEcC
Confidence            77777665    23  333332    2445788888655 677888888765 999998 4322     13578999885


Q ss_pred             ccCCHHHHHHHHHHHHHHHHhc
Q 015729          352 GHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       352 ~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      . .+++++++++++|+++++++
T Consensus       395 ~-~~~~~i~~~~~~l~~~l~~~  415 (423)
T 3ez1_A          395 R-PPVEEVRTAMQVVAACIRLA  415 (423)
T ss_dssp             S-SCHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCHHHHHHHHHHHHHHHHHH
Confidence            4 49999999999999998764

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.97  E-value=2.8e-29  Score=241.33  Aligned_cols=299  Identities=9%  Similarity=-0.016  Sum_probs=217.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHH--HHHHhccCC--C----------CCeEEEEcCCcchHHHHHHHHHc
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAW--ESALTNTLS--P----------GDRIISFLIGQFSLLWIDQQQRL  106 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~--~~~~~~~~~--~----------gd~vl~~~~~~~~~~~~~~~~~~  106 (401)
                      .....++++.++++++.++. ++++++|+++++  +.++.+++.  +          ||+|+++.|+|+++.  ..++..
T Consensus        77 ~~g~~~lr~~ia~~~~~~~~-~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~--~~~~~~  153 (427)
T 3ppl_A           77 LDGIVDIRQIWADLLGVPVE-QVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHF--SITERF  153 (427)
T ss_dssp             SSCCHHHHHHHHHHHTSCGG-GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHH--HHHHHT
T ss_pred             CCCcHHHHHHHHHHhCCCcc-eEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHH--HHHHHc
Confidence            34567999999999988764 499999999999  577777665  6          899999999887654  567888


Q ss_pred             CCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEE-ecCCCcccccchH---HHHHHh-hhcCCCcEEEEecccccC
Q 015729          107 NFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIV-HNETATGVTNNLS---KVRKLL-DEYRHPALFLVDGVSSIC  181 (401)
Q Consensus       107 g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~-~~~n~tG~~~~l~---~i~~l~-~~~~~~~~li~D~a~~~~  181 (401)
                      |++++.++.+.++ +|+++++++++.   +++++++++ +++||||.+++.+   +|.++| ++  +|++||+|++|+..
T Consensus       154 g~~~~~v~~~~~g-~d~~~l~~~l~~---~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~--~~~~ii~De~y~~~  227 (427)
T 3ppl_A          154 GFEMISVPMNEDG-PDMDAVEELVKN---PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAA--PDFRVVWDNAYAVH  227 (427)
T ss_dssp             TCEEEEEEEETTE-ECHHHHHHHTTS---TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSS--TTCEEEEECTTTTC
T ss_pred             CCEEEEeCCCCCC-CCHHHHHHHHhc---CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhc--CCCEEEEECCCccc
Confidence            9999999988765 899999999843   467888866 7899999999877   788888 88  99999999998753


Q ss_pred             cc------eecc-------CcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCC
Q 015729          182 AI------DFRM-------DEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP  248 (401)
Q Consensus       182 ~~------~~~~-------~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  248 (401)
                      .+      +.+.       +..+.++++.|.+|++.++.++|+++.++++.+.+....             ..     ..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~-------------~~-----~~  289 (427)
T 3ppl_A          228 TLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHA-------------GI-----RG  289 (427)
T ss_dssp             BSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHH-------------HH-----HC
T ss_pred             ccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHHHh-------------hc-----cc
Confidence            21      1111       134678999999998655667899999998877664321             00     01


Q ss_pred             CCCcHHHHHHHHHHHHHH--HHhcHHHHHHHHHHHHHHHHHHHHH----c-CCccccCCCccCCceeEEEEcCCCCCHHH
Q 015729          249 YTPSIQLLYGLRAALDLI--FEEGLENVIERHRRLGKATRLAVEA----W-GLKNCTQKEEWFSDTVTAVIVPSHINSSE  321 (401)
Q Consensus       249 ~~~~~~~~~a~~~al~~~--~~~g~~~~~~~~~~~~~~l~~~L~~----~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (401)
                      .+++.....++.++++..  ....+++.++.+.++.+.+.+.|.+    + ++.+..+    ..+.++++.+++. +..+
T Consensus       290 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p----~~g~~~~~~~~~~-~~~~  364 (427)
T 3ppl_A          290 IGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVP----AGGYFISLDVVPG-TASR  364 (427)
T ss_dssp             SCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCC----SBSSCEEEECSTT-CHHH
T ss_pred             CCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCC----CccEEEEEECCcc-hHHH
Confidence            234454444444444421  1223556677777777777777765    2 3444333    2356788898755 6788


Q ss_pred             HHHHHHhhCCeEEccCCC-C-----CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          322 IVRRAWQRYNLSLGLGLN-K-----VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       322 l~~~L~~~~~i~v~~g~~-~-----~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +.+.|.++ ||.+.++.. .     ...+++||++.. .+++++++++++|+++++++
T Consensus       365 ~~~~l~~~-gv~v~~~g~~~~~~~~~~~~~~Ris~~~-~~~~~i~~~~~~l~~~l~~~  420 (427)
T 3ppl_A          365 VAELAKEA-GIALTGAGSSYPLRQDPENKNLRLAPSL-PPVEELEVAMDGVATCVLLA  420 (427)
T ss_dssp             HHHHHHHT-TEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHC-CCEEecCcCcCCCCCCCCCCeEEEECCC-CCHHHHHHHHHHHHHHHHHH
Confidence            88888765 999998422 1     135789998844 58999999999999998764

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.97  E-value=1.8e-28  Score=241.06  Aligned_cols=324  Identities=14%  Similarity=0.093  Sum_probs=223.2

Q ss_pred             ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC-------C-CCC------eEEEEcCCcchHHHHHHH
Q 015729           38 PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------S-PGD------RIISFLIGQFSLLWIDQQ  103 (401)
Q Consensus        38 ~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~-------~-~gd------~vl~~~~~~~~~~~~~~~  103 (401)
                      +...+...++++.+++++|.+. ..+++++|||+|+..++.+..       + +|+      +|+++..+|++..  ..+
T Consensus       144 ~~~~~le~~~~~~la~l~g~~~-~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~--~~~  220 (515)
T 2jis_A          144 PVFVLMEEEVLRKLRALVGWSS-GDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQ--KGA  220 (515)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSS-CEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH--HHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCCC-CCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHH--HHH
Confidence            4455678889999999999974 459999999999988776542       2 465      7888888888765  455


Q ss_pred             HHcCC---cEEEEeCCCCCCCChHHHHHHHhccC--CCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEeccc
Q 015729          104 QRLNF---NVDVVESDWGEGAKLDVLASKLAADT--AHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS  178 (401)
Q Consensus       104 ~~~g~---~~~~v~~~~~~~~d~~~le~~~~~~~--~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~  178 (401)
                      +..|.   +++.++.+.++.+|+++|+++++++.  +.++++|++++++|++|.+.|+++|.++|++  +|+++|+|+++
T Consensus       221 ~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~--~g~~l~vD~a~  298 (515)
T 2jis_A          221 AFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQR--HGLWLHVDAAW  298 (515)
T ss_dssp             HHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH--HTCEEEEEETT
T ss_pred             HHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHH--cCCeEEEehhh
Confidence            66677   99999998888999999999997531  1247999999999999999999999999999  99999999999


Q ss_pred             ccCcceec-----cCcc-cceEEEecCCCcccCCCcceEEEecHH--HHHHhccCCCCccccchHHHHHHhhcCCC-CCC
Q 015729          179 SICAIDFR-----MDEW-GIDVALTGSQKALSLPTGMGIVCASPK--ALEASKTAKSVRVFFDWKDYIKFYNLGTF-WPY  249 (401)
Q Consensus       179 ~~~~~~~~-----~~~~-~~di~~~s~~K~l~g~~g~G~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~  249 (401)
                      +.+....+     .... ++|++++++||++++|.|+|+++++++  ++++...................++.+.. ...
T Consensus       299 ~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~  378 (515)
T 2jis_A          299 GGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQC  378 (515)
T ss_dssp             GGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCS
T ss_pred             hhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCC
Confidence            98776543     3333 789999999999988889999999877  65543221111100000000000111100 000


Q ss_pred             CCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEc-CCCC----CHH---
Q 015729          250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV-PSHI----NSS---  320 (401)
Q Consensus       250 ~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~----~~~---  320 (401)
                      +.. ....++++++..+...|+++..++..++++++.+.|+++ |+++..+.   ... .+.|.. |.+.    +..   
T Consensus       379 ~rr-~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~---~~~-~v~f~~~p~~~~~~~~~~~~~  453 (515)
T 2jis_A          379 GRR-VDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEP---EFV-NVCFWFVPPSLRGKQESPDYH  453 (515)
T ss_dssp             SCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCC---SSS-EEEEEECCGGGTTCTTSTTHH
T ss_pred             CCc-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC---Cee-EEEEEEeCccccccccchhHH
Confidence            000 012345556666667788899999999999999999997 88876532   122 344543 3211    111   


Q ss_pred             --------HHHHHHHhhCCeEE-ccCCCCCCCcEEEEee-cccCCHHHHHHHHHHHHHHHHh
Q 015729          321 --------EIVRRAWQRYNLSL-GLGLNKVAGKVFRIGH-LGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       321 --------~l~~~L~~~~~i~v-~~g~~~~~~~~~Ri~~-~~~~~~~di~~~~~~i~~~l~~  372 (401)
                              .+.+.|.+. |+.+ .........+++|+++ ..++|++|+++++++|++++++
T Consensus       454 ~~l~~~~~~l~~~l~~~-G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~  514 (515)
T 2jis_A          454 ERLSKVAPVLKERMVKE-GSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD  514 (515)
T ss_dssp             HHHHTHHHHHHHHHHHH-TSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhc-CCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence                    255666666 6443 2111111235799998 6788999999999999988754

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.97  E-value=8.2e-29  Score=238.76  Aligned_cols=308  Identities=14%  Similarity=0.073  Sum_probs=222.1

Q ss_pred             cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc-cCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeC
Q 015729           39 AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN-TLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVES  115 (401)
Q Consensus        39 ~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~-~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~  115 (401)
                      ...+...++++++++++|.+.. ++++++|+|.+++.+..+ .+++||+|+++.+.|+++.  +...++..|++++.++.
T Consensus       105 g~~~~~~~~~~~la~~~g~~~~-~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~  183 (438)
T 1wyu_A          105 GVLQATFEYQTMIAELAGLEIA-NASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL  183 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSEE-CSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             hHHHHHHHHHHHHHHHhCCCcc-ceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC
Confidence            3556788999999999999753 378899999555544333 3578999999999988875  44556778999999987


Q ss_pred             CCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecc-cccCcceeccCcccceE
Q 015729          116 DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGV-SSICAIDFRMDEWGIDV  194 (401)
Q Consensus       116 ~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a-~~~~~~~~~~~~~~~di  194 (401)
                       .++.+|+++    ++    +++++|+++++ |++|.+.|+++|.++|++  +|+++|+|.. +++|....+ ..+++|+
T Consensus       184 -~~~~~d~~~----i~----~~t~~v~i~~p-n~tG~~~~l~~i~~la~~--~g~~vivd~d~~a~g~~~~~-~~~g~D~  250 (438)
T 1wyu_A          184 -EGGRTPLPE----VG----EEVGAVVVQNP-NFLGALEDLGPFAEAAHG--AGALFVAVADPLSLGVLKPP-GAYGADI  250 (438)
T ss_dssp             -BTTBCCCCC----CC----TTEEEEEEESS-CTTSBCCCHHHHHHHHHH--TTCEEEEECCTTGGGTBCCH-HHHTCSE
T ss_pred             -cCCccCHHH----hC----CCeEEEEEECC-CCCeEEecHHHHHHHHHH--cCCEEEEEechhhccCcCCC-ccCCCCE
Confidence             455677766    43    46799999998 999999999999999999  9999997754 555544333 4467999


Q ss_pred             EEecCCC-----cccCCCcceEEEecHHHHHHhccCCC---------Cccccch--HHHHHHhhcCCCCCCCCcHHHHHH
Q 015729          195 ALTGSQK-----ALSLPTGMGIVCASPKALEASKTAKS---------VRVFFDW--KDYIKFYNLGTFWPYTPSIQLLYG  258 (401)
Q Consensus       195 ~~~s~~K-----~l~g~~g~G~l~~~~~~~~~~~~~~~---------~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~a  258 (401)
                      +++|+||     +++|+ |+|++++++++.+.+.....         ..+.+++  .....+++.++....+.  ..+++
T Consensus       251 ~~~s~kk~~~~~~~~Gp-~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~--~~~~a  327 (438)
T 1wyu_A          251 AVGDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTN--AQLTA  327 (438)
T ss_dssp             EEEECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSC--CHHHH
T ss_pred             EEECCcccCCCccCCCC-CeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccch--HHHHH
Confidence            9999777     56556 89999999988776643211         0111111  12333444554211112  23344


Q ss_pred             HHHH--HHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEE-
Q 015729          259 LRAA--LDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSL-  334 (401)
Q Consensus       259 ~~~a--l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v-  334 (401)
                      +.++  +..+.++|++++.++..++++++.+.|+++ |+++..+. . . ...+.+..+  .+..++.++|.++ ||.+ 
T Consensus       328 ~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~-~-~~~~~~~~~--~~~~~~~~~L~~~-gi~v~  401 (438)
T 1wyu_A          328 LMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK-P-F-FNEFALALP--KDPEAVRRALAER-GFHGA  401 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS-S-B-CSEEEEECS--SCHHHHHHHHHHT-TCCCC
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC-C-e-EEEEEEeCC--CCHHHHHHHHHHC-Cceec
Confidence            4444  666666678889999999999999999998 98886532 1 1 123445543  4678999999876 9988 


Q ss_pred             -ccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          335 -GLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       335 -~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                       .++... .++++||++..++|++|+++++++|++++
T Consensus       402 ~~~~~~~-~~~~lRis~~~~~t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          402 TPVPREY-GENLALFAATELHEEEDLLALREALKEVL  437 (438)
T ss_dssp             EECCTTS-CSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             ccccccc-CCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence             555432 26789999998899999999999998764

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.97  E-value=8.2e-29  Score=240.58  Aligned_cols=352  Identities=13%  Similarity=0.022  Sum_probs=241.3

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCC-----CCCccHHHHHHHHHHHHHHHhcCCCC--------ceEEecCChhHHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNED-----YRSPAVPALTKTLLEDIKKIFKTTSG--------TPFLIPTTGTGAWES   75 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~--------~~i~~~~g~t~a~~~   75 (401)
                      +.+.+.++|...+..+.+.+....+.     ..++...++..++.+.+++++|.+..        ...++++|||+|+..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~  154 (475)
T 3k40_A           75 KFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLV  154 (475)
T ss_dssp             TBCCSSCCCCCHHHHHHHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHH
T ss_pred             CceeeCCCCCcHHHHHHHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHH
Confidence            45556666666555555555542211     12345566777788888999998753        258899999999987


Q ss_pred             HHhccC-------------------CCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCC-
Q 015729           76 ALTNTL-------------------SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA-  135 (401)
Q Consensus        76 ~~~~~~-------------------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~-  135 (401)
                      ++.+..                   .+++.|+++...|++..  +.++..|++++.|+++.++ +|+++|++++++++. 
T Consensus       155 al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~--~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~  231 (475)
T 3k40_A          155 ALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVE--RAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAE  231 (475)
T ss_dssp             HHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHH--HHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHH--HHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHC
Confidence            775431                   13467899989888764  5567789999999999888 999999999986421 


Q ss_pred             -CCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceec---c--Cc-ccceEEEecCCCcccCCCc
Q 015729          136 -HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR---M--DE-WGIDVALTGSQKALSLPTG  208 (401)
Q Consensus       136 -~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~---~--~~-~~~di~~~s~~K~l~g~~g  208 (401)
                       ..++++++++++|++|.+.|+++|.++|++  +|+++|+|++|+.+....+   .  .. ..+|++++++||++++|.|
T Consensus       232 ~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~--~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g  309 (475)
T 3k40_A          232 GLIPFYAVVTLGTTNSCAFDYLDECGPVGNK--HNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFD  309 (475)
T ss_dssp             TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH--TTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS
T ss_pred             CCccEEEEEEecCCCCcCcCCHHHHHHHHHH--hCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCc
Confidence             126788899999999999999999999999  9999999999987643221   1  11 1469999999999999999


Q ss_pred             ceEEEecHHHH-HHhccCCCCccccchHHHHHHhhcCCC-CCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 015729          209 MGIVCASPKAL-EASKTAKSVRVFFDWKDYIKFYNLGTF-WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATR  286 (401)
Q Consensus       209 ~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~  286 (401)
                      +|+++++++.. .+.......  |............+.+ ...+.+ .....++++++.+...|+++..++..++++++.
T Consensus       310 ~g~l~~~~~~~l~~~~~~~~~--yl~~~~~~~~~~~~~~~~~~sr~-~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~  386 (475)
T 3k40_A          310 CSAMWLKDPSWVVNAFNVDPL--YLKHDMQGSAPDYRHWQIPLGRR-FRALKLWFVLRLYGVENLQAHIRRHCNFAKQFG  386 (475)
T ss_dssp             CEEEEESSGGGC-----------------------------CCCGG-GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCHHHHHHHhcCCcc--ccCCCcCCCCCCcccccccCCCc-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            99999887532 211111111  1110000000000000 011111 245678888888888889999999999999999


Q ss_pred             HHHHHc-CCccccCCCccCCceeEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecc-cCCHHHHHHHH
Q 015729          287 LAVEAW-GLKNCTQKEEWFSDTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNELQLLGCL  363 (401)
Q Consensus       287 ~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~-~~~~~di~~~~  363 (401)
                      +.|+++ |+++..+.   .. .+++|.++. .....++.++|.++.++.+.++... ...++|+++.. .+|++||++++
T Consensus       387 ~~L~~~~g~~l~~~~---~~-~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-g~~~lR~~~~~~~tt~~di~~~~  461 (475)
T 3k40_A          387 DLCVADSRFELAAEI---NM-GLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIK-DVYFLRMAICSRFTQSEDMEYSW  461 (475)
T ss_dssp             HHHHHSTTEEESSCC---BT-TEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEET-TEEEEEEECCCTTCCHHHHHHHH
T ss_pred             HHHhcCCCEEEecCC---ce-EEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEEC-CEEEEEEEeCCCCCCHHHHHHHH
Confidence            999997 88887542   23 466777742 1235688888888744555444322 24579998765 45899999999


Q ss_pred             HHHHHHHHhc
Q 015729          364 AGVEMILKDV  373 (401)
Q Consensus       364 ~~i~~~l~~~  373 (401)
                      ++|+++++++
T Consensus       462 ~~i~~~~~~~  471 (475)
T 3k40_A          462 KEVSAAADEM  471 (475)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.97  E-value=5.8e-28  Score=229.18  Aligned_cols=326  Identities=16%  Similarity=0.083  Sum_probs=226.8

Q ss_pred             ChHHHHHHHccCcCCC-CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCCCeEEEEcCCcchH
Q 015729           20 IPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSL   97 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~   97 (401)
                      +.+++++++.+..... ..+.......++++.+++++|.+  +.++++ +||+|++.++.++ +++||+|+++.++|++.
T Consensus        15 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~la~~~~~~--~~i~~~-sGt~al~~~l~~l~~~~gd~Vi~~~~~~~~~   91 (388)
T 1b9h_A           15 YDDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHGAA--HALAVT-NGTHALELALQVMGVGPGTEVIVPAFTFISS   91 (388)
T ss_dssp             CCHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTTCS--EEEEES-CHHHHHHHHHHHTTCCTTCEEEEESSSCTHH
T ss_pred             CCHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHhCCC--eEEEeC-CHHHHHHHHHHHcCCCCcCEEEECCCccHHH
Confidence            4466777776643221 12233456789999999999986  335555 5699999999888 89999999999998887


Q ss_pred             HHHHHHHHcCCcEEEEeCCCC-CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEec
Q 015729           98 LWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDG  176 (401)
Q Consensus        98 ~~~~~~~~~g~~~~~v~~~~~-~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~  176 (401)
                      .  ..++..|++++.++++++ +.+|++++++++++    ++++|+   ++|++|.+.++++|.++|++  +|+++|+|+
T Consensus        92 ~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~----~~~~v~---~~n~tG~~~~l~~i~~la~~--~~~~li~D~  160 (388)
T 1b9h_A           92 S--QAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTP----RTKVIM---PVHMAGLMADMDALAKISAD--TGVPLLQDA  160 (388)
T ss_dssp             H--HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT----TEEEEC---CBCGGGCCCCHHHHHHHHHH--HTCCBCEEC
T ss_pred             H--HHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc----CceEEE---EeCCccCcCCHHHHHHHHHH--cCCEEEEec
Confidence            5  456778999999999864 67899999999863    567766   78999999999999999999  999999999


Q ss_pred             ccccCcce--eccCccc-ceEEEecCCCcccCCCcceEEEecHH-H--HHHhccCCCCccccchHHHHHHh---hcCCCC
Q 015729          177 VSSICAID--FRMDEWG-IDVALTGSQKALSLPTGMGIVCASPK-A--LEASKTAKSVRVFFDWKDYIKFY---NLGTFW  247 (401)
Q Consensus       177 a~~~~~~~--~~~~~~~-~di~~~s~~K~l~g~~g~G~l~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~  247 (401)
                      +|+.|...  .+....+ +++..+|.||+++|+. .|+++++++ +  .+.+........  ..  ....+   ..|+  
T Consensus       161 a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~-~G~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~g~--  233 (388)
T 1b9h_A          161 AHAHGARWQGKRVGELDSIATFSFQNGKLMTAGE-GGAVVFPDGETEKYETAFLRHSCGR--PR--DDRRYFHKIAGS--  233 (388)
T ss_dssp             TTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSS-CEEEEECTTCHHHHHHHHHHTBTTC--CT--TCSSCCCCSCCC--
T ss_pred             chhcCCccCCeecccccceEEEEccCCCcccCCC-eEEEEECCHHHHHHHHHHHHHhCCC--Cc--cCccceeecccc--
Confidence            99977544  3333444 6667777889997654 599998876 4  444422110000  00  00000   0111  


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc--cCCceeEEEEcCCC--CCHHHH
Q 015729          248 PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE--WFSDTVTAVIVPSH--INSSEI  322 (401)
Q Consensus       248 ~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~l  322 (401)
                      ....+...++++..+++     .+++..++++++++++.+.|+++ |+.+....+.  ...+.++++.++..  .+..++
T Consensus       234 ~~~~~~~~~a~~~~~~~-----~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  308 (388)
T 1b9h_A          234 NMRLNEFSASVLRAQLA-----RLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNAL  308 (388)
T ss_dssp             BCBCBHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcCcccHHHH
Confidence            11244443333322222     35667788888999999999987 7776543211  13346788888642  256789


Q ss_pred             HHHHHhhCCeEEccCCCCCC-----------------------------CcEEEEeecccC-CHHHHHHHHHHHHHHHHh
Q 015729          323 VRRAWQRYNLSLGLGLNKVA-----------------------------GKVFRIGHLGHL-NELQLLGCLAGVEMILKD  372 (401)
Q Consensus       323 ~~~L~~~~~i~v~~g~~~~~-----------------------------~~~~Ri~~~~~~-~~~di~~~~~~i~~~l~~  372 (401)
                      .+.|.++ ||.++.++.+..                             ...+||+++..+ |++|+++++++|++++++
T Consensus       309 ~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~  387 (388)
T 1b9h_A          309 VDRLVEA-GLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR  387 (388)
T ss_dssp             HHHHHHT-TCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHC-CCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence            9999865 999987754310                             125999999889 999999999999998764

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.96  E-value=4.4e-28  Score=226.77  Aligned_cols=307  Identities=13%  Similarity=0.087  Sum_probs=222.4

Q ss_pred             CCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcc
Q 015729           16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF   95 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~   95 (401)
                      .|.+.++.+++++.+.......+.... ..++++.+++++|.+++ ++++++|+++|+..++.++.  ||+|+++.++|+
T Consensus        25 ~~~~~~~~v~~a~~~~~~~~~~y~~~~-~~~lr~~la~~~~~~~~-~i~~t~g~~~al~~~~~~l~--gd~Vi~~~p~~~  100 (350)
T 3fkd_A           25 WTDGDKDHLEKHLVENLNCIRHYPEPD-AGTLRQMLAKRNSVDNN-AILVTNGPTAAFYQIAQAFR--GSRSLIAIPSFA  100 (350)
T ss_dssp             CCCSCCHHHHHHHHHTGGGGGSCCCTT-CHHHHHHHHHHTTCCGG-GEEEESHHHHHHHHHHHHTT--TCEEEEEESCCH
T ss_pred             CCCCCCHHHHHHHHHhHhHHhcCCCCc-HHHHHHHHHHHhCcCHH-HEEEcCCHHHHHHHHHHHHC--CCEEEEeCCCcH
Confidence            356678889998887552221221112 26899999999998654 49999999999999988876  999999999877


Q ss_pred             hHHHHHHHHHcCCcEEEEeC-CCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEE
Q 015729           96 SLLWIDQQQRLNFNVDVVES-DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLV  174 (401)
Q Consensus        96 ~~~~~~~~~~~g~~~~~v~~-~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~  174 (401)
                      +..  ..++..|++++.++. +....+++            ++++++++++++||||.+.|++++.++++.++ ..+||+
T Consensus       101 ~~~--~~~~~~g~~~~~v~~~~~~~~~~~------------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~-~~~li~  165 (350)
T 3fkd_A          101 EYE--DACRMYEHEVCFYPSNEDIGEADF------------SNMDFCWLCNPNNPDGRLLQRTEILRLLNDHP-DTTFVL  165 (350)
T ss_dssp             HHH--HHHHHTTCEEEEEETTSCGGGSCC------------TTCSEEEEESSCTTTCCCCCHHHHHHHHHHCT-TSEEEE
T ss_pred             HHH--HHHHHcCCeEEEEecCCccccCcc------------CCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCC-CCEEEE
Confidence            654  567888999999998 65444554            25689999999999999999999999999832 159999


Q ss_pred             ecccccCcce-----eccCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCC
Q 015729          175 DGVSSICAID-----FRMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP  248 (401)
Q Consensus       175 D~a~~~~~~~-----~~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  248 (401)
                      |++|+.....     ......+.++++.|.+|+++ ++.++|+++.++++.+.+.....                    .
T Consensus       166 Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~--------------------~  225 (350)
T 3fkd_A          166 DQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFST--------------------P  225 (350)
T ss_dssp             ECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTCC--------------------T
T ss_pred             ECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhCC--------------------C
Confidence            9998754321     12234456799999999985 34457999999998887765321                    2


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHH
Q 015729          249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAW  327 (401)
Q Consensus       249 ~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  327 (401)
                      ++++...+.++.++++...  .+.+..++..++++++.+.|+++ |+.+..+     .+.++++.+|.. +..++.+.|.
T Consensus       226 ~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~l~~~L~  297 (350)
T 3fkd_A          226 WAVNALAIEAAKFILIHPA--QFTLPIRKWQRNTVDFITALNRLDGVEVHPS-----GTTFFLLRLKKG-TAAELKKYML  297 (350)
T ss_dssp             TCSCHHHHHHHHHHHHCTT--TTCCCHHHHHHHHHHHHHHHHHSTTEEECCC-----SSSEEEEEESSS-CHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHHHHHhcCCCcEECCC-----CCcEEEEECCCC-CHHHHHHHHH
Confidence            2456655555555554211  12223333448889999999887 7776442     234566888765 7889999998


Q ss_pred             hhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          328 QRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       328 ~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      ++.||.+.+|..+  ..++++||++.   +++|+++++++|++++++
T Consensus       298 ~~~gi~v~~g~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~~~~  341 (350)
T 3fkd_A          298 EEYNMLIRDASNFRGLDESYVRITTQ---RPAQNQLFIKALETFLEK  341 (350)
T ss_dssp             HTTCEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHTC
T ss_pred             HHCCEEEEeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHHH
Confidence            7459999988543  23678999754   789999999999988753

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.96  E-value=1.1e-28  Score=232.97  Aligned_cols=333  Identities=11%  Similarity=0.087  Sum_probs=235.2

Q ss_pred             cccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCCCeEE
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRII   88 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl   88 (401)
                      .+.++.+.....+ +.+++.+..... .+.......++++.++++++.+   .+++++|||+|+..++.++ +++||+|+
T Consensus         8 ~~~l~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~a~~~~~~~~~~~~gd~v~   82 (374)
T 3uwc_A            8 YSYLERQFADIEP-YLNDLREFIKTA-DFTLGAELEKFEKRFAALHNAP---HAIGVGTGTDALAMSFKMLNIGAGDEVI   82 (374)
T ss_dssp             SCCHHHHTSSCHH-HHHHHHHHHHHT-CCSSCHHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHHHHTTCCTTCEEE
T ss_pred             eeccccCCCCchH-HHHHHHHHHHcC-CcccChhHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHcCCCCCCEEE
Confidence            3455556666666 777777643322 1233567889999999999886   3889999999999999988 99999999


Q ss_pred             EEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCC
Q 015729           89 SFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRH  168 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~  168 (401)
                      ++.++|++..  ..++..|++++.++.+.++.+|++++++++++    ++++++   ++||||.+.|+++|.++|++  +
T Consensus        83 ~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~v~---~~n~~G~~~~~~~i~~~~~~--~  151 (374)
T 3uwc_A           83 TCANTFIASV--GAIVQAGATPVLVDSENGYVIDPEKIEAAITD----KTKAIM---PVHYTGNIADMPALAKIAKK--H  151 (374)
T ss_dssp             EESSSCHHHH--HHHHHTTCEEEEECBCTTSSBCGGGTGGGCCT----TEEEEC---CBCGGGCCCCHHHHHHHHHH--T
T ss_pred             ECCCccHHHH--HHHHHcCCEEEEEecCCCCCcCHHHHHHhCCC----CceEEE---EeCCcCCcCCHHHHHHHHHH--c
Confidence            9999888765  45678899999999987778899999998874    557766   78899999999999999999  9


Q ss_pred             CcEEEEecccccCcceeccCccc--ceEEEecCC--CcccCCCcceEEEecH-HHHHHhccCCCCccccchHHHHHHhhc
Q 015729          169 PALFLVDGVSSICAIDFRMDEWG--IDVALTGSQ--KALSLPTGMGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNL  243 (401)
Q Consensus       169 ~~~li~D~a~~~~~~~~~~~~~~--~di~~~s~~--K~l~g~~g~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (401)
                      |+++|+|++|+.|.. ++....+  .|++++|.|  |++++....|+++.++ ++.+.+..........       .+..
T Consensus       152 ~~~li~D~~~~~g~~-~~~~~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  223 (374)
T 3uwc_A          152 NLHIVEDACQTILGR-INDKFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLIN-------RDVC  223 (374)
T ss_dssp             TCEEEEECTTCTTCE-ETTEETTSSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEE-------TTEE
T ss_pred             CCEEEEeCCCccCce-eCCeeccccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCccc-------cCcc
Confidence            999999999998754 3333333  699999966  9996523357777654 5555444322111000       0100


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-C-CccccCCCc-cCCceeEEEEcCCCCCHH
Q 015729          244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-G-LKNCTQKEE-WFSDTVTAVIVPSHINSS  320 (401)
Q Consensus       244 g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g-~~~~~~~~~-~~~~~~~~~~~~~~~~~~  320 (401)
                      .. ...+..   +..+.+++......++++..++.+++.+++.+.|.++ + +.+...... ...+..+.+..+   +..
T Consensus       224 ~~-~~~~~~---~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  296 (374)
T 3uwc_A          224 VE-YGINCR---MDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVK---YRD  296 (374)
T ss_dssp             SS-CCCBCB---CCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEET---THH
T ss_pred             cc-ccccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcC---CHH
Confidence            00 000111   1234455555555567888888999999999999887 4 555432211 112223334432   578


Q ss_pred             HHHHHHHhhCCeEEccCCC-CC----------------------CCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          321 EIVRRAWQRYNLSLGLGLN-KV----------------------AGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       321 ~l~~~L~~~~~i~v~~g~~-~~----------------------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      ++.+.|.++ ||.+++++. +.                      ....+|++++..+|++|+++++++|++++++.+
T Consensus       297 ~l~~~L~~~-gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~~~  372 (374)
T 3uwc_A          297 QLFQYLKDN-GIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLEKH  372 (374)
T ss_dssp             HHHHHHHHT-TBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHC-CCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            899999876 999988761 00                      015799999999999999999999999998754

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.96  E-value=5.9e-28  Score=236.81  Aligned_cols=320  Identities=12%  Similarity=0.104  Sum_probs=222.9

Q ss_pred             ccHHHHHHHHHHHHHHHhcCCC-CceEEecCChhHHHHHHHhccCC--------CC-----C-eEEEEcCCcchHHHHHH
Q 015729           38 PAVPALTKTLLEDIKKIFKTTS-GTPFLIPTTGTGAWESALTNTLS--------PG-----D-RIISFLIGQFSLLWIDQ  102 (401)
Q Consensus        38 ~~~~~~~~~l~~~la~~~g~~~-~~~i~~~~g~t~a~~~~~~~~~~--------~g-----d-~vl~~~~~~~~~~~~~~  102 (401)
                      +....+..++++.+++++|.+. ...+++++|||+|+..++.+...        +|     + .|+++.++|+++.  ..
T Consensus       128 ~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~--~~  205 (504)
T 2okj_A          128 PVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK--KA  205 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH--HH
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHH--HH
Confidence            3344556778899999999873 44599999999999988766431        45     6 6888888888765  44


Q ss_pred             HHHcCC---cEEEEeCCCCCCCChHHHHHHHhccC--CCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecc
Q 015729          103 QQRLNF---NVDVVESDWGEGAKLDVLASKLAADT--AHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGV  177 (401)
Q Consensus       103 ~~~~g~---~~~~v~~~~~~~~d~~~le~~~~~~~--~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a  177 (401)
                      ++..|.   +++.++.+.++.+|+++|+++++++.  +.++++|++++++|++|.+.|+++|.++|++  +|+++|+|++
T Consensus       206 ~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~--~g~~lhvD~a  283 (504)
T 2okj_A          206 GAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEK--YNLWLHVDAA  283 (504)
T ss_dssp             HHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHH--HTCEEEEEET
T ss_pred             HHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHH--cCCEEEEehh
Confidence            555565   89999998888999999999997521  1247899999999999999999999999999  9999999999


Q ss_pred             cccCcce-----eccCc-ccceEEEecCCCcccCCCcceEEEecHH-HHHHhccCCCCccc---------cchHHHHHHh
Q 015729          178 SSICAID-----FRMDE-WGIDVALTGSQKALSLPTGMGIVCASPK-ALEASKTAKSVRVF---------FDWKDYIKFY  241 (401)
Q Consensus       178 ~~~~~~~-----~~~~~-~~~di~~~s~~K~l~g~~g~G~l~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~  241 (401)
                      ++.+...     ..... .++|++++++||+++++.|+|+++++++ ..............         .++.+  ..+
T Consensus       284 ~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~  361 (504)
T 2okj_A          284 WGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGD--KAI  361 (504)
T ss_dssp             TGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGG--GSS
T ss_pred             hhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCccc--CCC
Confidence            9877653     22232 3789999999999988889999999874 55542211111110         00000  000


Q ss_pred             hcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEc-CCCC--
Q 015729          242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV-PSHI--  317 (401)
Q Consensus       242 ~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~--  317 (401)
                      ..+.    ....   .++.++++.+...|+++..++..++++++.+.|++. |+++..+.+. ..+ ++.|.. |...  
T Consensus       362 ~~~r----r~~~---l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p-~~~-~v~f~~~~~~~~~  432 (504)
T 2okj_A          362 QCGR----HVDI---FKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEP-EHT-NVCFWYIPQSLRG  432 (504)
T ss_dssp             CSSC----BCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCC-SSS-CEEEEECCGGGSS
T ss_pred             CCCC----CccH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCC-CeE-EEEEEEeCccccc
Confidence            1111    0122   344555666666778889999999999999999987 8887652112 233 344443 3211  


Q ss_pred             -------------CHHHHHHHHHhhCC-eEEccCCCCCCCcEEEEeec-ccCCHHHHHHHHHHHHHHHHhc
Q 015729          318 -------------NSSEIVRRAWQRYN-LSLGLGLNKVAGKVFRIGHL-GHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       318 -------------~~~~l~~~L~~~~~-i~v~~g~~~~~~~~~Ri~~~-~~~~~~di~~~~~~i~~~l~~~  373 (401)
                                   ...++.+.|.++ | +.+..+......+++|+++. ..+|++|+++++++|+++++++
T Consensus       433 ~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~  502 (504)
T 2okj_A          433 VPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL  502 (504)
T ss_dssp             CCCCHHHHHHHTTHHHHHHHHHHHH-TSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             cccchhhHHHHHHHHHHHHHHHHhC-CcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence                         034677888877 6 44443221111257999986 6789999999999999987653

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.96  E-value=2.3e-28  Score=227.37  Aligned_cols=301  Identities=12%  Similarity=0.049  Sum_probs=223.2

Q ss_pred             cccccCCC-cCChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhc---CCCCceEEecCChhHHHHHHHhccCCC
Q 015729           10 NHLFVPGP-VHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFK---TTSGTPFLIPTTGTGAWESALTNTLSP   83 (401)
Q Consensus        10 ~~~~~~~p-~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g---~~~~~~i~~~~g~t~a~~~~~~~~~~~   83 (401)
                      .++..+.+ .+.++.+++++.+....  ...+.. ....++++.++++++   .++ +++++++|+++|+..++.++   
T Consensus        22 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~lr~~la~~~~~~~~~~-~~v~~~~G~~~al~~~~~~~---   96 (335)
T 1uu1_A           22 TYLALNENPFPFPEDLVDEVFRRLNSDALRIYYD-SPDEELIEKILSYLDTDFLSK-NNVSVGNGADEIIYVMMLMF---   96 (335)
T ss_dssp             EEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCC-SSCHHHHHHHHHHHTCSSCCG-GGEEEESSHHHHHHHHHHHS---
T ss_pred             eECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-CchHHHHHHHHHHcCCCCCCH-HHEEEcCChHHHHHHHHHHh---
Confidence            45555544 56789999998886521  111111 136799999999999   554 45999999999999998877   


Q ss_pred             CCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHh
Q 015729           84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLL  163 (401)
Q Consensus        84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~  163 (401)
                      ||+|+++ ++|++..  ..++..|++++.++.+.++.+|++++     +    +++++++++|+||||.+.|.+++.+++
T Consensus        97 gd~Vl~~-p~y~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l-----~----~~~~v~l~~p~nptG~~~~~~~l~~l~  164 (335)
T 1uu1_A           97 DRSVFFP-PTYSCYR--IFAKAVGAKFLEVPLTKDLRIPEVNV-----G----EGDVVFIPNPNNPTGHVFEREEIERIL  164 (335)
T ss_dssp             SEEEECS-SSCHHHH--HHHHHHTCEEEECCCCTTSCCCCCCC-----C----TTEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             CCcEEEC-CCcHHHH--HHHHHcCCeEEEeccCCCCCCCHHHc-----C----CCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            8999999 9877654  55677899999999877667788776     2    468999999999999999999999999


Q ss_pred             hhcCCCcEEEEecccccCcc--eec-cCcccceEEEecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHH
Q 015729          164 DEYRHPALFLVDGVSSICAI--DFR-MDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYI  238 (401)
Q Consensus       164 ~~~~~~~~li~D~a~~~~~~--~~~-~~~~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (401)
                      +.  .| ++|+|++|+.+..  ..+ ....+.++++.|.+|+++ .+|  +|++++++++.+.+....            
T Consensus       165 ~~--~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~------------  228 (335)
T 1uu1_A          165 KT--GA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFS-LAAQRVGYVVASEKFIDAYNRVR------------  228 (335)
T ss_dssp             HT--TC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTT-CGGGCCEEEEECHHHHHHHHHHS------------
T ss_pred             Hh--CC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcC-CcccCeEEEEeCHHHHHHHHHhc------------
Confidence            99  68 8999999974221  122 233457899999999984 344  799999999877665321            


Q ss_pred             HHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCC
Q 015729          239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN  318 (401)
Q Consensus       239 ~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  318 (401)
                           .   .++++...++++.++++.  ..++++.++++.++++++.+.|++.|+++...     .+.++++.+++ .+
T Consensus       229 -----~---~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-----~~~~~~~~~~~-~~  292 (335)
T 1uu1_A          229 -----L---PFNVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMGYRITDS-----RGNFVFVFMEK-EE  292 (335)
T ss_dssp             -----C---TTCSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC-----CSSEEEEECCT-HH
T ss_pred             -----C---CCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCCcEEcCC-----CCeEEEEECCC-CC
Confidence                 1   124666666666666654  22467788889999999999998887765321     23467788854 45


Q ss_pred             HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          319 SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      ..++.+.|.++ ||.+.+     .++++|+++.   +++|+++++++|++
T Consensus       293 ~~~~~~~l~~~-gi~v~~-----~~~~iRis~~---~~~~i~~~~~~l~~  333 (335)
T 1uu1_A          293 KERLLEHLRTK-NVAVRS-----FREGVRITIG---KREENDMILRELEV  333 (335)
T ss_dssp             HHHHHHHHHHH-TEEEEE-----ETTEEEEECC---CHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHC-CEEEEE-----CCCeEEEEeC---CHHHHHHHHHHHHh
Confidence            67888988876 999987     2568999863   46889999998875

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.96  E-value=1.7e-27  Score=230.02  Aligned_cols=356  Identities=14%  Similarity=0.102  Sum_probs=245.2

Q ss_pred             cccccCCCcCChHHHHHHHccCcCCCC-----------CccHHHHHHHHH-HHHHHHhcCCCCceEEecCChhHHHHHHH
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNEDYR-----------SPAVPALTKTLL-EDIKKIFKTTSGTPFLIPTTGTGAWESAL   77 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~-----------~~~~~~~~~~l~-~~la~~~g~~~~~~i~~~~g~t~a~~~~~   77 (401)
                      ...+.+++.+.+++|++++.+.....+           +....+..+++. +.+++++|.+.  ..++++||++|+..++
T Consensus        47 ~i~l~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~--~~v~~~sGs~a~~~a~  124 (447)
T 3h7f_A           47 TLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEF--ANVQPHSGAQANAAVL  124 (447)
T ss_dssp             SEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHH
T ss_pred             ceeEecCCCCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCc--eEEEeCCHHHHHHHHH
Confidence            345677788889999999987553211           111222334555 99999999875  2344888999999999


Q ss_pred             hccCCCCCeEEEEcCCcchHH-HHH--HHHHcCCcEEEEeCC-CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc
Q 015729           78 TNTLSPGDRIISFLIGQFSLL-WID--QQQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        78 ~~~~~~gd~vl~~~~~~~~~~-~~~--~~~~~g~~~~~v~~~-~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~  153 (401)
                      .+++++||+|+++.++|.++. ...  .....+..++.++.+ .++.+|++++++++++   .++++++++.++|+++. 
T Consensus       125 ~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~~i~~~~~~~~~~~-  200 (447)
T 3h7f_A          125 HALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALE---FRPKVIIAGWSAYPRVL-  200 (447)
T ss_dssp             HHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHH---HCCSEEEEECSSCCSCC-
T ss_pred             HHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHh---cCCeEEEEcCCCCCCcc-
Confidence            999999999999999876621 100  112234556666665 3457899999999965   24688888888888776 


Q ss_pred             cchHHHHHHhhhcCCCcEEEEecccccCcc----eeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCc
Q 015729          154 NNLSKVRKLLDEYRHPALFLVDGVSSICAI----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR  229 (401)
Q Consensus       154 ~~l~~i~~l~~~~~~~~~li~D~a~~~~~~----~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~  229 (401)
                       ++++|.++|++  +|+++|+|++|..|..    ..+.. .++|++++|.||+++|+.| |++++++++.+.+....   
T Consensus       201 -~l~~i~~l~~~--~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~~g-G~i~~~~~~~~~l~~~~---  272 (447)
T 3h7f_A          201 -DFAAFRSIADE--VGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGGRS-GLIVGKQQYAKAINSAV---  272 (447)
T ss_dssp             -CHHHHHHHHHH--HTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCCSC-EEEEECGGGHHHHHHHH---
T ss_pred             -CHHHHHHHHHH--cCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCCCe-EEEEECHHHHHHHhhhc---
Confidence             99999999999  9999999999865421    11111 2579999999999977766 99999988766554210   


Q ss_pred             cccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-----CCccccCCCccC
Q 015729          230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-----GLKNCTQKEEWF  304 (401)
Q Consensus       230 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~  304 (401)
                                  .  .+..+++....++++.+++......+++...++..++++++.+.|.+.     |+++....   .
T Consensus       273 ------------~--~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~---~  335 (447)
T 3h7f_A          273 ------------F--PGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGG---T  335 (447)
T ss_dssp             ------------T--TTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGS---C
T ss_pred             ------------C--CcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCC---C
Confidence                        0  011334555556777777766555456788899999999999999887     88876521   1


Q ss_pred             CceeEEEEcC-CCCCHHHHHHHHHhhCCeEEc----cC--CCCCCCcEEEEeeccc----CCHHHHHHHHHHHHHHHHhc
Q 015729          305 SDTVTAVIVP-SHINSSEIVRRAWQRYNLSLG----LG--LNKVAGKVFRIGHLGH----LNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       305 ~~~~~~~~~~-~~~~~~~l~~~L~~~~~i~v~----~g--~~~~~~~~~Ri~~~~~----~~~~di~~~~~~i~~~l~~~  373 (401)
                      ...++++.+. .+.+...+.+.|. +.||.+.    ++  ..+..+..+|+++...    .+++|+++++++|++++++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~l~-~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~~  414 (447)
T 3h7f_A          336 DVHLVLVDLRDSPLDGQAAEDLLH-EVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALATG  414 (447)
T ss_dssp             SSSEEEEECTTSSCCHHHHHHHHH-HTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred             CCCEEEEEcCCCCCCHHHHHHHHH-HCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence            2235566663 3456666666665 4599988    55  3344456799987553    67999999999999999865


Q ss_pred             CCCCCcchHHHHHHHHHHccCCCCCC
Q 015729          374 GYPVKLGSGVAAASAYLQNNIPMIPS  399 (401)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (401)
                      ... + ...+...-.-|.++-|+.|.
T Consensus       415 ~~~-~-~~~~~~~v~~~~~~~~~~~~  438 (447)
T 3h7f_A          415 SSV-D-VSALKDRATRLARAFPLYDG  438 (447)
T ss_dssp             GGC-C-HHHHHHHHHHHHHHSCSSTT
T ss_pred             Cch-h-HHHHHHHHHHHHHhCCCCCC
Confidence            321 2 34566667777888888764

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.96  E-value=7.4e-29  Score=239.61  Aligned_cols=303  Identities=10%  Similarity=0.031  Sum_probs=208.8

Q ss_pred             HHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccCCCCC--------------eEEEE-cCCcchHHHH--
Q 015729           43 LTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGD--------------RIISF-LIGQFSLLWI--  100 (401)
Q Consensus        43 ~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd--------------~vl~~-~~~~~~~~~~--  100 (401)
                      ...++++.+++++    |.. .++++++|+|+++|++.++.+++++||              +|+++ .++|+++...  
T Consensus        84 g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~  163 (444)
T 3if2_A           84 GDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHV  163 (444)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCS
T ss_pred             CCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhccc
Confidence            3557777777776    322 334599999999999999999998888              78876 6776665410  


Q ss_pred             --HHHHHcCCcEEEEeCCC-C----CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCc
Q 015729          101 --DQQQRLNFNVDVVESDW-G----EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPA  170 (401)
Q Consensus       101 --~~~~~~g~~~~~v~~~~-~----~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~  170 (401)
                        ......|.+++.++.+. +    +.+|++++++++.+.+ ++++++++++++||||.++|   +++|.++|++  +|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~-~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~--~~~  240 (444)
T 3if2_A          164 EGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKE-GRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKR--YDI  240 (444)
T ss_dssp             SSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHT-TCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--TTC
T ss_pred             ccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcC-CCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHH--CCC
Confidence              02344577788888765 2    3689999998843211 46799999999999999998   7788899999  999


Q ss_pred             EEEEecccccCccee-----ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCC
Q 015729          171 LFLVDGVSSICAIDF-----RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGT  245 (401)
Q Consensus       171 ~li~D~a~~~~~~~~-----~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  245 (401)
                      ++|+|++|+.+....     .....+.+++++|.||++.++.++|+++.++++.+.+....            ...    
T Consensus       241 ~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~~------------~~~----  304 (444)
T 3if2_A          241 PLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSAMN------------AVV----  304 (444)
T ss_dssp             CEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHH------------HHH----
T ss_pred             EEEEECCCCCcccccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHHHHH------------Hhc----
Confidence            999999997432211     11224678999999997544456799999998877664320            000    


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHh-cHHH-HHHHHHHHHHHHHHHHHH-c-C--CccccCCCccCCceeEEEEcCC-CCC
Q 015729          246 FWPYTPSIQLLYGLRAALDLIFEE-GLEN-VIERHRRLGKATRLAVEA-W-G--LKNCTQKEEWFSDTVTAVIVPS-HIN  318 (401)
Q Consensus       246 ~~~~~~~~~~~~a~~~al~~~~~~-g~~~-~~~~~~~~~~~l~~~L~~-~-g--~~~~~~~~~~~~~~~~~~~~~~-~~~  318 (401)
                        .++++...+.++.+.++..... ...+ .++++.++.+.+.+.|.+ + +  +.+..+    ..+.++++.++. +.+
T Consensus       305 --~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~----~~g~~~~~~~~~~~~~  378 (444)
T 3if2_A          305 --NLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKP----EGAIFLWLWFKDLPIS  378 (444)
T ss_dssp             --HSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECC----CBSSEEEEEETTCSSC
T ss_pred             --cCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecC----CccEEEEEEcCCCCCC
Confidence              1123333333333333321110 1122 556677788888888876 3 3  333332    234577888876 678


Q ss_pred             HHHHHHHHHhhCCeEEccCCCCCC----------CcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          319 SSEIVRRAWQRYNLSLGLGLNKVA----------GKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~~~~----------~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ..++.+.|.++ ||.+.+|..+..          .+++||++..  +++++++++++|+++++++
T Consensus       379 ~~~l~~~l~~~-gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~~  440 (444)
T 3if2_A          379 TLDLYERLKAK-GTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVREL  440 (444)
T ss_dssp             HHHHHHHHHHT-TEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC-CeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHHH
Confidence            88999999765 999998854322          2579998876  9999999999999998754

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.96  E-value=8e-28  Score=228.55  Aligned_cols=332  Identities=14%  Similarity=0.137  Sum_probs=232.1

Q ss_pred             CcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCCCeEEEEcCCcc
Q 015729           17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQF   95 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~   95 (401)
                      |. .++++++++.+...... ........++++.+++++|.+   .+++++||++|+..++.++ +++||+|+++.++|+
T Consensus        16 p~-~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~   90 (393)
T 1mdo_A           16 PA-MGAEELAAVKTVLDSGW-ITTGPKNQELEAAFCRLTGNQ---YAVAVSSATAGMHIALMALGIGEGDEVITPSMTWV   90 (393)
T ss_dssp             CC-CCHHHHHHHHHHHHHTC-CSSSHHHHHHHHHHHHHHCCS---EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCH
T ss_pred             CC-CCHHHHHHHHHHHhcCC-cCCChHHHHHHHHHHHHhCCC---cEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccH
Confidence            44 55677888777543221 123467889999999999975   3899999999999999988 899999999999988


Q ss_pred             hHHHHHHHHHcCCcEEEEeCCCC-CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEE
Q 015729           96 SLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLV  174 (401)
Q Consensus        96 ~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~  174 (401)
                      +..  ..++..|++++.++.+++ +.+|++++++++++    ++++++++   +++|.+.++++|.++|++  +|+++|+
T Consensus        91 ~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~----~~~~v~~~---~~~G~~~~~~~i~~l~~~--~~~~li~  159 (393)
T 1mdo_A           91 STL--NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP----QTKAIIPV---HYAGAPADLDAIYALGER--YGIPVIE  159 (393)
T ss_dssp             HHH--HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT----TEEEECCB---CGGGCCCCHHHHHHHHHH--HTCCBCE
T ss_pred             hHH--HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC----CceEEEEe---CCCCCcCCHHHHHHHHHH--cCCeEEE
Confidence            764  456778999999998865 57899999999874    56888776   479999999999999999  9999999


Q ss_pred             ecccccCcceeccCccc-ceEEEecCC--CcccCCCcceEEEec-HHHHHHhccCCCCccccc-hHHH----HHHhhcCC
Q 015729          175 DGVSSICAIDFRMDEWG-IDVALTGSQ--KALSLPTGMGIVCAS-PKALEASKTAKSVRVFFD-WKDY----IKFYNLGT  245 (401)
Q Consensus       175 D~a~~~~~~~~~~~~~~-~di~~~s~~--K~l~g~~g~G~l~~~-~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~g~  245 (401)
                      |++|+.|... +....+ .|++++|+|  |+++++ ..|+++.+ +++.+++..........+ +..+    ...+..++
T Consensus       160 D~a~~~g~~~-~~~~~~~~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (393)
T 1mdo_A          160 DAAHATGTSY-KGRHIGARGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLA  237 (393)
T ss_dssp             ECTTCTTCEE-TTEETTSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESS
T ss_pred             ECccccCCeE-CCeecCCCCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccc
Confidence            9999976533 222345 899999988  999655 45888886 777776654322111100 0000    00111000


Q ss_pred             C-CCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCC--CccCCceeEEEEcCC---CCCH
Q 015729          246 F-WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK--EEWFSDTVTAVIVPS---HINS  319 (401)
Q Consensus       246 ~-~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--~~~~~~~~~~~~~~~---~~~~  319 (401)
                      . +....+...     +++......++++..++.+++.+++.+.|.++++++....  .....+.++++.+++   +.+.
T Consensus       238 ~g~~~~~~~~~-----~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  312 (393)
T 1mdo_A          238 PGYKYNLPDLN-----AAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITR  312 (393)
T ss_dssp             CCCBCCCCHHH-----HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCH
T ss_pred             cCccCCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEEEEecccccccCH
Confidence            0 001123221     1221112224667788888899999999988776554221  111234567888864   5678


Q ss_pred             HHHHHHHHhhCCeEEccCCCCC---------------------CCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          320 SEIVRRAWQRYNLSLGLGLNKV---------------------AGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       320 ~~l~~~L~~~~~i~v~~g~~~~---------------------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .++.+.|.++ ||.++++..+.                     ....+|+++...+|++|+++++++|+++++.
T Consensus       313 ~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~  385 (393)
T 1mdo_A          313 DALMASLKTK-GIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQ  385 (393)
T ss_dssp             HHHHHHHHHT-TBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhC-CCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence            8999999876 99998876431                     1237999988889999999999999998754

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.96  E-value=2.8e-28  Score=238.15  Aligned_cols=349  Identities=12%  Similarity=0.036  Sum_probs=237.0

Q ss_pred             cccccCCCcCChHHHHHHHccCcCC---CC--CccHHHHHHHHHHHHHHHhcCCCC--------ceEEecCChhHHHHHH
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNED---YR--SPAVPALTKTLLEDIKKIFKTTSG--------TPFLIPTTGTGAWESA   76 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~l~~~la~~~g~~~~--------~~i~~~~g~t~a~~~~   76 (401)
                      .+.+.+++...+..+.+++....+.   ++  ++....+..++++.+++++|.+..        ..+++++|||+|+..+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~a  155 (486)
T 1js3_A           76 FFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVA  155 (486)
T ss_dssp             BCSSSCCCCCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHH
T ss_pred             ceEeCCCCCCHHHHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHH
Confidence            4455555555555566666664322   11  233455666788888999998742        3588999999999888


Q ss_pred             HhccCC---C------CC--------e--EEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCC--
Q 015729           77 LTNTLS---P------GD--------R--IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA--  135 (401)
Q Consensus        77 ~~~~~~---~------gd--------~--vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~--  135 (401)
                      +.+...   +      ||        +  |+++.++|++..  ..++..|++++.++++.++.+|+++|++++++++.  
T Consensus       156 l~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~--~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g  233 (486)
T 1js3_A          156 LLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVE--RAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAG  233 (486)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHH--HHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHH--HHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCC
Confidence            755321   1      32        4  677888887653  66788899999999988889999999999986441  


Q ss_pred             CCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceec-cC-----cccceEEEecCCCcccCCCcc
Q 015729          136 HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR-MD-----EWGIDVALTGSQKALSLPTGM  209 (401)
Q Consensus       136 ~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~-~~-----~~~~di~~~s~~K~l~g~~g~  209 (401)
                      .++.++++++++|++|.+.|+++|.++|++  +|+++|+|++|+.+....+ ..     -.++|++++++||+++++.|+
T Consensus       234 ~~p~~vv~~~~~n~tG~~~~l~~I~~la~~--~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~  311 (486)
T 1js3_A          234 LIPFFVVATLGTTSCCSFDNLLEVGPICHE--EDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDC  311 (486)
T ss_dssp             CEEEEEEEEBSCTTTCCBCCHHHHHHHHHH--TTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSC
T ss_pred             CCceEEEEeCCCCCCCCCCCHHHHHHHHHH--cCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcce
Confidence            123588999999999999999999999999  9999999999987654321 11     136899999999999888899


Q ss_pred             eEEEecHHH--HHHhccCCCCccccchHHH-----HHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 015729          210 GIVCASPKA--LEASKTAKSVRVFFDWKDY-----IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLG  282 (401)
Q Consensus       210 G~l~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~  282 (401)
                      |+++++++.  .+.+.. ...  |......     ......+  ...+.. ....++.+++..+...++++..++..+++
T Consensus       312 G~l~~~~~~~l~~~~~~-~~~--yl~~~~~~~~~~~~~~~~~--~~~~rr-~~~~~~~~al~~~g~~g~~~~~~~~~~~a  385 (486)
T 1js3_A          312 SAMWVKRRTDLTGAFKL-DPV--YLKHSHQGSGLITDYRHWQ--LPLGRR-FRSLKMWFVFRMYGVKGLQAYIRKHVQLS  385 (486)
T ss_dssp             EEEEESCHHHHHGGGC---------------CCSCCCGGGSS--SCSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCHHHHHHHhcC-Cch--hhCCCcccccCCCCccccC--CCCCCc-hhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            999997653  233321 110  1000000     0000000  011111 12457777888777778899999999999


Q ss_pred             HHHHHHHHHc-CCccccCCCccCCceeEEEEcCCC-CCHHHHHHHHHhhCCeEE-ccCCCCCCCcEEEEeecc-cCCHHH
Q 015729          283 KATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSH-INSSEIVRRAWQRYNLSL-GLGLNKVAGKVFRIGHLG-HLNELQ  358 (401)
Q Consensus       283 ~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~~~~~i~v-~~g~~~~~~~~~Ri~~~~-~~~~~d  358 (401)
                      +++.+.|++. |+++..+.   .. .++.|.++.. ....++.+.|.++ |+.+ .++.. ....++|+++.. ..+++|
T Consensus       386 ~~l~~~L~~~~~~~~~~~~---~~-~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~~~lRi~~~~~~~t~~d  459 (486)
T 1js3_A          386 HEFEAFVLQDPRFEVCAEV---TL-GLVCFRLKGSDGLNEALLERINSA-RKIHLVPCRL-RGQFVLRFAICSRKVESGH  459 (486)
T ss_dssp             HHHHHHHHHCTTEEECSCC---CS-SEEEEEESSCHHHHHHHHHHHHHH-TSCBCEEEEE-TTEEEEEEECCCTTCCHHH
T ss_pred             HHHHHHHhcCCCeEEeCCC---ce-eEEEEEecChHHHHHHHHHHHHhc-CCEEEEEEEE-CCEEEEEEEeCCCCCCHHH
Confidence            9999999997 88876531   22 3566776421 0146788888877 5433 33221 124579998644 578999


Q ss_pred             HHHHHHHHHHHHHhcC
Q 015729          359 LLGCLAGVEMILKDVG  374 (401)
Q Consensus       359 i~~~~~~i~~~l~~~~  374 (401)
                      +++++++|+++++++.
T Consensus       460 i~~~~~~l~~~~~~~~  475 (486)
T 1js3_A          460 VRLAWEHIRGLAAELL  475 (486)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999987653

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.96  E-value=1.5e-28  Score=235.85  Aligned_cols=321  Identities=9%  Similarity=-0.002  Sum_probs=222.5

Q ss_pred             CChHHHHHHHccCc---C--CCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHH--HHHHhccCCC--------
Q 015729           19 HIPDQVIRAMNRNN---E--DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAW--ESALTNTLSP--------   83 (401)
Q Consensus        19 ~~~~~v~~a~~~~~---~--~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~--~~~~~~~~~~--------   83 (401)
                      +.++.+++++.+..   .  ....|.......++++.++++++.+++ ++++|+|+++++  ..++..+..+        
T Consensus        48 ~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~  126 (422)
T 3d6k_A           48 DLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPAD-LVVAQDGSSLNIMFDLISWSYTWGNNDSSRPW  126 (422)
T ss_dssp             HTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGG-GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCG
T ss_pred             CCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChh-HEEEecchHHHHHHHHHHHHhcCccccccccc
Confidence            55566777776531   1  112333334467999999999998754 499999999997  5555555544        


Q ss_pred             ----CCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEE-EEecCCCcccccchH-
Q 015729           84 ----GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAIC-IVHNETATGVTNNLS-  157 (401)
Q Consensus        84 ----gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~-~~~~~n~tG~~~~l~-  157 (401)
                          +|+|+++.|+|+++.  ..++..|++++.++.+.++ +|++++++.+++   .++++++ +++++||||.+++.+ 
T Consensus       127 ~~~d~~~Vl~~~p~y~~~~--~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~---~~~~~v~~~~~~~NPtG~~~~~~~  200 (422)
T 3d6k_A          127 SAEEKVKWLCPVPGYDRHF--TITEHFGFEMINVPMTDEG-PDMGVVRELVKD---PQVKGMWTVPVFGNPTGVTFSEQT  200 (422)
T ss_dssp             GGSSCCEEEEEESCCHHHH--HHHHHHTCEEEEEEEETTE-ECHHHHHHHHTS---TTEEEEEECCSSCTTTCCCCCHHH
T ss_pred             ccCCCCEEEEeCCccHHHH--HHHHHcCCEEEecCCCCCC-CCHHHHHHHHhc---CCCeEEEEcCCCCCCCCCCCCHHH
Confidence                347999999877664  5577789999999987664 899999999964   3578887 688999999999876 


Q ss_pred             --HHHHHhh-hcCCCcEEEEecccccCcc-----e-ecc-------CcccceEEEecCCCcccCCCcceEEEecHHHHHH
Q 015729          158 --KVRKLLD-EYRHPALFLVDGVSSICAI-----D-FRM-------DEWGIDVALTGSQKALSLPTGMGIVCASPKALEA  221 (401)
Q Consensus       158 --~i~~l~~-~~~~~~~li~D~a~~~~~~-----~-~~~-------~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~  221 (401)
                        +|.++|+ +  +|++||+|++|+.+.+     + ...       +..+.++++.|.+|++.++.++|++++++++.+.
T Consensus       201 l~~l~~~~~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~~~l~~~  278 (422)
T 3d6k_A          201 CRELAEMSTAA--PDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASSKENIEW  278 (422)
T ss_dssp             HHHHHHCCCSS--TTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECCHHHHHH
T ss_pred             HHHHHHHHhhc--cCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeCHHHHHH
Confidence              6777777 7  9999999999973111     0 111       2345689999999975434458999999988776


Q ss_pred             hccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHH--HhcHHHHHHHHHHHHHHHHHHHHH----cC-C
Q 015729          222 SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF--EEGLENVIERHRRLGKATRLAVEA----WG-L  294 (401)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~--~~g~~~~~~~~~~~~~~l~~~L~~----~g-~  294 (401)
                      +....             ..     +.++.+...+.++.++++...  ...+++.+++++++.+.+.+.|.+    .| +
T Consensus       279 l~~~~-------------~~-----~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~  340 (422)
T 3d6k_A          279 YASHA-------------NV-----RGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVA  340 (422)
T ss_dssp             HHHHH-------------HH-----HCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred             HHHHH-------------Hh-----hcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCce
Confidence            65320             00     012355555455555554211  123556677777788888888865    22 3


Q ss_pred             ccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccC-CCC-----CCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          295 KNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLG-LNK-----VAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g-~~~-----~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      .+..+    ..+.++++.++.. +..++.+.|.++ ||.+.++ ...     ...+++||++.. .+++++++++++|++
T Consensus       341 ~~~~p----~~g~~~~~~~~~~-~~~~~~~~l~~~-gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~  413 (422)
T 3d6k_A          341 KWTSP----TGGYFISVDVVPG-TASRVVELAKEA-GIALTGAGSSFPLHNDPNNENIRLAPSL-PPVAELEVAMDGFAT  413 (422)
T ss_dssp             EECCC----SBSSCEEEEESTT-CHHHHHHHHHHT-TEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHH
T ss_pred             EEeCC----CcceEEEEECCCC-CHHHHHHHHHHC-CeEEEcCccccCCCCCCCCCeEEEecCC-CCHHHHHHHHHHHHH
Confidence            43332    2345788888654 567787777655 9999984 322     124789998876 799999999999999


Q ss_pred             HHHhc
Q 015729          369 ILKDV  373 (401)
Q Consensus       369 ~l~~~  373 (401)
                      +++++
T Consensus       414 ~l~~~  418 (422)
T 3d6k_A          414 CVLMA  418 (422)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88754

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.96  E-value=1.7e-29  Score=238.56  Aligned_cols=331  Identities=11%  Similarity=0.039  Sum_probs=230.7

Q ss_pred             ccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCCCeEEE
Q 015729           11 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIIS   89 (401)
Q Consensus        11 ~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~   89 (401)
                      ..++.++..+++++++++.+...... +.......++++.+++++|.+   .+++++|||+|++.++.++ +++||+|++
T Consensus         6 ~~l~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~---~~i~~~sgt~al~~~l~~l~~~~gd~Vi~   81 (373)
T 3frk_A            6 ASFKPMHDEIEYEIKFKFEEIYKRNW-FILGDEDKKFEQEFADYCNVN---YCIGCGNGLDALHLILKGYDIGFGDEVIV   81 (373)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHTC-CSSSHHHHHHHHHHHHHHTSS---EEEEESCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             cCCCcccCCCCHHHHHHHHHHHHCCC-ccCCchHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHcCCCCcCEEEE
Confidence            34556666778888888877543222 234567889999999999986   3899999999999999888 899999999


Q ss_pred             EcCCcchHHHHHHHHHcCCcEEEEeCC-CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCC
Q 015729           90 FLIGQFSLLWIDQQQRLNFNVDVVESD-WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRH  168 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~  168 (401)
                      +.++|++..  ..++..|++++.++.+ .++.+|++++++++++    ++++++   ++||+|...|+++|.++|++  +
T Consensus        82 ~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~----~~~~v~---~~n~~G~~~~l~~i~~l~~~--~  150 (373)
T 3frk_A           82 PSNTFIATA--LAVSYTGAKPIFVEPDIRTYNIDPSLIESAITE----KTKAII---AVHLYGQPADMDEIKRIAKK--Y  150 (373)
T ss_dssp             ETTSCTHHH--HHHHHHSCEEEEECEETTTTEECGGGTGGGCCT----TEEEEE---EECCTTCCCCHHHHHHHHHH--H
T ss_pred             CCCCcHHHH--HHHHHcCCEEEEEeccccccCcCHHHHHHhcCC----CCeEEE---EECCCcCcccHHHHHHHHHH--c
Confidence            999988865  4467789999999987 4567899999998864    567777   56799999999999999999  9


Q ss_pred             CcEEEEecccccCcceeccCccc--ceEEEec--CCCcccCCCcceEEEecH-HHHHHhccCCCCccccchHHHHHHhhc
Q 015729          169 PALFLVDGVSSICAIDFRMDEWG--IDVALTG--SQKALSLPTGMGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNL  243 (401)
Q Consensus       169 ~~~li~D~a~~~~~~~~~~~~~~--~di~~~s--~~K~l~g~~g~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (401)
                      |+++|+|++|+.|.. ++....+  .|++++|  .+|++++....|+++.++ ++.+++...........+    .....
T Consensus       151 ~~~li~D~a~~~g~~-~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~  225 (373)
T 3frk_A          151 NLKLIEDAAQAHGSL-YKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEKKY----HHIYK  225 (373)
T ss_dssp             TCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSBTT----BCCSC
T ss_pred             CCEEEEECCcccCCE-ECCEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcccCC----ccccc
Confidence            999999999998765 4544445  6888888  669996523347877764 455444322110000000    00001


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCC-ccCCceeEEEEcCCCCCHHHH
Q 015729          244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKE-EWFSDTVTAVIVPSHINSSEI  322 (401)
Q Consensus       244 g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l  322 (401)
                      |.  .+..+     .+.+++......++++..++.+++.+++.+.|.++++.+..... ....+..+.+..+   +..++
T Consensus       226 g~--~~~~~-----~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l  295 (373)
T 3frk_A          226 GF--NSRLD-----ELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFVIRSE---KRDEL  295 (373)
T ss_dssp             CC--BCCCC-----HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEEEEES---SHHHH
T ss_pred             cc--cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceeeEEEEEEeC---CHHHH
Confidence            11  11122     33444444444567778888889999999888776633322111 1122223334432   67889


Q ss_pred             HHHHHhhCCeEEccCCC-CC----------------------CCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          323 VRRAWQRYNLSLGLGLN-KV----------------------AGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       323 ~~~L~~~~~i~v~~g~~-~~----------------------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .+.|.++ ||.+++++. +.                      ....+|+++...+|++|+|+++++|+++..+
T Consensus       296 ~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~  367 (373)
T 3frk_A          296 QKYLNNN-GIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE  367 (373)
T ss_dssp             HHHHHHT-TBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred             HHHHHHC-CCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence            9999877 999987652 10                      0156999999999999999999999887543

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.96  E-value=4.4e-28  Score=232.33  Aligned_cols=339  Identities=14%  Similarity=0.103  Sum_probs=230.5

Q ss_pred             CCcCChHHHHHHHccCcCC---C-CC--ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCCCeEE
Q 015729           16 GPVHIPDQVIRAMNRNNED---Y-RS--PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRII   88 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~---~-~~--~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl   88 (401)
                      ...++++++++++.+....   . +.  ....+...++++.+++++|.+.   .++++|||+|+..++.++ +++||+|+
T Consensus        10 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~---~i~~~~gt~al~~~~~~~~~~~gd~Vl   86 (418)
T 2c81_A           10 EWPQHSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVPY---CVPTTSGSTALMLALEALGIGEGDEVI   86 (418)
T ss_dssp             CSSCCCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCSE---EEEESCHHHHHHHHHHHTTCCTTCEEE
T ss_pred             CCCCCCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCCc---EEEeCCHHHHHHHHHHHcCCCCcCEEE
Confidence            3445567777777663211   1 11  1223457899999999999872   677888999999999888 89999999


Q ss_pred             EEcCCcchHHHHHHHHHcCCcEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcC
Q 015729           89 SFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYR  167 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~  167 (401)
                      ++.++|++..  ..++..|++++.++.+. ++.+|++++++++++    ++++|+++   ||+|...++++|.++|++  
T Consensus        87 ~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~v~~~---~~~G~~~~~~~i~~~~~~--  155 (418)
T 2c81_A           87 VPSLTWIATA--TAVLNVNALPVFVDVEADTYCIDPQLIKSAITD----KTKAIIPV---HLFGSMANMDEINEIAQE--  155 (418)
T ss_dssp             EESSSCTHHH--HHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCT----TEEEECCB---CCTTCCCCHHHHHHHHHH--
T ss_pred             ECCCccHhHH--HHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCC----CCeEEEEe---CCcCCcccHHHHHHHHHH--
Confidence            9999988775  45677899999999886 567899999998863    56887764   589999999999999999  


Q ss_pred             CCcEEEEecccccCcceeccC---cc-cceEEEecCCCcccCCCcceEEEec-HHHHHHhccCCCCcccc-chHH-HHHH
Q 015729          168 HPALFLVDGVSSICAIDFRMD---EW-GIDVALTGSQKALSLPTGMGIVCAS-PKALEASKTAKSVRVFF-DWKD-YIKF  240 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~~~~~~---~~-~~di~~~s~~K~l~g~~g~G~l~~~-~~~~~~~~~~~~~~~~~-~~~~-~~~~  240 (401)
                      +|++||+|++|+.+.. ++..   .. .+++.++|+||+++++ ..|+++.+ +++.+++.......... .+.. ....
T Consensus       156 ~~~~li~D~a~~~~~~-~~~~~~~~~~~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  233 (418)
T 2c81_A          156 HNLFVIEDCAQSHGSV-WNNQRAGTIGDIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHG  233 (418)
T ss_dssp             TTCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTT
T ss_pred             CCCEEEEECcccccCc-cCCEecccccceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHHHHhCccccccccccccc
Confidence            9999999999998763 2211   11 1455555669999764 56888884 67666554321110000 0000 0000


Q ss_pred             hh--cC--CCCCCC--CcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCC-C-ccCCceeEEE
Q 015729          241 YN--LG--TFWPYT--PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQK-E-EWFSDTVTAV  311 (401)
Q Consensus       241 ~~--~g--~~~~~~--~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~-~~~~~~~~~~  311 (401)
                      +.  .+  .....+  .+.     +.+++......++++..++.+++.+++.+.|.++ |+++.... . ....+.++.+
T Consensus       234 ~~~~~~~~~~~g~~~~~~~-----~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~  308 (418)
T 2c81_A          234 DMQLVKKGDIQGSNYCLSE-----FQSAILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVF  308 (418)
T ss_dssp             CBSEEECCSSCCCBCCCCH-----HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEE
T ss_pred             hhhccccccccCcCCCcCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEE
Confidence            00  00  000000  111     2233333333456778888888999999999887 77765322 2 1223345657


Q ss_pred             EcCC----CCCHHHHHHHHHhhCCeE---EccCCCCC---------------------------C---------CcEEEE
Q 015729          312 IVPS----HINSSEIVRRAWQRYNLS---LGLGLNKV---------------------------A---------GKVFRI  348 (401)
Q Consensus       312 ~~~~----~~~~~~l~~~L~~~~~i~---v~~g~~~~---------------------------~---------~~~~Ri  348 (401)
                      .+++    +.+..++.+.|.+++||.   +++++.+.                           .         .+.+||
T Consensus       309 ~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl  388 (418)
T 2c81_A          309 RFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVI  388 (418)
T ss_dssp             EECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEE
T ss_pred             EEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEe
Confidence            7764    568889999998766999   87765321                           0         147999


Q ss_pred             eecccC-CHHHHHHHHHHHHHHHHhcCC
Q 015729          349 GHLGHL-NELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       349 ~~~~~~-~~~di~~~~~~i~~~l~~~~~  375 (401)
                      ++...+ |++|+++++++|+++++++++
T Consensus       389 ~~~~~~gt~edi~~~~~~l~~~~~~~~~  416 (418)
T 2c81_A          389 HHAILLAEPSHLSLLVDAVAELARKFCV  416 (418)
T ss_dssp             EGGGGGSCHHHHHHHHHHHHHHHHTTC-
T ss_pred             cCCccCCCHHHHHHHHHHHHHHHHhhcc
Confidence            999999 999999999999999987643

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.96  E-value=1.7e-28  Score=233.89  Aligned_cols=324  Identities=14%  Similarity=0.057  Sum_probs=216.4

Q ss_pred             cCChHHHHHHHccCcC------CCCCccHHHHHHHHHHHHHHH--hc-CCCCceEEecCChhHHHHHHHhccCCCCCeEE
Q 015729           18 VHIPDQVIRAMNRNNE------DYRSPAVPALTKTLLEDIKKI--FK-TTSGTPFLIPTTGTGAWESALTNTLSPGDRII   88 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~------~~~~~~~~~~~~~l~~~la~~--~g-~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl   88 (401)
                      .+.++.+++++.+...      ....+.......++++.++++  .| .++ +++++++|+++++..++ .++++||+|+
T Consensus        45 ~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~-~~v~~~~G~~~al~~~~-~~~~~gd~Vl  122 (400)
T 3asa_A           45 QPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDA-KEIFISDGAKVDLFRLL-SFFGPNQTVA  122 (400)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCG-GGEEEESCHHHHHHHHH-HHHCSSCEEE
T ss_pred             CCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCH-HHEEEccChHHHHHHHH-HHcCCCCEEE
Confidence            3567777777766321      111232234467899999999  46 443 45999999999999864 5568999999


Q ss_pred             EEcCCcchHHHHHHHHHcCCc-EEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhh
Q 015729           89 SFLIGQFSLLWIDQQQRLNFN-VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLD  164 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~g~~-~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~  164 (401)
                      ++.++|++..  ..++..|++ ++.++.+.++.++++ +++ +     ++++++++++++||||.++|   +++|.++|+
T Consensus       123 ~~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~-l~~-~-----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~  193 (400)
T 3asa_A          123 IQDPSYPAYL--DIARLTGAKEIIALPCLQENAFFPE-FPE-D-----THIDILCLCSPNNPTGTVLNKDQLRAIVHYAI  193 (400)
T ss_dssp             EEESCCHHHH--HHHHHTTCSEEEEEECCGGGTTCCC-CCT-T-----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             ECCCCcHHHH--HHHHHcCCcceEecccchhcCcccC-hhh-c-----cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHH
Confidence            9999887754  456778998 999998754333322 221 1     35789999999999999997   556888899


Q ss_pred             hcCCCcEEEEecccccCc----ceeccCc----ccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchH
Q 015729          165 EYRHPALFLVDGVSSICA----IDFRMDE----WGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWK  235 (401)
Q Consensus       165 ~~~~~~~li~D~a~~~~~----~~~~~~~----~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~  235 (401)
                      +  +|+++|+|++|+...    .+.....    .+.++++.|.+|+++ ++.++|+++++++..+...        .+..
T Consensus       194 ~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~--------~~~~  263 (400)
T 3asa_A          194 E--HEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADG--------HFVI  263 (400)
T ss_dssp             H--TTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTS--------CBHH
T ss_pred             H--cCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhccchh--------hhHH
Confidence            9  999999999998321    1122222    235688999999984 3334799999887621100        0011


Q ss_pred             HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEE-cC
Q 015729          236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVI-VP  314 (401)
Q Consensus       236 ~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~  314 (401)
                      .........+  .++.+...+.++.++++.   ..+++.++++.++++++.+.|+++|+++..+.    .+.++++. +|
T Consensus       264 ~~~~~~~~~~--~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~~~~~~~~~~~  334 (400)
T 3asa_A          264 QDWERFLSTT--FNGASIPAQEAGVAGLSI---LPQLEAIHYYRENSDLLRKALLATGFEVFGGE----HAPYLWVKPTQ  334 (400)
T ss_dssp             HHHHHHHHHH--CCCCCHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHHHHHHTTCEEEECS----SSSEEEEECCC
T ss_pred             HHHHHHhccC--ccCCChHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHCCCeeeCCC----CceEEEEeccC
Confidence            1101000000  123555555555555543   24677888999999999999998887765432    23578888 87


Q ss_pred             CCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          315 SHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       315 ~~~~~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ++.+..++...|.+++||.+.+|..+  ..++++||++  ..+++++++++++|++++++.
T Consensus       335 ~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~--~~~~e~i~~~l~~l~~~~~~~  393 (400)
T 3asa_A          335 ANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSS--LGKREDILAACERLQMAPALQ  393 (400)
T ss_dssp             TTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEEC--CSCHHHHHHHHHHHHC-----
T ss_pred             CCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEe--eCCHHHHHHHHHHHHHHHHhh
Confidence            66666778888876669999988442  2356899984  358999999999999888653

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.96  E-value=2e-27  Score=227.65  Aligned_cols=330  Identities=16%  Similarity=0.136  Sum_probs=225.9

Q ss_pred             ccccCCCcCChHHHHHHHccCcCCCC--C----------ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729           11 HLFVPGPVHIPDQVIRAMNRNNEDYR--S----------PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus        11 ~~~~~~p~~~~~~v~~a~~~~~~~~~--~----------~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      ..+.++....++.|++++.+......  +          .........+++.+++++|.+..  .+++++|++|+..++.
T Consensus        33 ~~~~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~v~~~sGs~a~~~a~~  110 (420)
T 3gbx_A           33 IELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYA--NVQPHSGSQANFAVYT  110 (420)
T ss_dssp             EECCTTCCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEE--ECCCSSHHHHHHHHHH
T ss_pred             eeeeccCCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCc--eeEecCcHHHHHHHHH
Confidence            34455555579999999988652211  0          01123345567899999998653  2344566999999999


Q ss_pred             ccCCCCCeEEEEcCCcchHH-HHHH--HHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc
Q 015729           79 NTLSPGDRIISFLIGQFSLL-WIDQ--QQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN  155 (401)
Q Consensus        79 ~~~~~gd~vl~~~~~~~~~~-~~~~--~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~  155 (401)
                      +++++||+|++..+.|.++. ....  ....+...+.++.+.++.+|++++++++++.   +++++++++++|+  ...|
T Consensus       111 ~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~---~~~~v~~~~~~~~--~~~~  185 (420)
T 3gbx_A          111 ALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEH---KPKMIIGGFSAYS--GVVD  185 (420)
T ss_dssp             HHCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHH---CCSEEEECCTTCC--SCCC
T ss_pred             HhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhc---CCeEEEEecCccC--CccC
Confidence            99999999999999877643 1111  1223345556666767779999999999862   4689999887775  4789


Q ss_pred             hHHHHHHhhhcCCCcEEEEecccccCcc-----eeccCcccceEEEecCCCcccCCCcceEEEecH---HHHHHhccCCC
Q 015729          156 LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASP---KALEASKTAKS  227 (401)
Q Consensus       156 l~~i~~l~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~---~~~~~~~~~~~  227 (401)
                      +++|.++|++  +|+++|+|++|+.+..     +....  .+|++++|.||+++|+.| |+++.++   ++.+.+...  
T Consensus       186 l~~l~~l~~~--~~~~li~De~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~~~~~~--  258 (420)
T 3gbx_A          186 WAKMREIADS--IGAYLFVDMAHVAGLIAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GLILAKGGDEELYKKLNSA--  258 (420)
T ss_dssp             HHHHHHHHHH--TTCEEEEECTTTHHHHHTTSSCCSTT--TSSEEEEESSGGGCSCSC-EEEEESSCCHHHHHHHHHH--
T ss_pred             HHHHHHHHHH--cCCEEEEECCcchhceecccCCcccc--cCCEEEeecccCCCCCCc-eEEEEcCCcHHHHHHhhhh--
Confidence            9999999999  9999999999875533     22222  489999999999976766 9999987   655544321  


Q ss_pred             CccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCce
Q 015729          228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT  307 (401)
Q Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  307 (401)
                                   ...+  ..++++...++++..++......++++.+++..++++++.+.|.+.|+++....   ....
T Consensus       259 -------------~~~~--~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~  320 (420)
T 3gbx_A          259 -------------VFPS--AQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGG---TENH  320 (420)
T ss_dssp             -------------HC------CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSS
T ss_pred             -------------cCCC--CCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCC---CCCe
Confidence                         0001  123455666666666665544445678899999999999999998888776521   1234


Q ss_pred             eEEEEcCC-CCCHHHHHHHHHhhCCeEEccCC------CCCCCcEEEEeeccc----CCHHHHHHHHHHHHHHHHhc
Q 015729          308 VTAVIVPS-HINSSEIVRRAWQRYNLSLGLGL------NKVAGKVFRIGHLGH----LNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       308 ~~~~~~~~-~~~~~~l~~~L~~~~~i~v~~g~------~~~~~~~~Ri~~~~~----~~~~di~~~~~~i~~~l~~~  373 (401)
                      ++++.++. +.+...+.+.|.++ ||.+.+..      .+..+..+||++...    .+++++++++++|++++++.
T Consensus       321 ~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~  396 (420)
T 3gbx_A          321 LFLLDLVDKNLTGKEADAALGRA-NITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI  396 (420)
T ss_dssp             EEEEECGGGTCCHHHHHHHHHHT-TEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHC-CcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence            66677643 45677788888654 99988721      122345699987653    46899999999999999875

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.96  E-value=1e-27  Score=228.37  Aligned_cols=331  Identities=15%  Similarity=0.050  Sum_probs=230.4

Q ss_pred             cccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCCCeEEEE
Q 015729           12 LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISF   90 (401)
Q Consensus        12 ~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~   90 (401)
                      .+..+....++.+++++.+..... .+.......++++.+++++|.+   .+++++||++|+..++.++ +++||+|+++
T Consensus        34 d~~~~~~~~~~~v~~a~~~~~~~~-~y~~~~~~~~l~~~la~~~~~~---~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~  109 (399)
T 2oga_A           34 DLKAAYEELRAETDAAIARVLDSG-RYLLGPELEGFEAEFAAYCETD---HAVGVNSGMDALQLALRGLGIGPGDEVIVP  109 (399)
T ss_dssp             CHHHHHHHTHHHHHHHHHHHHHHT-CCSSSHHHHHHHHHHHHHTTSS---EEEEESCHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             ccCcCCCCCCHHHHHHHHHHHhcC-CCCCchhHHHHHHHHHHHHCCC---eEEEecCHHHHHHHHHHHhCCCCcCEEEEC
Confidence            444555555688888888754321 1222366789999999999886   3778888999999999888 8999999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCC
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP  169 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~  169 (401)
                      .++|++..  ..++..|++++.++.++ ++.+|++++++++++    ++++|+   ++||||.+.|+++|.++|++  +|
T Consensus       110 ~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~v~---~~n~tG~~~~l~~i~~l~~~--~~  178 (399)
T 2oga_A          110 SHTYIASW--LAVSATGATPVPVEPHEDHPTLDPLLVEKAITP----RTRALL---PVHLYGHPADMDALRELADR--HG  178 (399)
T ss_dssp             SSSCTHHH--HHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCT----TEEEEC---CBCGGGCCCCHHHHHHHHHH--HT
T ss_pred             CCccHHHH--HHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCC----CCeEEE---EeCCcCCccCHHHHHHHHHH--cC
Confidence            99888754  45677899999999876 467899999999874    567766   46799999999999999999  99


Q ss_pred             cEEEEecccccCcceeccCccc--ceEEEecC--CCcccCCCcceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcC
Q 015729          170 ALFLVDGVSSICAIDFRMDEWG--IDVALTGS--QKALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLG  244 (401)
Q Consensus       170 ~~li~D~a~~~~~~~~~~~~~~--~di~~~s~--~K~l~g~~g~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  244 (401)
                      +++|+|++|+.+... +....+  .|++++|.  +|+++++...|+++.+ +++.+++...........       +...
T Consensus       179 ~~li~Dea~~~g~~~-~~~~~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~~~-------~~~~  250 (399)
T 2oga_A          179 LHIVEDAAQAHGARY-RGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQK-------YSHE  250 (399)
T ss_dssp             CEECEECTTCTTCEE-TTEETTCTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCSST-------TCCC
T ss_pred             CEEEEECcccccCcc-CCeecccccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCcccc-------cccc
Confidence            999999999877532 322233  68999998  5998642245888876 777665543211110000       1100


Q ss_pred             -CCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHHH
Q 015729          245 -TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEI  322 (401)
Q Consensus       245 -~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  322 (401)
                       ..+.++.+...++++.++++.+     +...++..++.+++.+.|+++ |+++...... ....++.+.++ ..+..++
T Consensus       251 ~~g~~~~~~~~~~a~~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~~~~~~-~~~~~~l  323 (399)
T 2oga_A          251 TKGTNSRLDEMQAAVLRIRLAHL-----DSWNGRRSALAAEYLSGLAGLPGIGLPVTAPD-TDPVWHLFTVR-TERRDEL  323 (399)
T ss_dssp             SCCCBCCCCHHHHHHHHHHHHTH-----HHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTT-EECCCSSEEEE-CSSHHHH
T ss_pred             ccccCCCcCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhccCCCccccCCCCC-CcceeEEEEEE-CCCHHHH
Confidence             0012245565555555555533     446667778888899999886 7766432111 11111112331 2367889


Q ss_pred             HHHHHhhCCeEEccCCCCC-----------------------CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          323 VRRAWQRYNLSLGLGLNKV-----------------------AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       323 ~~~L~~~~~i~v~~g~~~~-----------------------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .+.|.++ ||.+++++...                       ..+.+||++...++++|+++++++|+++++++
T Consensus       324 ~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l  396 (399)
T 2oga_A          324 RSHLDAR-GIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV  396 (399)
T ss_dssp             HHHHHHT-TBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHC-CCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999876 99988764210                       02579999988899999999999999998764

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.96  E-value=6.7e-28  Score=232.08  Aligned_cols=316  Identities=13%  Similarity=0.099  Sum_probs=217.9

Q ss_pred             cCChHHHHHHHccCcC------CCCCccHHHHHHHHHHHHHHHh----cCCCCceEEecCChhHHHHHHHhccCCCCCeE
Q 015729           18 VHIPDQVIRAMNRNNE------DYRSPAVPALTKTLLEDIKKIF----KTTSGTPFLIPTTGTGAWESALTNTLSPGDRI   87 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~------~~~~~~~~~~~~~l~~~la~~~----g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~v   87 (401)
                      .+.++.|++++.+...      ....+.......++++.+++++    +.++ +++++++|+++++.. +.+++++||+|
T Consensus        68 ~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~-~~i~~t~G~~~al~~-l~~l~~~gd~V  145 (432)
T 3ei9_A           68 EPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGD-DDVFVSDGAKCDISR-LQVMFGSNVTI  145 (432)
T ss_dssp             SCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCG-GGEEEESCHHHHHHH-HHHHHCTTCCE
T ss_pred             CCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCc-ceEEECCChHHHHHH-HHHHcCCCCEE
Confidence            3566777777665322      1112322334567888888886    5554 459999999999987 46778999999


Q ss_pred             EEEcCCcchHHHHHHHHHcC------------CcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc
Q 015729           88 ISFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN  155 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~  155 (401)
                      ++..++|+++.  ..++..|            .+++.++++.++.++++ +++  .    ++++++++++|+||||.+.+
T Consensus       146 l~~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~--~----~~~~~v~l~~p~NPtG~~~~  216 (432)
T 3ei9_A          146 AVQDPSYPAYV--DSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPD-LST--V----GRTDIIFFCSPNNPTGAAAT  216 (432)
T ss_dssp             EEEESCCTHHH--HHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCC-GGG--C----CCCSEEEEESSCTTTCCCCC
T ss_pred             EEeCCCCHHHH--HHHHHcCCcccccccccccCceEEeccCcccCCcCC-hhh--C----CCCCEEEEeCCCCCCCCCCC
Confidence            99999988875  3334444            36788888754333222 221  1    46799999999999999986


Q ss_pred             ---hHHHHHHhhhcCCCcEEEEecccccCcce---ecc---C-cccceEEEecCCCccc-CCCcceEEEecHHH------
Q 015729          156 ---LSKVRKLLDEYRHPALFLVDGVSSICAID---FRM---D-EWGIDVALTGSQKALS-LPTGMGIVCASPKA------  218 (401)
Q Consensus       156 ---l~~i~~l~~~~~~~~~li~D~a~~~~~~~---~~~---~-~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~------  218 (401)
                         +++|.++|++  +|++||+|++|+.+...   ..+   . ..+.++++.|.+|+++ ++.++|+++++++.      
T Consensus       217 ~~~l~~l~~la~~--~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~  294 (432)
T 3ei9_A          217 REQLTQLVEFAKK--NGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGF  294 (432)
T ss_dssp             HHHHHHHHHHHHH--HTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSC
T ss_pred             HHHHHHHHHHHHH--cCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchH
Confidence               5567777999  99999999999854221   111   1 1356799999999995 34457999998875      


Q ss_pred             --HHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 015729          219 --LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKN  296 (401)
Q Consensus       219 --~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~  296 (401)
                        .+.+..                .....  .++++...+.++.+++.......+++.++++.++++++.+.|+++|+++
T Consensus       295 ~~~~~~~~----------------~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~  356 (432)
T 3ei9_A          295 PVAKDFNR----------------IICTC--FNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGYDV  356 (432)
T ss_dssp             BHHHHHHH----------------HHHHS--CCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHH----------------Hhccc--cCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCCcee
Confidence              222211                11111  2235555555555555322223467788999999999999999988877


Q ss_pred             ccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          297 CTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      ..+.    ...++++.++ +.+..++...|.+++||.+.+|..+  ...+++||++..  +++++++++++|++.-+
T Consensus       357 ~~~~----~~~~~~~~~~-~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~--~~e~l~~~l~rl~~~~~  426 (432)
T 3ei9_A          357 YGGK----NAPYVWVHFP-NQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFG--HRENILEACRRFKQLYK  426 (432)
T ss_dssp             EECS----SSSEEEEECT-TSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHT
T ss_pred             cCCC----cceEEEEECC-CCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecC--CHHHHHHHHHHHHHHhh
Confidence            6532    2357888886 5677888888887679999988543  235789998744  99999999999987654

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.96  E-value=7.3e-28  Score=226.79  Aligned_cols=325  Identities=13%  Similarity=0.054  Sum_probs=229.0

Q ss_pred             ccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCCCeEEEEc
Q 015729           13 FVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFL   91 (401)
Q Consensus        13 ~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~   91 (401)
                      ++.++.++++++.+++.+...... +.......++++.+++++|.+   .+++++|||+|++.++.++ +++||+|+++.
T Consensus         7 ~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~---~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~   82 (367)
T 3nyt_A            7 LKNQQARIKDKIDAGIQRVLRHGQ-YILGPEVTELEDRLADFVGAK---YCISCANGTDALQIVQMALGVGPGDEVITPG   82 (367)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCC-CSSCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHTTCCTTCEEEEES
T ss_pred             ccccccccCHHHHHHHHHHHhcCC-ccCChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHhCCCCcCEEEECC
Confidence            444566778888888877543222 223466889999999999986   3899999999999999888 89999999999


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCCCC-CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCc
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPA  170 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~  170 (401)
                      ++|++..  ..++..|++++.++.+++ +.+|+++++++++    +++++|+   ++|++|...++++|.++|++  +|+
T Consensus        83 ~~~~~~~--~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~----~~~~~v~---~~~~~G~~~~~~~i~~la~~--~~~  151 (367)
T 3nyt_A           83 FTYVATA--ETVALLGAKPVYVDIDPRTYNLDPQLLEAAIT----PRTKAII---PVSLYGQCADFDAINAIASK--YGI  151 (367)
T ss_dssp             SSCTHHH--HHHHHTTCEEEEECBCTTTCSBCGGGTGGGCC----TTEEEEC---CBCGGGCCCCHHHHHHHHHH--TTC
T ss_pred             CccHHHH--HHHHHcCCEEEEEecCCccCCcCHHHHHHhcC----cCCcEEE---eeCCccChhhHHHHHHHHHH--cCC
Confidence            9888765  446778999999999876 6889999999886    3567777   67899999999999999999  999


Q ss_pred             EEEEecccccCcceeccCcccc--eEEEec--CCCcccCCCcceEEEec-HHHHHHhccCCCCccccchHHHHHHhhc-C
Q 015729          171 LFLVDGVSSICAIDFRMDEWGI--DVALTG--SQKALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNL-G  244 (401)
Q Consensus       171 ~li~D~a~~~~~~~~~~~~~~~--di~~~s--~~K~l~g~~g~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g  244 (401)
                      ++|+|++|+.|.. ++....+.  |++++|  ++|++++....|+++.+ +++.+++..........       .+.. .
T Consensus       152 ~li~D~a~~~g~~-~~~~~~~~~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~~-------~~~~~~  223 (367)
T 3nyt_A          152 PVIEDAAQSFGAS-YKGKRSCNLSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQDR-------RYHHIR  223 (367)
T ss_dssp             CBEEECTTTTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEE-------TTEECS
T ss_pred             EEEEECccccCCe-ECCeeccCCCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCCc-------Cceeec
Confidence            9999999997754 23222233  888888  58999652225777774 66666554322111000       0000 0


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCc-cCCceeEEEEcCCCCCHHHHH
Q 015729          245 TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEE-WFSDTVTAVIVPSHINSSEIV  323 (401)
Q Consensus       245 ~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~  323 (401)
                      ..+....+....+.....++     .+++..++.+++.+++.+.|.++++.+...... ...+..+.+.++   +.+++.
T Consensus       224 ~g~~~~~~~~~aa~~~~~l~-----~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~  295 (367)
T 3nyt_A          224 VGVNSRLDTLQAAILLPKLE-----IFEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD---NRESVQ  295 (367)
T ss_dssp             CCCBCCCCHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS---SHHHHH
T ss_pred             cCcCCCccHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC---CHHHHH
Confidence            00123344433333333332     356677888889999999999887655432211 223344555553   578899


Q ss_pred             HHHHhhCCeEEccCCC-CC------C-------------CcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          324 RRAWQRYNLSLGLGLN-KV------A-------------GKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       324 ~~L~~~~~i~v~~g~~-~~------~-------------~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      +.|.++ ||.++.++. +.      .             ...+|++++..+|++|++++++.|+++
T Consensus       296 ~~L~~~-GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~  360 (367)
T 3nyt_A          296 ASLKAA-GVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL  360 (367)
T ss_dssp             HHHHHH-TCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred             HHHHHC-CCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence            999877 998887653 10      0             235999999999999999999999765

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.96  E-value=1.4e-27  Score=225.44  Aligned_cols=298  Identities=16%  Similarity=0.179  Sum_probs=212.9

Q ss_pred             ChHHHHHHHccCcC----CCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc---cC---CCC-CeEE
Q 015729           20 IPDQVIRAMNRNNE----DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN---TL---SPG-DRII   88 (401)
Q Consensus        20 ~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~---~~---~~g-d~vl   88 (401)
                      .++.+.+++.+...    ....+ ......++++.+++++|.+  +++++++|+++|+..++..   +.   ++| |+|+
T Consensus        45 ~~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~l~~~la~~~g~~--~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl  121 (375)
T 2eh6_A           45 AYPKLTEALKEQVEKLLHVSNLY-ENPWQEELAHKLVKHFWTE--GKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFI  121 (375)
T ss_dssp             SCHHHHHHHHHHHHHCSCCCTTB-CCHHHHHHHHHHHHTSSSC--EEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             CCHHHHHHHHHHHHhccccCccc-CCHHHHHHHHHHHhhcCCC--CeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEE
Confidence            56777777766431    11122 2345779999999999983  5699999999999998854   34   778 9999


Q ss_pred             EEcCCcchHHHHHHHHHcC-------Cc-----EEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc-
Q 015729           89 SFLIGQFSLLWIDQQQRLN-------FN-----VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-  155 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~g-------~~-----~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~-  155 (401)
                      +++++|++..... ....+       ..     +..++.     .|+++++++++    ++++++++++++||||.+.+ 
T Consensus       122 ~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~----~~~~~v~~~~~~~~tG~~~~~  191 (375)
T 2eh6_A          122 SFENSFHGRTYGS-LSATGQPKFHKGFEPLVPGFSYAKL-----NDIDSVYKLLD----EETAGIIIEVIQGEGGVNEAS  191 (375)
T ss_dssp             EEBTCCCCSSHHH-HHHCBCGGGTTTTCSCCSSEEEECT-----TCHHHHHTTCC----TTEEEEEECSEETTTTSEECC
T ss_pred             EECCCcCCCchhh-hhhcCCccccCCCCCCCCCceeCCC-----chHHHHHHHhc----CCeEEEEEeCccCCCCCcCCC
Confidence            9999877754211 12111       11     333332     38999998886    36799999999999999987 


Q ss_pred             ---hHHHHHHhhhcCCCcEEEEecccc-cCcce--eccCccc--ceEEEecCCCcccCCCcceEEEecHHHHHHhccCCC
Q 015729          156 ---LSKVRKLLDEYRHPALFLVDGVSS-ICAID--FRMDEWG--IDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS  227 (401)
Q Consensus       156 ---l~~i~~l~~~~~~~~~li~D~a~~-~~~~~--~~~~~~~--~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~  227 (401)
                         +++|.++|++  +|+++|+|++|+ ++...  ++....+  +|++++|  |+++++.++|++++++++.+.+.....
T Consensus       192 ~~~l~~i~~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~~~~~~~~~~~~~~  267 (375)
T 2eh6_A          192 EDFLSKLQEICKE--KDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALA--KGLGGGVPIGAILAREEVAQSFTPGSH  267 (375)
T ss_dssp             HHHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSCCEEEEEEHHHHTTCCTTSC
T ss_pred             HHHHHHHHHHHHH--hCCEEEEeccccCCCCCCcchhhhhcCCCCCEEEEc--ccccCCCCeEEEEEcHHHHhhhcCCCC
Confidence               9999999999  999999999998 44322  2333444  7888666  999877789999999987776654211


Q ss_pred             CccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCce
Q 015729          228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT  307 (401)
Q Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  307 (401)
                                      +.  .++.+...++++.++++...     +..++.+++++++.+.|++++.....     ..+.
T Consensus       268 ----------------~~--~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~~~~~~-----~~g~  319 (375)
T 2eh6_A          268 ----------------GS--TFGGNPLACRAGTVVVDEVE-----KLLPHVREVGNYFKEKLKELGKGKVK-----GRGL  319 (375)
T ss_dssp             ----------------CC--SSTTCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTSSEEE-----EETT
T ss_pred             ----------------CC--CCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCce-----EEEE
Confidence                            11  11234544455556665443     57788888999999999887543222     1235


Q ss_pred             eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       308 ~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      ++++.+++  +..++.+.|.++ ||.+.++    .++++||++....+++|+++++++|+++
T Consensus       320 ~~~~~~~~--~~~~~~~~l~~~-gi~~~~~----~~~~iRi~~~~~~~~~~i~~~~~~l~~~  374 (375)
T 2eh6_A          320 MLGLELER--ECKDYVLKALEK-GLLINCT----AGKVLRFLPPLIIQKEHIDRAISVLREI  374 (375)
T ss_dssp             EEEEECSS--CCHHHHHHHHHT-TEECEEE----TTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEEEcC--cHHHHHHHHHHC-CCEEecC----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            77788854  467888999865 9998865    2568999987778999999999999875

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.96  E-value=1.9e-28  Score=234.68  Aligned_cols=296  Identities=10%  Similarity=0.022  Sum_probs=200.0

Q ss_pred             HHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccCCCCC-----eEEEE-cCCcchHHHHH-HH-H--Hc
Q 015729           42 ALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGD-----RIISF-LIGQFSLLWID-QQ-Q--RL  106 (401)
Q Consensus        42 ~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd-----~vl~~-~~~~~~~~~~~-~~-~--~~  106 (401)
                      ....++++.+++++    |.. .++++++|+|+++|++.++.+++++||     +|+++ .++|+++.... .. .  ..
T Consensus        75 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~  154 (417)
T 3g7q_A           75 QGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSA  154 (417)
T ss_dssp             TSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEEC
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccc
Confidence            34567777777776    322 335599999999999999999999987     88887 78776654111 01 1  12


Q ss_pred             CCcEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEEEEecccccCc
Q 015729          107 NFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICA  182 (401)
Q Consensus       107 g~~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~~~  182 (401)
                      +..+..++.+. ++.+|+++++  ++    ++++++++++++||||.+++   +++|.++|++  +|+++|+|++|+.+.
T Consensus       155 ~~~~~~~~~~~~~~~~d~~~l~--~~----~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~--~~~~li~De~~~~~~  226 (417)
T 3g7q_A          155 RPNIELLPEGQFKYHVDFEHLH--IG----EETGMICVSRPTNPTGNVITDEELMKLDRLANQ--HNIPLVIDNAYGVPF  226 (417)
T ss_dssp             CCEEEEEGGGEEEEECCGGGCC--CC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--TTCCEEEECTTCTTT
T ss_pred             cCcccccCCcccccccCHHHhc--cc----cCceEEEECCCCCCCCCccCHHHHHHHHHHHHH--cCCEEEEeCCCcccc
Confidence            23344443321 2357898887  43    46799999999999999998   7888999999  999999999987432


Q ss_pred             cee-----ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHH
Q 015729          183 IDF-----RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLY  257 (401)
Q Consensus       183 ~~~-----~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  257 (401)
                      ...     .....+.++++.|.+|+..++.++|+++.++++.+.+....             ...     ..+++.....
T Consensus       227 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~-------------~~~-----~~~~~~~~~~  288 (417)
T 3g7q_A          227 PGIIFSEARPLWNPNIILCMSLSKLGLPGSRCGIIIANDKTITAIANMN-------------GII-----SLAPGGMGPA  288 (417)
T ss_dssp             TCCBCSCCCCCCCTTEEEEEESGGGTCTTSCCEEEECCHHHHHHHHHHH-------------HHH-----CCCCCSHHHH
T ss_pred             ccccccccccCCCCCEEEEEechhccCCCcceEEEEeCHHHHHHHHHhh-------------cce-----eeCCCcHHHH
Confidence            111     11224678999999995443445899999999877665321             000     1123343333


Q ss_pred             HHHHHHHHHHHhcH----HH-HHHHHHHHHHHHHHHHHH-c---CCccccCCCccCCceeEEEEcCC-CCCHHHHHHHHH
Q 015729          258 GLRAALDLIFEEGL----EN-VIERHRRLGKATRLAVEA-W---GLKNCTQKEEWFSDTVTAVIVPS-HINSSEIVRRAW  327 (401)
Q Consensus       258 a~~~al~~~~~~g~----~~-~~~~~~~~~~~l~~~L~~-~---g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~  327 (401)
                      ++.+.++   ...+    .+ .++++.++.+.+.+.|.+ +   ++.+..+    ..+.++++.++. +.+..++.+.|.
T Consensus       289 ~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~l~~~l~  361 (417)
T 3g7q_A          289 MMCEMIK---RNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKP----EGAIFLWLWFKDLPITTELLYQRLK  361 (417)
T ss_dssp             HHHHHHH---TTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECC----CBSSEEEEECTTCSSCHHHHHHHHH
T ss_pred             HHHHHHc---CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCC----CcceEEEEEcCCCCCCHHHHHHHHH
Confidence            3333333   2222    22 556677888888888877 3   3554433    244678888876 578889999996


Q ss_pred             hhCCeEEccCCCCCC---------CcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          328 QRYNLSLGLGLNKVA---------GKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       328 ~~~~i~v~~g~~~~~---------~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ++ ||.+.+|..+..         .+++||++..  +++++++++++|+++++++
T Consensus       362 ~~-gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~~  413 (417)
T 3g7q_A          362 AR-GVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPDKIEAGVKILAEEIERA  413 (417)
T ss_dssp             HT-TEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHHHHHHHHHHHHHHHHHH
T ss_pred             HC-CEEEECchhhCCCCccccccCCCeEEEEecC--CHHHHHHHHHHHHHHHHHH
Confidence            55 999998854321         4689998764  9999999999999998753

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.96  E-value=1.3e-26  Score=222.44  Aligned_cols=333  Identities=13%  Similarity=0.093  Sum_probs=222.7

Q ss_pred             cccccCCCcCChHHHHHHHccCcCCCC--Cc------cHH----HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNEDYR--SP------AVP----ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL   77 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~--~~------~~~----~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~   77 (401)
                      .+.+.+++.+.++++++++.+......  ++      ...    ......++.+++++|.+..  .++++||++|+..++
T Consensus        34 ~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~v~~~~Gs~a~~~al  111 (425)
T 3ecd_A           34 QVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHA--NVQPHSGAQANGAVM  111 (425)
T ss_dssp             SEECCTTCCCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEE--ECCCSSHHHHHHHHH
T ss_pred             ceeeecccCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCc--eeecCchHHHHHHHH
Confidence            456677777779999999998653211  10      000    1233345778899988652  356889999999999


Q ss_pred             hccCCCCCeEEEEcCCcchHH-HHHHHHHcCC--cEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc
Q 015729           78 TNTLSPGDRIISFLIGQFSLL-WIDQQQRLNF--NVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        78 ~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~--~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~  153 (401)
                      .+++++||+|++..++|++.. ........|.  +++.++.+. ++.+|++++++++++   +++++|++++++|  |..
T Consensus       112 ~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~~v~~~~~~~--~~~  186 (425)
T 3ecd_A          112 LALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQ---HKPSLIIAGFSAY--PRK  186 (425)
T ss_dssp             HHHCCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHH---HCCSEEEEECSCC--CSC
T ss_pred             HHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhh---cCCcEEEEccccC--CCc
Confidence            888999999999999887732 2222223344  555666553 367899999999974   2568999987777  567


Q ss_pred             cchHHHHHHhhhcCCCcEEEEecccccCcceec--cC-cccceEEEecCCCcccCCCcceEEEec-HHHHHHhccCCCCc
Q 015729          154 NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR--MD-EWGIDVALTGSQKALSLPTGMGIVCAS-PKALEASKTAKSVR  229 (401)
Q Consensus       154 ~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~--~~-~~~~di~~~s~~K~l~g~~g~G~l~~~-~~~~~~~~~~~~~~  229 (401)
                      .++++|.++|++  +|++||+|++|+.+....+  .. ...+|++++|.||+++|+. .|+++.+ +.+.+.+....   
T Consensus       187 ~~l~~i~~l~~~--~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~-~g~~~~~~~~~~~~~~~~~---  260 (425)
T 3ecd_A          187 LDFARFRAIADS--VGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPR-GGFVLTNDEEIAKKINSAV---  260 (425)
T ss_dssp             CCHHHHHHHHHH--HTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCCCS-CEEEEESCHHHHHHHHHHH---
T ss_pred             CCHHHHHHHHHH--cCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccCCCC-cEEEEeCCHHHHHHHHhhh---
Confidence            899999999999  9999999999865533111  00 1137899999999996665 5999988 45544443210   


Q ss_pred             cccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeE
Q 015729          230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVT  309 (401)
Q Consensus       230 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~  309 (401)
                                  ..+  +.++++...++++..++......+++...++..++.+++.+.|.+.|+++..+.   ....++
T Consensus       261 ------------~~~--~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~  323 (425)
T 3ecd_A          261 ------------FPG--LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGG---TDNHLL  323 (425)
T ss_dssp             ------------C-------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSSEE
T ss_pred             ------------Ccc--ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCeeccCC---CCceEE
Confidence                        001  122455656666666666554445778899999999999999999888776532   123467


Q ss_pred             EEEcCC-CCCHHHHHHHHHhhCCeEEccCCC------CCCCcEEEEeecc----cCCHHHHHHHHHHHHHHHHhc
Q 015729          310 AVIVPS-HINSSEIVRRAWQRYNLSLGLGLN------KVAGKVFRIGHLG----HLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       310 ~~~~~~-~~~~~~l~~~L~~~~~i~v~~g~~------~~~~~~~Ri~~~~----~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ++.++. +.+...+.+.|.++ ||.+.++..      ......+|+++..    .++++++++++++|++++++.
T Consensus       324 ~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~  397 (425)
T 3ecd_A          324 LVDLRPKGLKGAQVEQALERA-GITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL  397 (425)
T ss_dssp             EEECGGGTCCHHHHHHHHHHT-TEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHc-CCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence            777743 45677888888655 999984321      2234579998543    345999999999999999765

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.96  E-value=7.7e-28  Score=228.95  Aligned_cols=323  Identities=11%  Similarity=0.003  Sum_probs=219.6

Q ss_pred             CcccccCCCcCChHHHHHHHcc-CcCC--CCCccHHHHHHHHHHHHHHHhcCC-----CCc--eEEecCChhHHHHHHH-
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNR-NNED--YRSPAVPALTKTLLEDIKKIFKTT-----SGT--PFLIPTTGTGAWESAL-   77 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~-~~~~--~~~~~~~~~~~~l~~~la~~~g~~-----~~~--~i~~~~g~t~a~~~~~-   77 (401)
                      +.|++..++.++++.+++++.+ ....  ...+.......++++.++++++..     .++  ++++++|+++|+..++ 
T Consensus        34 g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~  113 (397)
T 3fsl_A           34 GLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGAD  113 (397)
T ss_dssp             CCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHH
T ss_pred             eEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHH
Confidence            3344455677777999998887 4332  112222334568888888888652     234  6999999999999984 


Q ss_pred             -hccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC--CCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccccc
Q 015729           78 -TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES--DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN  154 (401)
Q Consensus        78 -~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~  154 (401)
                       .+++++||+|+++.++|+++.  ..++..|++++.++.  +.++.+|++++++.+++.. .+++++++++++||||.++
T Consensus       114 ~~~~~~~gd~vl~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~v~~~~p~nptG~~~  190 (397)
T 3fsl_A          114 FLKRYFPESGVWVSDPTWENHV--AIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQ-AGSIVLLHPCCHNPTGADL  190 (397)
T ss_dssp             HHHHHCTTCCEEEESSCCHHHH--HHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCC-TTCEEEECSSSCTTTCCCC
T ss_pred             HHHhcCCCCeEEEeCCCchhHH--HHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCC-CCCEEEEeCCCCCCCCcCC
Confidence             456799999999999887754  567788999999998  4466789999999998532 3568889999999999997


Q ss_pred             c---hHHHHHHhhhcCCCcEEEEecccccCcce-----e---cc-CcccceEEEecCCCcccCCCc--ceEEEe---cHH
Q 015729          155 N---LSKVRKLLDEYRHPALFLVDGVSSICAID-----F---RM-DEWGIDVALTGSQKALSLPTG--MGIVCA---SPK  217 (401)
Q Consensus       155 ~---l~~i~~l~~~~~~~~~li~D~a~~~~~~~-----~---~~-~~~~~di~~~s~~K~l~g~~g--~G~l~~---~~~  217 (401)
                      +   +++|.++|++  +|+++|+|++|+.+...     .   .. ...+.++++.|.+|.++ ++|  +|++++   +++
T Consensus       191 ~~~~l~~l~~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~riG~~~~~~~~~~  267 (397)
T 3fsl_A          191 TNDQWDAVIEILKA--RELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFS-LYGERVGGLSVMCEDAE  267 (397)
T ss_dssp             CHHHHHHHHHHHHH--TTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT-CGGGCCEEEEEECSSHH
T ss_pred             CHHHHHHHHHHHHh--CCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEeccccccc-CcCCCeeEEEEecCCHH
Confidence            6   4588899999  99999999998755432     0   11 12346788999999984 444  688864   455


Q ss_pred             HHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHH-----HHhcHHHHHHHHHHHHHHHHHHHHHc
Q 015729          218 ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI-----FEEGLENVIERHRRLGKATRLAVEAW  292 (401)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~-----~~~g~~~~~~~~~~~~~~l~~~L~~~  292 (401)
                      .++++...            .......+  ..+++.....++.+++...     ....+++.+++++++++++.+.|++.
T Consensus       268 ~~~~~~~~------------~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  333 (397)
T 3fsl_A          268 AAGRVLGQ------------LKATVRRN--YSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTE  333 (397)
T ss_dssp             HHHHHHHH------------HHHHHHTT--TSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH------------HHHHHHhc--cCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            54433210            01110011  1223433333333333311     12346778889999999999999986


Q ss_pred             ----CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          293 ----GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       293 ----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                          |+.+..+    ..+.++++.+    +...+.+.|. ++||.+.+|.        ||++. ..+++++++++++|++
T Consensus       334 ~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~l~-~~gi~v~~g~--------Ris~~-~~~~~~i~~~~~~l~~  395 (397)
T 3fsl_A          334 MPERNFDYLLN----QRGMFSYTGL----SAAQVDRLRE-EFGVYLIASG--------RMCVA-GLNTANVQRVAKAFAA  395 (397)
T ss_dssp             CTTSCCTHHHH----CCSSEEECCC----CHHHHHHHHH-TTCEECCTTC--------EEEGG-GCCTTTHHHHHHHHHH
T ss_pred             CCCCCceeecC----CceEEEecCC----CHHHHHHHHH-hCCEEECCCC--------eEEEE-ecCHhhHHHHHHHHHh
Confidence                5665543    2334555444    4555655565 4599998652        88764 4677889999999987


Q ss_pred             H
Q 015729          369 I  369 (401)
Q Consensus       369 ~  369 (401)
                      +
T Consensus       396 ~  396 (397)
T 3fsl_A          396 V  396 (397)
T ss_dssp             H
T ss_pred             h
Confidence            5

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.96  E-value=2.7e-28  Score=230.13  Aligned_cols=316  Identities=14%  Similarity=0.034  Sum_probs=211.4

Q ss_pred             cccccC--CCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeE
Q 015729           10 NHLFVP--GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRI   87 (401)
Q Consensus        10 ~~~~~~--~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~v   87 (401)
                      .|.+..  ++.++++++++++..    +..  +.....++++.+++++|.++++++++++||++|+..++.++  +||+|
T Consensus        30 v~~~~~~~~~~~~~~~v~~a~~~----~~~--~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~--~gd~V  101 (374)
T 2aeu_A           30 LYDLSGLSGGFLIDEKDKALLNT----YIG--SSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL--KPKKV  101 (374)
T ss_dssp             CEECSSCCCCCCCCHHHHHHHTS----TTH--HHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH--CCSEE
T ss_pred             eeeecccCCCCCCCHHHHHHHHH----hcC--chHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC--CCCEE
Confidence            444443  589999999999972    211  23344677777888899854355899999999999998876  99999


Q ss_pred             EEEcCCcchHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceE-EEEEecCCCcc-cccchHHHHHHhh
Q 015729           88 ISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKA-ICIVHNETATG-VTNNLSKVRKLLD  164 (401)
Q Consensus        88 l~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~-i~~~~~~n~tG-~~~~l~~i~~l~~  164 (401)
                      +++.++|+++. +...++..|++++.+       .|+++++++ +    +++++ +++++++|||| ...++++|.++|+
T Consensus       102 l~~~~~y~~~~~~~~~~~~~g~~~~~v-------~d~~~l~~~-~----~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~  169 (374)
T 2aeu_A          102 IHYLPELPGHPSIERSCKIVNAKYFES-------DKVGEILNK-I----DKDTLVIITGSTMDLKVIELENFKKVINTAK  169 (374)
T ss_dssp             EEECSSSSCCTHHHHHHHHTTCEEEEE-------SCHHHHHTT-C----CTTEEEEEECBCTTSCBCCHHHHHHHHHHHH
T ss_pred             EEecCCCCccHHHHHHHHHcCcEEEEe-------CCHHHHHhc-C----CCccEEEEEccCCCCCCCCcccHHHHHHHHH
Confidence            99999766543 223677789998888       278998887 3    46799 99999999999 8889999999999


Q ss_pred             hcCCCcEEEEecccccCcc-ee-c--cCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHH
Q 015729          165 EYRHPALFLVDGVSSICAI-DF-R--MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF  240 (401)
Q Consensus       165 ~~~~~~~li~D~a~~~~~~-~~-~--~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
                      +  +|+++|+|++|+.+.. +. .  ....++|++++|.||+++| .++|++++++++++.+....             .
T Consensus       170 ~--~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g-~~~G~~~~~~~~~~~l~~~~-------------~  233 (374)
T 2aeu_A          170 N--KEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG-PRGGLLAGKKELVDKIYIEG-------------T  233 (374)
T ss_dssp             H--HTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS-CSCEEEEEEHHHHHHHHHHH-------------H
T ss_pred             H--cCCEEEEECCcccccccccccCCccccCCcEEEecCcccccC-cceEEEEECHHHHHHHHHhh-------------c
Confidence            9  9999999999876531 11 1  1234689999999999865 57899999999877665320             0


Q ss_pred             hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH----HHHHHH----c----CCccccCCCccCCcee
Q 015729          241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKAT----RLAVEA----W----GLKNCTQKEEWFSDTV  308 (401)
Q Consensus       241 ~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l----~~~L~~----~----g~~~~~~~~~~~~~~~  308 (401)
                           .+..+++...++++.++++.+..    +..++..++.+.+    ++.|.+    +    |+.+...    ..+.+
T Consensus       234 -----~~~~~~~~~~~~a~~~al~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~----~~g~~  300 (374)
T 2aeu_A          234 -----KFGLEAQPPLLAGIYRALKNFNL----ERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERT----PTGFV  300 (374)
T ss_dssp             -----TTTCBCCHHHHHHHHHHHHHCCH----HHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEEC----SSEEE
T ss_pred             -----cccCCCCHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeC----CceEE
Confidence                 11224666666666677665321    1233334444444    344443    1    2333221    12223


Q ss_pred             EE-EEcCCCCC---HHHHHHHHHhhCCeEEccCCC-CCCCcEEEEeecc-cCCHHHHHHHHHHHHHHHHhcC
Q 015729          309 TA-VIVPSHIN---SSEIVRRAWQRYNLSLGLGLN-KVAGKVFRIGHLG-HLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       309 ~~-~~~~~~~~---~~~l~~~L~~~~~i~v~~g~~-~~~~~~~Ri~~~~-~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      ++ ...+...+   ..+++..+.+++||.+.+|.. +..++++||++.. ..+++++++++++++++++++.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~  372 (374)
T 2aeu_A          301 IKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF  372 (374)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred             EEeecccccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence            32 22321101   112555555555999998854 2335689998754 3344569999999999988753

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.96  E-value=3.9e-27  Score=223.80  Aligned_cols=304  Identities=15%  Similarity=0.094  Sum_probs=220.1

Q ss_pred             ChHHHHHHHccCcCC--CC-CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCC----------CCCe
Q 015729           20 IPDQVIRAMNRNNED--YR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS----------PGDR   86 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~----------~gd~   86 (401)
                      .+|.+.+++.+....  +. .....+...++++.+++++|.   +.+++++||++|++.++..+..          .+|+
T Consensus        53 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~---~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~  129 (392)
T 3ruy_A           53 RHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTNK---EMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAE  129 (392)
T ss_dssp             TCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCE
T ss_pred             CCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcCC---CEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcE
Confidence            467777777764322  11 112345678999999999983   3499999999999998876443          3679


Q ss_pred             EEEEcCCcchHHHHHHHHHcC------------CcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccccc
Q 015729           87 IISFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN  154 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~  154 (401)
                      |++..++|++........ .+            .++..++.+     |+++++++++    +++++|++++++||||.+.
T Consensus       130 vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~----~~~~~v~~~~~~nptG~~~  199 (392)
T 3ruy_A          130 IIVCEDNFHGRTMGAVSM-SSNEEYKRGFGPMLPGIIVIPYG-----DLEALKAAIT----PNTAAFILEPIQGEAGINI  199 (392)
T ss_dssp             EEEETTCCCCSSHHHHHT-CSCTTTTTTCCSCCSSEEEECTT-----CHHHHHHHCC----TTEEEEEECSSBSTTTSBC
T ss_pred             EEEEcCCcCCCCHhhhhc-cCChhhccccCCCCCCCeeeCcc-----cHHHHHHHhc----cCeEEEEEeCccCCCCCcc
Confidence            999999888765322111 11            124444432     7999999987    4679999999999999999


Q ss_pred             c----hHHHHHHhhhcCCCcEEEEecccc-cCc----ceeccCcccceEEEecCCCcccCC-CcceEEEecHHHHHHhcc
Q 015729          155 N----LSKVRKLLDEYRHPALFLVDGVSS-ICA----IDFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKT  224 (401)
Q Consensus       155 ~----l~~i~~l~~~~~~~~~li~D~a~~-~~~----~~~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~  224 (401)
                      |    +++|.++|++  +|+++|+|++|+ ++.    ...+.....+|++++|  |+++|+ .++|++++++++.+.+..
T Consensus       200 ~~~~~l~~i~~l~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~S--K~l~gG~~~~G~~~~~~~~~~~~~~  275 (392)
T 3ruy_A          200 PPAGFLKEALEVCKK--ENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILG--KALGGGVFPISCAAANRDILGVFEP  275 (392)
T ss_dssp             CCTTHHHHHHHHHHT--TTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTTSCCEEEEECHHHHTTCCT
T ss_pred             CCHHHHHHHHHHHHH--cCCEEEEeechhCCCccccchhhhccCCCCCEEEEc--hhhhCChhhhEEEEECHHHHhhhcc
Confidence            8    9999999999  999999999996 221    1122223346888775  988764 558999999998776654


Q ss_pred             CCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccC
Q 015729          225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWF  304 (401)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~  304 (401)
                      ...                  ...++.+...++++.++++.+..   ++..++++++++++.+.|++++........  .
T Consensus       276 ~~~------------------~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~  332 (392)
T 3ruy_A          276 GSH------------------GSTFGGNPLACAVSIAALEVLEE---EKLTERSLQLGEKLVGQLKEIDNPMITEVR--G  332 (392)
T ss_dssp             TSS------------------CCSSTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTCCCTTEEEEE--E
T ss_pred             CCc------------------CCCCCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHhcCCCceEEE--e
Confidence            311                  11345777777888888887654   457888899999999999887543322111  1


Q ss_pred             CceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          305 SDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       305 ~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      .+.++++.++.  +..++.+.|.++ ||.+.++.    ++++|+++....+++|+++++++|++++
T Consensus       333 ~g~~~~~~~~~--~~~~l~~~l~~~-gi~v~~~~----~~~iRi~~~~~~~~~~i~~~~~~l~~~l  391 (392)
T 3ruy_A          333 KGLFIGIELNE--PARPYCEQLKAA-GLLCKETH----ENVIRIAPPLVISEEDLEWAFQKIKAVL  391 (392)
T ss_dssp             ETTEEEEEESS--CSHHHHHHHHTT-TEECCCBT----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             eeeEEEEEEcc--hHHHHHHHHHHC-CcEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            23466677754  678899999865 99998663    5789999887889999999999999876

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.96  E-value=1.3e-27  Score=229.30  Aligned_cols=324  Identities=14%  Similarity=0.011  Sum_probs=219.8

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhcCC-----CCc--eEEecCChhHHHHHH--H
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTT-----SGT--PFLIPTTGTGAWESA--L   77 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~-----~~~--~i~~~~g~t~a~~~~--~   77 (401)
                      +.|+.-.++++.++.+.+++.+....  ...+.......++++.++++++..     .++  ++++|+|+++|+..+  +
T Consensus        57 G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~  136 (420)
T 4f4e_A           57 GVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADF  136 (420)
T ss_dssp             CSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHH
T ss_pred             eeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHH
Confidence            33444445677778899888774322  112333344568888888887552     233  599999999999998  4


Q ss_pred             hccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC--CCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc
Q 015729           78 TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES--DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN  155 (401)
Q Consensus        78 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~  155 (401)
                      .+++++||+|+++.|+|+++.  ..++..|++++.++.  +.++.+|++++++.+++.+ ++++++++++++||||.+++
T Consensus       137 ~~~~~~gd~Vlv~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~v~i~~p~NPtG~~~~  213 (420)
T 4f4e_A          137 LRTLNPKAKVAISDPSWENHR--ALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYE-PGTIVVLHACCHNPTGVDLN  213 (420)
T ss_dssp             HHHHCTTCCEEEEESCCHHHH--HHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCC-TTCEEEEECSSCTTTCCCCC
T ss_pred             HHHhCCCCEEEEeCCCcHhHH--HHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCCCCC
Confidence            567899999999999887754  567788999999998  3456789999999997543 36789999999999999986


Q ss_pred             ---hHHHHHHhhhcCCCcEEEEecccccCccee-----c---c-CcccceEEEecCCCcccCCCc--ceEEEe---cHHH
Q 015729          156 ---LSKVRKLLDEYRHPALFLVDGVSSICAIDF-----R---M-DEWGIDVALTGSQKALSLPTG--MGIVCA---SPKA  218 (401)
Q Consensus       156 ---l~~i~~l~~~~~~~~~li~D~a~~~~~~~~-----~---~-~~~~~di~~~s~~K~l~g~~g--~G~l~~---~~~~  218 (401)
                         +++|.++|++  +|+++|+|++|+......     .   . ...+.++++.|.+|.++ ++|  +|++++   +++.
T Consensus       214 ~~~l~~i~~~~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~~~~~~~~  290 (420)
T 4f4e_A          214 DAQWAQVVEVVKA--RRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFS-LYGERVGALSIITDSKDE  290 (420)
T ss_dssp             HHHHHHHHHHHHH--HTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT-CGGGCEEEEEEECSSHHH
T ss_pred             HHHHHHHHHHHHH--CCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCc-CcCCCcEEEEEEcCCHHH
Confidence               5578888999  999999999987544211     0   1 12356789999999985 444  788764   4554


Q ss_pred             HHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHH--H---HhcHHHHHHHHHHHHHHHHHHHHHc-
Q 015729          219 LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI--F---EEGLENVIERHRRLGKATRLAVEAW-  292 (401)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~--~---~~g~~~~~~~~~~~~~~l~~~L~~~-  292 (401)
                      .+.+...            ........  ..+++.....++.+++...  .   ...+++.+++++++++.+.+.|+++ 
T Consensus       291 ~~~~~~~------------~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  356 (420)
T 4f4e_A          291 AARVLSQ------------LKRVIRTN--YSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAG  356 (420)
T ss_dssp             HHHHHHH------------HHHHHHTT--TSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHH------------HHHHHhcc--cCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4432210            01111011  1223343333333333321  1   2236778889999999999999986 


Q ss_pred             ---CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          293 ---GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       293 ---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                         |+.+..+    ..+.++++.+    +.+.+.+.|.++ ||.+.++        .|+++. ..+++++++++++|+++
T Consensus       357 ~~~~~~~~~~----~~g~~~~~~~----~~~~~~~~l~~~-gI~v~~~--------~Ris~~-~~~~~~i~~~~~~l~~~  418 (420)
T 4f4e_A          357 IERDFSFINA----QRGMFSYSGL----TSAQVDRLREEF-GIYAVST--------GRICVA-ALNTRNLDVVANAIAAV  418 (420)
T ss_dssp             CSSCCTHHHH----SCSSEEECCC----CHHHHHHHHHHH-CEECCTT--------SEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred             CCCCceeECC----CccEEEEeCC----CHHHHHHHHHhC-CEEecCC--------CeEEEe-cCCHHHHHHHHHHHHHH
Confidence               5555543    2334555444    455666666554 9998764        188764 46888899999999987


Q ss_pred             H
Q 015729          370 L  370 (401)
Q Consensus       370 l  370 (401)
                      +
T Consensus       419 l  419 (420)
T 4f4e_A          419 L  419 (420)
T ss_dssp             H
T ss_pred             h
Confidence            6

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.96  E-value=5.8e-27  Score=222.74  Aligned_cols=329  Identities=10%  Similarity=0.093  Sum_probs=223.5

Q ss_pred             ChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCCCeEEEEcCCcchHH
Q 015729           20 IPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSLL   98 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~~   98 (401)
                      +++++++++.+.....+.+.......++++.+++++|.+   .+++++|+++|+..++.++ +++||+|+++.++|+++.
T Consensus        10 ~~~~v~~a~~~~~~~~~~~~~g~~~~~l~~~la~~~~~~---~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~   86 (394)
T 1o69_A           10 MGGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKDYSKSE---NALALNSATAALHLALRVAGVKQDDIVLASSFTFIASV   86 (394)
T ss_dssp             --CCHHHHHHHHHHHTTTSCTTHHHHHHHHHHHHHHCCS---EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGT
T ss_pred             CCHHHHHHHHHHHHcCCccCCChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHH
Confidence            444555555553322222222356889999999999873   4999999999999999988 899999999999988875


Q ss_pred             HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEeccc
Q 015729           99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS  178 (401)
Q Consensus        99 ~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~  178 (401)
                        ..++..|++++.++.+.++.+|++++++++++.. .++++|++++   ++|...++++|.++|++  +|+++|+|++|
T Consensus        87 --~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~-~~~~~v~~~~---~~G~~~~l~~i~~l~~~--~~~~li~Dea~  158 (394)
T 1o69_A           87 --APICYLKAKPVFIDCDETYNIDVDLLKLAIKECE-KKPKALILTH---LYGNAAKMDEIVEICKE--NDIVLIEDAAE  158 (394)
T ss_dssp             --HHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCS-SCCCEEEEEC---GGGCCCCHHHHHHHHHH--TTCEEEEECTT
T ss_pred             --HHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhccc-CCceEEEEEC---CCCChhhHHHHHHHHHH--cCCEEEEECcC
Confidence              3456689999999998777899999999997522 2578898885   79999999999999999  99999999999


Q ss_pred             ccCcceeccC--c-ccceEEEecCCCcccCCCcceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHH
Q 015729          179 SICAIDFRMD--E-WGIDVALTGSQKALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQ  254 (401)
Q Consensus       179 ~~~~~~~~~~--~-~~~di~~~s~~K~l~g~~g~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  254 (401)
                      +.|....+..  . .++|+.++|.+|.++ +.++|+++++ +++.+.+........... ..+ .....| +...+++..
T Consensus       159 ~~g~~~~~~~~~~~~~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~-~~~-~~~~~g-~~~~~~~~~  234 (394)
T 1o69_A          159 ALGSFYKNKALGTFGEFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENC-LHY-EHLDYG-YNYRLSNVL  234 (394)
T ss_dssp             CTTCEETTEETTSSSSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSS-SSC-CCSSCC-CBCBCCHHH
T ss_pred             cccceeCCcccccccCcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccC-ccc-cccccC-cccCcCHHH
Confidence            9765432211  1 358899999999885 5678999995 787766643211100000 000 000011 011133343


Q ss_pred             HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCc-eeEEEEcCCC-----------------
Q 015729          255 LLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSD-TVTAVIVPSH-----------------  316 (401)
Q Consensus       255 ~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~-~~~~~~~~~~-----------------  316 (401)
                      .++++. +++     .+++..++.+++++++.+.|.++ +++.........+ .++++.++.+                 
T Consensus       235 aa~~l~-~l~-----~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  307 (394)
T 1o69_A          235 GAIGVA-QME-----VLEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKN  307 (394)
T ss_dssp             HHHHHH-HHT-----THHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCC
T ss_pred             HHHHHH-HHH-----HHHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhccccccccccccccc
Confidence            222221 122     35667888899999999999886 5544332111112 1456777532                 


Q ss_pred             ----CCHHHHHHHHHhhCCeEEccCCCC------CC-----C---------cEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          317 ----INSSEIVRRAWQRYNLSLGLGLNK------VA-----G---------KVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       317 ----~~~~~l~~~L~~~~~i~v~~g~~~------~~-----~---------~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                          .+..++.+.|.++ ||.++++..+      ..     +         ..+++.++.++|++|+++++++|+++++
T Consensus       308 ~~~~~~~~~l~~~L~~~-gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~  385 (394)
T 1o69_A          308 ITLHPKISKLIEDLKNK-QIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK  385 (394)
T ss_dssp             CCCCHHHHHHHHHHHHT-TCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             cccccCHHHHHHHHHHc-CCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence                2567899999765 9999888432      11     1         3466666778999999999999998864

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.96  E-value=1.5e-27  Score=226.90  Aligned_cols=306  Identities=14%  Similarity=0.102  Sum_probs=219.7

Q ss_pred             ChHHHHHHHccCcCC--CCC-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC--CCCCeEEEEcCCc
Q 015729           20 IPDQVIRAMNRNNED--YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--SPGDRIISFLIGQ   94 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~~~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~--~~gd~vl~~~~~~   94 (401)
                      .++.+.+++.+....  +.. ....+...++++.++++++.+. +++++++|+++|+..++.++.  .++|+|++++++|
T Consensus        62 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y  140 (395)
T 1vef_A           62 GNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPEL-NRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGF  140 (395)
T ss_dssp             TCHHHHHHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTE-EEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCC
T ss_pred             CCHHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHHHhcCCCc-CEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCc
Confidence            667777777664321  111 1135678899999999998643 459999999999999887653  6789999999877


Q ss_pred             chHHHHHHHHHcCCc------------EEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHH
Q 015729           95 FSLLWIDQQQRLNFN------------VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSK  158 (401)
Q Consensus        95 ~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~  158 (401)
                      ++... ......|.+            +..++.     .|++++++++++    ++++|++++++|+||.+.+    +++
T Consensus       141 ~~~~~-~~~~~~g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~----~~~~v~~~~~~~~tG~~~~~~~~l~~  210 (395)
T 1vef_A          141 SGRTM-GSLSVTWEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVDE----ETAAVILEPVQGEGGVRPATPEFLRA  210 (395)
T ss_dssp             CCSSH-HHHHTCCCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCCT----TEEEEEECSEETTTTSEECCHHHHHH
T ss_pred             CCCch-hhhhhcCCcccccccCCCCCCeeEeCC-----CcHHHHHHHhcc----CEEEEEEeCccCCCCccCCCHHHHHH
Confidence            65432 223344554            333332     389999999873    5789998888899999887    999


Q ss_pred             HHHHhhhcCCCcEEEEecccc-cCcc----eeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccc
Q 015729          159 VRKLLDEYRHPALFLVDGVSS-ICAI----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD  233 (401)
Q Consensus       159 i~~l~~~~~~~~~li~D~a~~-~~~~----~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~  233 (401)
                      |.++|++  +|+++|+|++|+ ++..    .++.....+|++  |.+|+++++.++|++++++++.+.+....       
T Consensus       211 i~~l~~~--~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~~~~~~l~~~~-------  279 (395)
T 1vef_A          211 AREITQE--KGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGGGVPLGVAVMREEVARSMPKGG-------  279 (395)
T ss_dssp             HHHHHHH--HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCEEEEEEHHHHHTSCTTS-------
T ss_pred             HHHHHHH--cCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccCCCceEEEEehHHHHhhhccCC-------
Confidence            9999999  999999999998 3211    112223356877  45899987777899999998777664310       


Q ss_pred             hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEc
Q 015729          234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV  313 (401)
Q Consensus       234 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~  313 (401)
                                 ....++.+...++++.++++.+..   +...++..++++++.+.|++++.++....+  ..+.++++.+
T Consensus       280 -----------~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~g~~~~~~~  343 (395)
T 1vef_A          280 -----------HGTTFGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPSPKIREVR--GMGLMVGLEL  343 (395)
T ss_dssp             -----------SCCSSTTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEEE--EETTEEEEEE
T ss_pred             -----------cCCCcCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhcCceEEEE--EEEEEEEEEE
Confidence                       011334677777778888887654   346778888999999999887543321111  1335778888


Q ss_pred             CCCCCHHHHHHHHH-hhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          314 PSHINSSEIVRRAW-QRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       314 ~~~~~~~~l~~~L~-~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      +.  +..++.+.|. ++ ||.+.++    .++++||++....+++|+++++++|++++
T Consensus       344 ~~--~~~~l~~~l~~~~-gi~v~~~----~~~~iRi~~~~~~~~~~i~~~~~~l~~~l  394 (395)
T 1vef_A          344 KE--KAAPYIARLEKEH-RVLALQA----GPTVIRFLPPLVIEKEDLERVVEAVRAVL  394 (395)
T ss_dssp             SS--CSHHHHHHHHHHH-CEECEES----STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             cC--hHHHHHHHHHHHC-CeEEecC----CCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            64  3678999998 65 9999875    25789998877789999999999998875

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.96  E-value=7.4e-27  Score=222.35  Aligned_cols=320  Identities=14%  Similarity=0.066  Sum_probs=221.2

Q ss_pred             CcccccCCCcCChHHHHHHHccCcC--CC--CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCC
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNE--DY--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPG   84 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~--~~--~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~g   84 (401)
                      ..+.+.+.|..+.+++.+++.....  ..  .+....+...++++.+++++|.+  + .+++++|++|+..++.+++++|
T Consensus        27 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~--~-~i~~~sG~~a~~~~l~~~~~~g  103 (398)
T 2rfv_A           27 LSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGE--A-GLATASGISAITTTLLTLCQQG  103 (398)
T ss_dssp             SSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCS--E-EEEESSHHHHHHHHHHHHCCTT
T ss_pred             cCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCC--c-EEEECCHHHHHHHHHHHHhCCC
Confidence            4455667788888888888762211  11  12224577889999999999986  3 6667778899999998889999


Q ss_pred             CeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHH
Q 015729           85 DRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKL  162 (401)
Q Consensus        85 d~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l  162 (401)
                      |+|+++.+.|++..  +...++..|++++.++.+     |++++++.+++    +++++++++++||||.+.|+++|.++
T Consensus       104 d~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~----~~~~v~~~~~~nptG~~~~l~~i~~l  174 (398)
T 2rfv_A          104 DHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-----KPEEIRAAMRP----ETKVVYIETPANPTLSLVDIETVAGI  174 (398)
T ss_dssp             CEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCCT----TEEEEEEESSBTTTTBCCCHHHHHHH
T ss_pred             CEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhcCC----CCeEEEEECCCCCCCcccCHHHHHHH
Confidence            99999999988765  223347789999999865     89999999873    57999999999999999999999999


Q ss_pred             hhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCc--ceEEEecHHHHH-HhccCCCCccccchHHHHH
Q 015729          163 LDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTG--MGIVCASPKALE-ASKTAKSVRVFFDWKDYIK  239 (401)
Q Consensus       163 ~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~  239 (401)
                      |++  +|+++|+|++|+.+..... ...++|+++.|.||+++++.+  .|+++++++.++ .+...            ..
T Consensus       175 ~~~--~~~~li~De~~~~~~~~~~-~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~------------~~  239 (398)
T 2rfv_A          175 AHQ--QGALLVVDNTFMSPYCQQP-LQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVG------------LK  239 (398)
T ss_dssp             HHH--TTCEEEEECTTTCTTTCCG-GGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTH------------HH
T ss_pred             HHH--cCCEEEEECCCcccccCCc-hhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHH------------HH
Confidence            999  9999999999987754322 245789999999999976543  499999998766 33321            01


Q ss_pred             HhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcC---------------CccccCCCccC
Q 015729          240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG---------------LKNCTQKEEWF  304 (401)
Q Consensus       240 ~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g---------------~~~~~~~~~~~  304 (401)
                      .+.     .++.+...++++.++++.     +....++..++.+.+.+.|++.+               +.+..++. ..
T Consensus       240 ~~~-----~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~-~~  308 (398)
T 2rfv_A          240 DIT-----GGCMSPFNAWLTLRGVKT-----LGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQM-SL  308 (398)
T ss_dssp             HTT-----CCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHC-SS
T ss_pred             hCC-----CCCCCHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhC-CC
Confidence            110     123556555555555543     23345556677777788887642               11111110 12


Q ss_pred             CceeEEEEcCCCCCHHHHHHHHHhhC---CeEEccCCCC-----------------------CCCcEEEEeecccCCHHH
Q 015729          305 SDTVTAVIVPSHINSSEIVRRAWQRY---NLSLGLGLNK-----------------------VAGKVFRIGHLGHLNELQ  358 (401)
Q Consensus       305 ~~~~~~~~~~~~~~~~~l~~~L~~~~---~i~v~~g~~~-----------------------~~~~~~Ri~~~~~~~~~d  358 (401)
                      .+.++++.+++.  ..+. ..+.++.   ++.+..|...                       ...+.+||++....++++
T Consensus       309 ~g~~~~~~~~~~--~~~~-~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~  385 (398)
T 2rfv_A          309 PGGIISFEIAGG--LEAG-RRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDI  385 (398)
T ss_dssp             CCSEEEEEETTH--HHHH-HHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHH
T ss_pred             CceEEEEEEcCC--HHHH-HHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHH
Confidence            345777888531  1222 2333332   6666666220                       115789999988888899


Q ss_pred             HHHHHHHHHHH
Q 015729          359 LLGCLAGVEMI  369 (401)
Q Consensus       359 i~~~~~~i~~~  369 (401)
                      ++.++++|+++
T Consensus       386 i~~l~~al~~~  396 (398)
T 2rfv_A          386 INDLEHAIRKA  396 (398)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            98888888653

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.96  E-value=6e-28  Score=232.76  Aligned_cols=287  Identities=11%  Similarity=0.032  Sum_probs=218.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC--CCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES--DWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~  118 (401)
                      .....++++.+++ +|.+  +.+++++|+|+|+..++.+++++||+|+++.++|++..  ..+...|++++.++.  +.+
T Consensus        56 ~~~~~~~~~~la~-~g~~--~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~--~~~~~~G~~~~~v~~~~~~~  130 (446)
T 2x3l_A           56 EEVILKSMKQVEK-HSDY--DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVL--HALDISQQEGHFIETHQSPL  130 (446)
T ss_dssp             SSHHHHHHHHHCS-CTTE--EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHH--HHHHHHTCCEEECEEEECTT
T ss_pred             chHHHHHHHHHHh-cCCC--ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHH--HHHHHcCCeEEEEeCeeccc
Confidence            3567899999999 9986  45899999999999999999999999999999988875  345567999999887  544


Q ss_pred             ----CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcc-----eeccCc
Q 015729          119 ----EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDE  189 (401)
Q Consensus       119 ----~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~-----~~~~~~  189 (401)
                          +.+|++++   +.    ++++++++++ +|++|.+.|+++|.++|++  +|+++|+|++|+. ..     +.+...
T Consensus       131 ~~~~~~~d~~~l---~~----~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~--~~~~livDea~~~-~~~f~~~~~~~~~  199 (446)
T 2x3l_A          131 TNHYNKVNLSRL---NN----DGHKLVVLTY-PNYYGETFNVEEVIKSLHQ--LNIPVLIDEAHGA-HFGLQGFPDSTLN  199 (446)
T ss_dssp             TSSEEEEEC--------------CCEEEEES-SCTTSCCCCHHHHHHHHHH--TTCCEEEECTTCT-TTTSTTSCCCGGG
T ss_pred             cCcCCCCCHHHH---cC----CCceEEEEEC-CCCCeEecCHHHHHHHHHh--cCCeEEEcchhhh-hhccCCCCCChHH
Confidence                45678877   23    3679999998 6679999999999999999  9999999999986 22     344445


Q ss_pred             ccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHh
Q 015729          190 WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEE  269 (401)
Q Consensus       190 ~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~  269 (401)
                      .++|++++|.||+++++.|+|+++++++.++ ...         +......+.     .++++...++++.++++.+...
T Consensus       200 ~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~-~~~---------~~~~~~~~~-----~~s~~~~~~aal~~a~~~l~~~  264 (446)
T 2x3l_A          200 YQADYVVQSFHKTLPALTMGSVLYIHKNAPY-REN---------IIEYLSYFQ-----TSSPSYLIMASLESAAQFYKTY  264 (446)
T ss_dssp             GTCSEEEECHHHHSSSCTTCEEEEEETTCTT-HHH---------HHHHHHHHS-----CSSCCHHHHHHHHHHHHHHHHC
T ss_pred             cCCCEEEECCccccccccccEEEEEcCCcCC-HHH---------HHHHHHHHc-----CCCchHHHHHHHHHHHHHHHHh
Confidence            6789999999999888888999999887533 110         011111222     3357787888888888888877


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEc-cCCCCCCCcEEEE
Q 015729          270 GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLG-LGLNKVAGKVFRI  348 (401)
Q Consensus       270 g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~-~g~~~~~~~~~Ri  348 (401)
                      +.++..++..++.+++++.    |+++..+.    .+..+++.++ +.+..++.+.|.++ ||.+. ++     .+++|+
T Consensus       265 g~~~~~~~~~~l~~~l~~~----g~~~~~~~----~~~~l~i~~~-~~~~~~l~~~L~~~-GI~v~~~g-----~~~iRi  329 (446)
T 2x3l_A          265 DSTLFFAKRAQLIECLENK----GFEMLQVD----DPLKLLIKYE-GFTGHDIQNWFMNA-HIYLELAD-----DYQALA  329 (446)
T ss_dssp             CCHHHHHHHHHHHHHHHHH----TCEEEECS----STTEEEEECT-TSCHHHHHHHHHHT-TEEESEEC-----SSCEEE
T ss_pred             CHHHHHHHHHHHHHHHHHc----CCEECcCC----CCeEEEEEeC-CcCHHHHHHHHHHC-CCEEEecC-----CCEEEE
Confidence            6665777777777777766    77766532    2235777775 67888999999887 99986 33     357999


Q ss_pred             eecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          349 GHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       349 ~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      ++...+|++|+ +++++|+++++++.
T Consensus       330 ~~~~~~t~e~i-~l~~aL~~~~~~~~  354 (446)
T 2x3l_A          330 ILPLWHHDDTY-LFDSLLRKIEDMIL  354 (446)
T ss_dssp             ECCCCCTTCCC-CHHHHHHHHHTCCC
T ss_pred             EeecCCCHHHH-HHHHHHHHHHHhhc
Confidence            98877899999 99999999987653

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.96  E-value=1.7e-27  Score=227.89  Aligned_cols=323  Identities=11%  Similarity=-0.001  Sum_probs=221.1

Q ss_pred             CcccccCCCcCChHHHHHHHcc-CcCC--CCCccHHHHHHHHHHHHHHHhcCC-----CCceEEe--cCChhHHHHHHH-
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNR-NNED--YRSPAVPALTKTLLEDIKKIFKTT-----SGTPFLI--PTTGTGAWESAL-   77 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~-~~~~--~~~~~~~~~~~~l~~~la~~~g~~-----~~~~i~~--~~g~t~a~~~~~-   77 (401)
                      +.|++..++.++++.+.+++.+ ....  ...+.......++++.++++++..     .++++++  ++|+++|++.++ 
T Consensus        37 g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~  116 (412)
T 1yaa_A           37 GAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAK  116 (412)
T ss_dssp             CCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHH
T ss_pred             eeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHH
Confidence            3444445555778889998877 4321  112323344678999999888431     2345999  999999999873 


Q ss_pred             -hccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC-CC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCccccc
Q 015729           78 -TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES-DW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN  154 (401)
Q Consensus        78 -~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~  154 (401)
                       .+.+.+||+|+++.++|+++.  ..++..|++++.++. ++ ++.+|++++++.+++.+ ...+++++++++||||.++
T Consensus       117 ~~~~~~~gd~Vl~~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~~~~p~nPtG~~~  193 (412)
T 1yaa_A          117 FFSKFFPDKLVYLSKPTWANHM--AIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAP-EGSIFVLHSCAHNPTGLDP  193 (412)
T ss_dssp             HHHHHCTTCCEEEEESCCTTHH--HHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSC-TTCEEEEECSSCTTTCCCC
T ss_pred             HHHHhCCCCEEEEeCCCCccHH--HHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCCCC
Confidence             445679999999999888764  556778999999998 43 56789999999997532 1234556699999999998


Q ss_pred             c---hHHHHHHhhhcCCCcEEEEecccccCcc--------ee-ccCccc----ceEEEecCCCcccCCCc--ceEEE--e
Q 015729          155 N---LSKVRKLLDEYRHPALFLVDGVSSICAI--------DF-RMDEWG----IDVALTGSQKALSLPTG--MGIVC--A  214 (401)
Q Consensus       155 ~---l~~i~~l~~~~~~~~~li~D~a~~~~~~--------~~-~~~~~~----~di~~~s~~K~l~g~~g--~G~l~--~  214 (401)
                      +   +++|.++|++  +|+++|+|++|+....        ++ +....+    .++++.|.+|.++ ++|  +|+++  +
T Consensus       194 ~~~~l~~l~~~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~GlriG~~~~~~  270 (412)
T 1yaa_A          194 TSEQWVQIVDAIAS--KNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAG-MYGERVGCFHLAL  270 (412)
T ss_dssp             CHHHHHHHHHHHHH--TTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSC-CGGGCEEEEEEEC
T ss_pred             CHHHHHHHHHHHHH--CCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCC-CcCCcceEEEEEe
Confidence            6   5568888999  9999999999864321        11 222222    4688999999884 555  69988  6


Q ss_pred             -----cHH----HHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHH-----HhcHHHHHHHHHH
Q 015729          215 -----SPK----ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRR  280 (401)
Q Consensus       215 -----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~-----~~g~~~~~~~~~~  280 (401)
                           +++    +.+.+...               .. ..  ..+++...+.++.++++...     ..++++.++++++
T Consensus       271 ~~~~~~~~~~~~l~~~l~~~---------------~~-~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~  332 (412)
T 1yaa_A          271 TKQAQNKTIKPAVTSQLAKI---------------IR-SE--VSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITK  332 (412)
T ss_dssp             CSCTTHHHHHHHHHHHHHHH---------------HH-TT--TSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHH---------------Hh-hc--cCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence                 555    43333210               00 11  22345655566666665432     2346788899999


Q ss_pred             HHHHHHHHHHHcC----CccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCH
Q 015729          281 LGKATRLAVEAWG----LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNE  356 (401)
Q Consensus       281 ~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~  356 (401)
                      +++++.+.|++++    +++..+    ..+.++++.+    +...+ ..+++++||.+.+        ++||++.. .++
T Consensus       333 ~~~~l~~~L~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~-~~~l~~~gi~v~~--------~~Ris~~~-~~~  394 (412)
T 1yaa_A          333 MRHALRDHLVKLGTPGNWDHIVN----QCGMFSFTGL----TPQMV-KRLEETHAVYLVA--------SGRASIAG-LNQ  394 (412)
T ss_dssp             HHHHHHHHHHHHTCSSCCTHHHH----CCSSEEECCC----CHHHH-HHHHHHHCEECCT--------TSEEEGGG-CCT
T ss_pred             HHHHHHHHHHhhCCCCCeeeecc----CceEEEeeCC----CHHHH-HHHHHhCCEEecc--------CcEEEEcc-CCH
Confidence            9999999999875    666543    2334444333    45566 4444445999874        46998764 699


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 015729          357 LQLLGCLAGVEMILKDV  373 (401)
Q Consensus       357 ~di~~~~~~i~~~l~~~  373 (401)
                      +++++++++|+++++.+
T Consensus       395 ~~i~~~~~~l~~~~~~~  411 (412)
T 1yaa_A          395 GNVEYVAKAIDEVVRFY  411 (412)
T ss_dssp             TTHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHhh
Confidence            99999999999988753

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.96  E-value=1.5e-26  Score=224.15  Aligned_cols=336  Identities=14%  Similarity=0.081  Sum_probs=224.8

Q ss_pred             CCCcccccC---CCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCC
Q 015729            7 PGKNHLFVP---GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSP   83 (401)
Q Consensus         7 ~~~~~~~~~---~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~   83 (401)
                      .+..|++..   +|.++++++++++.....   .+.......++++.++++++.+   .+++++||++|+..++.+++++
T Consensus        40 ~~~~ylD~~~~~~~~~~~~~~~~a~~~~~~---~y~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~a~~~al~~l~~~  113 (456)
T 2ez2_A           40 SKDIYIDLLTDSGTNAMSDKQWAGMMMGDE---AYAGSENFYHLERTVQELFGFK---HIVPTHQGRGAENLLSQLAIKP  113 (456)
T ss_dssp             GGGCSEECSCSSSCCCCCHHHHHHHTTCCC---CSSSCHHHHHHHHHHHHHHCCS---EEEEESSHHHHHHHHHHHHCCT
T ss_pred             cccceeeeccccCCccCCHHHHHHhhcchh---hcccChhHHHHHHHHHHHhCCC---cEEEeCCcHHHHHHHHHHhCCC
Confidence            345566653   455778999999985321   2333566789999999999875   3899999999999999888999


Q ss_pred             CCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCC----------CCCCChHHHHHHHhccCCCCceEEEEEecCC-Cccc
Q 015729           84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW----------GEGAKLDVLASKLAADTAHTIKAICIVHNET-ATGV  152 (401)
Q Consensus        84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~----------~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n-~tG~  152 (401)
                      ||  +++.++|++.. ...++..|++++.++++.          ++.+|++++++++++.+..+++++++++++| |||.
T Consensus       114 gd--i~~~~~~~~~~-~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~  190 (456)
T 2ez2_A          114 GQ--YVAGNMYFTTT-RYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQ  190 (456)
T ss_dssp             TC--EEEESSCCHHH-HHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSB
T ss_pred             CC--Eeccccccchh-HHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCc
Confidence            99  77788775543 245677899999998763          2568999999999764322358899998988 9999


Q ss_pred             ccc---hHHHHHHhhhcCCCcEEEEecccccCc--------ceeccC---------cccceEEEecCCCcccCCCcceEE
Q 015729          153 TNN---LSKVRKLLDEYRHPALFLVDGVSSICA--------IDFRMD---------EWGIDVALTGSQKALSLPTGMGIV  212 (401)
Q Consensus       153 ~~~---l~~i~~l~~~~~~~~~li~D~a~~~~~--------~~~~~~---------~~~~di~~~s~~K~l~g~~g~G~l  212 (401)
                      +.+   +++|.++|++  +|+++|+|++|+.|.        ..++..         ....|++++|++|+++ .+..|++
T Consensus       191 ~~~~~~l~~i~~la~~--~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~-~~~gG~~  267 (456)
T 2ez2_A          191 PVSMANMRAVRELTEA--HGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL-VNIGGFL  267 (456)
T ss_dssp             CCCHHHHHHHHHHHHH--TTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC-CSSCEEE
T ss_pred             cCCHHHHHHHHHHHHH--cCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCC-CCceeEE
Confidence            887   8999999999  999999999998641        111101         1235888888889764 3335899


Q ss_pred             Ee-cHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 015729          213 CA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA  291 (401)
Q Consensus       213 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~  291 (401)
                      +. ++++.+.+....            .... +.....+.+...+.++  ++....... +...++..++.+++.+.|++
T Consensus       268 ~~~~~~~~~~~~~~~------------~~~~-~~~~~~~~~~~~~~a~--a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~  331 (456)
T 2ez2_A          268 CMNDDEMFSSAKELV------------VVYE-GMPSYGGLAGRDMEAM--AIGLREAMQ-YEYIEHRVKQVRYLGDKLKA  331 (456)
T ss_dssp             EESCHHHHHHHHHHH------------HHHT-CCTTTTTCCHHHHHHH--HHHHHHHTC-HHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHH------------hhcc-CcccccCcchhHHHHH--HHHHHHHhH-HHHHHHHHHHHHHHHHHHhc
Confidence            88 577766554210            0000 1000111222222221  222222111 45667777888889999988


Q ss_pred             cCCccccCCCccCCceeEEEEcC---CCCCHHHH-----HHHHHhhCCeEEcc-CCC------------CCCCcEEEEee
Q 015729          292 WGLKNCTQKEEWFSDTVTAVIVP---SHINSSEI-----VRRAWQRYNLSLGL-GLN------------KVAGKVFRIGH  350 (401)
Q Consensus       292 ~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l-----~~~L~~~~~i~v~~-g~~------------~~~~~~~Ri~~  350 (401)
                      .|+++..+.    .+.++++.++   .+.+..++     ++.|.++.||.+.+ +..            ....+++||++
T Consensus       332 ~g~~~~~p~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~  407 (456)
T 2ez2_A          332 AGVPIVEPV----GGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTI  407 (456)
T ss_dssp             TTCCBCSSC----CSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEEC
T ss_pred             CCCccccCC----CceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEe
Confidence            777765432    2345666652   23444455     77774444987543 321            11136799988


Q ss_pred             ccc-CCHHHHHHHHHHHHHHHHhcC
Q 015729          351 LGH-LNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       351 ~~~-~~~~di~~~~~~i~~~l~~~~  374 (401)
                      ... ++++|+++++++|++++++..
T Consensus       408 ~~~~~t~e~i~~~~~~l~~~l~~~~  432 (456)
T 2ez2_A          408 PRRVYTYAHMDVVADGIIKLYQHKE  432 (456)
T ss_dssp             CTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            765 799999999999999987643

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.96  E-value=2.6e-27  Score=226.54  Aligned_cols=318  Identities=12%  Similarity=-0.013  Sum_probs=219.0

Q ss_pred             cCChHHHHHHHccCc--C-CCCCccHHHHHHHHHHHHHHHhcCC-----CCceEEe--cCChhHHHHHHH--hccCCCC-
Q 015729           18 VHIPDQVIRAMNRNN--E-DYRSPAVPALTKTLLEDIKKIFKTT-----SGTPFLI--PTTGTGAWESAL--TNTLSPG-   84 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~--~-~~~~~~~~~~~~~l~~~la~~~g~~-----~~~~i~~--~~g~t~a~~~~~--~~~~~~g-   84 (401)
                      .++++.+.+++.+..  . ....+.......++++.++++++..     .++++++  ++|+++|++.++  .+++.+| 
T Consensus        47 ~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~  126 (412)
T 1ajs_A           47 PWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGT  126 (412)
T ss_dssp             CCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSS
T ss_pred             ccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCc
Confidence            456688888887643  1 1122323344678999999999432     2345999  999999999885  3456789 


Q ss_pred             ----CeEEEEcCCcchHHHHHHHHHcCCc-EEEEeCC--CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc--
Q 015729           85 ----DRIISFLIGQFSLLWIDQQQRLNFN-VDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN--  155 (401)
Q Consensus        85 ----d~vl~~~~~~~~~~~~~~~~~~g~~-~~~v~~~--~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~--  155 (401)
                          |+|+++.++|+++.  ..++..|++ ++.++.+  .++.+|++++++.+++.. .+++++++++++||||.+++  
T Consensus       127 ~~~~d~Vl~~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~v~~~~p~nptG~~~~~~  203 (412)
T 1ajs_A          127 NNKDTPVYVSSPTWENHN--GVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAP-EFSIFVLHACAHNPTGTDPTPE  203 (412)
T ss_dssp             SCCCSCEEEEESCCTHHH--HHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSC-TTCEEEEESSSCTTTCCCCCHH
T ss_pred             CCCCCeEEEcCCCcHHHH--HHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhCC-CCcEEEEECCCCCCCCCCCCHH
Confidence                99999999988754  557778999 9999984  456789999999997532 25678888999999999976  


Q ss_pred             -hHHHHHHhhhcCCCcEEEEecccccCcc--------eec-cC-cccceEEEecCCCcccCCCc--ceEEEe---cHHHH
Q 015729          156 -LSKVRKLLDEYRHPALFLVDGVSSICAI--------DFR-MD-EWGIDVALTGSQKALSLPTG--MGIVCA---SPKAL  219 (401)
Q Consensus       156 -l~~i~~l~~~~~~~~~li~D~a~~~~~~--------~~~-~~-~~~~di~~~s~~K~l~g~~g--~G~l~~---~~~~~  219 (401)
                       +++|.++|++  +|+++|+|++|.....        ++. .. ....++++.|.+|.++ ++|  +|++++   +++..
T Consensus       204 ~l~~l~~~~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~~~~~~~~~~~  280 (412)
T 1ajs_A          204 QWKQIASVMKR--RFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFG-LYNERVGNLTVVAKEPDSI  280 (412)
T ss_dssp             HHHHHHHHHHH--HTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSC-CGGGCEEEEEEECSSHHHH
T ss_pred             HHHHHHHHHHH--CCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccC-CCCcceEEEEEecCCHHHH
Confidence             5578999999  9999999999764322        111 11 1234588999999885 555  699998   88754


Q ss_pred             HHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHH-----HhcHHHHHHHHHHHHHHHHHHHHHcC-
Q 015729          220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRRLGKATRLAVEAWG-  293 (401)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~g-  293 (401)
                      +.+...            .......+  ..+++...++++.++++...     ..++++.+++++++++++.+.|++++ 
T Consensus       281 ~~~~~~------------~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  346 (412)
T 1ajs_A          281 LRVLSQ------------MQKIVRVT--WSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKT  346 (412)
T ss_dssp             HHHHHH------------HHHHHHTT--TSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHH------------HHHHHhcc--cCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            433210            01111111  22245555566666666432     23467888899999999999999876 


Q ss_pred             ---CccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          294 ---LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       294 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                         +.+..+    ..+.++++.+    +...+ ..+.+++||.+.++        +||++.. .+++++++++++|++++
T Consensus       347 ~~~~~~~~~----~~~~~~~~~~----~~~~~-~~~l~~~gv~v~~~--------~Ris~~~-~~~~~i~~~~~~l~~~l  408 (412)
T 1ajs_A          347 PGTWNHITD----QIGMFSFTGL----NPKQV-EYLINQKHIYLLPS--------GRINMCG-LTTKNLDYVATSIHEAV  408 (412)
T ss_dssp             SSCCHHHHH----CCSSEEECCC----CHHHH-HHHHHTTCEECCTT--------SEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred             CCCeeEEcC----CCceEEEeCC----CHHHH-HHHHHhCCEEecCC--------cEEEeee-CCHHHHHHHHHHHHHHH
Confidence               555432    2334554443    34344 44444559998753        5997663 58999999999999998


Q ss_pred             Hhc
Q 015729          371 KDV  373 (401)
Q Consensus       371 ~~~  373 (401)
                      +++
T Consensus       409 ~~~  411 (412)
T 1ajs_A          409 TKI  411 (412)
T ss_dssp             HHC
T ss_pred             Hhc
Confidence            764

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.96  E-value=2.4e-26  Score=219.77  Aligned_cols=323  Identities=13%  Similarity=0.040  Sum_probs=214.3

Q ss_pred             CChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH
Q 015729           19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL   98 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~   98 (401)
                      +.++.+.+++.......++....+...++++.+++++|.+   .+++++||++|+..++.+++++||+|+++.++|++..
T Consensus        33 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~---~~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~  109 (412)
T 2cb1_A           33 KTLEEGQERFATGEGYVYARQKDPTAKALEERLKALEGAL---EAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTI  109 (412)
T ss_dssp             SSHHHHHHHHHHCCSCSBTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHH
T ss_pred             CChHHHHHHhccccCcCcCCCCChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHH
Confidence            3445555555422111122223366889999999999976   3899999999999999998999999999999887754


Q ss_pred             --HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEec
Q 015729           99 --WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDG  176 (401)
Q Consensus        99 --~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~  176 (401)
                        +...++..|++++.++.+      ++++++++++    ++++|++++++||+|.+.|+++|.++|++  +|+++|+|+
T Consensus       110 ~~~~~~~~~~g~~~~~~~~~------~~~l~~~i~~----~~~~v~~~~~~n~~G~~~~l~~i~~l~~~--~~~~li~D~  177 (412)
T 2cb1_A          110 GLFGQVLSLMGVTVRYVDPE------PEAVREALSA----KTRAVFVETVANPALLVPDLEALATLAEE--AGVALVVDN  177 (412)
T ss_dssp             HHHHHTTTTTTCEEEEECSS------HHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHH--HTCEEEEEC
T ss_pred             HHHHHHHHHcCCEEEEECCC------HHHHHHHhcc----CCeEEEEeCCCCCCcccccHHHHHHHHHH--cCCEEEEEC
Confidence              222356679999988753      8999998874    67999999999999999999999999999  999999999


Q ss_pred             ccccCcceeccCcccceEEEecCCCcccCCCc-ceEEEecH-HHH----HHhccCCCCcc-----c--cchHHHHHHhh-
Q 015729          177 VSSICAIDFRMDEWGIDVALTGSQKALSLPTG-MGIVCASP-KAL----EASKTAKSVRV-----F--FDWKDYIKFYN-  242 (401)
Q Consensus       177 a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g-~G~l~~~~-~~~----~~~~~~~~~~~-----~--~~~~~~~~~~~-  242 (401)
                      +|+.+.........++|++++|.||+++++.+ +|++++.+ +..    ..+........     +  .++....+... 
T Consensus       178 ~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~  257 (412)
T 2cb1_A          178 TFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGL  257 (412)
T ss_dssp             GGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHT
T ss_pred             CCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHH
Confidence            99877322333345799999999999976654 66666544 320    00100000000     0  01111111111 


Q ss_pred             cCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccc-cCCCc------------cCCcee
Q 015729          243 LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNC-TQKEE------------WFSDTV  308 (401)
Q Consensus       243 ~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~------------~~~~~~  308 (401)
                      ...  ....+....+.....++     .++...++..++.+++.+.|.+. ++... .+...            ...+.+
T Consensus       258 ~~~--g~~~~~~~a~~~~~~l~-----~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~i  330 (412)
T 2cb1_A          258 SLC--GMALSPFNAYLLFQGLE-----TVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPI  330 (412)
T ss_dssp             TTT--CCCCCHHHHHHHHHHGG-----GHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSE
T ss_pred             Hhc--CCCCChHHhHHHHcCCc-----hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceE
Confidence            111  11233332222222322     24556666778999999999886 77643 22110            124557


Q ss_pred             EEEEcCCCCCHHHHHHHHHhhCCeEEccCC---------CCC-----------------CCcEEEEeecccCCHHHHHHH
Q 015729          309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGL---------NKV-----------------AGKVFRIGHLGHLNELQLLGC  362 (401)
Q Consensus       309 ~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~---------~~~-----------------~~~~~Ri~~~~~~~~~di~~~  362 (401)
                      +.|.+ .  +.+++.+.|. +.||.+ .+.         .+.                 ..+.+|+|+..++++++++.+
T Consensus       331 v~~~~-~--~~~~~~~~l~-~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l  405 (412)
T 2cb1_A          331 LTLDL-G--DLERASRFLG-AIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALF  405 (412)
T ss_dssp             EEEEC-S--SHHHHHHHHH-HCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHH
T ss_pred             EEEEe-C--CHHHHHHHHH-hCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHH
Confidence            88888 3  6667777675 458888 552         220                 146899999988899999999


Q ss_pred             HHHHHH
Q 015729          363 LAGVEM  368 (401)
Q Consensus       363 ~~~i~~  368 (401)
                      +++|++
T Consensus       406 ~~al~~  411 (412)
T 2cb1_A          406 EEALEA  411 (412)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            988864

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.96  E-value=4.5e-27  Score=225.70  Aligned_cols=327  Identities=12%  Similarity=0.039  Sum_probs=223.3

Q ss_pred             CcCChHHHHHHHccCcCCCCCccH-HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcc
Q 015729           17 PVHIPDQVIRAMNRNNEDYRSPAV-PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF   95 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~~~~~-~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~   95 (401)
                      +.+.++.+++++.+...... +.. .....++++.+++++|.+   .+++++|+++|+..++.++. +||+|+++.++|+
T Consensus        27 ~~~~p~~~~~a~~~~~~~~~-y~~~~~~~~~l~~~la~~~~~~---~v~~~~ggt~al~~~l~~l~-~gd~Vlv~~~~~~  101 (424)
T 2po3_A           27 NRIDRARLYERLDRALDSQW-LSNGGPLVREFEERVAGLAGVR---HAVATCNATAGLQLLAHAAG-LTGEVIMPSMTFA  101 (424)
T ss_dssp             CCCCHHHHHHHHHHHHHHTC-CSSSCHHHHHHHHHHHHHHTSS---EEEEESCHHHHHHHHHHHHT-CCSEEEEESSSCT
T ss_pred             CCCChHHHHHHHHHHHhcCC-cccCCHHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHcC-CCCEEEECCCccH
Confidence            34456778887776442211 222 467889999999999874   49999999999999988764 7899999999988


Q ss_pred             hHHHHHHHHHcCCcEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEE
Q 015729           96 SLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLV  174 (401)
Q Consensus        96 ~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~  174 (401)
                      ++.  ..++..|++++.++.++ ++.+|++++++.+++    ++++|++++   |+|...++++|.++|++  +|+++|+
T Consensus       102 ~~~--~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~----~~~~v~~~~---~tG~~~~l~~i~~la~~--~~~~li~  170 (424)
T 2po3_A          102 ATP--HALRWIGLTPVFADIDPDTGNLDPDQVAAAVTP----RTSAVVGVH---LWGRPCAADQLRKVADE--HGLRLYF  170 (424)
T ss_dssp             HHH--HHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCT----TEEEEEEEC---GGGCCCCHHHHHHHHHH--TTCEEEE
T ss_pred             HHH--HHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCc----CCcEEEEEC---CCCCcCCHHHHHHHHHH--cCCEEEE
Confidence            765  45677899999999886 567899999988863    568888764   79999999999999999  9999999


Q ss_pred             ecccccCcceeccCcc--cceEEEecCC--CcccCCCcceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCCCCC
Q 015729          175 DGVSSICAIDFRMDEW--GIDVALTGSQ--KALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY  249 (401)
Q Consensus       175 D~a~~~~~~~~~~~~~--~~di~~~s~~--K~l~g~~g~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  249 (401)
                      |++|+.|.. ++....  ..|++++|.+  |++++ .++|+++.+ +++.+++...........+    .....|.  ..
T Consensus       171 Dea~~~g~~-~~~~~~~~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~~~l~~~~~~~~~~~~----~~~~~g~--~~  242 (424)
T 2po3_A          171 DAAHALGCA-VDGRPAGSLGDAEVFSFHATKAVNA-FEGGAVVTDDADLAARIRALHNFGFDLPG----GSPAGGT--NA  242 (424)
T ss_dssp             ECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHHBTTTTCTT----CCTTCCC--BC
T ss_pred             ECccccCCe-ECCeecccccCEEEEeCCCCCCccC-CCCeEEEeCCHHHHHHHHHHHhcCccccc----cccccCc--CC
Confidence            999996543 221111  1477777766  98865 456999998 7776665432110000000    0000010  11


Q ss_pred             CCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCcccc-CCCccCCceeEEEEcCC---CCCHHHHHH
Q 015729          250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCT-QKEEWFSDTVTAVIVPS---HINSSEIVR  324 (401)
Q Consensus       250 ~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~l~~  324 (401)
                      ..+..   ++..++.  ...+++...++..++.+++.+.|.++ |+.+.. +......+.++.+.+++   +.+..++.+
T Consensus       243 ~~~~~---~aa~~l~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  317 (424)
T 2po3_A          243 KMSEA---AAAMGLT--SLDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTGIHRDLVME  317 (424)
T ss_dssp             CCCHH---HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHSSCHHHHHH
T ss_pred             CcCHH---HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccchhhHHHHHH
Confidence            12222   1122222  12235667788888888888888876 776654 22111223456577754   567888999


Q ss_pred             HHHhhCCeEEccCCCCC-------C--------------CcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          325 RAWQRYNLSLGLGLNKV-------A--------------GKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       325 ~L~~~~~i~v~~g~~~~-------~--------------~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .|.++ ||.+.+.+.+.       .              ...+|++++..++++|+++++++|+++++..
T Consensus       318 ~L~~~-gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~  386 (424)
T 2po3_A          318 VLKAE-GVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRG  386 (424)
T ss_dssp             HHHHT-TEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHC-CCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence            88765 99998743310       0              1128888788899999999999999988654

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.96  E-value=4.8e-27  Score=229.82  Aligned_cols=302  Identities=11%  Similarity=0.005  Sum_probs=210.9

Q ss_pred             HHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccC-CCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC
Q 015729           42 ALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTL-SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES  115 (401)
Q Consensus        42 ~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~  115 (401)
                      ....++++.+++++    |.+ .++++++++|+++|+..++.+++ ++||+|+++.|.|+++.  ..++..|++++.+++
T Consensus       134 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~~~~  211 (500)
T 3tcm_A          134 QGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYS--ASIALHGGALVPYYL  211 (500)
T ss_dssp             TCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHH--HHHHHTTCEEEEEEC
T ss_pred             cChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHH--HHHHHcCCEEEEEec
Confidence            33445666666665    432 33559999999999999998887 79999999999887654  567778999999998


Q ss_pred             CCC--CCCChHHHHHHHhccC--CCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEEEEecccccCcce----
Q 015729          116 DWG--EGAKLDVLASKLAADT--AHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID----  184 (401)
Q Consensus       116 ~~~--~~~d~~~le~~~~~~~--~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~~~~~----  184 (401)
                      +++  +.+|+++|++++++..  +.+++++++++++||||.+++   +++|.++|++  +|+++|+|++|..+...    
T Consensus       212 ~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~--~~~~li~Deay~~~~~~~~~~  289 (500)
T 3tcm_A          212 NESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKN--EGLVLLADEVYQENIYVDNKK  289 (500)
T ss_dssp             BTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--HTCEEEEECTTTTCBCCTTCC
T ss_pred             ccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHH--cCCEEEEecCccccccCCCCC
Confidence            765  4789999999997521  015789999999999999987   4567777999  99999999998754321    


Q ss_pred             -ec-------cC--ccc-ceEEEecCCCcccCCC--cceEEEe---cHHHHHHhccCCCCccccchHHHHHHhhcCCCCC
Q 015729          185 -FR-------MD--EWG-IDVALTGSQKALSLPT--GMGIVCA---SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP  248 (401)
Q Consensus       185 -~~-------~~--~~~-~di~~~s~~K~l~g~~--g~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  248 (401)
                       .+       ..  ..+ ..+++.|.||++.|.+  ++|++++   ++++.+.+...             ..      ..
T Consensus       290 ~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~-------------~~------~~  350 (500)
T 3tcm_A          290 FHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKI-------------AS------VN  350 (500)
T ss_dssp             CCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHH-------------HH------TT
T ss_pred             CCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHH-------------Hh------cc
Confidence             11       10  111 2467789999984443  3599987   78877666431             00      02


Q ss_pred             CCCcHHHHHHHHHHHH----------HHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEc--CC
Q 015729          249 YTPSIQLLYGLRAALD----------LIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV--PS  315 (401)
Q Consensus       249 ~~~~~~~~~a~~~al~----------~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~~  315 (401)
                      .+++....+++..+++          .+.+ ..+..+++++++++.+.+.|+++ |+.+..+.    .+.++++.+  |.
T Consensus       351 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~----g~~~~~~~~~lp~  425 (500)
T 3tcm_A          351 LCSNITGQILASLVMNPPKASDESYASYKA-EKDGILASLARRAKALEHAFNKLEGITCNEAE----GAMYVFPQICLPQ  425 (500)
T ss_dssp             CCCCHHHHHHHHHHHSCCCSSSTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTSTTEECCCCC----BTTEECCEECCCH
T ss_pred             cCCCHHHHHHHHHHhcCccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCcEEecCC----eEEEEeeeecCch
Confidence            2356655566655553          1222 24677888999999999999987 88776543    334555333  21


Q ss_pred             ---------CCC-HHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          316 ---------HIN-SSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       316 ---------~~~-~~~l~~~L~~~~~i~v~~g~~~~---~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                               +.. ...++..++++.||.+.+|..+.   ...++|+++.  .+++++++++++|+++++++
T Consensus       426 ~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~i~~l~~~~~~~  494 (500)
T 3tcm_A          426 KAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIPAVISRFTVFHEAF  494 (500)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHH
Confidence                     111 12234455555599999985532   2357999877  69999999999999988754

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.95  E-value=2.3e-26  Score=219.12  Aligned_cols=287  Identities=14%  Similarity=0.105  Sum_probs=202.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      .....++++.+++++|.+   .+++++||++|+..++.+++++||+|+++.+.|+++.  +...++..|++++.++.+  
T Consensus        61 ~~~~~~l~~~ia~~~g~~---~~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~--  135 (404)
T 1e5e_A           61 NPTVSNLEGKIAFLEKTE---ACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA--  135 (404)
T ss_dssp             CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT--
T ss_pred             ChHHHHHHHHHHHHhCCC---cEEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC--
Confidence            456779999999999985   3777888899999999888999999999999888765  222577889999999876  


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                         |++++++++++    +++++++++++||||.+.|+++|.++|++. +|+++|+|++|+.+...... ..+.|+++.|
T Consensus       136 ---d~~~l~~~i~~----~t~~v~l~~p~NptG~v~~l~~i~~la~~~-~~~~li~De~~~~~~~~~~~-~~~~di~~~S  206 (404)
T 1e5e_A          136 ---IPGEVKKHMKP----NTKIVYFETPANPTLKIIDMERVCKDAHSQ-EGVLVIADNTFCSPMITNPV-DFGVDVVVHS  206 (404)
T ss_dssp             ---STTHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHTS-TTCEEEEECTTTCTTTCCGG-GGTCSEEEEE
T ss_pred             ---CHHHHHHhcCC----CCcEEEEECCCCCCCcccCHHHHHHHHHhh-cCCEEEEECCCchhhhCCcc-ccCCEEEEEc
Confidence               78999998873    679999999999999999999999999973 58999999999977632222 3579999999


Q ss_pred             CCCcccCCCc--ceEEEecHHHHH-HhccCCCCccccchHHHHHHhhcCCCC-CCCCcHHHHHHHHHHHHHHHHhcHHHH
Q 015729          199 SQKALSLPTG--MGIVCASPKALE-ASKTAKSVRVFFDWKDYIKFYNLGTFW-PYTPSIQLLYGLRAALDLIFEEGLENV  274 (401)
Q Consensus       199 ~~K~l~g~~g--~G~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~a~~~al~~~~~~g~~~~  274 (401)
                      .||+++++.+  .|+++++++.++ .+.....                  .+ ..+.+....++..++++.     ++..
T Consensus       207 ~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~------------------~~~g~~~~~~~~~~~~~~l~~-----~~~~  263 (404)
T 1e5e_A          207 ATKYINGHTDVVAGLICGKADLLQQIRMVGIK------------------DITGSVISPHDAWLITRGLST-----LNIR  263 (404)
T ss_dssp             TTTTTTCSSCCCCEEEEECHHHHHHHHHTCCC------------------CCCCCCCCHHHHHHHHHHHTT-----HHHH
T ss_pred             CccccCCCCCCeEEEEEECHHHHHHHHHHHHH------------------hCCCCCCCHHHHHHHHHhHhH-----HHHH
Confidence            9999976544  499999999877 6654321                  11 223455444444444432     3445


Q ss_pred             HHHHHHHHHHHHHHHHHcC-C--------------ccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccC-C
Q 015729          275 IERHRRLGKATRLAVEAWG-L--------------KNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLG-L  338 (401)
Q Consensus       275 ~~~~~~~~~~l~~~L~~~g-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g-~  338 (401)
                      .++..++.+.+.+.|++.. +              ++..++.. ..+.++.+.+++.  ..++.+.| ++.+|.+... +
T Consensus       264 ~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~-~~g~~~~~~~~~~--~~~~~~~l-~~~~i~~~~~s~  339 (404)
T 1e5e_A          264 MKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMR-MYGSMITFILKSG--FEGAKKLL-DNLKLITLAVSL  339 (404)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCS-SCCSEEEEEETTH--HHHHHHHH-HTCSSSEESSCC
T ss_pred             HHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCC-CCceEEEEEeCCC--HHHHHHHH-HhCCCceeccCC
Confidence            6666777777777777642 1              11111001 1244666787431  23444444 4558743321 1


Q ss_pred             C-------------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          339 N-------------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       339 ~-------------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .                         ....+++||++..    ||++.++++|+++++.
T Consensus       340 G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~  394 (404)
T 1e5e_A          340 GGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDA  394 (404)
T ss_dssp             CSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred             CCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHH
Confidence            1                         0114789998655    8899999999888764

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.95  E-value=8.5e-27  Score=224.15  Aligned_cols=322  Identities=15%  Similarity=0.097  Sum_probs=221.9

Q ss_pred             ChHHHHHHHccCcCC--C--CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC---C----CCCeEE
Q 015729           20 IPDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL---S----PGDRII   88 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~--~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~---~----~gd~vl   88 (401)
                      .++++++++.+....  +  ......+...++++.++++++.+. +++++++||++|++.++..+.   +    |||+|+
T Consensus        60 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi  138 (429)
T 1s0a_A           60 NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPL-ECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFL  138 (429)
T ss_dssp             SCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTC-CEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEE
T ss_pred             CCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCC-CEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEE
Confidence            467788777764321  1  111223456788999999998654 459999999999999886532   2    689999


Q ss_pred             EEcCCcchHHHHHHHHHcC-------------CcEEEEeCCC-----C-CCCChHHHHHHHhccCCCCceEEEEEec-CC
Q 015729           89 SFLIGQFSLLWIDQQQRLN-------------FNVDVVESDW-----G-EGAKLDVLASKLAADTAHTIKAICIVHN-ET  148 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~-----~-~~~d~~~le~~~~~~~~~~~~~i~~~~~-~n  148 (401)
                      +.+++|++..... ....+             ..++.++.+.     . +.+|++++++++++.. +++++++++++ +|
T Consensus       139 ~~~~~yh~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~vi~~p~~~n  216 (429)
T 1s0a_A          139 TFRNGYHGDTFGA-MSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR-HEIAAVIIEPIVQG  216 (429)
T ss_dssp             EETTCCCCSSHHH-HTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHT-TTEEEEEECSSEEC
T ss_pred             EECCCCCCCchhh-hhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCC-CCEEEEEEeecccC
Confidence            9999887654211 11111             1355566542     1 2478999999987422 25677777766 79


Q ss_pred             Ccccccc----hHHHHHHhhhcCCCcEEEEecccc-cCcc----eeccCcccceEEEecCCCcccCC-CcceEEEecHHH
Q 015729          149 ATGVTNN----LSKVRKLLDEYRHPALFLVDGVSS-ICAI----DFRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKA  218 (401)
Q Consensus       149 ~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~-~~~~----~~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~  218 (401)
                      |+|.+.+    +++|.++|++  +|+++|+|++|+ ++..    .++.....+|++++|  |+++++ .++|++++++++
T Consensus       217 ~tG~~~~~~~~l~~i~~l~~~--~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~t~s--K~l~~G~~~iG~~~~~~~~  292 (429)
T 1s0a_A          217 AGGMRMYHPEWLKRIRKICDR--EGILLIADEIATGFGRTGKLFACEHAEIAPDILCLG--KALTGGTMTLSATLTTREV  292 (429)
T ss_dssp             TTTCEEBCTHHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTSSSCCEEEEECHHH
T ss_pred             CCCcccCCHHHHHHHHHHHHH--cCCEEEEeehhhCCcccchHHHhhhcCCCCCEEEec--ccccCCCccceEEEeCHHH
Confidence            9998776    8999999999  999999999997 3321    122223356877655  989876 678999999998


Q ss_pred             HHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccc
Q 015729          219 LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNC  297 (401)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~  297 (401)
                      .+.+.......           +.  ...+++.+...++++.++++.+.+.   ...++..++++++.+.|+++ +++..
T Consensus       293 ~~~l~~~~~~~-----------~~--~~~t~~~n~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~  356 (429)
T 1s0a_A          293 AETISNGEAGC-----------FM--HGPTFMGNPLACAAANASLAILESG---DWQQQVADIEVQLREQLAPARDAEMV  356 (429)
T ss_dssp             HHHHHTSTTSS-----------CS--CCCTTTTCHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHGGGGGCTTE
T ss_pred             HHHhhcCCCcc-----------cc--cCCCCCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence            77765421000           00  0113446777778888888876653   46677888899999999875 22221


Q ss_pred             cCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          298 TQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      ....  ..+.++++.+++..+..++.+.|.++ ||.+.+.     ++++||++....+++|+++++++|++++++
T Consensus       357 ~~~~--~~g~~~~~~~~~~~~~~~l~~~l~~~-Gi~v~~~-----~~~iRis~~~~~t~e~i~~~~~~l~~~~~~  423 (429)
T 1s0a_A          357 ADVR--VLGAIGVVETTHPVNMAALQKFFVEQ-GVWIRPF-----GKLIYLMPPYIILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             EEEE--EETTEEEEEESSCBCHHHHHHHHHHT-TEECCCB-----TTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred             EEEE--EeeEEEEEEECCcccHHHHHHHHHHC-CCEEecc-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            1111  12346778886556778899999865 9998763     468999987778999999999999998754

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.95  E-value=2e-26  Score=221.98  Aligned_cols=309  Identities=18%  Similarity=0.137  Sum_probs=221.5

Q ss_pred             ChHHHHHHHccCcCC--CCCc-cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC---------CCC-Ce
Q 015729           20 IPDQVIRAMNRNNED--YRSP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL---------SPG-DR   86 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~---------~~g-d~   86 (401)
                      .+|++++++.+....  +.+. ...+...++++.+++++|.   +.+++++||++|++.++....         .+| |+
T Consensus        93 ~~p~v~~Ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~---~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~  169 (439)
T 2oat_A           93 CHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNY---HKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAK  169 (439)
T ss_dssp             TCHHHHHHHHHHHTTCSCCCTTSEESSHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCE
T ss_pred             CCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHHhcCC---CEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCe
Confidence            667888887774432  1111 1234567899999999874   349999999999999886643         356 89


Q ss_pred             EEEEcCCcchHHHHHHHHHcC------------CcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccccc
Q 015729           87 IISFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN  154 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~  154 (401)
                      |++.+++||+.... .....|            .+++.++.+     |+++++++++.   +++++|+++++++++|.+.
T Consensus       170 vi~~~~~yhg~~~~-~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~---~~~~~vi~ep~~~~~G~~~  240 (439)
T 2oat_A          170 IVFAAGNFWGRTLS-AISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERALQD---PNVAAFMVEPIQGEAGVVV  240 (439)
T ss_dssp             EEEETTCCCCSSHH-HHTTCCCHHHHTTSCSCCTTEEEECSS-----CHHHHHHHTTS---TTEEEEEECSSBTTTTSBC
T ss_pred             EEEEcCCCCCCCHh-HhhcCCChhcccCCCCCCCCeEEeCCC-----CHHHHHHHhCC---CCEEEEEEECCCCCCCCcC
Confidence            99999988775422 122223            456666643     89999999952   3578888887778899876


Q ss_pred             ----chHHHHHHhhhcCCCcEEEEecccccCcc---e--eccCcccceEEEecCCCcccCC-CcceEEEecHHHHHHhcc
Q 015729          155 ----NLSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKT  224 (401)
Q Consensus       155 ----~l~~i~~l~~~~~~~~~li~D~a~~~~~~---~--~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~  224 (401)
                          ++++|.++|++  +|+++|+|++|.....   .  ++.....+|++  |.+|+++++ .++|++++++++.+.+..
T Consensus       241 ~~~~~l~~l~~l~~~--~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~  316 (439)
T 2oat_A          241 PDPGYLMGVRELCTR--HQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSGGLYPVSAVLCDDDIMLTIKP  316 (439)
T ss_dssp             CCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCEEEEECHHHHTTSCT
T ss_pred             CCHHHHHHHHHHHHH--cCCEEEEeccccCCccCCcchhHHHhCCCCcEE--EecccccCCCCCeEEEEECHHHHhccCC
Confidence                69999999999  9999999999962211   1  12223346877  445999765 458999999998776653


Q ss_pred             CCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccC
Q 015729          225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWF  304 (401)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~  304 (401)
                      ...                +  ..++.++..+++..++++.+.++   ...++..++.+++++.|+++++++.....  .
T Consensus       317 ~~~----------------~--~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--~  373 (439)
T 2oat_A          317 GEH----------------G--STYGGNPLGCRVAIAALEVLEEE---NLAENADKLGIILRNELMKLPSDVVTAVR--G  373 (439)
T ss_dssp             TSS----------------C--CSSTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHTTSCTTTEEEEE--E
T ss_pred             CCc----------------c--cCCCcCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHhcCCCcEEEE--e
Confidence            210                1  13345667777888888877654   46778888999999999887655432111  2


Q ss_pred             CceeEEEEcCCC--CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          305 SDTVTAVIVPSH--INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       305 ~~~~~~~~~~~~--~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .+.++++.+++.  .+..++.+.|.++ ||.+.++    .++++|+++...++++|+++++++|++++++
T Consensus       374 ~g~~~~v~l~~~~~~~~~~l~~~l~~~-Gv~v~~~----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  438 (439)
T 2oat_A          374 KGLLNAIVIKETKDWDAWKVCLRLRDN-GLLAKPT----HGDIIRFAPPLVIKEDELRESIEIINKTILS  438 (439)
T ss_dssp             ETTEEEEEECCCSSCCHHHHHHHHHHT-TEECCBS----SSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             eeeEEEEEEecCccHHHHHHHHHHHHC-CeEEecC----CCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence            345777888653  4578899999876 9998864    2578999887788999999999999998865

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.95  E-value=2.7e-27  Score=228.89  Aligned_cols=324  Identities=12%  Similarity=0.083  Sum_probs=223.2

Q ss_pred             hHHHHHHHccCcC--CCC--CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCC-------CC-CeEE
Q 015729           21 PDQVIRAMNRNNE--DYR--SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS-------PG-DRII   88 (401)
Q Consensus        21 ~~~v~~a~~~~~~--~~~--~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~-------~g-d~vl   88 (401)
                      +|++.+++.+...  .+.  .....+...+++++++++++...+ .+++++||++|++.++.....       +| ++|+
T Consensus        93 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~~~~~~-~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii  171 (457)
T 3tfu_A           93 HPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLD-TVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLM  171 (457)
T ss_dssp             CHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHSSTTEE-EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred             CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCcC-EEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence            4556665555321  121  223456677999999999976543 599999999999998876543       44 5888


Q ss_pred             EEcCCcchHHHHHHHH------------HcCCcEEEEeCCCCC--CCChHHHHHHHhccCCCCceEEEEEe-cCCCcccc
Q 015729           89 SFLIGQFSLLWIDQQQ------------RLNFNVDVVESDWGE--GAKLDVLASKLAADTAHTIKAICIVH-NETATGVT  153 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~------------~~g~~~~~v~~~~~~--~~d~~~le~~~~~~~~~~~~~i~~~~-~~n~tG~~  153 (401)
                      +.+++|++........            .....+..++.+...  ..|++++++++++.. +++++|+++. ++|++|.+
T Consensus       172 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~-~~~aavi~ep~~~~~~G~~  250 (457)
T 3tfu_A          172 TWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHA-GELAAVVVEPVVQGAGGMR  250 (457)
T ss_dssp             EETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHG-GGEEEEEECSSEECTTTCE
T ss_pred             EEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCC-CCEEEEEEeCCCcCCCCcc
Confidence            8888888765322111            111234444443221  137899999997533 3578899998 89999998


Q ss_pred             cc----hHHHHHHhhhcCCCcEEEEecccccCcc---e--eccCcccceEEEecCCCcccCC-CcceEEEecHHHHHHhc
Q 015729          154 NN----LSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASK  223 (401)
Q Consensus       154 ~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~--~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~  223 (401)
                      .+    +++|.++|++  +|+++|+|+++.....   .  ++.....+|++++|  |.++|+ .++|++++++++.+.+.
T Consensus       251 ~~~~~~l~~l~~l~~~--~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~s--K~l~gG~~~lG~v~~~~~i~~~~~  326 (457)
T 3tfu_A          251 FHDPRYLHDLRDICRR--YEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVG--KALTGGYLSLAATLCTADVAHTIS  326 (457)
T ss_dssp             ECCTHHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGGGTTSSCCEEEEEEHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH--cCCEEEEEcCccCCccccchhHhHhcCCCceEEEEC--hhhhCCCcceEEEEEcHHHHHHhh
Confidence            86    8999999999  9999999999873211   1  12223347877554  999776 47899999999988774


Q ss_pred             cCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 015729          224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE  302 (401)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~  302 (401)
                      ......+           ..+.  +++.++..+++..++++.+.++   ...++..++.+++++.|+++ ..+....  .
T Consensus       327 ~~~~~~~-----------~~~~--t~~~n~~a~aaa~aaL~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~v~~--v  388 (457)
T 3tfu_A          327 AGAAGAL-----------MHGP--TFMANPLACAVSVASVELLLGQ---DWRTRITELAAGLTAGLDTARALPAVTD--V  388 (457)
T ss_dssp             HSSSCSC-----------CCCC--TTTTCHHHHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHHGGGGGSTTEEE--E
T ss_pred             ccCCCce-----------eEec--CCCcCHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHhcCCCeee--e
Confidence            2111100           0111  3456777778888888877654   36777788888899988876 2322211  1


Q ss_pred             cCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      ...+.++++.+++..+..++.+.|+++ ||.+++.     ++++||++....|++|+++++++|++++++++
T Consensus       389 r~~G~~~~i~l~~~~~~~~~~~~l~~~-Gv~v~~~-----~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~~  454 (457)
T 3tfu_A          389 RVCGAIGVIECDRPVDLAVATPAALDR-GVWLRPF-----RNLVYAMPPYICTPAEITQITSAMVEVARLVG  454 (457)
T ss_dssp             EECSSCEEEEESSCCCHHHHHHHHHHT-TEECCCB-----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred             ecCCeEEEEEECCcccHHHHHHHHHHC-CeEEEec-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            123457778886666788999999887 9998753     46899987777899999999999999998765

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.95  E-value=9.8e-27  Score=224.81  Aligned_cols=327  Identities=10%  Similarity=0.001  Sum_probs=222.9

Q ss_pred             CCcccccCCCcCChHHHHHHHccCc----CCCCCccHHHHHHHHHHHHHHHh-cCCC----CceEEe--cCChhHHHHH-
Q 015729            8 GKNHLFVPGPVHIPDQVIRAMNRNN----EDYRSPAVPALTKTLLEDIKKIF-KTTS----GTPFLI--PTTGTGAWES-   75 (401)
Q Consensus         8 ~~~~~~~~~p~~~~~~v~~a~~~~~----~~~~~~~~~~~~~~l~~~la~~~-g~~~----~~~i~~--~~g~t~a~~~-   75 (401)
                      .+.|++.++|.++.+++.+++.+..    .....+.......++++.+++++ |.+.    ++++++  |+|+++|+.. 
T Consensus        56 ~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~  135 (448)
T 3meb_A           56 VGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIG  135 (448)
T ss_dssp             SCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHH
T ss_pred             cccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHH
Confidence            3567788888999999999943321    11112323344668999999987 7652    345999  9999999987 


Q ss_pred             -HHhccCCCCCeEEEEcCCcchHHHHHHHH----HcCCcEEEEeC-CCC--CCCChHHHHHHHhccCCCCceEEEEEecC
Q 015729           76 -ALTNTLSPGDRIISFLIGQFSLLWIDQQQ----RLNFNVDVVES-DWG--EGAKLDVLASKLAADTAHTIKAICIVHNE  147 (401)
Q Consensus        76 -~~~~~~~~gd~vl~~~~~~~~~~~~~~~~----~~g~~~~~v~~-~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~  147 (401)
                       .+.+++.+||+|++++|+|.++.  ..++    ..|++++.++. +.+  +.+|++++++.+++.+ .+++++++++++
T Consensus       136 ~~~~~~~~~gd~Vlv~~p~~~~~~--~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~-~~~~~v~~~~p~  212 (448)
T 3meb_A          136 FEFLHLWMPKAEFYMPSTTWPNHY--GIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAP-EKSIFLFHACAH  212 (448)
T ss_dssp             HHHHHHHCTTCCEEEESSCCTHHH--HHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSC-TTCEEEEESSSC
T ss_pred             HHHHHHhCCCCEEEECCCCCHhHH--HHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCC-CCcEEEEeCCCC
Confidence             44567889999999999887764  4566    78999999998 554  6889999999998532 246788889999


Q ss_pred             CCcccccch---HHHHHHhhhcCCCcEEEEecccccCcce-e--c---c----CcccceEEEecCCCcccCCCc--ceEE
Q 015729          148 TATGVTNNL---SKVRKLLDEYRHPALFLVDGVSSICAID-F--R---M----DEWGIDVALTGSQKALSLPTG--MGIV  212 (401)
Q Consensus       148 n~tG~~~~l---~~i~~l~~~~~~~~~li~D~a~~~~~~~-~--~---~----~~~~~di~~~s~~K~l~g~~g--~G~l  212 (401)
                      ||||.+.+.   ++|.++|++  +|+++|+|++|...... .  +   .    ......+++.|.||.++ ++|  +|++
T Consensus       213 NPtG~~~~~~~l~~i~~l~~~--~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~RiG~l  289 (448)
T 3meb_A          213 NPSGIDFTEAQWKELLPIMKE--KKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFG-LYGERIGCL  289 (448)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHH--HTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSC-CGGGCCEEE
T ss_pred             CCCCcCCCHHHHHHHHHHHHH--CCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCC-Cccccceee
Confidence            999999875   458999999  99999999998743321 1  0   0    11234577899999884 444  6887


Q ss_pred             --Ee--------c-H----HHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHH-----HhcHH
Q 015729          213 --CA--------S-P----KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLE  272 (401)
Q Consensus       213 --~~--------~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~-----~~g~~  272 (401)
                        ++        . +    ++.+.+..               ....+   ..+++.....++.+++....     ...++
T Consensus       290 ~~v~~~~~~~~~~~~~~~~~l~~~l~~---------------~~~~~---~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~  351 (448)
T 3meb_A          290 HVVHAGVEGSVEKNKALSAAMVSGMTL---------------QIRKT---WSMSAIHGAYIVQVIVHDKRLLQMFYDNVK  351 (448)
T ss_dssp             EEECCCCSSSHHHHHHHHHHHHHHHHH---------------HHHTT---TSSCCHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             eeeeccccccccCCHHHHHHHHHHHHH---------------HHhcc---cCCccHHHHHHHHHHhcChHHHHHHHHHHH
Confidence              55        3 4    33322221               01111   22355544444444443211     12357


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCC---------ccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCC
Q 015729          273 NVIERHRRLGKATRLAVEAWGL---------KNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAG  343 (401)
Q Consensus       273 ~~~~~~~~~~~~l~~~L~~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~  343 (401)
                      +.++++.++++++.+.|+++|.         ....+    ..+.+.+..+    + .++...|++++||.+.+|.     
T Consensus       352 ~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~----~-~~~~~~ll~~~gV~v~~G~-----  417 (448)
T 3meb_A          352 EMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILT----AIGMFTFTGL----T-PEHVDYLKEKWSIYLVKAG-----  417 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHH----CCSSEEECCC----C-HHHHHHHHHHHCEEECSGG-----
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCC----CceEEEecCC----C-HHHHHHHHHhCCEEEeCCC-----
Confidence            7888899999999999998743         22222    2333444333    3 3556666556699998764     


Q ss_pred             cEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          344 KVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       344 ~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                        .||++. ..+++++++++++|+++++++++
T Consensus       418 --gRis~a-~~~~~~i~~~~~~l~~~l~~~~~  446 (448)
T 3meb_A          418 --GRMSMC-GLTESNCDYVAEAIHDAVTKLPF  446 (448)
T ss_dssp             --GEEEGG-GCCTTTHHHHHHHHHHHHHHSCC
T ss_pred             --cEEEEe-cCCHHHHHHHHHHHHHHHHhccc
Confidence              199764 46778899999999999987765

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.95  E-value=1.6e-27  Score=226.49  Aligned_cols=314  Identities=15%  Similarity=0.060  Sum_probs=213.4

Q ss_pred             cCChHHHHHHHccCcC--CCCCccHHHHHHHHHHHHHHHh-cCC-CCceEEe--cCChhHHHHHHHhccC--CCCCeEEE
Q 015729           18 VHIPDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIF-KTT-SGTPFLI--PTTGTGAWESALTNTL--SPGDRIIS   89 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~-g~~-~~~~i~~--~~g~t~a~~~~~~~~~--~~gd~vl~   89 (401)
                      .+.++.+.+++.+...  ....+.......++++.+++++ +.. .++++++  ++|+++|++.++..+.  .+||+|++
T Consensus        43 ~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~  122 (394)
T 2ay1_A           43 TPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFV  122 (394)
T ss_dssp             CCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             ccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEE
Confidence            4567888888876421  1112222234568899999887 441 2345888  9999999999886643  49999999


Q ss_pred             EcCCcchHHHHHHHHHcCCcEEEEeCC--CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhh
Q 015729           90 FLIGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLD  164 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~  164 (401)
                      +.++|+++.  ..++..|++++.++.+  .++.+|++++++.+++.+ .+++++++++++||||.+++   +++|.++|+
T Consensus       123 ~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~  199 (394)
T 2ay1_A          123 SDPTWPNHV--SIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAK-KGDMVLLHGCCHNPTGANLTLDQWAEIASILE  199 (394)
T ss_dssp             EESCCHHHH--HHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCC-TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             cCCCChhHH--HHHHHcCCceEEEecccccCCccCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Confidence            999888754  4567789999999985  456789999999997532 24577788999999999986   557888999


Q ss_pred             hcCCCcEEEEecccccCcc-------eec-cCccc-ceEEEecCCCcccCCCc--ceEEEe---cHHHHHHhccCCCCcc
Q 015729          165 EYRHPALFLVDGVSSICAI-------DFR-MDEWG-IDVALTGSQKALSLPTG--MGIVCA---SPKALEASKTAKSVRV  230 (401)
Q Consensus       165 ~~~~~~~li~D~a~~~~~~-------~~~-~~~~~-~di~~~s~~K~l~g~~g--~G~l~~---~~~~~~~~~~~~~~~~  230 (401)
                      +  +|+++|+|++|+.+..       ++. ....+ .++++.|.+|+++ ++|  +|++++   +++..+.+...     
T Consensus       200 ~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~~~~~~~~~~~~~l~~~-----  271 (394)
T 2ay1_A          200 K--TGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFG-IYRERTGCLLALCADAATRELAQGA-----  271 (394)
T ss_dssp             H--HTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTT-CGGGCEEEEEEECSSHHHHHHHHHH-----
T ss_pred             H--CCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCc-CcCCccceEEEEeCCHHHHHHHHHH-----
Confidence            9  9999999999986432       111 22223 3577889999984 444  599998   67654443210     


Q ss_pred             ccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHH-----HHhcHHHHHHHHHHHHHHHHHHHHHcC----CccccCCC
Q 015729          231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI-----FEEGLENVIERHRRLGKATRLAVEAWG----LKNCTQKE  301 (401)
Q Consensus       231 ~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~-----~~~g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~  301 (401)
                             ........  ..+++...++++.++++..     ...++++.+++++++++++.+.|++++    +.+..+  
T Consensus       272 -------~~~~~~~~--~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--  340 (394)
T 2ay1_A          272 -------MAFLNRQT--YSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAE--  340 (394)
T ss_dssp             -------HHHHHHTT--TSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHH--
T ss_pred             -------HHHHHhhh--cCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcC--
Confidence                   01000011  1223444455555555532     123467788889999999999998864    555432  


Q ss_pred             ccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                        ..+.++++.+    +...+.+.|.++ ||.+.++        +||++. .++++|+++++++|+++
T Consensus       341 --~~g~~~~~~~----~~~~~~~~l~~~-gi~v~~~--------~Ris~~-~~~~~~i~~~~~~l~~~  392 (394)
T 2ay1_A          341 --HRGMFSRLGA----TPEQVKRIKEEF-GIYMVGD--------SRINIA-GLNDNTIPILARAIIEV  392 (394)
T ss_dssp             --CCSSEEECCC----CHHHHHHHHHHH-CEECCTT--------CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred             --CceEEEeeCC----CHHHHHHHHHhC-CEEecCC--------CeEEee-cCCHhhHHHHHHHHHHc
Confidence              2334555544    345565556555 9998753        599866 47999999999999875

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.95  E-value=3e-27  Score=224.98  Aligned_cols=308  Identities=15%  Similarity=0.112  Sum_probs=218.5

Q ss_pred             ChHHHHHHHccCcCC--CCC-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCC------C-CCeEEE
Q 015729           20 IPDQVIRAMNRNNED--YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS------P-GDRIIS   89 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~~~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~------~-gd~vl~   89 (401)
                      .++++++++.+....  +.. ....+...++++.+++++|.   +++++++||++|+..++.++..      + +++|++
T Consensus        57 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~---~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~  133 (397)
T 2ord_A           57 SHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFG---GKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILS  133 (397)
T ss_dssp             TCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTTS---CEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             CCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhcCC---CeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEE
Confidence            467777777663321  111 12346778999999999974   3499999999999998877542      4 478999


Q ss_pred             EcCCcchHHHHHHHHHcCCc------------EEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccc-cc--
Q 015729           90 FLIGQFSLLWIDQQQRLNFN------------VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV-TN--  154 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~-~~--  154 (401)
                      +++.|++... ..++..|.+            ++.++.+     |+++++++++    +++++|++++++||||. ++  
T Consensus       134 ~~~~yh~~~~-~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~  203 (397)
T 2ord_A          134 AHNSFHGRTL-GSLTATGQPKYQKPFEPLVPGFEYFEFN-----NVEDLRRKMS----EDVCAVFLEPIQGESGIVPATK  203 (397)
T ss_dssp             EBTCCCCSSH-HHHHHSBCHHHHGGGCSCCTTEEEECTT-----CHHHHHHHCC----TTEEEEEECSEECTTTCEECCH
T ss_pred             EcCCcCCCch-hhhhccCChhhccccCCCCCCeeEecCC-----CHHHHHHHhh----cCeEEEEEecccCCCCcccCCH
Confidence            9888776543 234445654            6666643     8999999987    36799999999999999 44  


Q ss_pred             -chHHHHHHhhhcCCCcEEEEecccccCcc---eeccCcc--cceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCC
Q 015729          155 -NLSKVRKLLDEYRHPALFLVDGVSSICAI---DFRMDEW--GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV  228 (401)
Q Consensus       155 -~l~~i~~l~~~~~~~~~li~D~a~~~~~~---~~~~~~~--~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~  228 (401)
                       ++++|.++|++  +|+++|+|++|+....   +......  .+|++++  +|+++++.++|++++++++. .+....  
T Consensus       204 ~~l~~l~~l~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~s~--sK~~~~G~r~G~~~~~~~~~-~l~~~~--  276 (397)
T 2ord_A          204 EFLEEARKLCDE--YDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTT--AKGLGGGVPIGAVIVNERAN-VLEPGD--  276 (397)
T ss_dssp             HHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGGTTSCCEEEEECSTTC-CCCTTS--
T ss_pred             HHHHHHHHHHHH--cCCEEEEEecccCCccCccchhhhhhCCCCCeeee--ccccCCCcCeEEEEEchHhc-ccCCCC--
Confidence             58889999999  9999999999972211   1211222  3677755  69998666789999988764 332110  


Q ss_pred             ccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCc
Q 015729          229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSD  306 (401)
Q Consensus       229 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~  306 (401)
                                    .+  ..++.+...++++.++++.+.+   ++..++++++++++.+.|+++  +++......  ..+
T Consensus       277 --------------~~--~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~~g  335 (397)
T 2ord_A          277 --------------HG--TTFGGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVR--GMG  335 (397)
T ss_dssp             --------------SC--CSSTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE--EET
T ss_pred             --------------cC--CCCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEE--EEe
Confidence                          01  1334666677777778876544   357788889999999999876  455322111  123


Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          307 TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       307 ~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .++++.+++..+..++.+.|.++ ||.+.++.    ++++||++....+++|+++++++|+++++++
T Consensus       336 ~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~----~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~  397 (397)
T 2ord_A          336 LMIGIQFREEVSNREVATKCFEN-KLLVVPAG----NNTIRFLPPLTVEYGEIDLAVETLKKVLQGI  397 (397)
T ss_dssp             TEEEEEECTTSCHHHHHHHHHHT-TEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEEECChHHHHHHHHHHHHC-CCEEccCC----CCEEEEECCcCCCHHHHHHHHHHHHHHHhhC
Confidence            56778886555688899999875 99998762    5689999776789999999999999988753

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.95  E-value=8.1e-27  Score=222.25  Aligned_cols=325  Identities=9%  Similarity=-0.020  Sum_probs=214.7

Q ss_pred             CCcccccCCCcCChHHHHHHHccCcC--CCCCccHHHHHHHHHHHHHHHhcCCC-----CceEEe--cCChhHHHHHHHh
Q 015729            8 GKNHLFVPGPVHIPDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIFKTTS-----GTPFLI--PTTGTGAWESALT   78 (401)
Q Consensus         8 ~~~~~~~~~p~~~~~~v~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~g~~~-----~~~i~~--~~g~t~a~~~~~~   78 (401)
                      .+.|++..+|.++.+++.+++.+...  ...++.......++++.++++++...     ++++++  |+|+++|+..++.
T Consensus        35 ~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~  114 (401)
T 7aat_A           35 VGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGAN  114 (401)
T ss_dssp             CCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHH
T ss_pred             eeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHH
Confidence            35566677778887888887765322  11223223345688888888887541     345766  9999999998775


Q ss_pred             cc---CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCC--CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc
Q 015729           79 NT---LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        79 ~~---~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~  153 (401)
                      .+   +++||+|+++.|+|.++.  ..++..|++++.++.+  .++.+|++.+++.+++.+ ++++++++++++||||.+
T Consensus       115 ~l~~~~~~gd~Vlv~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~v~i~~p~NPtG~~  191 (401)
T 7aat_A          115 FLQRFFKFSRDVYLPKPSWGNHT--PIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIP-EKSIILLHACAHNPTGVD  191 (401)
T ss_dssp             HHHHHCTTCCEEEEEESCCTTHH--HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSC-TTCEEEEESSSCTTTCCC
T ss_pred             HHHHhccCCCEEEEcCCCchhHH--HHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCC-CCcEEEEeCCCCCCCCCC
Confidence            54   489999999999888764  5677889999999975  356789999988887632 567899999999999988


Q ss_pred             cc---hHHHHHHhhhcCCCcEEEEecccccCcce-e-------c--cCcccceEEEecCCCcccCCCc--ceEEEe---c
Q 015729          154 NN---LSKVRKLLDEYRHPALFLVDGVSSICAID-F-------R--MDEWGIDVALTGSQKALSLPTG--MGIVCA---S  215 (401)
Q Consensus       154 ~~---l~~i~~l~~~~~~~~~li~D~a~~~~~~~-~-------~--~~~~~~di~~~s~~K~l~g~~g--~G~l~~---~  215 (401)
                      ++   +++|.++|++  +|+++|+|++|...... .       .  .......+++.|.||.++ .+|  +|++++   +
T Consensus       192 ~~~~~l~~i~~~~~~--~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~-~~G~RiG~l~~~~~~  268 (401)
T 7aat_A          192 PRQEQWKELASVVKK--RNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMG-LYGERAGAFTVICRD  268 (401)
T ss_dssp             CCHHHHHHHHHHHHH--TTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC-CGGGCEEEEEEECSS
T ss_pred             CCHHHHHHHHHHHHh--CCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccc-cccCceEEEEEEeCC
Confidence            76   6778889999  99999999998754321 1       0  122345788999999984 555  698876   5


Q ss_pred             HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHH--HH---HhcHHHHHHHHHHHHHHHHHHHH
Q 015729          216 PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL--IF---EEGLENVIERHRRLGKATRLAVE  290 (401)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~--~~---~~g~~~~~~~~~~~~~~l~~~L~  290 (401)
                      ++..+.+...        +.......      ..+++......+..++..  +.   ...+++.+++++++++++.+.|+
T Consensus       269 ~~~~~~~~~~--------~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~  334 (401)
T 7aat_A          269 AEEAKRVESQ--------LKILIRPM------YSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLK  334 (401)
T ss_dssp             HHHHHHHHHH--------HHHHHHHH------HSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH--------HHHHHHhc------cCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5533222110        00000000      112333322222222211  10   22356778889999999999999


Q ss_pred             HcC----CccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHH
Q 015729          291 AWG----LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGV  366 (401)
Q Consensus       291 ~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i  366 (401)
                      +++    +.+..+    ..+.++++.+    +.+.+ ..|.+++||.+.++        +||++.. .+++++++++++|
T Consensus       335 ~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~-~~ll~~~gi~v~~~--------~Ris~~~-~~~~~i~~~~~~l  396 (401)
T 7aat_A          335 KEGSSHNWQHITD----QIGMFCFTGL----KPEQV-ERLTKEFSIYMTKD--------GRISVAG-VASSNVGYLAHAI  396 (401)
T ss_dssp             HTTCCSCCHHHHH----CCSSEEECCC----CHHHH-HHHHHHHCEECCTT--------CEEEGGG-CCTTTHHHHHHHH
T ss_pred             hcCCCCCCceecC----CcceEEecCC----CHHHH-HHHHHhCCEeccCC--------CeEEecc-CChhhHHHHHHHH
Confidence            875    443332    2344554433    44444 55555559998633        5897765 5666699999999


Q ss_pred             HHHH
Q 015729          367 EMIL  370 (401)
Q Consensus       367 ~~~l  370 (401)
                      ++++
T Consensus       397 ~~~~  400 (401)
T 7aat_A          397 HQVT  400 (401)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8875

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.95  E-value=7.1e-27  Score=222.95  Aligned_cols=307  Identities=12%  Similarity=0.066  Sum_probs=218.1

Q ss_pred             hHHHHHHHccCcCC--CC-CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCC-------CC-CeEEE
Q 015729           21 PDQVIRAMNRNNED--YR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS-------PG-DRIIS   89 (401)
Q Consensus        21 ~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~-------~g-d~vl~   89 (401)
                      ++.+.+++.+....  +. .....+...++++.+++++|.+   ++++++||++|++.++..+..       +| |+|++
T Consensus        57 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~---~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~  133 (406)
T 4adb_A           57 HPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFAD---RVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVA  133 (406)
T ss_dssp             CHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHSSCS---EEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEE
T ss_pred             CHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhCCCC---eEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence            56677666654322  11 1123456789999999999765   499999999999999877653       55 99999


Q ss_pred             EcCCcchHHHHHHHHHcC------------CcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccccc---
Q 015729           90 FLIGQFSLLWIDQQQRLN------------FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN---  154 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~---  154 (401)
                      .+++|++.... .....+            .++..++.+     |+++++++++    +++++++++ |+||+|.+.   
T Consensus       134 ~~~~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~----~~~~~v~~~-p~np~g~~~~~~  202 (406)
T 4adb_A          134 FKNAFHGRTLF-TVSAGGQPAYSQDFAPLPADIRHAAYN-----DINSASALID----DSTCAVIVE-PIQGEGGVVPAS  202 (406)
T ss_dssp             ETTCCCCSSHH-HHHHSSCGGGTGGGCSCCSSEEEECTT-----CHHHHHTTCS----TTEEEEEEC-SEETTTTSEECC
T ss_pred             ECCCcCCCcHH-HhhccCCccccccCCCCCCCceEeCCC-----cHHHHHHHhc----CCeEEEEEe-CCcCCCCCccCC
Confidence            99988876522 122222            244444433     7999999886    467899998 889998765   


Q ss_pred             --chHHHHHHhhhcCCCcEEEEecccccCcc---e--eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCC
Q 015729          155 --NLSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS  227 (401)
Q Consensus       155 --~l~~i~~l~~~~~~~~~li~D~a~~~~~~---~--~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~  227 (401)
                        ++++|.++|++  +|+++|+|++|+....   +  .+.....+|++++  +|+++++.++|++++++++.+.+.....
T Consensus       203 ~~~l~~l~~l~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~t~--sK~~~~G~r~G~~~~~~~~~~~~~~~~~  278 (406)
T 4adb_A          203 NAFLQGLRELCNR--HNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTT--AKALGGGFPVGALLATEECARVMTVGTH  278 (406)
T ss_dssp             HHHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGGTTSCCEEEEECHHHHHTCCTTSS
T ss_pred             HHHHHHHHHHHHH--cCCEEEEeccccCCCccchhHHHHhcCCCCCEEEe--chhhcCCCCeEEEEEcHHHHhhhccCCc
Confidence              58899999999  9999999999962211   1  1222334677765  7999755568999999998887764321


Q ss_pred             CccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcC--CccccCCCccCC
Q 015729          228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG--LKNCTQKEEWFS  305 (401)
Q Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~  305 (401)
                                        ...++.+...++++.++++.+..   ++..++++++++++.+.|++++  +.....  ....
T Consensus       279 ------------------~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~~~  335 (406)
T 4adb_A          279 ------------------GTTYGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYGLFSE--VRGL  335 (406)
T ss_dssp             ------------------CCSSTTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEE--EEEE
T ss_pred             ------------------CCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceE--EEEE
Confidence                              11334666666777777775533   5678888899999999998752  222111  1123


Q ss_pred             ceeEEEEcCCCC--CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          306 DTVTAVIVPSHI--NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       306 ~~~~~~~~~~~~--~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +.++++.+++..  +..++.+.|.++ ||.+.++.    ++++|+++....+++|+++++++|+++++++
T Consensus       336 g~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~----~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~  400 (406)
T 4adb_A          336 GLLIGCVLNADYAGQAKQISQEAAKA-GVMVLIAG----GNVVRFAPALNVSEEEVTTGLDRFAAACEHF  400 (406)
T ss_dssp             TTEEEEEECTTTTTCHHHHHHHHHHT-TEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEeCCcHHHHHHHHHHHHHC-CcEEeecC----CCeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            457778886532  578999999877 99988753    5789998777889999999999999998765

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.95  E-value=5.5e-27  Score=226.14  Aligned_cols=323  Identities=16%  Similarity=0.086  Sum_probs=215.9

Q ss_pred             ChHHHHHHHccCcCC--CC--CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--CCCCCeEEEEcCC
Q 015729           20 IPDQVIRAMNRNNED--YR--SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIG   93 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~~~gd~vl~~~~~   93 (401)
                      .++.+++++.+....  +.  .....+...++++.++++++...++++++++||++|++.++...  +.++++|++.+++
T Consensus        60 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~  139 (439)
T 3dxv_A           60 GHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGA  139 (439)
T ss_dssp             SCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTC
T ss_pred             CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            456666666553321  11  22345778899999999986544345999999999999998764  3467889999998


Q ss_pred             cchHHHHHHHHHcCCc--------------EEEEeCCCCCCC-----ChHHHHHHHhccCCCCceEEEEEecCCCccccc
Q 015729           94 QFSLLWIDQQQRLNFN--------------VDVVESDWGEGA-----KLDVLASKLAADTAHTIKAICIVHNETATGVTN  154 (401)
Q Consensus        94 ~~~~~~~~~~~~~g~~--------------~~~v~~~~~~~~-----d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~  154 (401)
                      ||+..... ....+..              +..++.+.....     |+++|++++++...+++++++++++++++|.+.
T Consensus       140 yhg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~  218 (439)
T 3dxv_A          140 YHGCTVGS-MAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIV  218 (439)
T ss_dssp             CCCSSHHH-HCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBC
T ss_pred             CCCCcHHH-HhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCcc
Confidence            87765321 1111211              122333221111     689999999422115678999999999999998


Q ss_pred             c----hHHHHHHhhhcCCCcEEEEecccccCc-----ceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccC
Q 015729          155 N----LSKVRKLLDEYRHPALFLVDGVSSICA-----IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTA  225 (401)
Q Consensus       155 ~----l~~i~~l~~~~~~~~~li~D~a~~~~~-----~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~  225 (401)
                      +    +++|.++|++  +|+++|+|++|+...     ...+.....+|+++  .+|+++++.++|++++++++.+.+...
T Consensus       219 ~~~~~l~~l~~l~~~--~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~s--~sK~~~~G~riG~~~~~~~~~~~~~~~  294 (439)
T 3dxv_A          219 PPDGFLRKFADICRA--HGILVVCDEVKVGLARSGRLHCFEHEGFVPDILV--LGKGLGGGLPLSAVIAPAEILDCASAF  294 (439)
T ss_dssp             CCTTHHHHHHHHHHH--TTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEEE--ECGGGGTTSCCEEEEEEHHHHTSCSSS
T ss_pred             CCHHHHHHHHHHHHH--cCCEEEEeccccCCCcCchhhHHHhcCCCCCEEE--EcchhcCCcceEEEEECHHHHhhhcCC
Confidence            8    9999999999  999999999997221     11222233467774  459997655689999999987766542


Q ss_pred             CCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCcc
Q 015729          226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEW  303 (401)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~  303 (401)
                      ..                +  .++ .++..+++..++++.+.+.   ...++.+++.+++++.|.++  .+.......  
T Consensus       295 ~~----------------~--~t~-~~~~~~~aa~aal~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--  350 (439)
T 3dxv_A          295 AM----------------Q--TLH-GNPISAAAGLAVLETIDRD---DLPAMAERKGRLLRDGLSELAKRHPLIGDIR--  350 (439)
T ss_dssp             SC----------------C--TTT-TCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTEEEEE--
T ss_pred             Cc----------------C--CCc-ccHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE--
Confidence            10                1  133 5666667777778776553   35666677777777777664  122211111  


Q ss_pred             CCceeEEEEc--------CCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          304 FSDTVTAVIV--------PSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       304 ~~~~~~~~~~--------~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      ..+.++++.+        |++.+..++.+.|.++ ||.+.++..  .++++||++....+++|+++++++|+++++++.
T Consensus       351 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~  426 (439)
T 3dxv_A          351 GRGLACGMELVCDRQSREPARAETAKLIYRAYQL-GLVVYYVGM--NGNVLEFTPPLTITETDIHKALDLLDRAFSELS  426 (439)
T ss_dssp             EETTEEEEEEEEETTTTEECHHHHHHHHHHHHHH-TEECEEEST--TSCEEEECCCTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred             EEEEEEEEEEecCccccCCCHHHHHHHHHHHHHC-CcEEeecCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            1234566665        3323356788888877 999988743  257899988878899999999999999998763

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.95  E-value=7.9e-26  Score=217.42  Aligned_cols=310  Identities=17%  Similarity=0.086  Sum_probs=215.5

Q ss_pred             ChHHHHHHHccCcCC--CCC-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC---------CCC-Ce
Q 015729           20 IPDQVIRAMNRNNED--YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL---------SPG-DR   86 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~~~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~---------~~g-d~   86 (401)
                      .+|.+++++.+....  +.. ....+...++++.+++++|.   +.+++++||++|++.++....         .+| |+
T Consensus        82 ~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~---~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~  158 (433)
T 1z7d_A           82 CHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGY---DKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAK  158 (433)
T ss_dssp             TCHHHHHHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCE
T ss_pred             CCHHHHHHHHHHHHhCCCccCCcCCHHHHHHHHHHHhhcCC---CeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCe
Confidence            667777777764432  111 12345678899999999974   349999999999999886532         467 99


Q ss_pred             EEEEcCCcchHHHHHHHHHcC------------CcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccccc
Q 015729           87 IISFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTN  154 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~  154 (401)
                      |++.+++|++..... ....|            .++..++.+     |+++++++++.   +++++|+++++++++|.+.
T Consensus       159 vi~~~~~yhg~~~~~-~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~---~~~~~vi~ep~~~~~G~~~  229 (433)
T 1z7d_A          159 IVVCKNNFSGRTLGC-ISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEELKD---PNVCAFIVEPIQGEAGVIV  229 (433)
T ss_dssp             EEEETTC---------------------------CEEEECTT-----CHHHHHHHHTS---TTEEEEEECSSBSTTTSBC
T ss_pred             EEEEeCCcCCcchhh-hcccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHhCC---CCEEEEEEECCCCCCCccC
Confidence            999999887754211 11112            344555542     89999999952   4678888887778899876


Q ss_pred             ----chHHHHHHhhhcCCCcEEEEecccccCcc---e--eccCcccceEEEecCCCcccCC-CcceEEEecHHHHHHhcc
Q 015729          155 ----NLSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKT  224 (401)
Q Consensus       155 ----~l~~i~~l~~~~~~~~~li~D~a~~~~~~---~--~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~  224 (401)
                          ++++|.++|++  +|+++|+|++|+....   .  ++.....+|++++  +|+++++ .++|++++++++.+.+..
T Consensus       230 ~~~~~l~~l~~l~~~--~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~--sK~l~~G~~~~G~v~~~~~~~~~l~~  305 (433)
T 1z7d_A          230 PSDNYLQGVYDICKK--YNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILL--GKALSGGHYPISAVLANDDIMLVIKP  305 (433)
T ss_dssp             CCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTSSCCEEEEECHHHHTTCCT
T ss_pred             CCHHHHHHHHHHHHH--cCCEEEEecCccCCCcCCcchhhHhcCCCCCEEEE--CccccCCCCCeEEEEECHHHHhhhcc
Confidence                68999999999  9999999999973211   1  1222235787754  5999765 468999999998776653


Q ss_pred             CCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCc
Q 015729          225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEE  302 (401)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~  302 (401)
                      ...                +  ..++.++..+++..++++.+.++   ...++..++.+++++.|+++  +++...... 
T Consensus       306 ~~~----------------~--~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-  363 (433)
T 1z7d_A          306 GEH----------------G--STYGGNPLAASICVEALNVLINE---KLCENAEKLGGPFLENLKRELKDSKIVRDVR-  363 (433)
T ss_dssp             TCC----------------C--CTTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCTTEEEEE-
T ss_pred             ccc----------------c--ccCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-
Confidence            210                1  13346667777888888877654   36777888899999999886  665432111 


Q ss_pred             cCCceeEEEEcCCC-CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          303 WFSDTVTAVIVPSH-INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       303 ~~~~~~~~~~~~~~-~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                       ..+.++++.+++. .+..++.+.|.++ ||.+.++    .++++|+++...++++|+++++++|+++++++
T Consensus       364 -~~g~~~~i~~~~~~~~~~~~~~~l~~~-Gv~v~~~----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  429 (433)
T 1z7d_A          364 -GKGLLCAIEFKNELVNVLDICLKLKEN-GLITRDV----HDKTIRLTPPLCITKEQLDECTEIIVKTVKFF  429 (433)
T ss_dssp             -EETTEEEEEECTTTCCHHHHHHHHHHT-TEECCEE----TTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             -eeeeEEEEEEccChhHHHHHHHHHHHC-CeEEecC----CCCEEEEECCcCCCHHHHHHHHHHHHHHHHHH
Confidence             2345777888643 4577899999876 9998865    25789998877789999999999999998765

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.95  E-value=4.2e-27  Score=223.76  Aligned_cols=314  Identities=11%  Similarity=0.001  Sum_probs=212.8

Q ss_pred             cCChHHHHHHHccCcC--CCCCccHHHHHHHHHHHHHHHhcCC-----CCceEEe--cCChhHHHHHHHhcc--CCCCCe
Q 015729           18 VHIPDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIFKTT-----SGTPFLI--PTTGTGAWESALTNT--LSPGDR   86 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~g~~-----~~~~i~~--~~g~t~a~~~~~~~~--~~~gd~   86 (401)
                      .+.++.+.+++.+...  ....+.......++++.++++++..     .++++++  ++|+++|++.++..+  +.+||+
T Consensus        43 ~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~  122 (396)
T 2q7w_A           43 TPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKR  122 (396)
T ss_dssp             CCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCE
T ss_pred             ccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCE
Confidence            4567888888876421  1112323344678999999988432     1345887  999999999987553  469999


Q ss_pred             EEEEcCCcchHHHHHHHHHcCCcEEEEeCC--CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHH
Q 015729           87 IISFLIGQFSLLWIDQQQRLNFNVDVVESD--WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRK  161 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~  161 (401)
                      |+++.++|+++.  ..++..|++++.++.+  .++.+|++++++.+++.+ .+++++++++++||||.+++   +++|.+
T Consensus       123 Vl~~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~v~~~~p~nptG~~~~~~~l~~l~~  199 (396)
T 2q7w_A          123 VWVSNPSWPNHK--SVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQ-AGDVVLFHGCCHNPTGIDPTLEQWQTLAQ  199 (396)
T ss_dssp             EEEEESCCTHHH--HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCC-TTCEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred             EEEcCCCchhHH--HHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCC-CCCEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence            999999888764  5567789999999985  456789999999997532 24678888999999999986   457889


Q ss_pred             HhhhcCCCcEEEEecccccCcce-------ec-cCc-ccceEEEecCCCcccCCCc--ceEEEe---cHHHHHHhccCCC
Q 015729          162 LLDEYRHPALFLVDGVSSICAID-------FR-MDE-WGIDVALTGSQKALSLPTG--MGIVCA---SPKALEASKTAKS  227 (401)
Q Consensus       162 l~~~~~~~~~li~D~a~~~~~~~-------~~-~~~-~~~di~~~s~~K~l~g~~g--~G~l~~---~~~~~~~~~~~~~  227 (401)
                      +|++  +|+++|+|++|+.+...       +. ... ...++++.|.+|+++ ++|  +|++++   +++..+.+...  
T Consensus       200 ~~~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~~~~~~~~~~~~~~~~~--  274 (396)
T 2q7w_A          200 LSVE--KGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFG-LYNERVGACTLVAADSETVDRAFSQ--  274 (396)
T ss_dssp             HHHH--HTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTT-CGGGCCEEEEEECSSHHHHHHHHHH--
T ss_pred             HHHH--CCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccc-ccccccceEEEEcCCHHHHHHHHHH--
Confidence            9999  99999999998754321       11 111 135688999999884 445  699987   56443332210  


Q ss_pred             CccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHH-----HHhcHHHHHHHHHHHHHHHHHHHHHcC----Ccccc
Q 015729          228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI-----FEEGLENVIERHRRLGKATRLAVEAWG----LKNCT  298 (401)
Q Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~-----~~~g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~  298 (401)
                                ........  ..+++...+.++.++++..     ...++++.+++++++++++.+.|++++    +++..
T Consensus       275 ----------~~~~~~~~--~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  342 (396)
T 2q7w_A          275 ----------MKAAIRAN--YSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFII  342 (396)
T ss_dssp             ----------HHHHHHTT--TSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHH
T ss_pred             ----------HHHHHhhc--cCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceec
Confidence                      00000011  2234555555555655432     123466778888999999999999876    55544


Q ss_pred             CCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      +    ..+.++++.+    +...+...|.++ ||.+.++        +||++.. .+++++++++++|+++
T Consensus       343 ~----~~~~~~~~~~----~~~~~~~~l~~~-gv~v~~~--------~Ris~~~-~~~e~i~~~~~~l~~~  395 (396)
T 2q7w_A          343 K----QNGMFSFSGL----TKEQVLRLREEF-GVYAVAS--------GRVNVAG-MTPDNMAPLCEAIVAV  395 (396)
T ss_dssp             H----CCSSEEECCC----CHHHHHHHHHHH-CEECCTT--------CEEEGGG-CCTTTHHHHHHHHHHH
T ss_pred             C----CCceEEEecC----CHHHHHHHHHhc-CeeecCC--------ceEEEee-cCHHHHHHHHHHHHhc
Confidence            3    2344555544    344555555444 9998753        5998764 5999999999999875

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.95  E-value=7.5e-27  Score=220.28  Aligned_cols=305  Identities=9%  Similarity=0.080  Sum_probs=206.1

Q ss_pred             HHHHHHHHHH-HHHhcCCCCceEEecCChhHHHHHHHhcc-CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCC-C
Q 015729           42 ALTKTLLEDI-KKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-G  118 (401)
Q Consensus        42 ~~~~~l~~~l-a~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~  118 (401)
                      ....++++.+ ++++|. . ..+++++|||+|+..++.++ +++||+|+++.++|+++.  ..++..|++++.+++++ +
T Consensus        36 ~~~~~l~~~~~a~~~g~-~-~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~--~~~~~~G~~~~~v~~~~~~  111 (377)
T 3ju7_A           36 PINQRFEQTIMSGFFQN-R-GAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATP--LAAIWCGLEPYFIDISIDD  111 (377)
T ss_dssp             HHHHHHHHHHHHHTSTT-C-SEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHH--HHHHHTTCEEEEECBCTTT
T ss_pred             HHHHHHHHHHHHHHhCC-C-CeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHH--HHHHHcCCEEEEEecCCcc
Confidence            5578999999 999992 2 23889999999999999886 899999999999888764  45677899999999874 5


Q ss_pred             CCCChHHHHHHH-hccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcc-----cc
Q 015729          119 EGAKLDVLASKL-AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW-----GI  192 (401)
Q Consensus       119 ~~~d~~~le~~~-~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~-----~~  192 (401)
                      +.+|++++++++ +.+  .++++|+   ++|++|...|+++|.++|+   +|++||+|++|+.|... +....     .+
T Consensus       112 ~~~d~~~l~~~i~~~~--~~tk~v~---~~~~~G~~~~~~~i~~la~---~~~~vi~D~a~a~g~~~-~~~~~g~~~~d~  182 (377)
T 3ju7_A          112 WYMDKTVLWDKIEELK--EEVAIVV---PYATFGSWMNLEEYEELEK---KGVPVVVDAAPGFGLMN-GGMHYGQDFSGM  182 (377)
T ss_dssp             CSBCHHHHHHHHHHHG--GGEEEEC---CBCGGGBCCCCHHHHHHHH---TTCCBEEECTTCTTCEE-TTEETTTTCSSE
T ss_pred             CCcCHHHHHHHHhcCC--CCceEEE---EECCCCCccCHHHHHHHHh---cCCEEEEECCCccCCeE-CCEeccCCCCcE
Confidence            689999999988 432  1267776   4578999999999999998   68999999999988642 21122     24


Q ss_pred             eEEEecCCCcccCCCcceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcH
Q 015729          193 DVALTGSQKALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGL  271 (401)
Q Consensus       193 di~~~s~~K~l~g~~g~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~  271 (401)
                      ++++++.+|+++++. .|+++.+ +++.+++...........+    .....|.  ....+.     +.+++.......+
T Consensus       183 ~~~S~~~~K~l~~g~-gG~~~~~~~~l~~~~~~~~~~g~~~~~----~~~~~g~--~~~~~~-----~~aa~~~~~l~~l  250 (377)
T 3ju7_A          183 IIYSFHATKPFGIGE-GGLIYSKNEEDIQRIKRMGNFGFDTNR----ECTMMGF--NCKMSE-----YAAAIGIATMKKW  250 (377)
T ss_dssp             EEEECBTTSSSCCBS-CEEEEESCHHHHHHHHHHTBTTBCTTS----CBCSSCC--BCCCCH-----HHHHHHHHHHHTH
T ss_pred             EEEECCCCCcCCCCC-cEEEEECCHHHHHHHHHHHhcCCCCCC----ceeeccc--cCCCCH-----HHHHHHHHHHHHH
Confidence            555666889997644 3666654 5555555432211100000    0000111  112222     2333333233356


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcC-Ccc-ccCCCccCCc-eeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC-C------
Q 015729          272 ENVIERHRRLGKATRLAVEAWG-LKN-CTQKEEWFSD-TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK-V------  341 (401)
Q Consensus       272 ~~~~~~~~~~~~~l~~~L~~~g-~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~-~------  341 (401)
                      +...++.+++++++.+.|.+++ +.+ ..+......+ .++.+.++++.+.+++.+.|.++ ||.++.++.. .      
T Consensus       251 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gI~~~~~~~~~~~~~~~~  329 (377)
T 3ju7_A          251 DDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEVRNKQVIEDLKKQ-KIEARLYFSPSCHQQVLF  329 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTSCHHHHHHHHHTT-TBCCBCTTSSCGGGSGGG
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChhhHHHHHHHHHHC-CCceecccCCccccchhh
Confidence            7788889999999999999873 322 1221111222 23456666555688999999876 9998776521 0      


Q ss_pred             C--------------CcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          342 A--------------GKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       342 ~--------------~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .              ...+|+.++..+|++|++++++.|++.+..
T Consensus       330 ~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~  374 (377)
T 3ju7_A          330 RNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS  374 (377)
T ss_dssp             TTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred             hcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            0              134999999899999999999999877643

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.95  E-value=2e-27  Score=233.95  Aligned_cols=342  Identities=11%  Similarity=0.032  Sum_probs=218.8

Q ss_pred             CcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHh----c--CC--CCceEEecCChhHHHHHHHhc-----cCCC
Q 015729           17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF----K--TT--SGTPFLIPTTGTGAWESALTN-----TLSP   83 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~--~~~~i~~~~g~t~a~~~~~~~-----~~~~   83 (401)
                      |...++.+++++.+.......+.......++++.+++++    +  .+  +++++++|+|+++|+..++.+     ++++
T Consensus       113 ~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~  192 (533)
T 3f6t_A          113 LGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKK  192 (533)
T ss_dssp             TCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCT
T ss_pred             CCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCC
Confidence            333456666655543321111111122345555555555    2  22  235699999999999999887     7899


Q ss_pred             CCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCC----CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchH--
Q 015729           84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW----GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS--  157 (401)
Q Consensus        84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~----~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~--  157 (401)
                      ||+|+++.++|.++.  ..++..|++++.++++.    ++.+|+++++++++    ++++++++++|+||||.+++.+  
T Consensus       193 gd~Viv~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~----~~~k~v~l~~p~NPtG~~~~~~~l  266 (533)
T 3f6t_A          193 GDKIAINEPIFTPYL--RIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKD----PSIKALIVVNPTNPTSKEFDTNAL  266 (533)
T ss_dssp             TCEEEEESSCCHHHH--TSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSC----TTEEEEEEESSCTTTCBCCCHHHH
T ss_pred             cCEEEEcCCCcHHHH--HHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhC----CCCeEEEEeCCCCCCccccCHHHH
Confidence            999999999887764  45667888999998853    46789999999886    4679999999999999999876  


Q ss_pred             -HHHHHhh-hcCCCcEEEEecccccCcce---eccCcccceEEEecCCCcccCCCc--ceEEEecHH-----HHHHhccC
Q 015729          158 -KVRKLLD-EYRHPALFLVDGVSSICAID---FRMDEWGIDVALTGSQKALSLPTG--MGIVCASPK-----ALEASKTA  225 (401)
Q Consensus       158 -~i~~l~~-~~~~~~~li~D~a~~~~~~~---~~~~~~~~di~~~s~~K~l~g~~g--~G~l~~~~~-----~~~~~~~~  225 (401)
                       +|.++|+ +  +|+++|+|++|+.....   +.....+.++++.|.+|.++ .+|  +|+++++++     +++.+.+.
T Consensus       267 ~~l~~la~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~RiG~l~~~~~~~~~~li~~l~~~  343 (533)
T 3f6t_A          267 NAIKQAVEKN--PKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFG-CTGWRLGVIALNEKNVFDDNIAHLDKV  343 (533)
T ss_dssp             HHHHHHHHHC--TTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHT-CGGGCEEEEEEESSCHHHHHHHTSCHH
T ss_pred             HHHHHHHHhC--CCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCC-CcccceEEEEECcHHHHHHHHHhcchh
Confidence             6777777 6  89999999998743321   11112356799999999884 555  799998876     43333110


Q ss_pred             C------------CCccccchHH-HHHHhh-cCCCCCCCCcHHHHHH-HHHHHHHHH--------HhcHHHHHHHHHHHH
Q 015729          226 K------------SVRVFFDWKD-YIKFYN-LGTFWPYTPSIQLLYG-LRAALDLIF--------EEGLENVIERHRRLG  282 (401)
Q Consensus       226 ~------------~~~~~~~~~~-~~~~~~-~g~~~~~~~~~~~~~a-~~~al~~~~--------~~g~~~~~~~~~~~~  282 (401)
                      .            ....-..+.+ ....+. ...+...+++....++ ...++..+.        ...+++.++++++++
T Consensus       344 ~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~  423 (533)
T 3f6t_A          344 ELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERY  423 (533)
T ss_dssp             HHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHH
T ss_pred             hHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHH
Confidence            0            0000000000 000001 1111122344433332 211334332        112567788888888


Q ss_pred             HHHHHHHHHcCCccccCCCccCCceeEEEEcCC------C----------CCHHHHHHHHHhhCCeEEccCCCCC-CCcE
Q 015729          283 KATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS------H----------INSSEIVRRAWQRYNLSLGLGLNKV-AGKV  345 (401)
Q Consensus       283 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~------~----------~~~~~l~~~L~~~~~i~v~~g~~~~-~~~~  345 (401)
                      +.+.+.|. +++.+..+    ..+.++++.++.      +          .+..+++..+.+++||.+.+|..+. ..++
T Consensus       424 ~~l~~~L~-~~~~~~~~----~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~  498 (533)
T 3f6t_A          424 DQLHDAMQ-APKDETDT----NTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGE  498 (533)
T ss_dssp             HHHHHHHT-CCCCCSTT----BCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTE
T ss_pred             HHHHHhcC-CCccccCC----CceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCE
Confidence            99988886 66554433    344567777642      1          3556777777767799999985432 3568


Q ss_pred             EEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          346 FRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       346 ~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +||++ +.++++++++++++|+++++++
T Consensus       499 iRls~-a~~~~e~i~~~i~~L~~~l~~~  525 (533)
T 3f6t_A          499 LRVSQ-ANLPTEDYALIGKQVLELLKEY  525 (533)
T ss_dssp             EEEES-SSSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEE-eeCCHHHHHHHHHHHHHHHHHH
Confidence            99987 4478999999999999998764

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.95  E-value=2.8e-26  Score=212.84  Aligned_cols=283  Identities=12%  Similarity=0.078  Sum_probs=200.4

Q ss_pred             HHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCCh
Q 015729           46 TLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKL  123 (401)
Q Consensus        46 ~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~  123 (401)
                      ++++.+++++|.+  + .+++++|++|+..++.+++++||+|+++.+.|+++.  +...++..|++++.++.     .|+
T Consensus         2 ~l~~~la~~~g~~--~-~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~   73 (331)
T 1pff_A            2 ALEGKIAKLEHAE--A-CAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM-----AVP   73 (331)
T ss_dssp             HHHHHHHHHHTCS--E-EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-----TST
T ss_pred             hHHHHHHHHhCCC--e-EEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-----CCH
Confidence            6899999999986  3 455566699999999888999999999999988764  22235668999998875     378


Q ss_pred             HHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcc
Q 015729          124 DVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKAL  203 (401)
Q Consensus       124 ~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l  203 (401)
                      +++++.++    ++++++++++++||||.+.|+++|.++|++. +|+++|+|++|+.+....+. ..++|++++|.||++
T Consensus        74 ~~l~~~i~----~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~-~~~~li~D~a~~~~~~~~~~-~~~~d~~~~s~~K~~  147 (331)
T 1pff_A           74 GNIEKHLK----PNTRIVYFETPANPTLKVIDIEDAVKQARKQ-KDILVIVDNTFASPILTNPL-DLGVDIVVHSATKYI  147 (331)
T ss_dssp             THHHHTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHTTS-SSCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTT
T ss_pred             HHHHHhhc----CCCeEEEEECCCCCcCcccCHHHHHHHHhhh-cCCEEEEECCCcccccCChh-hcCCcEEEEECcccc
Confidence            89999886    3679999999999999999999999999973 58999999999877643333 467999999999999


Q ss_pred             cCCCc--ceEEEecH-HHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 015729          204 SLPTG--MGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRR  280 (401)
Q Consensus       204 ~g~~g--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~  280 (401)
                      +++.+  .|++++++ ++.+.+......                 ++..+.+....+++..+++.+     ....++..+
T Consensus       148 ~~~~~r~~G~~~~~~~~~~~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~  205 (331)
T 1pff_A          148 NGHTDVVAGLVCSRADIIAKVKSQGIKD-----------------ITGAIISPHDAWLITRGTLTL-----DMRVKRAAE  205 (331)
T ss_dssp             SSSSSCCCEEEEECHHHHHHHHHTCCCC-----------------CCCCCCCHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred             CCCCCceEEEEEeCcHHHHHHHHHHHHh-----------------hcCCCCCHHHHHHHHcCcchH-----HHHHHHHHH
Confidence            76654  69999998 887777653211                 012245554444444444432     233444555


Q ss_pred             HHHHHHHHHHHc-C--------------CccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCC-------
Q 015729          281 LGKATRLAVEAW-G--------------LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGL-------  338 (401)
Q Consensus       281 ~~~~l~~~L~~~-g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~-------  338 (401)
                      +.+.+.+.|++. .              +++..+.. ...+.++.+.++   +..++.+.|.+ .||.++...       
T Consensus       206 ~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~l~~-~gI~~~~~s~g~~~sl  280 (331)
T 1pff_A          206 NAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM-KMFGSMIAFDVD---GLEKAKKVLDN-CHVVSLAVSLGGPESL  280 (331)
T ss_dssp             HHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHC-SSCCSEEEEECS---SHHHHHHHHHT-CSSSEECSSCCSSSCE
T ss_pred             HHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhC-CCCceEEEEEEC---CHHHHHHHHHh-CCCceeccCCCCccee
Confidence            666666666543 1              11111111 123457778874   56677777765 488765431       


Q ss_pred             --C-----------------CCCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          339 --N-----------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       339 --~-----------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                        .                 ....+.+||++...+++++++.++++|+++
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~  330 (331)
T 1pff_A          281 IQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             EECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred             eecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence              1                 012478999999888999999999988753

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.95  E-value=2.9e-26  Score=218.02  Aligned_cols=309  Identities=13%  Similarity=0.146  Sum_probs=216.8

Q ss_pred             ChHHHHHHHccCcCC--C-CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC-------CCCCeEEE
Q 015729           20 IPDQVIRAMNRNNED--Y-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SPGDRIIS   89 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~-~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~-------~~gd~vl~   89 (401)
                      .+|++++++.+....  + ......+...++++.+++++|.   +++++++||++|++.++..+.       .++|+|++
T Consensus        53 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~  129 (395)
T 3nx3_A           53 NHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASAL---ERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIA  129 (395)
T ss_dssp             SCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEE
T ss_pred             CCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcCC---CeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEE
Confidence            357777777664322  1 1123356788999999999973   359999999999999886643       45799999


Q ss_pred             EcCCcchHHHHHHH-----------HHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---
Q 015729           90 FLIGQFSLLWIDQQ-----------QRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---  155 (401)
Q Consensus        90 ~~~~~~~~~~~~~~-----------~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---  155 (401)
                      .+++|++.......           ...+.++..++.+     |+++++++++    ++++++++.+++|++|.+.+   
T Consensus       130 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~----~~~~~v~~~~~~~~~G~~~~~~~  200 (395)
T 3nx3_A          130 FKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-----DISSVEKLVN----EKTCAIILESVQGEGGINPANKD  200 (395)
T ss_dssp             ETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----CHHHHHTTCC----TTEEEEEEESEECTTSCEECCHH
T ss_pred             EcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----CHHHHHHhcc----CCeEEEEEeCccCCCCcccCCHH
Confidence            99988876421111           1112355555543     7999999886    35789999998999999877   


Q ss_pred             -hHHHHHHhhhcCCCcEEEEecccc-cCcc--e--eccCcccceEEEecCCCcccCCCcceEEEecHHH-HHHhccCCCC
Q 015729          156 -LSKVRKLLDEYRHPALFLVDGVSS-ICAI--D--FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKA-LEASKTAKSV  228 (401)
Q Consensus       156 -l~~i~~l~~~~~~~~~li~D~a~~-~~~~--~--~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~-~~~~~~~~~~  228 (401)
                       +++|.++|++  +|+++|+|++|+ ++..  .  .+.....+|++++|  |+++++.++|++++++++ .+.+..... 
T Consensus       201 ~l~~l~~l~~~--~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~s--K~~~~G~~~G~~~~~~~~~~~~~~~~~~-  275 (395)
T 3nx3_A          201 FYKALRKLCDE--KDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSA--KALGCGLSVGAFVINQKVASNSLEAGDH-  275 (395)
T ss_dssp             HHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGTTTSCCEEEEECHHHHHHHSCTTCC-
T ss_pred             HHHHHHHHHHH--cCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEec--ccccCCCceEEEEEchhhhhhhcCCccc-
Confidence             8999999999  999999999987 3211  1  12223346777665  888776778999999998 777754311 


Q ss_pred             ccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCc
Q 015729          229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSD  306 (401)
Q Consensus       229 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~  306 (401)
                                     +  .+++.+...+++..++++.+..+.   ..++.+++.+++++.|.++  .+.......  ..+
T Consensus       276 ---------------~--~~~~~~~~~~~aa~aal~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~g  333 (395)
T 3nx3_A          276 ---------------G--STYGGNPLVCAGVNAVFEIFKEEK---ILENVNKLTPYLEQSLDELINEFDFCKKRK--GLG  333 (395)
T ss_dssp             ---------------S--SCBSCCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEE--EET
T ss_pred             ---------------C--CCCCCCHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEE--eEE
Confidence                           1  133466777777788888765543   4555666666666666553  122211111  234


Q ss_pred             eeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          307 TVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       307 ~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .++++.+++..+..++.+.|.++ ||.+.++.    ++++||++....|++|+++++++|++++++
T Consensus       334 ~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  394 (395)
T 3nx3_A          334 FMQGLSLDKSVKVAKVIQKCQEN-ALLLISCG----ENDLRFLPPLILQKEHIDEMSEKLRKALKS  394 (395)
T ss_dssp             TEEEEEECTTSCHHHHHHHHHHT-TEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEeCCcchHHHHHHHHHHC-CCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            57778886655678899999876 99988763    578999888888999999999999999874

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.95  E-value=2.1e-26  Score=221.17  Aligned_cols=322  Identities=16%  Similarity=0.096  Sum_probs=220.7

Q ss_pred             ChHHHHHHHccCcCCC----CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh---ccCCCCCeEEEEcC
Q 015729           20 IPDQVIRAMNRNNEDY----RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT---NTLSPGDRIISFLI   92 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~~----~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~---~~~~~gd~vl~~~~   92 (401)
                      .++.+++++.+.....    ..+...+...++++.|+++++.+.++++++++|+++|++.++.   ++.+++ +|++.++
T Consensus        58 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p  136 (426)
T 1sff_A           58 LHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRS-GTIAFSG  136 (426)
T ss_dssp             TCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETT
T ss_pred             CCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECC
Confidence            4677777777754321    1234457788999999999943333569999999999999887   566776 8999999


Q ss_pred             CcchHHHHHHHHHcCCc-------------EEEEeCCCC-----CCCChHHHHHHHhcc-CCCCceEEEEEecCCCcccc
Q 015729           93 GQFSLLWIDQQQRLNFN-------------VDVVESDWG-----EGAKLDVLASKLAAD-TAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        93 ~~~~~~~~~~~~~~g~~-------------~~~v~~~~~-----~~~d~~~le~~~~~~-~~~~~~~i~~~~~~n~tG~~  153 (401)
                      +|++... ......|.+             ++.++.+.+     +.+|++++++++++. ..+++++|++++.++.||..
T Consensus       137 ~y~~~~~-~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~  215 (426)
T 1sff_A          137 AYHGRTH-YTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFY  215 (426)
T ss_dssp             CCCCSSH-HHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSC
T ss_pred             CcCCCch-HhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcc
Confidence            8876542 123333432             667776531     236899999998731 00246777776543339977


Q ss_pred             cc----hHHHHHHhhhcCCCcEEEEecccccCcc-----eeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhcc
Q 015729          154 NN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKT  224 (401)
Q Consensus       154 ~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~  224 (401)
                      .+    +++|.++|++  +|++||+|++|+....     .++.....+|++  |.+|+++++.++|++++++++.+.+..
T Consensus       216 ~~~~~~l~~l~~l~~~--~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~GlriG~~~~~~~~~~~l~~  291 (426)
T 1sff_A          216 ASSPAFMQRLRALCDE--HGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAGGFPLAGVTGRAEVMDAVAP  291 (426)
T ss_dssp             BCCHHHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGTSSCCEEEEEEHHHHTTSCT
T ss_pred             cCCHHHHHHHHHHHHH--cCCEEEEechhhccCcccchhhhhhcCCCCCEE--EEcccccCCCceEEEEEcHHHHhhhcc
Confidence            66    8999999999  9999999999983211     112222346766  555999754447999999988776643


Q ss_pred             CCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcC--CccccCCCc
Q 015729          225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG--LKNCTQKEE  302 (401)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~  302 (401)
                      ..                  ....++.+...++++.++++.+.+.   ...++..++++++++.|++++  ++......+
T Consensus       292 ~~------------------~~~~~~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  350 (426)
T 1sff_A          292 GG------------------LGGTYAGNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGLLAIAEKHPEIGDVRG  350 (426)
T ss_dssp             TS------------------BCCSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHTCTTEEEEEE
T ss_pred             CC------------------cCcCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence            11                  0113346677777888888877654   356777888888888887752  433211111


Q ss_pred             cCCceeEEEEcC--------CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          303 WFSDTVTAVIVP--------SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       303 ~~~~~~~~~~~~--------~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                        .+.++++.++        ++.+..++.+.|.++ ||.+.++...  ++++||++....+++|+++++++|+++++++
T Consensus       351 --~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~  424 (426)
T 1sff_A          351 --LGAMIAIELFEDGDHNKPDAKLTAEIVARARDK-GLILLSCGPY--YNVLRILVPLTIEDAQIRQGLEIISQCFDEA  424 (426)
T ss_dssp             --ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHT-TEECEEESTT--SCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             --EEEEEEEEEecCccccCCChHHHHHHHHHHHHC-CcEEecCCCC--CCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence              2457778873        223456788888876 9999988542  5789998876789999999999999998754

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.95  E-value=2.6e-25  Score=211.04  Aligned_cols=328  Identities=13%  Similarity=0.075  Sum_probs=224.1

Q ss_pred             ccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-------CCCCC
Q 015729           13 FVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-------LSPGD   85 (401)
Q Consensus        13 ~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-------~~~gd   85 (401)
                      +-.++..+++++++++.+...... +.......++++.+++++|.+.   .++++|||+|+..++.++       +++||
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~~---~i~~~sGt~a~~~al~~~~~~~~~~~~~g~   81 (390)
T 3b8x_A            6 YPLASSTWDDLEYKAIQSVLDSKM-FTMGEYVKQYETQFAKTFGSKY---AVMVSSGSTANLLMIAALFFTKKPRLKKGD   81 (390)
T ss_dssp             BCSCCCCCCHHHHHHHHHHHHHTC-CSSCHHHHHHHHHHHHHHTCSE---EEEESCHHHHHHHHHHHTTSSSSCSCCTTC
T ss_pred             ccCCCCCCCHHHHHHHHHHHHcCC-CCCChHHHHHHHHHHHHHCCCc---EEEECCHHHHHHHHHHHHHhhhhcCCCCcC
Confidence            445788889999998877543211 2234678899999999999862   788899999999999887       78999


Q ss_pred             eEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC-CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhh
Q 015729           86 RIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLD  164 (401)
Q Consensus        86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~  164 (401)
                      +|+++.++|++..  ..++..|++++.++.+++ +.+|++++++++++    +++++++++   ++|...++++|.++|+
T Consensus        82 ~Vi~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~v~~~~---~~g~~~~~~~i~~l~~  152 (390)
T 3b8x_A           82 EIIVPAVSWSTTY--YPLQQYGLRVKFVDIDINTLNIDIESLKEAVTD----STKAILTVN---LLGNPNNFDEINKIIG  152 (390)
T ss_dssp             EEEEESSSCHHHH--HHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT----TEEEEEEEC---GGGCCCCHHHHHHHHT
T ss_pred             EEEECCCCcHHHH--HHHHHcCCEEEEEecCccccCcCHHHHHHHhCc----CCeEEEEEC---CccChhhHHHHHHHHH
Confidence            9999999988775  345678999999999875 78899999999874    568888874   6788899999999999


Q ss_pred             hcCCCcEEEEecccccCcceeccCcccc--eEEEec--CCCcccCCCcceEEEecH-HHHHHhccCCCCccccch-----
Q 015729          165 EYRHPALFLVDGVSSICAIDFRMDEWGI--DVALTG--SQKALSLPTGMGIVCASP-KALEASKTAKSVRVFFDW-----  234 (401)
Q Consensus       165 ~~~~~~~li~D~a~~~~~~~~~~~~~~~--di~~~s--~~K~l~g~~g~G~l~~~~-~~~~~~~~~~~~~~~~~~-----  234 (401)
                      +  +|+++|+|++|+.|... +....+.  |+.++|  ++|.+.++.| |++++++ ++.+++......+...+.     
T Consensus       153 ~--~~~~li~D~a~~~g~~~-~~~~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~  228 (390)
T 3b8x_A          153 G--RDIILLEDNCESMGATF-NNKCAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNK  228 (390)
T ss_dssp             T--SCCEEEEECTTCTTCEE-TTEETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEET
T ss_pred             H--cCCEEEEECcCcccCEE-CCcccccccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHhcCCCcccccccc
Confidence            9  99999999999987654 4444444  555544  3455655566 8999886 555444322111100000     


Q ss_pred             -------HHHHH--Hhh-cCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCcc
Q 015729          235 -------KDYIK--FYN-LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEW  303 (401)
Q Consensus       235 -------~~~~~--~~~-~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~  303 (401)
                             ..+..  .+. .| +...+++...++++ ++++     .+++..++.+++++++.+.|+++ |+++.... ..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~aa~~l-~~l~-----~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~  300 (390)
T 3b8x_A          229 VTGVKSDDQFEESFKFVLPG-YNVRPLEMSGAIGI-EQLK-----KLPRFISVRRKNAEYFLDKFKDHPYLDVQQET-GE  300 (390)
T ss_dssp             TTEECCSCTTTSSSCBCSCC-CBCCCCHHHHHHHH-HHHH-----HHHHHHHHHHHHHHHHHHHHTTCSSEEECCCC-SB
T ss_pred             ccccccccccccccceeccc-cccCcCHHHHHHHH-HHHH-----HHHHHHHHHHHHHHHHHHHhcCCCCcccCCCC-CC
Confidence                   00000  000 11 11113334322222 2233     35678888899999999999886 77665422 11


Q ss_pred             CCceeEEEEcCC--CCCHHHHHHHHHhhCCeEEccCCCC---CC----------------------CcEEEEeecccCCH
Q 015729          304 FSDTVTAVIVPS--HINSSEIVRRAWQRYNLSLGLGLNK---VA----------------------GKVFRIGHLGHLNE  356 (401)
Q Consensus       304 ~~~~~~~~~~~~--~~~~~~l~~~L~~~~~i~v~~g~~~---~~----------------------~~~~Ri~~~~~~~~  356 (401)
                      ..+..+.+.++.  +.+..++.+.|.++ ||.++..+..   ..                      ...+||+++..+|+
T Consensus       301 ~~~~~~~i~~~~~~~~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~  379 (390)
T 3b8x_A          301 SSWFGFSFIIKKDSGVIRKQLVENLNSA-GIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELF  379 (390)
T ss_dssp             CCCCEEEEEECTTSCCCHHHHHHHHHHT-TBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCH
T ss_pred             cccEEEEEEecCcCcccHHHHHHHHHHC-CCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCH
Confidence            233345566642  56788999999765 9998864321   01                      02599999999999


Q ss_pred             HHHHHHHHHH
Q 015729          357 LQLLGCLAGV  366 (401)
Q Consensus       357 ~di~~~~~~i  366 (401)
                      +|+++++++|
T Consensus       380 ~di~~i~~~l  389 (390)
T 3b8x_A          380 DEIDYLREVL  389 (390)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhh
Confidence            9999999876

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.95  E-value=7.5e-26  Score=221.04  Aligned_cols=300  Identities=12%  Similarity=0.085  Sum_probs=210.4

Q ss_pred             HHHHHHHHHHHh-----cCC-CCceEEecCChhHHHHHHHhccCCCCC----eEEEEcCCcchHHHHHHHHHcCCcEEEE
Q 015729           44 TKTLLEDIKKIF-----KTT-SGTPFLIPTTGTGAWESALTNTLSPGD----RIISFLIGQFSLLWIDQQQRLNFNVDVV  113 (401)
Q Consensus        44 ~~~l~~~la~~~-----g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~v  113 (401)
                      ..++++.+++++     |.+ .++++++++|+++|+..++.+++.+||    +|+++.|.|+++.  ..++..|++++.+
T Consensus       131 ~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~--~~~~~~g~~~v~~  208 (498)
T 3ihj_A          131 VNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYS--AVISELDAIQVNY  208 (498)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHH--HHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHH--HHHHHcCCEEEEe
Confidence            445666666655     343 345699999999999999999888875    9999999888654  5567789999999


Q ss_pred             eCCCC--CCCChHHHHHHHhccCCC-CceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEEEEecccccCcce---
Q 015729          114 ESDWG--EGAKLDVLASKLAADTAH-TIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID---  184 (401)
Q Consensus       114 ~~~~~--~~~d~~~le~~~~~~~~~-~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~~~~~---  184 (401)
                      +++++  +.+|+++|++++++.... +++++++++|+||||.+++   +++|.++|++  +|++||+|++|+.+...   
T Consensus       209 ~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~--~~~~li~De~y~~~~~~~~~  286 (498)
T 3ihj_A          209 YLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWE--EKLFLLADEVYQDNVYSPDC  286 (498)
T ss_dssp             ECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--HTCEEEEECTTTTCBCCTTC
T ss_pred             eccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHH--cCcEEEEEcCccccccCCCC
Confidence            98764  578999999999763211 4799999999999999987   5668889999  99999999999754321   


Q ss_pred             --eccCc----------ccc-eEEEecCCCcccC--CCcceEEE---ecHHHHHHhccCCCCccccchHHHHHHhhcCCC
Q 015729          185 --FRMDE----------WGI-DVALTGSQKALSL--PTGMGIVC---ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTF  246 (401)
Q Consensus       185 --~~~~~----------~~~-di~~~s~~K~l~g--~~g~G~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  246 (401)
                        ..+..          ... .+++.|.||++.|  +.++|+++   .++++.+.+...             .  ..   
T Consensus       287 ~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~-------------~--~~---  348 (498)
T 3ihj_A          287 RFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKL-------------L--SV---  348 (498)
T ss_dssp             CCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHH-------------H--HH---
T ss_pred             CcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHH-------------H--hc---
Confidence              11111          011 3678899999953  44469988   477777665431             0  00   


Q ss_pred             CCCCCcHHHHHHHHHHHH----------HHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEc--
Q 015729          247 WPYTPSIQLLYGLRAALD----------LIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV--  313 (401)
Q Consensus       247 ~~~~~~~~~~~a~~~al~----------~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--  313 (401)
                       ..+++....+++.++++          .+.+ ..+..++++.++++.+.+.|+++ |+++..+.    .+.++++.+  
T Consensus       349 -~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~-~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~----gg~~~~~~l~~  422 (498)
T 3ihj_A          349 -RLCPPVSGQAAMDIVVNPPVAGEESFEQFSR-EKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQ----GAMYAFPRIFI  422 (498)
T ss_dssp             -SCCCCHHHHHHHHHHTCCCCTTSTTHHHHHH-HHHHHHHHHHHHHHHHHHHHHTSTTEECCCCC----BSSEECCEECC
T ss_pred             -cCCCCHHHHHHHHHHhcCCccCcccHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCcEecCCC----eEEEEEEeccC
Confidence             11355555555555542          1111 13567788899999999999987 87776543    344555444  


Q ss_pred             CC---------CCCHHHH-HHHHHhhCCeEEccCCCCC---CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          314 PS---------HINSSEI-VRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       314 ~~---------~~~~~~l-~~~L~~~~~i~v~~g~~~~---~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      |.         +.+.+++ +..++++.||.+.+|..+.   ...++|+++.  .+++++++++++|+++++++
T Consensus       423 p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~--~~~e~l~~~i~~L~~~~~~~  493 (498)
T 3ihj_A          423 PAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL--PPVEKLKTVLQKVKDFHINF  493 (498)
T ss_dssp             CHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHH
Confidence            21         3344553 4555555599999985432   2357999884  68999999999999988754

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.95  E-value=1.4e-25  Score=212.72  Aligned_cols=288  Identities=16%  Similarity=0.079  Sum_probs=204.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      .....++++.++++++.+  +.+++ ++|++|+..++.+++++||+|+++.++|++..  +...++..|++++.++.+  
T Consensus        51 ~~~~~~l~~~la~~~~~~--~~i~~-~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--  125 (386)
T 1cs1_A           51 NPTRDVVQRALAELEGGA--GAVLT-NTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG--  125 (386)
T ss_dssp             CHHHHHHHHHHHHHHTCS--EEEEE-SSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT--
T ss_pred             CccHHHHHHHHHHHhCCC--cEEEe-CCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCC--
Confidence            456789999999999986  33555 55699999999888999999999999988754  334457789999988864  


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                         |++++++.+++    +++++++++++||+|.+.|+++|.++|++  +|+++|+|++|+.+...... ..++|++++|
T Consensus       126 ---d~~~l~~~i~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~--~~~~li~De~~~~~~~~~~~-~~~~di~~~s  195 (386)
T 1cs1_A          126 ---DEQALRAALAE----KPKLVLVESPSNPLLRVVDIAKICHLARE--VGAVSVVDNTFLSPALQNPL-ALGADLVLHS  195 (386)
T ss_dssp             ---CHHHHHHHHHT----CCSEEEEECSCTTTCCCCCHHHHHHHHHH--TTCEEEEECTTTCTTTCCGG-GGTCSEEEEE
T ss_pred             ---CHHHHHHhhcc----CCcEEEEeCCCCCCCcccCHHHHHHHHHH--cCCEEEEECCCcccccCCcc-ccCceEEEEc
Confidence               89999999974    56999999999999999999999999999  99999999999877654333 4678999999


Q ss_pred             CCCcccCCCcc--eEEEecH-HHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHH
Q 015729          199 SQKALSLPTGM--GIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI  275 (401)
Q Consensus       199 ~~K~l~g~~g~--G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  275 (401)
                      .||+++++.+.  |++++++ ++.+.+....            .    +  +.++.+...++++..+++     .+....
T Consensus       196 ~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~------------~----~--~~~~~~~~~~~~~~~~l~-----~~~~~~  252 (386)
T 1cs1_A          196 CTKYLNGHSDVVAGVVIAKDPDVVTELAWWA------------N----N--IGVTGGAFDSYLLLRGLR-----TLVPRM  252 (386)
T ss_dssp             TTTTTTCSSCCCCEEEEESSHHHHHHHHHHH------------H----H--HTCBCCHHHHHHHHHHHT-----THHHHH
T ss_pred             CcccccCCCCceeEEEEeCcHHHHHHHHHHH------------H----h--cCCCCCHHHHHHHHhccc-----HHHHHH
Confidence            99999766553  9999986 6666554310            0    0  012345543333333333     234556


Q ss_pred             HHHHHHHHHHHHHHHHc-CCccc-cCC------------CccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccC-CC-
Q 015729          276 ERHRRLGKATRLAVEAW-GLKNC-TQK------------EEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLG-LN-  339 (401)
Q Consensus       276 ~~~~~~~~~l~~~L~~~-g~~~~-~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g-~~-  339 (401)
                      ++..++.+.+.+.|+++ .+... .+.            .....+.++.+.+++  ...++.+.|.+ .||.++.. +. 
T Consensus       253 ~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~-~gi~~~~~~~g~  329 (386)
T 1cs1_A          253 ELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG--DEQTLRRFLGG-LSLFTLAESLGG  329 (386)
T ss_dssp             HHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--CHHHHHHHHHT-CSSSEEBSCCCS
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC--CHHHHHHHHHh-CCcceEcccCCC
Confidence            66777788888887764 21110 000            001234577788753  25677777765 48887632 11 


Q ss_pred             ------------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          340 ------------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       340 ------------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                                              ...++++||++....++++++.+.++|+++
T Consensus       330 ~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~  383 (386)
T 1cs1_A          330 VESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA  383 (386)
T ss_dssp             SSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             cceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence                                    012478999988777777777777777654

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.95  E-value=9e-27  Score=218.53  Aligned_cols=320  Identities=12%  Similarity=0.074  Sum_probs=214.8

Q ss_pred             ccccCCCcCC--hHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCe-E
Q 015729           11 HLFVPGPVHI--PDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR-I   87 (401)
Q Consensus        11 ~~~~~~p~~~--~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~-v   87 (401)
                      .+.++++.+.  ++++++++.+.... ..+.......++++.+++++|.+.   .++++||++|+..++.+++.+||+ +
T Consensus        16 ~~~~~~~~~~g~~p~v~~ai~~~~~~-~~~~~~~~~~~l~~~la~~~~~~~---~i~~~~g~~a~~~a~~~~~~~g~~~v   91 (359)
T 3pj0_A           16 KLGGNGPRNVGVLTEALQNIDDNLES-DIYGNGAVIEDFETKIAKILGKQS---AVFFPSGTMAQQIALRIWADRKENRR   91 (359)
T ss_dssp             ESSSSSCCBHHHHHHHTTTSCTTCBC-CBTTBSHHHHHHHHHHHHHHTCSE---EEEESCHHHHHHHHHHHHHHHHTCCE
T ss_pred             hhcCCCccccCCCHHHHHHHHhhccc-CcccCCHHHHHHHHHHHHHhCCCc---EEEeCCHHHHHHHHHHHHHhcCCCcE
Confidence            4555655555  89999999884432 223345678899999999999865   356688999999998888888887 4


Q ss_pred             EEEc-CCcchHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCc-ccccchHHH---HH
Q 015729           88 ISFL-IGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETAT-GVTNNLSKV---RK  161 (401)
Q Consensus        88 l~~~-~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~t-G~~~~l~~i---~~  161 (401)
                      ++.. +.|++.. ........|++++.++. .++.+|+++++++ .    +++++|++++++||+ |.+++.+++   .+
T Consensus        92 vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~d~~~l~~~-~----~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~  165 (359)
T 3pj0_A           92 VAYHPLSHLEIHEQDGLKELQQITPLLLGT-ANQLLTIDDIKSL-R----EPVSSVLIELPQREIGGQLPAFEELEKISE  165 (359)
T ss_dssp             EEECTTCHHHHSSTTHHHHHHCCEEEECSC-TTSCCCHHHHHTC-S----SCCSEEEEESSBGGGTSBCCCHHHHHHHHH
T ss_pred             EEEeccceeeehhcchHHHhcCceEEecCC-cCCCcCHHHHHhc-c----CCceEEEEEecccCCCcccCCHHHHHHHHH
Confidence            4444 4433332 12233556999998887 4567899999987 3    478999999999888 788876555   99


Q ss_pred             HhhhcCCCcEEEEecccccCccee------ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchH
Q 015729          162 LLDEYRHPALFLVDGVSSICAIDF------RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK  235 (401)
Q Consensus       162 l~~~~~~~~~li~D~a~~~~~~~~------~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~  235 (401)
                      +|++  +|++||+|+++..+....      +.. .+.|+++.|.||+++++.| |+++.++++.+.+...          
T Consensus       166 ~~~~--~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~----------  231 (359)
T 3pj0_A          166 YCHE--QGISLHLDGARLWEITPFYQKSAEEIC-ALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIW----------  231 (359)
T ss_dssp             HHHH--HTCEEEEEETTCGGGHHHHTCCHHHHH-TTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHH----------
T ss_pred             HHHH--cCCEEEEECcchhcchhhhCCCHHHhh-ccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHH----------
Confidence            9999  999999999986543211      111 3578999999999977766 8999999987766431          


Q ss_pred             HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcC
Q 015729          236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVP  314 (401)
Q Consensus       236 ~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~  314 (401)
                         .....+.  .++.+... ++...+++..    . +..+++.++++++.+.|+++ |+++.... . .. .++++.++
T Consensus       232 ---~~~~~~~--~~~~~~~~-~a~~~~l~~~----~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~-~~-~~~~~~~~  297 (359)
T 3pj0_A          232 ---KRRYGGD--LISLYPYI-LSADYYFEKR----I-GKMAEYFEAAKGLAERFNSCSGVKTVPEV-P-VS-NMFHVYFE  297 (359)
T ss_dssp             ---HHHTTCC--CSCCHHHH-HHHHHHHHHH----G-GGHHHHHHHHHHHHHHHHTSTTEEEESSS-C-SS-SEEEEEES
T ss_pred             ---HHHhCCC--cchhHHHH-HHHHHHHHHH----H-HHhHHHHHHHHHHHHHHhhCCCceeeccC-C-cc-eEEEEEec
Confidence               0001111  11122222 2222333321    2 34455678888999999987 87764211 1 22 35666664


Q ss_pred             CC--CCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeec---ccCCHHHHHHHHHHHHHH
Q 015729          315 SH--INSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHL---GHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       315 ~~--~~~~~l~~~L~~~~~i~v~~g~~~~--~~~~~Ri~~~---~~~~~~di~~~~~~i~~~  369 (401)
                      ..  .+..++.+.|.++ ||.+.+|..+.  ...++|+++.   ...+.+++++++++|.+.
T Consensus       298 ~~~~~~~~~l~~~l~~~-GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          298 NSADEIGAILTKIQDET-GVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             SCHHHHHHHHHHHHHHH-CEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred             CccchhHHHHHHHHHhc-CcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence            32  2356788888776 99999985322  2356899663   245788999999988765

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.95  E-value=1.2e-26  Score=224.11  Aligned_cols=285  Identities=14%  Similarity=0.139  Sum_probs=195.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCC
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE  119 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  119 (401)
                      ....++++.+++++|.+   .+++++||++|+..++. ++++||+|+++.+.|+++.  +...++..|++++.++.+   
T Consensus       133 ~~~~~l~~~la~~~g~~---~~i~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~---  205 (464)
T 1ibj_A          133 PTRDALESLLAKLDKAD---RAFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT---  205 (464)
T ss_dssp             HHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT---
T ss_pred             HHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC---
Confidence            46889999999999875   37778888999988775 7899999999999887764  223457789999999865   


Q ss_pred             CCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecC
Q 015729          120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGS  199 (401)
Q Consensus       120 ~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~  199 (401)
                        |+++++++++    +++++|++++++||+|.+.|+++|.++|++  +|+++|+|++|+.+...... ..++|++++|.
T Consensus       206 --d~~~l~~~i~----~~tk~v~l~~p~NptG~v~~l~~i~~la~~--~gi~livDea~~~g~~~~~~-~~~~div~~S~  276 (464)
T 1ibj_A          206 --KLDEVAAAIG----PQTKLVWLESPTNPRQQISDIRKISEMAHA--QGALVLVDNSIMSPVLSRPL-ELGADIVMHSA  276 (464)
T ss_dssp             --SHHHHHHHCC----SSEEEEEECSSCTTTCCCCCHHHHHHHHHT--TTCEEEEECTTTCTTTCCGG-GTTCSEEEEET
T ss_pred             --CHHHHHHHhc----cCceEEEEeCCCCCCCEeecHHHHHHHHHH--cCCEEEEECCCcccccCChh-hcCCEEEEECC
Confidence              8999999987    367999999999999999999999999999  99999999999876542122 25799999999


Q ss_pred             CCcccCCCcc--eEEEecH-HHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHH
Q 015729          200 QKALSLPTGM--GIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE  276 (401)
Q Consensus       200 ~K~l~g~~g~--G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~  276 (401)
                      ||+++++.|+  |++++++ ++.+.+....            ..  .|    ++.+....+++.++++.     +....+
T Consensus       277 sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~------------~~--~g----~~~~~~~~~a~~~al~~-----~~~r~~  333 (464)
T 1ibj_A          277 TKFIAGHSDVMAGVLAVKGEKLAKEVYFLQ------------NS--EG----SGLAPFDCWLCLRGIKT-----MALRIE  333 (464)
T ss_dssp             TTTTTCSSCCCCEEEEECSHHHHHHHHHHH------------HH--TT----CBCCHHHHHHHHHHHTT-----HHHHHH
T ss_pred             cccccCCCCCcEEEEEEChHHHHHHHHHHH------------Hh--cC----CCCCHHHHHHHHhchhh-----HHHHHH
Confidence            9999877665  9999985 6655553210            00  11    22444433333344331     122233


Q ss_pred             HHHHHHHHHHHHHHHc---------------CCccccCCCccCCceeEEEEcCCCCC-HHHHHHHHHhhCCeEEccCCC-
Q 015729          277 RHRRLGKATRLAVEAW---------------GLKNCTQKEEWFSDTVTAVIVPSHIN-SSEIVRRAWQRYNLSLGLGLN-  339 (401)
Q Consensus       277 ~~~~~~~~l~~~L~~~---------------g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~L~~~~~i~v~~g~~-  339 (401)
                      +..++.+.+.+.|++.               ++++..++.. ..+.+++|.++ +.+ ...+.+.|.. .+|.++.|.. 
T Consensus       334 ~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~-g~g~~~~~~l~-~~~~~~~~~~~L~~-~gi~v~~G~~~  410 (464)
T 1ibj_A          334 KQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAK-GAGSVFSFITG-SVALSKHLVETTKY-FSIAVSFGSVK  410 (464)
T ss_dssp             HHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCS-CCCSEEEEECS-CHHHHHHHHHHCSS-SEECSCCCSSS
T ss_pred             HHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCC-CCceEEEEEEC-CHHHHHHHHHhcCc-ceEeecCCCCc
Confidence            3334444444445432               2222222211 13457888883 321 2346666643 4777776641 


Q ss_pred             -----------C-----------CCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          340 -----------K-----------VAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       340 -----------~-----------~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                                 .           ..++++|+++..    ||+++++++|++++++
T Consensus       411 sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~  461 (464)
T 1ibj_A          411 SLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKT  461 (464)
T ss_dssp             CEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred             eeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhh
Confidence                       0           124679997654    8999999999999875

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.95  E-value=1e-25  Score=214.47  Aligned_cols=317  Identities=14%  Similarity=0.039  Sum_probs=209.3

Q ss_pred             cccCCCcCChHHHHHHHccCcC---CC-CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeE
Q 015729           12 LFVPGPVHIPDQVIRAMNRNNE---DY-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRI   87 (401)
Q Consensus        12 ~~~~~p~~~~~~v~~a~~~~~~---~~-~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~v   87 (401)
                      .+...++...+.+.+++.....   .+ .+....+...++++.+++++|.+  + .+++++|++|+..++.+++++||+|
T Consensus        31 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~--~-~i~~~sG~~a~~~~l~~~~~~gd~v  107 (398)
T 1gc0_A           31 PVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGE--A-GLALASGMGAITSTLWTLLRPGDEV  107 (398)
T ss_dssp             CBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCS--E-EEEESSHHHHHHHHHHHHCCTTCEE
T ss_pred             CccCCCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHhCCC--c-EEEECCHHHHHHHHHHHHhcCCCEE
Confidence            3444556666777666642111   11 12223467889999999999986  2 5667777999999998889999999


Q ss_pred             EEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhh
Q 015729           88 ISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE  165 (401)
Q Consensus        88 l~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~  165 (401)
                      +++.+.|++..  +...++..|++++.++.+     |++++++.+++    ++++|++++++||+|.+.|+++|.++|++
T Consensus       108 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~  178 (398)
T 1gc0_A          108 LLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMTP----ATRVIYFESPANPNMHMADIAGVAKIARK  178 (398)
T ss_dssp             EEESSCCSHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHGG
T ss_pred             EEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCC----CCeEEEEECCCCCCcccccHHHHHHHHHH
Confidence            99999988865  222346789999988764     89999999874    67999999999999999999999999999


Q ss_pred             cCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCc--ceEEEecHHHHH-HhccCCCCccccchHHHHHHhh
Q 015729          166 YRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTG--MGIVCASPKALE-ASKTAKSVRVFFDWKDYIKFYN  242 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  242 (401)
                        +|+++|+|++|+.+...... ..++|+++.|.||+++++.+  .|+++++++.++ .+...             ..  
T Consensus       179 --~~~~li~D~~~~~~~~~~~~-~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~-------------~~--  240 (398)
T 1gc0_A          179 --HGATVVVDNTYCTPYLQRPL-ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQG-------------LK--  240 (398)
T ss_dssp             --GTCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTH-------------HH--
T ss_pred             --cCCEEEEECCCcccccCCch-hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHH-------------hh--
Confidence              99999999999876543332 45799999999999976543  499999988655 33221             00  


Q ss_pred             cCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CC--------------ccccCCCccCCce
Q 015729          243 LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GL--------------KNCTQKEEWFSDT  307 (401)
Q Consensus       243 ~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~--------------~~~~~~~~~~~~~  307 (401)
                       + .+.++.+...++++.++++.     +....++..++.+.+.+.|++. ++              .+..+... ..+.
T Consensus       241 -~-~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~-~~~~  312 (398)
T 1gc0_A          241 -D-MTGAVLSPHDAALLMRGIKT-----LNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMS-QPGG  312 (398)
T ss_dssp             -H-HTCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC-----------------CCTT
T ss_pred             -c-cCCCCCCHHHHHHHHhccch-----HHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCC-CCce
Confidence             0 01234566544544444442     3456667777888888888764 11              11111101 2345


Q ss_pred             eEEEEcCCCCCHHHHHHHHHhhCCeEEcc---CCC------C-----------------CCCcEEEEeecccCCHHHHHH
Q 015729          308 VTAVIVPSHINSSEIVRRAWQRYNLSLGL---GLN------K-----------------VAGKVFRIGHLGHLNELQLLG  361 (401)
Q Consensus       308 ~~~~~~~~~~~~~~l~~~L~~~~~i~v~~---g~~------~-----------------~~~~~~Ri~~~~~~~~~di~~  361 (401)
                      ++.|.++.  +..++.+.+. +.++.++.   |..      +                 ..++.+||++....++++++.
T Consensus       313 ~~~~~l~~--~~~~~~~~l~-~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~  389 (398)
T 1gc0_A          313 MIAFELKG--GIGAGRRFMN-ALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLAD  389 (398)
T ss_dssp             EEEEEETT--HHHHHHHHHH-HCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHH
T ss_pred             EEEEEECC--CHHHHHHHHH-hCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHH
Confidence            77788842  2234444454 44666543   211      0                 124789999888888889999


Q ss_pred             HHHHHHHH
Q 015729          362 CLAGVEMI  369 (401)
Q Consensus       362 ~~~~i~~~  369 (401)
                      +.++|+++
T Consensus       390 l~~al~~~  397 (398)
T 1gc0_A          390 VQQALKAS  397 (398)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            88888754

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.95  E-value=8.7e-26  Score=215.72  Aligned_cols=325  Identities=13%  Similarity=0.043  Sum_probs=212.0

Q ss_pred             CCCCcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHh-cCCC----CceE--EecCChhHHHHHH--
Q 015729            6 APGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF-KTTS----GTPF--LIPTTGTGAWESA--   76 (401)
Q Consensus         6 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~----~~~i--~~~~g~t~a~~~~--   76 (401)
                      +..+.|++.++|..+.+++.++...   ....+.......++++.+++++ |...    ++.+  ..+.++++|+..+  
T Consensus        46 l~~g~~~d~~~~~~v~~a~~~a~~~---~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~  122 (409)
T 4eu1_A           46 LSIGVYRDDADQPFVLECVKQATLG---TNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGD  122 (409)
T ss_dssp             CCCSSCCCTTSCCCCCHHHHTCCCC---SCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHH
T ss_pred             eeeeEEECCCCCEeecHHHHhcCcc---ccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHH
Confidence            3445555666677777777666211   1122322344568899999876 5441    3346  3488999998865  


Q ss_pred             -HhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC--CCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc
Q 015729           77 -LTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES--DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        77 -~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~  153 (401)
                       +.++.++||+|+++.|+|.++.  ..++..|++++.++.  +.++.+|++++++.+++.+ .+++++++++|+||||.+
T Consensus       123 ~~~~~~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~i~~~~p~NPtG~~  199 (409)
T 4eu1_A          123 LLNRFVANCNRIYGPDVGYPNHE--SIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAP-EGSVILVHACAHNPTGVD  199 (409)
T ss_dssp             HGGGTSSSCCEEEEESSCCTHHH--HHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSC-TTCEEEEESSSCTTTCCC
T ss_pred             HHHHhcCCCCEEEEeCCCcHhHH--HHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCC-CCcEEEEECCCCCCCCCC
Confidence             3557789999999999887764  567789999999997  3456789999999997532 245677779999999999


Q ss_pred             cchH---HHHHHhhhcCCCcEEEEecccccCcce--------e-cc-CcccceEEEecCCCccc-CCCcceEE---EecH
Q 015729          154 NNLS---KVRKLLDEYRHPALFLVDGVSSICAID--------F-RM-DEWGIDVALTGSQKALS-LPTGMGIV---CASP  216 (401)
Q Consensus       154 ~~l~---~i~~l~~~~~~~~~li~D~a~~~~~~~--------~-~~-~~~~~di~~~s~~K~l~-g~~g~G~l---~~~~  216 (401)
                      ++.+   +|.++|++  +|+++|+|++|+.+...        . .. ......+++.|.+|.++ .+.++|++   +.++
T Consensus       200 ~~~~~l~~i~~~~~~--~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~  277 (409)
T 4eu1_A          200 PTHDDWRQVCDVIKR--RNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASA  277 (409)
T ss_dssp             CCHHHHHHHHHHHHH--TTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSH
T ss_pred             CCHHHHHHHHHHHHh--CCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCH
Confidence            9854   58899999  99999999998754321        0 11 12234578889999984 22346885   4566


Q ss_pred             HHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHH-----HhcHHHHHHHHHHHHHHHHHHHHH
Q 015729          217 KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-----EEGLENVIERHRRLGKATRLAVEA  291 (401)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~  291 (401)
                      +..+.+...        +    ......  ...+++.....++.++++...     ...+++.++++.++++++.+.|++
T Consensus       278 ~~~~~l~~~--------~----~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  343 (409)
T 4eu1_A          278 EEAKRLVSQ--------L----ALLIRP--MYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKA  343 (409)
T ss_dssp             HHHHHHHHH--------H----HHHHHH--HHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--------H----HHHHhh--hcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            633322110        0    000000  011244544455555554211     123567888999999999999998


Q ss_pred             cC----CccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHH
Q 015729          292 WG----LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVE  367 (401)
Q Consensus       292 ~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~  367 (401)
                      +|    +++..+    ..+.++++.+    +. ++...|++++||.+.++        .||++. ..+++|+++++++|+
T Consensus       344 ~g~~~~~~~~~~----~~~~~~~~~~----~~-~~~~~ll~~~gv~v~p~--------~Ri~~~-~~~~~~i~~~~~~l~  405 (409)
T 4eu1_A          344 CGSVHDWSHIER----QVGMMAYTGL----TR-EQVELLRSEYHIYMTLN--------GRAAVS-GLNSTNVEYVSQAIH  405 (409)
T ss_dssp             TTCCSCCHHHHH----SCSSEEECCC----CH-HHHHHHHHHHCEECCTT--------CEEEGG-GCCTTTHHHHHHHHH
T ss_pred             cCCCCCcceecC----CceEEEEeCC----CH-HHHHHHHHcCCEEEcCC--------CEEEEE-ecCHhhHHHHHHHHH
Confidence            86    555443    2334554333    33 45666665569998764        278664 467888999999998


Q ss_pred             HHH
Q 015729          368 MIL  370 (401)
Q Consensus       368 ~~l  370 (401)
                      +++
T Consensus       406 ~~l  408 (409)
T 4eu1_A          406 NVT  408 (409)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.91  E-value=1.4e-29  Score=240.80  Aligned_cols=321  Identities=9%  Similarity=-0.013  Sum_probs=224.5

Q ss_pred             cCChHHHHHHHccCcCCC-CCccHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           18 VHIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      .+.++.+.+++.+..... ..+.  ....++++.+++++    |.+ .++++++++|+++|+..++.+++++||+|++..
T Consensus        43 ~~~~~~v~~a~~~~~~~~~~~y~--~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~  120 (392)
T 3b1d_A           43 FEVMPEVKQAIHDYAEQLVYGYT--YASDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINS  120 (392)
Confidence            345677777777754321 1122  11567777777765    321 234599999999999999999899999999999


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCCCC---CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhh
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESDWG---EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE  165 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~---~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~  165 (401)
                      ++|++..  ..++..|++++.++.+..   +.+|++++++.+++   .+++++++++++||||.+++   +++|.++|++
T Consensus       121 p~~~~~~--~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~  195 (392)
T 3b1d_A          121 PVYPPFA--RSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE---NDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQK  195 (392)
Confidence            9887764  456677888888887532   34799999998863   25688999999999999986   7889999999


Q ss_pred             cCCCcEEEEecccccCcce-------eccCc--ccceEEEecCCCccc-CCCcceEEEecHH-HHHHhccCCCCccccch
Q 015729          166 YRHPALFLVDGVSSICAID-------FRMDE--WGIDVALTGSQKALS-LPTGMGIVCASPK-ALEASKTAKSVRVFFDW  234 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~~~-------~~~~~--~~~di~~~s~~K~l~-g~~g~G~l~~~~~-~~~~~~~~~~~~~~~~~  234 (401)
                        +|+++|+|++|+.+...       .....  .+.++++.|.+|+++ ++.++|+++++++ +.+.+......      
T Consensus       196 --~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~------  267 (392)
T 3b1d_A          196 --HHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLV------  267 (392)
Confidence              99999999999864321       11111  346788999999995 3445799998654 66655432110      


Q ss_pred             HHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-c-CCccccCCCccCCceeEEEE
Q 015729          235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKEEWFSDTVTAVI  312 (401)
Q Consensus       235 ~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~  312 (401)
                                 +...+++...++++.++++.. ...+++.++++.++++.+.+.|++ + ++.+..+    ..+.++++.
T Consensus       268 -----------~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~~~~i~  331 (392)
T 3b1d_A          268 -----------NNHHEVSSLGYIATETAYRYG-KPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKP----QGTYLIWLD  331 (392)
Confidence                       001123444445555555532 234677888888999999999987 5 7766543    234455677


Q ss_pred             cCC-CCCHHHHHHHHHhhCCeEEccCCCCC--CCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          313 VPS-HINSSEIVRRAWQRYNLSLGLGLNKV--AGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       313 ~~~-~~~~~~l~~~L~~~~~i~v~~g~~~~--~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      ++. +.+..++.+.|.++.||.+.+|....  .++++||++..  +++++++++++|+++++
T Consensus       332 ~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~--~~e~i~~~l~~l~~~l~  391 (392)
T 3b1d_A          332 FSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA--PKSLVEEICKRIVCCLP  391 (392)
Confidence            754 34667888888744599999884432  34679998665  68899999999988764

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.95  E-value=1.6e-25  Score=216.41  Aligned_cols=325  Identities=15%  Similarity=0.072  Sum_probs=209.5

Q ss_pred             hHHHHHHHccCcCC--C--CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCC----C----CCeEE
Q 015729           21 PDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS----P----GDRII   88 (401)
Q Consensus        21 ~~~v~~a~~~~~~~--~--~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~----~----gd~vl   88 (401)
                      ++.+++++.+....  +  ......+...++.+.++++++... +++++++||++|++.++.....    +    +|+|+
T Consensus        62 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi  140 (448)
T 3dod_A           62 KKELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKKL-TRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFI  140 (448)
T ss_dssp             CHHHHHHHHHHHTTCSCCCCSSSEEHHHHHHHHHHHHHSCTTE-EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred             CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCC-CEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEE
Confidence            56666666653322  1  122334667789999999986543 4599999999999999876543    3    49999


Q ss_pred             EEcCCcchHHHHHHHHHc-----------CCcEEEEeCCCCCCC-----------ChHHHHHHHhccCCCCceEEEEEec
Q 015729           89 SFLIGQFSLLWIDQQQRL-----------NFNVDVVESDWGEGA-----------KLDVLASKLAADTAHTIKAICIVHN  146 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~-----------g~~~~~v~~~~~~~~-----------d~~~le~~~~~~~~~~~~~i~~~~~  146 (401)
                      +.+++||+..........           ...+..++.+...+.           |+++||+++++.. +++++|+++.+
T Consensus       141 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~a~vi~ep~  219 (448)
T 3dod_A          141 AMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHH-EEIAALSIESM  219 (448)
T ss_dssp             EEC-----------------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHG-GGEEEEEEESS
T ss_pred             EECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCC-CCEEEEEEeCc
Confidence            999988876522111100           113344554432222           4789999987322 35678888888


Q ss_pred             C-CCcccccc----hHHHHHHhhhcCCCcEEEEeccccc-Cc--ce--eccCcccceEEEecCCCcccCC-CcceEEEec
Q 015729          147 E-TATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSI-CA--ID--FRMDEWGIDVALTGSQKALSLP-TGMGIVCAS  215 (401)
Q Consensus       147 ~-n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~-~~--~~--~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~  215 (401)
                      + +++|.+.+    +++|.++|++  +|++||+|++|+. +.  ..  .+.....+|++++|  |+++++ .++|+++++
T Consensus       220 ~~~~~G~~~~~~~~l~~l~~l~~~--~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~s--K~l~~G~~~ig~v~~~  295 (448)
T 3dod_A          220 VQGASGMIVMPEGYLAGVRELCTT--YDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAG--KGITGGYLPIAVTFAT  295 (448)
T ss_dssp             EESTTTCEECCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEEE
T ss_pred             ccCCCCeecCCHHHHHHHHHHHHH--hCCEEEEeccccCCCcccchhhhhhcCCCCCEEEec--ccccCCcCceEEEEEC
Confidence            7 89998776    8999999999  9999999999873 21  11  12223346777665  999776 478999999


Q ss_pred             HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CC
Q 015729          216 PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GL  294 (401)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~  294 (401)
                      +++.+.+.......         ..+..+  ..++.++..+++..++++.+.+++   ..++.+++.+++++.|.++ .+
T Consensus       296 ~~~~~~~~~~~~~~---------~~~~~~--~t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~l~~l~~~  361 (448)
T 3dod_A          296 EDIYKAFYDDYENL---------KTFFHG--HSYTGNQLGCAVALENLALFESEN---IVEQVAEKSKKLHFLLQDLHAL  361 (448)
T ss_dssp             HHHHHTTCSCGGGC---------CCCCCC--CTTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhhhccccC---------Cccccc--CCCCcCHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHhcC
Confidence            99988776410000         000001  134566777788888888776543   5666777777777777664 33


Q ss_pred             ccccCCCccCCceeEEEEcCCCCC-----------HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHH
Q 015729          295 KNCTQKEEWFSDTVTAVIVPSHIN-----------SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCL  363 (401)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~  363 (401)
                      ......  ...+.++++.+++..+           ..++++.|+++ ||.+.++     ++++||++...+|++|+++++
T Consensus       362 ~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~-----~~~iRi~~~~~~t~e~i~~~l  433 (448)
T 3dod_A          362 PHVGDI--RQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMREL-GMLTRPL-----GDVIAFLPPLASTAEELSEMV  433 (448)
T ss_dssp             TTEEEE--EEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECCEE-----TTEEEECCCTTCCHHHHHHHH
T ss_pred             CCeEEE--EeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHC-CcEEecc-----CCEEEEECCCCCCHHHHHHHH
Confidence            322211  1234577777754322           36788889877 9998876     478999888788999999999


Q ss_pred             HHHHHHHHhc
Q 015729          364 AGVEMILKDV  373 (401)
Q Consensus       364 ~~i~~~l~~~  373 (401)
                      ++|+++++++
T Consensus       434 ~~l~~~l~~~  443 (448)
T 3dod_A          434 AIMKQAIHEV  443 (448)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.95  E-value=8.2e-26  Score=217.33  Aligned_cols=327  Identities=16%  Similarity=0.127  Sum_probs=204.6

Q ss_pred             hHHHHHHHccCcCC--C--CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC--------CCCCeEE
Q 015729           21 PDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--------SPGDRII   88 (401)
Q Consensus        21 ~~~v~~a~~~~~~~--~--~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~--------~~gd~vl   88 (401)
                      ++.+++++.+....  +  ......+...++++.++++++.+.+ ++++++||++|++.++..+.        .++++|+
T Consensus        47 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi  125 (430)
T 3i4j_A           47 RAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTF-RFWAVSGGSEATESAVKLARQYHVERGEPGRFKVI  125 (430)
T ss_dssp             CHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCTTC-EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred             CHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCC-EEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence            56666666653211  1  1123456778999999999987654 59999999999999987755        4578999


Q ss_pred             EEcCCcchHHHHHHHHHcCC--------------cEEEEeCCCC---CCCChHHHHHHHhccCCCCceEEEEEecCC-Cc
Q 015729           89 SFLIGQFSLLWIDQQQRLNF--------------NVDVVESDWG---EGAKLDVLASKLAADTAHTIKAICIVHNET-AT  150 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~g~--------------~~~~v~~~~~---~~~d~~~le~~~~~~~~~~~~~i~~~~~~n-~t  150 (401)
                      +.+++|++...... ...+.              .+..++.+..   +..|++++++++++...+++++|+++.+++ ++
T Consensus       126 ~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~  204 (430)
T 3i4j_A          126 TRVPSYHGASLGSL-AASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASD  204 (430)
T ss_dssp             EETTC--------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGG
T ss_pred             EEeCCcCCCCcccc-cccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcC
Confidence            99998887652111 11111              3334443322   123568999988742112457777777778 89


Q ss_pred             ccccc----hHHHHHHhhhcCCCcEEEEecccccC-cc--eeccC---cccceEEEecCCCcccCC-CcceEEEecHHHH
Q 015729          151 GVTNN----LSKVRKLLDEYRHPALFLVDGVSSIC-AI--DFRMD---EWGIDVALTGSQKALSLP-TGMGIVCASPKAL  219 (401)
Q Consensus       151 G~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~-~~--~~~~~---~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~  219 (401)
                      |.+.+    +++|.++|++  +|+++|+|++|+.. ..  .+...   ...+|++++|  |+++++ .++|++++++++.
T Consensus       205 G~~~~~~~~l~~l~~l~~~--~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t~s--K~l~~G~~r~G~~~~~~~i~  280 (430)
T 3i4j_A          205 AALAPAPGYYERVRDICDE--AGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLG--KGLAAGYAPLAGLLAAPQVY  280 (430)
T ss_dssp             TTCCCCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEEEC--GGGTTTSSCCEEEEECHHHH
T ss_pred             CcccCCHHHHHHHHHHHHH--cCCEEEEechhhCCCcccchhhhhhhcCCCCcEEEEc--ccccCCccccEEEEECHHHH
Confidence            98776    8999999999  99999999998732 11  11122   2346777665  999765 5689999999998


Q ss_pred             HHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccc
Q 015729          220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNC  297 (401)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~  297 (401)
                      +.+..... .           +..+  .+++.++..+++..++++.+.+++   ..++.+++.+++++.|.++  .++..
T Consensus       281 ~~~~~~~~-~-----------~~~~--~t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~  343 (430)
T 3i4j_A          281 ETVMGGSG-A-----------FMHG--FTYAGHPVSVAAGLSVLDIVERED---LTGAAKERGAQLLAGLQALQARFPQM  343 (430)
T ss_dssp             HHHHHTTC-B-----------CCCC--CTTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred             HHHhccCC-c-----------cccc--CCCCCCHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            87764210 0           0011  134566777777888888766543   4555666666666666553  22221


Q ss_pred             cCCCccCCceeEEEEcCCC---------CCHHHHHHHHHhhCCeEEccCCC---CCCCcEEEEeecccCCHHHHHHHHHH
Q 015729          298 TQKEEWFSDTVTAVIVPSH---------INSSEIVRRAWQRYNLSLGLGLN---KVAGKVFRIGHLGHLNELQLLGCLAG  365 (401)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~L~~~~~i~v~~g~~---~~~~~~~Ri~~~~~~~~~di~~~~~~  365 (401)
                      ....  ..+.++++.+++.         ....++.+.|.++ ||.++++..   ...++++||++....+++++++++++
T Consensus       344 ~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~  420 (430)
T 3i4j_A          344 MQVR--GTGLLLGVVLGDLATGQAFETPGIASRIGAAALKR-GLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLAL  420 (430)
T ss_dssp             EEEE--EETTEEEEEEC------------CHHHHHHHHHHT-TEECC-----------CEEEECCCTTCCHHHHHHHHHH
T ss_pred             EEEE--EEEEEEEEEeccccccCCCccHHHHHHHHHHHHhC-CCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            1111  1234666766421         1236788888866 999988732   11356799988877899999999999


Q ss_pred             HHHHHHhc
Q 015729          366 VEMILKDV  373 (401)
Q Consensus       366 i~~~l~~~  373 (401)
                      |+++++++
T Consensus       421 l~~~l~~~  428 (430)
T 3i4j_A          421 LAGALEDV  428 (430)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998753

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.95  E-value=2.6e-26  Score=220.05  Aligned_cols=309  Identities=15%  Similarity=0.089  Sum_probs=216.3

Q ss_pred             ChHHHHHHHccCcCCC--CC-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCC-------CC-CeEE
Q 015729           20 IPDQVIRAMNRNNEDY--RS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS-------PG-DRII   88 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~~--~~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~-------~g-d~vl   88 (401)
                      .++.+++++.+.....  .. ....+...++++.+++++|.   +++++++||++|++.++..+..       +| ++|+
T Consensus        74 ~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~---~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi  150 (420)
T 2pb2_A           74 CHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFA---ERVLFMNSGTEANETAFKLARHYACVRHSPFKTKII  150 (420)
T ss_dssp             TCHHHHHHHHHHHTTCCCCCTTSCCHHHHHHHHHHHHHSSC---SEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEE
T ss_pred             CCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhCCC---CeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEE
Confidence            4677777777643221  11 12346778999999999874   3499999999999999877654       66 5899


Q ss_pred             EEcCCcchHHHHHHHHHcCCc------------EEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc---
Q 015729           89 SFLIGQFSLLWIDQQQRLNFN------------VDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT---  153 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~---  153 (401)
                      +.+++|++.... .....|.+            +..++.+     |++++++++++    ++++|++++++|++|.+   
T Consensus       151 ~~~~~yh~~~~~-~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~le~~i~~----~~~~vi~~p~~~~gG~~~~~  220 (420)
T 2pb2_A          151 AFHNAFHGRSLF-TVSVGGQPKYSDGFGPKPADIIHVPFN-----DLHAVKAVMDD----HTCAVVVEPIQGEGGVQAAT  220 (420)
T ss_dssp             EETTCCCCSSHH-HHHHSSCHHHHTTSSSCCSCEEEECTT-----CHHHHHHHCCT----TEEEEEECSEETTTTSEECC
T ss_pred             EEeCCcCCcCHH-HHHhcCCccccccCCCCCCCeEEecCC-----CHHHHHHHhcc----CceEEEEeCCcCCCCeecCC
Confidence            999888765421 22223332            4555532     89999999873    67999999888888862   


Q ss_pred             -cchHHHHHHhhhcCCCcEEEEecccccCcc---ee--ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCC
Q 015729          154 -NNLSKVRKLLDEYRHPALFLVDGVSSICAI---DF--RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS  227 (401)
Q Consensus       154 -~~l~~i~~l~~~~~~~~~li~D~a~~~~~~---~~--~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~  227 (401)
                       .++++|.++|++  +|+++|+|++|.....   .+  +.....+|++++  +|+++++.++|++++++++.+.+.....
T Consensus       221 ~~~l~~l~~l~~~--~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~diit~--sK~l~~G~~iG~~~~~~~l~~~l~~~~~  296 (420)
T 2pb2_A          221 PEFLKGLRDLCDE--HQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTS--AKALGGGFPVSAMLTTQEIASAFHVGSH  296 (420)
T ss_dssp             HHHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGGTTSCCEEEEECHHHHTTCC----
T ss_pred             HHHHHHHHHHHHH--cCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeEEe--cccccCCCceEEEEEhHHHHHhhcCCCc
Confidence             358899999999  9999999999963211   11  222234788755  6999866678999999987665543100


Q ss_pred             CccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCC
Q 015729          228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFS  305 (401)
Q Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~  305 (401)
                                      +.  .++.+...++++.++++.+.+   ++..++.+++.+++.+.|+++  +++......  ..
T Consensus       297 ----------------~~--t~~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~~  353 (420)
T 2pb2_A          297 ----------------GS--TYGGNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIR--GM  353 (420)
T ss_dssp             ----------------CC--EECCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE--EE
T ss_pred             ----------------Cc--ccCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE--ec
Confidence                            11  234666667777777876543   457788888999999998875  333321111  12


Q ss_pred             ceeEEEEcCCCC--CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          306 DTVTAVIVPSHI--NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       306 ~~~~~~~~~~~~--~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +.++++.+++..  +..++.+.|.++ ||.+.++.    ++++||++....+++|+++++++|+++++++
T Consensus       354 g~~~~v~~~~~~~~~~~~l~~~l~~~-Gi~v~~~~----~~~iRl~~~~~~t~eei~~~~~~l~~~l~~~  418 (420)
T 2pb2_A          354 GLLIGAELKPKYKGRARDFLYAGAEA-GVMVLNAG----ADVMRFAPSLVVEEADIHEGMQRFAQAVGKV  418 (420)
T ss_dssp             TTEEEEEECGGGTTCHHHHHHHHHHT-TEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEECCCchHHHHHHHHHHHHC-CCEEEeCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            456778875432  577899999875 99988763    5689999877789999999999999998753

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.95  E-value=1.2e-25  Score=217.30  Aligned_cols=327  Identities=16%  Similarity=0.149  Sum_probs=222.6

Q ss_pred             hHHHHHHHccCcCCC---CC-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCC--------CCCeEE
Q 015729           21 PDQVIRAMNRNNEDY---RS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS--------PGDRII   88 (401)
Q Consensus        21 ~~~v~~a~~~~~~~~---~~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~--------~gd~vl   88 (401)
                      ++++++++.+.....   .. ....+...++++.++++++.+. +++++++||++|++.++..+..        ++|+|+
T Consensus        68 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi  146 (449)
T 3a8u_X           68 RKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNL-NHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMI  146 (449)
T ss_dssp             CHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTE-EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred             CHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCC-CEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            677888877754322   11 2334567789999999987644 4599999999999999876543        679999


Q ss_pred             EEcCCcchHHHHHHHHHcC------------CcEEEEeCCCCC-----CCC--------hHHHHHHHhccCCCCceEEEE
Q 015729           89 SFLIGQFSLLWIDQQQRLN------------FNVDVVESDWGE-----GAK--------LDVLASKLAADTAHTIKAICI  143 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~-----~~d--------~~~le~~~~~~~~~~~~~i~~  143 (401)
                      +.+++|++..... ....|            ..+..++.+...     .+|        ++++++++++...+++++|++
T Consensus       147 ~~~~~yhg~~~~~-~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~  225 (449)
T 3a8u_X          147 GRARGYHGVNIAG-TSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFV  225 (449)
T ss_dssp             EETTCCCCSSHHH-HHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEE
T ss_pred             EECCCcCCCChhh-hhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            9999888764322 22222            134556544311     146        899999987421125677777


Q ss_pred             EecCCCcccccc----hHHHHHHhhhcCCCcEEEEecccc-cCcc--ee--ccCcccceEEEecCCCcccCC-CcceEEE
Q 015729          144 VHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSS-ICAI--DF--RMDEWGIDVALTGSQKALSLP-TGMGIVC  213 (401)
Q Consensus       144 ~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~-~~~~--~~--~~~~~~~di~~~s~~K~l~g~-~g~G~l~  213 (401)
                      ++.++++|.+.+    +++|.++|++  +|+++|+|++|+ ++..  .+  +.....+|++++  +|+++++ .++|+++
T Consensus       226 ~p~~~~tG~~~~~~~~l~~l~~l~~~--~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~s~--sK~l~~G~~~~G~~~  301 (449)
T 3a8u_X          226 EPLAGSAGVLVPPEGYLKRNREICNQ--HNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCI--AKQVTNGAIPMGAVI  301 (449)
T ss_dssp             CSSBTTTTCBCCCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGGTTSSCCEEEE
T ss_pred             cCccCCCCCccCCHHHHHHHHHHHHH--hCCEEEEeccccCccccCcchhhhhcCCCCCEEEE--cccccCCCCceEEEE
Confidence            777788999888    9999999999  999999999995 5421  11  222234687754  5999754 4489999


Q ss_pred             ecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-
Q 015729          214 ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-  292 (401)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-  292 (401)
                      +++++.+.+.........       ..+..+  ..++.++..++++.++++.+.++   ...++.+++.+++++.|+++ 
T Consensus       302 ~~~~~~~~l~~~~~~~~~-------~~~~~~--~t~~~~~~~~aa~~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~  369 (449)
T 3a8u_X          302 ASTEIYQTFMNQPTPEYA-------VEFPHG--YTYSAHPVACAAGLAALCLLQKE---NLVQSVAEVAPHFEKALHGIK  369 (449)
T ss_dssp             EEHHHHHHHHTCSSCTTS-------CSSCCC--CTTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHTTT
T ss_pred             ECHHHHHHhhccCccccc-------cccccc--CCCcccHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHh
Confidence            999888777542110000       000001  13345677778888888877664   36778888889999999875 


Q ss_pred             CCccccCCCccCCceeEEEEcCCCCC-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHH
Q 015729          293 GLKNCTQKEEWFSDTVTAVIVPSHIN-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVE  367 (401)
Q Consensus       293 g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~  367 (401)
                      +++......  ..+.++++.++....     ..++.+.|.++ ||.+.++     ++++||++....+++|+++++++|+
T Consensus       370 ~~~~~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~-----g~~iRis~~~~~t~~~i~~~l~~l~  441 (449)
T 3a8u_X          370 GAKNVIDIR--NFGLAGAIQIAPRDGDAIVRPFEAGMALWKA-GFYVRFG-----GDTLQFGPTFNSKPQDLDRLFDAVG  441 (449)
T ss_dssp             TSTTEEEEE--EETTEEEEEECCBTTBSSHHHHHHHHHHHHH-TEECEEE-----TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             cCCCeEEEe--eeEEEEEEEEecCcccccccHHHHHHHHHHC-CcEEecC-----CCEEEEECCCcCCHHHHHHHHHHHH
Confidence            344322111  234578888864322     22688888877 9999876     3789999877789999999999999


Q ss_pred             HHHHhc
Q 015729          368 MILKDV  373 (401)
Q Consensus       368 ~~l~~~  373 (401)
                      ++++++
T Consensus       442 ~~l~~~  447 (449)
T 3a8u_X          442 EVLNKL  447 (449)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            998764

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.95  E-value=1.8e-25  Score=214.24  Aligned_cols=289  Identities=14%  Similarity=0.094  Sum_probs=204.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH-H-HHHHHHcCCcEEEEeCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL-W-IDQQQRLNFNVDVVESDW  117 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~-~~~~~~~g~~~~~v~~~~  117 (401)
                      ..+...++++.+++++|.+  + .+++++|++|++.++.+++++||+|+++.+.|++.. + ...++..|++++.++.+ 
T Consensus       112 ~~~~~~~l~~~lA~l~g~~--~-~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-  187 (445)
T 1qgn_A          112 GNPTTVVLEEKISALEGAE--S-TLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA-  187 (445)
T ss_dssp             CCHHHHHHHHHHHHHHTCS--E-EEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS-
T ss_pred             CChHHHHHHHHHHHHhCCC--c-EEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-
Confidence            3467889999999999986  3 455566679999999988999999999999877654 2 22456789999999865 


Q ss_pred             CCCCChHHHHHHHhccCCCCc-eEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEE
Q 015729          118 GEGAKLDVLASKLAADTAHTI-KAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVAL  196 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~-~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~  196 (401)
                          |++++++++++    ++ ++|++++++||+|.+.|+++|.++|++  +|+++|+|++|+.+... .....++|+++
T Consensus       188 ----d~~~l~~ai~~----~tv~lV~le~p~NptG~v~dl~~I~~la~~--~g~~livD~a~~~~~~~-~~~~~g~Div~  256 (445)
T 1qgn_A          188 ----DVGALELALNQ----KKVNLFFTESPTNPFLRCVDIELVSKLCHE--KGALVCIDGTFATPLNQ-KALALGADLVL  256 (445)
T ss_dssp             ----CHHHHHHHHHH----SCEEEEEEESSCTTTCCCCCHHHHHHHHHH--TTCEEEEECTTTCTTTC-CTTTTTCSEEE
T ss_pred             ----CHHHHHHHhcc----CCCCEEEEeCCCCCCCcccCHHHHHHHHHH--cCCEEEEECCCcccccC-CccccCCEEEE
Confidence                89999999985    45 999999999999999999999999999  99999999999866432 33456899999


Q ss_pred             ecCCCcccCCCc---ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHH
Q 015729          197 TGSQKALSLPTG---MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLEN  273 (401)
Q Consensus       197 ~s~~K~l~g~~g---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~  273 (401)
                      +|.||+++ +.|   +|++++++++++++...             .. ..|    .+++...++.+..+++.     +..
T Consensus       257 ~S~sK~~g-g~gd~~~G~l~~~~~l~~~l~~~-------------~~-~~g----~~~~~~~a~~~~~~l~~-----l~~  312 (445)
T 1qgn_A          257 HSATKFLG-GHNDVLAGCISGPLKLVSEIRNL-------------HH-ILG----GALNPNAAYLIIRGMKT-----LHL  312 (445)
T ss_dssp             ECTTTTTT-CSSSCCCEEEEECHHHHHHHHHH-------------HH-HHC----CCCCHHHHHHHHHHGGG-----HHH
T ss_pred             ECCccccc-ccccceEEEEEECHHHHHHHHHH-------------HH-HhC----CCCCHHHHHHHHHhHHH-----HHH
Confidence            99999986 444   79999999887765421             01 112    13444433333333332     344


Q ss_pred             HHHHHHHHHHHHHHHHHHc-CC-ccccCC----Cc--------cCCceeEEEEcCCCC-CHHHHHHHHHhhCCeEEccCC
Q 015729          274 VIERHRRLGKATRLAVEAW-GL-KNCTQK----EE--------WFSDTVTAVIVPSHI-NSSEIVRRAWQRYNLSLGLGL  338 (401)
Q Consensus       274 ~~~~~~~~~~~l~~~L~~~-g~-~~~~~~----~~--------~~~~~~~~~~~~~~~-~~~~l~~~L~~~~~i~v~~g~  338 (401)
                      ..++..++++++.+.|++. ++ .+..+.    +.        ...+.+++|.++.+. +...+...|. .+++.+..|.
T Consensus       313 r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~-~~~i~~s~G~  391 (445)
T 1qgn_A          313 RVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALK-IPYIAPSFGG  391 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCS-SSEECSCCCS
T ss_pred             HHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCC-CceEeccCCC
Confidence            5666777888899999886 44 232221    00        124568889985321 1333444432 2356555553


Q ss_pred             CC-----------------------CCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          339 NK-----------------------VAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       339 ~~-----------------------~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .+                       ..++.+|||+.    .||+|.+++.|+++++.
T Consensus       392 ~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~  444 (445)
T 1qgn_A          392 CESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDS  444 (445)
T ss_dssp             SSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred             CceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence            21                       12468999865    57899999999998864

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.95  E-value=1.9e-26  Score=216.17  Aligned_cols=321  Identities=12%  Similarity=0.033  Sum_probs=210.8

Q ss_pred             ccccCCCcCChHHHHHHHccCcC---CCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCC--
Q 015729           11 HLFVPGPVHIPDQVIRAMNRNNE---DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGD--   85 (401)
Q Consensus        11 ~~~~~~p~~~~~~v~~a~~~~~~---~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd--   85 (401)
                      ..++.|+.+..+++++++.+...   ....+.......++++.+++++|.+.   .++++||++|+..++.+++.+||  
T Consensus        13 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~---~i~~~~G~~a~~~al~~~~~~gd~~   89 (357)
T 3lws_A           13 TGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGMDD---AVFFPSGTMAQQVALRIWSDETDNR   89 (357)
T ss_dssp             SEESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTCSE---EEEESCHHHHHHHHHHHHHHHHTCC
T ss_pred             cccccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCCCc---EEEecCcHHHHHHHHHHHhhcCCCc
Confidence            33466666666666665554321   11112223567799999999999854   45568889999998888888888  


Q ss_pred             eEEEEcCCcchHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCc-ccccc---hHHHH
Q 015729           86 RIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETAT-GVTNN---LSKVR  160 (401)
Q Consensus        86 ~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~t-G~~~~---l~~i~  160 (401)
                      .|++..+.|++.. ........|++++.++. .++.+|+++++++.      +++++++++|+||+ |.+.+   +++|.
T Consensus        90 ~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~d~~~l~~~~------~~~~v~~~~p~np~~G~~~~~~~l~~i~  162 (357)
T 3lws_A           90 TVAYHPLCHLEIHEQDGLKELHPIETILVGA-ADRLMTLDEIKALP------DIACLLLELPQREIGGVAPAFSELETIS  162 (357)
T ss_dssp             EEEECTTCHHHHSSTTHHHHHSSCEEEECSC-TTSCCCHHHHHTCC------SCSEEEEESSBGGGTSBCCCHHHHHHHH
T ss_pred             EEEecccceeeeeccchhhhccCcEEEEecC-CCCCcCHHHHhcCc------CcceEEEEcccccCCceeCCHHHHHHHH
Confidence            5555555444432 12244556888888874 44578999998762      26899999999998 98885   78899


Q ss_pred             HHhhhcCCCcEEEEecccccCcc-----e-eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccch
Q 015729          161 KLLDEYRHPALFLVDGVSSICAI-----D-FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW  234 (401)
Q Consensus       161 ~l~~~~~~~~~li~D~a~~~~~~-----~-~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~  234 (401)
                      ++|++  +|++||+|++|..+..     . .++. .+.|+++.|.||+++++.| |+++.++++++.+....        
T Consensus       163 ~~~~~--~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~~~~--------  230 (357)
T 3lws_A          163 RYCRE--RGIRLHLDGARLFEMLPYYEKTAAEIA-GLFDSIYISFYKGLGGIAG-AILAGPAAFCQTARIWK--------  230 (357)
T ss_dssp             HHHHH--TTCEEEEEETTHHHHHHHHTCCHHHHH-TTSSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHH--------
T ss_pred             HHHHH--cCCEEEEECchhhhhhhhcCCChHHHH-hcCCEEEEeccccCCCCce-EEEEcCHHHHHHHHHHH--------
Confidence            99999  9999999999762211     1 1111 3478889999999977777 99999998877664210        


Q ss_pred             HHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEc
Q 015729          235 KDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV  313 (401)
Q Consensus       235 ~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~  313 (401)
                          ..+ .+.  ..+.+... ++..++++..     .+..+++.++++++.+.|+++ |+++....   ....++++.+
T Consensus       231 ----~~~-~~~--~~~~~~~~-~~~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---~~~~~~~~~~  294 (357)
T 3lws_A          231 ----RRY-GGD--LISLYPYI-VSADYYYELR-----KDRMGQYYEQAKQLAEQFNALPGVHTTPEV---PVSNMFHLHF  294 (357)
T ss_dssp             ----HHT-TCC--CSCCHHHH-HHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHTSTTEEEESSS---CSSSEEEEEE
T ss_pred             ----HHh-cCC--cccchHHH-HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhCCCCeeccCC---CcceEEEEEe
Confidence                001 111  11122222 2222344321     123344677788899999987 87763211   1224677777


Q ss_pred             CCC--CCHHHHHHHHHhhCCeEEccCCCCCC-CcEEEEeecc---cCCHHHHHHHHHHHHHHH
Q 015729          314 PSH--INSSEIVRRAWQRYNLSLGLGLNKVA-GKVFRIGHLG---HLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       314 ~~~--~~~~~l~~~L~~~~~i~v~~g~~~~~-~~~~Ri~~~~---~~~~~di~~~~~~i~~~l  370 (401)
                      +..  .+..++.+.|.++ ||.++++..... ..++|++...   ..+++++++++++|.+++
T Consensus       295 ~~~~~~~~~~~~~~l~~~-Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          295 DGQAADISPKLEQVQEET-GLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             ESCHHHHHHHHHHHHHHH-CEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred             cCChHHHHHHHHHHHHhc-CeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence            543  2256788888776 999998844322 2368997643   357899999999988764

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.94  E-value=3.5e-26  Score=222.31  Aligned_cols=304  Identities=13%  Similarity=0.073  Sum_probs=204.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCC----CCCe---EEEEcCCcchHHHHHHHHHcCCcEEEE
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS----PGDR---IISFLIGQFSLLWIDQQQRLNFNVDVV  113 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~----~gd~---vl~~~~~~~~~~~~~~~~~~g~~~~~v  113 (401)
                      .....++++.++++++.+   .+++++|||+|++.++.++++    +||+   |++. ..|++.. .......|.+++.+
T Consensus        75 ~~~~~~l~~~la~~~~~~---~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~-~~~~~~~-~~~~~~~g~~~~~~  149 (467)
T 1ax4_A           75 SRNYYDLKDKAKELFNYD---YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFIS-NFHFDTT-AAHVELNGCKAINI  149 (467)
T ss_dssp             CHHHHHHHHHHHHHHCCC---EEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEE-SSCCHHH-HHHHHHTTCEEEEC
T ss_pred             CccHHHHHHHHHHHcCCC---cEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEe-ccccchh-hHHHhccCCceecc
Confidence            356779999999999874   499999999999999988887    9998   8888 5565543 34456678888776


Q ss_pred             eCC----------CCCCCChHHHHHHHhccCCCCceEEEEEecCCCc-ccccc---hHHHHHHhhhcCCCcEEEEecccc
Q 015729          114 ESD----------WGEGAKLDVLASKLAADTAHTIKAICIVHNETAT-GVTNN---LSKVRKLLDEYRHPALFLVDGVSS  179 (401)
Q Consensus       114 ~~~----------~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~t-G~~~~---l~~i~~l~~~~~~~~~li~D~a~~  179 (401)
                      +.+          .++.+|+++|++++++....++++|++++++||+ |.+++   +++|.++|++  +|+++|+|+++.
T Consensus       150 ~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~--~gi~li~De~~~  227 (467)
T 1ax4_A          150 VTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQ--HGIFVVMDSARF  227 (467)
T ss_dssp             BCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH--HTCCEEEECTTH
T ss_pred             cccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHH--cCCEEEEEchhh
Confidence            542          1346899999999975211257999999999999 78765   6789999999  999999999876


Q ss_pred             c-----------CcceeccCc------ccceEEEecCCCcccCCCcceEEEec-H-HHHHHhccCCCCccccchHHHHHH
Q 015729          180 I-----------CAIDFRMDE------WGIDVALTGSQKALSLPTGMGIVCAS-P-KALEASKTAKSVRVFFDWKDYIKF  240 (401)
Q Consensus       180 ~-----------~~~~~~~~~------~~~di~~~s~~K~l~g~~g~G~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
                      +           +....+...      ..+|++++|.||+++.+.| |+++.+ + ++.+.+....            ..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~~~~~~~~------------~~  294 (467)
T 1ax4_A          228 CENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIFTLARQRC------------VP  294 (467)
T ss_dssp             HHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHHHHHHHHH------------HH
T ss_pred             hhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCcc-eEEEeCCHHHHHHHHHhhc------------cc
Confidence            5           111111111      2368889999999854435 777777 6 6666543210            00


Q ss_pred             hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEE-------c
Q 015729          241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVI-------V  313 (401)
Q Consensus       241 ~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-------~  313 (401)
                      + .+....++.+...+.++..+++...+   +...++..++.+++.+.|++.|+++..+.    .+.++++.       +
T Consensus       295 ~-~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~----~~~~~~~~~~~~~~~~  366 (467)
T 1ax4_A          295 M-EGFVTYGGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLREAGIPIQYPT----GGHAVFVDCKKLVPQI  366 (467)
T ss_dssp             H-TCSTTTTTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTTCCBCSSC----CSSEEEEESTTTCTTS
T ss_pred             c-ccccccCCccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHhCCCCcccCC----CceEEEEehhhhcccc
Confidence            1 11111223444333334334443221   22344445777889999988777765432    23466677       3


Q ss_pred             CC-CCCHHHHHHHH-HhhCCeEEcc-CCC---C---------CCCcEEEEeecc-cCCHHHHHHHHHHHHHHHHhc
Q 015729          314 PS-HINSSEIVRRA-WQRYNLSLGL-GLN---K---------VAGKVFRIGHLG-HLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       314 ~~-~~~~~~l~~~L-~~~~~i~v~~-g~~---~---------~~~~~~Ri~~~~-~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +. +.+..++++.| .++ ||.+.+ |..   .         ...+++||++.. .+|++|+++++++|++++++.
T Consensus       367 ~~~~~~~~~l~~~L~~~~-gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~  441 (467)
T 1ax4_A          367 PGDQFPAQAVINALYLES-GVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF  441 (467)
T ss_dssp             CGGGCHHHHHHHHHHHHH-CEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred             ccCCCCHHHHHHHHHHhc-CceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhh
Confidence            21 23567899998 555 999987 421   0         013689998874 489999999999999988764

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.94  E-value=1.6e-25  Score=216.68  Aligned_cols=326  Identities=11%  Similarity=0.067  Sum_probs=216.7

Q ss_pred             hHHHHHHHccCcCC---CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC-----C---CCCeEEE
Q 015729           21 PDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-----S---PGDRIIS   89 (401)
Q Consensus        21 ~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~-----~---~gd~vl~   89 (401)
                      +|++++++.+....   .......+...++++.++++++.+..  +++++||++|++.++....     .   ++++|++
T Consensus        67 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~--v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~  144 (452)
T 3n5m_A           67 RKELAEAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWLGGEYV--IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMS  144 (452)
T ss_dssp             CHHHHHHHHHHHTTCCCCCTTSEEHHHHHHHHHHHHHHTSCEE--EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEE
T ss_pred             CHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHhCCCCce--EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            56666666654322   11223456778999999999886543  9999999999999987755     4   7899999


Q ss_pred             EcCCcchHHHHHHHHHcCC------------cEEEEeCCCCCCC---C---------hHHHHHHHhccCCCCceEEEEEe
Q 015729           90 FLIGQFSLLWIDQQQRLNF------------NVDVVESDWGEGA---K---------LDVLASKLAADTAHTIKAICIVH  145 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~---d---------~~~le~~~~~~~~~~~~~i~~~~  145 (401)
                      .+++|++........ .+.            ....++.......   |         +++||+++++...+++++|+++.
T Consensus       145 ~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep  223 (452)
T 3n5m_A          145 RYRGYHGNTMATMAA-TGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEP  223 (452)
T ss_dssp             ETTCCCCSSHHHHHS-CCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECS
T ss_pred             ECCCcCCCCHHHHhc-CCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEcc
Confidence            999988765322211 111            2344443221111   2         78999998721113578888888


Q ss_pred             c-CCCcccccc----hHHHHHHhhhcCCCcEEEEecccccC-cc--e--eccCcccceEEEecCCCcccCC-CcceEEEe
Q 015729          146 N-ETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSIC-AI--D--FRMDEWGIDVALTGSQKALSLP-TGMGIVCA  214 (401)
Q Consensus       146 ~-~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~-~~--~--~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~  214 (401)
                      + +| +|.+.+    +++|.++|++  +|+++|+|++|+.. ..  .  .+.....+|++++|  |+++++ .++|++++
T Consensus       224 ~~~n-~G~~~~~~~~l~~l~~l~~~--~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~s--K~l~~G~~~ig~~~~  298 (452)
T 3n5m_A          224 IITG-GGILMAPQDYMKAVHETCQK--HGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMA--KGITSAYLPLSATAV  298 (452)
T ss_dssp             SBTT-TTCBCCCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSCCEEEEE
T ss_pred             ccCC-CCeeeCCHHHHHHHHHHHHH--cCCEEEEecchhCCCcccccchhhhcCCCCCEEeec--ccccCCCcceEEEEE
Confidence            8 89 998886    8999999999  99999999998732 11  1  22223346777665  888766 67899999


Q ss_pred             cHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--
Q 015729          215 SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--  292 (401)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--  292 (401)
                      ++++.+.+........          +..+  .+++.++..+++..++++.+.++   ...++.+++.+++++.|+++  
T Consensus       299 ~~~i~~~~~~~~~~~~----------~~~~--~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~  363 (452)
T 3n5m_A          299 KREIYEAFKGKGEYEF----------FRHI--NTFGGNPAACALALKNLEIIENE---NLIERSAQMGSLLLEQLKEEIG  363 (452)
T ss_dssp             EHHHHGGGCSSSTTCS----------CCCC--CSSTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHhhccCCCC----------cccc--CCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHh
Confidence            9999887753100000          0001  13456677777888888877654   35667777778888888764  


Q ss_pred             CCccccCCCccCCceeEEEEcCCCCC---------HHHHHHHHHhhCCeEEccCCCC--CCCcEEEEeecccCCHHHHHH
Q 015729          293 GLKNCTQKEEWFSDTVTAVIVPSHIN---------SSEIVRRAWQRYNLSLGLGLNK--VAGKVFRIGHLGHLNELQLLG  361 (401)
Q Consensus       293 g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~L~~~~~i~v~~g~~~--~~~~~~Ri~~~~~~~~~di~~  361 (401)
                      .+.......  ..+.++++.+.+...         ..++++.|.++ ||.+.++..+  ..++++||++....|++|+++
T Consensus       364 ~~~~~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~  440 (452)
T 3n5m_A          364 EHPLVGDIR--GKGLLVGIELVNDKETKEPIDNDKIASVVNACKEK-GLIIGRNGMTTAGYNNILTLAPPLVISSEEIAF  440 (452)
T ss_dssp             TCTTEEEEE--ESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHT-TEECEECTTSSTTCCCEEEECCCTTCCHHHHHH
T ss_pred             cCCCeEEEE--EEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHC-CcEEeecCcccCCCCCEEEEECCCCCCHHHHHH
Confidence            333222111  233455565521110         24688888876 9999887532  235789998888889999999


Q ss_pred             HHHHHHHHHHh
Q 015729          362 CLAGVEMILKD  372 (401)
Q Consensus       362 ~~~~i~~~l~~  372 (401)
                      ++++|++++++
T Consensus       441 ~l~~l~~~l~~  451 (452)
T 3n5m_A          441 VIGTLKTAMER  451 (452)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999998864

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.94  E-value=1.1e-25  Score=226.74  Aligned_cols=310  Identities=8%  Similarity=0.010  Sum_probs=226.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC---
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG---  118 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~---  118 (401)
                      ....++++.+++++|.+.  .+++++|+++|+..++.+++++||+|++..++|.+... ..++..|++++.++.+.+   
T Consensus       173 ~~i~e~e~~lA~~~gae~--~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~-~~~~l~Ga~~v~v~~~~~~~~  249 (730)
T 1c4k_A          173 GPAVAAEKHAARVYNADK--TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYN-SALAMAGGRPVYLQTNRNPYG  249 (730)
T ss_dssp             THHHHHHHHHHHHTTCSE--EEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHH-HHTTTTCCEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHHHHCCCc--EEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHH-HHHHHCCCEEEEEeCCccccC
Confidence            457899999999999875  36778888899999999999999999999999888763 226678999988876432   


Q ss_pred             --CCCChHHH-----HHHHhcc-C----CCCc-eEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcc--
Q 015729          119 --EGAKLDVL-----ASKLAAD-T----AHTI-KAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI--  183 (401)
Q Consensus       119 --~~~d~~~l-----e~~~~~~-~----~~~~-~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~--  183 (401)
                        +.+|++++     +++++++ +    ..++ ++++++++ |++|.+.|+++|.++|++  +|+++|+|++|+.+..  
T Consensus       250 i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~--~g~~livDeAh~~~~~f~  326 (730)
T 1c4k_A          250 FIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGH--LCDYIEFDSAWVGYEQFI  326 (730)
T ss_dssp             CEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGG--GBSEEEEECTTCCGGGSS
T ss_pred             ccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHH--cCCeEEEEcccccccccC
Confidence              33688888     8888753 1    0123 88999987 689999999999999999  9999999999974311  


Q ss_pred             -------eeccCcccce----EEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHH---HHHHhhcCCCCCC
Q 015729          184 -------DFRMDEWGID----VALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKD---YIKFYNLGTFWPY  249 (401)
Q Consensus       184 -------~~~~~~~~~d----i~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~  249 (401)
                             +++.+..++|    ++++|.||+++|+.+.|+++++++.+.   .   ...+.+...   ....+.     ..
T Consensus       327 ~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~---g---~~~~i~~~~~~~~~~~~~-----st  395 (730)
T 1c4k_A          327 PMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIK---G---QLRYCDHKHFNNSFNLFM-----ST  395 (730)
T ss_dssp             GGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGT---T---STTCCCHHHHHHHHHHHS-----CS
T ss_pred             cccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhc---C---cccccCHHHHHHHHHHhC-----CC
Confidence                   1222233677    999999999987777788888776431   1   011122111   112222     33


Q ss_pred             CCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-c-CCccccCCC--------------------------
Q 015729          250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA-W-GLKNCTQKE--------------------------  301 (401)
Q Consensus       250 ~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~--------------------------  301 (401)
                      +++...++++.+|++.+..++.+...++..++.+++++.|++ + |+++..+..                          
T Consensus       396 sp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (730)
T 1c4k_A          396 SPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKG  475 (730)
T ss_dssp             SCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTT
T ss_pred             CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCcc
Confidence            588888889999998877633356778899999999999998 4 887755321                          


Q ss_pred             ------c-c-C-----CceeEEEEcCC-----------CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHH
Q 015729          302 ------E-W-F-----SDTVTAVIVPS-----------HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNEL  357 (401)
Q Consensus       302 ------~-~-~-----~~~~~~~~~~~-----------~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~  357 (401)
                            . . .     .++.+.+..|.           ++++.++.+.|.++ ||.+...    ....+|+++...+|++
T Consensus       476 ~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~-GI~v~~~----~~~~ir~~~s~g~t~e  550 (730)
T 1c4k_A          476 AKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDH-GIIPEKS----DLNSILFLMTPAETPA  550 (730)
T ss_dssp             CTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHT-TCCCSEE----CSSEEEEECCTTCCHH
T ss_pred             chhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHC-CcEEEEC----CCCeEEEEeCCCCCHH
Confidence                  0 0 0     11224566642           46788999999877 9887543    2457899888889999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 015729          358 QLLGCLAGVEMILKDV  373 (401)
Q Consensus       358 di~~~~~~i~~~l~~~  373 (401)
                      |+++++++|+++.++.
T Consensus       551 ~i~~Ll~aL~~i~~~~  566 (730)
T 1c4k_A          551 KMNNLITQLLQLQRLI  566 (730)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999987755

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.94  E-value=3.3e-25  Score=214.90  Aligned_cols=328  Identities=16%  Similarity=0.091  Sum_probs=214.7

Q ss_pred             hHHHHHHHccCcC----CCC-CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC--------CCCCeE
Q 015729           21 PDQVIRAMNRNNE----DYR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--------SPGDRI   87 (401)
Q Consensus        21 ~~~v~~a~~~~~~----~~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~--------~~gd~v   87 (401)
                      ++.+++++.+...    .+. .....+...++.++++++++... +++++++||++|++.++....        .++++|
T Consensus        69 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~v  147 (460)
T 3gju_A           69 RQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGM-SRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKI  147 (460)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSCTTE-EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred             CHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCCCCc-CEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence            4666666655321    111 12234567789999999876544 459999999999999987755        356899


Q ss_pred             EEEcCCcchHHHHHHHHH-----------cCCcEEEEeCCCCC-----CCC--------hHHHHHHHhccCCCCceEEEE
Q 015729           88 ISFLIGQFSLLWIDQQQR-----------LNFNVDVVESDWGE-----GAK--------LDVLASKLAADTAHTIKAICI  143 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~~-----------~g~~~~~v~~~~~~-----~~d--------~~~le~~~~~~~~~~~~~i~~  143 (401)
                      ++.+++||+.........           ....+..++.+...     ..+        +++|++++++...+++++|++
T Consensus       148 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~  227 (460)
T 3gju_A          148 ISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIG  227 (460)
T ss_dssp             EEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEE
T ss_pred             EEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999999887663222110           11245566643311     123        588999887422135788888


Q ss_pred             EecCCCcccccc----hHHHHHHhhhcCCCcEEEEecccc-cCcc--ee--ccCcccceEEEecCCCcccCC-CcceEEE
Q 015729          144 VHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSS-ICAI--DF--RMDEWGIDVALTGSQKALSLP-TGMGIVC  213 (401)
Q Consensus       144 ~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~-~~~~--~~--~~~~~~~di~~~s~~K~l~g~-~g~G~l~  213 (401)
                      +.+++++|.+.+    +++|.++|++  +|+++|+|++|+ +|..  .+  +.....+|++++|  |+++++ .++|+++
T Consensus       228 ep~~~~~G~~~~~~~~l~~l~~l~~~--~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~l~gG~~~lg~v~  303 (460)
T 3gju_A          228 EPILGTGGIVPPPAGYWEKIQAVLKK--YDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIA--KGLTSAYAPLSGVI  303 (460)
T ss_dssp             CSSBSTTTSBCCCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEEC--GGGTTTSSCCEEEE
T ss_pred             CCccCCCCCccCCHHHHHHHHHHHHH--cCCEEEEeccccCCCcccccchHhhcCCCCCeeeee--hhhcCCCCCeEEEE
Confidence            888888998765    8999999999  999999999988 3211  11  2122346777765  999765 5789999


Q ss_pred             ecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-
Q 015729          214 ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-  292 (401)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-  292 (401)
                      +++++.+.+....         .....+..+  .+++.++..+++..++++.+..++   ..++.+++.+++++.|.+. 
T Consensus       304 ~~~~i~~~~~~~~---------~~~~~~~~~--~t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~l~~~l  369 (460)
T 3gju_A          304 VADRVWQVLVQGS---------DKLGSLGHG--WTYSAHPICVAAGVANLELIDEMD---LVTNAGETGAYFRAELAKAV  369 (460)
T ss_dssp             EEHHHHHHHHHHH---------HHHCSCSCC--CTTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHH
T ss_pred             ECHHHHHHHhccc---------ccccccccC--CCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHH
Confidence            9999888774210         000000111  234566777788888888776643   4556666666666666442 


Q ss_pred             -CCccccCCCccCCceeEEEEcCCCCC-----------HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHH
Q 015729          293 -GLKNCTQKEEWFSDTVTAVIVPSHIN-----------SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL  360 (401)
Q Consensus       293 -g~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~  360 (401)
                       .........  ..+.++++.+++...           ..++.+.|.++ ||.++++.   .++++||++....|++|++
T Consensus       370 ~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~---~~~~iRi~~~~~~t~e~i~  443 (460)
T 3gju_A          370 GGHKNVGEVR--GDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAAS-GVIGRAMP---QGDILGFAPPLCLTREQAD  443 (460)
T ss_dssp             TTSTTEEEEE--EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECEECS---SSCEEEECCCTTCCHHHHH
T ss_pred             hcCCCeEEEe--eeeEEEEEEEccCccccccccchHHHHHHHHHHHHHC-CeEEecCC---CCCEEEEECCCCCCHHHHH
Confidence             232221111  223466677643211           45788888877 99988764   2578999887788999999


Q ss_pred             HHHHHHHHHHHhc
Q 015729          361 GCLAGVEMILKDV  373 (401)
Q Consensus       361 ~~~~~i~~~l~~~  373 (401)
                      +++++|+++++++
T Consensus       444 ~~l~~l~~~l~~~  456 (460)
T 3gju_A          444 IVVSKTADAVKSV  456 (460)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.94  E-value=1.6e-25  Score=214.45  Aligned_cols=312  Identities=13%  Similarity=0.037  Sum_probs=211.1

Q ss_pred             hHHHHHHHccCcCC--CCC--ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCC-CCCeEEEEcCCcc
Q 015729           21 PDQVIRAMNRNNED--YRS--PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS-PGDRIISFLIGQF   95 (401)
Q Consensus        21 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~-~gd~vl~~~~~~~   95 (401)
                      ++.+++++.+....  +.+  ....+...++++.+++++|.+.++++++++|+++|++.++..... +||+|+++++.|+
T Consensus        61 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh  140 (419)
T 2eo5_A           61 HPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFH  140 (419)
T ss_dssp             CHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCC
T ss_pred             CHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcC
Confidence            67788877764322  111  123355678999999999986334699999999999998865332 3899999999887


Q ss_pred             hHHHHHHHH-------Hc-----CCcEEEEeCCCCCC----------------CChHHHH-HHHhccCC-CCceEEEEEe
Q 015729           96 SLLWIDQQQ-------RL-----NFNVDVVESDWGEG----------------AKLDVLA-SKLAADTA-HTIKAICIVH  145 (401)
Q Consensus        96 ~~~~~~~~~-------~~-----g~~~~~v~~~~~~~----------------~d~~~le-~~~~~~~~-~~~~~i~~~~  145 (401)
                      +........       ..     ..+++.++.+.+..                +|+++++ +++++... ++++++++++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p  220 (419)
T 2eo5_A          141 GRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEP  220 (419)
T ss_dssp             CSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECS
T ss_pred             CCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeC
Confidence            654221110       11     13677777754422                3578999 88874210 1456677666


Q ss_pred             cCCCcccccc----hHHHHHHhhhcCCCcEEEEecccc-cCcc--e--eccCcccceEEEecCCCcccCC-CcceEEEec
Q 015729          146 NETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSS-ICAI--D--FRMDEWGIDVALTGSQKALSLP-TGMGIVCAS  215 (401)
Q Consensus       146 ~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~-~~~~--~--~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~  215 (401)
                      ++|++|.+.+    +++|.++|++  +|+++|+|++|+ ++..  .  ++.....+|++++  +|+++++ .++|+++++
T Consensus       221 ~~~~tG~~~~~~~~l~~l~~l~~~--~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~--sK~~~~G~~riG~~~~~  296 (419)
T 2eo5_A          221 IQGEGGYVIPPKNFFAELQKLAKK--YGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITL--AKALGGGIMPIGATIFR  296 (419)
T ss_dssp             SBTTTTSBCCCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTTSCCEEEEEE
T ss_pred             ccCCCCCccCCHHHHHHHHHHHHH--cCCEEEEeccccCCccCcchhhHHhcCCCCCEEEe--cccccCCccceEEEEEc
Confidence            6678998765    8999999999  999999999997 3321  1  1222335677654  5999876 778999999


Q ss_pred             HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCc
Q 015729          216 PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK  295 (401)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~  295 (401)
                      +++. .+ ...               . +  .+++.+...++++.++++...+     ..++++++++++.+.|+++ +.
T Consensus       297 ~~~~-~~-~~~---------------~-~--~t~~~n~~~~~aa~aal~~~~~-----~~~~~~~~~~~l~~~L~~~-~~  350 (419)
T 2eo5_A          297 KDLD-FK-PGM---------------H-S--NTFGGNALACAIGSKVIDIVKD-----LLPHVNEIGKIFAEELQGL-AD  350 (419)
T ss_dssp             GGGC-CC-------------------------CCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTS-SS
T ss_pred             hHhh-cC-Ccc---------------c-C--CCCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHh-hh
Confidence            8865 43 100               0 1  1334567777777888876432     6778888899999998775 22


Q ss_pred             cccCCCccCCceeEEEEc-CCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          296 NCTQKEEWFSDTVTAVIV-PSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ...     ..+.++++.+ ++..... +.+.|.++ ||.+.++.    ++++||++....+++|+++++++|+++++++
T Consensus       351 ~~~-----~~g~~~~i~~~~~~~~~~-~~~~l~~~-Gv~v~~~~----~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~  418 (419)
T 2eo5_A          351 DVR-----GIGLAWGLEYNEKKVRDR-IIGESFKR-GLLLLPAG----RSAIRVIPPLVISEEEAKQGLDILKKVIKVV  418 (419)
T ss_dssp             EEE-----EETTEEEEECSCHHHHHH-HHHHHHHT-TEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             heE-----eeeEEEEEEEecCccHHH-HHHHHHHC-CCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            221     1234666777 3211245 88888765 99998763    5689998776789999999999999998764

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.94  E-value=4.4e-26  Score=219.40  Aligned_cols=326  Identities=12%  Similarity=0.081  Sum_probs=217.6

Q ss_pred             hHHHHHHHccCcCC--CCC-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC--CCCCeEEEEcCCcc
Q 015729           21 PDQVIRAMNRNNED--YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--SPGDRIISFLIGQF   95 (401)
Q Consensus        21 ~~~v~~a~~~~~~~--~~~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~--~~gd~vl~~~~~~~   95 (401)
                      ++++++++.+....  +.. ....+...++++.++++++.+. +++++++||++|++.++....  ..+++|++.+++||
T Consensus        61 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yh  139 (433)
T 1zod_A           61 HPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGL-DRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWH  139 (433)
T ss_dssp             CHHHHHHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTC-CEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCC
T ss_pred             CHHHHHHHHHHHHhCcccccccCCHHHHHHHHHHHHhCCCCc-CEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcC
Confidence            67777777664321  111 1123566789999999998754 459999999999999986532  34679999999888


Q ss_pred             hHHHHHHHHH----------cCCcEEEEeCCCCC------------CCChHHHHHHHhccCCCCceEEEEEecCCCcccc
Q 015729           96 SLLWIDQQQR----------LNFNVDVVESDWGE------------GAKLDVLASKLAADTAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        96 ~~~~~~~~~~----------~g~~~~~v~~~~~~------------~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~  153 (401)
                      +.........          ....+..++.+...            .+|++++++++++...+++++++++.++|++|.+
T Consensus       140 g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~  219 (433)
T 1zod_A          140 GMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGII  219 (433)
T ss_dssp             CSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCE
T ss_pred             CCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcc
Confidence            7653222110          01244555543211            1358999999874211256777777667889987


Q ss_pred             cc----hHHHHHHhhhcCCCcEEEEecccc-cCcc--e--eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhcc
Q 015729          154 NN----LSKVRKLLDEYRHPALFLVDGVSS-ICAI--D--FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKT  224 (401)
Q Consensus       154 ~~----l~~i~~l~~~~~~~~~li~D~a~~-~~~~--~--~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~  224 (401)
                      .+    +++|.++|++  +|+++|+|++|+ ++..  .  ++.....+|++++  +|+++++.++|++++++++.+.+..
T Consensus       220 ~~~~~~l~~l~~l~~~--~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~--sK~~~~G~~ig~~~~~~~~~~~~~~  295 (433)
T 1zod_A          220 ELPDGYMAALKRKCEA--RGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTL--SKTLGAGLPLAAIVTSAAIEERAHE  295 (433)
T ss_dssp             ECCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE--CHHHHTTSSCEEEEECHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH--hCCEEEEeccccCCCcCchHhHHhhcCCCCCEEEe--cccccCCCCeeEEEEhHHHHHhhcc
Confidence            65    8999999999  999999999998 4311  1  1212234676654  5999876678999999998777654


Q ss_pred             CCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCc
Q 015729          225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEE  302 (401)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~  302 (401)
                      ...                .....++.++..++++.++++.+.+.+   ..++..++.+++++.|+++  .+....... 
T Consensus       296 ~~~----------------~~~~t~~~~~~~~~a~~aal~~~~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~-  355 (433)
T 1zod_A          296 LGY----------------LFYTTHVSDPLPAAVGLRVLDVVQRDG---LVARANVMGDRLRRGLLDLMERFDCIGDVR-  355 (433)
T ss_dssp             TTC----------------CCCCTTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEE-
T ss_pred             CCC----------------CCCCCCCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-
Confidence            210                000133456777778888888776643   5667777888888888774  233221111 


Q ss_pred             cCCceeEEEEcCCC--------CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          303 WFSDTVTAVIVPSH--------INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       303 ~~~~~~~~~~~~~~--------~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                       ..+.++++.+++.        .+..++.+.|.++ ||.+.++.....++++||++....+++|+++++++|+++++++
T Consensus       356 -~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~  432 (433)
T 1zod_A          356 -GRGLLLGVEIVKDRRTKEPADGLGAKITRECMNL-GLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA  432 (433)
T ss_dssp             -EETTEEEEEEEEETTTTEECTTHHHHHHHHHHHT-TEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             -EEEEEEEEEEecCccccCCChHHHHHHHHHHHHC-CCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence             1234667776431        2356788888865 9999887542223789998777789999999999999988753

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.94  E-value=4.1e-25  Score=210.58  Aligned_cols=288  Identities=15%  Similarity=0.113  Sum_probs=201.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDW  117 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~  117 (401)
                      ..+...++++.+++++|.+.   +++++||++|+..++.+++++||+|+++.+.|++..  +...+...|++++.++.+ 
T Consensus        79 ~~p~~~~l~~~la~~~g~~~---~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-  154 (414)
T 3ndn_A           79 GNPTVSVFEERLRLIEGAPA---AFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-  154 (414)
T ss_dssp             CCHHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-
T ss_pred             CChHHHHHHHHHHHHHCCCc---EEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-
Confidence            34678899999999998743   788999999999999999999999999999888765  333456689999999876 


Q ss_pred             CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEe
Q 015729          118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT  197 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~  197 (401)
                          |++++++++++    ++++|++++++||+|.+.|+++|.++|++  +|+++|+|++++.+... .....++|+++.
T Consensus       155 ----d~~~l~~ai~~----~t~~v~le~p~NptG~~~~l~~i~~la~~--~g~~livDe~~~~~~~~-~~~~~g~div~~  223 (414)
T 3ndn_A          155 ----DLSQWERALSV----PTQAVFFETPSNPMQSLVDIAAVTELAHA--AGAKVVLDNVFATPLLQ-QGFPLGVDVVVY  223 (414)
T ss_dssp             ----CHHHHHHHTSS----CCSEEEEESSCTTTCCCCCHHHHHHHHHH--TTCEEEEECTTTHHHHC-CCGGGTCSEEEE
T ss_pred             ----CHHHHHHhcCC----CCeEEEEECCCCCCCccccHHHHHHHHHH--cCCEEEEECCCcccccC-CchhcCCCeEec
Confidence                89999999974    56999999999999999999999999999  99999999999865432 223567899999


Q ss_pred             cCCCcccCCC--cceEEEecHHHHH-HhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHH
Q 015729          198 GSQKALSLPT--GMGIVCASPKALE-ASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENV  274 (401)
Q Consensus       198 s~~K~l~g~~--g~G~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~  274 (401)
                      |.+|++++..  .+|+++++++.+. .+...            ...+  |    .+.+....+.+...+     ..+...
T Consensus       224 S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~------------~~~~--g----~~~~~~~a~~~~~~l-----~~l~~r  280 (414)
T 3ndn_A          224 SGTKHIDGQGRVLGGAILGDREYIDGPVQKL------------MRHT--G----PAMSAFNAWVLLKGL-----ETLAIR  280 (414)
T ss_dssp             ETTTTTTCSSCCCCEEEEECHHHHTTHHHHH------------HHHH--C----CCCCHHHHHHHHHHG-----GGHHHH
T ss_pred             cCCccccCCCCceEEEEEECHHHHHHHHHHH------------HHHc--C----CCCCHHHHHHHHHHH-----HHHHHH
Confidence            9999995422  2699999988654 33211            0111  2    124443222222222     234567


Q ss_pred             HHHHHHHHHHHHHHHHHc-CCccc-cCC-Cc-----------cCCceeEEEEcCCC-----CCHHHHHHHHHhhCCeEEc
Q 015729          275 IERHRRLGKATRLAVEAW-GLKNC-TQK-EE-----------WFSDTVTAVIVPSH-----INSSEIVRRAWQRYNLSLG  335 (401)
Q Consensus       275 ~~~~~~~~~~l~~~L~~~-g~~~~-~~~-~~-----------~~~~~~~~~~~~~~-----~~~~~l~~~L~~~~~i~v~  335 (401)
                      .++..++++.+.+.|++. ++... .+. +.           ...+.+++|.++.+     .+..++.+.|. .+++.+.
T Consensus       281 ~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~-~~~~~~s  359 (414)
T 3ndn_A          281 VQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMR-LIDISNN  359 (414)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCS-SSEECSC
T ss_pred             HHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCc-cceEcCC
Confidence            778888899999999875 33211 111 00           12356889999532     12344555553 3355555


Q ss_pred             cCCC-----------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          336 LGLN-----------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       336 ~g~~-----------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      .|..                       ...++.+|+|+.    .|+++.+++.|+.+|
T Consensus       360 ~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG----~e~~~dli~dl~~al  413 (414)
T 3ndn_A          360 LGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVG----LEDTDDLIADIDRAL  413 (414)
T ss_dssp             CSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECC----SSCHHHHHHHHHHHH
T ss_pred             CCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeC----cCCHHHHHHHHHHhh
Confidence            4421                       123567999864    466777777777665

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.94  E-value=7.6e-25  Score=208.58  Aligned_cols=293  Identities=11%  Similarity=0.091  Sum_probs=200.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDW  117 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~  117 (401)
                      ......++++.+++++|.+.   .++++||++|++.++.+++++||+|+++.+.|++..  +...++..|++++.++.+ 
T Consensus        80 ~~p~~~~le~~lA~l~g~~~---~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~-  155 (415)
T 2fq6_A           80 GTLTHFSLQQAMCELEGGAG---CVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL-  155 (415)
T ss_dssp             CCHHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT-
T ss_pred             CCchHHHHHHHHHHHhCCCe---EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCC-
Confidence            34667899999999999753   566789999999999999999999999999888765  323456679999998754 


Q ss_pred             CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEe
Q 015729          118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT  197 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~  197 (401)
                          |++++++++++    ++++|++++++||+|.+.|+++|.++|++.++|+++|+|++|+.+..... ...++|++++
T Consensus       156 ----d~~~le~ai~~----~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p-~~~g~Div~~  226 (415)
T 2fq6_A          156 ----IGADIVKHLQP----NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKA-LDFGIDVSIQ  226 (415)
T ss_dssp             ----CGGGGGGGCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCG-GGGTCSEEEE
T ss_pred             ----CHHHHHHhhcc----CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCc-cccCCeEEEE
Confidence                79999998874    57999999999999999999999999998557899999999986532111 2467999999


Q ss_pred             cCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHH
Q 015729          198 GSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI  275 (401)
Q Consensus       198 s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  275 (401)
                      |.||+++++.+  .|+++.+++.++++...            ...  .|.    +.+....+.+..+++.     +....
T Consensus       227 S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~------------~~~--~G~----~~~~~~a~~~~~~l~~-----l~~r~  283 (415)
T 2fq6_A          227 AATKYLVGHSDAMIGTAVCNARCWEQLREN------------AYL--MGQ----MVDADTAYITSRGLRT-----LGVRL  283 (415)
T ss_dssp             ETTTTTTCSSSCCCEEEEECTTTHHHHHHH------------HHH--TTC----CCCHHHHHHHHHHHHH-----HHHHH
T ss_pred             eCccccCCCCCceEEEEEeCHHHHHHHHHH------------HHh--cCC----CCCHHHHHHHHhhhhH-----HHHHH
Confidence            99999965432  59999988766655421            011  121    2344323323333332     34566


Q ss_pred             HHHHHHHHHHHHHHHHc-CCc-cccC----CCc--------cCCceeEEEEcCCCCCHHHHHHHHHh--hCCeEEccCCC
Q 015729          276 ERHRRLGKATRLAVEAW-GLK-NCTQ----KEE--------WFSDTVTAVIVPSHINSSEIVRRAWQ--RYNLSLGLGLN  339 (401)
Q Consensus       276 ~~~~~~~~~l~~~L~~~-g~~-~~~~----~~~--------~~~~~~~~~~~~~~~~~~~l~~~L~~--~~~i~v~~g~~  339 (401)
                      ++..++.+.+.+.|++. .+. +..+    .+.        ...+.+++|.++.+.+..+....+..  .+++.++.|..
T Consensus       284 ~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G~~  363 (415)
T 2fq6_A          284 RQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGY  363 (415)
T ss_dssp             HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCCSS
T ss_pred             HHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCCCC
Confidence            67778888888888875 221 1111    000        12456888999643223333333321  22344443311


Q ss_pred             ---------------------CCCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          340 ---------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       340 ---------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                                           ...++.+|+|+....++++++.+.++|++
T Consensus       364 ~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~  413 (415)
T 2fq6_A          364 ESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR  413 (415)
T ss_dssp             SCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred             ceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence                                 01246799998887778888888887753

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.94  E-value=5.9e-25  Score=223.30  Aligned_cols=306  Identities=9%  Similarity=0.006  Sum_probs=225.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC--
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--  118 (401)
                      ...+.++++.+++++|.+.  .+++++|+++|+..++.+++++||+|+++.++|++...  .+...|++++.++.+.+  
T Consensus       204 ~g~v~~~ee~la~l~G~d~--~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~--~~~~~G~~~v~v~~~~~~~  279 (755)
T 2vyc_A          204 TGAFGESEKYAARVFGADR--SWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQ--GLMLTGAKPVYMVPSRNRY  279 (755)
T ss_dssp             CHHHHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--HHHHHCCEEEEECCCBCTT
T ss_pred             ccHHHHHHHHHHHHhCCCc--eEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHH--HHHHcCCEEEEEeCCCCcc
Confidence            3557789999999999864  36778888899999999999999999999999988763  35668999999987643  


Q ss_pred             ---CCC-----ChHHHHHHHhccC------CCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcce
Q 015729          119 ---EGA-----KLDVLASKLAADT------AHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID  184 (401)
Q Consensus       119 ---~~~-----d~~~le~~~~~~~------~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~  184 (401)
                         +.+     |++++++++++++      ..++++++++++ |++|.+.|+++|.++|++  +|+++|+|++|+.+...
T Consensus       280 g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~--~~~~livDeA~~~~~~~  356 (755)
T 2vyc_A          280 GIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEK--TSDRLHFDEAWYGYARF  356 (755)
T ss_dssp             SCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTT--TCSEEEEECTTCTTGGG
T ss_pred             ccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHH--cCCEEEEECcCchhccc
Confidence               235     9999999997632      013458899986 799999999999999999  99999999999753211


Q ss_pred             ec----cCc-cc--ceE------EEecCCCcccCCCcceEEEecHH--HHHHhccCCCCccccchHHHHHHhhcCCCCCC
Q 015729          185 FR----MDE-WG--IDV------ALTGSQKALSLPTGMGIVCASPK--ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY  249 (401)
Q Consensus       185 ~~----~~~-~~--~di------~~~s~~K~l~g~~g~G~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  249 (401)
                      ..    ... .+  +|+      +++|+||+++|+.+.|+++++++  ..+          ...+......+.     .+
T Consensus       357 ~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~----------~~~~~~~~~~~~-----s~  421 (755)
T 2vyc_A          357 NPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAIN----------FSRFNQAYMMHA-----TT  421 (755)
T ss_dssp             CGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCC----------HHHHHHHHHHTS-----CS
T ss_pred             CcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccC----------HHHHHHHHHHhC-----CC
Confidence            00    111 24  455      99999999988777788888765  110          000111112222     34


Q ss_pred             CCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-C---------CccccCCCc-----------------
Q 015729          250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-G---------LKNCTQKEE-----------------  302 (401)
Q Consensus       250 ~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g---------~~~~~~~~~-----------------  302 (401)
                      +++...++++.+|++.+...|.+...++..++.+++++.|+++ |         ++++.+...                 
T Consensus       422 sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (755)
T 2vyc_A          422 SPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTK  501 (755)
T ss_dssp             SCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHH
T ss_pred             CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccch
Confidence            5888899999999998876644778889999999999999886 5         554443210                 


Q ss_pred             ------------------------c----CCceeEEEEcCC----------CCCHHHHHHHHHhhCCeEEccCCCCCCCc
Q 015729          303 ------------------------W----FSDTVTAVIVPS----------HINSSEIVRRAWQRYNLSLGLGLNKVAGK  344 (401)
Q Consensus       303 ------------------------~----~~~~~~~~~~~~----------~~~~~~l~~~L~~~~~i~v~~g~~~~~~~  344 (401)
                                              .    ..+..+.+.++.          |+++..+.+.|.+ +||.+...    ..+
T Consensus       502 ~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~-~gI~~e~~----~~~  576 (755)
T 2vyc_A          502 LLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGR-HGIVPTRT----TDF  576 (755)
T ss_dssp             HHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHT-TTCCCSEE----CSS
T ss_pred             hccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHH-CCCEEeec----CCC
Confidence                                    0    023466676753          5677899999976 69876432    345


Q ss_pred             EEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          345 VFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       345 ~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .+|+.+....|++++++++++|+++.+..
T Consensus       577 ~v~~~~~~g~t~~~~~~l~~al~~~~~~~  605 (755)
T 2vyc_A          577 QIMFLFSMGVTRGKWGTLVNTLCSFKRHY  605 (755)
T ss_dssp             EEEEECCTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence            78888887889999999999999887644

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.94  E-value=1e-24  Score=206.73  Aligned_cols=284  Identities=14%  Similarity=0.090  Sum_probs=198.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      .+...++++.+++++|.+  + .++++||++|+..++.+++++||+|+++.+.|++..  +...++..|++++.++..  
T Consensus        58 ~~~~~~l~~~la~~~g~~--~-~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~--  132 (389)
T 3acz_A           58 NPTVEQFEEMVCSIEGAA--G-SAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTS--  132 (389)
T ss_dssp             CHHHHHHHHHHHHHHTCS--E-EEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTT--
T ss_pred             ChHHHHHHHHHHHHhCCC--e-EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCC--
Confidence            466889999999999986  2 667778899999999888999999999999888764  334467789999999863  


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                         |++++++++++    ++++|++++++||+|.+.|+++|.++|++  +|+++|+|++++.+...... ..++|+++.|
T Consensus       133 ---d~~~l~~~i~~----~~~~v~~~~~~nptG~~~~l~~i~~~~~~--~~~~livD~~~~~~~~~~~~-~~~~di~~~S  202 (389)
T 3acz_A          133 ---DVEKVKAAWKP----NTKMVYLESPANPTCKVSDIKGIAVVCHE--RGARLVVDATFTSPCFLKPL-ELGADIALHS  202 (389)
T ss_dssp             ---CHHHHHHTCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHH--HTCEEEEECTTTCTTTCCGG-GTTCSEEEEE
T ss_pred             ---CHHHHHHhcCC----CCeEEEEECCCCCCCeecCHHHHHHHHHH--cCCEEEEECCCccccccCcc-ccCCeEEEEC
Confidence               89999998874    56999999999999999999999999999  99999999999866531112 2579999999


Q ss_pred             CCCcccCCCc--ceEEEecH-HHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHH
Q 015729          199 SQKALSLPTG--MGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI  275 (401)
Q Consensus       199 ~~K~l~g~~g--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  275 (401)
                      .+|+++++.+  .|++++++ ++.+++....            ..  .|    .+.+....+....+++     .+....
T Consensus       203 ~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~------------~~--~g----~~~~~~~~~~~~~~l~-----~l~~r~  259 (389)
T 3acz_A          203 VSKYINGHGDVIGGVSSAKTAEDIATIKFYR------------KD--AG----SLMAPMDAFLCARGMK-----TLPIRM  259 (389)
T ss_dssp             TTTTTTCSSCCCCEEEEESSHHHHHHHHHHH------------HH--HC----CCCCHHHHHHHHHHHT-----THHHHH
T ss_pred             ChhhccCCCCceeEEEEECcHHHHHHHHHHH------------Hh--cC----CCCCHHHHHHHHcCcc-----HHHHHH
Confidence            9999976655  49999998 8776654310            00  12    2344433333333333     234456


Q ss_pred             HHHHHHHHHHHHHHHHcC-C--------------ccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEcc---C
Q 015729          276 ERHRRLGKATRLAVEAWG-L--------------KNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGL---G  337 (401)
Q Consensus       276 ~~~~~~~~~l~~~L~~~g-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~---g  337 (401)
                      ++..++.+.+.+.|++.+ +              .+..+... ..+.++.|.++ +  ..++.+.|. +.++.++.   |
T Consensus       260 ~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~-g~g~~~~~~l~-~--~~~~~~~l~-~~~i~~~~~s~G  334 (389)
T 3acz_A          260 QIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMT-GYGSTFLFEMK-S--FEAAKKLME-HLKVCTLAVSLG  334 (389)
T ss_dssp             HHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCS-SCCSEEEEEES-S--HHHHHHHHT-TCSSSEEBSCCC
T ss_pred             HHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC-CCCeEEEEEEC-C--HHHHHHHHH-hCCCcEECcCCC
Confidence            667778888888887742 1              11100001 12457778884 3  455555554 44776655   3


Q ss_pred             ------CCC-----------------CCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          338 ------LNK-----------------VAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       338 ------~~~-----------------~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                            ..+                 ...+.+|+++...    +.+.+++.+.++++
T Consensus       335 ~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~----~~~~li~~l~~al~  387 (389)
T 3acz_A          335 CVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE----NVDDIIADLKQALE  387 (389)
T ss_dssp             CSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS----CHHHHHHHHHHHHT
T ss_pred             CcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC----CHHHHHHHHHHHHh
Confidence                  111                 1246899987653    55666666666654

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.94  E-value=5e-25  Score=212.99  Aligned_cols=322  Identities=12%  Similarity=0.074  Sum_probs=210.8

Q ss_pred             hHHHHHHHccCcCC--CCC--ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC--CCCCeEEEEcCCc
Q 015729           21 PDQVIRAMNRNNED--YRS--PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--SPGDRIISFLIGQ   94 (401)
Q Consensus        21 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~--~~gd~vl~~~~~~   94 (401)
                      ++++++++.+....  +..  ....+...++.++++++++.+..+++++++||++|++.++....  ..+++|++..++|
T Consensus        79 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~y  158 (451)
T 3oks_A           79 APKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAY  158 (451)
T ss_dssp             CHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCC
T ss_pred             CHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCc
Confidence            56666666654322  221  23446677899999999876544569999999999999986544  3458899999988


Q ss_pred             chHHHHHHHHHc------------CCcEEEEeCCCCC-----CC--------ChHHHHHHHhcc-CCCCceEEEEEecCC
Q 015729           95 FSLLWIDQQQRL------------NFNVDVVESDWGE-----GA--------KLDVLASKLAAD-TAHTIKAICIVHNET  148 (401)
Q Consensus        95 ~~~~~~~~~~~~------------g~~~~~v~~~~~~-----~~--------d~~~le~~~~~~-~~~~~~~i~~~~~~n  148 (401)
                      |+..........            ...+..++.+...     ..        +++.+++.+++. ..+++++|++..+++
T Consensus       159 hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~  238 (451)
T 3oks_A          159 HGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQG  238 (451)
T ss_dssp             CCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBT
T ss_pred             CCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcC
Confidence            877633222111            1145666654211     01        244444555421 113467777777677


Q ss_pred             Ccccccc----hHHHHHHhhhcCCCcEEEEecccccCcc-----eeccCcccceEEEecCCCcccCCCcceEEEecHHHH
Q 015729          149 ATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKAL  219 (401)
Q Consensus       149 ~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~  219 (401)
                      +.|.+.+    +++|.++|++  +|+++|+|++|.....     ..+.....+|++++|  |+++++.++|+++++++++
T Consensus       239 ~gG~~~~~~~~l~~l~~l~~~--~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~s--K~l~~G~~iG~v~~~~~~~  314 (451)
T 3oks_A          239 EGGFIVPADGFLPTLLDWCRK--NDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTA--KGIAGGLPLSAVTGRAEIM  314 (451)
T ss_dssp             TTTCBCCCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSCEEEEEEHHHH
T ss_pred             CCCccCCCHHHHHHHHHHHHH--cCCEEEEEecccCCCccccchhhhhcCCCCCeeeeh--hhhhCCcceEEEEECHHHH
Confidence            7777766    8999999999  9999999999873211     112222346777554  9997767789999999988


Q ss_pred             HHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccc
Q 015729          220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNC  297 (401)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~  297 (401)
                      +.+.....                +  ..++.++..+++..++++.+.++   ...++.+++.+++++.|+++  .+...
T Consensus       315 ~~~~~~~~----------------~--~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~  373 (451)
T 3oks_A          315 DSPHVSGL----------------G--GTYGGNPIACAAALATIETIESE---GLVARAQQIEKIMKDRLGRLQAEDDRI  373 (451)
T ss_dssp             TCSCTTSB----------------C--CSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred             hhhcCCCc----------------C--CCCCCCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence            77654211                1  13456677777788888877654   35666666777777777654  22222


Q ss_pred             cCCCccCCceeEEEEcC-------CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          298 TQKEEWFSDTVTAVIVP-------SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       298 ~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      ....  ..+.++++.+.       +..+..++.+.|.++ ||.+.++..  .++++||++...++++++++++++|++++
T Consensus       374 ~~~~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~~~~~~t~e~i~~~l~~l~~~l  448 (451)
T 3oks_A          374 GDVR--GRGAMIAMELVKAGTTEPDADLTKALCAGAHAA-GVIVLSCGT--YGNVVRFLPPLSIGDDLLNEGLDVLEEVL  448 (451)
T ss_dssp             EEEE--EETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHT-TEECEEECT--TSCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             EEEE--EeeEEEEEEEecCccCCCCHHHHHHHHHHHHhC-CcEEecCCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            1111  22446777662       212355788888876 999887643  25789998888889999999999999988


Q ss_pred             Hh
Q 015729          371 KD  372 (401)
Q Consensus       371 ~~  372 (401)
                      ++
T Consensus       449 ~~  450 (451)
T 3oks_A          449 RG  450 (451)
T ss_dssp             HC
T ss_pred             hh
Confidence            64

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.94  E-value=6.2e-25  Score=212.35  Aligned_cols=320  Identities=13%  Similarity=0.074  Sum_probs=208.7

Q ss_pred             hHHHHHHHccCcC--CCC--CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC--CCCCeEEEEcCCc
Q 015729           21 PDQVIRAMNRNNE--DYR--SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--SPGDRIISFLIGQ   94 (401)
Q Consensus        21 ~~~v~~a~~~~~~--~~~--~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~--~~gd~vl~~~~~~   94 (401)
                      ++.|++++.+...  .+.  .....+...++.++++++++.+..+++++++||++|++.++....  ..+++|++.+++|
T Consensus        82 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~y  161 (453)
T 4ffc_A           82 HPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAY  161 (453)
T ss_dssp             CHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCC
T ss_pred             CHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCcc
Confidence            5666666655321  122  123456677999999999876544569999999999999986543  3568999999998


Q ss_pred             chHHHHHHHHHc------------CCcEEEEeCCCCC----CCC--------hHHHHHHHhccCCCCceEEEEEecCCCc
Q 015729           95 FSLLWIDQQQRL------------NFNVDVVESDWGE----GAK--------LDVLASKLAADTAHTIKAICIVHNETAT  150 (401)
Q Consensus        95 ~~~~~~~~~~~~------------g~~~~~v~~~~~~----~~d--------~~~le~~~~~~~~~~~~~i~~~~~~n~t  150 (401)
                      |+..........            ...+..++.+...    ..+        .+++++.+..   +.+++|+++..++..
T Consensus       162 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~---~~~aavi~ep~~~~g  238 (453)
T 4ffc_A          162 HGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGA---QSLAAIIIEPIQGEG  238 (453)
T ss_dssp             CCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCG---GGEEEEEECSSBTTT
T ss_pred             CCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCC---CCEEEEEEcCCCCCC
Confidence            877632222111            1145666654211    122        2445554432   245666666655666


Q ss_pred             ccccc----hHHHHHHhhhcCCCcEEEEecccccCcc---e--eccCcccceEEEecCCCcccCCCcceEEEecHHHHHH
Q 015729          151 GVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEA  221 (401)
Q Consensus       151 G~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~--~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~  221 (401)
                      |.+.+    +++|.++|++  +|+++|+|++|.....   .  .+.....+|++++|  |+++++.++|++++++++++.
T Consensus       239 G~~~~~~~~l~~l~~l~~~--~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~s--K~~~~G~~~G~~~~~~~i~~~  314 (453)
T 4ffc_A          239 GFIVPAPGFLATLTAWASE--NGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMA--KGIAGGMPLSAVTGRAELMDA  314 (453)
T ss_dssp             TSBCCCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGGGTTSSCEEEEEEHHHHTT
T ss_pred             CcccCCHHHHHHHHHHHHH--cCCEEEEecCccCCCcccccchhhhcCCCcchHhhh--hhhcCCcCeEEEEECHHHHhh
Confidence            67765    8999999999  9999999999873211   1  12122346777665  999776778999999998877


Q ss_pred             hccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccC
Q 015729          222 SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQ  299 (401)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~  299 (401)
                      +.....                +  .+++.++..+++..++++.+.+++   ..++.+++.+++++.|+++  .+.....
T Consensus       315 ~~~~~~----------------~--~t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~  373 (453)
T 4ffc_A          315 VYAGGL----------------G--GTYGGNPVTCAAAVAALGVMRELD---LPARARAIEASVTSRLSALAEEVDIIGE  373 (453)
T ss_dssp             SCTTSS----------------C--CSSSSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCSSEEE
T ss_pred             hcccCc----------------C--CCCCcCHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence            654311                1  134466777777888888776543   5556666666677666653  2222211


Q ss_pred             CCccCCceeEEEEcCC-------CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          300 KEEWFSDTVTAVIVPS-------HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       300 ~~~~~~~~~~~~~~~~-------~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      ..  ..+.++++.+.+       .....++.+.|+++ ||.+.++..  .++.+||++...++++|+++++++|++++++
T Consensus       374 ~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  448 (453)
T 4ffc_A          374 VR--GRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQ-GVLILTCGT--FGNVIRLLPPLVIGDDLLDEGITALSDIIRA  448 (453)
T ss_dssp             EE--EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHT-TEECCEECT--TSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EE--eeceEEEEEEecCcccCCCHHHHHHHHHHHHhC-CCEEecCCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            11  224467776622       11255788888876 999987643  2578999888888999999999999999986


Q ss_pred             c
Q 015729          373 V  373 (401)
Q Consensus       373 ~  373 (401)
                      +
T Consensus       449 ~  449 (453)
T 4ffc_A          449 K  449 (453)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.94  E-value=3.7e-25  Score=209.92  Aligned_cols=288  Identities=14%  Similarity=0.052  Sum_probs=199.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDW  117 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~  117 (401)
                      ......++++.+++++|.+.   +++++||++|++.++.+++++||+|+++.++|++..  +....+..|++++.++.+ 
T Consensus        64 ~~~~~~~l~~~la~~~g~~~---~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-  139 (392)
T 3qhx_A           64 GNPTRTALEAALAAVEDAAF---GRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALA-  139 (392)
T ss_dssp             CCHHHHHHHHHHHHHTTCSE---EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTT-
T ss_pred             CChHHHHHHHHHHHHhCCCc---EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCC-
Confidence            34568899999999998863   888999999999999888999999999999988765  334447789999999865 


Q ss_pred             CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEe
Q 015729          118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT  197 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~  197 (401)
                          |++++++++++    ++++|++++++||+|.+.|+++|.++|++  +|+++|+|++++.+.. .+....++|+++.
T Consensus       140 ----d~~~l~~~i~~----~~~~v~~~~~~nptG~~~~l~~i~~la~~--~g~~li~D~~~~~~~~-~~~~~~~~di~~~  208 (392)
T 3qhx_A          140 ----DLDAVRAAIRP----TTRLIWVETPTNPLLSIADIAGIAQLGAD--SSAKVLVDNTFASPAL-QQPLSLGADVVLH  208 (392)
T ss_dssp             ----CHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHH--HTCEEEEECTTTCTTT-CCGGGGTCSEEEE
T ss_pred             ----CHHHHHHhhCC----CCeEEEEECCCCCCcEEecHHHHHHHHHH--cCCEEEEECCCccccc-CChHHhCCcEEEE
Confidence                89999999974    67999999999999999999999999999  9999999999986532 2334568999999


Q ss_pred             cCCCcccCCC--cceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHH
Q 015729          198 GSQKALSLPT--GMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENV  274 (401)
Q Consensus       198 s~~K~l~g~~--g~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~  274 (401)
                      |.||+++++.  ..|+++.+ +++.+.+...             .. ..    ..+.+...++.+...++.     +...
T Consensus       209 S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~-------------~~-~~----g~~~~~~~~~~~~~~l~~-----l~~~  265 (392)
T 3qhx_A          209 STTKYIGGHSDVVGGALVTNDEELDQSFAFL-------------QN-GA----GAVPGPFDAYLTMRGLKT-----LVLR  265 (392)
T ss_dssp             ETTTTTTCSSCCCCEEEEESCHHHHHHHHHH-------------HH-HH----CCCCCHHHHHHHHHHHTT-----HHHH
T ss_pred             cCccccCCCCCceEEEEEECcHHHHHHHHHH-------------HH-hc----CCCCCHHHHHHHHhhhhH-----HHHH
Confidence            9999996543  26999987 4665554321             00 01    123455433333333332     4456


Q ss_pred             HHHHHHHHHHHHHHHHHc-CCccc-cCC----Cc--------cCCceeEEEEcCCC-CCHHHHHHHHHhhCCeEEccCCC
Q 015729          275 IERHRRLGKATRLAVEAW-GLKNC-TQK----EE--------WFSDTVTAVIVPSH-INSSEIVRRAWQRYNLSLGLGLN  339 (401)
Q Consensus       275 ~~~~~~~~~~l~~~L~~~-g~~~~-~~~----~~--------~~~~~~~~~~~~~~-~~~~~l~~~L~~~~~i~v~~g~~  339 (401)
                      .++..++++.+.+.|++. ++... .+.    +.        ...+.+++|.++.+ .....+...|. ..++.+..|..
T Consensus       266 ~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~-~~~~~~s~G~~  344 (392)
T 3qhx_A          266 MQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTN-IFILAESLGSV  344 (392)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCS-SSEECSCCCCS
T ss_pred             HHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCC-CceECCCCCCC
Confidence            677788888888888875 33211 110    00        12356888998542 23445555553 33555554432


Q ss_pred             ------C--------------CCCcEEEEeecccCCHHHHHHHHHHH
Q 015729          340 ------K--------------VAGKVFRIGHLGHLNELQLLGCLAGV  366 (401)
Q Consensus       340 ------~--------------~~~~~~Ri~~~~~~~~~di~~~~~~i  366 (401)
                            +              ..++.+|||+....++++++.+.++|
T Consensus       345 ~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al  391 (392)
T 3qhx_A          345 ESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL  391 (392)
T ss_dssp             SCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred             CceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence                  0              23567999876644455555554443

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.94  E-value=8.3e-26  Score=222.56  Aligned_cols=316  Identities=15%  Similarity=0.051  Sum_probs=190.9

Q ss_pred             CceEEecCChhHHHHHHHhc-----cCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhc
Q 015729           60 GTPFLIPTTGTGAWESALTN-----TLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAA  132 (401)
Q Consensus        60 ~~~i~~~~g~t~a~~~~~~~-----~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~  132 (401)
                      ++++++++|+++|+..++.+     ++++||+|++++|+|+++.........|++++.++.+++  +.+|++++++.++ 
T Consensus       165 ~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~-  243 (546)
T 2zy4_A          165 SVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD-  243 (546)
T ss_dssp             GEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS-
T ss_pred             cceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC-
Confidence            46699999999999998866     578999999999988776532223345788999988654  3589999988764 


Q ss_pred             cCCCCceEEEEEecCCCcccccch---HHHHHHh--hhcCCCcEEEEecccccCcce-eccC--cccceEEEecCCCccc
Q 015729          133 DTAHTIKAICIVHNETATGVTNNL---SKVRKLL--DEYRHPALFLVDGVSSICAID-FRMD--EWGIDVALTGSQKALS  204 (401)
Q Consensus       133 ~~~~~~~~i~~~~~~n~tG~~~~l---~~i~~l~--~~~~~~~~li~D~a~~~~~~~-~~~~--~~~~di~~~s~~K~l~  204 (401)
                         .+++++++++|+||||.+++.   ++|.++|  ++  +|++||+|++|+..... ..+.  ..+.++++.|.+|+++
T Consensus       244 ---~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~--~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g  318 (546)
T 2zy4_A          244 ---PAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHR--PDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFG  318 (546)
T ss_dssp             ---TTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTC--TTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTT
T ss_pred             ---CCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhcc--CCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccC
Confidence               467999999999999999974   5577888  56  99999999999854321 1111  1246899999999884


Q ss_pred             CCCc--ceEEEecHH-HHHHhccCCC----------------CccccchHHHH-HHhh-cCCCCCCCCcHHHHHH-HHHH
Q 015729          205 LPTG--MGIVCASPK-ALEASKTAKS----------------VRVFFDWKDYI-KFYN-LGTFWPYTPSIQLLYG-LRAA  262 (401)
Q Consensus       205 g~~g--~G~l~~~~~-~~~~~~~~~~----------------~~~~~~~~~~~-~~~~-~g~~~~~~~~~~~~~a-~~~a  262 (401)
                       .+|  +|+++++++ +.+.+.....                ......+.+.+ .... ...+...+.+.....+ ...+
T Consensus       319 -~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a  397 (546)
T 2zy4_A          319 -ATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFS  397 (546)
T ss_dssp             -CGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHH
T ss_pred             -CCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHH
Confidence             444  699998875 6665532110                00000000000 0000 0000011233322222 1112


Q ss_pred             H-HHHHH--hcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC----------------CCCHHH-H
Q 015729          263 L-DLIFE--EGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS----------------HINSSE-I  322 (401)
Q Consensus       263 l-~~~~~--~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~-l  322 (401)
                      + .++.+  ...+..++.++++.+.+.+.|. .++.+..+    ..+.++++.++.                +.+..+ +
T Consensus       398 ~~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l  472 (546)
T 2zy4_A          398 LFALMDEADEYKHTLKQLIRRRETTLYRELG-MPPLRDEN----AVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDML  472 (546)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTT----BCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHhcC-CCcccCCC----CeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHH
Confidence            2 22221  1145566667777776666664 33332221    345677887642                112333 4


Q ss_pred             HHHHHhhCCeEEccCCCCC-CCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCCCCCcch---HHHHHHHH
Q 015729          323 VRRAWQRYNLSLGLGLNKV-AGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGS---GVAAASAY  389 (401)
Q Consensus       323 ~~~L~~~~~i~v~~g~~~~-~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~~~~~~~---~~~~~~~~  389 (401)
                      .+.|.+ .||.+.+|.... .++++||++. ..+++++++++++|+++++++..+++..+   ++.++++|
T Consensus       473 ~~ll~~-~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (546)
T 2zy4_A          473 FRIADE-TGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMADELYAEYSGQAQNLKLAAALEH  541 (546)
T ss_dssp             HHHHHH-HSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred             HHHHHH-CCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhh
Confidence            444544 499999985432 3467999875 46899999999999999887653333222   35555544

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.94  E-value=1.5e-24  Score=206.41  Aligned_cols=286  Identities=14%  Similarity=0.093  Sum_probs=195.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCC
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGE  119 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  119 (401)
                      ....++++.+++++|.+  + .+++++|++|+..++. ++++||+|+++.+.|++..  +...++..|++++.++.+   
T Consensus        67 p~~~~l~~~la~~~g~~--~-~i~~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~---  139 (403)
T 3cog_A           67 PTRNCLEKAVAALDGAK--Y-CLAFASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCS---  139 (403)
T ss_dssp             HHHHHHHHHHHHHHTCS--E-EEEESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT---
T ss_pred             chHHHHHHHHHHHhCCC--c-EEEECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC---
Confidence            55779999999999986  3 3445556799999988 8999999999999888754  333456789999999875   


Q ss_pred             CCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCC-cEEEEecccccCcceeccCcccceEEEec
Q 015729          120 GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP-ALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       120 ~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~-~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                        |++++++++++    ++++|++++++||+|.+.|+++|.++|++  +| +++|+|++|+.+...... ..++|+++.|
T Consensus       140 --d~~~l~~~i~~----~t~~v~~~~p~nptG~~~~l~~i~~la~~--~g~~~livD~~~~~~~~~~~~-~~~~div~~S  210 (403)
T 3cog_A          140 --KIKLLEAAITP----ETKLVWIETPTNPTQKVIDIEGCAHIVHK--HGDIILVVDNTFMSPYFQRPL-ALGADISMYS  210 (403)
T ss_dssp             --SHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHTS--SSCCEEEEECTTTCTTTCCTT-TTTCSEEEEE
T ss_pred             --CHHHHHHhcCc----CCeEEEEECCCCCCCeeeCHHHHHHHHHH--cCCCEEEEECCCcccccCCcc-ccCCeEEEEc
Confidence              79999998873    67999999999999999999999999999  99 999999999877532222 2579999999


Q ss_pred             CCCcccCCCc--ceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHH
Q 015729          199 SQKALSLPTG--MGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI  275 (401)
Q Consensus       199 ~~K~l~g~~g--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  275 (401)
                      .+|+++++.+  +|+++++ +++.+++....            ..      +..+.+...++++..+++.     +....
T Consensus       211 ~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~------------~~------~g~~~~~~~~~~~~~~l~~-----l~~r~  267 (403)
T 3cog_A          211 ATKYMNGHSDVVMGLVSVNCESLHNRLRFLQ------------NS------LGAVPSPIDCYLCNRGLKT-----LHVRM  267 (403)
T ss_dssp             TTTTTTCSSCCCCEEEEECCHHHHHHHHHHH------------HH------HCCCCCHHHHHHHHHHHTT-----HHHHH
T ss_pred             ChhhccCCCCCeEEEEEECcHHHHHHHHHHH------------Hh------cCCCCCHHHHHHHHhhhhH-----HHHHH
Confidence            9999987665  4999985 67766554210            00      1123455444444444432     33455


Q ss_pred             HHHHHHHHHHHHHHHHc---------------CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEcc---C
Q 015729          276 ERHRRLGKATRLAVEAW---------------GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGL---G  337 (401)
Q Consensus       276 ~~~~~~~~~l~~~L~~~---------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~---g  337 (401)
                      ++..++.+.+.+.|++.               ++++..++.. ..+.++.|.++.+  ..++.+.|. +.+|.+..   |
T Consensus       268 ~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~-~~g~~~~~~l~~~--~~~~~~~l~-~~~i~~~~~s~G  343 (403)
T 3cog_A          268 EKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT-GCTGMVTFYIKGT--LQHAEIFLK-NLKLFTLAESLG  343 (403)
T ss_dssp             HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS-CCCSEEEEEESSC--HHHHHHHHH-HCSSSEECSCCS
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCC-CCceEEEEEecCC--HHHHHHHHH-hCCcceEccCCC
Confidence            55666666677766553               1222111111 2345777777432  345555554 44764332   2


Q ss_pred             C------------C-----------CCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          338 L------------N-----------KVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       338 ~------------~-----------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      .            +           ...++.+||++....++++++.+.++|++++
T Consensus       344 ~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~  399 (403)
T 3cog_A          344 GFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAH  399 (403)
T ss_dssp             SSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred             CcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence            1            0           0125689999887666777777777766543

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.94  E-value=8e-25  Score=212.35  Aligned_cols=320  Identities=12%  Similarity=0.074  Sum_probs=217.1

Q ss_pred             hHHHHHHHccCcC----CCC-CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCC--------CCCeE
Q 015729           21 PDQVIRAMNRNNE----DYR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS--------PGDRI   87 (401)
Q Consensus        21 ~~~v~~a~~~~~~----~~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~--------~gd~v   87 (401)
                      +|+|++++.+...    .+. .....+...++.++++++++.+. +.+++++||++|++.++.....        ++++|
T Consensus        73 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~-~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~i  151 (472)
T 3hmu_A           73 RDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDL-NHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVI  151 (472)
T ss_dssp             CHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSCTTE-EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred             CHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCC-CEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence            4556666555321    111 12234667789999999986543 3599999999999999876543        46889


Q ss_pred             EEEcCCcchHHHHHHHHHcCC-----------cEEEEeCCCCCC----CC--------hHHHHHHHhccCCCCceEEEEE
Q 015729           88 ISFLIGQFSLLWIDQQQRLNF-----------NVDVVESDWGEG----AK--------LDVLASKLAADTAHTIKAICIV  144 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~~~~----~d--------~~~le~~~~~~~~~~~~~i~~~  144 (401)
                      ++.+++|++........ .+.           .+..++.+...+    .|        +++|++.+++...+++++|+++
T Consensus       152 i~~~~~yHg~t~~~~~~-~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~e  230 (472)
T 3hmu_A          152 ISRKNAYHGSTVASSAL-GGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAE  230 (472)
T ss_dssp             EEETTCCCCSSHHHHHH-SCCHHHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEEC
T ss_pred             EEEcCcCCCccHHhhhc-cCChhhccccCCCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEc
Confidence            99999888765322211 111           345555433100    23        7888888864221357888888


Q ss_pred             ecCCCcccccc----hHHHHHHhhhcCCCcEEEEecccccC-cc--ee--ccCcccceEEEecCCCcccCC-CcceEEEe
Q 015729          145 HNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSIC-AI--DF--RMDEWGIDVALTGSQKALSLP-TGMGIVCA  214 (401)
Q Consensus       145 ~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~-~~--~~--~~~~~~~di~~~s~~K~l~g~-~g~G~l~~  214 (401)
                      .+++++|.+.+    +++|.++|++  +|+++|+|++|... ..  .+  +.....+|++++|  |+++++ .++|++++
T Consensus       231 pv~~~gG~~~~~~~~l~~l~~l~~~--~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~s--K~l~gg~~plG~v~~  306 (472)
T 3hmu_A          231 PVQGAGGVIVAPDSYWPEIQRICDK--YDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIA--KGLSSGYAPIGGSIV  306 (472)
T ss_dssp             SSBSTTTCBCCCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEEC--GGGTTTSSCCEEEEE
T ss_pred             CccCCCCcccCCHHHHHHHHHHHHH--cCCEEEEEccccCCcccCccchhHHhCCCCceeeec--hhhhcCCcceEEEEE
Confidence            88899999887    8999999999  99999999999732 11  11  1122347888776  998765 57899999


Q ss_pred             cHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHH-HHHHHHHHHHHHc-
Q 015729          215 SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHR-RLGKATRLAVEAW-  292 (401)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~-~~~~~l~~~L~~~-  292 (401)
                      ++++++.+....              +..+  .+++.++..+++..++++.+.++   ...++.. ++.+++++.|+++ 
T Consensus       307 ~~~i~~~~~~~~--------------~~~~--~t~~~np~a~aAa~aaL~~~~~~---~~~~~~~~~~~~~l~~~L~~l~  367 (472)
T 3hmu_A          307 CDEVAHVIGKDE--------------FNHG--YTYSGHPVAAAVALENLRILEEE---NILDHVRNVAAPYLKEKWEALT  367 (472)
T ss_dssp             EHHHHHHHTTSC--------------BCCC--CTTTTCHHHHHHHHHHHHHHHHT---THHHHHHHTHHHHHHHHHHGGG
T ss_pred             CHHHHHhcccCC--------------cccc--CCCCCCHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHh
Confidence            999988773210              0011  13456677778888888877654   3667777 8888888888775 


Q ss_pred             CCccccCCCccCCceeEEEEcCCCC------------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHH
Q 015729          293 GLKNCTQKEEWFSDTVTAVIVPSHI------------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL  360 (401)
Q Consensus       293 g~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~  360 (401)
                      .++......  ..+.++.+.+....            ...++++.|+++ ||.++++     ++++||++....|++|++
T Consensus       368 ~~~~v~~vr--~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~-----g~~iRi~p~~~~t~e~i~  439 (472)
T 3hmu_A          368 DHPLVGEAK--IVGMMASIALTPNKASRAKFASEPGTIGYICRERCFAN-NLIMRHV-----GDRMIISPPLVITPAEID  439 (472)
T ss_dssp             GSTTEEEEE--EETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHT-TBCCEEE-----TTEEEECCCTTCCHHHHH
T ss_pred             cCCCeEEEE--ecCceEEEEEecCccccccccchhHHHHHHHHHHHHHC-CcEEEec-----CCEEEEECCCCCCHHHHH
Confidence            333222111  23446667764211            045788888876 9988765     379999988788999999


Q ss_pred             HHHHHHHHHHHhc
Q 015729          361 GCLAGVEMILKDV  373 (401)
Q Consensus       361 ~~~~~i~~~l~~~  373 (401)
                      +++++|+++++++
T Consensus       440 ~~l~~l~~~l~~~  452 (472)
T 3hmu_A          440 EMFVRIRKSLDEA  452 (472)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998754

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.94  E-value=8.7e-25  Score=212.41  Aligned_cols=324  Identities=15%  Similarity=0.139  Sum_probs=218.6

Q ss_pred             hHHHHHHHccCcCC--C-CC-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC--------CCCCeEE
Q 015729           21 PDQVIRAMNRNNED--Y-RS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--------SPGDRII   88 (401)
Q Consensus        21 ~~~v~~a~~~~~~~--~-~~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~--------~~gd~vl   88 (401)
                      +|.|++++.+....  + .. ....+...++.+.++++++...+ .+++++||++|++.++....        ..+++|+
T Consensus        72 ~p~v~~A~~~~l~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi  150 (476)
T 3i5t_A           72 RREIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATLTPGDLN-RIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRII  150 (476)
T ss_dssp             CHHHHHHHHHHHHHCCCCCTTTCBCHHHHHHHHHHHTTSSTTCC-EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred             CHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHhcCCCCcC-EEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            56666666653321  1 11 23456777899999998865443 59999999999999987654        3467899


Q ss_pred             EEcCCcchHHHHHHHHHcC------------CcEEEEeCCCC--C-CCC--------hHHHHHHHhccCCCCceEEEEEe
Q 015729           89 SFLIGQFSLLWIDQQQRLN------------FNVDVVESDWG--E-GAK--------LDVLASKLAADTAHTIKAICIVH  145 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~--~-~~d--------~~~le~~~~~~~~~~~~~i~~~~  145 (401)
                      +.+++|++....... ..+            ..+..++.+..  . ..|        +++||+++++...+++++|+++.
T Consensus       151 ~~~~~yHg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep  229 (476)
T 3i5t_A          151 VRYDGYHGSTALTAA-CTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEP  229 (476)
T ss_dssp             EETTCCCCSSHHHHH-TCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECS
T ss_pred             EEcCCcCcCChhhcc-ccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            999998887632221 111            12344443321  1 112        78899988742213578999999


Q ss_pred             cCCCcccccc----hHHHHHHhhhcCCCcEEEEecccccC-cc--ee--c-cCcccceEEEecCCCcccCC-CcceEEEe
Q 015729          146 NETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSIC-AI--DF--R-MDEWGIDVALTGSQKALSLP-TGMGIVCA  214 (401)
Q Consensus       146 ~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~-~~--~~--~-~~~~~~di~~~s~~K~l~g~-~g~G~l~~  214 (401)
                      +++++|.+.+    +++|.++|++  +|+++|+|++|+.. ..  .+  . .....+|++++|  |+++++ .++|++++
T Consensus       230 ~~~~~G~~~~~~~~L~~l~~lc~~--~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~~G~~plg~v~~  305 (476)
T 3i5t_A          230 ILASGGVIIPPAGYHARFKAICEK--HDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFA--KGVTSGYVPLGGLAI  305 (476)
T ss_dssp             SBTTTTSBCCCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEEC--GGGGTTSSCCEEEEE
T ss_pred             ccCCCCcccCCHHHHHHHHHHHHH--cCCEEEEEecccCCccccCceeeecccCCCcchhhhh--hhhcCCCcCeEEEEE
Confidence            8999998665    8999999999  99999999998732 11  11  2 223357888766  999876 67899999


Q ss_pred             cHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-C
Q 015729          215 SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-G  293 (401)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g  293 (401)
                      ++++.+.+........         .+..+  .+++.++..+++..++++.+.++   ...++.+++.+++++.|+++ .
T Consensus       306 ~~~i~~~~~~~~~~~~---------~~~~~--~t~~~np~a~aAa~aaL~~~~~~---~~~~~~~~~~~~l~~~L~~l~~  371 (476)
T 3i5t_A          306 SEAVLARISGENAKGS---------WFTNG--YTYSNQPVACAAALANIELMERE---GIVDQAREMADYFAAALASLRD  371 (476)
T ss_dssp             CHHHHHTTSGGGCTTC---------EECCC--CTTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHTTTT
T ss_pred             CHHHHHHHhcCCcccc---------ccccc--CCCCcCHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHhc
Confidence            9999887764210000         00111  13456777788888888887664   46778888889999999875 3


Q ss_pred             CccccCCCccCCceeEEEEcCCCC-----------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHH
Q 015729          294 LKNCTQKEEWFSDTVTAVIVPSHI-----------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGC  362 (401)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~  362 (401)
                      .+......  ..+.++.+.+.+..           ...++++.|+++ ||.+.+.     ++++||++...++++|++++
T Consensus       372 ~~~v~~v~--~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~-----g~~iRi~p~l~~t~e~i~~~  443 (476)
T 3i5t_A          372 LPGVAETR--SVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFEL-GLIVRPL-----GDLCVISPPLIISRAQIDEM  443 (476)
T ss_dssp             STTEEEEE--EETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHT-TEECEEE-----TTEEEECCCTTCCHHHHHHH
T ss_pred             CCCeEEEE--ecCceeEEEEecCccccccccchhHHHHHHHHHHHHC-CCEEEec-----CCEEEEECCCCCCHHHHHHH
Confidence            33222111  23446667764321           145788888877 9998763     37999988778899999999


Q ss_pred             HHHHHHHHHh
Q 015729          363 LAGVEMILKD  372 (401)
Q Consensus       363 ~~~i~~~l~~  372 (401)
                      +++|++++++
T Consensus       444 l~~l~~~l~~  453 (476)
T 3i5t_A          444 VAIMRQAITE  453 (476)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988754

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.94  E-value=7.4e-25  Score=212.35  Aligned_cols=322  Identities=14%  Similarity=0.104  Sum_probs=213.0

Q ss_pred             hHHHHHHHccCcC----CCC-CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCC--------CCCeE
Q 015729           21 PDQVIRAMNRNNE----DYR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS--------PGDRI   87 (401)
Q Consensus        21 ~~~v~~a~~~~~~----~~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~--------~gd~v   87 (401)
                      +|.+++++.+...    .+. .....+...++.+.++++++.+.+ .+++++||++|++.++..+.+        ++++|
T Consensus        68 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~v  146 (459)
T 4a6r_A           68 RKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGFD-RVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTL  146 (459)
T ss_dssp             CHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTCC-EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred             CHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCC-EEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence            4556665555321    111 123346678899999999876544 599999999999999877653        57899


Q ss_pred             EEEcCCcchHHHHHHHHH-----------cCCcEEEEeCCC----CCCCC--------hHHHHHHHhccCCCCceEEEEE
Q 015729           88 ISFLIGQFSLLWIDQQQR-----------LNFNVDVVESDW----GEGAK--------LDVLASKLAADTAHTIKAICIV  144 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~~-----------~g~~~~~v~~~~----~~~~d--------~~~le~~~~~~~~~~~~~i~~~  144 (401)
                      ++.+++||+.........           ....+..++.+.    +..+|        +++|++++++...+++++|+++
T Consensus       147 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~e  226 (459)
T 4a6r_A          147 IGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGE  226 (459)
T ss_dssp             EEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEEC
T ss_pred             EEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEEC
Confidence            999999887663222211           011344555332    10034        7889998874221356788888


Q ss_pred             ecCCCcccccc----hHHHHHHhhhcCCCcEEEEecccccC-cc--e--eccCcccceEEEecCCCcccCC-CcceEEEe
Q 015729          145 HNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSIC-AI--D--FRMDEWGIDVALTGSQKALSLP-TGMGIVCA  214 (401)
Q Consensus       145 ~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~-~~--~--~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~  214 (401)
                      .+++++|.+.+    +++|.++|++  +|+++|+|++|... ..  .  .+.....+|++++|  |+++++ .++|++++
T Consensus       227 p~~~~~G~~~~~~~~l~~l~~l~~~--~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~s--K~l~gg~~~lg~v~~  302 (459)
T 4a6r_A          227 PIQGAGGVIVPPATYWPEIERICRK--YDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAA--KGLSSGYLPIGAVFV  302 (459)
T ss_dssp             SSBTTTTCBCCCTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEEC--GGGGTTSSCCEEEEE
T ss_pred             CccCCCCcccCCHHHHHHHHHHHHH--cCCEEEEeccccCCCcccccchHhhcCCCCCeeehh--hhhcCCCCCccceee
Confidence            87888888876    8999999999  99999999998732 11  1  12222346788765  988765 57899999


Q ss_pred             cHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHH-HHHHHHHHHH-HHc
Q 015729          215 SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHR-RLGKATRLAV-EAW  292 (401)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~-~~~~~l~~~L-~~~  292 (401)
                      ++++.+.+.....             +..+.  +++.++..+++..++++.+.+++   ..++.+ ++.+++++.| +.+
T Consensus       303 ~~~i~~~~~~~~~-------------~~~~~--t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~~l~~~l  364 (459)
T 4a6r_A          303 GKRVAEGLIAGGD-------------FNHGF--TYSGHPVCAAVAHANVAALRDEG---IVQRVKDDIGPYMQKRWRETF  364 (459)
T ss_dssp             CHHHHHHHHHHCT-------------THHHH--HHCSCHHHHHHHHHHHHHHHHTC---HHHHHHHTHHHHHHHHHHHHH
T ss_pred             CHHHHHHhhcCCC-------------cccCC--CCCCCHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHH
Confidence            9998887652100             00010  22356667777788888776544   455566 6677777777 444


Q ss_pred             -CCccccCCCccCCceeEEEEcCCCCC-----------HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHH
Q 015729          293 -GLKNCTQKEEWFSDTVTAVIVPSHIN-----------SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL  360 (401)
Q Consensus       293 -g~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~  360 (401)
                       .........  ..+.++.+.+.+...           ..++++.|+++ ||.++++     ++++||++....+++|++
T Consensus       365 ~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~-----g~~iRi~~~~~~t~e~i~  436 (459)
T 4a6r_A          365 SRFEHVDDVR--GVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRN-NLIMRAC-----GDHIVSAPPLVMTRAEVD  436 (459)
T ss_dssp             TTCTTEEEEE--EETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHT-TEECEEE-----TTEEEECCCTTCCHHHHH
T ss_pred             hcCCCeEEEE--EEEEEEEEEEecCccccccccchHHHHHHHHHHHHHC-CeEEecC-----CCEEEEECCCCCCHHHHH
Confidence             333222111  233466676643211           56788888877 9998875     379999988788999999


Q ss_pred             HHHHHHHHHHHhc
Q 015729          361 GCLAGVEMILKDV  373 (401)
Q Consensus       361 ~~~~~i~~~l~~~  373 (401)
                      +++++|+++++++
T Consensus       437 ~~l~~l~~~l~~~  449 (459)
T 4a6r_A          437 EMLAVAERCLEEF  449 (459)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.94  E-value=1.6e-24  Score=205.75  Aligned_cols=314  Identities=11%  Similarity=0.027  Sum_probs=209.5

Q ss_pred             cCChHHHHHHHccCc---CCCCCccHHHHHHHHHHHHHHHhcCC-----CCc--eEEecCChhHHHHHHHhccCC--CCC
Q 015729           18 VHIPDQVIRAMNRNN---EDYRSPAVPALTKTLLEDIKKIFKTT-----SGT--PFLIPTTGTGAWESALTNTLS--PGD   85 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~---~~~~~~~~~~~~~~l~~~la~~~g~~-----~~~--~i~~~~g~t~a~~~~~~~~~~--~gd   85 (401)
                      .++++.+.++.. ..   .....|.......++|+.+++++...     .++  .+++|.|+++|+..++..+..  + |
T Consensus        46 ~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d  123 (405)
T 3k7y_A           46 LHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-E  123 (405)
T ss_dssp             BCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-C
T ss_pred             CcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-C
Confidence            456788888854 21   11223444455668888888877321     122  368899999999998877766  8 9


Q ss_pred             eEEEEcCCcchHHHHHHHHHcCCcEEEEeC-CC-CCCCChHHHHHHHhccCCCCceEEEEEec-CCCcccccc---hHHH
Q 015729           86 RIISFLIGQFSLLWIDQQQRLNFNVDVVES-DW-GEGAKLDVLASKLAADTAHTIKAICIVHN-ETATGVTNN---LSKV  159 (401)
Q Consensus        86 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~-~n~tG~~~~---l~~i  159 (401)
                      +|++++|+|+++.  ..++..|++++.+++ ++ ++.+|++++++.+++.+  ++++++++.+ |||||.+++   +++|
T Consensus       124 ~Vlv~~P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~--~~~~i~l~~~~~NPTG~~~s~~~~~~l  199 (405)
T 3k7y_A          124 TLYVTNPPYINHV--NMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIP--NGSSVILQISCYNPCSVNIEEKYFDEI  199 (405)
T ss_dssp             EEEEESSCCHHHH--HHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSC--SSCEEEECCSSCTTTCCCCCHHHHHHH
T ss_pred             EEEEeCCCCHhHH--HHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCC--CCeEEEEeCCCCCCCCCCCCHHHHHHH
Confidence            9999999877654  567889999999997 33 46789999999997521  3578888765 899999997   4567


Q ss_pred             HHHhhhcCCCcEEEEecccccCcce--------e-cc-CcccceEEEecCCCccc-CCCcceEEEe---cHHHHHHhccC
Q 015729          160 RKLLDEYRHPALFLVDGVSSICAID--------F-RM-DEWGIDVALTGSQKALS-LPTGMGIVCA---SPKALEASKTA  225 (401)
Q Consensus       160 ~~l~~~~~~~~~li~D~a~~~~~~~--------~-~~-~~~~~di~~~s~~K~l~-g~~g~G~l~~---~~~~~~~~~~~  225 (401)
                      .++|++  +|++||+|++|......        . .+ ......+++.|.+|+++ .+.++|++++   +++..+++...
T Consensus       200 ~~~~~~--~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~  277 (405)
T 3k7y_A          200 IEIVLH--KKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNN  277 (405)
T ss_dssp             HHHHHH--HCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHH
T ss_pred             HHHHHH--CCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHH
Confidence            888888  99999999998743211        0 01 11234688899999995 3455799753   56654443210


Q ss_pred             CCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHH--HH---HhcHHHHHHHHHHHHHHHHHHHH----HcC---
Q 015729          226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL--IF---EEGLENVIERHRRLGKATRLAVE----AWG---  293 (401)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~--~~---~~g~~~~~~~~~~~~~~l~~~L~----~~g---  293 (401)
                                  ........  ..+++.....++..++..  +.   ...++..+++++++++.+.+.|+    ++|   
T Consensus       278 ------------l~~~~~~~--~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~  343 (405)
T 3k7y_A          278 ------------LCFIVRKF--YSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNY  343 (405)
T ss_dssp             ------------HHHHHHTT--TSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCC
T ss_pred             ------------HHHHHhcc--cCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Confidence                        01110011  123444443344444432  11   11245667778999999999999    776   


Q ss_pred             -CccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          294 -LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       294 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                       +.+..+    ..+.++|+.++.     +++..| +++||.+.++      +  ||++.+ .+++++++++++|+++++.
T Consensus       344 ~~~~~~p----~gg~f~~~~l~~-----~~~~~L-~~~gV~v~p~------~--Ris~a~-~~~~~i~~~~~~i~~~~~~  404 (405)
T 3k7y_A          344 DWNVYKK----QRGLFSFVPLLA-----KIAEHL-KTHHIYIINN------G--RINVSG-ITKNNVDYIADKICLSLSQ  404 (405)
T ss_dssp             CGGGGSS----CCSSEEECGGGG-----GGTTTT-TTTTEECCTT------S--EEEGGG-CCTTHHHHHHHHHHHHHHC
T ss_pred             CCccccC----CceEEEecCCCH-----HHHHHH-HHCCEeecCC------C--eEEEec-cCHHHHHHHHHHHHHHHhh
Confidence             344443    345677766642     334667 6679998864      2  997654 7899999999999999864

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.93  E-value=1.1e-25  Score=213.61  Aligned_cols=282  Identities=12%  Similarity=0.004  Sum_probs=197.8

Q ss_pred             HHHHHHHHHHhcC-----CCCceEEecCChhHHHHHHHhccCCCCC----eEEEEcCCcchHHHHHHHHHcCCcEEEEeC
Q 015729           45 KTLLEDIKKIFKT-----TSGTPFLIPTTGTGAWESALTNTLSPGD----RIISFLIGQFSLLWIDQQQRLNFNVDVVES  115 (401)
Q Consensus        45 ~~l~~~la~~~g~-----~~~~~i~~~~g~t~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~  115 (401)
                      .++|+.++++++.     ++++++++|+|+++|+..++.+++++||    +|++++|+|.++.  ..++..|++++.++.
T Consensus        71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~--~~~~~~g~~~~~~~~  148 (391)
T 3bwn_A           71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYV--EETTYVRSGMYKWEG  148 (391)
T ss_dssp             HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHH--HHHHTTCBTTEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHH--HHHHHcCCeEEEecC
Confidence            7899999998873     2334699999999999999999899999    9999999887654  567788999988887


Q ss_pred             CCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhh-cCCCcEEEEecccccCc-ceeccCcccce
Q 015729          116 DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDE-YRHPALFLVDGVSSICA-IDFRMDEWGID  193 (401)
Q Consensus       116 ~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~-~~~~~~li~D~a~~~~~-~~~~~~~~~~d  193 (401)
                      +.++ ++        .    ++++++++++|+||||.+++  +|   |++ ++++++||+|++|..+. .++.. ..+.+
T Consensus       149 d~~~-l~--------~----~~~k~v~l~~p~NPtG~~~~--~l---~~~~~~~~~~ii~De~y~~~~~~~l~~-~~~~~  209 (391)
T 3bwn_A          149 DAWG-FD--------K----KGPYIELVTSPNNPDGTIRE--TV---VNRPDDDEAKVIHDFAYYWPHYTPITR-RQDHD  209 (391)
T ss_dssp             ESTT-CC--------C----CSCEEEEEESSCTTTCCCCC--CC---C-----CCCEEEEECTTCSTTTSCCCC-CBCCS
T ss_pred             CHHH-cC--------C----CCCEEEEECCCCCCCchhHH--HH---HHHhhcCCCEEEEeCCCCCCCCCcccc-CCCCe
Confidence            6432 22        1    36799999999999999996  44   443 33559999999997532 12221 34578


Q ss_pred             EEEecCCCcccCCCc--ceEEEe-cHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHH---
Q 015729          194 VALTGSQKALSLPTG--MGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF---  267 (401)
Q Consensus       194 i~~~s~~K~l~g~~g--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~---  267 (401)
                      +++.|.||++ +.+|  +|++++ ++++.+.+...             ....     .++++.....++.++++...   
T Consensus       210 i~~~S~SK~~-g~~GlRiG~~~~~~~~l~~~l~~~-------------~~~~-----~~~~~~~~q~a~~~~l~~~~~~~  270 (391)
T 3bwn_A          210 IMLFTFSKIT-GHAGSRIGWALVKDKEVAKKMVEY-------------IIVN-----SIGVSKESQVRTAKILNVLKETC  270 (391)
T ss_dssp             EEEEEHHHHH-SCGGGCEEEEEECCHHHHHHHHHH-------------HHHH-----HSSCCHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEechhhc-CCCccceEEEEecCHHHHHHHHHH-------------hccc-----ccCCCHHHHHHHHHHHhCcchhc
Confidence            9999999988 4555  599997 78877666432             1110     11355555555666665432   


Q ss_pred             ------HhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCcc---------CCceeEEEEcCCCCCHHHHHHHHHhhCC
Q 015729          268 ------EEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEW---------FSDTVTAVIVPSHINSSEIVRRAWQRYN  331 (401)
Q Consensus       268 ------~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~~~  331 (401)
                            +..+++.+++++++++.+.+.|+++ ++.+..+.+..         ..+.++++.+++.   ..+...|. +.|
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~---~~~~~~l~-~~g  346 (391)
T 3bwn_A          271 KSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE---TDLVSELR-RHK  346 (391)
T ss_dssp             TCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS---CCHHHHHH-HTT
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH---HHHHHHHH-HCC
Confidence                  2347788899999999999999987 55554332211         1234678888642   34555554 459


Q ss_pred             eEEccCCCCC-CCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          332 LSLGLGLNKV-AGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       332 i~v~~g~~~~-~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      |.+.+|..+. ..+++||++..  +++++++++++|++++++
T Consensus       347 V~v~pg~~fg~~~~~iRis~~~--~~e~i~~~~~~L~~~~~~  386 (391)
T 3bwn_A          347 VMSRAGERCGSDKKHVRVSMLS--REDVFNVFLERLANMKLI  386 (391)
T ss_dssp             EECEEGGGGTCCTTEEEEESCS--CHHHHHHHHHHHHSCC--
T ss_pred             EEEccCCCCCCCCCEEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence            9999985543 25789998774  899999999999887653

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.93  E-value=1.3e-24  Score=206.13  Aligned_cols=283  Identities=13%  Similarity=0.086  Sum_probs=200.3

Q ss_pred             HHHHHHHccCcCC------CCCccH-HHHHHHHHHHHHHHhcCCCCceEEe--cCChhHHHHHHHhccCCCCCeEEEEc-
Q 015729           22 DQVIRAMNRNNED------YRSPAV-PALTKTLLEDIKKIFKTTSGTPFLI--PTTGTGAWESALTNTLSPGDRIISFL-   91 (401)
Q Consensus        22 ~~v~~a~~~~~~~------~~~~~~-~~~~~~l~~~la~~~g~~~~~~i~~--~~g~t~a~~~~~~~~~~~gd~vl~~~-   91 (401)
                      .+|++++.+....      ..++.+ .....++++.+++++|.+..  +++  ++||++|+..++.+++++||+|+++. 
T Consensus        32 ~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~e~a--lv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~  109 (409)
T 3jzl_A           32 AKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKTEAA--LVRPQIISGTHAISTVLFGILRPDDELLYITG  109 (409)
T ss_dssp             HHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTCSEE--EEETTSCSHHHHHHHHHHHHCCTTCEEEECSS
T ss_pred             HHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCCCcE--EEECCCccHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            4577777764311      111111 23477899999999998652  333  88999999999999999999999998 


Q ss_pred             CCcchHH-HH-------HHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEe----cCCCcccccchHHH
Q 015729           92 IGQFSLL-WI-------DQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVH----NETATGVTNNLSKV  159 (401)
Q Consensus        92 ~~~~~~~-~~-------~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~----~~n~tG~~~~l~~i  159 (401)
                      +.|.+.. ..       ..++..|++++.++.++++.+|++++++++++    ++++|++++    ++||+|.+.|+++|
T Consensus       110 ~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~----~tklV~i~~s~g~p~nptg~v~~l~~I  185 (409)
T 3jzl_A          110 QPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTP----KTKMIGIQRSRGYADRPSFTIEKIKEM  185 (409)
T ss_dssp             SCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCT----TEEEEEEECSCTTSSSCCCCHHHHHHH
T ss_pred             CCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccC----CCeEEEEECCCCCCCCCcCccccHHHH
Confidence            7665543 11       23466799999999988888999999999873    679999999    99999999999999


Q ss_pred             HHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCC--CcceEEEecHHHHHHhccCCCCccccchHHH
Q 015729          160 RKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLP--TGMGIVCASPKALEASKTAKSVRVFFDWKDY  237 (401)
Q Consensus       160 ~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~--~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  237 (401)
                      .++|+++++|+++++|++|+.+....+....++|++++|.||+++++  ...|++++++++++++.........      
T Consensus       186 ~~la~~~~~~~~livD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~------  259 (409)
T 3jzl_A          186 IVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGI------  259 (409)
T ss_dssp             HHHHHHHCTTCEEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTT------
T ss_pred             HHHHHhhCCCCEEEEeCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccc------
Confidence            99999977899999999998765333445568999999999999754  2239999999998877542110000      


Q ss_pred             HHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCC
Q 015729          238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI  317 (401)
Q Consensus       238 ~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~  317 (401)
                        ....+.    +...     +.++++.+..  ....+++..++++++++.|+++|+++.+.....+...++.|.+++..
T Consensus       260 --g~~~g~----~~~~-----~~~~l~gl~~--~~~r~~~~~~~a~~la~~L~~~g~~v~p~~~~~~~~~i~~i~l~~~~  326 (409)
T 3jzl_A          260 --GREAGA----SLYS-----LLEMYQGFFL--APHVTAQAIKGARFTAAMLAEFGVEADPVWDAPRTDLIQSVSFHNKE  326 (409)
T ss_dssp             --GGGCCC----CTTC-----HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCCEEECSCHH
T ss_pred             --cccccc----cHHH-----HHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCccEEEEEEeCCHH
Confidence              001111    1111     1223333322  34578888999999999999998877443222234457778885433


Q ss_pred             CHHHHHHHHHhh
Q 015729          318 NSSEIVRRAWQR  329 (401)
Q Consensus       318 ~~~~l~~~L~~~  329 (401)
                      ...++++.|...
T Consensus       327 ~~~~~~~~L~~~  338 (409)
T 3jzl_A          327 KMVAFAQAIQAA  338 (409)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            455677888654

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.93  E-value=1.4e-24  Score=206.00  Aligned_cols=287  Identities=13%  Similarity=0.079  Sum_probs=197.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      .....++++.+++++|.+  + .+++++|++|++.++. ++++||+|+++.+.|++..  +...++..|++++.++.+  
T Consensus        54 ~~~~~~lr~~la~~~g~~--~-~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~--  127 (393)
T 1n8p_A           54 NPNRENLERAVAALENAQ--Y-GLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDL--  127 (393)
T ss_dssp             CHHHHHHHHHHHHHTTCS--E-EEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSH--
T ss_pred             ChhHHHHHHHHHHHhCCC--c-EEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCC--
Confidence            456889999999999986  2 5666667999999999 8999999999999877654  222456679999999865  


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCC----CcEEEEecccccCcceeccCcccceE
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRH----PALFLVDGVSSICAIDFRMDEWGIDV  194 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~----~~~li~D~a~~~~~~~~~~~~~~~di  194 (401)
                         | +++++++++    ++++|++++++||+|.+.|+++|.++|++  +    |+++|+|++|+.+... +....++|+
T Consensus       128 ---d-~~l~~~i~~----~t~lv~~~~~~nptG~~~~l~~i~~la~~--~~~~~~~~livD~a~~~~~~~-~~~~~~~di  196 (393)
T 1n8p_A          128 ---L-NDLPQLIKE----NTKLVWIETPTNPTLKVTDIQKVADLIKK--HAAGQDVILVVDNTFLSPYIS-NPLNFGADI  196 (393)
T ss_dssp             ---H-HHHHHHSCS----SEEEEEECSSCTTTCCCCCHHHHHHHHHH--HTTTTTCEEEEECTTTHHHHC-CGGGGTCSE
T ss_pred             ---h-HHHHHhccc----CceEEEEECCCCCcceecCHHHHHHHHHH--hCCCCCCEEEEeCCccccccC-CHHHcCCeE
Confidence               7 889988863    57999999999999999999999999999  8    9999999999876543 444567999


Q ss_pred             EEecCCCcccCCCc--c-eEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhc
Q 015729          195 ALTGSQKALSLPTG--M-GIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG  270 (401)
Q Consensus       195 ~~~s~~K~l~g~~g--~-G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g  270 (401)
                      +++|.||+++ +.|  + |+++++ +++++.+...             .. ..|    .+.+....+.+..+++     .
T Consensus       197 ~~~S~sK~~g-~~G~rigG~~~~~~~~~~~~l~~~-------------~~-~~g----~~~~~~~~~~~~~~l~-----~  252 (393)
T 1n8p_A          197 VVHSATKYIN-GHSDVVLGVLATNNKPLYERLQFL-------------QN-AIG----AIPSPFDAWLTHRGLK-----T  252 (393)
T ss_dssp             EEEETTTTTT-CSSCCCCEEEEESCHHHHHHHHHH-------------HH-HHC----CCCCHHHHHHHHHHHT-----T
T ss_pred             EEEECccccc-CCCCceeEEEEeCCHHHHHHHHHH-------------HH-hcC----CCCCHHHHHHHHhccc-----h
Confidence            9999999884 655  5 899985 6776665421             00 012    1244433333333333     2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcC--Cc-cccC----CCc--------cC-C-ceeEEEEcCCC-CCHHHHHHHHHhhCCe
Q 015729          271 LENVIERHRRLGKATRLAVEAWG--LK-NCTQ----KEE--------WF-S-DTVTAVIVPSH-INSSEIVRRAWQRYNL  332 (401)
Q Consensus       271 ~~~~~~~~~~~~~~l~~~L~~~g--~~-~~~~----~~~--------~~-~-~~~~~~~~~~~-~~~~~l~~~L~~~~~i  332 (401)
                      +....++..++.+.+.+.|++..  +. +..+    .+.        .. . +.+++|.++.. .+...+...|. ..++
T Consensus       253 ~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~-~~~~  331 (393)
T 1n8p_A          253 LHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTR-LFTL  331 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCS-SSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCC-cceE
Confidence            34556666777778888887642  21 1111    000        01 3 56888998532 12333444332 2234


Q ss_pred             EEccCC------------C-----------CCCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          333 SLGLGL------------N-----------KVAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       333 ~v~~g~------------~-----------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      .+..|.            +           ....+.+|+|+....++++++.+.++|+++
T Consensus       332 ~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~  391 (393)
T 1n8p_A          332 AESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             CSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence            333331            0           011367999998888899999999888765

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.93  E-value=2.7e-24  Score=205.51  Aligned_cols=299  Identities=13%  Similarity=0.074  Sum_probs=197.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      .....++++.+++++|.+.   .+++++|++|+..++.+++++||+|+++.+.|++..  +...++..|++++.++.+  
T Consensus        81 ~p~~~~le~~lA~l~g~~~---~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~--  155 (430)
T 3ri6_A           81 NPTVEDLEQRLKNLTGALG---VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM--  155 (430)
T ss_dssp             CHHHHHHHHHHHHHHTCSE---EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT--
T ss_pred             CHHHHHHHHHHHHHHCCCc---EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC--
Confidence            4567899999999999865   566778899999999999999999999999888765  223677889999999876  


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                         |++++++++++    ++++|++++++||+|.+.|+++|.++|++  +|+++|+|++++.+.. .+....++|+++.|
T Consensus       156 ---d~~~l~~ai~~----~t~~v~~e~p~NptG~~~dl~~i~~la~~--~g~~livD~a~~~~~~-~~~~~~g~div~~S  225 (430)
T 3ri6_A          156 ---DSLAVEHACDE----TTKLLFLETISNPQLQVADLEALSKVVHA--KGIPLVVDTTMTPPYL-LEAKRLGVDIEVLS  225 (430)
T ss_dssp             ---CHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHT--TTCCEEEECTTSCTTT-CCGGGGTCSEEEEE
T ss_pred             ---CHHHHHHhhCC----CCeEEEEECCCCCCCeecCHHHHHHHHHH--cCCEEEEECCCccccc-CChHHcCCEEEEEC
Confidence               89999999874    67999999999999999999999999999  9999999999987765 44556789999999


Q ss_pred             CCCcccCCC-c-ceEEEecHHH-HHHhccCCCCcc---c--cchHHHHH---HhhcCCCCCCCCcHHHHHHHHHHHHHHH
Q 015729          199 SQKALSLPT-G-MGIVCASPKA-LEASKTAKSVRV---F--FDWKDYIK---FYNLGTFWPYTPSIQLLYGLRAALDLIF  267 (401)
Q Consensus       199 ~~K~l~g~~-g-~G~l~~~~~~-~~~~~~~~~~~~---~--~~~~~~~~---~~~~g~~~~~~~~~~~~~a~~~al~~~~  267 (401)
                      .+|+++|+. + .|+++.+.+. +..  ..+....   +  ..+.....   ....|    .+.+...++.+...++   
T Consensus       226 ~sK~l~g~g~~~gG~vv~~~~~~~~~--~~~~~~l~~~~g~~~~i~~~~~~~~~~~g----~~~~~~~a~l~l~~l~---  296 (430)
T 3ri6_A          226 STKFISGGGTSVGGVLIDHGLFEWKS--LPSLAPYYAKAGPMAFLYKARKEVFQNLG----PSLSPHNAYLQSLGLE---  296 (430)
T ss_dssp             CCCEEETTEEECCEEEEECSCSCGGG--STTTHHHHHHHGGGHHHHHHHHTHHHHHC----CCCCHHHHHHHHHHHH---
T ss_pred             CcccccCCCCceEEEEEECChHHhhh--ccchhhhhhhhchhhHHHHHHHHHHHhcC----CCCCHHHHHHHHhhhh---
Confidence            999997641 1 2666643321 100  0000000   0  00000000   01112    2344433322222222   


Q ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHc-CCcc-ccCC-Ccc----------CCce-eEEEEcCCCCCHHHHHHHHHhhCCeE
Q 015729          268 EEGLENVIERHRRLGKATRLAVEAW-GLKN-CTQK-EEW----------FSDT-VTAVIVPSHINSSEIVRRAWQRYNLS  333 (401)
Q Consensus       268 ~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~-~~~----------~~~~-~~~~~~~~~~~~~~l~~~L~~~~~i~  333 (401)
                        .+....++..++++.+.+.|++. ++.. ..+. ++.          ..+. +++|++++..++.++.+.|. .+++.
T Consensus       297 --~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~~~~~~~~~l~-~~~~~  373 (430)
T 3ri6_A          297 --TMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASYRFMDALK-LIRRA  373 (430)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHHCS-SSEEC
T ss_pred             --hHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHHHHHHHHHhCC-cceec
Confidence              24556777889999999999875 5442 2221 000          1134 89999962222334444442 23444


Q ss_pred             EccCCC-----------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          334 LGLGLN-----------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       334 v~~g~~-----------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      +..|..                       ...++.+|+|+.    .|+.+.+++.|+.+|
T Consensus       374 ~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG----~E~~~dl~~dl~~al  429 (430)
T 3ri6_A          374 TNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG----IEEIEDLKEDILQAL  429 (430)
T ss_dssp             SCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECC----SSCHHHHHHHHHHHH
T ss_pred             CCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHhh
Confidence            444421                       123567999864    467777777777665

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.93  E-value=7.3e-24  Score=201.53  Aligned_cols=282  Identities=15%  Similarity=0.146  Sum_probs=197.5

Q ss_pred             HHHHHHHccCcCC------CCCccH-HHHHHHHHHHHHHHhcCCCCceEEe---cCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           22 DQVIRAMNRNNED------YRSPAV-PALTKTLLEDIKKIFKTTSGTPFLI---PTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        22 ~~v~~a~~~~~~~------~~~~~~-~~~~~~l~~~la~~~g~~~~~~i~~---~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      ++|++++.+....      ..++.+ .....++++.+++++|.+.   .++   ++||++|+..++.++++|||+|++.+
T Consensus        47 ~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~e~---alv~p~~~sGt~A~~~al~all~pGD~Vl~~~  123 (427)
T 3hvy_A           47 LKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNTES---AFVRPHFVNGTHAIGAALFGNLRPNDTMMSIC  123 (427)
T ss_dssp             HHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSE---EEEETTCCSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             HHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCCCc---eEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeC
Confidence            5677887774211      111211 2247889999999999876   344   78999999999999999999999998


Q ss_pred             -CCcchHH-HH--------HHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEe----cCCCcccccchH
Q 015729           92 -IGQFSLL-WI--------DQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVH----NETATGVTNNLS  157 (401)
Q Consensus        92 -~~~~~~~-~~--------~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~----~~n~tG~~~~l~  157 (401)
                       +.|.+.. +.        ..++..|++++.++. .++.+|++++++++++.  +++|+|++++    ++||+|.+.|++
T Consensus       124 ~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~-~~~~~d~e~l~~~i~~~--~~tklV~i~~s~gyp~nptg~v~dl~  200 (427)
T 3hvy_A          124 GMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL-KDGKVDINTVKEELKKD--DSIKLIHIQRSTGYGWRKSLRIAEIA  200 (427)
T ss_dssp             SSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC-BTTBCCHHHHHHHHHHC--TTEEEEEEESSCCSSSSCCCCHHHHH
T ss_pred             CCCchhHHHHhccccchhhhHHHHcCCEEEEecC-CCCCcCHHHHHHHhhCC--CCCEEEEEECCCCCCCCccccHHHHH
Confidence             7666543 11        234567999999998 56779999999999841  2579999999    999999999999


Q ss_pred             HHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCC--CcceEEEecHHHHHHhccCCCCccccchH
Q 015729          158 KVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLP--TGMGIVCASPKALEASKTAKSVRVFFDWK  235 (401)
Q Consensus       158 ~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~--~g~G~l~~~~~~~~~~~~~~~~~~~~~~~  235 (401)
                      +|.++|+++++|+++++|++|+.+.........++|++++|.||++++.  +..|++++++++++++........     
T Consensus       201 ~i~~ia~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~-----  275 (427)
T 3hvy_A          201 EIIKSIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPG-----  275 (427)
T ss_dssp             HHHHHHHHHCSSSEEEEECTTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTT-----
T ss_pred             HHHHHHHHhCCCCEEEEECCccccccCCCCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCC-----
Confidence            9999999966799999999998776333444567999999999999762  223999999999887764210000     


Q ss_pred             HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC
Q 015729          236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS  315 (401)
Q Consensus       236 ~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  315 (401)
                             .|.  ...++..   .+..+++.+..  ....+++..+++..+++.|+++|+++.+.....+...++.|.+.+
T Consensus       276 -------~g~--~~~~~~~---~a~~~~~gl~~--~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~li~~~~l~~  341 (427)
T 3hvy_A          276 -------IGG--ECGSTFG---VMRSLYEGLFM--APHVTIEAVKGAVFCARIMELAGFDVLPKYNDKRTDIIQAIKFND  341 (427)
T ss_dssp             -------TGG--GCCCCTT---CHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSEEEEECSS
T ss_pred             -------ccc--ccCCCHH---HHHHHHHhHhH--HHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCceEEEEEeCCC
Confidence                   010  0112111   11223332222  245788889999999999999988774432222334477788843


Q ss_pred             CCCHHHHHHHHHh
Q 015729          316 HINSSEIVRRAWQ  328 (401)
Q Consensus       316 ~~~~~~l~~~L~~  328 (401)
                      .....++++.|..
T Consensus       342 ~~~~~~f~~~l~~  354 (427)
T 3hvy_A          342 EKKLIDFIKGIQT  354 (427)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            2234467777754

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.93  E-value=6.6e-24  Score=201.80  Aligned_cols=285  Identities=15%  Similarity=0.127  Sum_probs=200.9

Q ss_pred             HHHHHHHccCcC------CCCCcc-HHHHHHHHHHHHHHHhcCCCCceEEe--cCChhHHHHHHHhccCCCCCeEEEEc-
Q 015729           22 DQVIRAMNRNNE------DYRSPA-VPALTKTLLEDIKKIFKTTSGTPFLI--PTTGTGAWESALTNTLSPGDRIISFL-   91 (401)
Q Consensus        22 ~~v~~a~~~~~~------~~~~~~-~~~~~~~l~~~la~~~g~~~~~~i~~--~~g~t~a~~~~~~~~~~~gd~vl~~~-   91 (401)
                      ++|++++.+...      ...++. ......++++.+++++|.+..  +++  ++||++|+..++.++++|||+|++.+ 
T Consensus        46 ~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g~e~a--lv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~  123 (427)
T 3i16_A           46 LKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTESA--LVRPHFVNGTHALGAALFGNLRPGNTMLSVCG  123 (427)
T ss_dssp             HHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSEE--EEETTCCSHHHHHHHHHHHHCCTTCEEEESSS
T ss_pred             HHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCcce--EEeCCCccHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            568888865321      111121 123478899999999998752  443  78999999999999999999999998 


Q ss_pred             CCcchHH-HH--------HHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEe----cCCCcccccchHH
Q 015729           92 IGQFSLL-WI--------DQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVH----NETATGVTNNLSK  158 (401)
Q Consensus        92 ~~~~~~~-~~--------~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~----~~n~tG~~~~l~~  158 (401)
                      +.|.+.. ..        ..++..|++++.++.++++.+|++++++++++.  +++++|++++    ++||+|.+.|+++
T Consensus       124 ~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~--~~tklV~i~~s~~~p~nptg~i~dl~~  201 (427)
T 3i16_A          124 EPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKED--ESITLVHIQRSTGYGWRRALLIEDIKS  201 (427)
T ss_dssp             SCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTC--TTEEEEEEECSCCSSSSCCCCHHHHHH
T ss_pred             CccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCC--CCCEEEEEEcCCCCCCCCcccHHHHHH
Confidence            7666554 21        334667999999999888889999999999731  2579999999    9999999999999


Q ss_pred             HHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCC--CcceEEEecHHHHHHhccCCCCccccchHH
Q 015729          159 VRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLP--TGMGIVCASPKALEASKTAKSVRVFFDWKD  236 (401)
Q Consensus       159 i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~--~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~  236 (401)
                      |.++|+++++|+++++|++|+.+.........++|++++|.||+++++  +..|++++++++++++........      
T Consensus       202 i~~la~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~------  275 (427)
T 3i16_A          202 IVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPG------  275 (427)
T ss_dssp             HHHHHHHHCTTSEEEEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTT------
T ss_pred             HHHHHHHhCCCCEEEEECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCc------
Confidence            999999977899999999998776333444568999999999999752  334999999999887764210000      


Q ss_pred             HHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCC
Q 015729          237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH  316 (401)
Q Consensus       237 ~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~  316 (401)
                          +  |.  ...++..   +...+++.+..  ....+++..+++..+.+.|+++|+++.+.....+...++.|.+.+.
T Consensus       276 ----~--g~--~~~~~~~---~a~~~l~gl~~--~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~~i~~i~l~~~  342 (427)
T 3i16_A          276 ----I--GG--ECGSTFG---VVRSMYQGLFL--APHISMEALKGAILCSRIMELAGFEVMPKYDEKRSDIIQSIKFNDK  342 (427)
T ss_dssp             ----T--GG--GCCCCTT---CHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCEEEECSSH
T ss_pred             ----c--Cc--cCCccHH---HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCccEEEEEEECCH
Confidence                0  10  0011110   12333333322  2567888999999999999999887744322223344778888533


Q ss_pred             CCHHHHHHHHHhh
Q 015729          317 INSSEIVRRAWQR  329 (401)
Q Consensus       317 ~~~~~l~~~L~~~  329 (401)
                      ....++++.|...
T Consensus       343 ~~~~~f~~~l~~~  355 (427)
T 3i16_A          343 DKLIEFCKGIQTG  355 (427)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhc
Confidence            3345677777643

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.93  E-value=9.6e-25  Score=210.85  Aligned_cols=322  Identities=16%  Similarity=0.164  Sum_probs=214.3

Q ss_pred             ChHHHH-H-HHcc---CcCC--CCC-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC---C------
Q 015729           20 IPDQVI-R-AMNR---NNED--YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL---S------   82 (401)
Q Consensus        20 ~~~~v~-~-a~~~---~~~~--~~~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~---~------   82 (401)
                      .+|.++ + ++.+   ....  +.+ ....+...++.+.++++++....+++++++||++|++.++....   +      
T Consensus        71 ~~p~v~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~  150 (449)
T 2cjg_A           71 NPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAH  150 (449)
T ss_dssp             SCHHHHTCHHHHHHHHHHHTCCCCTTTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhccccccc
Confidence            367777 6 6665   3221  211 12345577899999999973333469999999999999885422   2      


Q ss_pred             -----CCCeEEEEcCCcchHHHH--HH-----HHHcCC-----cEEEEeCCC--CC--------CCChHHHHHHHhccCC
Q 015729           83 -----PGDRIISFLIGQFSLLWI--DQ-----QQRLNF-----NVDVVESDW--GE--------GAKLDVLASKLAADTA  135 (401)
Q Consensus        83 -----~gd~vl~~~~~~~~~~~~--~~-----~~~~g~-----~~~~v~~~~--~~--------~~d~~~le~~~~~~~~  135 (401)
                           ++|+|++.+++||+....  ..     ....+.     ++..++.+.  ..        ..+++++++.+++.+ 
T Consensus       151 ~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~-  229 (449)
T 2cjg_A          151 GIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRP-  229 (449)
T ss_dssp             TSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHST-
T ss_pred             ccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcC-
Confidence                 289999999988875421  10     011222     455555543  11        135566999886432 


Q ss_pred             CCceEEEEEecCCCcccccc----hHHHHHHhhhcCCCcEEEEecccc-cCcc--e--eccCcccceEEEecCCCcccCC
Q 015729          136 HTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSS-ICAI--D--FRMDEWGIDVALTGSQKALSLP  206 (401)
Q Consensus       136 ~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~-~~~~--~--~~~~~~~~di~~~s~~K~l~g~  206 (401)
                      +++++|++++++|++|...+    +++|.++|++  +|+++|+|++|+ ++..  .  ++.....+|++++|  |++   
T Consensus       230 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~--~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~s--K~l---  302 (449)
T 2cjg_A          230 HDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDE--FDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFG--KKT---  302 (449)
T ss_dssp             TTEEEEEECSEETTTTCEECCHHHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGG---
T ss_pred             CceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHH--CCcEEEEeccccCCCccCcceeecccCCCceEEEec--Ccc---
Confidence            46788888888899997666    8999999999  999999999998 3211  1  12122356877655  988   


Q ss_pred             CcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 015729          207 TGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATR  286 (401)
Q Consensus       207 ~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~  286 (401)
                       ++|++++++++.+.+.+.....           ...+  ..++.++..+++..++++.+.++   ...++..++.++++
T Consensus       303 -~iG~~~~~~~~~~~l~~~~~~~-----------~~~~--~t~~~n~~~~~aa~aal~~~~~~---~~~~~~~~~~~~l~  365 (449)
T 2cjg_A          303 -QVCGVMAGRRVDEVADNVFAVP-----------SRLN--STWGGNLTDMVRARRILEVIEAE---GLFERAVQHGKYLR  365 (449)
T ss_dssp             -SSEEEEECGGGGGSTTCTTTST-----------TSSC--CSSSSCHHHHHHHHHHHHHHHHH---THHHHHHHHHHHHH
T ss_pred             -cEEEEEECHHHhhhhhhcccCC-----------cccc--cCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHH
Confidence             4799999988766533210000           0001  13446677778888888877664   36677888889999


Q ss_pred             HHHHHc--CCcc-ccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHH
Q 015729          287 LAVEAW--GLKN-CTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCL  363 (401)
Q Consensus       287 ~~L~~~--g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~  363 (401)
                      +.|+++  +++. .....  ..+.++++.+++..+..++.+.|.++ ||.+.++.    .+++|+++...++++|+++++
T Consensus       366 ~~L~~l~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~g----~~~iRi~~~~~~t~e~i~~~l  438 (449)
T 2cjg_A          366 ARLDELAADFPAVVLDPR--GRGLMCAFSLPTTADRDELIRQLWQR-AVIVLPAG----ADTVRFRPPLTVSTAEIDAAI  438 (449)
T ss_dssp             HHHHHHHHHSTTTSEEEE--EETTEEEEECSSHHHHHHHHHHHHHT-TEECEEET----TTEEEECCCTTCCHHHHHHHH
T ss_pred             HHHHHHHhhCCCceeeEe--eccEEEEEEECChHHHHHHHHHHHHC-CeEEecCC----CCEEEEECCCCCCHHHHHHHH
Confidence            998875  3332 21111  12446677875422456788999865 99988762    478999887788999999999


Q ss_pred             HHHHHHHHhc
Q 015729          364 AGVEMILKDV  373 (401)
Q Consensus       364 ~~i~~~l~~~  373 (401)
                      ++|+++++++
T Consensus       439 ~~l~~~l~~~  448 (449)
T 2cjg_A          439 AAVRSALPVV  448 (449)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998753

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.93  E-value=1.5e-24  Score=208.75  Aligned_cols=312  Identities=14%  Similarity=0.096  Sum_probs=207.8

Q ss_pred             ChHHHHHHHccCcCCCC-CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCC--CCCeEEEEcCCcch
Q 015729           20 IPDQVIRAMNRNNEDYR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS--PGDRIISFLIGQFS   96 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~--~gd~vl~~~~~~~~   96 (401)
                      .+|++++++.+...... .....+...+++++++++++ . .+++++++|||+|++.++.....  ++++|++.+++|++
T Consensus        72 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~-~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg  149 (434)
T 3l44_A           72 AHPHITKAITTAAENGVLYGTPTALEVKFAKMLKEAMP-A-LDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHG  149 (434)
T ss_dssp             TCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHHCT-T-CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC
T ss_pred             CCHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHhCC-C-CCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCC
Confidence            46777777766432211 11234566789999999987 3 34599999999999999876543  67899999998887


Q ss_pred             HHHHHHHHHcCC-------------------cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc--
Q 015729           97 LLWIDQQQRLNF-------------------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN--  155 (401)
Q Consensus        97 ~~~~~~~~~~g~-------------------~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~--  155 (401)
                      ...... ...|.                   ++..++.+     |++++++++++.. +++++|+++++++++|.+.+  
T Consensus       150 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~  222 (434)
T 3l44_A          150 HSDLVL-VAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN-----NVETLKEALDKWG-HEVAAILVEPIVGNFGIVEPKP  222 (434)
T ss_dssp             SSGGGG-BC-------CCCBSSTTCCHHHHTTEEEECTT-----CHHHHHHHHHHHG-GGEEEEEECSSBCTTSCBCCCT
T ss_pred             CcHHHH-hhcCCcccccCCCCcCCCCCcCCCceEecCcc-----cHHHHHHHHHhCC-CCEEEEEEcCCCCCCCCccCCH
Confidence            542110 00111                   23333322     8999999997532 35678888888888888887  


Q ss_pred             --hHHHHHHhhhcCCCcEEEEecccccC---cc-eeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCc
Q 015729          156 --LSKVRKLLDEYRHPALFLVDGVSSIC---AI-DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR  229 (401)
Q Consensus       156 --l~~i~~l~~~~~~~~~li~D~a~~~~---~~-~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~  229 (401)
                        +++|.++|++  +|+++|+|++|...   .. ..+.....+|++++|  |.++++.++|++++++++++.+.....  
T Consensus       223 ~~l~~l~~l~~~--~~illI~DEv~~g~~~g~~~~~~~~~~~~di~t~s--K~~~~G~~iG~~~~~~~i~~~~~~~~~--  296 (434)
T 3l44_A          223 GFLEKVNELVHE--AGALVIYDEVITAFRFMYGGAQDLLGVTPDLTALG--KVIGGGLPIGAYGGKKEIMEQVAPLGP--  296 (434)
T ss_dssp             THHHHHHHHHHT--TTCEEEEECTTTTTTSSSSCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECHHHHTTBTTTSS--
T ss_pred             HHHHHHHHHHHH--cCCEEEEeccccceeccccHHHHHcCCCCCeeehh--hhhcCCcCeeeEEEcHHHHHhhccCCC--
Confidence              9999999999  99999999999732   11 011122346776665  988777788999999999877654210  


Q ss_pred             cccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCC
Q 015729          230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFS  305 (401)
Q Consensus       230 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~  305 (401)
                      ..           .+  .+++.++..+++..++++.+.++   ...++.+++.+++++.|+++    ++.....    ..
T Consensus       297 ~~-----------~~--~t~~~~~~a~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~  356 (434)
T 3l44_A          297 AY-----------QA--GTMAGNPASMASGIACLEVLQQE---GLYEKLDELGATLEKGILEQAAKHNIDITLN----RL  356 (434)
T ss_dssp             BC-----------CC--CTTTTCHHHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHTTCCEEEE----EE
T ss_pred             cc-----------cC--CCCCcCHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHHHHHHhCCCCEEEE----ee
Confidence            00           01  13456777777788888876543   45666777777777777663    3221111    23


Q ss_pred             ceeEEEEcCCC-C------------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          306 DTVTAVIVPSH-I------------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       306 ~~~~~~~~~~~-~------------~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      +.++++.+.+. .            ...++.+.|.++ ||.++++..    ..+|+++  ..|++|+++++++|++++++
T Consensus       357 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~----~~~rl~~--~~t~e~i~~~l~~l~~~l~~  429 (434)
T 3l44_A          357 KGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQE-GVNLAPSKY----EAWFLTT--EHTKEDIEYTIEAVGRAFAA  429 (434)
T ss_dssp             TTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHT-TEECCSSTT----CCEECCT--TCCHHHHHHHHHHHHHHHHH
T ss_pred             ccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHC-CeEEeecCC----CcEEEec--ccCHHHHHHHHHHHHHHHHH
Confidence            34666666221 1            125688888876 999987632    4678853  46999999999999999876


Q ss_pred             c
Q 015729          373 V  373 (401)
Q Consensus       373 ~  373 (401)
                      +
T Consensus       430 ~  430 (434)
T 3l44_A          430 L  430 (434)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.93  E-value=4.9e-25  Score=214.18  Aligned_cols=306  Identities=12%  Similarity=0.081  Sum_probs=194.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCC-----C----CeEEEEcCCcchHHHHHHHHHcCCcEE
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSP-----G----DRIISFLIGQFSLLWIDQQQRLNFNVD  111 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~-----g----d~vl~~~~~~~~~~~~~~~~~~g~~~~  111 (401)
                      .....++++.++++++.+   .+++++|||+|++.++.++.++     |    |+|++. ..|+... .......|+.+.
T Consensus        73 ~~~~~~l~~~la~~~~~~---~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~-~~h~~t~-~~~~~~~~~~~~  147 (467)
T 2oqx_A           73 SRSYYALAESVKNIFGYQ---YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFS-NYFFDTT-QGHSQINGCTVR  147 (467)
T ss_dssp             CHHHHHHHHHHHHHHCCS---EEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEE-SSCCHHH-HHHHHHTTCEEE
T ss_pred             CchhHHHHHHHHHHhCcC---cEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEec-ccccccc-hhhhhccCccee
Confidence            456779999999999874   4999999999999999887777     8    887766 5454432 233444566554


Q ss_pred             EEe------CC----CCCCCChHHHHHHHhccCCCCceEEEEEecCCCc-ccccc---hHHHHHHhhhcCCCcEEEEecc
Q 015729          112 VVE------SD----WGEGAKLDVLASKLAADTAHTIKAICIVHNETAT-GVTNN---LSKVRKLLDEYRHPALFLVDGV  177 (401)
Q Consensus       112 ~v~------~~----~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~t-G~~~~---l~~i~~l~~~~~~~~~li~D~a  177 (401)
                      ...      .+    .++.+|+++|++++++...+++++|++++++||+ |.+++   +++|.++|++  +|++||+|++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~--~gi~li~D~a  225 (467)
T 2oqx_A          148 NVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK--YDIPVVMDSA  225 (467)
T ss_dssp             ECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH--TTCCEEEECT
T ss_pred             eccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHH--cCCEEEEEch
Confidence            431      12    3456799999999974211257999999999998 77764   7789999999  9999999987


Q ss_pred             ccc-Cc----------ceeccCc------ccceEEEecCCCcccCCCcceEEEecHH-HHHHhccCCCCccccchHHHHH
Q 015729          178 SSI-CA----------IDFRMDE------WGIDVALTGSQKALSLPTGMGIVCASPK-ALEASKTAKSVRVFFDWKDYIK  239 (401)
Q Consensus       178 ~~~-~~----------~~~~~~~------~~~di~~~s~~K~l~g~~g~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~  239 (401)
                      |+. +.          ...+...      ..+|++++|.||+++.+.| |+++.+++ +++.+...         ... .
T Consensus       226 ~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~~~~~~~~~~~---------~~~-~  294 (467)
T 2oqx_A          226 RFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDVYTEC---------RTL-C  294 (467)
T ss_dssp             THHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHHHHHH---------HHH-H
T ss_pred             hhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCCCc-eEEEecChhHHHHHHHH---------HHh-h
Confidence            755 21          1111111      2478889999999964445 77887766 33322110         000 0


Q ss_pred             HhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcH-HHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC---
Q 015729          240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGL-ENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS---  315 (401)
Q Consensus       240 ~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~---  315 (401)
                      .+..+....++.+...++++..+++    ..+ +...++..++.+++.+.|+++|+++. +.    .+.++++.+++   
T Consensus       295 ~~~~~~~~~~~~~~~~~~al~~~l~----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~----~~~~~~~~~~~~~~  365 (467)
T 2oqx_A          295 VVQEGFPTYGGLEGGAMERLAVGLY----DGMNLDWLAYRIAQVQYLVDGLEEIGVVCQ-QA----GGHAAFVDAGKLLP  365 (467)
T ss_dssp             HHTTSSCCCCCCCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHHTTCCEE-EE----CSSCEEEEHHHHST
T ss_pred             hccCCcccccchhhhHHHHHHHhhH----hhhhHHHHHHHHHHHHHHHHHHHHCCCeee-cC----CceEEEEechhhcc
Confidence            0011111112233322222222222    112 23455567888899999988877765 32    23466677631   


Q ss_pred             CCC-----HHHHHHHH-HhhCCeEEccCCC------C-------CCCcEEEEeeccc-CCHHHHHHHHHHHHHHHHhcC
Q 015729          316 HIN-----SSEIVRRA-WQRYNLSLGLGLN------K-------VAGKVFRIGHLGH-LNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       316 ~~~-----~~~l~~~L-~~~~~i~v~~g~~------~-------~~~~~~Ri~~~~~-~~~~di~~~~~~i~~~l~~~~  374 (401)
                      +.+     ..++++.| .++ ||.+.++..      +       ...+++|+++... ++++|+++++++|++++++..
T Consensus       366 ~~~~~~~~~~~l~~~L~~~~-gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~  443 (467)
T 2oqx_A          366 HIPADQFPAQALACELYKVA-GIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA  443 (467)
T ss_dssp             TSCGGGCHHHHHHHHHHHHH-CEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred             cCCcccccHHHHHHHHHHhc-CceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            233     34458888 555 999887431      1       0126899998877 899999999999999997653

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.93  E-value=4.2e-24  Score=205.22  Aligned_cols=311  Identities=15%  Similarity=0.073  Sum_probs=209.4

Q ss_pred             ChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcc
Q 015729           20 IPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQF   95 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~   95 (401)
                      .+|.+++++.+....  +..+ ..+...++.+.++++++ + .+++++++||++|++.++..  ....+++|++.+++|+
T Consensus        69 ~~p~v~~a~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-~-~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yh  145 (427)
T 3fq8_A           69 AHPEVIEALKVAMEKGTSFGA-PCALENVLAEMVNDAVP-S-IEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYH  145 (427)
T ss_dssp             TCHHHHHHHHHHHTTCSCCSS-CCHHHHHHHHHHHHHST-T-CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCC
T ss_pred             CCHHHHHHHHHHHHhCCCcCC-CCHHHHHHHHHHHHhCC-C-CCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcC
Confidence            367777777764432  2222 45677899999999987 3 34699999999999998833  1234578999988887


Q ss_pred             hHHHHHH------HHH------cC------CcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc--
Q 015729           96 SLLWIDQ------QQR------LN------FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN--  155 (401)
Q Consensus        96 ~~~~~~~------~~~------~g------~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~--  155 (401)
                      +......      ...      .|      ..+..++.+     |++++++++++.+ +++++|+++++++++|.+.+  
T Consensus       146 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~-~~~~~vi~~p~~~~~G~~~~~~  219 (427)
T 3fq8_A          146 GHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKALFAENP-GEIAGVILEPIVGNSGFIVPDA  219 (427)
T ss_dssp             CSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-----CHHHHHHHHHHST-TTEEEEEECSSBCTTSCBCCCT
T ss_pred             CCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-----CHHHHHHHHHhCC-CCEEEEEEcCCcCCCCCcCCCH
Confidence            6431100      000      01      123444433     8999999998644 46789999988899999998  


Q ss_pred             --hHHHHHHhhhcCCCcEEEEecccccC---c-ceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCc
Q 015729          156 --LSKVRKLLDEYRHPALFLVDGVSSIC---A-IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR  229 (401)
Q Consensus       156 --l~~i~~l~~~~~~~~~li~D~a~~~~---~-~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~  229 (401)
                        +++|.++|++  +|++||+|++|+..   . ...+.....+|+.++|  |+++++.++|++++++++++.+.....  
T Consensus       220 ~~l~~l~~l~~~--~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t~s--K~~~~G~~~G~~~~~~~~~~~~~~~~~--  293 (427)
T 3fq8_A          220 GFLEGLREITLE--HDALLVFDEVITGFRIAYGGVQEKFGVTPDLTTLG--KIIGGGLPVGAYGGKREIMQLVAPAGP--  293 (427)
T ss_dssp             THHHHHHHHHHH--TTCEEEEECTTTBTTTBTTHHHHHTTCCCSEEEEC--GGGGTTSSCEEEEECHHHHTTBTTTSS--
T ss_pred             HHHHHHHHHHHH--cCCEEEEeccccccccCcchhhHhcCCCCChhhhh--hhhhCCcceEEEEEcHHHHHhhccCCC--
Confidence              9999999999  99999999999832   1 1112223346776665  999766668999999999887764210  


Q ss_pred             cccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCC
Q 015729          230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFS  305 (401)
Q Consensus       230 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~  305 (401)
                      ..           .+  .+++.++..+++..++++.+.++   ...++.+++.+++++.|+++    ++.....    ..
T Consensus       294 ~~-----------~~--~t~~~~~~~~aa~~aal~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~  353 (427)
T 3fq8_A          294 MY-----------QA--GTLSGNPLAMTAGIKTLELLRQP---GTYEYLDQITKRLSDGLLAIAQETGHAACGG----QV  353 (427)
T ss_dssp             BC-----------CC--CTTTTCHHHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHTTCCCEEE----EE
T ss_pred             cc-----------cc--CCCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE----Ee
Confidence            00           01  13345777777888888866543   35666777777777777664    2222111    23


Q ss_pred             ceeEEEEcCCC-CC------------HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          306 DTVTAVIVPSH-IN------------SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       306 ~~~~~~~~~~~-~~------------~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      +.++++.+++. ..            ..++.+.|.++ ||.+.++..    .  |+.+....+++|+++++++|++++++
T Consensus       354 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gi~v~~~~~----~--r~~~~~~~t~e~i~~~l~~l~~~l~~  426 (427)
T 3fq8_A          354 SGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ-GIYLAPSQF----E--AGFTSLAHTEEDIDATLAAARTVMSA  426 (427)
T ss_dssp             TTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSSTT----S--CEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEEecCccccccccccccHHHHHHHHHHHHHC-CcEEecCCC----C--CEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence            45777777532 11            34788888876 999887643    2  44444567999999999999999875

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.92  E-value=1.4e-24  Score=208.67  Aligned_cols=313  Identities=12%  Similarity=0.050  Sum_probs=207.6

Q ss_pred             ChHHHHHHHccCcCCCC-CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC--CCCCeEEEEcCCcch
Q 015729           20 IPDQVIRAMNRNNEDYR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL--SPGDRIISFLIGQFS   96 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~--~~gd~vl~~~~~~~~   96 (401)
                      .+|++++++.+...... .....+...+++++++++++ . .+++++++||++|++.++....  .++++|++.+++||+
T Consensus        70 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~-~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg  147 (429)
T 3k28_A           70 ANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVP-S-IEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHG  147 (429)
T ss_dssp             SCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHHST-T-CSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCC
T ss_pred             CCHHHHHHHHHHHhhCcCcCCCCHHHHHHHHHHHHhCC-C-CCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCC
Confidence            46777777766432211 11234567789999999986 2 3459999999999999886644  367889999888876


Q ss_pred             HHHHHHHHHcCC-------------------cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc--
Q 015729           97 LLWIDQQQRLNF-------------------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN--  155 (401)
Q Consensus        97 ~~~~~~~~~~g~-------------------~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~--  155 (401)
                      ..... ....|.                   +++.++.+     |++++++++++.+ +++++++++.+++++|.+.+  
T Consensus       148 ~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~  220 (429)
T 3k28_A          148 HGDSL-LIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN-----DLESVKYAFEQFG-DDIACVIVEPVAGNMGVVPPQP  220 (429)
T ss_dssp             SCGGG-CSSCCTTC-----CCCTTCCHHHHTTEEEEETT-----CHHHHHHHHHHHG-GGEEEEEECSSBCTTSCBCCCT
T ss_pred             CcHHH-HHhcCCcccccCCCCcCCCCCcccCceeecCCC-----CHHHHHHHHHhCC-CCEEEEEEcCCCCCCCcccCCH
Confidence            54211 111111                   23333322     7999999987533 35678888888888898887  


Q ss_pred             --hHHHHHHhhhcCCCcEEEEecccccCc----ceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCc
Q 015729          156 --LSKVRKLLDEYRHPALFLVDGVSSICA----IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR  229 (401)
Q Consensus       156 --l~~i~~l~~~~~~~~~li~D~a~~~~~----~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~  229 (401)
                        +++|.++|++  +|+++|+|++|....    ...+.....+|++++|  |+++++.++|++++++++++.+.....  
T Consensus       221 ~~l~~l~~l~~~--~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t~s--K~~~~G~~iG~~~~~~~~~~~~~~~~~--  294 (429)
T 3k28_A          221 GFLEGLREVTEQ--NGALLIFDEVMTGFRVAYNCGQGYYGVTPDLTCLG--KVIGGGLPVGAYGGKAEIMRQVAPSGP--  294 (429)
T ss_dssp             THHHHHHHHHHH--HTCEEEEECTTTTTTSSTTHHHHHHTCCCSEEEEC--GGGGTTSCCEEEEECHHHHTTBTTTSS--
T ss_pred             HHHHHHHHHHHH--cCCEEEEeccccccccCcchHHHHhCCCCceehhh--hhhcCCCCeEEEEEcHHHHhhhccCCC--
Confidence              9999999999  999999999997320    0011112346776655  999776778999999998877654211  


Q ss_pred             cccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCce
Q 015729          230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDT  307 (401)
Q Consensus       230 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~  307 (401)
                      ..           .+  .+++.++..+++..++++...    ++..++.+++.+++++.|+++  .+.......  ..+.
T Consensus       295 ~~-----------~~--~t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~~g~  355 (429)
T 3k28_A          295 IY-----------QA--GTLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGLRKAAEKHGIPHHIN--RAGS  355 (429)
T ss_dssp             BC-----------CC--CTTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE--EETT
T ss_pred             cc-----------cc--CCCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEE--eecc
Confidence            00           01  134566666666666666432    567788888888888888774  222211111  2344


Q ss_pred             eEEEEcCCCC-------------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          308 VTAVIVPSHI-------------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       308 ~~~~~~~~~~-------------~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ++++.+.+..             ...++.+.|+++ ||.+.++.    .+.+|+++  ..+++|+++++++|+++++++
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~r~~~--~~t~e~i~~~l~~l~~~l~~~  427 (429)
T 3k28_A          356 MIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQ-GVFLPPSQ----FEGLFLST--VHSDADIEATIAAAEIAMSKL  427 (429)
T ss_dssp             EEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSST----TSCBCCCT--TCCHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEEecCCcccccccccccHHHHHHHHHHHHHC-CeEEecCC----CCCEEEEC--CCCHHHHHHHHHHHHHHHHHH
Confidence            6667663211             135788888876 99988762    34578754  569999999999999999865

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.92  E-value=4.1e-23  Score=198.42  Aligned_cols=312  Identities=12%  Similarity=0.018  Sum_probs=204.8

Q ss_pred             ChHHHHHHHccCcCCCC-CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--CCCCCeEEEEcCCcch
Q 015729           20 IPDQVIRAMNRNNEDYR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFS   96 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~~~gd~vl~~~~~~~~   96 (401)
                      .+|++++++.+...... ...+.+...++.++++++++ . .+.+++++||++|++.++...  ..++++|++.+++||+
T Consensus        70 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~-~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg  147 (429)
T 4e77_A           70 NHPAIRQAVIEAVERGLSFGAPTEMEVKMAQLVTDLVP-T-MDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHG  147 (429)
T ss_dssp             TCHHHHHHHHHHHTTCSCCSSCCHHHHHHHHHHHHHST-T-CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC
T ss_pred             CCHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHhhCC-C-CCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCC
Confidence            36778887777543211 11234667789999999987 3 345999999999999988642  2456789999998887


Q ss_pred             HHHHHHH-HHcCC-----------------cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---
Q 015729           97 LLWIDQQ-QRLNF-----------------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---  155 (401)
Q Consensus        97 ~~~~~~~-~~~g~-----------------~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---  155 (401)
                      .....+. ...+.                 .+..++.+     |++++++++++.. +++++|+++++++++|.+.+   
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~-~~~~~vi~ep~~~~~g~~~~~~~  221 (429)
T 4e77_A          148 HADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYN-----DLASVRQAFEQYP-QEVACIIVEPVAGNMNCIPPLPE  221 (429)
T ss_dssp             ------------------CCCTTSCGGGGTTEEEECTT-----CHHHHHHHHHHST-TTEEEEEECSSBCTTSCBCCCTT
T ss_pred             CChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCC-----CHHHHHHHHHhcC-CCEEEEEECCccCCCCCcCCCHH
Confidence            6531111 10111                 12222221     8999999998643 35677777766677788877   


Q ss_pred             -hHHHHHHhhhcCCCcEEEEecccccC---cc-eeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCcc
Q 015729          156 -LSKVRKLLDEYRHPALFLVDGVSSIC---AI-DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV  230 (401)
Q Consensus       156 -l~~i~~l~~~~~~~~~li~D~a~~~~---~~-~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~  230 (401)
                       +++|.++|++  +|+++|+|++|+..   .. ..+.....+|++++|  |+++++.++|++++++++++.+.....  .
T Consensus       222 ~l~~l~~l~~~--~~~lli~DEv~~g~r~g~~~~~~~~~~~pdi~t~s--K~~~~G~~~G~~~~~~~~~~~l~~~~~--~  295 (429)
T 4e77_A          222 FLPGLRALCDE--FGALLIIDEVMTGFRVALAGAQDYYHVIPDLTCLG--KIIGGGMPVGAFGGRREVMNALAPTGP--V  295 (429)
T ss_dssp             HHHHHHHHHHH--HTCEEEEEETTTBTTTBTTCHHHHTTCCCSEEEEE--GGGGTTSCCEEEEECHHHHTTBTTTSS--B
T ss_pred             HHHHHHHHHHH--cCCEEEEeccccCcccCcchHHHhcCCCCCeeeec--ccccCCCCeEEEEECHHHHHHhccCCC--c
Confidence             8999999999  99999999999822   11 112222345776554  999876778999999998877654210  0


Q ss_pred             ccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCCc
Q 015729          231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFSD  306 (401)
Q Consensus       231 ~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~  306 (401)
                      +             ...+++.++..+++..++++.+.++   ...++.+++.+++++.|+++    ++.....    ..+
T Consensus       296 ~-------------~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~g  355 (429)
T 4e77_A          296 Y-------------QAGTLSGNPIAMAAGFACLTEISQV---GVYETLTELTDSLATGLRHAAKEENIPLVVN----HVG  355 (429)
T ss_dssp             C-------------C--CCCCCHHHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHTTCCCEEE----EET
T ss_pred             c-------------ccCCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCceEEE----Eee
Confidence            0             0113457777778888888876443   45666677777777777653    3322211    234


Q ss_pred             eeEEEEcCCCC--------------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          307 TVTAVIVPSHI--------------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       307 ~~~~~~~~~~~--------------~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .++++.+++..              ...++.+.|.++ ||.+.++..    ..+|++  ...+++|+++++++|++++++
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~----~~~~~~--~~~t~e~i~~~l~~l~~~l~~  428 (429)
T 4e77_A          356 GMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPSAF----EAGFMS--LAHSNEDIQKTVNAARRCFAK  428 (429)
T ss_dssp             TEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSSTT----SCEECC--TTCCHHHHHHHHHHHHHHHTT
T ss_pred             eEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeecCC----CCEEEe--ccCCHHHHHHHHHHHHHHHHh
Confidence            57778875431              126788888877 999987642    245654  457999999999999998864

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.92  E-value=1.8e-23  Score=201.21  Aligned_cols=312  Identities=17%  Similarity=0.096  Sum_probs=211.3

Q ss_pred             ChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcc
Q 015729           20 IPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQF   95 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~   95 (401)
                      .++.+.+++.+....  +.. ...+...++++.++++++ . .+.+++++||++|++.++..  .+.++++|++.+++|+
T Consensus        73 ~~~~v~~a~~~~~~~~~~~~-~~~~~~~~l~~~la~~~~-~-~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yh  149 (434)
T 2epj_A           73 KHPRVLEAVEEALARGWLYG-APGEAEVLLAEKILGYVK-R-GGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYH  149 (434)
T ss_dssp             TCHHHHHHHHHHHHTCSCCS-SCCHHHHHHHHHHHHHHC-T-TCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCC
T ss_pred             CCHHHHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHHhCC-C-CCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcC
Confidence            567777777764432  122 234667789999999985 2 34599999999999998865  2445678999988887


Q ss_pred             hHHHHHH--H----------HHcCC------cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc--
Q 015729           96 SLLWIDQ--Q----------QRLNF------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN--  155 (401)
Q Consensus        96 ~~~~~~~--~----------~~~g~------~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~--  155 (401)
                      +.....+  .          ...|+      ++..++.+     |++++++++++.. +++++|+++++++++|.+.+  
T Consensus       150 g~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~  223 (434)
T 2epj_A          150 GSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN-----DVEALERVFAEYG-DRIAGVIVEPVIANAGVIPPRR  223 (434)
T ss_dssp             CSSGGGSEECC------CEESSTTCCHHHHTTEEEEETT-----CHHHHHHHHHHHG-GGEEEEEECSSBCSSSCBCCCH
T ss_pred             CCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCC-----CHHHHHHHHHhCC-CCEEEEEEeCCcCCCCccCCCH
Confidence            6432110  0          01232      35555542     8999999997532 25688888877788999887  


Q ss_pred             --hHHHHHHhhhcCCCcEEEEecccccCcc--ee--ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCc
Q 015729          156 --LSKVRKLLDEYRHPALFLVDGVSSICAI--DF--RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR  229 (401)
Q Consensus       156 --l~~i~~l~~~~~~~~~li~D~a~~~~~~--~~--~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~  229 (401)
                        +++|.++|++  +|+++|+|++|+....  .+  +.....+|++++  +|+++++.++|++++++++++.+.....  
T Consensus       224 ~~l~~l~~l~~~--~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~s~--sK~l~~G~~~G~v~~~~~~~~~l~~~~~--  297 (434)
T 2epj_A          224 EFLAALQRLSRE--SGALLILDEVVTGFRLGLEGAQGYFNIEGDIIVL--GKIIGGGFPVGAVAGSREVMSLLTPQGK--  297 (434)
T ss_dssp             HHHHHHHHHHHH--HTCEEEEEETTTTTTSSTTHHHHHHTCCCSEEEE--EGGGGTTSSCEEEEECHHHHTTBTTTSS--
T ss_pred             HHHHHHHHHHHH--cCCEEEEEcchhceeCCcchhhHHhCCCCCeeee--cchhcCCcceeeeeecHHHHHhhccCCC--
Confidence              9999999999  9999999999983211  11  111234677655  5999775568999999998776653110  


Q ss_pred             cccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCC
Q 015729          230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFS  305 (401)
Q Consensus       230 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~  305 (401)
                      .+           .+  ..++.++..+++..++++.+.++   +..++..++.+++++.|+++    ++.....    ..
T Consensus       298 ~~-----------~~--~t~~~~~~~~aa~~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~  357 (434)
T 2epj_A          298 VF-----------NA--GTFNAHPITMAAGLATLKALEEE---PVYSVSREAAKALEEAASEVLDRTGLPYTIN----RV  357 (434)
T ss_dssp             BC-----------CC--CTTTTCHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHHTCCEEEE----EE
T ss_pred             cc-----------cC--CCCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE----Ee
Confidence            00           01  13346677778888888877653   35677778888888888764    4432111    13


Q ss_pred             ceeEEEEcCCC-------------CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          306 DTVTAVIVPSH-------------INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       306 ~~~~~~~~~~~-------------~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      +.++++.+++.             .+..++.+.|.++ ||.+.++..    ..+|++  ..++++|+++++++|++++++
T Consensus       358 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~----~~~~~~--~~~t~e~i~~~l~~l~~~l~~  430 (434)
T 2epj_A          358 ESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRR-GVFIAPSNL----EAVFTG--LPHQGEALEIAVEGLRSSLKT  430 (434)
T ss_dssp             TTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHT-TEECCSSTT----SCEECC--TTCSHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHC-CeEEeccCC----CcEEEe--ccCCHHHHHHHHHHHHHHHHH
Confidence            45777887541             1245788888866 999987642    246664  457999999999999999876


Q ss_pred             c
Q 015729          373 V  373 (401)
Q Consensus       373 ~  373 (401)
                      +
T Consensus       431 ~  431 (434)
T 2epj_A          431 V  431 (434)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.91  E-value=1.7e-23  Score=199.91  Aligned_cols=284  Identities=15%  Similarity=0.099  Sum_probs=193.6

Q ss_pred             HHHHHHHccCcCC------CCCcc-HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEc-CC
Q 015729           22 DQVIRAMNRNNED------YRSPA-VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFL-IG   93 (401)
Q Consensus        22 ~~v~~a~~~~~~~------~~~~~-~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~-~~   93 (401)
                      ++|++++.+....      ..++. ......++++.+++++|.+....-++.+||++|+..++.+++++||+|+++. +.
T Consensus        38 ~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~  117 (431)
T 3ht4_A           38 FRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKP  117 (431)
T ss_dssp             HHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSC
T ss_pred             HHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence            5677777663211      11111 2245778999999999987532111245889999999999999999999998 66


Q ss_pred             cchHHH-H-------HHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEe-cCCCccc---ccchHHHHH
Q 015729           94 QFSLLW-I-------DQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVH-NETATGV---TNNLSKVRK  161 (401)
Q Consensus        94 ~~~~~~-~-------~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~-~~n~tG~---~~~l~~i~~  161 (401)
                      |.+... .       ..++..|++++.++.++++.+|++++++++++    ++++|++++ ++||+|.   ..++++|.+
T Consensus       118 y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~----~tk~V~i~~sp~np~~~~~~~~~l~~i~~  193 (431)
T 3ht4_A          118 YDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHS----NTKMIGIQRSKGYATRPSFTISQIKEMIA  193 (431)
T ss_dssp             CTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCT----TEEEEEEECSCTTSSSCCCCHHHHHHHHH
T ss_pred             chhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCC----CCeEEEEECCCCCCCCCcCCHHHHHHHHH
Confidence            655431 1       22345799999999988888999999999973    679999996 5555554   557888999


Q ss_pred             HhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccC---CCcceEEEecHHHHHHhccCCCCccccchHHHH
Q 015729          162 LLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSL---PTGMGIVCASPKALEASKTAKSVRVFFDWKDYI  238 (401)
Q Consensus       162 l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g---~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (401)
                      +|+++++|+++|+|++|+.+....+....++|++++|.+|+++|   ++| |++++++++++.+........        
T Consensus       194 la~~~~~~~~livDea~~~~~~~~~~~~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~l~~~~~~~~--------  264 (431)
T 3ht4_A          194 FVKEIKPDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACAYRLTSPG--------  264 (431)
T ss_dssp             HHHHHCTTCEEEEECTTCTTSSSCCGGGTTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHHHHHHHSCTT--------
T ss_pred             HHHhhCCCCEEEEeCCChhhccCCCccccCCeEEEcCccccCCCCCCCce-EEEEecHHHHHHHHHHhccCC--------
Confidence            99886689999999999987654444556799999999999876   456 999999998877753211000        


Q ss_pred             HHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCC
Q 015729          239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN  318 (401)
Q Consensus       239 ~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  318 (401)
                          .|.....+...  ...+...++.     .....++..++++++.+.|+++|+++.+.....++..++.+.+++...
T Consensus       265 ----~g~~~~~~~~~--~~~~~~~l~~-----~~~~~~~~~~~a~~l~~~L~~~g~~v~p~~~~~~~~li~~i~l~~~~~  333 (431)
T 3ht4_A          265 ----IGAEAGASLYS--LQEMYQGFFL-----APHVAGQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDKDR  333 (431)
T ss_dssp             ----TTTSCSCCCSC--SHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTCCEESCTTSCCSSSCCEEECCCHHH
T ss_pred             ----cccccCccHHH--HHHHHhHhhh-----HHHHHHHHHHHHHHHHHHHHhCcCEecCCCCCCCccEEEEEEeCCHHH
Confidence                01100111111  1122223322     245778888999999999999988774433333455577788854334


Q ss_pred             HHHHHHHHHhh
Q 015729          319 SSEIVRRAWQR  329 (401)
Q Consensus       319 ~~~l~~~L~~~  329 (401)
                      ..++++.|.+.
T Consensus       334 ~~~~~~~l~~~  344 (431)
T 3ht4_A          334 MIAFCQAIQYA  344 (431)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            55777887754

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.91  E-value=6.1e-23  Score=198.64  Aligned_cols=311  Identities=15%  Similarity=0.062  Sum_probs=198.2

Q ss_pred             ChHHHHHHHccCcCCCC-CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc---cCCCCCeEEEEcCCcc
Q 015729           20 IPDQVIRAMNRNNEDYR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN---TLSPGDRIISFLIGQF   95 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~---~~~~gd~vl~~~~~~~   95 (401)
                      .++.+++++.+...... .....+...++.+.+++.++ . .+++++++||++|++.++..   +.+ +++|++.+++|+
T Consensus        74 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~-~~~v~~~~gg~eA~~~al~~ar~~~~-~~~vi~~~~~yh  150 (453)
T 2cy8_A           74 GHPRVNAAIAEALSHGVQYAASHPLEVRWAERIVAAFP-S-IRKLRFTGSGTETTLLALRVARAFTG-RRMILRFEGHYH  150 (453)
T ss_dssp             TCHHHHHHHHHHHTTTCSSCSSCHHHHHHHHHHHHHCT-T-CSEEEEESCHHHHHHHHHHHHHHHHC-CCEEEEECC---
T ss_pred             CCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhCC-C-CCEEEEeCCHHHHHHHHHHHHHHhhC-CCEEEEEcCCcC
Confidence            56777777776443211 11234566778888887775 3 34699999999999998876   444 478999988887


Q ss_pred             hHHHHHHH---------HHcCC------cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc----h
Q 015729           96 SLLWIDQQ---------QRLNF------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----L  156 (401)
Q Consensus        96 ~~~~~~~~---------~~~g~------~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l  156 (401)
                      +.......         ...|+      .+..++.     .|++++++++++.. +++++|+++++++++|.+.+    +
T Consensus       151 g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~-~~~~~vi~ep~~~~tG~~~~~~~~l  224 (453)
T 2cy8_A          151 GWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-----DDIEGMREVFANHG-SDIAAFIAEPVGSHFGVTPVSDSFL  224 (453)
T ss_dssp             -------------------------CGGGEEEECT-----TCHHHHHHHHHHHG-GGEEEEEECSSEHHHHTEECCHHHH
T ss_pred             CCchhhHhhcCCccCCCcCCCCCccccCceeecCC-----CCHHHHHHHHHhcC-CCEEEEEECCCCCCCCCcCCCHHHH
Confidence            65421111         01233      2333432     28999999997532 25678887777788999887    9


Q ss_pred             HHHHHHhhhcCCCcEEEEecccccCcc--e--eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCcccc
Q 015729          157 SKVRKLLDEYRHPALFLVDGVSSICAI--D--FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF  232 (401)
Q Consensus       157 ~~i~~l~~~~~~~~~li~D~a~~~~~~--~--~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~  232 (401)
                      ++|.++|++  +|+++|+|++|+....  .  .+.....+|+++  .+|+++++.++|++++++++++.+.......   
T Consensus       225 ~~l~~l~~~--~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~s--~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~---  297 (453)
T 2cy8_A          225 REGAELARQ--YGALFILDEVISGFRVGNHGMQALLDVQPDLTC--LAKASAGGLPGGILGGREDVMGVLSRGSDRK---  297 (453)
T ss_dssp             HHHHHHHHH--TTCEEEEECTTTTTTTCTTHHHHHHTCCCSEEE--EEGGGGTTSSCEEEEECHHHHTTSSSCC------
T ss_pred             HHHHHHHHH--cCCEEEEecCccccccCchhhhHHhCCCCcEEE--EChhhhCCcceEEEechHHHHHHhccccCCC---
Confidence            999999999  9999999999983211  0  111123467764  4599986667899999999877665410000   


Q ss_pred             chHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHH-HHHhcHHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCCce
Q 015729          233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL-IFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFSDT  307 (401)
Q Consensus       233 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~-~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~  307 (401)
                             .+ .+  ..++.++..+++..++++. + .+   ...++..++.+++++.|+++    ++.....    ..+.
T Consensus       298 -------~~-~~--~t~~~n~~~~aa~~aal~~~~-~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~g~  359 (453)
T 2cy8_A          298 -------VL-HQ--GTFTGNPITAAAAIAAIDTIL-ED---DVCAKINDLGQFAREAMNHLFARKGLNWLAY----GRFS  359 (453)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHH-HT---THHHHHHHHHHHHHHHHHHHHHHTTCCEEEE----CCTT
T ss_pred             -------ce-eC--CCCCCCHHHHHHHHHHHHHHh-hh---hHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE----Eeee
Confidence                   00 01  1334667777788888887 6 43   35677778888888888764    3322111    2345


Q ss_pred             eEEEEcCC-----C--------------CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          308 VTAVIVPS-----H--------------INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       308 ~~~~~~~~-----~--------------~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      ++++.+++     .              .+..++.+.|.++ ||.+.++      +.+|++  ..++++|+++++++|++
T Consensus       360 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gv~v~~~------~~~~l~--~~~t~~~i~~~l~~l~~  430 (453)
T 2cy8_A          360 GFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILE-GVDIGGR------GSVFLS--AQHEREHVEHLVTTFDR  430 (453)
T ss_dssp             EEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHT-TEECBTT------TEEECC--TTCCHHHHHHHHHHHHH
T ss_pred             EEEEEEeccccccccccccccccccccHHHHHHHHHHHHHC-CeEEeCC------CCEEee--ccCCHHHHHHHHHHHHH
Confidence            77888853     1              1145788888876 9998532      236664  45799999999999999


Q ss_pred             HHHhc
Q 015729          369 ILKDV  373 (401)
Q Consensus       369 ~l~~~  373 (401)
                      +++++
T Consensus       431 ~l~~~  435 (453)
T 2cy8_A          431 VLDRL  435 (453)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88754

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.91  E-value=8.6e-24  Score=202.65  Aligned_cols=283  Identities=8%  Similarity=-0.021  Sum_probs=196.6

Q ss_pred             HHHHHHHHHHHhcC-----CCCceEEecCChhHHHHHHHhcc--------CCCCCeEEEEcCCcchHHHHHHHHHcCCcE
Q 015729           44 TKTLLEDIKKIFKT-----TSGTPFLIPTTGTGAWESALTNT--------LSPGDRIISFLIGQFSLLWIDQQQRLNFNV  110 (401)
Q Consensus        44 ~~~l~~~la~~~g~-----~~~~~i~~~~g~t~a~~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~  110 (401)
                      ..++++.++++++.     -.++++++++|+++|+..++.++        +++||+|+++.|.|.++.  ..++..|+++
T Consensus       102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~--~~~~~~g~~~  179 (427)
T 2hox_A          102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFR--EQTKYFDKKG  179 (427)
T ss_dssp             CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHH--HHHHHSCBTT
T ss_pred             hHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHH--HHHHHcCCee
Confidence            56888888888862     13356999999999999999998        899999999999876543  5567788887


Q ss_pred             EEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcce-eccCc
Q 015729          111 DVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID-FRMDE  189 (401)
Q Consensus       111 ~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~-~~~~~  189 (401)
                      +..      .+|++++++++++    +++++++++|+||||.+++ +    ++++    +..+.|+++...... .... 
T Consensus       180 ~~~------~~d~~~l~~~~~~----~~k~v~l~~p~NPtG~~~~-~----~l~~----~~~i~d~~~~~~~~s~~~~~-  239 (427)
T 2hox_A          180 YVW------AGNAANYVNVSNP----EQYIEMVTSPNNPEGLLRH-A----VIKG----CKSIYDMVYYWPHYTPIKYK-  239 (427)
T ss_dssp             EEE------EEEGGGGTTCSCG----GGEEEEEESSCTTTCCCCC-C----SSTT----CEEEEECTTCSTTTSCCCSC-
T ss_pred             eee------cCCHHHHHHhhcC----CceEEEEcCCCCCcccccH-H----HHcC----CCEEEeecccCCCCCccccC-
Confidence            643      3578888877753    5699999999999999999 4    3333    467888775421111 1222 


Q ss_pred             ccceEEEecCCCcccCCCc--ceEEEe-cHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHH
Q 015729          190 WGIDVALTGSQKALSLPTG--MGIVCA-SPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLI  266 (401)
Q Consensus       190 ~~~di~~~s~~K~l~g~~g--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~  266 (401)
                      .+.+++++|.||.+ +.+|  +|++++ ++++.+.+....            ...      ..+.+.....++..+++..
T Consensus       240 ~~~~i~~~S~SK~~-g~~G~RiG~~~~~~~~l~~~l~~~~------------~~~------~~~~~~~~q~a~~~~L~~~  300 (427)
T 2hox_A          240 ADEDILLFTMSKFT-GHSGSRFGWALIKDESVYNNLLNYM------------TKN------TEGTPRETQLRSLKVLKEV  300 (427)
T ss_dssp             BCCSEEEEEHHHHT-SCGGGCCEEEEECCHHHHHHHHHHH------------HHH------TSSCCHHHHHHHHHHHHHH
T ss_pred             CCceEEEEeChhcC-CCCCceEEEEEECCHHHHHHHHHHH------------Hhc------CCCCCHHHHHHHHHHhhcc
Confidence            46789999999988 4555  799999 588877665321            000      1124444334444455432


Q ss_pred             HH----------hcHHHHHHHHHHHHHHHHHHHHHc-CCcc--cc-CCC-------ccCCceeEEEEcCCCCCHHHHHHH
Q 015729          267 FE----------EGLENVIERHRRLGKATRLAVEAW-GLKN--CT-QKE-------EWFSDTVTAVIVPSHINSSEIVRR  325 (401)
Q Consensus       267 ~~----------~g~~~~~~~~~~~~~~l~~~L~~~-g~~~--~~-~~~-------~~~~~~~~~~~~~~~~~~~~l~~~  325 (401)
                      .+          ..+++.+++++++.+++.+.|++. |+.+  .. +..       ....+.++++.++.  +..+++..
T Consensus       301 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~--~~~~~~~~  378 (427)
T 2hox_A          301 VAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW--EEDKDCYQ  378 (427)
T ss_dssp             HHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS--GGGCSHHH
T ss_pred             hhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCC--cHHHHHHH
Confidence            11          124567788888999999999886 7654  11 110       01235678888854  45567777


Q ss_pred             HHhhCCeEEccCCCCC-CCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          326 AWQRYNLSLGLGLNKV-AGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       326 L~~~~~i~v~~g~~~~-~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      |.++.||.+++|.... ..+++||++..  +++++++++++|+++++
T Consensus       379 ll~~~gI~v~pg~~f~~~~~~~Ris~~~--~~e~l~~~l~~l~~~~~  423 (427)
T 2hox_A          379 TFQNGRINTQNGVGFEASSRYVRLSLIK--TQDDFDQLMYYLKDMVK  423 (427)
T ss_dssp             HHHHTTEECEEGGGGTSCTTEEEEECSS--CHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCEEEcCCCccCCCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence            7655699999985432 36789998875  89999999999998874

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.91  E-value=4e-23  Score=197.77  Aligned_cols=304  Identities=11%  Similarity=-0.022  Sum_probs=194.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEE-eCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVV-ESDW  117 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v-~~~~  117 (401)
                      .+...++++.+++++|.+.   .+++++|++|+..++.+++++||+|+++.++|++..  +...++..|++++.+ +.+ 
T Consensus        57 ~~~~~~l~~~la~~~g~~~---~v~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-  132 (421)
T 2ctz_A           57 NPTVDVLEKRLAALEGGKA---ALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE-  132 (421)
T ss_dssp             CHHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC-
T ss_pred             ChHHHHHHHHHHHHhCCCc---eEEecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCC-
Confidence            3567899999999999863   456666799999999888999999999999988875  323357789999888 654 


Q ss_pred             CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEeccc-ccCcceeccCcccceEEE
Q 015729          118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS-SICAIDFRMDEWGIDVAL  196 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~-~~~~~~~~~~~~~~di~~  196 (401)
                          |++++++++++    ++++|++++++||+|.+.|+++|.++|++  +|+++|+|++| +.+.. .+....++|+++
T Consensus       133 ----d~~~l~~~i~~----~~~~v~~~~~~n~~G~~~~l~~i~~~a~~--~g~~livD~~~~~~g~~-~~~~~~~~Di~~  201 (421)
T 2ctz_A          133 ----RPEEFLALTDE----KTRAWWVESIGNPALNIPDLEALAQAARE--KGVALIVDNTFGMGGYL-LRPLAWGAALVT  201 (421)
T ss_dssp             ----CHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHH--HTCEEEEECGGGGGGTS-CCGGGGTCSEEE
T ss_pred             ----CHHHHHHhhcc----CCeEEEEECCCCCCCcccCHHHHHHHHHH--cCCEEEEECCccccccc-CCccccCCeEEE
Confidence                79999999874    67999999999999999999999999999  99999999999 76632 222345799999


Q ss_pred             ecCCCcccCCC-cceEEEec-H--HH----HHHhccCCCCccccc---------hHHHHHHhhcCCCCCCCCcHHHHHHH
Q 015729          197 TGSQKALSLPT-GMGIVCAS-P--KA----LEASKTAKSVRVFFD---------WKDYIKFYNLGTFWPYTPSIQLLYGL  259 (401)
Q Consensus       197 ~s~~K~l~g~~-g~G~l~~~-~--~~----~~~~~~~~~~~~~~~---------~~~~~~~~~~g~~~~~~~~~~~~~a~  259 (401)
                      +|.||+++++. ++|.+++. +  ++    .+.+.+.........         +.. ..+++.-..+....+...++..
T Consensus       202 ~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~-~~r~~~~~~~g~~~~~~~a~~~  280 (421)
T 2ctz_A          202 HSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIV-KARVDGLRDQGQALGPFEAWVV  280 (421)
T ss_dssp             EETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHH-HHHHTHHHHHCCCCCHHHHHHH
T ss_pred             ECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHH-HHHHHHHHhcCCCCCHHHHHHH
Confidence            99999997644 35655553 1  11    222322110000000         000 0111100001113444433333


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCcccc-CC-Cc------------cCCceeEEEEcCCC-CCHHHHH
Q 015729          260 RAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCT-QK-EE------------WFSDTVTAVIVPSH-INSSEIV  323 (401)
Q Consensus       260 ~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~-~~------------~~~~~~~~~~~~~~-~~~~~l~  323 (401)
                      ...++.     +....++..++++++.+.|.+. ++.... +. ..            ...+.++.|.++.. .+...+.
T Consensus       281 ~~~l~~-----l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~~~~  355 (421)
T 2ctz_A          281 LLGMET-----LSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFI  355 (421)
T ss_dssp             HHHHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHH
T ss_pred             HcCcch-----HHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCCHHHHHHHH
Confidence            333332     3445666678999999999886 665431 11 00            13456888888431 1122233


Q ss_pred             HHHHhhCCeEEccCCC------C-----------------CCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          324 RRAWQRYNLSLGLGLN------K-----------------VAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       324 ~~L~~~~~i~v~~g~~------~-----------------~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      ..|. .+++.++.|..      +                 ...+.+|+|+.    .+|+|.+++.+++++
T Consensus       356 ~~l~-~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g----~e~~~~li~~l~~al  420 (421)
T 2ctz_A          356 SRLK-LISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVG----LEHVEDLKAELKEAL  420 (421)
T ss_dssp             HTCS-SSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECC----SSCHHHHHHHHHHHT
T ss_pred             HhCC-cceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeC----CCCHHHHHHHHHHHh
Confidence            3221 12334443311      0                 12468999864    468888888887765

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.90  E-value=1.5e-22  Score=192.03  Aligned_cols=213  Identities=13%  Similarity=0.064  Sum_probs=156.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHH-HHHcCCcEEEEeCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQ-QQRLNFNVDVVESDW  117 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~-~~~~g~~~~~v~~~~  117 (401)
                      .+...++++++++++|.+.   .++++||++|+.. +.+++++||+|++..+.|++..  +... ....|++++.++.+ 
T Consensus        66 ~p~~~~l~~~la~l~g~~~---~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-  140 (400)
T 3nmy_A           66 NPTRFAYERCVAALEGGTR---AFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLT-  140 (400)
T ss_dssp             CHHHHHHHHHHHHHHTCSE---EEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTT-
T ss_pred             CHHHHHHHHHHHHHhCCCC---EEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCC-
Confidence            4567899999999998763   6777888999998 5678999999999999887654  3333 56679999999865 


Q ss_pred             CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEe
Q 015729          118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT  197 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~  197 (401)
                          |++++++++++    ++++|++++++||+|.+.|+++|.++|++  +|+++|+|++++.+... .....++|+++.
T Consensus       141 ----d~~~l~~~i~~----~~~~v~~e~~~np~G~~~~l~~i~~la~~--~g~~livDe~~~~~~~~-~~~~~g~div~~  209 (400)
T 3nmy_A          141 ----DPAAFKAAIRA----DTKMVWIETPTNPMLKLVDIAAIAVIARK--HGLLTVVDNTFASPMLQ-RPLSLGADLVVH  209 (400)
T ss_dssp             ----SHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHH--TTCEEEEECTTTHHHHC-CGGGGTCSEEEE
T ss_pred             ----CHHHHHHHhcc----CCCEEEEECCCCCCCeeecHHHHHHHHHH--cCCEEEEECCCcccccC-ChhhcCCcEEEe
Confidence                89999999874    57999999999999999999999999999  99999999998754322 223457999999


Q ss_pred             cCCCcccCCC-cc-e-EEE-ecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHH
Q 015729          198 GSQKALSLPT-GM-G-IVC-ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLEN  273 (401)
Q Consensus       198 s~~K~l~g~~-g~-G-~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~  273 (401)
                      |.+|+++|+. .+ | +++ .++++.+++...            ...+  |    .+.++...+.+...++     .++.
T Consensus       210 S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~------------~~~~--g----~~~~~~~a~~~l~~l~-----~l~~  266 (400)
T 3nmy_A          210 SATKYLNGHSDMVGGIAVVGDNAELAEQMAFL------------QNSI--G----GVQGPFDSFLALRGLK-----TLPL  266 (400)
T ss_dssp             ETTTTTTCSSSCCCEEEEECSCHHHHHHHHHH------------HHHH--C----CBCCHHHHHHHHHHHT-----THHH
T ss_pred             cCccccCCCCCcceeEEEEeCCHHHHHHHHHH------------HHhc--C----CCCCHHHHHHHHHhHh-----HHHH
Confidence            9999997652 23 5 344 456665555321            0111  1    2344433333222322     2456


Q ss_pred             HHHHHHHHHHHHHHHHHHc
Q 015729          274 VIERHRRLGKATRLAVEAW  292 (401)
Q Consensus       274 ~~~~~~~~~~~l~~~L~~~  292 (401)
                      ..++..++++.+.+.|++.
T Consensus       267 r~~~~~~~a~~l~~~L~~~  285 (400)
T 3nmy_A          267 RMRAHCENALALAQWLETH  285 (400)
T ss_dssp             HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHcC
Confidence            7778888999999999874

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.90  E-value=7.2e-22  Score=197.33  Aligned_cols=300  Identities=11%  Similarity=0.056  Sum_probs=211.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC-C
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-E  119 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~  119 (401)
                      ...+.++++.+++++|.+.  .+++++|++.|+..++.+++++||+|++..++|.|..  ..+...|++++.++.+.+ .
T Consensus       194 ~g~i~eaE~~lA~~fGa~~--a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~--~~l~lsGa~pv~v~~~~~~~  269 (715)
T 3n75_A          194 SGPHKEAEQYIARVFNADR--SYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLT--HLMMMSDVTPIYFRPTRNAY  269 (715)
T ss_dssp             BTHHHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHH--HHHHHSCCEEEEECCCBCTT
T ss_pred             cHHHHHHHHHHHHHhCCCC--ceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHH--HHHHHcCCEEEEEecccccc
Confidence            3457899999999999976  2556666679999999999999999999999999876  346778999999986533 1


Q ss_pred             ----CC-----ChHHHHHHHhccCC-CCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcc--e---
Q 015729          120 ----GA-----KLDVLASKLAADTA-HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI--D---  184 (401)
Q Consensus       120 ----~~-----d~~~le~~~~~~~~-~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~--~---  184 (401)
                          .+     |++++++++++++. +++++++++++ |++|.+.|+++|.++|++  ++  +++|+||+.+..  +   
T Consensus       270 gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~--~~--livDEAH~~~~~f~~~~~  344 (715)
T 3n75_A          270 GILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDV--KS--IHFDSAWVPYTNFSPIYE  344 (715)
T ss_dssp             CCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCC--SE--EEEECTTCTTGGGSGGGT
T ss_pred             ccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCc--Cc--EEEccccccccccCCccc
Confidence                23     89999999986531 23458999988 999999999999999987  64  799999986531  1   


Q ss_pred             -eccCccc--ceEE---EecCCCcccCCCcceEEEecHHHH-HHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHH
Q 015729          185 -FRMDEWG--IDVA---LTGSQKALSLPTGMGIVCASPKAL-EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLY  257 (401)
Q Consensus       185 -~~~~~~~--~di~---~~s~~K~l~g~~g~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  257 (401)
                       ......+  +|++   +.|.||+++++.+.|++.++++.. .++            ......+     +..+++...++
T Consensus       345 ~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~------------~~~~~~~-----~STSpsy~~~A  407 (715)
T 3n75_A          345 GKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETF------------NEAYMMH-----TTTSPHYGIVA  407 (715)
T ss_dssp             TSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHH------------HHHHHHT-----SCSSCCHHHHH
T ss_pred             cccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHH------------HHHHHhh-----cCCCchHHHHH
Confidence             1111122  5654   899999998777779998876421 011            0111111     23468899999


Q ss_pred             HHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHc-C------CccccCCC-------------c------------cC
Q 015729          258 GLRAALDLIFE-EGLENVIERHRRLGKATRLAVEAW-G------LKNCTQKE-------------E------------WF  304 (401)
Q Consensus       258 a~~~al~~~~~-~g~~~~~~~~~~~~~~l~~~L~~~-g------~~~~~~~~-------------~------------~~  304 (401)
                      ++.+|++.+.. .| +..+++..++.+++++.|+++ +      ++++.++.             .            ..
T Consensus       408 sldaA~~~~~~~~g-~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~  486 (715)
T 3n75_A          408 STETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYL  486 (715)
T ss_dssp             HHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEE
T ss_pred             HHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccC
Confidence            99999998864 44 567899999999999999875 2      33333210             0            01


Q ss_pred             CceeEEEEcCC----------CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          305 SDTVTAVIVPS----------HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       305 ~~~~~~~~~~~----------~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .+.-+.+..+.          |+++..+.+.|.++ ||.+....    ...+-+-+....++++++++++++.+.-+.
T Consensus       487 Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~-~I~~E~~d----~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~  559 (715)
T 3n75_A          487 DPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEH-GIVVEKTG----PYNLLFLFSIGIDKTKALSLLRALTDFKRA  559 (715)
T ss_dssp             CTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHT-TCCCSEEE----TTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHC-CCEEEecC----CCcEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence            23344555542          56778999999654 88865332    223333244456899999999999876543

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.90  E-value=8.3e-23  Score=196.00  Aligned_cols=308  Identities=14%  Similarity=0.034  Sum_probs=205.2

Q ss_pred             ChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcc
Q 015729           20 IPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQF   95 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~   95 (401)
                      .++++++++.+....  +.+ ...+...++.+.++++++ . .+++++++||++|++.++..  .+.++++|++.+++|+
T Consensus        69 ~~p~v~~a~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yh  145 (424)
T 2e7u_A           69 AHPKVLARVRETLERGLTFG-APSPLEVALAKKVKRAYP-F-VDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYH  145 (424)
T ss_dssp             TCHHHHHHHHHHHHTCSCCS-SCCHHHHHHHHHHHHHCT-T-CCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCC
T ss_pred             CCHHHHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHHhCC-C-CCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcC
Confidence            567777777764432  222 234567789999999986 3 34599999999999998864  2444588999999888


Q ss_pred             hHHHHHHH------------HHcCC------cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc--
Q 015729           96 SLLWIDQQ------------QRLNF------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN--  155 (401)
Q Consensus        96 ~~~~~~~~------------~~~g~------~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~--  155 (401)
                      +.......            ...|+      ++..++.     .|++++++++++.. +++++|++++.++++|.+.+  
T Consensus       146 g~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~-~~~~~vi~ep~~~~~G~~~~~~  219 (424)
T 2e7u_A          146 GHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-----NDPEGLREVLKRRG-EEIAAIIFEPVVGNAGVLVPTE  219 (424)
T ss_dssp             CCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-----TCHHHHHHHHHHHG-GGEEEEEECSSBCTTSCBCCCH
T ss_pred             CCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-----CCHHHHHHHHHhCC-CCEEEEEEeCCCCCCCCcCCCH
Confidence            64321110            01122      3444543     28999999987421 24567777665666998887  


Q ss_pred             --hHHHHHHhhhcCCCcEEEEecccccCcc--ee--ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCc
Q 015729          156 --LSKVRKLLDEYRHPALFLVDGVSSICAI--DF--RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVR  229 (401)
Q Consensus       156 --l~~i~~l~~~~~~~~~li~D~a~~~~~~--~~--~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~  229 (401)
                        +++|.++ ++  +|+++|+|++|+....  .+  +.....+|++  |.+|+++++.++|++++++++.+.+.....  
T Consensus       220 ~~l~~l~~l-~~--~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~--  292 (424)
T 2e7u_A          220 DFLKALHEA-KA--YGVLLIADEVMTGFRLAFGGATELLGLKPDLV--TLGKILGGGLPAAAYAGRREIMEKVAPLGP--  292 (424)
T ss_dssp             HHHHHHHHG-GG--GTCEEEEECTTTTTTSSTTHHHHHHTCCCSEE--EECGGGGTTSSCEEEEECHHHHTTBTTTSS--
T ss_pred             HHHHHHHHH-HH--cCCEEEEecCccccccchhHHHHHhCCCcchh--hhhhhhhCCcceEEEEEcHHHHhhhcccCC--
Confidence              8999999 99  9999999999983211  11  1112246766  556999866678999999998877654110  


Q ss_pred             cccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCC
Q 015729          230 VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFS  305 (401)
Q Consensus       230 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~  305 (401)
                      .+           .+  .+++.++..+++..++++.+.+  .++..++..++.+++++.|+++    ++.....    ..
T Consensus       293 ~~-----------~~--~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~  353 (424)
T 2e7u_A          293 VY-----------QA--GTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVN----RV  353 (424)
T ss_dssp             BC-----------CC--CTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE----EE
T ss_pred             cc-----------cC--CCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEE----ee
Confidence            00           01  1334666777788888887765  1457788888888888888774    4422111    12


Q ss_pred             ceeEEEEcCCC-------------CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          306 DTVTAVIVPSH-------------INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       306 ~~~~~~~~~~~-------------~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      +.++++.+++.             .+..++.+.|.++ ||.+.++..    ..+|++  ..++++|+++++++|+++
T Consensus       354 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~----~~~~~~--~~~t~~~i~~~l~~l~~~  423 (424)
T 2e7u_A          354 GSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDR-GIYWPPSNF----EAAFLS--VAHREEDVEKTLEALRKA  423 (424)
T ss_dssp             TTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTT-TEECCSSSS----SCEECC--TTCCHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHC-CeEEeccCC----CceEee--ccCCHHHHHHHHHHHHHh
Confidence            35778888541             1245788888865 999987642    236664  457999999999999875

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.89  E-value=3.4e-21  Score=178.41  Aligned_cols=345  Identities=12%  Similarity=0.066  Sum_probs=225.6

Q ss_pred             cccccCCCcCChHHHHHHHccCcCCCCC--------cc----HHHHHHHHHHHHHHHhcCCCCceE--EecCChhHHHHH
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNEDYRS--------PA----VPALTKTLLEDIKKIFKTTSGTPF--LIPTTGTGAWES   75 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~~--------~~----~~~~~~~l~~~la~~~g~~~~~~i--~~~~g~t~a~~~   75 (401)
                      ...+++.=-.++++|++++.....+.+.        +.    .+.+..-+.++..++||.+..++-  +-..||+.|+.+
T Consensus        56 ~ieLIASEN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~a  135 (490)
T 3ou5_A           56 GLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLA  135 (490)
T ss_dssp             SEECCTTCCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHH
T ss_pred             CceEecCCCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHH
Confidence            3456666677889999999885543221        11    223344567788899999876531  456789999999


Q ss_pred             HHhccCCCCCeEEEEcCCcch---HHHHH---HHHHcCC--cEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEec
Q 015729           76 ALTNTLSPGDRIISFLIGQFS---LLWID---QQQRLNF--NVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHN  146 (401)
Q Consensus        76 ~~~~~~~~gd~vl~~~~~~~~---~~~~~---~~~~~g~--~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~  146 (401)
                      +..++++|||+|+..+..+-+   +.+..   .....|.  +.+...+++ ++.+|.|++++...+   .+||+|++-..
T Consensus       136 vy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~---~kPklIi~G~S  212 (490)
T 3ou5_A          136 VYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARL---FRPRLIIAGTS  212 (490)
T ss_dssp             HHHHHCC-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHH---HCCSEEEECCS
T ss_pred             HHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhh---cCCCeEEECCc
Confidence            999999999999988874333   32111   1111222  233333343 457999999999887   57899988765


Q ss_pred             CCCcccccchHHHHHHhhhcCCCcEEEEecccccCc-----ceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHH
Q 015729          147 ETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICA-----IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEA  221 (401)
Q Consensus       147 ~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~-----~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~  221 (401)
                      .+|  ...|.+++.++|++  .|.++++|.+|..|.     .+-.+.  .+|++++|.||+|.||.| |++.++++... 
T Consensus       213 aY~--r~id~~~~reIAd~--vGA~Lm~DmAHiaGLVA~g~~psP~~--~ADvVTtTTHKTLrGPrG-G~Il~~~~~~~-  284 (490)
T 3ou5_A          213 AYA--RLIDYARMREVCDE--VKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYRKGVKA-  284 (490)
T ss_dssp             SCC--SCCCHHHHHHHHHH--HTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSSTTCSCSC-EEEEEECSEEE-
T ss_pred             cCc--cccCHHHHHHHHhh--cccEEEechhhhhhhhcccccCCccc--cceEEeccccccccCCCc-eEEEecccccc-
Confidence            444  57799999999999  999999999997553     333333  489999999999998887 99988874211 


Q ss_pred             hccCCCCccccchHHHHH-HhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCC
Q 015729          222 SKTAKSVRVFFDWKDYIK-FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQK  300 (401)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  300 (401)
                      ...........++....+ ..-.|.  -++|....+++...++.......++...++..+|++.|.+.|.+.|+++....
T Consensus       285 ~~~k~~~~~~~~~~kkin~aVFPg~--qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~vvsGg  362 (490)
T 3ou5_A          285 VDPKTGREIPYTFEDRINFAVFPSL--QGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGG  362 (490)
T ss_dssp             ECC--CCEEECCCHHHHHHHHTTTT--CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS
T ss_pred             ccccccchhHHHHHHHHHhhcCccc--cccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCeeecCC
Confidence            000000011111221111 111121  33477777777777777655555788999999999999999999999998632


Q ss_pred             CccCCceeEEEEc-CCCCCHHHHHHHHHhhCCeEEccCCC-----CCCCcEEEEeeccc----CCHHHHHHHHHHHHHHH
Q 015729          301 EEWFSDTVTAVIV-PSHINSSEIVRRAWQRYNLSLGLGLN-----KVAGKVFRIGHLGH----LNELQLLGCLAGVEMIL  370 (401)
Q Consensus       301 ~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~~~i~v~~g~~-----~~~~~~~Ri~~~~~----~~~~di~~~~~~i~~~l  370 (401)
                         ..+.++.+.+ +.+++..+..+.|. +.||.+....-     +.....+||++..-    ..++|++++.+.|.+++
T Consensus       363 ---TdnHlvLvDl~~~g~tG~~ae~~Le-~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l  438 (490)
T 3ou5_A          363 ---TDNHLVLVDLRPKGLDGARAERVLE-LVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGV  438 (490)
T ss_dssp             ---CSSSEEEEECGGGTCCHHHHHHHHH-HTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             ---CCceEEEEeccccCCCHHHHHHHHH-HcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence               3445666776 45677778777775 55998763321     22234599998652    35899999999998877


Q ss_pred             H
Q 015729          371 K  371 (401)
Q Consensus       371 ~  371 (401)
                      +
T Consensus       439 ~  439 (490)
T 3ou5_A          439 N  439 (490)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.89  E-value=3.8e-21  Score=182.61  Aligned_cols=329  Identities=11%  Similarity=-0.033  Sum_probs=204.4

Q ss_pred             cccccCCCcCChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHh-cCC--CC-ceEEecCChhHHHHHHH----hc
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIF-KTT--SG-TPFLIPTTGTGAWESAL----TN   79 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~-g~~--~~-~~i~~~~g~t~a~~~~~----~~   79 (401)
                      +|.+--|.+++.+.|.+|.......  ...|.+.....++++.+++++ |..  .. ...+.+.|+|.|+..++    ..
T Consensus        53 ~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~  132 (420)
T 4h51_A           53 AYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRV  132 (420)
T ss_dssp             CCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTT
T ss_pred             cccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHh
Confidence            3444445667778888876553211  123444566778888888875 322  11 22344788888876554    34


Q ss_pred             cCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEE-EeC--CCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc-
Q 015729           80 TLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDV-VES--DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-  155 (401)
Q Consensus        80 ~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~-v~~--~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~-  155 (401)
                      +..|||+|++++|.|.++.  ...+..|.+.+. .+.  +....+|.+.+.+.+...+ +++++++++.++||||..++ 
T Consensus       133 ~~~pgd~V~ip~P~w~~y~--~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~-~~~~vll~~~p~NPtG~~~~~  209 (420)
T 4h51_A          133 FDAETTPIYLSDPTWPNHY--GVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAP-DGSVFILHQCAHNPTGVDPSQ  209 (420)
T ss_dssp             SCTTTSCEEEEESCCTHHH--HHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSC-SSCEEEEESSSCTTTCCCCCH
T ss_pred             cCCCCCEEEEecCCchhHH--HHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccC-CCcEEEEeCCCCCCCCCCCCH
Confidence            5689999999999877664  567778887543 333  2234578888888887654 56778888899999999996 


Q ss_pred             --hHHHHHHhhhcCCCcEEEEecccccCcce---ec-------cCcccceEEEecCCCcccCCCc--ceEEEecHHHHHH
Q 015729          156 --LSKVRKLLDEYRHPALFLVDGVSSICAID---FR-------MDEWGIDVALTGSQKALSLPTG--MGIVCASPKALEA  221 (401)
Q Consensus       156 --l~~i~~l~~~~~~~~~li~D~a~~~~~~~---~~-------~~~~~~di~~~s~~K~l~g~~g--~G~l~~~~~~~~~  221 (401)
                        +++|.++|++  +++++++|++|......   .+       .+.....+++.|.+|.++ .+|  +|++++..+..+.
T Consensus       210 ~~~~~i~~~~~~--~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~RvG~~~~~~~~~~~  286 (420)
T 4h51_A          210 EQWNEIASLMLA--KHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMG-LYSERAGTLSLLLKDKTK  286 (420)
T ss_dssp             HHHHHHHHHHHH--HTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC-CGGGCEEEEEEECSCHHH
T ss_pred             HHHHHHHHHHHh--cCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccc-cccCceEEEEecccCHHH
Confidence              5678889999  99999999998643211   11       112234578889999884 544  6988876543332


Q ss_pred             hccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHH--HH---HhcHHHHHHHHHHHHHHHHHHHHHcCCc-
Q 015729          222 SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL--IF---EEGLENVIERHRRLGKATRLAVEAWGLK-  295 (401)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~--~~---~~g~~~~~~~~~~~~~~l~~~L~~~g~~-  295 (401)
                      ....         ...........  ..+++......+...+..  +.   +..++..++++.++++.+.+.|+++|.. 
T Consensus       287 ~~~~---------~~~l~~~~r~~--~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~  355 (420)
T 4h51_A          287 RADV---------KSVMDSLIREE--YTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPG  355 (420)
T ss_dssp             HHHH---------HHHHHHHHHTT--TSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHH---------HHHHHHhhhcc--cCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            2110         01111111111  223555443333333321  11   1225677888889999999999987533 


Q ss_pred             ---cccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          296 ---NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       296 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                         ...+    ..+.+.+.    +++.++ ++.|. +++|++.++      +  ||++.+ ++++.|++++++|.+++++
T Consensus       356 ~~~~i~~----q~GmF~~~----gls~e~-v~~L~-e~~Vy~~~~------g--Ris~Ag-l~~~ni~~~a~aI~~vvr~  416 (420)
T 4h51_A          356 SWEHVIN----QIGMFSFL----GLSKAQ-CEYCQ-NHNIFITVS------G--RANMAG-LTHETALMLAQTINDAVRN  416 (420)
T ss_dssp             CCTHHHH----CCSSEEEC----CCCHHH-HHHHH-HTTEECCTT------C--EEEGGG-CCHHHHHHHHHHHHHHHC-
T ss_pred             CCCeecC----CCceEEec----CcCHHH-HHHHH-hCCEEEcCC------C--EEEecc-CCHHHHHHHHHHHHHHHHH
Confidence               2222    24444433    334444 46675 459987643      2  997665 8999999999999999987


Q ss_pred             cC
Q 015729          373 VG  374 (401)
Q Consensus       373 ~~  374 (401)
                      +.
T Consensus       417 i~  418 (420)
T 4h51_A          417 VN  418 (420)
T ss_dssp             --
T ss_pred             hh
Confidence            53

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.89  E-value=1.3e-21  Score=189.94  Aligned_cols=329  Identities=15%  Similarity=0.155  Sum_probs=207.4

Q ss_pred             CCCCcccccCCC------cCChHHHHHHHccCcC----CCC---C-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhH
Q 015729            6 APGKNHLFVPGP------VHIPDQVIRAMNRNNE----DYR---S-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG   71 (401)
Q Consensus         6 ~~~~~~~~~~~p------~~~~~~v~~a~~~~~~----~~~---~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~   71 (401)
                      .-|+.|++..+.      ...+|++++++.+...    .+.   + ....++..++.+.++++++.. .+.++|++||++
T Consensus        60 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~-~~~v~f~~sGse  138 (472)
T 1ohv_A           60 VDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKG-MSQLITMACGSC  138 (472)
T ss_dssp             TTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTT-CCEEEEESSHHH
T ss_pred             CCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhCCCC-cCEEEEeCCchh
Confidence            345556655321      2357888888877532    111   1 111233334444444454333 345999999999


Q ss_pred             HHHHHHhccC-------------------------CCC---CeEEEEcCCcchHHHHHHHH-------HcCCcE---EEE
Q 015729           72 AWESALTNTL-------------------------SPG---DRIISFLIGQFSLLWIDQQQ-------RLNFNV---DVV  113 (401)
Q Consensus        72 a~~~~~~~~~-------------------------~~g---d~vl~~~~~~~~~~~~~~~~-------~~g~~~---~~v  113 (401)
                      |++.++....                         ++|   ++|++.+++||+.....+..       ..+...   ..+
T Consensus       139 A~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~  218 (472)
T 1ohv_A          139 SNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIA  218 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEE
T ss_pred             HHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCccc
Confidence            9999986542                         145   89999999888865322111       112211   122


Q ss_pred             eCCC-CC-------------CCChHHHHHHHhccCC--CCceEEEEEecCCCcccccc----hHHHHHHhhhcCCCcEEE
Q 015729          114 ESDW-GE-------------GAKLDVLASKLAADTA--HTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFL  173 (401)
Q Consensus       114 ~~~~-~~-------------~~d~~~le~~~~~~~~--~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li  173 (401)
                      +.+. ..             ..|+++|++++++...  .++++|++.+++|++|.+.+    +++|.++|++  +|+++|
T Consensus       219 ~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~--~g~lli  296 (472)
T 1ohv_A          219 PFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRK--HGCAFL  296 (472)
T ss_dssp             CCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHH--TTCEEE
T ss_pred             CCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHH--hCCEEE
Confidence            3221 00             1257899998875210  15789999888899998877    9999999999  999999


Q ss_pred             Eecccc-cCcc--eeccCccc----ceEEEecCCCc-ccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCC
Q 015729          174 VDGVSS-ICAI--DFRMDEWG----IDVALTGSQKA-LSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGT  245 (401)
Q Consensus       174 ~D~a~~-~~~~--~~~~~~~~----~di~~~s~~K~-l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  245 (401)
                      +|++|+ +|..  .+..+..+    +|++++|  |+ ++   | |+++ ++++ ..+...                ..+ 
T Consensus       297 ~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~s--K~~l~---G-G~~~-~~~~-~~~~~~----------------~~~-  351 (472)
T 1ohv_A          297 VDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKMMT---G-GFFH-KEEF-RPNAPY----------------RIF-  351 (472)
T ss_dssp             EECTTTTTTTTSSSSGGGGGCCSSCCSEEEEC--GGGSS---E-EEEE-CGGG-SCSSSS----------------SSC-
T ss_pred             EeCcccCCCCCCCchhccccCCCCCCCEEEEc--ccccc---C-CccC-chhh-cccccc----------------ccc-
Confidence            999998 3322  12333334    7887665  98 43   2 6665 5443 111110                001 


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCcc-ccCCCccCCceeEEEEcCCCCCHHHH
Q 015729          246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKN-CTQKEEWFSDTVTAVIVPSHINSSEI  322 (401)
Q Consensus       246 ~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l  322 (401)
                       ..++.++..++++.++++.+.+++   ..++..++.+++++.|+++  +++. +....  ..+.++++.+++..+..++
T Consensus       352 -~T~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~--~~g~~~~~~~~~~~~~~~~  425 (472)
T 1ohv_A          352 -NTWLGDPSKNLLLAEVINIIKRED---LLSNAAHAGKVLLTGLLDLQARYPQFISRVR--GRGTFCSFDTPDESIRNKL  425 (472)
T ss_dssp             -CSSSSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTTCEEEE--EETTEEEEECSSHHHHHHH
T ss_pred             -CccCccHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHhhCCCcEEeec--CCceEEEEEeCChhHHHHH
Confidence             123456667778888888876643   5678888888999888875  3431 11111  1245667777432235678


Q ss_pred             HHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          323 VRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       323 ~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ++.|.++ ||.+.++    ..+++||++...+|++|+++++++|+++++++
T Consensus       426 ~~~l~~~-Gv~~~~~----g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~  471 (472)
T 1ohv_A          426 ISIARNK-GVMLGGC----GDKSIRFRPTLVFRDHHAHLFLNIFSDILADF  471 (472)
T ss_dssp             HHHHHHT-TEECEEE----TTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHC-CeEEecC----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            8888876 9998764    24689998888899999999999999998754

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.88  E-value=2.9e-20  Score=178.09  Aligned_cols=324  Identities=13%  Similarity=0.056  Sum_probs=214.8

Q ss_pred             ChHHHHHHHccCcCC--CC--CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCC
Q 015729           20 IPDQVIRAMNRNNED--YR--SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIG   93 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~   93 (401)
                      -+|++.+++.++...  |.  .....+...++.++|.++...+..+.+.|+++|++|++.++.-  .....++|+....+
T Consensus        81 ~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~  160 (456)
T 4atq_A           81 SDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHA  160 (456)
T ss_dssp             TCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTC
T ss_pred             CCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecc
Confidence            456676666653321  11  1112344557888888888765555689999999999998843  33455789999999


Q ss_pred             cchHHHHHHHHHc------------CCcEEEEeCCCCC------CCChHHHHHHHhc----cCCCCceEEEEEecCCCcc
Q 015729           94 QFSLLWIDQQQRL------------NFNVDVVESDWGE------GAKLDVLASKLAA----DTAHTIKAICIVHNETATG  151 (401)
Q Consensus        94 ~~~~~~~~~~~~~------------g~~~~~v~~~~~~------~~d~~~le~~~~~----~~~~~~~~i~~~~~~n~tG  151 (401)
                      ||+.....+....            .-.+..+|.....      ..+.+.+++.++.    ...+++.+|++...+...|
T Consensus       161 yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG  240 (456)
T 4atq_A          161 YHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGG  240 (456)
T ss_dssp             CCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTT
T ss_pred             cCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCC
Confidence            9987633222110            1134555543211      1123333333321    1114688999999888889


Q ss_pred             cccc----hHHHHHHhhhcCCCcEEEEecccccCcc---eeccC--cccceEEEecCCCcccCCCcceEEEecHHHHHHh
Q 015729          152 VTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---DFRMD--EWGIDVALTGSQKALSLPTGMGIVCASPKALEAS  222 (401)
Q Consensus       152 ~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~~~~~--~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~  222 (401)
                      .+.+    ++++.++|++  +|+++|+||++.....   .+..+  ...+|+++++  |.++|+.++|.+.+++++.+.+
T Consensus       241 ~~~p~~~fl~~lr~lc~~--~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~g--K~lggg~P~~av~~~~~i~~~~  316 (456)
T 4atq_A          241 FIVPAEGFLPALSEWAKE--KGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMA--KGIAGGLPLSAITGRADLLDAV  316 (456)
T ss_dssp             CBCCCTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSCEEEEEEHHHHTTS
T ss_pred             ccccchhhhHHHHHHHhh--cCCceEecccccccCCccccccccccCCCCchhhhh--hcccCcCCceeeEecHHHHhcc
Confidence            8875    7899999999  9999999999875221   12222  2347999887  8888888899999999988776


Q ss_pred             ccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CC-----c
Q 015729          223 KTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GL-----K  295 (401)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~-----~  295 (401)
                      .+..                  +..+++.++..+++..++++.+.+++   +.++..+..+++.+.|+++  .+     +
T Consensus       317 ~~~~------------------~~~Tf~gnpla~aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~~~~  375 (456)
T 4atq_A          317 HPGG------------------LGGTYGGNPVACAAALAAIDTMEQHD---LNGRARHIEELALGKLRELAAELSAGGGS  375 (456)
T ss_dssp             CTTS------------------SCCSSSSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred             cccC------------------CCCCCCCChHHHHhhHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence            5431                  11244567788889999999988865   5566677777777777664  11     2


Q ss_pred             cccCCCccCCceeEEEEcCCCC----C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          296 NCTQKEEWFSDTVTAVIVPSHI----N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~----~---~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      ++.  +....+.++.+++.+..    +   ...+.+.|+++ |+.+.+...  .++.+||.+...+|++|+|+++++|++
T Consensus       376 ~v~--~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~-Gvl~~~~g~--~~~~irl~PpL~it~~~id~~l~~l~~  450 (456)
T 4atq_A          376 VVG--DIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKE-GVIILTCGT--YGNVIRLLPPLVISDELLIDGLEVLAA  450 (456)
T ss_dssp             CEE--EEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHT-TEECEEECT--TSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             ceE--EeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHC-CCEEEecCC--CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            221  11234567777763211    1   34677788877 988765422  267899998888999999999999999


Q ss_pred             HHHhc
Q 015729          369 ILKDV  373 (401)
Q Consensus       369 ~l~~~  373 (401)
                      +++..
T Consensus       451 al~a~  455 (456)
T 4atq_A          451 AIKAH  455 (456)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            99753

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.79  E-value=6e-24  Score=204.10  Aligned_cols=314  Identities=14%  Similarity=0.059  Sum_probs=207.9

Q ss_pred             ChHHHHHHHccCcCCCCC-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--CCCCCeEEEEcCCcch
Q 015729           20 IPDQVIRAMNRNNEDYRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFS   96 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~~~~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~~~gd~vl~~~~~~~~   96 (401)
                      .+|+|++++.+....... ..+.+...++.++|+++++ . .+.+++++||++|++.++...  +..+++|++.+.+||+
T Consensus       117 ~~p~V~~Av~~q~~~~~~~~~~~~~~~~Lae~L~~~~p-~-~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG  194 (465)
T 2yky_A          117 SHPVIRAAVERALAVGLNLSTQTENEALFAEAVCDRFP-S-IDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHG  194 (465)
Confidence            356777777775443211 1234667789999999985 2 234899999999999998653  3456899999998888


Q ss_pred             HHHHHHH--HHcCC--cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHhhhcCC
Q 015729           97 LLWIDQQ--QRLNF--NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRH  168 (401)
Q Consensus        97 ~~~~~~~--~~~g~--~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~  168 (401)
                      .....+.  ...|+  .+..++  .+   |++++++++++.. +++++|++..+++++|.+.+    +++|.++|++  +
T Consensus       195 ~~~~~~sg~~~~g~~~~~~~~~--~~---d~~~l~~~l~~~~-~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~--~  266 (465)
T 2yky_A          195 GLLNFASGHAPTNAPYHVVLGV--YN---DVEGTADLLKRHG-HDCAAILVEPMLGAGGCVPAERAFLDLLRAEASR--C  266 (465)
Confidence            6642221  12233  223333  22   7899999887532 46789988877777998876    8999999999  9


Q ss_pred             CcEEEEecccccCcc--eeccCcc--cceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcC
Q 015729          169 PALFLVDGVSSICAI--DFRMDEW--GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG  244 (401)
Q Consensus       169 ~~~li~D~a~~~~~~--~~~~~~~--~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  244 (401)
                      |+++|+|++++ +..  .+..+..  .+|++  +.+|+++++.++|++++++++++.+........          +..+
T Consensus       267 g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~--t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~----------~~~~  333 (465)
T 2yky_A          267 GALLIFDEVMT-SRLSGGGAQEMLGISADLT--TLGKYIGGGMSFGAFGGRRDLMERFDPARDGAF----------AHAG  333 (465)
Confidence            99999999998 521  1112222  35655  566999876668999999998877654100000          0001


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcCC-CC----
Q 015729          245 TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPS-HI----  317 (401)
Q Consensus       245 ~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~-~~----  317 (401)
                         +++.++..+++..++++.+.++   ...++..++.+++++.|+++  ...+...  ....+.++++.+++ .+    
T Consensus       334 ---T~~~npla~aAa~aaL~~l~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--v~g~G~~~~i~~~~~~~~~~~  405 (465)
T 2yky_A          334 ---TFNNNILTMSAGHAALTQIYTR---QAASDLSASGDRFRANLNRIAVENQAPLQ--FTGLGSLGTIHFSRAPIRSAG  405 (465)
Confidence               2335555667777888877654   46777888888888888775  2322111  11244567776643 11    


Q ss_pred             --------CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          318 --------NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       318 --------~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                              ...++.+.|+++ ||.+.++...   .   ++  ..+|++|+|+++++++++++++
T Consensus       406 ~~~~~d~~~~~~~~~~ll~~-GV~v~p~~~~---~---~s--~~~t~edid~~l~~l~~~l~~~  460 (465)
T 2yky_A          406 DVRAADQQLKELFFFHMLRK-GIYLAPRGMY---A---LS--LEIADAGRDAFAEALADFIGEQ  460 (465)
Confidence                    134678888876 9998876421   1   33  3579999999999999998765

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.87  E-value=6.2e-20  Score=170.79  Aligned_cols=291  Identities=13%  Similarity=0.081  Sum_probs=201.9

Q ss_pred             HhcCCCCceEEecCChhHHHHHHHhccCCC----CCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC---CCCCCCChHHH
Q 015729           54 IFKTTSGTPFLIPTTGTGAWESALTNTLSP----GDRIISFLIGQFSLLWIDQQQRLNFNVDVVES---DWGEGAKLDVL  126 (401)
Q Consensus        54 ~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~----gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~~~~d~~~l  126 (401)
                      .+|.+.....++++|+|.++.+++.+.+++    +|+|+++.+.|.|..  ......|+++++++.   +....+|++.+
T Consensus       128 ~~G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~--kAliL~Gl~Pv~V~p~~d~~~~~id~e~l  205 (501)
T 3hl2_A          128 LAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF--KSMITAGFEPVVIENVLEGDELRTDLKAV  205 (501)
T ss_dssp             HTTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH--HHHHHTTCEEEEECEEEETTEEEECHHHH
T ss_pred             HcCCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHH--HHHHHcCCeEEEEeeeecccccCCCHHHH
Confidence            348887666888999998888777665553    499999999999875  556778999999986   33457899999


Q ss_pred             HHHHhccCCCCceEEEEEecC-CCcccccchHHHHHHhhhcCCCcEEEEecccccCccee-----ccCccc-ceEEEecC
Q 015729          127 ASKLAADTAHTIKAICIVHNE-TATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF-----RMDEWG-IDVALTGS  199 (401)
Q Consensus       127 e~~~~~~~~~~~~~i~~~~~~-n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~-----~~~~~~-~di~~~s~  199 (401)
                      |+++++... +..+++++.++ +..+.+.|+++|.++|++  +|+++++|+||+......     .....| +|+++.|.
T Consensus       206 e~aI~e~ga-~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~--~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~  282 (501)
T 3hl2_A          206 EAKVQELGP-DCILCIHSTTSCFAPRVPDRLEELAVICAN--YDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSL  282 (501)
T ss_dssp             HHHHHHHCG-GGEEEEEEECSCCTTBCCCCHHHHHHHHHH--HTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred             HHHHHhcCC-CcEEEEEecCCCCCCcccccHHHHHHHHHH--cCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEecc
Confidence            999987531 22333434333 324466899999999999  999999999998654211     122345 99999999


Q ss_pred             CCcccCCCcceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 015729          200 QKALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERH  278 (401)
Q Consensus       200 ~K~l~g~~g~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~  278 (401)
                      ||++..+.|.|+++++ +++++++....                .|+     .+....+.+..++..+-..|+++..++.
T Consensus       283 HK~llvpIGG~ii~~~d~e~l~~~~~~y----------------PGr-----~S~Spsldl~~tLL~lGr~Gy~~ll~e~  341 (501)
T 3hl2_A          283 DKNFMVPVGGAIIAGFNDSFIQEISKMY----------------PGR-----ASASPSLDVLITLLSLGSNGYKKLLKER  341 (501)
T ss_dssp             HHHHCCCSSCEEEEESCHHHHHHHHHTS----------------CSC-----BCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccceeecCceEEEeCCHHHHHHHHHhC----------------CCC-----CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999878776666554 45556553321                122     2333445678888888888999999999


Q ss_pred             HHHHHHHHHHHHHc----CCccccCCCccCCceeEEEEcCC-----CCCHHHHHHHHHhhCCeE----EccCC-------
Q 015729          279 RRLGKATRLAVEAW----GLKNCTQKEEWFSDTVTAVIVPS-----HINSSEIVRRAWQRYNLS----LGLGL-------  338 (401)
Q Consensus       279 ~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~L~~~~~i~----v~~g~-------  338 (401)
                      .++++++++.|+++    |-+++...   .-+.-+++.+..     +.+..++...|..+ +|.    |.++.       
T Consensus       342 ~ela~~L~~~L~~la~~~ge~ll~~~---~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r-~vsG~Rvv~~~~~~~i~g~  417 (501)
T 3hl2_A          342 KEMFSYLSNQIKKLSEAYNERLLHTP---HNPISLAMTLKTLDEHRDKAVTQLGSMLFTR-QVSGARVVPLGSMQTVSGY  417 (501)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCBCCCT---TCSSEEEEECTTSCTTTSCHHHHHHHHHHHT-TCCSCEEECTTCCEEETTE
T ss_pred             HHHHHHHHHHHHHHHHhcChhhcCCC---CCceeEEEecccccccccccHHHHHHHHHhc-CCCcceeecCCCceEECCe
Confidence            99999999999985    44554332   123345566521     11234566667655 432    22222       


Q ss_pred             -----C----CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          339 -----N----KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       339 -----~----~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                           .    .+.-.|+-+.+..-.+++|+|.++++++++++++.
T Consensus       418 ~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~  462 (501)
T 3hl2_A          418 TFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVR  462 (501)
T ss_dssp             EESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             eecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence                 1    12235688877777899999999999999997663

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.86  E-value=1.3e-20  Score=179.60  Aligned_cols=315  Identities=12%  Similarity=0.079  Sum_probs=204.4

Q ss_pred             ChHHHHHHHccCcCC---CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--CCCCCeEEEEcCCc
Q 015729           20 IPDQVIRAMNRNNED---YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQ   94 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~~~gd~vl~~~~~~   94 (401)
                      -+|+|++|+.++...   ...+  .....++.+.|++.+..  .+.+.|+++||+|++.++...  ....++|+....+|
T Consensus       104 ~hp~v~~Av~~q~~~~~~~~~~--~~~~~~lae~l~~~~p~--~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~y  179 (454)
T 4ao9_A          104 SAPEIRDAVIEAMQGGINLTGH--NLLEGRLARLICERFPQ--IEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGY  179 (454)
T ss_dssp             CCHHHHHHHHHHHHTCSCCCSE--ESSHHHHHHHHHHHSTT--CSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCB
T ss_pred             CCHHHHHHHHHHHhcCCCccCC--cHHHHHHHHHHHHhCCC--CCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCc
Confidence            356666666553322   1112  22344778888888753  245999999999999988542  33457899998888


Q ss_pred             chHHHHHHH--HHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHhhhcCC
Q 015729           95 FSLLWIDQQ--QRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRH  168 (401)
Q Consensus        95 ~~~~~~~~~--~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~  168 (401)
                      |+.......  ............+.+   |.+.+++.+++.. +++.+|++....+..|.+.|    +++|.++|++  +
T Consensus       180 HG~t~~~~~~~~~~~~~~~~~~~p~n---d~~~l~~~l~~~~-~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~--~  253 (454)
T 4ao9_A          180 HGGVLGFGARPSPTTVPFDFLVLPYN---DAQTARAQIERHG-PEIAVVLVEPMQGASGCIPGQPDFLQALRESATQ--V  253 (454)
T ss_dssp             CSTTCBBSSSBCTTSCCSEEEEECTT---CHHHHHHHHHHTG-GGEEEEEECSEESTTTCEECCHHHHHHHHHHHHH--H
T ss_pred             CCccccccccccCccCCCCcccCCCc---hHHHHHHHHhhcC-CceEEEEeccccCCCCccCCchhhHHHHHHHHhh--c
Confidence            876421100  001111122222222   7999999998755 46889999988888999887    8899999999  9


Q ss_pred             CcEEEEecccccCcce--e--ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcC
Q 015729          169 PALFLVDGVSSICAID--F--RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG  244 (401)
Q Consensus       169 ~~~li~D~a~~~~~~~--~--~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  244 (401)
                      |+++|+||++. |-.-  +  ......+|+++++  |.++++.++|.+.+++++++.+.+.... .++           +
T Consensus       254 g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t~g--K~lggG~Piga~~~~~ei~~~~~~~~~~-~~h-----------~  318 (454)
T 4ao9_A          254 GALLVFDEVMT-SRLAPHGLANKLGIRSDLTTLG--KYIGGGMSFGAFGGRADVMALFDPRTGP-LAH-----------S  318 (454)
T ss_dssp             TCEEEEECTTG-GGGSTTCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECHHHHGGGCTTTCS-CCC-----------C
T ss_pred             CCEEEEECCCc-CCCccccchhccCCCCcEEEec--cccCCCCcceeeeeHHHHHHHHhhccCC-ccc-----------c
Confidence            99999999987 3111  1  1112347888877  9898888899999999998877643211 111           1


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcCCC-C----
Q 015729          245 TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPSH-I----  317 (401)
Q Consensus       245 ~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~-~----  317 (401)
                      .  +++.++..+++..++|+.+.++   +..++..++.++|++.|+++  ...+...  -...+.++.+.+-++ .    
T Consensus       319 ~--T~~gnPla~AAala~L~~l~~~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~--vrg~G~m~gi~f~~~~~~~~~  391 (454)
T 4ao9_A          319 G--TFNNNVMTMAAGYAGLTKLFTP---EAAGALAERGEALRARLNALCANEGVAMQ--FTGIGSLMNAHFVQGDVRSSE  391 (454)
T ss_dssp             C--TTTTCHHHHHHHHHHHHHTSCH---HHHHHHHHHHHHHHHHHHHHHHHHTBSCE--EEEETTEEEEESCCSCCCSGG
T ss_pred             C--CCCCCHHHHHHHHHHHHHHhcc---ChhHHHHHHHHHHHHHHHHHHhhCCCCEE--EeeeceEEEEEEecCCCCCHH
Confidence            1  3345677777888888877653   46777778888888888764  1222111  112345666665221 1    


Q ss_pred             -----CH---HHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          318 -----NS---SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       318 -----~~---~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                           +.   ..+...|+++ ||.+.|.      +.+.+  ...+|++|||++++++++++.+.+.
T Consensus       392 ~~~~~d~~~~~~~~~~ll~~-Gv~~~p~------~~~~~--s~~~T~~dId~~l~al~~~l~~~~a  448 (454)
T 4ao9_A          392 DLAAVDGRLRQLLFFHLLNE-DIYSSPR------GFVVL--SLPLTDADIDRYVAAIGSFIGGHGA  448 (454)
T ss_dssp             GGTTCCHHHHHHHHHHHHHT-TEECCTT------CEEEC--CTTCCHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHhhhHHHHHHHHHHHHHC-CEEEcCC------CCEEE--eCCCCHHHHHHHHHHHHHHHHhccc
Confidence                 11   2455667777 9987642      23333  3457999999999999999988653

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.86  E-value=2.2e-19  Score=169.50  Aligned_cols=304  Identities=12%  Similarity=0.077  Sum_probs=196.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCC----CCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLS----PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES  115 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~----~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~  115 (401)
                      .....+.+...+.+.+|.+.....++++|+|.++.+++.+..+    +++.|+++...|.|..  +.+...|++++.++.
T Consensus        96 ~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~--kAl~l~Gl~p~~v~~  173 (450)
T 3bc8_A           96 LNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF--KSMVTAGFEPVVIEN  173 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH--HHHHHTTCEEEEECC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHH--HHHHHcCCeeEEEEe
Confidence            3456668888888999998776668888888555554433333    3789999999888765  667889999888876


Q ss_pred             ---CCCCCCChHHHHHHHhccCCCCceEEEEEecC-CCcccccchHHHHHHhhhcCCCcEEEEecccccCcceec-c--C
Q 015729          116 ---DWGEGAKLDVLASKLAADTAHTIKAICIVHNE-TATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR-M--D  188 (401)
Q Consensus       116 ---~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~-n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~-~--~  188 (401)
                         +...++|++.+++++++++.+. +++++..++ +.+|.+.|+++|.++|++  +|+++|+|+||+....... +  .
T Consensus       174 ~~~~~~~~id~~~le~aI~~~~~~~-~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~--~gi~l~VD~A~G~~~~~~~~l~~~  250 (450)
T 3bc8_A          174 VLEGDELRTDLKAVEAKIQELGPEH-ILCLHSTTACFAPRVPDRLEELAVICAN--YDIPHVVNNAYGLQSSKCMHLIQQ  250 (450)
T ss_dssp             EEETTEEECCHHHHHHHHHHHCGGG-EEEEEEESSCCTTBCCCCHHHHHHHHHH--HTCCEEEECTTTTTCHHHHHHHHH
T ss_pred             eecCccCCcCHHHHHHHHHhcCCCC-EEEEEEECCcCCCceecCHHHHHHHHHH--CCCeEEEECCCchhhhhhHhHHHH
Confidence               4456899999999998754122 344444443 445688999999999999  9999999999986432211 0  1


Q ss_pred             --c-ccceEEEecCCCcccCCCcceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHH
Q 015729          189 --E-WGIDVALTGSQKALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALD  264 (401)
Q Consensus       189 --~-~~~di~~~s~~K~l~g~~g~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~  264 (401)
                        + .++|+++.|.||++..+.|++++.++ ++.++.+...               +. +.   .+.++.  ..++..+.
T Consensus       251 a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~---------------~~-g~---~s~Sps--L~l~~~l~  309 (450)
T 3bc8_A          251 GARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKM---------------YP-GR---ASASPS--LDVLITLL  309 (450)
T ss_dssp             HHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHH---------------SC-SC---BCSHHH--HHHHHHHH
T ss_pred             HhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHH---------------hh-cC---CcccHH--HHHHHHHH
Confidence              1 27999999999999999998999874 4444433221               10 11   011221  34444544


Q ss_pred             HHHHhcHHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCCceeEEEEcC-----CCCCHHHHHHHHHhh--CCeE
Q 015729          265 LIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFSDTVTAVIVP-----SHINSSEIVRRAWQR--YNLS  333 (401)
Q Consensus       265 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~L~~~--~~i~  333 (401)
                      .+..+++.+..++..++++++++.|+++    |..++.....  . .-..+.++     ...|...+.-.+...  .|..
T Consensus       310 ~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~--~-~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~  386 (450)
T 3bc8_A          310 SLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHN--P-ISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGAR  386 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTC--S-SEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccC--C-CcceeecccccccccCCCceeEEEecCCCCccce
Confidence            4455567888888899999999999764    6666543211  1 11223231     122334444444433  1222


Q ss_pred             Ec-------------cCCC----CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          334 LG-------------LGLN----KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       334 v~-------------~g~~----~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      +.             ..+.    -....++-+.+....+++|+++++++|++++++
T Consensus       387 v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~  442 (450)
T 3bc8_A          387 AVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNI  442 (450)
T ss_dssp             EECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence            22             1111    112345666555568999999999999998754

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.84  E-value=8.1e-19  Score=168.70  Aligned_cols=327  Identities=16%  Similarity=0.085  Sum_probs=214.0

Q ss_pred             ChHHHHHHHccCcCC----CCCc-cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC-------CC-CCe
Q 015729           20 IPDQVIRAMNRNNED----YRSP-AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SP-GDR   86 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~----~~~~-~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~-------~~-gd~   86 (401)
                      -+|++.+++.++...    +... ...+...++.++|.++...+- +.+.|++||++|++.++....       ++ ..+
T Consensus        84 ~~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~~-~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~  162 (473)
T 4e3q_A           84 DHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDS-GRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRK  162 (473)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCSS-CEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCE
T ss_pred             CCHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCCCc-cEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcce
Confidence            346666666553321    1111 123445578888888876543 349999999999999884311       22 357


Q ss_pred             EEEEcCCcchHHHHHHHHH-------cC---CcEEEEeCCC------CCCC-------ChHHHHHHHhccCCCCceEEEE
Q 015729           87 IISFLIGQFSLLWIDQQQR-------LN---FNVDVVESDW------GEGA-------KLDVLASKLAADTAHTIKAICI  143 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~-------~g---~~~~~v~~~~------~~~~-------d~~~le~~~~~~~~~~~~~i~~  143 (401)
                      |+....+||+.....+...       .+   .....++.+.      .+..       ..+++++.+.+...+++.+|++
T Consensus       163 ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~  242 (473)
T 4e3q_A          163 ILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFA  242 (473)
T ss_dssp             EEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEE
T ss_pred             EEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEe
Confidence            8888889988664332211       11   1234444322      1111       1245666665443356889999


Q ss_pred             EecCCCcccccc----hHHHHHHhhhcCCCcEEEEecccccCcc---ee--ccCcccceEEEecCCCcccCC-CcceEEE
Q 015729          144 VHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSICAI---DF--RMDEWGIDVALTGSQKALSLP-TGMGIVC  213 (401)
Q Consensus       144 ~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~~--~~~~~~~di~~~s~~K~l~g~-~g~G~l~  213 (401)
                      ..+....|.+.+    +++|.++|++  +|+++|.||++..+..   .+  +.....+|+++++  |.++++ .++|.+.
T Consensus       243 EPiqg~gG~~~p~~~fl~~lr~lc~~--~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~--K~l~gG~~Pl~av~  318 (473)
T 4e3q_A          243 EPVMGAGGVIPPAKGYFQAILPILRK--YDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISS--KNLTAGFFPMGAVI  318 (473)
T ss_dssp             CSSBSTTTSBCCCTTHHHHHHHHHHH--TTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEEC--GGGGTTSSCCEEEE
T ss_pred             CCccCCCCceeCCHHHHHHHHHHhcc--cceEEeccCccccCCcccchhHHHhcCCCCChHHhc--ccccCCCCCccccc
Confidence            998888898875    7899999999  9999999999875321   12  2223348998887  988776 6899999


Q ss_pred             ecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-
Q 015729          214 ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-  292 (401)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-  292 (401)
                      +++++.+.+.....         ....+.-|.  +++-++..+++..++++.+.+++   ..++..+..++|++.|+++ 
T Consensus       319 ~~~~i~~~~~~~~~---------~~~~~~hg~--T~~Gnpla~Aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~  384 (473)
T 4e3q_A          319 LGPELSKRLETAIE---------AIEEFPHGF--TASGHPVGCAIALKAIDVVMNEG---LAENVRRLAPRFEERLKHIA  384 (473)
T ss_dssp             ECHHHHHHHHHHHH---------HHSCCCCCC--TTTTCHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHhccccc---------cccccccCC--CCCCCcchhhhhhhhhhhhcccc---HHHHHHHHHHHHHHHHHHHh
Confidence            99999876643100         000011122  44566778888899999988865   6667778888999999886 


Q ss_pred             CCccccCCCccCCceeEEEEcCCC------CC-----HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHH
Q 015729          293 GLKNCTQKEEWFSDTVTAVIVPSH------IN-----SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLG  361 (401)
Q Consensus       293 g~~~~~~~~~~~~~~~~~~~~~~~------~~-----~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~  361 (401)
                      ....+.  +....+.++.+++-..      .+     ...+.+.++++ |+.+++.     ++.+|+.+...+|++|+|+
T Consensus       385 ~~~~v~--~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~-----g~~i~l~PPL~it~~eid~  456 (473)
T 4e3q_A          385 ERPNIG--EYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDL-GLICRPL-----GQSVVLCPPFILTEAQMDE  456 (473)
T ss_dssp             TSTTEE--EEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECEEE-----TTEEEECCCTTCCHHHHHH
T ss_pred             cCCCee--EEeecceEEEEEEecCccccccccccHHHHHHHHHHHHHC-CcEEEec-----CCEEEEeCCCCCCHHHHHH
Confidence            322221  1223455677775211      11     34678888876 9987643     5689998887899999999


Q ss_pred             HHHHHHHHHHhc
Q 015729          362 CLAGVEMILKDV  373 (401)
Q Consensus       362 ~~~~i~~~l~~~  373 (401)
                      ++++++++++++
T Consensus       457 ~~~~l~~al~~v  468 (473)
T 4e3q_A          457 MFDKLEKALDKV  468 (473)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.73  E-value=2e-17  Score=169.29  Aligned_cols=327  Identities=10%  Similarity=0.003  Sum_probs=200.2

Q ss_pred             hHHHHHHHccCcCC--CCC--ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC-----CC--------
Q 015729           21 PDQVIRAMNRNNED--YRS--PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-----SP--------   83 (401)
Q Consensus        21 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~-----~~--------   83 (401)
                      +|++.+|+.++...  |..  ....+...+|.++|+++.+...-+.++|++||++|++.++...+     ..        
T Consensus       399 ~p~i~~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~  478 (831)
T 4a0g_A          399 QAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEE  478 (831)
T ss_dssp             HHHHHHHHHHHHHHHSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC------
T ss_pred             CHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccc
Confidence            56666666664321  211  11234455888999998864423459999999999998874321     11        


Q ss_pred             ----CCeEEEEcCCcchHHHHHHHHHcCCc----------------------------EEEEeCCCCCC--------C-C
Q 015729           84 ----GDRIISFLIGQFSLLWIDQQQRLNFN----------------------------VDVVESDWGEG--------A-K  122 (401)
Q Consensus        84 ----gd~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~~--------~-d  122 (401)
                          ..+|+....+||+..+..+.- .|..                            +..++.+....        . +
T Consensus       479 ~~~~r~~iI~~~~syHG~T~gals~-tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  557 (831)
T 4a0g_A          479 EKHIVVKVIALRGSYHGDTLGAMEA-QAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTS  557 (831)
T ss_dssp             ---CCEEEEEETTCCCCSSHHHHHT-SCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESC
T ss_pred             cccCccEEEEecCCcccCceeeeec-cCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccc
Confidence                237888899998876543322 2210                            01222221100        0 1


Q ss_pred             ------------------hHHHHHHHhc----cCCCCceEEEEEec-CCCcccccc----hHHHHHHhhhcCCCcEEEEe
Q 015729          123 ------------------LDVLASKLAA----DTAHTIKAICIVHN-ETATGVTNN----LSKVRKLLDEYRHPALFLVD  175 (401)
Q Consensus       123 ------------------~~~le~~~~~----~~~~~~~~i~~~~~-~n~tG~~~~----l~~i~~l~~~~~~~~~li~D  175 (401)
                                        .+.+++.+++    ...+++++|++... ++..|...+    +++|.++|++  ||+++|+|
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~--~gilLI~D  635 (831)
T 4a0g_A          558 RDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRN--RKIPVIFD  635 (831)
T ss_dssp             HHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHH--TTCCEEEE
T ss_pred             hhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHH--cCCeEEEE
Confidence                              2567777652    11246889999886 888898875    8899999999  99999999


Q ss_pred             cccccC-c--ceeccC--cccceEEEecCCCcccCC-CcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCC
Q 015729          176 GVSSIC-A--IDFRMD--EWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY  249 (401)
Q Consensus       176 ~a~~~~-~--~~~~~~--~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  249 (401)
                      |++... .  ..+..+  ...+|+++++  |.++++ .++|++++++++.+.+.......          .+.-|  +++
T Consensus       636 EV~tGfGRtG~~fa~e~~gv~PDiitls--K~L~gG~~Plgav~~~~~i~~~~~~~~~~~----------~~~hg--~T~  701 (831)
T 4a0g_A          636 EVFTGFWRLGVETTTELLGCKPDIACFA--KLLTGGMVPLAVTLATDAVFDSFSGDSKLK----------ALLHG--HSY  701 (831)
T ss_dssp             CTTTTTTTTSBSSTHHHHSSCCSEEEEC--GGGGTTSSCCEEEEECHHHHHTTCSSCGGG----------SCCCC--CTT
T ss_pred             cCccccccCCCchhhHhcCCCCcEEEEe--cccccCccCcEEEEECHHHHHHHhcccccc----------cceee--cCC
Confidence            988732 1  112112  2347888765  999776 47899999999988775421000          01112  244


Q ss_pred             CCcHHHHHHHHHHHHHHHHhcHHHHH-HHHHHH----HHHHHHHHHHcCCccccCCCccCCceeEEEEcCCC--------
Q 015729          250 TPSIQLLYGLRAALDLIFEEGLENVI-ERHRRL----GKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH--------  316 (401)
Q Consensus       250 ~~~~~~~~a~~~al~~~~~~g~~~~~-~~~~~~----~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~--------  316 (401)
                      +.++..+++..++++.+.++++.... +.....    .+.+.+.+.+..  ....  ....+.+..+++...        
T Consensus       702 ~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~--~v~~--vrg~Gl~~~iel~~~~~~~~~~~  777 (831)
T 4a0g_A          702 SAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHS--AVQR--VVVIGTLFALELKADASNSGYAS  777 (831)
T ss_dssp             TTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHST--TEEE--EEEETTEEEEEEC---------C
T ss_pred             cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--Ccee--EeecccEEEEEEecCccccccch
Confidence            56778888899999988765421111 111111    112334444431  1111  112345666776321        


Q ss_pred             CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          317 INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       317 ~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      ..+.++.+.|+++ ||.+++.     ++.+||++...+|++|||+++++|++++++++
T Consensus       778 ~~a~~~~~~l~e~-Gv~v~p~-----g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l~  829 (831)
T 4a0g_A          778 LYAKSLLIMLRED-GIFTRPL-----GNVIYLMCGPCTSPEICRRLLTKLYKRLGEFN  829 (831)
T ss_dssp             HHHHHHHHHHHHT-TEECCCB-----TTEEEEECCTTCCHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHC-CcEEEec-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            1244688888876 9998754     57999988888899999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	401
d1iuga_	348	c.67.1.3 (A:) Subgroup IV putative aspartate amino	6e-63
d2ch1a1	388	c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminas	6e-55
d2bkwa1	382	c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransfe	2e-51
d1h0ca_	388	c.67.1.3 (A:) Alanine-glyoxylate aminotransferase	3e-46
d1vjoa_	377	c.67.1.3 (A:) Alanine-glyoxylate aminotransferase	5e-46
d1m32a_	361	c.67.1.3 (A:) 2-aminoethylphosphonate transaminase	5e-42
d1bjna_	360	c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT	4e-20
d1w23a_	360	c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT	1e-18
d2c0ra1	361	c.67.1.4 (A:2-362) Phosphoserine aminotransferase,	3e-18
d1jf9a_	405	c.67.1.3 (A:) NifS-like protein/selenocysteine lya	2e-10
d1t3ia_	408	c.67.1.3 (A:) Probable cysteine desulfurase SufS {	1e-05
d1p3wa_	391	c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich	0.002
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	0.003

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 348

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

 Score =  203 bits (517), Expect = 6e-63
 Identities = 81/364 (22%), Positives = 157/364 (43%), Gaps = 17/364 (4%)

Query: 10  NHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTG 69
           + L  PGPV +  + + A+ R    +R+ A   +       +++ F+T  G   ++  +G
Sbjct: 1   DWLLTPGPVRLHPKALEALARPQLHHRTEAAREVFLKARGLLREAFRT-EGEVLILTGSG 59

Query: 70  TGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASK 129
           T A E+ + N  +PG+R++  + G+FS  + +        V+ ++  +G+  + +     
Sbjct: 60  TLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPED---- 115

Query: 130 LAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDE 189
                      + +VH+ET+TG   +L  + +   E     L   D V+S+   +  ++ 
Sbjct: 116 ---VAKEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEA 172

Query: 190 WGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY 249
            G+D A +GSQK L  P G+G V  SP+ALE  K               K         +
Sbjct: 173 MGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEG----ESAW 228

Query: 250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVT 309
           TP+I L+  + A L+ +     E++  +  +      +  E           + FS  V 
Sbjct: 229 TPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEGG----LRPVPKRFSPAVA 284

Query: 310 AVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMI 369
           A  +P  +  +  V+ A+ +    +  G   + GKVFR+  +G  +  + LG       +
Sbjct: 285 AFYLPEGVPYAR-VKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREV 343

Query: 370 LKDV 373
           L+++
Sbjct: 344 LEEI 347

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

 Score =  184 bits (466), Expect = 6e-55
 Identities = 94/377 (24%), Positives = 173/377 (45%), Gaps = 11/377 (2%)

Query: 1   MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
           +       +  +  PGP +   +V+ AM           +      + + ++ IF+T + 
Sbjct: 9   LRNPLIIPEKIMMGPGPSNCSKRVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIFQTENR 68

Query: 61  TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
               +  +     E+ L+N L  GDR++  + G ++   ++  +R   +V  +E      
Sbjct: 69  ATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRP 128

Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
             L+ LA    A   H  K + + H ++++G+   L  V +    ++H  L +VD V+S+
Sbjct: 129 FSLETLAR---AIELHQPKCLFLTHGDSSSGLLQPLEGVGQ--ICHQHDCLLIVDAVASL 183

Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDW-----K 235
           C + F MD+W ID   TG+QK L  P G+  +  SPKAL+  +  ++    F W      
Sbjct: 184 CGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLG 243

Query: 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK 295
           +Y   Y+    + +T +  L++ LR AL  I EEGLEN I+R     +     +   GL 
Sbjct: 244 NYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLD 303

Query: 296 NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLN 355
              +       TVT +++P  ++  ++ + A   ++L +  GL    GK +R+G +G  +
Sbjct: 304 IFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECS 363

Query: 356 ELQ-LLGCLAGVEMILK 371
            +Q +   L G +  LK
Sbjct: 364 TVQKIQFYLYGFKESLK 380

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  174 bits (441), Expect = 2e-51
 Identities = 88/383 (22%), Positives = 167/383 (43%), Gaps = 27/383 (7%)

Query: 10  NHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGT---PFLIP 66
           + L +PGP+ +   V +A++  +  + SP   ++ + +L++ + +FK+ + +   PF++ 
Sbjct: 4   DTLLIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLA 63

Query: 67  TTGTGAWESALTNTL---SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKL 123
            +GT  W+   +N +   +P   ++    G FS  + D  +     VDVV       +  
Sbjct: 64  GSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVP 123

Query: 124 DVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI 183
                     + ++  A+ + H +T+T V ++L  + + + +      F+VD V SI   
Sbjct: 124 LE--LITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCE 181

Query: 184 DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEA-------SKTAKSVRVFFDWKD 236
           +F  DEWG+D ALT SQKA+  P G+ I   S + ++                    W  
Sbjct: 182 EFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTP 241

Query: 237 YIKFYNLGT-FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG-- 293
            ++ Y  G   +  TP +QL+  L  AL  I EEGL    + HR +    + ++      
Sbjct: 242 IMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQL 301

Query: 294 LKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK-VAGKVFRIGHLG 352
                      +  +TAV V    +    V    + + + +  G++K +  K  RIGH+G
Sbjct: 302 TSVSRYPSNMSAHGLTAVYVADPPD----VIAFLKSHGVVIAGGIHKDIGPKYIRIGHMG 357

Query: 353 HL----NELQLLGCLAGVEMILK 371
                 N   +  C   +++ L+
Sbjct: 358 VTACNKNLPYMKNCFDLIKLALQ 380

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (407), Expect = 3e-46
 Identities = 99/380 (26%), Positives = 163/380 (42%), Gaps = 12/380 (3%)

Query: 1   MDYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG 60
           +  +  P    L  PGP ++P +++ A         S  +  +   + E I+ +F+T + 
Sbjct: 12  LKPLSIP-NQLLLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNP 70

Query: 61  TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG 120
              +I  +G  A E+AL N L PGD  +    G +    +D  +R+   V  +  D G  
Sbjct: 71  LTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGH 130

Query: 121 AKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI 180
             L  +         H    + + H E++TGV   L    +L   Y+     LVD V+S+
Sbjct: 131 YTLQEVE---EGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCL--LLVDSVASL 185

Query: 181 CAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK----- 235
                 MD  GID+  +GSQKAL+ P G  ++  S KA +   + K+    F        
Sbjct: 186 GGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLA 245

Query: 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK 295
           ++    +    + +T  +  LY LR +L LI E+GLEN   +HR         ++A GL+
Sbjct: 246 NFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQ 305

Query: 296 NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLN 355
              +       TVT V VP+  +  +IV      +++ +  GL    GKV RIG LG   
Sbjct: 306 LFVKDPALRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNA 365

Query: 356 ELQ-LLGCLAGVEMILKDVG 374
             + +      +   L+   
Sbjct: 366 TRENVDRVTEALRAALQHCP 385

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} Length = 377

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

 Score =  160 bits (404), Expect = 5e-46
 Identities = 103/368 (27%), Positives = 175/368 (47%), Gaps = 9/368 (2%)

Query: 7   PGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIP 66
                L  PGP +    V++AMN +   +  PA  AL   +   ++ +++T +     + 
Sbjct: 16  VPSRLLLGPGPSNAHPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVS 75

Query: 67  TTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVL 126
            TGT A E+ + N + PGD ++  + G F    +D   R   +V  +   WGE      L
Sbjct: 76  GTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEV---FSL 132

Query: 127 ASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR 186
                A   H    + +VH ET+TG    L  V +L  E     L LVD V+S+  +   
Sbjct: 133 EELRTALETHRPAILALVHAETSTGARQPLEGVGELCRE--FGTLLLVDTVTSLGGVPIF 190

Query: 187 MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS--VRVFFDWKDYIKFYNLG 244
           +D WG+D+A + SQK L    G      S +A+E  +  ++     + D     K++   
Sbjct: 191 LDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSE 250

Query: 245 TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWF 304
             + +T  I L Y LR AL LI +EGL N  +RH++  +     +E  GL    + +E+ 
Sbjct: 251 RVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVE-KEYR 309

Query: 305 SDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQ-LLGCL 363
             T+T V +P  ++   + RR    +N+ +G GL ++AGKV+R+G +G  +  + +   +
Sbjct: 310 LPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLI 369

Query: 364 AGVEMILK 371
             +E +L+
Sbjct: 370 PALEQVLR 377

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} Length = 361

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

 Score =  149 bits (376), Expect = 5e-42
 Identities = 71/363 (19%), Positives = 137/363 (37%), Gaps = 11/363 (3%)

Query: 12  LFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSG-TPFLIPTTGT 70
           L  PGP+     V  AM  ++  +       + + + + +  +   + G T  L+  +G+
Sbjct: 3   LLTPGPLTTSRTVKEAMLFDSCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGS 62

Query: 71  GAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKL 130
            A E+ L + L P D+++    G +    ++    +       +       + DV A   
Sbjct: 63  YAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVA--RPDVQAIDA 120

Query: 131 AADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEW 190
             +   TI  I +VH+ET TG+ N + +V      +R+   ++VD +SS   I   +   
Sbjct: 121 ILNADPTISHIAMVHSETTTGMLNPIDEVGA--LAHRYGKTYIVDAMSSFGGIPMDIAAL 178

Query: 191 GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYT 250
            ID  ++ + K +    G   V A  + L A K          +  +    +    W +T
Sbjct: 179 HIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFT 238

Query: 251 PSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTA 310
                +     AL  + +EG      +  +  + + +A       N    +E  S  +TA
Sbjct: 239 SPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITA 298

Query: 311 VIVPSH--INSSEIVRRAWQR-YNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVE 367
              P       SE  RR  ++ + +  G          FRIG++G +    +   L  + 
Sbjct: 299 FYSPEDPQYRFSEFYRRLKEQGFVIYPGKVS---QSDCFRIGNIGEVYAADITALLTAIR 355

Query: 368 MIL 370
             +
Sbjct: 356 TAM 358

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} Length = 360

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

 Score = 88.6 bits (218), Expect = 4e-20
 Identities = 39/352 (11%), Positives = 96/352 (27%), Gaps = 30/352 (8%)

Query: 11  HLFVPGPVHIPDQVIRAMNRNNEDY------------RSPAVPALTKTLLEDIKKIFKTT 58
             F  GP  +P +V++   +   D+            R      + +   +D + +    
Sbjct: 3   FNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVP 62

Query: 59  SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG 118
           S    L    G     +A+   +        ++   +      ++ +     +V ++   
Sbjct: 63  SNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVT 122

Query: 119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS 178
               L  +        +     +    NET  G+            ++    +   D  S
Sbjct: 123 VDG-LRAVKPMREWQLSDNAAYMHYCPNETIDGIAI------DETPDFGADVVVAADFSS 175

Query: 179 SICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYI 238
           +I +    +  +G+  A  G+QK +       ++             K+        DY 
Sbjct: 176 TILSRPIDVSRYGVIYA--GAQKNIGPAGLTIVIVRED------LLGKANIACPSILDYS 227

Query: 239 KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCT 298
              + G+ +   P+            L    G+  + + +++  +     ++        
Sbjct: 228 ILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRND 287

Query: 299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGH 350
             +   S       +         +  +     L    G   V G   R   
Sbjct: 288 VAKRNRSRMNVPFQLADSALDKLFLEES-FAAGLHALKGHRVVGG--MRASI 336

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} Length = 360

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

 Score = 84.3 bits (207), Expect = 1e-18
 Identities = 31/334 (9%), Positives = 95/334 (28%), Gaps = 30/334 (8%)

Query: 9   KNHLFVPGPVHIPDQVIRAMNRNNEDY------------RSPAVPALTKTLLEDIKKIFK 56
           +   F  GP  +P   +    +   ++            RS +   + +     ++++ +
Sbjct: 3   QVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQ 62

Query: 57  TTSG-TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES 115
             +      +    +  +     N L+ G      L G +S   + + + L        +
Sbjct: 63  IPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAAST 122

Query: 116 DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD 175
                  +   +     +           +    +  T   ++ +   +   + A  + D
Sbjct: 123 KANSYQSIPDFSEFQLNENDA--------YLHITSNNTIYGTQYQNFPE--INHAPLIAD 172

Query: 176 GVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK 235
             S I +   +++++G+  A  G+QK L       ++          +   ++  +    
Sbjct: 173 MSSDILSRPLKVNQFGMIYA--GAQKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYATHI 230

Query: 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK 295
                YN    +       +L                   +   +         E+ G  
Sbjct: 231 KSDSLYNTPPTFSIYMLRNVLDW-----IKDLGGAEAIAKQNEEKAKIIYDTIDESNGFY 285

Query: 296 NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQR 329
               ++   S       + +   + + + +A ++
Sbjct: 286 VGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQ 319

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} Length = 361

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

 Score = 83.2 bits (204), Expect = 3e-18
 Identities = 44/361 (12%), Positives = 87/361 (24%), Gaps = 33/361 (9%)

Query: 9   KNHLFVPGPVHIPDQVIRAMNRNNEDY------------RSPAVPALTKTLLEDIKKIFK 56
           + + F  GP  +P +V+        DY            R     A+       +  +  
Sbjct: 3   RAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLG 62

Query: 57  TTSG-TPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES 115
             +G     I    +  +     N L  G      + G ++   + + + +        S
Sbjct: 63  NPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASS 122

Query: 116 DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD 175
           +      L  L              + +  NET  G              +       + 
Sbjct: 123 EASNYMTLPKLQ---EIQLQDNAAYLHLTSNETIEGAQ---------FKAFPDTGSVPLI 170

Query: 176 GVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK 235
           G  S   +    D     +   G+QK L       ++       E+ K   ++  +  + 
Sbjct: 171 GDMSSDILSRPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYV 230

Query: 236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK 295
                YN    +                               ++         ++ G  
Sbjct: 231 KNNSLYNTPPSFGIYM-----VNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFY 285

Query: 296 NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLN 355
                 +  SD      + S     E V+ + Q        G   V G   R      + 
Sbjct: 286 RGCVDVDSRSDMNITFRLASEELEKEFVKASEQE-GFVGLKGHRSVGG--LRASIYNAVP 342

Query: 356 E 356
            
Sbjct: 343 Y 343

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

 Score = 59.5 bits (143), Expect = 2e-10
 Identities = 53/303 (17%), Positives = 95/303 (31%), Gaps = 27/303 (8%)

Query: 20  IPDQVIRAMNR-NNEDYRSP-----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAW 73
            P QVI A        Y +       + A     +E+++K                    
Sbjct: 34  KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGT 93

Query: 74  ESALTNTLS--------PGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKL 123
              +    +         GD II   +   + +  W     R+   + V+  +     +L
Sbjct: 94  TEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQL 153

Query: 124 DVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI 183
           + L +     T    + + I H     G  N L+++  L  +  H A  LVDG  ++   
Sbjct: 154 ETLPTLFDEKT----RLLAITHVSNVLGTENPLAEMITLAHQ--HGAKVLVDGAQAVMHH 207

Query: 184 DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL 243
              +     D  +    K    PTG+GI+      L+     +            +    
Sbjct: 208 PVDVQALDCDFYVFSGHKLYG-PTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTW 266

Query: 244 GT----FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQ 299
                 F   TP+   + GL AAL+ +   GL N+ E  + L       +E+        
Sbjct: 267 TKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYG 326

Query: 300 KEE 302
            + 
Sbjct: 327 PQN 329

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 408

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 58/280 (20%), Positives = 94/280 (33%), Gaps = 26/280 (9%)

Query: 20  IPDQVIRAMNRNNEDYRSPAVPAL------TKTLLED----IKKIFKTTSGTPFLIPTTG 69
            P  V+  +    E+  +                 E     + K     S    +     
Sbjct: 34  KPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNA 93

Query: 70  TGA----WESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKL 123
           T A      S   N L  GD II+ ++   S L  W     +    +  V+ D  E   L
Sbjct: 94  TEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDL 153

Query: 124 DVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI 183
           +   + L+  T    K + +VH     G  N   ++ +L   ++  A  LVD   S    
Sbjct: 154 EHFKTLLSEKT----KLVTVVHISNTLGCVNPAEEIAQL--AHQAGAKVLVDACQSAPHY 207

Query: 184 DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASK--TAKSVRVFFDWKDYIKFY 241
              +     D  L  S   +  PTG+G +    + LEA          +   + D+    
Sbjct: 208 PLDVQLIDCDW-LVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTG 266

Query: 242 NLGT-FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRR 280
            L   F   TP+I     L AA+D + + G+EN+      
Sbjct: 267 ELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVE 306

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 23/216 (10%)

Query: 20  IPDQVIRAMNRNNEDYRSPAVPA--------LTKTLLED----IKKIFKTTSGTPFLIPT 67
           +  +V   M +      +   PA          +  ++     I  +             
Sbjct: 14  VDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSG 73

Query: 68  TGTGAW---ESALTNTLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKL 123
                    + A       G  II+      ++L    Q +R  F V  +         L
Sbjct: 74  ATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDL 133

Query: 124 DVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI 183
             L + +  DT      + I+H     GV  +++ + ++        ++ VD   S+  +
Sbjct: 134 KELEAAMRDDT----ILVSIMHVNNEIGVVQDIAAIGEM--CRARGIIYHVDATQSVGKL 187

Query: 184 DFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKAL 219
              + +  +D+      K      G+G +    K  
Sbjct: 188 PIDLSQLKVDLMSFSGHKIYGPK-GIGALYVRRKPR 222

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 26/204 (12%), Positives = 59/204 (28%), Gaps = 16/204 (7%)

Query: 15  PGPVHIPDQVIRAMNRNNEDYRSPA-VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAW 73
             P HI +    A+++    Y     +  L + + E +KK     +     I        
Sbjct: 38  DTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQ 97

Query: 74  ESALTNT--LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLA 131
              +  +  L  G+ ++       S  +             V +   +  +L+V    L 
Sbjct: 98  AFLMGLSAFLKDGEEVLIPTPAFVS--YAPAVILAGGKPVEVPTYEEDEFRLNVDE--LK 153

Query: 132 ADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVD---------GVSSICA 182
                  +A+ I      TG       + ++ D      L ++            +   +
Sbjct: 154 KYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYS 213

Query: 183 IDFRMDEWGIDVALTGSQKALSLP 206
           I      +   + + G  K  ++ 
Sbjct: 214 IASLDGMFERTITVNGFSKTFAMT 237

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	401
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	100.0
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	100.0
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	100.0
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	100.0
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	100.0
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	100.0
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	100.0
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	100.0
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	100.0
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	100.0
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	100.0
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	100.0
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	100.0
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	100.0
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	100.0
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	100.0
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	100.0
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	100.0
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.98
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.97
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.97
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.97
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.97
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.97
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.96
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.96
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.96
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.96
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.96
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.96
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.96
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.96
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.96
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.96
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.96
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.96
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.95
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.95
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.95
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.94
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.93
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.93
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.92
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.92
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.92
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.92
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.92
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.91
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.91
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.91
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.9
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.9
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.9
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.89
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.89
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.89
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.88
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.88
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.87
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.87
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.87
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.87
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.86
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.86
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.86
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.86
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.86
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.85
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.85
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.84
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.84
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.84
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.84
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.84
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.83
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.83
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.83
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.82
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.82
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.81
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.81
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.8
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.79
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.76
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.74
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	99.74
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	86.1
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	82.78

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-45  Score=343.17  Aligned_cols=367  Identities=28%  Similarity=0.376  Sum_probs=318.9

Q ss_pred             CCCCCCcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCC
Q 015729            4 MYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSP   83 (401)
Q Consensus         4 ~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~   83 (401)
                      +.-|.+ +||+|||++++++|++++.....+|++..+.+++.++++.+++++|.++++.+++++|||+|++.++.+++.+
T Consensus        15 ~~~~~~-~l~~pGP~~~~~~Vl~am~~~~i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~~~   93 (388)
T d1h0ca_          15 LSIPNQ-LLLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLEP   93 (388)
T ss_dssp             CCCCCC-EECSSSCCCCCHHHHHHHTCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCS
T ss_pred             cCCCcC-ccccCCCCCCCHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhhcc
Confidence            445554 8999999999999999999988889999999999999999999999987777999999999999999999999


Q ss_pred             CCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHh
Q 015729           84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLL  163 (401)
Q Consensus        84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~  163 (401)
                      |+++++...++++..+...+...+..+..+..+....+|.+++++.+..   .+++++++++.+|.+|.+.|+++|.++|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~n~tG~i~pi~~i~~~~  170 (388)
T d1h0ca_          94 GDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQ---HKPVLLFLTHGESSTGVLQPLDGFGELC  170 (388)
T ss_dssp             SCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCTTCCCCHHHHHHHHHH---HCCSEEEEESEETTTTEECCCTTHHHHH
T ss_pred             CCceeeecccceeeeeccccccccccccccccCCccccchHHHHHHhcc---CCcceEEEeeeeeccccccCHHHHHHHh
Confidence            9999999999999887777888888888888888888899999887765   3579999999999999999999999999


Q ss_pred             hhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCC--ccccchHHHHHH-
Q 015729          164 DEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV--RVFFDWKDYIKF-  240 (401)
Q Consensus       164 ~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-  240 (401)
                      ++  +|+++++|++|+.|..+++++.+++|++++|+||+++++.|+|+++.+++..+.+......  ..+.+....... 
T Consensus       171 ~~--~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (388)
T d1h0ca_         171 HR--YKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFW  248 (388)
T ss_dssp             HT--TTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHT
T ss_pred             hc--ccccceeccccccccccccccccccceecccccccccCCCceEEEeecHHHHHhhhhccccccccccccchhhhhh
Confidence            99  9999999999999999999999999999999999999999999999999998887654432  233444333332 


Q ss_pred             --hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCC
Q 015729          241 --YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHIN  318 (401)
Q Consensus       241 --~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  318 (401)
                        .....++.+|++...++++.++++.+.+.|++...++..++.+++++.+.++|+.....++..+++.++.|.+|++.+
T Consensus       249 ~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~p~~~~  328 (388)
T d1h0ca_         249 GCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYD  328 (388)
T ss_dssp             TCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCC
T ss_pred             hhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEECCCCCC
Confidence              122344577899999999999999999999999999999999999999999888777666666777788999998999


Q ss_pred             HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeec-ccCCHHHHHHHHHHHHHHHHhcCCC
Q 015729          319 SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHL-GHLNELQLLGCLAGVEMILKDVGYP  376 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~-~~~~~~di~~~~~~i~~~l~~~~~~  376 (401)
                      ..++...|.+++||.+..|..+..++.+|||+. .++|++|||+++++|+++|++++-+
T Consensus       329 ~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k~  387 (388)
T d1h0ca_         329 WRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKK  387 (388)
T ss_dssp             HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence            999999998888999999988778889999954 4678999999999999999998653

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2e-44  Score=333.44  Aligned_cols=347  Identities=24%  Similarity=0.389  Sum_probs=302.2

Q ss_pred             cccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEE
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIIS   89 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~   89 (401)
                      .|||+|||.++++.|++++.+...+|++..+.+.+.++++.++++++.++ +.+++++|||.|++.++.+++.+||++++
T Consensus         1 ~~L~~PGP~~v~~~V~~am~~~~~~hr~~~f~~i~~~~~~~l~~ll~~~~-~~i~~~gsgT~a~e~~~~nl~~~g~~vlv   79 (348)
T d1iuga_           1 DWLLTPGPVRLHPKALEALARPQLHHRTEAAREVFLKARGLLREAFRTEG-EVLILTGSGTLAMEALVKNLFAPGERVLV   79 (348)
T ss_dssp             CEECSSSSCCCCHHHHHHHHSCCCCTTSHHHHHHHHHHHHHHHHHHTCSS-EEEEEESCHHHHHHHHHHHHCCTTCEEEE
T ss_pred             CcccCCCCCCCCHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCCCC-CEEEEeCchHHHHHHHHHhccccccccee
Confidence            48999999999999999999988899999999999999999999999876 45888999999999999999999999999


Q ss_pred             EcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCC
Q 015729           90 FLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP  169 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~  169 (401)
                      +..|+|+..+...++..+.++..++.+.+..+++++.+   +    .+++.++++|.++.+|.+.|+++|.++|++++.+
T Consensus        80 ~~~G~f~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~---~----~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~  152 (348)
T d1iuga_          80 PVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVA---K----EGYAGLLLVHSETSTGALADLPALARAFKEKNPE  152 (348)
T ss_dssp             EECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSC---C----SSCSEEEEESEETTTTEECCHHHHHHHHHHHCTT
T ss_pred             ecchHHHHHHHHHHHhcCcccccccccCCCcccccccc---c----cCCCeeEEEecchhhhhhccHHHHHHHHHhhhcc
Confidence            99999999988999999999999998776656654421   1    4678999999999999999999999999997678


Q ss_pred             cEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCC
Q 015729          170 ALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPY  249 (401)
Q Consensus       170 ~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  249 (401)
                      +++++|+++++|..+++++.+++|++++|+||++.||+|+|++++++++++++.+   .+.++++..+.+..+.+ ++++
T Consensus       153 ~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~---~~~~~dl~~~~~~~~~~-~~~~  228 (348)
T d1iuga_         153 GLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKP---RGYYLDLARELKAQKEG-ESAW  228 (348)
T ss_dssp             CEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCC---CSSTTCHHHHHHHHTTT-CCSS
T ss_pred             ceeechhhhcccccccccccccCCEEEeccccceecCCceeeeeechHHHhhhcc---cccccchhhhhhhhccC-cccc
Confidence            9999999999999999999999999999999999999999999999999888764   35688888877776666 4688


Q ss_pred             CCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhh
Q 015729          250 TPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQR  329 (401)
Q Consensus       250 ~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  329 (401)
                      ||++..++++.++++.+.+.+ ++..++.+...+.+++.+++.|++....   .+++.++.+.+|++++..++.+.|.++
T Consensus       229 Tp~v~~i~~l~~aL~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gl~~~~~---~~s~~v~~~~~P~g~~~~~~~~~l~~~  304 (348)
T d1iuga_         229 TPAINLVLAVAAVLEEVLPRL-EEHLALKAWQNALLYGVGEEGGLRPVPK---RFSPAVAAFYLPEGVPYARVKEAFAQR  304 (348)
T ss_dssp             CCCHHHHHHHHHHHHHHGGGH-HHHHHHHHHHHHHHHHHHHHTTCEESCS---SBCTTCEEEECCTTCCHHHHHHHHHTT
T ss_pred             cccchHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhhhhhhccChh---hcCCeEEEEECCCCCCHHHHHHHHHHC
Confidence            999999999999999887664 4444554555556666666678887643   256778999999999999999999765


Q ss_pred             CCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          330 YNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       330 ~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                       ||.+.+|..+..++.+||++.++.+++|++.++++|+++|+++
T Consensus       305 -gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~  347 (348)
T d1iuga_         305 -GAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI  347 (348)
T ss_dssp             -TEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             -CeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence             9999999888888899999999999999999999999999875

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=100.00  E-value=2.9e-41  Score=318.68  Aligned_cols=361  Identities=25%  Similarity=0.407  Sum_probs=309.9

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEE
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRII   88 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl   88 (401)
                      +.+||+|||+.+++.|++|+.+...+|++..+.+.+.++++.|++++|.++.+.+++++|||.+++.++.+++.+|++++
T Consensus        17 ~~~l~~PGP~~~~~~V~~Am~~~~~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl   96 (388)
T d2ch1a1          17 EKIMMGPGPSNCSKRVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVL   96 (388)
T ss_dssp             CCBCCSSSSCCCCHHHHHHTTSCCCCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEE
T ss_pred             cceeeeCCCCCCCHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhcccccccc
Confidence            45999999999999999999998888999999999999999999999998766677889999999999999999999999


Q ss_pred             EEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCC
Q 015729           89 SFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRH  168 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~  168 (401)
                      ++..++++..+...++..+...+.+...+....+.+..++....   ++++++++++.+|.+|...|+++|.++|++  +
T Consensus        97 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~t~tG~~~~~~~i~~~~~~--~  171 (388)
T d2ch1a1          97 IAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIEL---HQPKCLFLTHGDSSSGLLQPLEGVGQICHQ--H  171 (388)
T ss_dssp             EEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHH---HCCSEEEEESEETTTTEECCCTTHHHHHHH--T
T ss_pred             ccccccccccchhhhhhhcccccccccccccccchhhhhhhhcc---CCcceeeeeecccccccccchhhhcchhcc--c
Confidence            99999999887788888899999999888777888888777654   457999999999999999999999999999  9


Q ss_pred             CcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCC--ccccchHHHHHHhh---c
Q 015729          169 PALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV--RVFFDWKDYIKFYN---L  243 (401)
Q Consensus       169 ~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~  243 (401)
                      |+++++|+++++|..++|++++++|++++|.||++++++|+|+++.+++..+........  ..+.++......+.   .
T Consensus       172 ~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (388)
T d2ch1a1         172 DCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDE  251 (388)
T ss_dssp             TCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSS
T ss_pred             cceeeeeeeecccccccchhccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCccccccccchhhhhhhccccc
Confidence            999999999999999999999999999999999999999999999999998876654332  33333333333222   2


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHH
Q 015729          244 GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIV  323 (401)
Q Consensus       244 g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  323 (401)
                      ...++++++...+.++..+++.....+.....++...........+...+......++..+++.++.|.+|++++..++.
T Consensus       252 ~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p~g~~~~~l~  331 (388)
T d2ch1a1         252 PKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVDWWKVS  331 (388)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCHHHHH
T ss_pred             ccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCCeEEEEECCCCCCHHHHH
Confidence            33467889999999999999988888877788888888777888887776666665666678889999999999999999


Q ss_pred             HHHHhhCCeEEccCCCCCCCcEEEEeecc-cCCHHHHHHHHHHHHHHHHhcC
Q 015729          324 RRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       324 ~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~-~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      ..|.+++||.+..|..+..++.||||+.+ +.|+|||++++++|+++|+..+
T Consensus       332 ~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~  383 (388)
T d2ch1a1         332 QYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH  383 (388)
T ss_dssp             HHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhhC
Confidence            99988889999999887788899999655 4579999999999999998754

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=100.00  E-value=2e-40  Score=311.58  Aligned_cols=357  Identities=29%  Similarity=0.465  Sum_probs=304.7

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEE
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRII   88 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl   88 (401)
                      +.+||+|||++++++|++++.....+|++..+.+.+.++++.+++++|.++++.+++++|||.+++.++.+++.++++++
T Consensus        18 ~~~l~~PGP~~v~~~Vl~am~~~~~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~   97 (377)
T d1vjoa_          18 SRLLLGPGPSNAHPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVL   97 (377)
T ss_dssp             CCEECSSSCCCCCHHHHHHHSSCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEE
T ss_pred             cceeecCCCCCCCHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhccccccccc
Confidence            56999999999999999999998889999999999999999999999998777788999999999999999999999999


Q ss_pred             EEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCC
Q 015729           89 SFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRH  168 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~  168 (401)
                      +...++++..+...+...+.....+..+.+...+.+..+....+   ++++++.+++.+|.||.+.|+++|.++|++  +
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~tg~~~~i~~i~~~~~~--~  172 (377)
T d1vjoa_          98 IGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALET---HRPAILALVHAETSTGARQPLEGVGELCRE--F  172 (377)
T ss_dssp             EEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH---HCCSEEEEESEETTTTEECCCTTHHHHHHH--H
T ss_pred             eeeechhhhhhhhhhhhhcccccccccCCCCcccchhhhhhhhc---Ccceeeeeeeeeccceeeechhhhhhhhhh--c
Confidence            99999888777777788888888887777666677766665554   356899999999999999999999999999  9


Q ss_pred             CcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCcc--ccchHHHHHHhhcCCC
Q 015729          169 PALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV--FFDWKDYIKFYNLGTF  246 (401)
Q Consensus       169 ~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~  246 (401)
                      |.++++|++|++|..+++++.+++|++++|.||+++|++|+|+++.+++.++..........  +..............+
T Consensus       173 g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (377)
T d1vjoa_         173 GTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERV  252 (377)
T ss_dssp             TCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCC
T ss_pred             cceEEEecchhhhhhhhcccccccceeeecccccccCCCEEEEecchhhHHhhhhccCCCCcceeeccchhhhccCcccc
Confidence            99999999999999999999999999999999999999999999999999887766544322  2223322333333445


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHH
Q 015729          247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRA  326 (401)
Q Consensus       247 ~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  326 (401)
                      +..+++...+..+.++.......|.+...++.++..+++++.+.+.++..... +..+++.++.|.+|++++..++.+.|
T Consensus       253 ~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~rs~~v~~~~~p~~~~~~~l~~~L  331 (377)
T d1vjoa_         253 YHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVE-KEYRLPTLTTVCIPDGVDGKAVARRL  331 (377)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSC-GGGBCSSEEEEECCTTCCHHHHHHHH
T ss_pred             cccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCceeecC-hHhcCCeEEEEECCCCCCHHHHHHHH
Confidence            56678887778888888888888899999999999999999999988777654 34467788889998889999999999


Q ss_pred             HhhCCeEEccCCCCCCCcEEEEeecc-cCCHHHHHHHHHHHHHHHH
Q 015729          327 WQRYNLSLGLGLNKVAGKVFRIGHLG-HLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       327 ~~~~~i~v~~g~~~~~~~~~Ri~~~~-~~~~~di~~~~~~i~~~l~  371 (401)
                      .+++||.+..|..+..++.+|||+.+ +.++||||+++++|+++|+
T Consensus       332 ~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~  377 (377)
T d1vjoa_         332 LNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR  377 (377)
T ss_dssp             HHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             HhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence            88889999999888778899999755 5679999999999999874

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.3e-39  Score=304.16  Aligned_cols=352  Identities=20%  Similarity=0.309  Sum_probs=282.8

Q ss_pred             ccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCce-EEecCChhHHHHHHHhccCCCCCeEEE
Q 015729           11 HLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTP-FLIPTTGTGAWESALTNTLSPGDRIIS   89 (401)
Q Consensus        11 ~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~-i~~~~g~t~a~~~~~~~~~~~gd~vl~   89 (401)
                      .||+|||.+++++|++++.+...+|++..+.+.++++++.+++++|.++++. +++++|+|++++.++.++..+++++++
T Consensus         2 ~l~~pGP~~~~~~V~~A~~~~~~~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~   81 (361)
T d1m32a_           2 LLLTPGPLTTSRTVKEAMLFDSCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLI   81 (361)
T ss_dssp             EECSSSSCCCCHHHHHTTCCCCCTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEE
T ss_pred             ccccCCCCCCCHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhhhccccce
Confidence            4899999999999999999988788887788889999999999999987653 677889999999999999999999988


Q ss_pred             EcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCC
Q 015729           90 FLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHP  169 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~  169 (401)
                      ...++++..+.......+.+...+........+.+..+......  ++++++.+++.+|.||...|+++|.++|++  +|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~--~g  157 (361)
T d1m32a_          82 VSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNAD--PTISHIAMVHSETTTGMLNPIDEVGALAHR--YG  157 (361)
T ss_dssp             EESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHC--TTCCEEEEESEETTTTEECCHHHHHHHHHH--HT
T ss_pred             eeehhhhhhHHHHhhhhhcccccccccccCCccchhhHHHHHhc--cCccceEEEeeecccccchhhhhhhhhhcc--cc
Confidence            88877776655566667777777776665544443333322222  478999999999999999999999999999  99


Q ss_pred             cEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHH-HHHhhcCCCCC
Q 015729          170 ALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDY-IKFYNLGTFWP  248 (401)
Q Consensus       170 ~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~  248 (401)
                      +++++|++|+.|..++|.+++++|++++|+|||++||+|+|+++++++..++..+............. ..... ...+.
T Consensus       158 ~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  236 (361)
T d1m32a_         158 KTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDN-HGKWR  236 (361)
T ss_dssp             CEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHT-TTCCS
T ss_pred             eeeEeecccccCcccccccccccceEEeeecccccCCCCceEEEechhhhhhhccccccccccchhhhcccccc-ccccC
Confidence            99999999999999999999999999999999999999999999999998887765443222211111 11122 22456


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCC--CCHHHHHHH
Q 015729          249 YTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH--INSSEIVRR  325 (401)
Q Consensus       249 ~~~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~  325 (401)
                      ++++...++++..++.....++ .+...++.....+.+.+.++..|.....+ ++.+++.++.|.+|++  .+..++.+.
T Consensus       237 ~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~~rs~~v~~~~~p~~~~~~~~~~~~~  315 (361)
T d1m32a_         237 FTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLD-DELHSPIITAFYSPEDPQYRFSEFYRR  315 (361)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSC-GGGBCSSEEEEECCCCTTCCHHHHHHH
T ss_pred             CCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcccCC-hhhcCCcEEEEECCCCCCCCHHHHHHH
Confidence            7889988899899998887776 55666777888888999998888776554 3446777888888754  567889999


Q ss_pred             HHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          326 AWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       326 L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      |.++ ||.+..|... .++.+|||+.++++++||++++++|+++|
T Consensus       316 l~~~-gi~i~~G~~~-~~~~~Ris~~g~~~~~di~~lv~al~~~L  358 (361)
T d1m32a_         316 LKEQ-GFVIYPGKVS-QSDCFRIGNIGEVYAADITALLTAIRTAM  358 (361)
T ss_dssp             HHHT-TEECEECCCS-SSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred             HHHC-CcEEECCCcC-CCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence            9877 9998877543 46789999887899999999999999885

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-39  Score=305.69  Aligned_cols=358  Identities=25%  Similarity=0.433  Sum_probs=291.1

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCC---CCceEEecCChhHHHHHHHhccC---C
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTT---SGTPFLIPTTGTGAWESALTNTL---S   82 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~---~~~~i~~~~g~t~a~~~~~~~~~---~   82 (401)
                      ...||+|||++++++|++||..+...|+++.+.+.+.++++.++++++..   ..+.++|++|+|++++.++.+++   +
T Consensus         3 ~~~l~~PGP~~v~~~V~~Am~~~~~~hr~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~   82 (382)
T d2bkwa1           3 VDTLLIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKA   82 (382)
T ss_dssp             CCEECSSSSCCCCHHHHHTTSCCCCCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTC
T ss_pred             cccccCCCCCCCCHHHHHHhCcccCCCCcHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcC
Confidence            46799999999999999999988888999999999999999999999863   44558999999999999998865   6


Q ss_pred             CCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC-CCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHH
Q 015729           83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES-DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRK  161 (401)
Q Consensus        83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~  161 (401)
                      +||+|+++..++++..+...++..+.....+.. +.+...+.+.+++.+.+   .+++++++++.+|.||...|++++.+
T Consensus        83 ~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~tg~~~~~~~~~~  159 (382)
T d2bkwa1          83 PNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ---NSYGAVTVTHVDTSTAVLSDLKAISQ  159 (382)
T ss_dssp             SCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH---SCCSEEEEESEETTTTEECCHHHHHH
T ss_pred             CCCceEEEEechhhhhhhhhccccccccccccccCCCCccchhHHHHHhhh---ccchheeeeeccccccccccchhhhh
Confidence            899999999999998877778888888887764 44456788888888775   45799999999999999999999999


Q ss_pred             HhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCC----CccccchHHH
Q 015729          162 LLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS----VRVFFDWKDY  237 (401)
Q Consensus       162 l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~----~~~~~~~~~~  237 (401)
                      .|+++.+++++++|+++++|..++|++++++|++++|+||+++||+|+|++++++++++++.....    ..++.+....
T Consensus       160 ~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (382)
T d2bkwa1         160 AIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRW  239 (382)
T ss_dssp             HHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHH
T ss_pred             hccccccceeeeeecccccccccccccccCeeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhh
Confidence            999877889999999999999999999999999999999999999999999999999887654321    2223333322


Q ss_pred             H---H-HhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccC-CCccCCceeEEE
Q 015729          238 I---K-FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQ-KEEWFSDTVTAV  311 (401)
Q Consensus       238 ~---~-~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~~  311 (401)
                      .   . ......++++|++...++++.++++.+.++|++++.++.+++++++++.+.+. +...... .....++.++.+
T Consensus       240 ~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~  319 (382)
T d2bkwa1         240 TPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAV  319 (382)
T ss_dssp             HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEE
T ss_pred             hhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEE
Confidence            2   2 22223356889999999999999999999999999999999999999999874 5444432 223355667778


Q ss_pred             EcCCCCCHHHHHHHHHhhCCeEEccCCCC-CCCcEEEEeecccC-CHHHHHHHHHHHHHHHHhc
Q 015729          312 IVPSHINSSEIVRRAWQRYNLSLGLGLNK-VAGKVFRIGHLGHL-NELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       312 ~~~~~~~~~~l~~~L~~~~~i~v~~g~~~-~~~~~~Ri~~~~~~-~~~di~~~~~~i~~~l~~~  373 (401)
                      ..|   +..++.+.|.+ +||.+..|..+ ..++.+|||+.++. +++|++.+++.|+.+...+
T Consensus       320 ~~~---~~~~~~~~L~~-~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L  379 (382)
T d2bkwa1         320 YVA---DPPDVIAFLKS-HGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLAL  379 (382)
T ss_dssp             ECS---CHHHHHHHHHH-TTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHT
T ss_pred             cCC---CHHHHHHHHHH-CCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            876   46788888865 59999999764 45678999976644 5777888888886655444

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-39  Score=308.22  Aligned_cols=348  Identities=18%  Similarity=0.184  Sum_probs=286.4

Q ss_pred             cccccCCCcCChHHHHHHHccCc-----CCCCCc-----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNN-----EDYRSP-----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN   79 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~-----~~~~~~-----~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~   79 (401)
                      .||+.++.+++|+.|++++.++.     +.+++.     ...+.++++|+.+++++|...++.+++++|+|++++.++.+
T Consensus        24 iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~  103 (405)
T d1jf9a_          24 AYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANS  103 (405)
T ss_dssp             EECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHH
T ss_pred             EEEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhc
Confidence            79999999999999999988743     222221     12356889999999999987666699999999999877654


Q ss_pred             ----cCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc
Q 015729           80 ----TLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        80 ----~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~  153 (401)
                          .+.+||+|++...+|++..  |..+++..|++++.++.+.++.+|++.++++++    ++++++++++.+|.+|.+
T Consensus       104 ~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i~----~~t~lv~~~~v~~~tG~~  179 (405)
T d1jf9a_         104 WGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFD----EKTRLLAITHVSNVLGTE  179 (405)
T ss_dssp             HHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCC----TTEEEEEEESBCTTTCCB
T ss_pred             ccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcCCHHHHHHhcc----CCcEEEEEecCCCccccc
Confidence                4689999999999999976  778888999999999999999999999999887    467999999999999999


Q ss_pred             cchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccc--
Q 015729          154 NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF--  231 (401)
Q Consensus       154 ~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~--  231 (401)
                      .|+++|.++|++  +|+++++|++|+.|..++|..+.++|++++|+|||+ ||.|+|+++++++..+.+.+.......  
T Consensus       180 ~pi~~i~~~~~~--~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~-Gp~G~g~l~v~~~~~~~~~~~~~~~~~~~  256 (405)
T d1jf9a_         180 NPLAEMITLAHQ--HGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLY-GPTGIGILYVKEALLQEMPPWEGGGSMIA  256 (405)
T ss_dssp             CCHHHHHHHHHH--TTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTT-SCSSCEEEEECHHHHTTCCCSSCSSSSEE
T ss_pred             CchHHhhhHHHH--cCCeeecccceeccccccchhhcCCceeeccccccc-cCCCceeeeechhhhcccCcccccccccC
Confidence            999999999999  999999999999999999999999999999999996 799999999999998876654321110  


Q ss_pred             -------cchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCc-cccCCCcc
Q 015729          232 -------FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK-NCTQKEEW  303 (401)
Q Consensus       232 -------~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~~~~~  303 (401)
                             ..+.....+++.|     |++...++++.++++++.+.|++++.++...+.+++.+.++.++.. ...+.  .
T Consensus       257 ~~~~~~~~~~~~~~~r~e~G-----T~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~--~  329 (405)
T d1jf9a_         257 TVSLSEGTTWTKAPWRFEAG-----TPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ--N  329 (405)
T ss_dssp             ECCTTTCCEECCTTGGGCCS-----SCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCT--T
T ss_pred             ccccccccccccchhhhcCC-----CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCCcccccCCc--C
Confidence                   0111223445555     5999999999999999999999999999999999999999887433 33322  2


Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC--------CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          304 FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK--------VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~--------~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      +. .++.|.+| +.+..++...|.+ +||.++.|..+        ...+.+|||++.++|++|||+++++|+++++.+|
T Consensus       330 r~-~ivsf~~~-~~~~~~~~~~L~~-~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~~~  405 (405)
T d1jf9a_         330 RL-GVIAFNLG-KHHAYDVGSFLDN-YGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLLG  405 (405)
T ss_dssp             CC-SEEEEEET-TCCHHHHHHHHHH-TTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             cC-cEEEEEcC-CCCHHHHHHHHHH-CCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcC
Confidence            33 47778884 5678888888854 59999877543        1246799999999999999999999999998765

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=100.00  E-value=4.4e-38  Score=298.10  Aligned_cols=350  Identities=18%  Similarity=0.186  Sum_probs=287.2

Q ss_pred             cccccCCCcCChHHHHHHHccCcC-----CCCC-cc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNE-----DYRS-PA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN   79 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~-----~~~~-~~----~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~   79 (401)
                      +||+.++.+++++.|++++.+...     .+.+ ..    ..+.++++|+.+++++|.+.++.+++++|++++++.++.+
T Consensus        24 iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~  103 (408)
T d1t3ia_          24 VYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYS  103 (408)
T ss_dssp             EECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHH
T ss_pred             EEeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhh
Confidence            799999999999999999877331     1222 12    2367889999999999998767699999999999887654


Q ss_pred             ----cCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc
Q 015729           80 ----TLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        80 ----~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~  153 (401)
                          .+++|++|++.+.+|++..  |...++..|++++.++.+..+..+.+.++++++    ++++++.+++.+|.+|.+
T Consensus       104 ~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~~----~~t~lv~i~~~~~~tG~~  179 (408)
T d1t3ia_         104 WGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLS----EKTKLVTVVHISNTLGCV  179 (408)
T ss_dssp             THHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCC----TTEEEEEEESBCTTTCBB
T ss_pred             ccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccHHHhhhccC----CCceEEEEeccccccccc
Confidence                4689999999999999876  666778889999999998888889999999887    467999999999999999


Q ss_pred             cchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccc--
Q 015729          154 NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVF--  231 (401)
Q Consensus       154 ~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~--  231 (401)
                      .|+++|.++|++  +|+++++|++|+.|..++|+.++++|++++|+|||+ ||.|+|+++++++......+.......  
T Consensus       180 ~p~~~i~~~~~~--~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~-gp~G~g~l~v~~~~~~~~~p~~~g~~~~~  256 (408)
T d1t3ia_         180 NPAEEIAQLAHQ--AGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMC-APTGIGFLYGKEEILEAMPPFFGGGEMIA  256 (408)
T ss_dssp             CCHHHHHHHHHH--TTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTT-SCTTCEEEEECHHHHHHSCCCSCSTTSEE
T ss_pred             CcHHHHhhhhhc--cCceeeeccceecccccccccccCCceEEecccccc-CCCCccccccchhhhhcCCceecCCcccc
Confidence            999999999999  999999999999999999999999999999999985 799999999999998777654432111  


Q ss_pred             ------cchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc-c
Q 015729          232 ------FDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE-W  303 (401)
Q Consensus       232 ------~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~  303 (401)
                            ..+.....+++.|     |++...++++.++++++.+.|++++.++..++.+++.+.+.+. ++.+..+... .
T Consensus       257 ~~~~~~~~~~~~~~r~e~G-----t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  331 (408)
T d1t3ia_         257 EVFFDHFTTGELPHKFEAG-----TPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHG  331 (408)
T ss_dssp             EECSSCEEECCTTGGGCCS-----SCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGS
T ss_pred             cccccccccCCchhhhcCC-----cHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCccccccCCCcccc
Confidence                  0111223455656     4999999999999999999999999999999999999999887 6666543321 2


Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC--------CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          304 FSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV--------AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~--------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ....++.|.+ .+.+..++.+.|.+ .||.++.|..+.        .++.+|||++.++|++|||+++++|+++++-+
T Consensus       332 ~~~~iv~f~~-~~~~~~~v~~~L~~-~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~f  407 (408)
T d1t3ia_         332 DRAALASFNV-AGLHASDVATMVDQ-DGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF  407 (408)
T ss_dssp             CBCSEEEEEE-TTBCHHHHHHHHHT-TTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CcceEEEEEe-CCCCHHHHHHHHhh-CCcEEecCcccccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3345777888 56788899998865 599998875531        24579999999999999999999999998754

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=100.00  E-value=1.6e-38  Score=299.08  Aligned_cols=352  Identities=16%  Similarity=0.127  Sum_probs=276.5

Q ss_pred             CCCCCCCCcccccCCCcCChHHHHHHHccCcC-----CCCC----ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHH
Q 015729            2 DYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNE-----DYRS----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGA   72 (401)
Q Consensus         2 ~~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~-----~~~~----~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a   72 (401)
                      +|+.--+.+|++.++.++.|+.|++++.+...     ....    ......+.++|+.+++++|.++.+ +++++|+|+|
T Consensus         1 ~fp~l~~~~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~-i~~~~g~t~a   79 (381)
T d1elua_           1 QFPGLANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNT-ITITDNVTTG   79 (381)
T ss_dssp             CCGGGTTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGG-EEEESSHHHH
T ss_pred             CCCCCCCCEEeeCCcccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCccc-EEEECChHHH
Confidence            46666678999999999999999999877432     1122    223455778999999999997655 9999999999


Q ss_pred             HHHHHhcc-CCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCC--hHHHHHHHhccCCCCceEEEEEecC
Q 015729           73 WESALTNT-LSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAK--LDVLASKLAADTAHTIKAICIVHNE  147 (401)
Q Consensus        73 ~~~~~~~~-~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d--~~~le~~~~~~~~~~~~~i~~~~~~  147 (401)
                      ++.++.++ +++||+|++++.+|++..  |..+.+..|++++.++.+.....+  .+.+++.++    ++++++++++++
T Consensus        80 ~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~----~~t~~v~i~~~~  155 (381)
T d1elua_          80 CDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG----PKTRLVILSHLL  155 (381)
T ss_dssp             HHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC----TTEEEEEEESBC
T ss_pred             hhhcchhhhhcCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhc----cccccccccccc
Confidence            99998886 789999999999988865  566778889999999876543222  334444444    578999999999


Q ss_pred             CCcccccchHHHHHHhhhcC--CCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccC
Q 015729          148 TATGVTNNLSKVRKLLDEYR--HPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTA  225 (401)
Q Consensus       148 n~tG~~~~l~~i~~l~~~~~--~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~  225 (401)
                      |+||.+.|+++|.++|++|.  +++++++|++|+.|..+++..+.++|++++|+|||+++|.|+|+++++++..+++.+.
T Consensus       156 n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~~~~~p~  235 (381)
T d1elua_         156 WNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPT  235 (381)
T ss_dssp             TTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCC
T ss_pred             ccccccchhhHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccchhhHHHhhHHHHHhcCcc
Confidence            99999999999999999843  5799999999999999999999999999999999999999999999999988777654


Q ss_pred             CCCcccc---------chHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcH-HHHHHHHHHHHHHHHHHHHHc-CC
Q 015729          226 KSVRVFF---------DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGL-ENVIERHRRLGKATRLAVEAW-GL  294 (401)
Q Consensus       226 ~~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~-~~~~~~~~~~~~~l~~~L~~~-g~  294 (401)
                      .......         .+.....++.     .++++...++++.++++.+...|. +...++..++.+++.+.|+++ |+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~  310 (381)
T d1elua_         236 YVGWRSITYGAKGEPTGWAEGGKRFE-----VATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHV  310 (381)
T ss_dssp             SCCTTTEEECTTSCEEEECSGGGGGC-----CSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTE
T ss_pred             cccccccccccccccccccccccccc-----cccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcCCCe
Confidence            3221100         0111112233     346999999999999999988874 555688889999999999997 88


Q ss_pred             ccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          295 KNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      ++..+..+ ++ .+++|.++...+.+++.+.|.++ ||.++...   .++++|+|++.++|++|+|+++++|++.
T Consensus       311 ~~~~~~~~-~~-~~vsf~~~~~~~~~~i~~~L~~~-gi~v~~~~---~~~~lRis~~~~nt~edid~ll~~l~e~  379 (381)
T d1elua_         311 HCLATSAP-QA-GLVSFTVDSPLGHRAIVQKLEEQ-RIYLRTIA---DPDCIRACCHYITDEEEINHLLARLADF  379 (381)
T ss_dssp             EESCSSCC-SS-SEEEEEECSSSCHHHHHHHHHHT-TEECEEET---TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred             EecCCCCc-cc-cEEEEEcCCCCCHHHHHHHHHhC-CcEEEecC---CCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            88765433 34 36778776556778898888766 99876432   2578999998889999999999998763

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.1e-36  Score=281.00  Aligned_cols=340  Identities=14%  Similarity=0.125  Sum_probs=261.0

Q ss_pred             cccccCCCcCChHHHHHHHccCcCCC-------CCc-----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHH
Q 015729           10 NHLFVPGPVHIPDQVIRAMNRNNEDY-------RSP-----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESAL   77 (401)
Q Consensus        10 ~~~~~~~p~~~~~~v~~a~~~~~~~~-------~~~-----~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~   77 (401)
                      .||+.++.++++++|+|++.+.....       ...     ...+.++++|+.+++++|.++.+ |++++|+|++++.++
T Consensus         4 iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~-I~~~~~~t~~l~~~~   82 (391)
T d1p3wa_           4 IYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPRE-IVFTSGATESDNLAI   82 (391)
T ss_dssp             EECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGG-EEEESSHHHHHHHHH
T ss_pred             EEeeCccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCc-EEEECCHHHHHHHHH
Confidence            59999999999999999998864321       111     12456788999999999998755 999999999998877


Q ss_pred             hcc----CCCCCeEEEEcCCcchHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCccc
Q 015729           78 TNT----LSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGV  152 (401)
Q Consensus        78 ~~~----~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~  152 (401)
                      .++    +++||+|++.++.|++.. +...++..|++++.++.+.++.+|+++++++++    ++|++|++++++|+||.
T Consensus        83 ~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~----~~T~lv~is~~~n~tG~  158 (391)
T d1p3wa_          83 KGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMR----DDTILVSIMHVNNEIGV  158 (391)
T ss_dssp             HHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCC----TTEEEEECCSBCTTTCC
T ss_pred             hhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCCCeEcHHHHHHhCC----CCcEEEEEECCCCCCee
Confidence            653    689999999999888876 334566789999999999888899999999997    46799999999999999


Q ss_pred             ccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCcccc
Q 015729          153 TNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF  232 (401)
Q Consensus       153 ~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~  232 (401)
                      +.|+++|.++|++  +|+++++|++|+.|..++|....++|++++|.|||+ |+.|+|+++++++......+........
T Consensus       159 ~~~~~~I~~~~~~--~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~-g~~g~g~~~~~~~~~~~~~~~~~gg~~~  235 (391)
T d1p3wa_         159 VQDIAAIGEMCRA--RGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIY-GPKGIGALYVRRKPRVRIEAQMHGGGHE  235 (391)
T ss_dssp             BCCHHHHHHHHHH--HTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTT-SCSSCEEEEECBTTBCCCCCSSCSSCTT
T ss_pred             ECCHHHHHHHhcc--CCcEEEEeeccccCCccccchhcccccccccccccc-CCCceEEEEEecchhcccCCcccCCccc
Confidence            9999999999999  999999999999999999999999999999999997 7889999999998755554432211110


Q ss_pred             chHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEE
Q 015729          233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVI  312 (401)
Q Consensus       233 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~  312 (401)
                            ..     ...++.+....+++..+++...+. .....++..++.+++.+.|.+++..........+.+.++.+.
T Consensus       236 ------~~-----~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~  303 (391)
T d1p3wa_         236 ------RG-----MRSGTLPVHQIVGMGEAYRIAKEE-MATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVS  303 (391)
T ss_dssp             ------TT-----TSCSCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEE
T ss_pred             ------cC-----cccCcchhhhhhhhhhhhhHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEE
Confidence                  11     223346666666666666655543 345566777788888888877633333222233455667777


Q ss_pred             cCCCCCHHHHHHHHHhhCCeEEccCCCCC-------------------CCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          313 VPSHINSSEIVRRAWQRYNLSLGLGLNKV-------------------AGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       313 ~~~~~~~~~l~~~L~~~~~i~v~~g~~~~-------------------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      + .+.+..++...|.   ++.++.|..+.                   .++.+|||++.++|++|+|+++++|+++++++
T Consensus       304 ~-~~~~~~~~~~~l~---~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~l  379 (391)
T d1p3wa_         304 F-NYVEGESLIMALK---DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRL  379 (391)
T ss_dssp             E-TTSCHHHHHHHTT---TEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             e-CCCChHHHHHHhC---CCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence            7 4567777777663   66666553211                   12469999999999999999999999998765

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8.5e-34  Score=266.02  Aligned_cols=342  Identities=16%  Similarity=0.135  Sum_probs=255.8

Q ss_pred             CCcccccCCCcCChHHHHHHHccCcCCC-----CCc----cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            8 GKNHLFVPGPVHIPDQVIRAMNRNNEDY-----RSP----AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         8 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~-----~~~----~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      ++.||+.+|.+++|+.|+|++.+.....     ...    ...+.+.++|+++++++|.++++ +++++|+|+++..++.
T Consensus         1 ~~iyld~a~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~-i~~~~~~T~~l~~~~~   79 (376)
T d1eg5a_           1 MRVYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSE-IFFTSCATESINWILK   79 (376)
T ss_dssp             CCEECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGG-EEEESCHHHHHHHHHH
T ss_pred             CEEEEECcccccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCc-EEEECCHHHHHHhhhh
Confidence            4789999999999999999987744321     111    13456778999999999998755 9999999999988774


Q ss_pred             c----cCCCCCeEEEEcCCcchHH-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc
Q 015729           79 N----TLSPGDRIISFLIGQFSLL-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        79 ~----~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~  153 (401)
                      +    ...+|+.|++....+++.. +...++..|++++.+|++.++.+|++++++++++    +++++++++++|+||..
T Consensus        80 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~~----~t~lv~is~v~~~tG~~  155 (376)
T d1eg5a_          80 TVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE----DTFLVSIMAANNEVGTI  155 (376)
T ss_dssp             HHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT----TEEEEEEESBCTTTCBB
T ss_pred             cccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCCCeECHHHHHHhcCC----CceEEEEECCcccccee
Confidence            3    4677777777776555544 4566777899999999999999999999999974    67999999999999999


Q ss_pred             cchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccc
Q 015729          154 NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD  233 (401)
Q Consensus       154 ~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~  233 (401)
                      .|++++.++++.++.++++++|++|+.|..++++.+.++|++++|+|||+ ||+|+|+++++++.  .+.+........ 
T Consensus       156 ~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~-gp~G~~~l~~~~~~--~~~p~~~g~~~~-  231 (376)
T d1eg5a_         156 QPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFH-GPKGVGITYIRKGV--PIRPLIHGGGQE-  231 (376)
T ss_dssp             CCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGT-SCTTCEEEEECTTS--CCCCSBCSSCTT-
T ss_pred             eeehhhhhhhhhcccCceeEEEeeeccccccccccccCccceecccceee-cCCCceeEEeccCc--ccCCcccCCCCc-
Confidence            99999999998866899999999999999999999999999999999996 79999999998863  222221111000 


Q ss_pred             hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEc
Q 015729          234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIV  313 (401)
Q Consensus       234 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~  313 (401)
                           ..+.     .++.+........++...... .............+++.+.|...+......... .......+.+
T Consensus       232 -----~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~  299 (376)
T d1eg5a_         232 -----RGLR-----SGTQNVPGIVGAARAMEIAVE-ELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEI-SLPNTLSVSF  299 (376)
T ss_dssp             -----TTTB-----CSCCCHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHTTTCEECSCTTS-BCTTEEEEEC
T ss_pred             -----cccc-----CCcccchhhhhHHHHhhcccc-chhhhhhhhhhhhhhhccccccccccccccccc-cccceeeecc
Confidence                 1122     234666655555555554433 345566666777777888887764444433322 2334666777


Q ss_pred             CCCCCHHHHHHHHHhhCCeEEccCCCCCC-------------------CcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          314 PSHINSSEIVRRAWQRYNLSLGLGLNKVA-------------------GKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       314 ~~~~~~~~l~~~L~~~~~i~v~~g~~~~~-------------------~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                       .+++..++...|.+ +||.++.|..+..                   ++.+|||++.++|++|||+++++|+++++-
T Consensus       300 -~~~~~~~~~~~L~~-~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~~  375 (376)
T d1eg5a_         300 -PNIRGSTLQNLLSG-YGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSF  375 (376)
T ss_dssp             -TTCCHHHHHHHHHH-TTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHhh-CCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence             45688888888754 5999987743211                   245999999999999999999999999863

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=100.00  E-value=3.7e-34  Score=267.04  Aligned_cols=346  Identities=16%  Similarity=0.157  Sum_probs=253.5

Q ss_pred             CCCcccccCCCcCChHHHHHHHccCcC------------CCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhH-HH
Q 015729            7 PGKNHLFVPGPVHIPDQVIRAMNRNNE------------DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG-AW   73 (401)
Q Consensus         7 ~~~~~~~~~~p~~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~-a~   73 (401)
                      .++.|||+|||+++|++|+++|.+...            .|+++.+.+++.++++.|+++++.++++.+++++|++. ++
T Consensus         1 ~~~~~~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~   80 (361)
T d2c0ra1           1 SERAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQF   80 (361)
T ss_dssp             CCCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHH
T ss_pred             CCCCcccCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHH
Confidence            368899999999999999999988652            37888999999999999999999987766777666654 45


Q ss_pred             HHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc
Q 015729           74 ESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        74 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~  153 (401)
                      ++++..+..+++++++...+.++..|...++..|.++..+..+.....+++++++.+..+     +   +.+.+|.||.+
T Consensus        81 ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~v~~~tg~~  152 (361)
T d2c0ra1          81 AMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQD-----N---AAYLHLTSNET  152 (361)
T ss_dssp             HHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCCT-----T---EEEEEEESEET
T ss_pred             HHHHhccccCCCceEEEeechhhhhhhhhhhhcCceeeeeccccccccchhhhhhhcccC-----c---ceEEEEecccc
Confidence            666677889999999999988888898999999999999998888778888887765532     2   23455789999


Q ss_pred             cchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccc
Q 015729          154 NNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFD  233 (401)
Q Consensus       154 ~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~  233 (401)
                      .++.+|.++|++  +|+++++|+++++|..+++.+++++|  +++.+|.++.+++.++++.++...+ ....  ...+..
T Consensus       153 ~~~~~i~~~~~~--~~al~~vDavss~g~~~id~~~~di~--~~s~~k~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~  225 (361)
T d2c0ra1         153 IEGAQFKAFPDT--GSVPLIGDMSSDILSRPFDLNQFGLV--YAGAQKNLGPSGVTVVIVREDLVAE-SPKH--LPTMLR  225 (361)
T ss_dssp             TTTEECSSCCCC--TTSCEEEECTTTTTSSCCCGGGCSEE--EEETTTTTCCSSCEEEEEEGGGSSS-CCTT--SCGGGC
T ss_pred             eecceEEEeecc--CCceEEEEeeccccccccccccceeE--EEecccccccccCcEEEEEhHHhhh-Cccc--cccccc
Confidence            999999999999  99999999999999999999876555  5566787765555555555554322 2111  122222


Q ss_pred             hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEE
Q 015729          234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAV  311 (401)
Q Consensus       234 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~  311 (401)
                      +........    ...+++.........+.......+ .....++.++....+....... ........++.+|+.++.+
T Consensus       226 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~  301 (361)
T d2c0ra1         226 YDTYVKNNS----LYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITF  301 (361)
T ss_dssp             HHHHHHTTT----CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEE
T ss_pred             ccccccccc----ccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEE
Confidence            322222211    122344444445555555444444 4455555556666666666554 3333333445567788999


Q ss_pred             EcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          312 IVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       312 ~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      .+|++.+..++.+.|.++ ||.+..|+.+.+  .||||++.+++.||+++++++|++..++-|
T Consensus       302 ~~~~~~~~~~~~~~L~~~-GI~~~~G~~~~g--~~RIs~~~~~~~edv~~Lv~~l~~~~~~~~  361 (361)
T d2c0ra1         302 RLASEELEKEFVKASEQE-GFVGLKGHRSVG--GLRASIYNAVPYESCEALVQFMEHFKRSRG  361 (361)
T ss_dssp             ECSCHHHHHHHHHHHHHT-TEESCBCCTTTC--SEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred             ECCCcccHHHHHHHHHHC-CCEEecCCCcCC--eEEEEecCCCCHHHHHHHHHHHHHHHHhcC
Confidence            998877788999999765 999999876543  399999999999999999999999877643

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.7e-33  Score=259.07  Aligned_cols=347  Identities=11%  Similarity=0.022  Sum_probs=256.1

Q ss_pred             CcccccCCCcCChHHHHHHHccCcC------------CCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNE------------DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA   76 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~   76 (401)
                      +.|||+|||..+|++|++++.+...            +|+++.+.+++.++++.|++++|.++++.+++++|+++++..+
T Consensus         1 ~~~nF~pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a   80 (360)
T d1bjna_           1 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAA   80 (360)
T ss_dssp             CCEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred             CeEEeCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhh
Confidence            4799999999999999999999653            4788899999999999999999998777788887777665554


Q ss_pred             -HhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc
Q 015729           77 -LTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN  155 (401)
Q Consensus        77 -~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~  155 (401)
                       ...+..+++.+++...++++..+...++..|..++....+.+...+.+.+++.+.    .+++++++.+.+|.||...+
T Consensus        81 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~v~~~~~~t~~~~~  156 (360)
T d1bjna_          81 VPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQ----LSDNAAYMHYCPNETIDGIA  156 (360)
T ss_dssp             HHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEETTEEEECCGGGCC----CCSSCSCEEECSEETTTTEE
T ss_pred             hhhcccccccccceecccchhhhhHHHHhhcCccceeeccccCCCcchhhhhhhhc----cCCceeEEEecccccccCcc
Confidence             4557788889988888777777778888888877777665555555555555544    45688888888999999988


Q ss_pred             hHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchH
Q 015729          156 LSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK  235 (401)
Q Consensus       156 l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~  235 (401)
                      ++.+.  ++.  +++++++|++++.+..+++..  ++|+.++|++|++++++|.++++.++...+....   ...+..+.
T Consensus       157 ~~~i~--~~~--~~~~v~vDa~~~~~~~~vd~~--~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  227 (360)
T d1bjna_         157 IDETP--DFG--ADVVVAADFSSTILSRPIDVS--RYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIA---CPSILDYS  227 (360)
T ss_dssp             CCCCC--CCC--TTCCEEEECTTTTTSSCCCGG--GCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTT---SCGGGCHH
T ss_pred             cccee--ccc--ccceeeeeeeccccceeeeec--cceeEEEEcccccccCCCceeEeeehhhhhcccc---CCcchhhH
Confidence            87653  344  888999999999887777655  5788999999999888888888887765332221   12222222


Q ss_pred             HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC
Q 015729          236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS  315 (401)
Q Consensus       236 ~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  315 (401)
                      .....   +..+..++......+...++......+.+...++..+....+.+.+...+.......+..++..+++|.+|+
T Consensus       228 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~  304 (360)
T d1bjna_         228 ILNDN---GSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLAD  304 (360)
T ss_dssp             HHHHT---TTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESS
T ss_pred             HHHhh---hhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEcCC
Confidence            22222   222233444444444444444444445666777777777777777777755555555555788899999998


Q ss_pred             CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          316 HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       316 ~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      +.+.+++...|.++ ||.+..|..+.  +.+|+|+..++|+|||++++++|++..++.|
T Consensus       305 ~~~~~~~~~~l~~~-Gi~~~~G~~~~--g~~Ris~~~~~t~edV~~li~~l~e~~~~~~  360 (360)
T d1bjna_         305 SALDKLFLEESFAA-GLHALKGHRVV--GGMRASIYNAMPLEGVKALTDFMVEFERRHG  360 (360)
T ss_dssp             GGGHHHHHHHHHHT-TEECCBCCTTT--CSEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHHHHC-CCEeecCCCcc--CeEEEEecCCCCHHHHHHHHHHHHHHHHHcC
Confidence            88888899988765 99998885443  2499999999999999999999999887654

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.5e-31  Score=251.70  Aligned_cols=326  Identities=15%  Similarity=0.108  Sum_probs=234.5

Q ss_pred             cCChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHhc------CCCCceEEecCChhHHHHHHHhccCCCCCeEEEE
Q 015729           18 VHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFK------TTSGTPFLIPTTGTGAWESALTNTLSPGDRIISF   90 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~g------~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   90 (401)
                      .++|+.+++++.+.... ..+|.......++|+.++++++      ..+++++++++|+++++..++.+++++||+|+++
T Consensus        37 ~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~  116 (388)
T d1gdea_          37 FDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIP  116 (388)
T ss_dssp             SCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEE
T ss_pred             CCCCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHhcCCCCEEEEC
Confidence            45677787777764322 2234444456678888887763      2344559999999999999999999999999999


Q ss_pred             cCCcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhh
Q 015729           91 LIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDE  165 (401)
Q Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~  165 (401)
                      +|.|+++.  ..++..|++++.++++.  ++.+|++++++.+++    +++++++++|+||||.+++   +++|.++|++
T Consensus       117 ~P~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~  190 (388)
T d1gdea_         117 TPAFVSYA--PAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD----KTRALIINSPCNPTGAVLTKKDLEEIADFVVE  190 (388)
T ss_dssp             ESCCTTHH--HHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             CCCcHHHH--HHHHHcCCEEEEeecccccCCCCCHHHHHHhCcc----CCeEEEECCCcCCCCCcCCHHHHHHHHHHHHH
Confidence            99877664  55788899999999865  347899999998863    6799999999999999996   5668888999


Q ss_pred             cCCCcEEEEecccccCcce-------eccC-cccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHH
Q 015729          166 YRHPALFLVDGVSSICAID-------FRMD-EWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKD  236 (401)
Q Consensus       166 ~~~~~~li~D~a~~~~~~~-------~~~~-~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~  236 (401)
                        ++++||+|++|......       .... .....+++.|.+|.++ .+..+|++++.++..+.+....          
T Consensus       191 --~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~~~~~~~~~~~~~----------  258 (388)
T d1gdea_         191 --HDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQ----------  258 (388)
T ss_dssp             --TTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHH----------
T ss_pred             --cCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEeeccchhhhhhcc----------
Confidence              99999999998754221       1111 1245788999999985 3345799999998876654321          


Q ss_pred             HHHHhhcCCCCCCCCcHHHHHHHHHHHHHHH-HhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC
Q 015729          237 YIKFYNLGTFWPYTPSIQLLYGLRAALDLIF-EEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS  315 (401)
Q Consensus       237 ~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~-~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  315 (401)
                           .   .+..+++.....++..++..-. ...+++..+++.+..+.+.+.|...+++...+    ..+.++|+++++
T Consensus       259 -----~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p----~gg~fl~~~l~~  326 (388)
T d1gdea_         259 -----M---YNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKP----KGAFYIFPRIRD  326 (388)
T ss_dssp             -----H---TTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC----CBTTEECCBCGG
T ss_pred             -----c---cccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhccccccCC----CceEEEEEECCC
Confidence                 0   0112233433333333442111 11245666777788888888888877776554    244577888864


Q ss_pred             -CCCHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          316 -HINSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       316 -~~~~~~l~~~L~~~~~i~v~~g~~--~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                       +.+..++++.|.+++||.+.||..  ....+++||++.  .+++++++++++|++++++..+
T Consensus       327 ~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~--~~~e~l~~al~rL~~~l~e~k~  387 (388)
T d1gdea_         327 TGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA--TAYEKLEEAMDRMERVLKERKL  387 (388)
T ss_dssp             GTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHhcCC
Confidence             568889999888777999999843  333578999875  4889999999999999987643

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=100.00  E-value=6.1e-32  Score=251.77  Aligned_cols=342  Identities=13%  Similarity=0.065  Sum_probs=248.2

Q ss_pred             CcccccCCCcCChHHHHHHHccCcC------------CCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNE------------DYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA   76 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~   76 (401)
                      +.|+|+|||+++|++|++++.+...            .||++.+.++++++|+.|+++++.++++.+++++|+++++..+
T Consensus         3 ~~~nF~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~   82 (360)
T d1w23a_           3 QVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTM   82 (360)
T ss_dssp             CCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred             ceeEeCCCCcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHH
Confidence            5799999999999999999998653            3788889999999999999999998877788888887776654


Q ss_pred             H-hccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc
Q 015729           77 L-TNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN  155 (401)
Q Consensus        77 ~-~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~  155 (401)
                      . ..+..+++.+++...++++..+...++..+...+..........+++.+++..        +...+++.+|.||.+.|
T Consensus        83 ~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~tg~~~~  154 (360)
T d1w23a_          83 LPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANSYQSIPDFSEFQ--------LNENDAYLHITSNNTIY  154 (360)
T ss_dssp             HHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGTSCSCCCGGGCC--------CCTTEEEEEEESEETTT
T ss_pred             HHhhhcccCcccceeeccchhhhhHHHHHHhhhcceeeccccccccchhhhhhcc--------cccccceeEecCCcccc
Confidence            4 55778889999999988888877888888887777765544333444443322        22234566778999999


Q ss_pred             hHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchH
Q 015729          156 LSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWK  235 (401)
Q Consensus       156 l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~  235 (401)
                      +++|.++|++  +|+++++|+++++|..++|++++++|++.++.+|++  ++|.|+++.++...+....   ...+..+.
T Consensus       155 ~~~i~~~~~~--~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~  227 (360)
T d1w23a_         155 GTQYQNFPEI--NHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGP--SGVTVVIVKKDLLNTKVEQ---VPTMLQYA  227 (360)
T ss_dssp             TEECSSCCCC--CSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSC--TTCEEEEEEHHHHCSCCTT---CCGGGCHH
T ss_pred             ceeeeecccc--ceeeEEeeccccccccccccccccceEEeecccccc--CCcceeeEechhhhccccc---CCcchhhh
Confidence            9999999999  999999999999999999999999999999988854  4555777766654332221   12222222


Q ss_pred             HHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEc
Q 015729          236 DYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEG-LENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIV  313 (401)
Q Consensus       236 ~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~  313 (401)
                      ......    .+..++......+...++......+ .....++............... ........+..+++++++|.+
T Consensus       228 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i  303 (360)
T d1w23a_         228 THIKSD----SLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNL  303 (360)
T ss_dssp             HHHHTT----TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEEC
T ss_pred             hhhhhh----hhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcceeEEEEEc
Confidence            222221    2234555555555555555555554 3344444444444444444443 444444455567788899999


Q ss_pred             CCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          314 PSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       314 ~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      |++.+.+++...|.++ ||.++.|+.+.  +.+|+|++.++|.||++++++.|++..+.
T Consensus       304 ~~~~~~~~~~~~l~~~-GI~~~~G~~~~--ggiRiS~~~~~t~e~V~~Li~~~~~~~~~  359 (360)
T d1w23a_         304 RNEELNQQFLAKAKEQ-GFVGLNGHRSV--GGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             SSHHHHHHHHHHHHHT-TEESCBCCTTT--CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHC-CCeeeeCCCcc--CcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence            8776777888888765 99998886653  24999999999999999999999988763

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=100.00  E-value=8.9e-32  Score=252.89  Aligned_cols=331  Identities=13%  Similarity=0.096  Sum_probs=234.7

Q ss_pred             cccccCC--CcCChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccC
Q 015729           10 NHLFVPG--PVHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTL   81 (401)
Q Consensus        10 ~~~~~~~--p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~   81 (401)
                      .+.|+.|  +.++|+.+++++.+.... ...|.......++|+.+++++    |.. .++++++|+|+++|+..++.+++
T Consensus        32 vi~l~~G~p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~  111 (388)
T d1j32a_          32 VCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI  111 (388)
T ss_dssp             CEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC
T ss_pred             eEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHh
Confidence            3455544  455678888887764322 112333334445666666554    543 44569999999999999999999


Q ss_pred             CCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---h
Q 015729           82 SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---L  156 (401)
Q Consensus        82 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l  156 (401)
                      +|||+|++++|+|+++.  ..++..|.+++.++...+  +.+|+++++++++    ++++++++++|+||||.+++   +
T Consensus       112 ~~gd~Vlv~~P~y~~~~--~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~----~~~~~~~~~~P~NPTG~~~~~~~~  185 (388)
T d1j32a_         112 EPGDEVIIPAPFWVSYP--EMVKLAEGTPVILPTTVETQFKVSPEQIRQAIT----PKTKLLVFNTPSNPTGMVYTPDEV  185 (388)
T ss_dssp             CTTCEEEEESSCCTHHH--HHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHH
T ss_pred             CCCCEEEEcCCCcHHHH--HHHHHhcCeEEEEecccccccCCCHHHHHHhCC----CCCeEEEECCCCCCCCcccchhhh
Confidence            99999999999877654  556778888888887653  4689999999887    46799999999999999997   5


Q ss_pred             HHHHHHhhhcCCCcEEEEecccccCccee----cc-----CcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCC
Q 015729          157 SKVRKLLDEYRHPALFLVDGVSSICAIDF----RM-----DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAK  226 (401)
Q Consensus       157 ~~i~~l~~~~~~~~~li~D~a~~~~~~~~----~~-----~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~  226 (401)
                      ++|.++|++  +|++||+|++|.......    ..     ......+++.|.+|.++ .+..+|+++.++++.+.+....
T Consensus       186 ~~l~~~~~~--~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~  263 (388)
T d1j32a_         186 RAIAQVAVE--AGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQ  263 (388)
T ss_dssp             HHHHHHHHH--HTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHH
T ss_pred             hhhhccccc--CCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEECHHHHHHHHHhh
Confidence            667888899  999999999986433210    11     11134688999999985 2344799999999877654210


Q ss_pred             CCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCC
Q 015729          227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFS  305 (401)
Q Consensus       227 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~  305 (401)
                                   ..     ....++.....++..++... ...+++.+++++++.+.+.+.|++. |+.+..++    .
T Consensus       264 -------------~~-----~~~~~~~~~q~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~----g  320 (388)
T d1j32a_         264 -------------GH-----STSNVCTFAQYGAIAAYENS-QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPD----G  320 (388)
T ss_dssp             -------------HT-----TTCSCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCC----B
T ss_pred             -------------hh-----ccccccHHHHHHHhhcccch-HHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCCC----c
Confidence                         00     01124443333333332211 1236778888899999999999887 77776543    4


Q ss_pred             ceeEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          306 DTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       306 ~~~~~~~~~~-~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +.++|+.++. +.+..++++.|.+++||.+.||......+++|+++.  .+++++++++++|+++++.+
T Consensus       321 g~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~--~~~e~l~~al~rl~~~l~~l  387 (388)
T d1j32a_         321 AFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             TTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEe--CCHHHHHHHHHHHHHHHHHh
Confidence            4577777764 457778988888777999999966556789999875  48899999999999999864

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=100.00  E-value=3.1e-32  Score=257.81  Aligned_cols=351  Identities=15%  Similarity=0.088  Sum_probs=258.9

Q ss_pred             CCCCCCCCcccccCCCcCChHHHHHHHccCcCCCCC---------ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHH
Q 015729            2 DYMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRS---------PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGA   72 (401)
Q Consensus         2 ~~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~---------~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a   72 (401)
                      +|+..++.+||++++-+++|+.|++++.++......         ..+.+..+++|+.+++++|.++++ +++++|+|++
T Consensus        21 ~F~~~~~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~e-i~~~~~~T~~   99 (404)
T d1qz9a_          21 QFALPEGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGE-VVVTDTTSIN   99 (404)
T ss_dssp             GBCCCTTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTS-EEECSCHHHH
T ss_pred             cCCCCCCCEEcCCcccccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCc-EEEecCchHH
Confidence            356667899999999999999999998775422111         112356789999999999998876 9999999999


Q ss_pred             HHHHHhc------cCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEec
Q 015729           73 WESALTN------TLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHN  146 (401)
Q Consensus        73 ~~~~~~~------~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~  146 (401)
                      ++.++..      ...+++.|++.+..+++......  ..+.++..+..+.++..+++.+++++++    ++++|++++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~T~lV~i~~v  173 (404)
T d1qz9a_         100 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIA--EGLADMLQQGYTLRLVDSPEELPQAIDQ----DTAVVMLTHV  173 (404)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHH--HHHHHHHCSSCEEEEESSGGGHHHHCST----TEEEEEEESB
T ss_pred             HHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHH--hhhheeeeeceeccccccchhHHHhcCC----CceEEEEecc
Confidence            9876543      24688999999888887652111  1112222223333344578899998874    6799999999


Q ss_pred             CCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCc-ceEEEecHHHHHHhccC
Q 015729          147 ETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTG-MGIVCASPKALEASKTA  225 (401)
Q Consensus       147 ~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g-~G~l~~~~~~~~~~~~~  225 (401)
                      +|.||.+.|+++|.++|++  +|+++++|++|+.|..+++.+.+++|++++|.|||+++++| +|+++.+++..+.+...
T Consensus       174 ~~~tG~~~pv~~i~~~~~~--~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~~  251 (404)
T d1qz9a_         174 NYKTGYMHDMQALTALSHE--CGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQP  251 (404)
T ss_dssp             CTTTCBBCCHHHHHHHHHH--HTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCS
T ss_pred             cccccceecHHHHhccccc--cccceeEEeeccccccccccccccceEEEEechhhcccCCceEEEEEechhhhhhCCcc
Confidence            9999999999999999999  99999999999999999999999999999999999977665 68999998876665533


Q ss_pred             CCCcccc----------chHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH----
Q 015729          226 KSVRVFF----------DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEA----  291 (401)
Q Consensus       226 ~~~~~~~----------~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~----  291 (401)
                      .......          ........     +..++++.........++..+...+.+.+.++...+.+.+...+..    
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~  326 (404)
T d1qz9a_         252 LSGWFGHSRQFAMEPRYEPSNGIAR-----YLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAA  326 (404)
T ss_dssp             CCCGGGBCTTSCCCSSCCBCSSGGG-----GCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccCCccccccccccccccccchh-----hhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhccC
Confidence            2211000          00001122     2344688888888888888888888777777777777666555443    


Q ss_pred             cCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeec-ccCCHHHHHHHHHHHHHHH
Q 015729          292 WGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHL-GHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       292 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~-~~~~~~di~~~~~~i~~~l  370 (401)
                      .|+++..+........++.|.++   +..++.+.|.++ ||.+..    ..++.+|||+. .++|++|||+++++|++++
T Consensus       327 ~~~~i~~p~~~~~r~~~vsf~~~---~~~~v~~~L~~~-gi~~~~----r~~~~lRiS~~h~ynt~~did~~~~~L~~vl  398 (404)
T d1qz9a_         327 HELTLVTPREHAKRGSHVSFEHP---EGYAVIQALIDR-GVIGDY----REPRIMRFGFTPLYTTFTEVWDAVQILGEIL  398 (404)
T ss_dssp             SCCEECSCSSGGGBCSEEEEECT---THHHHHHHHHTT-TEECEE----ETTTEEEEECCTTTCCHHHHHHHHHHHHHHH
T ss_pred             CCEEEECCCCccceeeEEEEecC---CHHHHHHHHHHC-CCEEee----cCCCeEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence            27888765443344457778875   478899999765 986531    13568999984 5799999999999999999


Q ss_pred             HhcC
Q 015729          371 KDVG  374 (401)
Q Consensus       371 ~~~~  374 (401)
                      ++-.
T Consensus       399 ~~~~  402 (404)
T d1qz9a_         399 DRKT  402 (404)
T ss_dssp             HHTT
T ss_pred             HhCC
Confidence            8744

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=4.6e-31  Score=246.09  Aligned_cols=329  Identities=12%  Similarity=0.117  Sum_probs=229.3

Q ss_pred             CChHHHHHHHccCcCCCC------CccH-----HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeE
Q 015729           19 HIPDQVIRAMNRNNEDYR------SPAV-----PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRI   87 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~~~------~~~~-----~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~v   87 (401)
                      .+++++++++.+++..+.      ....     ..+...+++.+++++|.+.   +++|+|+|+|+.+++.++++|||+|
T Consensus        13 ~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e~---~~~t~g~t~a~~~~~~al~~~gd~V   89 (364)
T d2e7ja1          13 KLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDV---ARVTNGAREAKFAVMHSLAKKDAWV   89 (364)
T ss_dssp             CCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSE---EEEESSHHHHHHHHHHHHCCTTCEE
T ss_pred             cCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhCcCE---EEEECcHHHHHHHHHHHHhCCCcEE
Confidence            467889999988654321      0111     1246679999999999864   8899999999999999999999999


Q ss_pred             EEEcCCcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCC-CCceEEEEEecCCCcccccchHHHHHHhh
Q 015729           88 ISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTA-HTIKAICIVHNETATGVTNNLSKVRKLLD  164 (401)
Q Consensus        88 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~-~~~~~i~~~~~~n~tG~~~~l~~i~~l~~  164 (401)
                      +++.++|++..  ..++..|++++.++.+.  ++.+|++++++++++.+. .+++++++++++|++|.+.|+++|.++|+
T Consensus        90 i~~~~~h~s~~--~~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~  167 (364)
T d2e7ja1          90 VMDENCHYSSY--VAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCS  167 (364)
T ss_dssp             EEETTCCHHHH--HHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             Eeecccccccc--hHHHhccceEEEeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccc
Confidence            99999998876  34677899999999864  457899999999986541 34678899999999999999999999999


Q ss_pred             hcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcC
Q 015729          165 EYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG  244 (401)
Q Consensus       165 ~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  244 (401)
                      +  +|+++|+|++|+.+..+.+....++|++++|+||+++++.|+|+++.+++..+.+...........     ..+   
T Consensus       168 ~--~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~~~~-----~~~---  237 (364)
T d2e7ja1         168 E--YDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKE-----VEL---  237 (364)
T ss_dssp             T--TTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSB-----GGG---
T ss_pred             c--ccchhhccccchhhhhhhcccccccceeeeccccccCCCCCEEEEEECHHHHHHHHhhccccCccc-----ccc---
Confidence            9  999999999999998888888889999999999999777778999999987665543221110000     001   


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCC--------
Q 015729          245 TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSH--------  316 (401)
Q Consensus       245 ~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~--------  316 (401)
                        ...+.......++.++++...+. ++. ..+..++.+++.+.|.++|+..+...+.. . ....+..+..        
T Consensus       238 --~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~  311 (364)
T d2e7ja1         238 --LGCTARGATIITLMASFPHVRER-IKR-WDEEVEKARRFAAEMEKLGIKQLGDNPHN-H-DLMFFHAEVLYEISKKAK  311 (364)
T ss_dssp             --TTCCCCSHHHHHHHHHHHHHHHH-GGG-HHHHHHHHHHHHHHHHHTTCEEESSSSCC-S-SEEEEECHHHHHHHHHSS
T ss_pred             --cccccchhHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHcCCeecCCCCCC-c-ceEEEeccchHHHHHHhh
Confidence              11123333445556666655432 222 23334667788888988888776544322 2 2333443210        


Q ss_pred             CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          317 INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       317 ~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .....+...|..+ ++...   .+.....+|++.++ +|++|+|+++++|++++++.
T Consensus       312 ~~~~~~~~~l~~~-~~~~~---~~g~~~~~~~~~~~-~t~edid~~~~~l~ei~~~y  363 (364)
T d2e7ja1         312 GGRFFLYRELKSR-KIHGI---KPGLTRYFKLSTYG-LSDEEVDYVLNAFKEIIEKY  363 (364)
T ss_dssp             SGGGHHHHHHHHT-TEECS---CTTCCSEEEEECTT-CCHHHHHHHHHHHHHHHHHC
T ss_pred             ccchHHHHHHHhc-CCcee---cCCCcceEEEeccC-CCHHHHHHHHHHHHHHHHHh
Confidence            0111233334433 55422   12234568887554 68999999999999999863

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.98  E-value=9.8e-31  Score=245.41  Aligned_cols=319  Identities=17%  Similarity=0.121  Sum_probs=226.3

Q ss_pred             cCChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           18 VHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      .++|+.+++++.+.... ..+|.......++|+.+++++    |.+ .++++++|+|+++|+..++.+++++||+|++++
T Consensus        43 ~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~  122 (382)
T d1b5pa_          43 FDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLS  122 (382)
T ss_dssp             SCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCCCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhCCCCCEEEECC
Confidence            35677788877764322 223333344557777777766    433 345699999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhc
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY  166 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~  166 (401)
                      |+|+++.  ..++..|++++.++..++  ..+|++++++.++    ++++++++++|+||||.+++   +++|.++|++ 
T Consensus       123 P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~----~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~-  195 (382)
T d1b5pa_         123 PYWVSYP--EMVRFAGGVVVEVETLPEEGFVPDPERVRRAIT----PRTKALVVNSPNNPTGAVYPKEVLEALARLAVE-  195 (382)
T ss_dssp             SCCTHHH--HHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH-
T ss_pred             CCcHHHH--HHHHHhcCeEEEEecccccccCCCHHHHHHhCC----CCCeEEEECCCCCCcchhCCHHHHHHHHHHHHH-
Confidence            9877654  567889999999987653  4679999998876    46799999999999999997   5678888999 


Q ss_pred             CCCcEEEEecccccCccee-----ccCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHH
Q 015729          167 RHPALFLVDGVSSICAIDF-----RMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF  240 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~~~-----~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
                       +|++||+|++|+.....-     ........+++.|.+|.++ .+.++|+++.+++.++.+....             .
T Consensus       196 -~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~G~~~~~~~~i~~~~~~~-------------~  261 (382)
T d1b5pa_         196 -HDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVS-------------R  261 (382)
T ss_dssp             -TTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHH-------------H
T ss_pred             -cCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcHhheEEEEECHHHHHHHHHHH-------------H
Confidence             999999999987433211     0111234688899999985 2344799999998877654210             0


Q ss_pred             hhcCCCCCCCCcHHHHHHHHHHHHH--HHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcC-CCC
Q 015729          241 YNLGTFWPYTPSIQLLYGLRAALDL--IFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVP-SHI  317 (401)
Q Consensus       241 ~~~g~~~~~~~~~~~~~a~~~al~~--~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~~~  317 (401)
                      .  .   ..+++.....++.+++..  .....++..++.++++.+.+.+.+.+.|+++..++    .+.++|++++ ...
T Consensus       262 ~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~----gg~~~~~~~~~~~~  332 (382)
T d1b5pa_         262 Q--S---TTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPS----GAFYVLMDTSPIAP  332 (382)
T ss_dssp             T--T---TCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCS----BTTEEEEECTTTCS
T ss_pred             h--c---ccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcCCeEecCC----ceEEEeEeCCCCCC
Confidence            0  0   112333322222223221  11222456677778888888888888888876543    4567888884 345


Q ss_pred             CHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          318 NSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       318 ~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      +...+.+.|.++ ||.+.||......+++|+++.  .+++++++++++|+++
T Consensus       333 ~~~~~~~~l~e~-gV~v~PG~~F~~~~~iRis~~--~~~e~l~~al~rl~~~  381 (382)
T d1b5pa_         333 DEVRAAERLLEA-GVAVVPGTDFAAFGHVRLSYA--TSEENLRKALERFARV  381 (382)
T ss_dssp             SHHHHHHHHHHT-TEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHGGGG
T ss_pred             CHHHHHHHHHHC-CEEEEeCcccCCCCeEEEEEc--CCHHHHHHHHHHHHHh
Confidence            677888888766 999999966556789999875  3889999999998765

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=7.2e-29  Score=230.90  Aligned_cols=325  Identities=12%  Similarity=0.026  Sum_probs=218.6

Q ss_pred             CChHHHHHHHccCcCC-CCCc---cHHHHHHHHHHHHHHHhcCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcCC
Q 015729           19 HIPDQVIRAMNRNNED-YRSP---AVPALTKTLLEDIKKIFKTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIG   93 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~-~~~~---~~~~~~~~l~~~la~~~g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~   93 (401)
                      ++|+.+.+++.+.... ..+|   ...+..+.+.+.+++.+|.+ +++++++|+|+++++..++.+++++||+|++++|.
T Consensus        12 ~~p~~i~eal~~~~~~~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~P~   91 (361)
T d1d2fa_          12 ATAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPA   91 (361)
T ss_dssp             CCCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESC
T ss_pred             CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhcccccccccccccc
Confidence            3445566665553221 1111   12233333444444444664 44569999999999999999999999999999998


Q ss_pred             cchHHHHHHHHHcCCcEEEEeCCC---CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcC
Q 015729           94 QFSLLWIDQQQRLNFNVDVVESDW---GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYR  167 (401)
Q Consensus        94 ~~~~~~~~~~~~~g~~~~~v~~~~---~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~  167 (401)
                      |+.+.  ...+..|.+++.++.+.   ++.+|++.+++.+.+   ++++++++++++||||.+++   +++|.++|++  
T Consensus        92 y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~---~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~--  164 (361)
T d1d2fa_          92 YDAFY--KAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK---PECKIMLLCSPQNPTGKVWTCDELEIMADLCER--  164 (361)
T ss_dssp             CHHHH--HHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS---TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHH--
T ss_pred             ccchh--HHHHhhcceEEeecccccccccccccccchhhccc---CCceeEEecccccccccccchhhhhhhhhhhhh--
Confidence            77654  56777899888887643   335799999998865   46899999999999999987   6678999999  


Q ss_pred             CCcEEEEecccccCcce------eccCcccceEEEecCCCcccC-CCcceEEEecHHHH-HHhccCCCCccccchHHHHH
Q 015729          168 HPALFLVDGVSSICAID------FRMDEWGIDVALTGSQKALSL-PTGMGIVCASPKAL-EASKTAKSVRVFFDWKDYIK  239 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~~------~~~~~~~~di~~~s~~K~l~g-~~g~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~  239 (401)
                      +|++||+|++|......      +.....+..+++.|.+|.++. +.++|++++..... .....               
T Consensus       165 ~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~---------------  229 (361)
T d1d2fa_         165 HGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLS---------------  229 (361)
T ss_dssp             TTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHH---------------
T ss_pred             hheeeeecccccccccccccccccccccccccccccccccccccccccceeeecchhHHHHHHhh---------------
Confidence            99999999998754211      111122346788888997742 33568887654332 21110               


Q ss_pred             HhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcC-CC
Q 015729          240 FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVP-SH  316 (401)
Q Consensus       240 ~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~-~~  316 (401)
                      .+. .....++++...+++...+++... ...++.+..+.++.+.+.+.+.+.  ++.+..++    ++.++|++++ .+
T Consensus       230 ~~~-~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~----gg~~~~~~l~~~~  303 (361)
T d1d2fa_         230 ALK-GRDGLSSPSVLALTAHIAAYQQGA-PWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQ----STYLAWLDLRPLN  303 (361)
T ss_dssp             HHH-TTSCCCSCCHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCS----BCSEEEEECGGGC
T ss_pred             hcc-cccccccchhhhHHHHHHHhhccc-hhhhcccccchhhHHHHHHHhhhhcccccccccC----ceeEEEEEccCCC
Confidence            000 111133455544444444443322 224566777777777777777664  55555442    3457778873 46


Q ss_pred             CCHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          317 INSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       317 ~~~~~l~~~L~~~~~i~v~~g~~--~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .+..+++++|++++||.+.||..  ....+++||++.  .+++++++++++|.++++++
T Consensus       304 ~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~--~~~e~l~~al~rl~~~l~~l  360 (361)
T d1d2fa_         304 IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG--CPRSKLEKGVAGLINAIRAV  360 (361)
T ss_dssp             CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEc--CCHHHHHHHHHHHHHHHHhc
Confidence            78999999998888999999844  333568999864  48899999999999999875

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=2.5e-29  Score=234.68  Aligned_cols=314  Identities=17%  Similarity=0.153  Sum_probs=227.3

Q ss_pred             CChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH
Q 015729           19 HIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL   98 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~   98 (401)
                      ++++.+++++.+......+|.......++|+.|+++++.++++ +++++|+++|+..++.+++.+||.|++++|+|..+.
T Consensus        38 ~~p~~i~~al~~~l~~~~~Y~~~~G~~elr~aiA~~~~~~~~~-Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~  116 (368)
T d1v2da_          38 PPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEEFAVEPES-VVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYL  116 (368)
T ss_dssp             CCCHHHHHHHHHHTTTSCSCCCTTCCHHHHHHHHHHHTSCGGG-EEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHH
T ss_pred             CCCHHHHHHHHHHhhcccCCCCCcCCHHHHHHHHhhcccCCcc-eeeccchHHHHHHHhhccccccccccccCCcchhhh
Confidence            5678888988886554444555556779999999999997654 999999999999999999999999999999877664


Q ss_pred             HHHHHHHcCCcEEEEeCCC---CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEE
Q 015729           99 WIDQQQRLNFNVDVVESDW---GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALF  172 (401)
Q Consensus        99 ~~~~~~~~g~~~~~v~~~~---~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~l  172 (401)
                        ...+..|.+++.++.+.   .+.+|++.+++.+.+    .++++++++|+||||.+++   +++|+++|++  +|+++
T Consensus       117 --~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~--~~i~i  188 (368)
T d1v2da_         117 --PDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTP----RTRALLLNTPMNPTGLVFGERELEAIARLARA--HDLFL  188 (368)
T ss_dssp             --HHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--TTCEE
T ss_pred             --hHHHhcCCccceeccccccccccCCHHHHHHhhcc----CceEEEEcCCCCcccccCCHHHHHHHHHHHHH--cCCee
Confidence              55677888888887642   356899999998874    5689999999999999997   6678888999  99999


Q ss_pred             EEecccccCcceecc-----CcccceEEEecCCCcccC-CCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCC
Q 015729          173 LVDGVSSICAIDFRM-----DEWGIDVALTGSQKALSL-PTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTF  246 (401)
Q Consensus       173 i~D~a~~~~~~~~~~-----~~~~~di~~~s~~K~l~g-~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  246 (401)
                      |+|+++.........     ......+++.|.+|.++. +..+|+++.++++.+.+....             ...    
T Consensus       189 i~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~~~~~-------------~~~----  251 (368)
T d1v2da_         189 ISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMR-------------QWT----  251 (368)
T ss_dssp             EEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHH-------------HHH----
T ss_pred             eechhhhhhcccccccccccccccccceeecccccccccccccccccccccccchhhhhh-------------hcc----
Confidence            999998754322111     112244555666665532 234699999988766554321             000    


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHH
Q 015729          247 WPYTPSIQLLYGLRAALDLIFEE-GLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRR  325 (401)
Q Consensus       247 ~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  325 (401)
                       ..+++.....+..+++...... .++..++.++++.+.+.+.|++.|+++..++    .+.++|+.+| +.+..+   .
T Consensus       252 -~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p~----g~~~~~~~l~-~~~~~~---l  322 (368)
T d1v2da_         252 -SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPE----GTYFLMAELP-GWDAFR---L  322 (368)
T ss_dssp             -TSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCS----BSSEEEEECT-TCCHHH---H
T ss_pred             -ccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcCcEEecCC----ceeEEEEeCC-ccHHHH---H
Confidence             1124443334444555543333 3677788889999999999999999887653    3457888885 445433   3


Q ss_pred             HHhhCCeEEccCCCC----CCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          326 AWQRYNLSLGLGLNK----VAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       326 L~~~~~i~v~~g~~~----~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      | ++.||.+.+|...    ...+++||++.  .+++++++++++|++++
T Consensus       323 l-~~~gI~v~pg~~F~~~~~~~~~iRis~~--~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         323 V-EEARVALIPASAFYLEDPPKDLFRFAFC--KTEEELHLALERLGRVV  368 (368)
T ss_dssp             H-HHTCEECEEGGGGCSSSCCTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred             H-HhCCEEEEechhhCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHhC
Confidence            4 4559999988432    23578999875  38999999999998763

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.7e-28  Score=230.18  Aligned_cols=336  Identities=15%  Similarity=0.117  Sum_probs=245.3

Q ss_pred             CCCCCCCcccccCCCcCChHHHHHHHccCcCCCCCcc----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            3 YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYRSPA----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         3 ~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~~----~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      |.+++++.||-.+.-+.+-+++.+++.++.....+..    ..+...++++.+++++|.+.   ++++++|+.|+..++.
T Consensus        47 ~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g~e~---al~~~SG~~An~~~i~  123 (401)
T d1fc4a_          47 VINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMED---AILYSSCFDANGGLFE  123 (401)
T ss_dssp             EEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSE---EEEESCHHHHHHTTHH
T ss_pred             EEEEEccccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhhcCCc---eEEecchhhhhHHHHH
Confidence            5566667776554333344444555555443332221    24667899999999999876   7899999999999999


Q ss_pred             ccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhcc--CCCCceEEEEEecCCCcccccch
Q 015729           79 NTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAAD--TAHTIKAICIVHNETATGVTNNL  156 (401)
Q Consensus        79 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~--~~~~~~~i~~~~~~n~tG~~~~l  156 (401)
                      ++.+++|.|++....|++..  ..+...++++..++..     |++++++++++.  ...+..++++....++.|.+.|+
T Consensus       124 ~l~~~~d~i~~d~~~h~s~~--~G~~~~~a~~~~~~~~-----d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L  196 (401)
T d1fc4a_         124 TLLGAEDAIISDALNHASII--DGVRLCKAKRYRYANN-----DMQELEARLKEAREAGARHVLIATDGVFSMDGVIANL  196 (401)
T ss_dssp             HHCCTTCEEEEETTCCHHHH--HHHHTSCSEEEEECTT-----CHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCH
T ss_pred             HhcCCCcEEEeCCcchHHHH--ccccccCceEEEEcCC-----ChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhh
Confidence            99999999999988888765  3456677787777644     677776665431  11345677888888999999999


Q ss_pred             HHHHHHhhhcCCCcEEEEecccccCcceec--------cCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCC
Q 015729          157 SKVRKLLDEYRHPALFLVDGVSSICAIDFR--------MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV  228 (401)
Q Consensus       157 ~~i~~l~~~~~~~~~li~D~a~~~~~~~~~--------~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~  228 (401)
                      +++.++|++  +|+++|+|++|++|.+...        .....+|+++.+.+|.++|+.| |+++++++..+.+....  
T Consensus       197 ~~l~~L~~~--~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~G-g~v~g~~~~~~~l~~~~--  271 (401)
T d1fc4a_         197 KGVCDLADK--YDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASG-GYTAARKEVVEWLRQRS--  271 (401)
T ss_dssp             HHHHHHHHH--TTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC-EEEEECHHHHHHHHHHC--
T ss_pred             hHHHHHHhh--cCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCCc-ccccCCHHHHHHHHcCC--
Confidence            999999999  9999999999998764321        0122589999999999965555 99999999887665321  


Q ss_pred             ccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCcee
Q 015729          229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV  308 (401)
Q Consensus       229 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~  308 (401)
                                ..+    .+....++..++++..+++.....  ++.+++.+++.+++++.+...|+.+...    .+ .+
T Consensus       272 ----------~~~----~~s~~l~p~~~~aa~~~l~~~~~~--~~~~~~l~~~~~~~~~~l~~~g~~~~~~----~~-pI  330 (401)
T d1fc4a_         272 ----------RPY----LFSNSLAPAIVAASIKVLEMVEAG--SELRDRLWANARQFREQMSAAGFTLAGA----DH-AI  330 (401)
T ss_dssp             ----------HHH----HHSCCCCHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHTTCCBCCS----SS-SE
T ss_pred             ----------hhh----hhcCCCCHHHHHHHHhhhcccccC--HHHHHHHHHHHHHHHhhhcccCCccCCC----CC-CE
Confidence                      111    112246666666677777765543  6789999999999999999998877553    23 35


Q ss_pred             EEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecccCCHHHHHHHHHHHHHHHHhcCC
Q 015729          309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGY  375 (401)
Q Consensus       309 ~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~---~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~~  375 (401)
                      +.+.+.+...+.++++.|.++ ||.+.+..+|.   ....+|+++...+|++|||+++++|+++.+++|+
T Consensus       331 v~v~~~~~~~a~~~~~~L~~~-Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~lg~  399 (401)
T d1fc4a_         331 IPVMLGDAVVAQKFARELQKE-GIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLGV  399 (401)
T ss_dssp             EEEEEECHHHHHHHHHHHHHT-TEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             EEEEECCHHHHHHHHHHHHHC-CceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            555664444456789999877 99987665432   2345999999999999999999999999999875

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.97  E-value=2.1e-28  Score=230.23  Aligned_cols=331  Identities=11%  Similarity=0.024  Sum_probs=219.6

Q ss_pred             cccccCC-C-cCChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccC
Q 015729           10 NHLFVPG-P-VHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTL   81 (401)
Q Consensus        10 ~~~~~~~-p-~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~   81 (401)
                      .+.++.| | .++|+.+++++.+.... ..+|.  +...+||+.+++++    |.+ .+++|++|+|+++|+..++.+++
T Consensus        33 vi~l~~g~pdf~~p~~v~~al~~~~~~~~~~Y~--~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~  110 (394)
T d1c7na_          33 VVPLSVADMEFKNPPELIEGLKKYLDETVLGYT--GPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT  110 (394)
T ss_dssp             CCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSB--CCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC
T ss_pred             eEEccCCCCCCCCCHHHHHHHHHHHhCCCcCCC--CCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhcccc
Confidence            3445443 2 35567777777663321 11221  11235666666655    554 44669999999999999999999


Q ss_pred             CCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCC---CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---
Q 015729           82 SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW---GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---  155 (401)
Q Consensus        82 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~---~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---  155 (401)
                      +|||+|+++++.++++.  ......|.+.+.++...   .+.+|.+.++..+..   ++++++++++|+||||.+++   
T Consensus       111 ~pgd~vi~~~p~~~~~~--~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~i~l~~P~NPTG~v~s~~~  185 (394)
T d1c7na_         111 KPGDGVIIITPVYYPFF--MAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD---KNNKALLFCSPHNPVGRVWKKDE  185 (394)
T ss_dssp             CTTCEEEECSSCCTHHH--HHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC---TTEEEEEEESSBTTTTBCCCHHH
T ss_pred             ccccccccccCcccchh--hHHhhhhhcccccccccccccccchhhhhhhhhcc---ccceEEEecccccccceeccHHH
Confidence            99999999999877664  45677788888776532   335788888887753   46799999999999999997   


Q ss_pred             hHHHHHHhhhcCCCcEEEEecccccCccee------c---cCcccceEEEecCCCccc-CCCcceEEEecHHHH-HHhcc
Q 015729          156 LSKVRKLLDEYRHPALFLVDGVSSICAIDF------R---MDEWGIDVALTGSQKALS-LPTGMGIVCASPKAL-EASKT  224 (401)
Q Consensus       156 l~~i~~l~~~~~~~~~li~D~a~~~~~~~~------~---~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~-~~~~~  224 (401)
                      +++|+++|++  ++++||+|++|......-      .   .......+++.|.+|.++ ++.++|++++.+..+ +.+..
T Consensus       186 l~~l~~~a~~--~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~  263 (394)
T d1c7na_         186 LQKIKDIVLK--SDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTK  263 (394)
T ss_dssp             HHHHHHHHHH--SSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHH
T ss_pred             hhhhhccccc--cceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccccccChhhhhhhhh
Confidence            4568888888  999999999987432110      0   011235688889999884 233457777765543 33321


Q ss_pred             CCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCc
Q 015729          225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEE  302 (401)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~  302 (401)
                      .             .....    ..+.+....+++....... ....++..+.+.++.+.+.+.++..  ++.+..+   
T Consensus       264 ~-------------~~~~~----~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p---  322 (394)
T d1c7na_         264 S-------------RDATS----GMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLI---  322 (394)
T ss_dssp             H-------------HHHTT----CCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCC---
T ss_pred             h-------------hhhcc----ccccccccchhhhhhhcch-hhhhcccccccchhhhhhhhhhhccccceeecCC---
Confidence            1             00000    1123332222222222211 1225566677777777778888764  5554443   


Q ss_pred             cCCceeEEEEcCC-CCCHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          303 WFSDTVTAVIVPS-HINSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       303 ~~~~~~~~~~~~~-~~~~~~l~~~L~~~~~i~v~~g~~--~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                       ..+.++|+++|. +.+..++++.|.+++||.+.||..  ....+++||++.  .+++++++++++|+++++++
T Consensus       323 -~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~--~~~e~i~eal~rl~~~l~~L  393 (394)
T d1c7na_         323 -EGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLA--APSSVIQESLERLNKALKDL  393 (394)
T ss_dssp             -SBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             -CceeEEEEECCCCCCCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHHhc
Confidence             234578888865 678899999998888999999844  233568999864  47899999999999999876

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.97  E-value=2.8e-29  Score=237.79  Aligned_cols=330  Identities=11%  Similarity=0.059  Sum_probs=221.4

Q ss_pred             CcCChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhc----------CC-CCceEEecCChhHHHHHHHhccCCC
Q 015729           17 PVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFK----------TT-SGTPFLIPTTGTGAWESALTNTLSP   83 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g----------~~-~~~~i~~~~g~t~a~~~~~~~~~~~   83 (401)
                      |.++++++++++.+....  ..+|.......+||+.+++++.          .. .++++++|+|+++|+..++.+++++
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~  124 (412)
T d1bw0a_          45 NLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDA  124 (412)
T ss_dssp             CSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCT
T ss_pred             CccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhcc
Confidence            455677788887763221  1234334445577777777652          11 3456999999999999999999999


Q ss_pred             CCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHH
Q 015729           84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSK  158 (401)
Q Consensus        84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~  158 (401)
                      ||+|++++|.|+.+.  ..++..|++++.++++++  +..+++++++...    .+++++++++|+||||.+++   +++
T Consensus       125 Gd~Vlv~~P~y~~~~--~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~----~~~~~~~l~np~NPtG~~~~~~~~~~  198 (412)
T d1bw0a_         125 GDYALVPQPGFPHYE--TVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD----DKTKLLIVTNPSNPCGSNFSRKHVED  198 (412)
T ss_dssp             TCEEEEEESCCTHHH--HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred             ccceeeeeccchhhh--hhhhccCccccccccccccccchhhHHHHhhhh----ccccccccccccccccccchhhhccc
Confidence            999999999877654  567889999999998653  4578888888776    36699999999999999986   566


Q ss_pred             HHHHhhhcCCCcEEEEecccccCcce-----------eccCcccceEEEecCCCcccC-CCcceEEEecHHHHHHhccCC
Q 015729          159 VRKLLDEYRHPALFLVDGVSSICAID-----------FRMDEWGIDVALTGSQKALSL-PTGMGIVCASPKALEASKTAK  226 (401)
Q Consensus       159 i~~l~~~~~~~~~li~D~a~~~~~~~-----------~~~~~~~~di~~~s~~K~l~g-~~g~G~l~~~~~~~~~~~~~~  226 (401)
                      |.++|++  ++++||+|++|......           .+.+.....+++.|.+|.++. +.++|++++.+........  
T Consensus       199 i~~~~~~--~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~--  274 (412)
T d1bw0a_         199 IVRLAEE--LRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSF--  274 (412)
T ss_dssp             HHHHHHH--HTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHH--
T ss_pred             ccccccc--CCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCCCCcccccccchhhcchhh--
Confidence            7778888  99999999998743211           011122235677788998842 3346999886543111000  


Q ss_pred             CCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCC
Q 015729          227 SVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFS  305 (401)
Q Consensus       227 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~  305 (401)
                           ............+      ++....+.+.+.+....+..+++.++++.++++.+.+.|.+. |+.+..++    .
T Consensus       275 -----~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p~----g  339 (412)
T d1bw0a_         275 -----LEGLKRVGMLVCG------PCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPR----G  339 (412)
T ss_dssp             -----HHHHHHHHHHHTC------SCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCC----B
T ss_pred             -----hhhhccccccccC------CchhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhcCceecCCC----C
Confidence                 0000000111111      222211111111111112235677888888999999999775 77766543    3


Q ss_pred             ceeEEEEcC-----CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          306 DTVTAVIVP-----SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       306 ~~~~~~~~~-----~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +.+++++++     +..+..+++++|++++||.+.||......+++||++..  +++++++++++|++.+++.
T Consensus       340 g~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~~--~~e~l~eal~Rl~~~l~~~  410 (412)
T d1bw0a_         340 AMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTR--PVEVYREAVERIKAFCQRH  410 (412)
T ss_dssp             TTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS--CHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHhc
Confidence            456666664     22367789999887779999999655557799998754  8899999999999998764

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.96  E-value=1e-28  Score=234.21  Aligned_cols=329  Identities=11%  Similarity=0.035  Sum_probs=225.3

Q ss_pred             ccccCC-Cc-CChHHHHHHHccCcCC----CCCccHHHHHHHHHHHHHHHh----cCC--CCceEEecCChhHHHHHHHh
Q 015729           11 HLFVPG-PV-HIPDQVIRAMNRNNED----YRSPAVPALTKTLLEDIKKIF----KTT--SGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus        11 ~~~~~~-p~-~~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~----g~~--~~~~i~~~~g~t~a~~~~~~   78 (401)
                      ..++.| |. ++|+.+++++.+....    ..+|.......++|+.|++++    |.+  +.++|++|+|+++|+..++.
T Consensus        29 I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~  108 (418)
T d2r5ea1          29 LNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQ  108 (418)
T ss_dssp             EECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHH
T ss_pred             EEccCCCCCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhh
Confidence            445554 32 3456677776653321    122333334446666665554    554  33569999999999999999


Q ss_pred             ccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCC----------CCChHHHHHHHhccCCCCceEEEEEecCC
Q 015729           79 NTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE----------GAKLDVLASKLAADTAHTIKAICIVHNET  148 (401)
Q Consensus        79 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~----------~~d~~~le~~~~~~~~~~~~~i~~~~~~n  148 (401)
                      +++++||.|++++|+|+++.  ..+...|.+++.++++.++          ..+++++++...    .+++++++++++|
T Consensus       109 ~l~~~gd~vlv~~P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~p~N  182 (418)
T d2r5ea1         109 GHVDEGDEVIIIEPFFDCYE--PMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN----EKTKMIIINTPHN  182 (418)
T ss_dssp             HHCCTTCEEEEEESCCTTHH--HHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCC----TTEEEEEEESSCT
T ss_pred             hccccccceeccccccchhh--HHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhh----ccccceecCCcCc
Confidence            99999999999999887764  5677789999999875532          346677776654    4679999999999


Q ss_pred             Ccccccc---hHHHHHHhhhcCCCcEEEEecccccCcce-------ecc-CcccceEEEecCCCccc-CCCcceEEEecH
Q 015729          149 ATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID-------FRM-DEWGIDVALTGSQKALS-LPTGMGIVCASP  216 (401)
Q Consensus       149 ~tG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~~~~~-------~~~-~~~~~di~~~s~~K~l~-g~~g~G~l~~~~  216 (401)
                      |||.+++   +++|+++|++  +|++||+|++|......       ... +.....+++.|.+|.++ .+.++|++++++
T Consensus       183 PtG~~~s~e~~~~l~~~a~~--~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~  260 (418)
T d2r5ea1         183 PLGKVMDRAELEVVANLCKK--WNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPE  260 (418)
T ss_dssp             TTCCCCCHHHHHHHHHHHHH--HTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEESCH
T ss_pred             cccccccHHHHHHHhhhhhc--CCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCcccccccccc
Confidence            9999997   4568888889  99999999998754321       011 22345688889999985 334579999999


Q ss_pred             HHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHH------HhcHHHHHHHHHHHHHHHHHHHH
Q 015729          217 KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF------EEGLENVIERHRRLGKATRLAVE  290 (401)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~------~~g~~~~~~~~~~~~~~l~~~L~  290 (401)
                      +.++.+.....                . ...+.+++.+ .++...+....      +..+++.+++++.+++.+.+.|+
T Consensus       261 ~~i~~~~~~~~----------------~-~~~~~~~~~q-~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~  322 (418)
T d2r5ea1         261 ALLKNLQMVHQ----------------N-CVYTCATPIQ-EAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLA  322 (418)
T ss_dssp             HHHHHHHHHHT----------------T-TTCSCCHHHH-HHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhccc----------------c-cccccccchh-hhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHh
Confidence            98776643211                0 0011233322 22222221111      11256778888999999999999


Q ss_pred             HcCCccccCCCccCCceeEEEEcCC------------CCCHHHHHHHHHhhCCeEEccCCCCCC-------CcEEEEeec
Q 015729          291 AWGLKNCTQKEEWFSDTVTAVIVPS------------HINSSEIVRRAWQRYNLSLGLGLNKVA-------GKVFRIGHL  351 (401)
Q Consensus       291 ~~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~l~~~L~~~~~i~v~~g~~~~~-------~~~~Ri~~~  351 (401)
                      +.|+.+..+    ..+.++|+.++.            ..+..++++.|.+++||.+.||.....       .+++||++.
T Consensus       323 ~~g~~~~~P----~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~  398 (418)
T d2r5ea1         323 EVGMNPTVP----QGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF  398 (418)
T ss_dssp             HTTCEEEEC----SBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECC
T ss_pred             hcCCcccCC----CceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEec
Confidence            999887665    345677777641            235568899988777999999944321       368999874


Q ss_pred             ccCCHHHHHHHHHHHHHHHH
Q 015729          352 GHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       352 ~~~~~~di~~~~~~i~~~l~  371 (401)
                      .  +++++++++++|++++.
T Consensus       399 ~--~~e~l~~a~~rl~~~lg  416 (418)
T d2r5ea1         399 K--KDENLQKAAEILRKWKG  416 (418)
T ss_dssp             S--CHHHHHHHHHHHHHHHT
T ss_pred             C--CHHHHHHHHHHHHHHHc
Confidence            4  88999999999999873

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=4.7e-28  Score=226.53  Aligned_cols=324  Identities=19%  Similarity=0.145  Sum_probs=229.1

Q ss_pred             cccccCC-C-cCChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccC
Q 015729           10 NHLFVPG-P-VHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTL   81 (401)
Q Consensus        10 ~~~~~~~-p-~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~   81 (401)
                      .+.++.| | .++|+.+++++.+.... ..+|.......++|+.+++++    +.+ .++++++++|+++|+..++.+++
T Consensus        30 vI~l~~G~p~~~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~  109 (375)
T d1o4sa_          30 VINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL  109 (375)
T ss_dssp             CEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC
T ss_pred             eEECCCcCCCCCCCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHHh
Confidence            3445544 3 34567788888764322 122333344456666666655    443 34669999999999999999999


Q ss_pred             CCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---h
Q 015729           82 SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---L  156 (401)
Q Consensus        82 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l  156 (401)
                      ++||+|++++|+|+.+.  ......+.....++.+.+  +.+|.+.++....    .+++++++++|+||||.+++   +
T Consensus       110 ~~gd~vlv~~P~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~nP~NPTG~~~s~~~~  183 (375)
T d1o4sa_         110 DPGDEVIVFSPVWVSYI--PQIILAGGTVNVVETFMSKNFQPSLEEVEGLLV----GKTKAVLINSPNNPTGVVYRREFL  183 (375)
T ss_dssp             CTTCEEEEEESCCTTHH--HHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCC----TTEEEEEEESSCTTTCCCCCHHHH
T ss_pred             CCCCEEEEccCccccch--hhhhccccccccccccccccccchhHHHHHhhc----cCccEEEEeCCCCCccCCCCHHHH
Confidence            99999999999877664  446667888888877654  4567777776555    46799999999999999996   5


Q ss_pred             HHHHHHhhhcCCCcEEEEecccccCccee-------ccCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCC
Q 015729          157 SKVRKLLDEYRHPALFLVDGVSSICAIDF-------RMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSV  228 (401)
Q Consensus       157 ~~i~~l~~~~~~~~~li~D~a~~~~~~~~-------~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~  228 (401)
                      ++|.++|++  ++++||+|++|.......       ..+..+..+++.|.+|.++ .+..+|+++.+++..+.+....  
T Consensus       184 ~~i~~~a~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~~~~~~~~~~--  259 (375)
T d1o4sa_         184 EGLVRLAKK--RNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQ--  259 (375)
T ss_dssp             HHHHHHHHH--HTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHH--
T ss_pred             HHHHHhHHH--cCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccccccccccccchhhhhhhh--
Confidence            668888889  999999999887543211       1233457799999999985 3445799999998876554321  


Q ss_pred             ccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCcee
Q 015729          229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV  308 (401)
Q Consensus       229 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~  308 (401)
                                 .....     ..+..   ....+... .+.......+.+.++.+.+.+.|++.|+++..++    .+.+
T Consensus       260 -----------~~~~~-----~~~~~---~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~l~~~g~~~~~p~----gg~f  315 (375)
T d1o4sa_         260 -----------SHTTS-----CINTV---AQYAALKA-LEVDNSYMVQTFKERKNFVVERLKKMGVKFVEPE----GAFY  315 (375)
T ss_dssp             -----------HHHTC-----SCCHH---HHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCS----BSSE
T ss_pred             -----------ccccc-----ccccc---chhhhhhh-cccchhhhHHHHHHHHHHHHHHHHhcCceEecCC----ccEE
Confidence                       01111     12221   22222222 2233566777888889999999999998876653    4567


Q ss_pred             EEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       309 ~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      +|+.+|.  +..+++..|++++||.+.+|.....++++||++.  .+++++++++++|+++++
T Consensus       316 ~~~~~~~--~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~--~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         316 LFFKVRG--DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             EEEECSS--CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred             EEEECCC--CHHHHHHHHHHhCCEEEEEccccCCCCeEEEEEc--CCHHHHHHHHHHHHHHhc
Confidence            8888864  5667777877666999999966556789999875  389999999999999885

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.96  E-value=5.3e-28  Score=224.45  Aligned_cols=332  Identities=15%  Similarity=0.157  Sum_probs=251.4

Q ss_pred             CCCCCCCcccccCCCcCChHHHHHHHccCcCCCC----CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            3 YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         3 ~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~----~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      +..++++.||--..-..+-+++.+++.+++....    -....+...++++++++++|.+.   .++.++|..|+..++.
T Consensus        47 ~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e~---all~~sG~~An~~~i~  123 (396)
T d2bwna1          47 ITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEA---ALVFSSAYNANDATLS  123 (396)
T ss_dssp             EEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSE---EEEESCHHHHHHHHHH
T ss_pred             EEEEEcccccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhCCCc---eeeeecchHHHHHHHH
Confidence            3457788888887777777777888887654432    23345778899999999999976   7888889999998887


Q ss_pred             cc--CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccch
Q 015729           79 NT--LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNL  156 (401)
Q Consensus        79 ~~--~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l  156 (401)
                      ++  .+++|-|+.....|.+..  ..++..+++++.++.+     |.+++++.++.....+.++|++....++.|.+.|+
T Consensus       124 ~l~~~~~~d~i~~D~~~Hasi~--~g~~ls~a~~~~f~Hn-----d~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl  196 (396)
T d2bwna1         124 TLRVLFPGLIIYSDSLNHASMI--EGIKRNAGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPI  196 (396)
T ss_dssp             HHHHHSTTCEEEEETTCCHHHH--HHHHHSCCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCH
T ss_pred             HHhcccCCCceeehhhhhhccc--hhhhccccCceEeecc-----hHHHhhhHHhhhcccCceeEEEEeeccCccccccc
Confidence            76  467887777766666543  5577788988888755     78888888776443566788899999999999999


Q ss_pred             HHHHHHhhhcCCCcEEEEecccccCcceecc--------CcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCC
Q 015729          157 SKVRKLLDEYRHPALFLVDGVSSICAIDFRM--------DEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSV  228 (401)
Q Consensus       157 ~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~--------~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~  228 (401)
                      ++|.++|++  ||.++++|+||++|.+-...        ....+|++++|.+|.++ ..| |+++++++..+.+..... 
T Consensus       197 ~~l~~L~~~--y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g-~~G-g~v~~~~~~i~~l~~~~~-  271 (396)
T d2bwna1         197 KEICDIAEE--FGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYG-VFG-GYIAASARMVDAVRSYAP-  271 (396)
T ss_dssp             HHHHHHHHH--HTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTC-SCC-EEEEECHHHHHHHHHHCH-
T ss_pred             HhHHHHhhh--hcceeeeccceeeeeeccccccchhhcCCceeeeeeeeccccccc-ccc-cccchhHHHHHHHHhhcc-
Confidence            999999999  99999999999988753211        12357999999999994 555 899999998877653211 


Q ss_pred             ccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCcee
Q 015729          229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV  308 (401)
Q Consensus       229 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~  308 (401)
                                     +.-|...+++..++++.++++.+.....++.+++...+.+++++.|.++|+.+...    .+ ++
T Consensus       272 ---------------~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~----~s-pI  331 (396)
T d2bwna1         272 ---------------GFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDH----GS-HI  331 (396)
T ss_dssp             ---------------HHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC----SS-SC
T ss_pred             ---------------hhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCC----CC-CE
Confidence                           11123346777778888888887655456678888899999999999999887643    23 36


Q ss_pred             EEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          309 TAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       309 ~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~---~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      +.+.+.+...+.++++.|++++||.+.+..+|.   ....+||++.+.+|++|||+++++|+++
T Consensus       332 vpv~ig~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         332 VPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             EEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEeCCHHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence            667775433456788887654599988775542   2345999999999999999999999875

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.7e-28  Score=227.57  Aligned_cols=330  Identities=13%  Similarity=0.102  Sum_probs=249.0

Q ss_pred             CCCCCCCcccccCCCcCChHHHHHHHccCcCCCC----CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHh
Q 015729            3 YMYAPGKNHLFVPGPVHIPDQVIRAMNRNNEDYR----SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALT   78 (401)
Q Consensus         3 ~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~~----~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   78 (401)
                      |.++.++.||-...-..+-+++.+++.++.....    -....+...+++++|++++|.+.   .+++++|+.|+..++.
T Consensus        40 ~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g~e~---al~~~SG~~an~~~i~  116 (383)
T d1bs0a_          40 YLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSR---ALLFISGFAANQAVIA  116 (383)
T ss_dssp             EEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSE---EEEESCHHHHHHHHHH
T ss_pred             EEEEEcccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcCCCc---eEEecccchhhHHHHH
Confidence            5567777777766544566666677766543321    22345788899999999999875   7888999999999999


Q ss_pred             ccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHH
Q 015729           79 NTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSK  158 (401)
Q Consensus        79 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~  158 (401)
                      ++.+++|.|+.....|.+..  ..++..+.+++.++.+     |++++++.+.+.+ ++.++|+++.+.+++|.+.|+++
T Consensus       117 al~~~~d~v~~d~~~h~si~--~g~~~~~~~~~~~~hn-----d~~~le~~l~~~~-~~~~~vv~e~v~s~~G~i~pl~~  188 (383)
T d1bs0a_         117 AMMAKEDRIAADRLSHASLL--EAASLSPSQLRRFAHN-----DVTHLARLLASPC-PGQQMVVTEGVFSMDGDSAPLAE  188 (383)
T ss_dssp             HHCCTTCEEEEETTCCHHHH--HHHHTSSSEEEEECTT-----CHHHHHHHHHSCC-SSCEEEEEESBCTTTCCBCCHHH
T ss_pred             hhcCCCceEEeeccccHHHh--hccccCCCcceEecch-----HHHHHHHHhcccC-CCceEEEecCCCCCCCcccchhH
Confidence            99999999999888776654  4456778888877755     8999999998765 45678899999999999999999


Q ss_pred             HHHHhhhcCCCcEEEEecccccCcceec------cCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCcccc
Q 015729          159 VRKLLDEYRHPALFLVDGVSSICAIDFR------MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFF  232 (401)
Q Consensus       159 i~~l~~~~~~~~~li~D~a~~~~~~~~~------~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~  232 (401)
                      |.++|++  ||+++++|++|++|.+...      ......++++.+..|.++ ..| |++.++.+..+.+.....     
T Consensus       189 l~~l~~~--~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g-~~G-g~v~~~~~~~~~l~~~~~-----  259 (383)
T d1bs0a_         189 IQQVTQQ--HNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFG-VSG-AAVLCSSTVADYLLQFAR-----  259 (383)
T ss_dssp             HHHHHHH--TTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTS-SCC-EEEEECHHHHHHHHHHCH-----
T ss_pred             HHHHHHh--cCcEEEeecceeeeecCCcccchHHHcCCcccccccccccccc-ccc-cccccchhHHHHHHhhch-----
Confidence            9999999  9999999999998865432      122346788888999884 554 889999988776653211     


Q ss_pred             chHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEE
Q 015729          233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVI  312 (401)
Q Consensus       233 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~  312 (401)
                                 ...+....++..++++.++++.+.....+...++..++..++++.|.++|+.+...    .++ ++.+.
T Consensus       260 -----------~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~----~s~-Ii~v~  323 (383)
T d1bs0a_         260 -----------HLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADS----CSA-IQPLI  323 (383)
T ss_dssp             -----------HHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECSC----CSS-BCCEE
T ss_pred             -----------hhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCccCCC----CCC-EEEEE
Confidence                       11122346666677788888887766667788889999999999999988876543    232 33344


Q ss_pred             cCCCCCHHHHHHHHHhhCCeEEccCCCCC---CCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          313 VPSHINSSEIVRRAWQRYNLSLGLGLNKV---AGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       313 ~~~~~~~~~l~~~L~~~~~i~v~~g~~~~---~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      +++...+.++++.|+++ ||.+.+..+|.   ....+|+++...+|++|||+++++|+.+
T Consensus       324 ~g~~~~a~~~~~~L~~~-Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         324 VGDNSRALQLAEKLRQQ-GCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             EESHHHHHHHHHHHHHT-TEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             ECCHHHHHHHHHHHHHC-CceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            54433456889999877 99988765542   2235999999999999999999988753

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.96  E-value=7.7e-29  Score=233.26  Aligned_cols=325  Identities=12%  Similarity=0.059  Sum_probs=219.4

Q ss_pred             cCChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHH----hcCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEc
Q 015729           18 VHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKI----FKTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFL   91 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~----~g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~   91 (401)
                      .++|+.+++++.+.... ..+|.......++|+.++++    +|.+ .++++++++|+++++..++.+++.+||+|++++
T Consensus        45 f~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~  124 (395)
T d1xi9a_          45 FQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPG  124 (395)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhcCCCCEEEEcC
Confidence            46777788877764422 22233333344555555554    4554 345699999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhc
Q 015729           92 IGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEY  166 (401)
Q Consensus        92 ~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~  166 (401)
                      |+|+.+.  ..++..|++++.++...  ++.+|++++++.+.    ++++++++++|+||||.+++   +++|.++|++ 
T Consensus       125 P~y~~~~--~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~----~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~-  197 (395)
T d1xi9a_         125 PSYPPYT--GLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKIT----DRTKAIAVINPNNPTGALYDKKTLEEILNIAGE-  197 (395)
T ss_dssp             SCCHHHH--HHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH-
T ss_pred             Cccccch--hhhhhcCCEEEEEeccccccccchHHHHHHhhc----ccccEEEecCCCCCccchhhHHHHHHHHhhhhh-
Confidence            9876543  56888999999888643  45679999998886    46799999999999999997   5678888888 


Q ss_pred             CCCcEEEEecccccCcce------eccCcccceEEEecCCCcccC-CCcceEEEecH-H-HHHHhccCCCCccccchHHH
Q 015729          167 RHPALFLVDGVSSICAID------FRMDEWGIDVALTGSQKALSL-PTGMGIVCASP-K-ALEASKTAKSVRVFFDWKDY  237 (401)
Q Consensus       167 ~~~~~li~D~a~~~~~~~------~~~~~~~~di~~~s~~K~l~g-~~g~G~l~~~~-~-~~~~~~~~~~~~~~~~~~~~  237 (401)
                       ++++|+.|+++......      .........+++.|.+|.++. +..+|++++.. . ....+.            ..
T Consensus       198 -~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~------------~~  264 (395)
T d1xi9a_         198 -YEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVR------------EA  264 (395)
T ss_dssp             -HTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHH------------HH
T ss_pred             -cCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchhhcEeeEecCHHHHHHHHH------------HH
Confidence             99999999998743221      112222346888999998852 23468876532 1 111111            00


Q ss_pred             HHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcC-CccccCCCccCCceeEEEEcCCC
Q 015729          238 IKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG-LKNCTQKEEWFSDTVTAVIVPSH  316 (401)
Q Consensus       238 ~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~  316 (401)
                      .......   ...++.....++..++... ...+++.+++++++++.+.+.|++++ +.+..+    ..+.++|++++.+
T Consensus       265 ~~~~~~~---~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p----~gg~~~~~~l~~~  336 (395)
T d1xi9a_         265 IDRLARI---RLCPNTPAQFAAIAGLTGP-MDYLKEYMKKLKERRDYIYKRLNEIPGISTTKP----QGAFYIFPKIEVG  336 (395)
T ss_dssp             HHHHHHH---TCCSCSHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCC----CBSSEECCEECSC
T ss_pred             HHHhhcC---CCCcCHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHhCCCceecCC----CeeEEEeEECCCC
Confidence            0111111   1113332223333333211 12367778889999999999999874 444433    2345777777543


Q ss_pred             --CCHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          317 --INSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       317 --~~~~~l~~~L~~~~~i~v~~g~~--~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                        .+..+++..|.+++||.+.||..  ....+++||++.  .+++++++++++|++++++
T Consensus       337 ~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~--~~~e~l~eal~rl~~~l~e  394 (395)
T d1xi9a_         337 PWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMDRFEKFMKE  394 (395)
T ss_dssp             SCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHhc
Confidence              46678888877777999999854  233678999874  4889999999999999875

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.96  E-value=9.6e-28  Score=228.08  Aligned_cols=339  Identities=14%  Similarity=0.090  Sum_probs=225.6

Q ss_pred             CCCCcccccCC-CcCChHHHHHHHccCcCCCC------------CccHHHHHHHHHHHHHHHhc----C--C-CCceEEe
Q 015729            6 APGKNHLFVPG-PVHIPDQVIRAMNRNNEDYR------------SPAVPALTKTLLEDIKKIFK----T--T-SGTPFLI   65 (401)
Q Consensus         6 ~~~~~~~~~~~-p~~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~l~~~la~~~g----~--~-~~~~i~~   65 (401)
                      -|++...++-+ +....+.+.+.+.+....+.            .|.......+||+.|+++++    .  + .++++++
T Consensus        34 np~G~i~l~~aen~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivi  113 (428)
T d1iaya_          34 NPNGVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVM  113 (428)
T ss_dssp             STTSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEE
T ss_pred             CCCceEEeecccCccchHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEE
Confidence            45666666554 45556666666665332211            01111234578888887764    1  1 3456999


Q ss_pred             cCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhc--cCCCCceEE
Q 015729           66 PTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAA--DTAHTIKAI  141 (401)
Q Consensus        66 ~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~--~~~~~~~~i  141 (401)
                      |+|+++|+..++.+++++||+|+++.|.|+++. ..+....|++++.++.+..  ..+|+++++..++.  ....+++++
T Consensus       114 t~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~-~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  192 (428)
T d1iaya_         114 AGGATGANETIIFCLADPGDAFLVPSPYYPAFN-RDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGL  192 (428)
T ss_dssp             EEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHH-HHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCHHHHHHHHHHHhCCCCCEEEEccCCchHHH-HHHHHhcCCeEEEeecccccccccccccccchhhhhhccCCCceEE
Confidence            999999999999999999999999999876654 2233346899999988754  46788888765532  122578899


Q ss_pred             EEEecCCCcccccc---hHHHHHHhhhcCCCcEEEEecccccCcce----e---c--------cCcccceEEEecCCCcc
Q 015729          142 CIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID----F---R--------MDEWGIDVALTGSQKAL  203 (401)
Q Consensus       142 ~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~~~~~----~---~--------~~~~~~di~~~s~~K~l  203 (401)
                      ++++|+||||.+++   +++|.++|++  +|++||+|++|+.....    .   .        .......+++.|.+|.+
T Consensus       193 ~l~nP~NPtG~~~s~~~~~~i~~~a~~--~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~  270 (428)
T d1iaya_         193 ILTNPSNPLGTTLDKDTLKSVLSFTNQ--HNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM  270 (428)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHT--TTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS
T ss_pred             EEccCCCcccccccccccchhheeecc--CcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCcc
Confidence            99999999999997   5678889999  99999999998743211    0   0        11123458889999988


Q ss_pred             cC-CCcceEEEecHH-HHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHH--HHHHHhcHHHHHHHHH
Q 015729          204 SL-PTGMGIVCASPK-ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAAL--DLIFEEGLENVIERHR  279 (401)
Q Consensus       204 ~g-~~g~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al--~~~~~~g~~~~~~~~~  279 (401)
                      +. +..+|+++..++ +.+.+...                . .   ....+.....++.+.+  ....+..+++.++++.
T Consensus       271 ~~~GlRiG~~~~~~~~l~~~~~~~----------------~-~---~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~  330 (428)
T d1iaya_         271 GLPGFRVGIIYSFNDDVVNCARKM----------------S-S---FGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLG  330 (428)
T ss_dssp             SCGGGCEEEEEESCHHHHHHHHHH----------------H-T---TSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCCcccccccccccchhhhhhhh----------------h-c---ccccccccccchhhhhhhhccccccccccccccc
Confidence            42 234699988554 43333211                0 0   0112222222222222  1111223566777788


Q ss_pred             HHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCC------CHHHHHHHHHhhCCeEEccCCC--CCCCcEEEEeec
Q 015729          280 RLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI------NSSEIVRRAWQRYNLSLGLGLN--KVAGKVFRIGHL  351 (401)
Q Consensus       280 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~~~~i~v~~g~~--~~~~~~~Ri~~~  351 (401)
                      ++++.+.+.|+..|+++..+    ..+.++|++++...      +..++++.|.+++||.+.||..  ...++++||++ 
T Consensus       331 ~r~~~~~~~L~~~gi~~~~p----~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~-  405 (428)
T d1iaya_         331 KRHKHFTNGLEVVGIKCLKN----NAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCF-  405 (428)
T ss_dssp             HHHHHHHHHHHHTTCCBCCC----SSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEEC-
T ss_pred             hhHHHHHHHHHhCCCEEecC----CcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEe-
Confidence            88889999998889887654    34568888885322      2346788888878999999843  34568899976 


Q ss_pred             ccCCHHHHHHHHHHHHHHHHh
Q 015729          352 GHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       352 ~~~~~~di~~~~~~i~~~l~~  372 (401)
                      ++.+++++++++++|++++.+
T Consensus       406 a~~~~~~l~~al~Rl~~~l~~  426 (428)
T d1iaya_         406 ANMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHhh
Confidence            446788999999999999864

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=3.7e-28  Score=230.66  Aligned_cols=304  Identities=15%  Similarity=0.101  Sum_probs=212.3

Q ss_pred             HHHHHHHHHHHHH----hcCC--CCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC
Q 015729           42 ALTKTLLEDIKKI----FKTT--SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES  115 (401)
Q Consensus        42 ~~~~~l~~~la~~----~g~~--~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~  115 (401)
                      ....+||+.|+++    +|.+  ++++|++|+|+++|+..++.+++.+||.|++++|.|+.+.  ..++..|++++.++.
T Consensus        80 ~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~--~~~~~~g~~~~~~~~  157 (420)
T d1vp4a_          80 EGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAI--NAFRQYLANFVVVPL  157 (420)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH--HHHHTTTCEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhhccccccccccccccchh--HHHHHHhhhcccccc
Confidence            3344555655554    4543  4566999999999999999999999999999999877653  567888999999998


Q ss_pred             CCCCCCChHHHHHHHhc-----cCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEEEEecccccCcce---
Q 015729          116 DWGEGAKLDVLASKLAA-----DTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID---  184 (401)
Q Consensus       116 ~~~~~~d~~~le~~~~~-----~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~~~~~---  184 (401)
                      ++.+ +|++.++..+.+     .......++++++++||||.+++   +++|.++|++  ++++||+|++|......   
T Consensus       158 ~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~--~~i~ii~De~y~~l~~~~~~  234 (420)
T d1vp4a_         158 EDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEK--YDLFIVEDDPYGALRYEGET  234 (420)
T ss_dssp             ETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHH--TTCEEEEECSSTTCBCSSCC
T ss_pred             cccc-cccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhc--ccccccccchhhhccccCcc
Confidence            7654 688877665432     11012335567788999999986   5678899999  99999999998743221   


Q ss_pred             ----eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHH
Q 015729          185 ----FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLR  260 (401)
Q Consensus       185 ----~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~  260 (401)
                          ......+..++++|++|++..+.++|+++.++++++.+....            .... .     .++....+.+.
T Consensus       235 ~~~~~~~~~~~~~i~~~s~sk~~~~G~RiG~~~~~~~~i~~l~~~~------------~~~~-~-----~~~~~~q~~~a  296 (420)
T d1vp4a_         235 VDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAK------------QSAD-L-----CSPAITHRLAA  296 (420)
T ss_dssp             CCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECCHHHHHHHHHHH------------HHHH-S-----SCCHHHHHHHH
T ss_pred             cccccccccccceeEEeccccccccccccccccccchhhhhhhhhh------------hhcc-c-----cCchhhhhhhh
Confidence                111223566788889998765566899999999887665321            1111 1     13332222222


Q ss_pred             HHHHH-HHHhcHHHHHHHHHHHHHHHHHHHHHc-----CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEE
Q 015729          261 AALDL-IFEEGLENVIERHRRLGKATRLAVEAW-----GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSL  334 (401)
Q Consensus       261 ~al~~-~~~~g~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v  334 (401)
                      ..++. .....+++.++++++..+.+.+.|++.     |+++..+    ..+.++|+++|++.+..++.+.|.++ ||.+
T Consensus       297 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p----~gg~f~~~~~~~~~d~~~~~~~l~~~-gV~v  371 (420)
T d1vp4a_         297 RYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKS----EGGLFIWLTLPEGFDTWEMFEYAKRK-KVFY  371 (420)
T ss_dssp             HHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCC----SBSSEEEEECCTTCCTTTTHHHHHHH-TEEC
T ss_pred             hhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCcEEecC----CceEEEEEECCCCCCHHHHHHHHHHC-CeEE
Confidence            22221 111224566777888888888888774     5555544    34568899998888888899888776 9999


Q ss_pred             ccCCCCC----CCcEEEEeecccCCHHHHHHHHHHHHHHHHhcC
Q 015729          335 GLGLNKV----AGKVFRIGHLGHLNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       335 ~~g~~~~----~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~~  374 (401)
                      .||....    ..+++||++. ..+++++++++++|++++++.+
T Consensus       372 ~PG~~F~~~~~~~~~iRls~~-~~~~e~l~~a~~rL~~~l~~~~  414 (420)
T d1vp4a_         372 VPGRVFKVYDEPSPSMRLSFC-LPPDEKIVEGIKRLREVVLEYG  414 (420)
T ss_dssp             EEGGGGCTTCCCCSEEEEECS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred             EechhhCCCCCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHHHhh
Confidence            9984321    2468999764 4688999999999999998764

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.96  E-value=2.8e-27  Score=225.05  Aligned_cols=303  Identities=13%  Similarity=0.102  Sum_probs=212.2

Q ss_pred             HHHHHHHHHHHhc------CC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCC
Q 015729           44 TKTLLEDIKKIFK------TT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD  116 (401)
Q Consensus        44 ~~~l~~~la~~~g------~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~  116 (401)
                      ..+||+.++++++      .+ ++++|++|+|+++|+..++.++++|||+|+++.|+|+.+. .......|++++.++++
T Consensus        86 ~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~-~~~~~~~g~~~v~v~~~  164 (431)
T d1m7ya_          86 LPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFD-RDLKWRTGVEIVPIHCT  164 (431)
T ss_dssp             CHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHH-HHTTTTTCCEEEEEECC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHH-HHHHHhcCceecccccc
Confidence            4577877777654      22 3456999999999999999999999999999999876654 22233468899999987


Q ss_pred             CC--CCCChHHHHHHHhc--cCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEEEEecccccCcce----e
Q 015729          117 WG--EGAKLDVLASKLAA--DTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFLVDGVSSICAID----F  185 (401)
Q Consensus       117 ~~--~~~d~~~le~~~~~--~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~~~~~----~  185 (401)
                      .+  ..+|++.+++.+++  ....+++++++++|+||||.+++   +++|.++|++  +|++||+|++|+.....    .
T Consensus       165 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~--~~~~vI~De~Y~~~~~~~~~~~  242 (431)
T d1m7ya_         165 SSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVED--KGIHLISDEIYSGTAFSSPSFI  242 (431)
T ss_dssp             GGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH--HTCEEEEECTTGGGCCSSSCCC
T ss_pred             chhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccc--cCcceeecccccccccCCCCCC
Confidence            64  35788888887754  22246889999999999999997   6678888888  99999999998743211    0


Q ss_pred             c-------------cCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCC
Q 015729          186 R-------------MDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTP  251 (401)
Q Consensus       186 ~-------------~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  251 (401)
                      +             .......+++.|.+|.++ .+..+|+++.+++.+......               ..   .+..++
T Consensus       243 s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~---------------~~---~~~~~~  304 (431)
T d1m7ya_         243 SVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK---------------MS---SFGLVS  304 (431)
T ss_dssp             CHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHH---------------HG---GGSCCC
T ss_pred             CHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHH---------------Hh---cccccc
Confidence            0             011234688899999985 234579999988765433211               00   001112


Q ss_pred             cHHHHHHHHHHHHH--HHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCC------CHHHHH
Q 015729          252 SIQLLYGLRAALDL--IFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHI------NSSEIV  323 (401)
Q Consensus       252 ~~~~~~a~~~al~~--~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~  323 (401)
                      +. ...++.+.+..  .....+++.+++++++.+.+.+.|++.|+++..+    ..+.++|++++...      +..+++
T Consensus       305 ~~-~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~~~p----~gg~f~w~~l~~~~~~~~~~~~~~l~  379 (431)
T d1m7ya_         305 SQ-TQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNG----NAGLFCWVDMRHLLRSNTFEAEMELW  379 (431)
T ss_dssp             HH-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCC----CSSSEEEEECGGGSSSSSHHHHHHHH
T ss_pred             cc-ccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcCCcEEecC----CceeEEEEECccccccCcccCHHHHH
Confidence            22 22222222221  1122356677788888889999998889888765    34568888885422      234688


Q ss_pred             HHHHhhCCeEEccCCC--CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          324 RRAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       324 ~~L~~~~~i~v~~g~~--~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ++|.+++||.+.||..  ...++++||++ +..+++++++++++|++++++.
T Consensus       380 ~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~-a~~~e~~l~~al~rL~~~l~~~  430 (431)
T d1m7ya_         380 KKIVYEVHLNISPGSSCHCTEPGWFRVCF-ANLPERTLDLAMQRLKAFVGEY  430 (431)
T ss_dssp             HHHHHTSCEECEEGGGGTCSSTTEEEEEC-SSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCEEEEeccccCCCCCCEEEEEe-CcCCHHHHHHHHHHHHHHHHHh
Confidence            8888778999999843  33467999975 4467889999999999999763

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.96  E-value=1.4e-26  Score=218.52  Aligned_cols=301  Identities=16%  Similarity=0.121  Sum_probs=210.6

Q ss_pred             HHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCC
Q 015729           42 ALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESD  116 (401)
Q Consensus        42 ~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~  116 (401)
                      ....++|+.+++++    |.+ .++++++|+|+++++..++.+++++||+|++++|+|+.+.  ..+...|++++.++.+
T Consensus        71 ~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~--~~~~~~g~~~~~v~~~  148 (403)
T d1wsta1          71 KGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAI--QAFKYYDPEFISIPLD  148 (403)
T ss_dssp             SCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHH--HHHHTTCCEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhh--HHHhhccccceeEeec
Confidence            33456666666665    443 3456999999999999999999999999999999877664  5678889999999987


Q ss_pred             CCCCCChHHHH----HHHhccCCCCceEEEEEecCCCcccccch---HHHHHHhhhcCCCcEEEEecccccCcce-----
Q 015729          117 WGEGAKLDVLA----SKLAADTAHTIKAICIVHNETATGVTNNL---SKVRKLLDEYRHPALFLVDGVSSICAID-----  184 (401)
Q Consensus       117 ~~~~~d~~~le----~~~~~~~~~~~~~i~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~li~D~a~~~~~~~-----  184 (401)
                      ..+. +...+.    ....+.+ ..+.++++++++||||.+++.   ++|+++|++  +|++||+|++|......     
T Consensus       149 ~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~--~~~~li~De~y~~l~~~~~~~~  224 (403)
T d1wsta1         149 DKGM-RVDLLEEKLEELRKQGK-RVKIVYTVSTFQNPAGVTMSVDRRKKLLELANE--YDFLIVEDGPYSELRYSGEPTP  224 (403)
T ss_dssp             TTEE-CHHHHHHHHHHHHHTTC-CCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHH--TTCEEEEECTTTTCBCSSCCCC
T ss_pred             ccCC-ccccccccchhhhhccc-cccccccccccCCCCCccCCHHHHHHHHHHHHh--cCceeccccchhheecCCCCCC
Confidence            6542 222222    2222222 345677888999999999974   568888999  99999999998643211     


Q ss_pred             --eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHH
Q 015729          185 --FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAA  262 (401)
Q Consensus       185 --~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~a  262 (401)
                        ......+..+++.|.+|+++.+.++|+++.++++++.+....            ... ..     .++.....+..+.
T Consensus       225 ~~~~~~~~~~~i~~~S~SK~~~~G~RiG~~i~~~~~i~~~~~~~------------~~~-~~-----~~~~~~~~~~~~~  286 (403)
T d1wsta1         225 PIKHFDDYGRVIYLGTFSKILAPGFRIGWVAAHPHLIRKMEIAK------------QSI-DL-----CTNTFGQAIAWKY  286 (403)
T ss_dssp             CGGGGCSSSCEEEEEESTTTTCGGGCCEEEEECHHHHHHHHHHH------------HHH-HS-----SCCHHHHHHHHHH
T ss_pred             cccccCCCCcEEEEccccceecCcccccccccchHHHHHHHHHH------------hhh-cc-----ccccchhhhHHhh
Confidence              112344677899999999865567899999998877554310            001 11     1333222222222


Q ss_pred             HHH-HHHhcHHHHHHHHHHHHHHHHHHHHHc---CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCC
Q 015729          263 LDL-IFEEGLENVIERHRRLGKATRLAVEAW---GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGL  338 (401)
Q Consensus       263 l~~-~~~~g~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~  338 (401)
                      +.. ..+..+++.++.+.++++.+.+.|.+.   |+.+..+    ..+.++++.+|++.+...+.+.|.++ ||.+.||.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p----~gg~~~~~~~~~~~~~~~~~~~l~~~-gV~v~pg~  361 (403)
T d1wsta1         287 VENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKP----EGGMFVRVTLPEGIDTKLMMERAVAK-GVAYVPGE  361 (403)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCC----SBSSEEEEECCTTCCTTTTHHHHHHT-TEECEEGG
T ss_pred             hhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCC----CceeEEEEECCCCCCHHHHHHHHHHC-CEEEEech
Confidence            222 122235677888888888888888874   4454443    34568889999888888999999876 99999884


Q ss_pred             CC----CCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          339 NK----VAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       339 ~~----~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      ..    ...+++||++. ..+++++++++++|++++++
T Consensus       362 ~f~~~~~~~~~iRi~~~-~~~~~~l~~al~rl~~~l~~  398 (403)
T d1wsta1         362 AFFVHRDKKNTMRLNFT-YVPEETIREGVRRLAETIKE  398 (403)
T ss_dssp             GGSTTCCCCSEEEEECS-SSCHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCCCCCEEEEEec-CCCHHHHHHHHHHHHHHHHH
Confidence            32    23468999764 46899999999999999875

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=8.1e-27  Score=221.43  Aligned_cols=343  Identities=9%  Similarity=-0.061  Sum_probs=247.3

Q ss_pred             CCcCChHHHHHHHccCcCC----C-CCccHHHHHHHHHHHHHHHhcCCCC----ceEEecCChhHHHHHHHhcc------
Q 015729           16 GPVHIPDQVIRAMNRNNED----Y-RSPAVPALTKTLLEDIKKIFKTTSG----TPFLIPTTGTGAWESALTNT------   80 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~----~-~~~~~~~~~~~l~~~la~~~g~~~~----~~i~~~~g~t~a~~~~~~~~------   80 (401)
                      ..+..++.+.+.+....+.    . ..|...++..++.+.+++++|.+.+    ..-.+|+|||+|+..++.+.      
T Consensus        62 ~~t~~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~  141 (450)
T d1pmma_          62 CQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRK  141 (450)
T ss_dssp             SCCCCCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHH
Confidence            5677778888877775432    1 2355667788999999999998642    12588999999998876432      


Q ss_pred             ------CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc
Q 015729           81 ------LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        81 ------~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~  153 (401)
                            ......++++...|++  |.+.++..|++++.|+.++ ++.+|++++++++++    ++.+|+.+.++|.||.+
T Consensus       142 ~~~~~g~~~~~~~~~~~~~H~s--~~Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~----~t~~Vv~t~gtt~tG~~  215 (450)
T d1pmma_         142 RMEAAGKPTDKPNLVCGPVQIC--WHKFARYWDVELREIPMRPGQLFMDPKRMIEACDE----NTIGVVPTFGVTYTGNY  215 (450)
T ss_dssp             HHHHHTCCCSCCEEEESSCCHH--HHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCT----TEEEEECBBSCTTTCBB
T ss_pred             HhhhcCCCCCCceEEecccHHH--HHHHHHHcCCCceEeeecCCCCcCcHHHHHHHhhh----CceEEEeeeeeccCCCc
Confidence                  1122346666655544  5688999999999999876 478999999999985    45899999999999999


Q ss_pred             cchHHHHHHhhh----cCCCcEEEEecccccCcceecc-------CcccceEEEecCCCcccCCCcceEEEecHHHHH-H
Q 015729          154 NNLSKVRKLLDE----YRHPALFLVDGVSSICAIDFRM-------DEWGIDVALTGSQKALSLPTGMGIVCASPKALE-A  221 (401)
Q Consensus       154 ~~l~~i~~l~~~----~~~~~~li~D~a~~~~~~~~~~-------~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~-~  221 (401)
                      .|+++|.++|++    +.+|+|+++|+|++.+..++..       .-.++|.+.+|+||++.+|.|+|+++++++... .
T Consensus       216 dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~  295 (450)
T d1pmma_         216 EFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQ  295 (450)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCG
T ss_pred             cccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChhhccCCCCCeeEEEecChhhhhh
Confidence            999988877643    3489999999999877655432       234799999999999988999999999865421 1


Q ss_pred             hccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCC
Q 015729          222 SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQK  300 (401)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~  300 (401)
                      ....  ...|..     ..+. .....++.+...+.++..++..+...|++++.++..++++++.+.|++. ++++..+.
T Consensus       296 ~~~~--~~~yl~-----~~~~-~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~  367 (450)
T d1pmma_         296 ELVF--NVDYLG-----GQIG-TFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTG  367 (450)
T ss_dssp             GGCE--EEEETT-----EEEE-ECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEEC
T ss_pred             hccc--ccCcCC-----CCcC-CCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCC
Confidence            1100  000110     0000 1122334555666778888998989999999999999999999999997 67776543


Q ss_pred             CccCCceeEEEEcCC----CCCHHHHHHHHHhhCCeEEccCCCC---CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          301 EEWFSDTVTAVIVPS----HINSSEIVRRAWQRYNLSLGLGLNK---VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       301 ~~~~~~~~~~~~~~~----~~~~~~l~~~L~~~~~i~v~~g~~~---~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .......+++|.+.+    +++..++++.|.++ |..+.....+   .....+|+.+...+|++++|++++.|+++++++
T Consensus       368 ~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~-Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l  446 (450)
T d1pmma_         368 RPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLR-GWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYL  446 (450)
T ss_dssp             CTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTT-TCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEEecCCcccCCCCHHHHHHHHHHc-CCeeeccCcCCCcCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence            222233467788742    35677999999876 7655322111   112459999988899999999999999998765

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.1e-26  Score=215.26  Aligned_cols=285  Identities=14%  Similarity=0.094  Sum_probs=202.5

Q ss_pred             HHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCe-EEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCCh
Q 015729           45 KTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR-IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKL  123 (401)
Q Consensus        45 ~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~-vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~  123 (401)
                      .+|++.+++++|.++++ |++++|+++|+..++.+++.|||. |+++.|+|..+.  ..++..|++++.++.++++.+|+
T Consensus        59 ~~Lr~~ia~~~gv~pe~-I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~--~~~~~~g~~v~~~~~~~~~~~d~  135 (354)
T d1fg7a_          59 KAVIENYAQYAGVKPEQ-VLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS--VSAETIGVECRTVPTLDNWQLDL  135 (354)
T ss_dssp             HHHHHHHHHHHTSCGGG-EEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHH--HHHHHHTCEEEECCCCTTSCCCH
T ss_pred             HHHHHHHHHHhCCChHH-eeeccCchHHHHHHHHHhhccccccccccccccccch--hhhhccCceeeccccccccccch
Confidence            58999999999998654 999999999999999999999985 777778665443  56777899999999988888999


Q ss_pred             HHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcce----eccCcccceEEEecC
Q 015729          124 DVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAID----FRMDEWGIDVALTGS  199 (401)
Q Consensus       124 ~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~----~~~~~~~~di~~~s~  199 (401)
                      ++++.++.     +++++++++|+||||.+++.+++..++...+++.++++|+++......    .........+++.|.
T Consensus       136 ~~l~~~~~-----~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~~~~~~~~~~~iv~~S~  210 (354)
T d1fg7a_         136 QGISDKLD-----GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTL  210 (354)
T ss_dssp             HHHHTSCT-----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEES
T ss_pred             hhhhhccc-----ccceeeccCCCccceeEeeecccccccccccccccccccccchhhccccccchhhcccccceEEeCC
Confidence            99887653     579999999999999999877666655554467788888876533211    122234456788999


Q ss_pred             CCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 015729          200 QKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERH  278 (401)
Q Consensus       200 ~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~  278 (401)
                      +|.++ ++.++|+++++++.++.+.....                    .++.+......+.+++..-.........+++
T Consensus       211 SK~~~laGlRiGy~i~~~~~i~~l~~~~~--------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  270 (354)
T d1fg7a_         211 SKAFALAGLRCGFTLANEEVINLLMKVIA--------------------PYPLSTPVADIAAQALSPQGIVAMRERVAQI  270 (354)
T ss_dssp             SSTTCCGGGCCEEEEECHHHHHHHHHHSC--------------------SSCSCHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred             ccccCCCccccccccccchhhhhhhhhcC--------------------ccchhhHHHHHHHHHHhhhccccccccchhh
Confidence            99984 33457999999998887654211                    1122322222222222211111234556667


Q ss_pred             HHHHHHHHHHHHHcCC-ccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCC-CCCCcEEEEeecccCCH
Q 015729          279 RRLGKATRLAVEAWGL-KNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLN-KVAGKVFRIGHLGHLNE  356 (401)
Q Consensus       279 ~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~-~~~~~~~Ri~~~~~~~~  356 (401)
                      .+.++.+.+.|.+++. ....+    ....+++++++   ++.++.+.|.++ ||.|+++.. +..++++||++ +  ++
T Consensus       271 ~~~r~~l~~~l~~~~~~~~~~p----~~~~f~~~~~~---~~~~~~~~L~~~-gIlvr~~~~~~~~~~~lRisi-g--t~  339 (354)
T d1fg7a_         271 IAEREYLIAALKEIPCVEQVFD----SETNYILARFK---ASSAVFKSLWDQ-GIILRDQNKQPSLSGCLRITV-G--TR  339 (354)
T ss_dssp             HHHHHHHHHHHHHSTTEEEECC----CSSSEEEEEET---THHHHHHHHHHT-TEECEECTTSTTCTTEEEEEC-C--CH
T ss_pred             hhHHHHHHHHHHhCCCcceeCC----CCceEEEEeCC---CHHHHHHHHHHC-CcEEecCCCCCCCCCEEEEEe-C--CH
Confidence            7888888889988743 33322    12347788885   577899999876 999988744 33467999975 4  78


Q ss_pred             HHHHHHHHHHHH
Q 015729          357 LQLLGCLAGVEM  368 (401)
Q Consensus       357 ~di~~~~~~i~~  368 (401)
                      +|.++++++|++
T Consensus       340 ee~~~~l~aLka  351 (354)
T d1fg7a_         340 EESQRVIDALRA  351 (354)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999988863

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=6e-27  Score=219.33  Aligned_cols=325  Identities=13%  Similarity=0.038  Sum_probs=224.8

Q ss_pred             ccccCC-C-cCChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHh----cCC--CCceEEecCChhHHHHHHHhccC
Q 015729           11 HLFVPG-P-VHIPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIF----KTT--SGTPFLIPTTGTGAWESALTNTL   81 (401)
Q Consensus        11 ~~~~~~-p-~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----g~~--~~~~i~~~~g~t~a~~~~~~~~~   81 (401)
                      ..++.| | .++|+.+++++.+.... ..+|.......+||+.+++++    |.+  +++++++|+|+++|+..++.++.
T Consensus        29 i~l~~G~Pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~  108 (382)
T d1u08a_          29 INLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV  108 (382)
T ss_dssp             EECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC
T ss_pred             EEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhcc
Confidence            445554 3 24456677777664322 223444444556667666654    554  33459999999999999999999


Q ss_pred             CCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC-CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchH---
Q 015729           82 SPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLS---  157 (401)
Q Consensus        82 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~---  157 (401)
                      ++||.|+++++.|+.+.  ......|++++.++.+.+ +.+|++++++...    ++++++++++|+||||.+++.+   
T Consensus       109 ~~gd~vl~~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~l~~P~NPtG~v~~~~~~~  182 (382)
T d1u08a_         109 RNGDEVICFDPSYDSYA--PAIALSGGIVKRMALQPPHFRVDWQEFAALLS----ERTRLVILNTPHNPSATVWQQADFA  182 (382)
T ss_dssp             CTTCEEEEEESCCTTHH--HHHHHTTCEEEEEECCTTTCCCCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             cccceEEEecccccchh--hhhhhccccceecccccccccCCHHHHhhhhc----cCccEEEECCCCcccccccccccch
Confidence            99999999999887764  456778888888877654 4678999988776    4679999999999999999754   


Q ss_pred             HHHHHhhhcCCCcEEEEecccccCccee----cc----CcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCC
Q 015729          158 KVRKLLDEYRHPALFLVDGVSSICAIDF----RM----DEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSV  228 (401)
Q Consensus       158 ~i~~l~~~~~~~~~li~D~a~~~~~~~~----~~----~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~  228 (401)
                      +|.++|++  ++++++.|+.+.......    ..    ......+++.|.+|.++ .+.++|+++++++..+.+....  
T Consensus       183 ~l~~~~~~--~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~~~~~~~~~~~--  258 (382)
T d1u08a_         183 ALWQAIAG--HEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVH--  258 (382)
T ss_dssp             HHHHHHTT--SCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHH--
T ss_pred             hhhhhhcc--ccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhhccchhHHHHHhhh--
Confidence            56666777  999999998876432211    00    11224688888889884 3345799999998877654321  


Q ss_pred             ccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCcee
Q 015729          229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTV  308 (401)
Q Consensus       229 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~  308 (401)
                                 ...     ..+.+.....++..+++.- ...++..+++++++++.+.+.+...|+++..+    ..+.+
T Consensus       259 -----------~~~-----~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p----~gg~~  317 (382)
T d1u08a_         259 -----------QYL-----TFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNESRLEILPC----EGTYF  317 (382)
T ss_dssp             -----------HHH-----TSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSSSCEECCC----CBSSE
T ss_pred             -----------ccc-----ccccccccccccccccccc-hHHHHHHHHHHHhhhhhhhhhhccCCcEEecC----CceEE
Confidence                       111     1124443334444444321 12256677778888888888877668877654    34568


Q ss_pred             EEEEcCC--CCCHHHHHHHHHhhCCeEEccCCCC----CCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          309 TAVIVPS--HINSSEIVRRAWQRYNLSLGLGLNK----VAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       309 ~~~~~~~--~~~~~~l~~~L~~~~~i~v~~g~~~----~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      +|+++|.  ..+..++++.|++++||.+.||...    ...+++||++.  .+++++++++++|++
T Consensus       318 ~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~--~~~e~l~~al~RL~~  381 (382)
T d1u08a_         318 LLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ  381 (382)
T ss_dssp             EEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred             EEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEe--CCHHHHHHHHHHHhC
Confidence            8899874  4678899999887789999999432    23468999874  388999999999864

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=8.5e-27  Score=218.97  Aligned_cols=331  Identities=18%  Similarity=0.143  Sum_probs=225.4

Q ss_pred             cccccCC-C-cCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHh----cCC-CCceEEecCChhHHHHHHHhccCC
Q 015729           10 NHLFVPG-P-VHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIF----KTT-SGTPFLIPTTGTGAWESALTNTLS   82 (401)
Q Consensus        10 ~~~~~~~-p-~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~~~~~   82 (401)
                      .+.++.| | .+.|+.+++++.+......+|.......+||+.+++++    |.+ .++++++|+|+++++..++.+++.
T Consensus        30 vi~l~~G~p~~~~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~~  109 (389)
T d2gb3a1          30 IHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIAN  109 (389)
T ss_dssp             EEECSSCCCCSCCCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCC
T ss_pred             EEECCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEeccccccccccccccccc
Confidence            3455544 3 35678888998875544334444455667777777766    433 345699999999999999999999


Q ss_pred             CCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCC-CChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHH
Q 015729           83 PGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEG-AKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSK  158 (401)
Q Consensus        83 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~  158 (401)
                      +||.|++++|.|+.+.  ..++..|++++.++.+.++. .+.+.+.....    ++++++++++|+||||.+++   +++
T Consensus       110 ~gd~V~i~~P~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~nP~NPtG~~~s~~~~~~  183 (389)
T d2gb3a1         110 PGDEILVLEPFYANYN--AFAKIAGVKLIPVTRRMEEGFAIPQNLESFIN----ERTKGIVLSNPCNPTGVVYGKDEMRY  183 (389)
T ss_dssp             TTCEEEEEESCCTHHH--HHHHHHTCEEEEEECCGGGTSCCCTTGGGGCC----TTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred             CCCeEEEeCCCCcccc--ccccccCccccccccccccccchhhhhhhhcc----cCccEEEeCCCCccccccchHHHHHH
Confidence            9999999999877654  56777899999998876542 33333443333    57899999999999999987   677


Q ss_pred             HHHHhhhcCCCcEEEEecccccCccee-----ccCcccceEEEecCCCcccCC-CcceEEEecHHHHHHhccCCCCcccc
Q 015729          159 VRKLLDEYRHPALFLVDGVSSICAIDF-----RMDEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTAKSVRVFF  232 (401)
Q Consensus       159 i~~l~~~~~~~~~li~D~a~~~~~~~~-----~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~~~~~~~~~  232 (401)
                      |.++|++  +|++||+|+++......-     ........+++.|.+|.++.+ ..+|+++++++.+......       
T Consensus       184 i~~~a~~--~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~-------  254 (389)
T d2gb3a1         184 LVEIAER--HGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMK-------  254 (389)
T ss_dssp             HHHHHHH--TTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHH-------
T ss_pred             HHhhccc--CCEEEEEeccccccccccccccccccccccccccccccccccCcccceeeeeccchhHHHHHhh-------
Confidence            8899999  999999999986443211     111223466777888877432 3469999876643322210       


Q ss_pred             chHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEE
Q 015729          233 DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVI  312 (401)
Q Consensus       233 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~  312 (401)
                              ...+   ..+++.....++..++... +..++..+++++++++.+.+.|++.|+......   ..+.++|++
T Consensus       255 --------~~~~---~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p---~~g~~~~~~  319 (389)
T d2gb3a1         255 --------LAQG---RLAPPLLEQIGSVGLLNLD-DSFFDFVRETYRERVETVLKKLEEHGLKRFTKP---SGAFYITAE  319 (389)
T ss_dssp             --------HHHH---SCCCCHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCC---SBSSEEEEE
T ss_pred             --------hhhc---ccccccccccccccccccc-chhcccccccccccchhhhhhhhhhccccccCC---CceEEEEEe
Confidence                    1111   1234443333333333211 223677888899999999999999865543321   345688899


Q ss_pred             cCCCCCHHHHHHHHHhh-----CCeEEccCCCC-----CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          313 VPSHINSSEIVRRAWQR-----YNLSLGLGLNK-----VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       313 ~~~~~~~~~l~~~L~~~-----~~i~v~~g~~~-----~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +|.. ++.++++.|+++     .||.+.+|...     ...+++||++.  .+++++++++++|++.++++
T Consensus       320 lp~~-~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~--~~~~~l~~a~~~L~~~lk~f  387 (389)
T d2gb3a1         320 LPVE-DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMF  387 (389)
T ss_dssp             CSSS-CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCC-CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEc--CCHHHHHHHHHHHHHHHHHh
Confidence            8654 788899988754     35677777321     12468999864  48899999999999999875

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.6e-26  Score=217.55  Aligned_cols=321  Identities=13%  Similarity=0.048  Sum_probs=220.4

Q ss_pred             cCChHHHHHHHccCcCCC---CCccHHHHHHHHHHHHHHHh----cCCC--CceEEecCChhHHHHHHHhccCCCCCeEE
Q 015729           18 VHIPDQVIRAMNRNNEDY---RSPAVPALTKTLLEDIKKIF----KTTS--GTPFLIPTTGTGAWESALTNTLSPGDRII   88 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~~~---~~~~~~~~~~~l~~~la~~~----g~~~--~~~i~~~~g~t~a~~~~~~~~~~~gd~vl   88 (401)
                      .++|+.+++++.+.....   ..|.......++|+.+++++    |.+-  .++|++|+|+++|+..++.+++++||.|+
T Consensus        37 ~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vl  116 (418)
T d1w7la_          37 FPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVI  116 (418)
T ss_dssp             SCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEE
T ss_pred             CCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhccCCceee
Confidence            355677777776643221   12333344456666666554    6552  34699999999999999999999999999


Q ss_pred             EEcCCcchHHHHHHHHHcCCcEEEEeCCC------------CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc-
Q 015729           89 SFLIGQFSLLWIDQQQRLNFNVDVVESDW------------GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN-  155 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~------------~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~-  155 (401)
                      ++++.++.+.  ..+...|++.+.++..+            +..+|.++++....    ++++++++++++||||.+++ 
T Consensus       117 v~~p~~~~y~--~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~i~~~~p~NPtG~~~s~  190 (418)
T d1w7la_         117 IIEPFFDCYE--PMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT----SRTKALVLNTPNNPLGKVFSR  190 (418)
T ss_dssp             EEESCCTTHH--HHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCC----TTEEEEEEESSCTTTCCCCCH
T ss_pred             ccccccchhH--HHHHHcCCEeeccccccccccccccccccCcccchhhhhcccc----ccccceeccCcCCcccccccH
Confidence            9999777654  56777899888887643            22345556655544    46789999999999999986 


Q ss_pred             --hHHHHHHhhhcCCCcEEEEecccccCcc----e---eccCc-ccceEEEecCCCcccC-CCcceEEEecHHHHHHhcc
Q 015729          156 --LSKVRKLLDEYRHPALFLVDGVSSICAI----D---FRMDE-WGIDVALTGSQKALSL-PTGMGIVCASPKALEASKT  224 (401)
Q Consensus       156 --l~~i~~l~~~~~~~~~li~D~a~~~~~~----~---~~~~~-~~~di~~~s~~K~l~g-~~g~G~l~~~~~~~~~~~~  224 (401)
                        +++|.++|++  ++++||+|++|.....    .   ..... ....+++.|.+|.++. +.++|+++++++++..+..
T Consensus       191 ~~~~~i~~~a~~--~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~~~~~~~l~~  268 (418)
T d1w7la_         191 EELELVASLCQQ--HDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRT  268 (418)
T ss_dssp             HHHHHHHHHHHH--HTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--cCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCCcccccccchhhhhhhcc
Confidence              5678888888  9999999999865321    1   12222 2357889999998752 3457999999988776643


Q ss_pred             CCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHH---H---hcHHHHHHHHHHHHHHHHHHHHHcCCcccc
Q 015729          225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIF---E---EGLENVIERHRRLGKATRLAVEAWGLKNCT  298 (401)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~---~---~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~  298 (401)
                      ..               ...   ..+.+.....++..++..-.   +   ..+...+++++++++.+.+.|.+.|+++..
T Consensus       269 ~~---------------~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~  330 (418)
T d1w7la_         269 VH---------------QNS---VFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLI  330 (418)
T ss_dssp             HH---------------HTT---TSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred             cc---------------ccc---cccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhcCCcccC
Confidence            21               001   11233333333333433221   1   125667888888999999999988988766


Q ss_pred             CCCccCCceeEEEEcCC-------------CCCHHHHHHHHHhhCCeEEccCCCC-------CCCcEEEEeecccCCHHH
Q 015729          299 QKEEWFSDTVTAVIVPS-------------HINSSEIVRRAWQRYNLSLGLGLNK-------VAGKVFRIGHLGHLNELQ  358 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~L~~~~~i~v~~g~~~-------~~~~~~Ri~~~~~~~~~d  358 (401)
                      +.    .+.++|+++++             ..+..++++.|++++||.+.||...       ...+++||++.  .++++
T Consensus       331 P~----gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~--~~~~~  404 (418)
T d1w7la_         331 PQ----GSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFV--KDEAT  404 (418)
T ss_dssp             CS----BSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECC--CCHHH
T ss_pred             CC----ceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEEc--CCHHH
Confidence            53    45678887641             1235678888887779999998432       12468999864  38899


Q ss_pred             HHHHHHHHHHHH
Q 015729          359 LLGCLAGVEMIL  370 (401)
Q Consensus       359 i~~~~~~i~~~l  370 (401)
                      +++++++|++..
T Consensus       405 l~~a~~rl~~~~  416 (418)
T d1w7la_         405 LQAMDEKLRKWK  416 (418)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998864

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.95  E-value=4.2e-26  Score=211.54  Aligned_cols=309  Identities=13%  Similarity=0.061  Sum_probs=209.1

Q ss_pred             CcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcch
Q 015729           17 PVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFS   96 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~   96 (401)
                      |.++|+.+++++.+....-..| +.....+|++.+++++|.++.+ |++++|+++++..++..+.  ++.+++..|.+..
T Consensus        33 p~~~p~~~~~a~~~~~~~~~~Y-p~~~~~~Lr~aia~~~~v~~~~-I~~~~g~~~~~~~~~~~~~--~~~~~v~~p~~~~  108 (355)
T d1lc5a_          33 PLGMPVSVKRALIDNLDCIERY-PDADYFHLHQALARHHQVPASW-ILAGNGETESIFTVASGLK--PRRAMIVTPGFAE  108 (355)
T ss_dssp             TTCCCHHHHHHHHHTGGGGGSC-CCTTCHHHHHHHHHHHTSCGGG-EEEESSHHHHHHHHHHHHC--CSEEEEEESCCTH
T ss_pred             CCCCCHHHHHHHHHHHHHhccC-CCCChHHHHHHHHHHhCCCHHH-EEecccHHHHHHHHHhhhc--cccccccCCccce
Confidence            6778898999988855332112 1122358999999999997654 9999999998887665543  3445566665554


Q ss_pred             HHHHHHHHHcCCcEEEEeCCCCCCCC-hHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEE
Q 015729           97 LLWIDQQQRLNFNVDVVESDWGEGAK-LDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALF  172 (401)
Q Consensus        97 ~~~~~~~~~~g~~~~~v~~~~~~~~d-~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~l  172 (401)
                      +.  ......+++++.++++.+...+ .+++++++.    ++++++++++|+||||.+++   +.+|.++|++  +++++
T Consensus       109 ~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~--~~~~l  180 (355)
T d1lc5a_         109 YG--RALAQSGCEIRRWSLREADGWQLTDAILEALT----PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKS--LNINL  180 (355)
T ss_dssp             HH--HHHHHTTCEEEEEECCGGGTTCCCTTHHHHCC----TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHH--HTCEE
T ss_pred             ec--cccccccccceeeeeeccCCccceeeeeeccc----cccceeeeecccCcccccchhhhhhhhhhhccc--ccccc
Confidence            33  4456678888888886543222 244555554    46799999999999999997   5567788888  99999


Q ss_pred             EEecccccCcce-----eccCcccceEEEecCCCccc-CCCcceEEEecHHHH-HHhccCCCCccccchHHHHHHhhcCC
Q 015729          173 LVDGVSSICAID-----FRMDEWGIDVALTGSQKALS-LPTGMGIVCASPKAL-EASKTAKSVRVFFDWKDYIKFYNLGT  245 (401)
Q Consensus       173 i~D~a~~~~~~~-----~~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~  245 (401)
                      |+|+++......     .........+++.|.+|+++ ++..+|+++++++.. ..+....                 . 
T Consensus       181 i~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~-----------------~-  242 (355)
T d1lc5a_         181 ILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQ-----------------M-  242 (355)
T ss_dssp             EEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHS-----------------C-
T ss_pred             ccccceeeeeeecccccccccccccceeecccccccccccccccceeccchhhhHHHHhhc-----------------C-
Confidence            999998643211     11223345789999999884 334479999876543 3222110                 1 


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHHHHH
Q 015729          246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVR  324 (401)
Q Consensus       246 ~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  324 (401)
                        +++.+.....++.++++.  ...+...++++++..+++.+.|.++ ++.+.+.     .+.++++.++.  +..++++
T Consensus       243 --~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~-----~~~f~~~~~~~--~~~~~~~  311 (355)
T d1lc5a_         243 --PWSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLTVYPG-----RANYLLLRCER--EDIDLQR  311 (355)
T ss_dssp             --TTCSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCC-----SSSEEEEEESC--TTCCHHH
T ss_pred             --Cccccccccccccccccc--cchhHHHHHHHHHHHHHHHHHHhhcCCcEECCC-----CCEEEEEECCC--CHHHHHH
Confidence              223444444444444432  2235667788888888999999887 6665432     23467788864  5567888


Q ss_pred             HHHhhCCeEEccCCC--CCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          325 RAWQRYNLSLGLGLN--KVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       325 ~L~~~~~i~v~~g~~--~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      .|.++ ||.|+++..  ....+++||++ +  +++|+++++++|+++|
T Consensus       312 ~L~~~-gv~vr~~~~f~~~~~~~iRis~-~--~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         312 RLLTQ-RILIRSCANYPGLDSRYYRVAI-R--SAAQNERLLAALRNVL  355 (355)
T ss_dssp             HHHTT-TEECEECTTSTTCCTTEEEEEC-C--CHHHHHHHHHHHHHHC
T ss_pred             HHHHC-CcEEEeCccCCCCCCCEEEEEe-C--CHHHHHHHHHHHHHhC
Confidence            89866 999998843  23467999975 3  7899999999998864

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=2.4e-25  Score=204.51  Aligned_cols=305  Identities=15%  Similarity=0.087  Sum_probs=214.6

Q ss_pred             CcccccC-CCcCChHHHHHHHccCcCCC-CCccHHHHHHHHHHHHHHHhcCC--CCceEEecCChhHHHHHHHhccCCCC
Q 015729            9 KNHLFVP-GPVHIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFKTT--SGTPFLIPTTGTGAWESALTNTLSPG   84 (401)
Q Consensus         9 ~~~~~~~-~p~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~g~~--~~~~i~~~~g~t~a~~~~~~~~~~~g   84 (401)
                      ..+|... -|.++|+.+++++.+..... ..+.+.....+||+.++++++..  ++++|++++|+++++..++.    ++
T Consensus        21 ~~~l~~~enp~~~p~~i~~~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~l~~----~~   96 (334)
T d2f8ja1          21 KTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMML----MF   96 (334)
T ss_dssp             SEECSSCCCSSCCCHHHHHHHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHHHHH----HS
T ss_pred             ceEEECCCCCCCCCHHHHHHHHHHhhcchhcCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHHHHHhh----hc
Confidence            4455444 57788888888877654331 11112234678999999999765  44569999999999987665    46


Q ss_pred             CeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhh
Q 015729           85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLD  164 (401)
Q Consensus        85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~  164 (401)
                      |+|++.+|+|+.+.  ..++..|++++.++.+.+...+.        ... ++++++++++|+||||.+++.+++.++++
T Consensus        97 d~v~i~~P~y~~~~--~~~~~~g~~~v~v~~~~~~~~~~--------~~~-~~~~~l~l~nP~NPtG~~~s~~~l~~~~~  165 (334)
T d2f8ja1          97 DRSVFFPPTYSCYR--IFAKAVGAKFLEVPLTKDLRIPE--------VNV-GEGDVVFIPNPNNPTGHVFEREEIERILK  165 (334)
T ss_dssp             SEEEECSSCCHHHH--HHHHHHTCCEEECCCCTTSCCCC--------CCC-CTTEEEEEESSCTTTCCCCCHHHHHHHHT
T ss_pred             cccccccccccccc--cchhccCCccccccccccccccc--------ccc-ccceEEEecccccccceeecHHHhhcccc
Confidence            99999999766553  56778899999999987654321        111 46799999999999999999988888754


Q ss_pred             hcCCCcEEEEecccccCcc---eeccCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhccCCCCccccchHHHHHH
Q 015729          165 EYRHPALFLVDGVSSICAI---DFRMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKF  240 (401)
Q Consensus       165 ~~~~~~~li~D~a~~~~~~---~~~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
                         +++++|+|+++.....   ..........+++.|.+|+++ .+.++|+++.++++..++...+.             
T Consensus       166 ---~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l~~~~~-------------  229 (334)
T d2f8ja1         166 ---TGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRL-------------  229 (334)
T ss_dssp             ---TTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEEECHHHHHHHHHHSC-------------
T ss_pred             ---ceeEEeecccchhhcccccccccccCceEEEEecCccccchhhhhhhhcccchHHHHHHHHhhc-------------
Confidence               6889999988653221   111223346788999999875 23457999999999887754321             


Q ss_pred             hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHH
Q 015729          241 YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSS  320 (401)
Q Consensus       241 ~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (401)
                             .+..+.....++.+.++.  .+.++..++++.++++.+.+.|+++|+++..++    . .++++.++.. +.+
T Consensus       230 -------~~~~s~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~----g-~f~~~~~~~~-~~~  294 (334)
T d2f8ja1         230 -------PFNVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMGYRITDSR----G-NFVFVFMEKE-EKE  294 (334)
T ss_dssp             -------TTCSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCC----S-SEEEEECCHH-HHH
T ss_pred             -------ccccchhhhhhccccccc--ccchhhHHHHHHHHHHHHHHHHHHCCCeECCCC----c-eEEEEECCCC-CHH
Confidence                   112333333333333332  223567788889999999999999998876542    2 3567777543 778


Q ss_pred             HHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          321 EIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       321 ~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      ++.+.|.++ ||.++++     .+++||++ +  +.+|+++++++|++
T Consensus       295 ~~~~~L~~~-GI~vr~~-----~~~vRis~-g--~~ee~~~l~~~l~~  333 (334)
T d2f8ja1         295 RLLEHLRTK-NVAVRSF-----REGVRITI-G--KREENDMILRELEV  333 (334)
T ss_dssp             HHHHHHHHT-TEECEEE-----TTEEEEEC-C--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHC-CCEECCC-----CCeEEEEc-C--CHHHHHHHHHHHhc
Confidence            899999876 9998643     46899975 4  78889999988875

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.93  E-value=2.6e-24  Score=200.89  Aligned_cols=326  Identities=14%  Similarity=0.128  Sum_probs=219.6

Q ss_pred             ChHHHHHHHccCcCC-CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCCCeEEEEcCCcchH
Q 015729           20 IPDQVIRAMNRNNED-YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSL   97 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~   97 (401)
                      +.++-++++.+.... ....  +....++++.+++++|.+.   +++++|||.|+.+++.++ +++||+|+++...|.+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~--G~~v~~~E~~la~~~g~~~---ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~   84 (376)
T d1mdoa_          10 MGAEELAAVKTVLDSGWITT--GPKNQELEAAFCRLTGNQY---AVAVSSATAGMHIALMALGIGEGDEVITPSMTWVST   84 (376)
T ss_dssp             CCHHHHHHHHHHHHHTCCSS--SHHHHHHHHHHHHHHCCSE---EEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHH
T ss_pred             CCHHHHHHHHHHHhcCCCcC--CHHHHHHHHHHHHHHCcCe---EEEeCCHHHHHHHHHHHhCCCCCCEEEEeccccccc
Confidence            444445555553221 1122  4567899999999999975   788899999999999887 89999999999987776


Q ss_pred             HHHHHHHHcCCcEEEEeCCCC-CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEec
Q 015729           98 LWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDG  176 (401)
Q Consensus        98 ~~~~~~~~~g~~~~~v~~~~~-~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~  176 (401)
                      .  ......|++++.++++++ +.+|++.+++++++    ++++|+++|   ..|...|+++|.++|++  +|++||+|+
T Consensus        85 ~--~ai~~~g~~pv~~d~~~~~~~~d~~~l~~~i~~----~tkaIi~~h---~~G~~~~~~~i~~i~~~--~~i~vIeD~  153 (376)
T d1mdoa_          85 L--NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP----QTKAIIPVH---YAGAPADLDAIYALGER--YGIPVIEDA  153 (376)
T ss_dssp             H--HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT----TEEEECCBC---GGGCCCCHHHHHHHHHH--HTCCBCEEC
T ss_pred             c--cchhccccceeeecccccccCCCHHHHHHhcCC----CCeEEEEeC---CCCCccchhHHHHHHHh--cCceEEecc
Confidence            5  446778999999999875 57899999999974    679998875   57999999999999999  999999999


Q ss_pred             ccccCcceec--cCcccceEEEecCCCcccCCCcceEEEecHH-HHHHhccCCCCccccchH-----HHHHHhh---cCC
Q 015729          177 VSSICAIDFR--MDEWGIDVALTGSQKALSLPTGMGIVCASPK-ALEASKTAKSVRVFFDWK-----DYIKFYN---LGT  245 (401)
Q Consensus       177 a~~~~~~~~~--~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~---~g~  245 (401)
                      ||++|+...+  ....+..++.++.+|.+.++.| |+++++++ +.+++......+......     .....+.   .|.
T Consensus       154 a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~G-G~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~  232 (376)
T d1mdoa_         154 AHATGTSYKGRHIGARGTAIFSFHAIKNITCAEG-GIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGY  232 (376)
T ss_dssp             TTCTTCEETTEETTSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCC
T ss_pred             chhccCeeCCeecccccCccccCCCcCCCCCCCC-CEEEEechhHHHHHHhhcccCCcccccccccccccccccchhccc
Confidence            9999875432  2344556677788999976666 66666554 445444332211110000     0000011   111


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcC-CccccCC-CccCCceeEEEEcCC---CCCHH
Q 015729          246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWG-LKNCTQK-EEWFSDTVTAVIVPS---HINSS  320 (401)
Q Consensus       246 ~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~~~~~~~~~~~~~~~---~~~~~  320 (401)
                        ..-.+.     +.+++...+-..+++..++.+++++++.+.|.++. ..+.... .....+....+.++.   +.+.+
T Consensus       233 --n~~~~~-----~~Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd  305 (376)
T d1mdoa_         233 --KYNLPD-----LNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRD  305 (376)
T ss_dssp             --BCCCCH-----HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHH
T ss_pred             --ccccch-----hhhhhhhhhhhhhhHHHHHHhhhhhhhhhhcccccccccccccccccccccccccccccccchhhHH
Confidence              111222     33444444434567788889999999999998873 3332222 111222233333321   23556


Q ss_pred             HHHHHHHhhCCeEEccCCCCC---------------------CCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          321 EIVRRAWQRYNLSLGLGLNKV---------------------AGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       321 ~l~~~L~~~~~i~v~~g~~~~---------------------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                      ++.+.|.++ ||.++..+.+.                     ..+.+++.++..+|++|++++++.|++++
T Consensus       306 ~l~~~L~~~-gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~  375 (376)
T d1mdoa_         306 ALMASLKTK-GIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA  375 (376)
T ss_dssp             HHHHHHHHT-TBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHC-CCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence            899999876 99876553311                     12448998888899999999999999875

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.93  E-value=2.9e-24  Score=204.84  Aligned_cols=323  Identities=13%  Similarity=0.051  Sum_probs=224.8

Q ss_pred             CccHHHHHHHHHHHHHHHhcCCCC--------ceEEecCChhHHHHHHHhcc----C------CCC---------CeEEE
Q 015729           37 SPAVPALTKTLLEDIKKIFKTTSG--------TPFLIPTTGTGAWESALTNT----L------SPG---------DRIIS   89 (401)
Q Consensus        37 ~~~~~~~~~~l~~~la~~~g~~~~--------~~i~~~~g~t~a~~~~~~~~----~------~~g---------d~vl~   89 (401)
                      ++.......++.+.+++++|.+..        ...++++|||+|+..++.+-    +      .+|         -.|++
T Consensus       108 sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~  187 (476)
T d1js3a_         108 SPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYA  187 (476)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEE
T ss_pred             hhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEe
Confidence            445566677899999999998632        24689999999998876321    1      111         14677


Q ss_pred             EcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccC--CCCceEEEEEecCCCcccccchHHHHHHhhhcC
Q 015729           90 FLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT--AHTIKAICIVHNETATGVTNNLSKVRKLLDEYR  167 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~--~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~  167 (401)
                      +...|+|.  .+.+...|+.++.|+++.++++|+++|++.++++.  +..|.+|+.+.+++.+|.+.|+++|.++|++  
T Consensus       188 s~~~H~Si--~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~--  263 (476)
T d1js3a_         188 SDQAHSSV--ERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHE--  263 (476)
T ss_dssp             ETTCCHHH--HHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH--
T ss_pred             cccccHHH--HHHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHh--
Confidence            77777766  47788899999999999999999999999998743  1246678888999999999999999999999  


Q ss_pred             CCcEEEEecccccCcceeccCc------ccceEEEecCCCcccCCCcceEEEecHHHH-HHhccCCCCccccchHHHH-H
Q 015729          168 HPALFLVDGVSSICAIDFRMDE------WGIDVALTGSQKALSLPTGMGIVCASPKAL-EASKTAKSVRVFFDWKDYI-K  239 (401)
Q Consensus       168 ~~~~li~D~a~~~~~~~~~~~~------~~~di~~~s~~K~l~g~~g~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-~  239 (401)
                      +|+|+|+|+|++.....++..+      ..+|.+++++||+++.|.++|++++++... .........  +....... .
T Consensus       264 ~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~--~~~~~~~~~~  341 (476)
T d1js3a_         264 EDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPV--YLKHSHQGSG  341 (476)
T ss_dssp             TTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC--------------CC
T ss_pred             cCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChh--hhcccccccc
Confidence            9999999999886654443211      258999999999999999999999886442 222111110  11000000 0


Q ss_pred             ---HhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCC
Q 015729          240 ---FYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS  315 (401)
Q Consensus       240 ---~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~  315 (401)
                         .+.. ....++.. .....++.+++.+...|++++.++..++++++.+.|++. ++++..+.   .. .+++|++. 
T Consensus       342 ~~~~~~~-~~~~~sr~-~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p---~l-~iV~Fr~~-  414 (476)
T d1js3a_         342 LITDYRH-WQLPLGRR-FRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV---TL-GLVCFRLK-  414 (476)
T ss_dssp             SCCCGGG-SSSCSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC---CS-SEEEEEES-
T ss_pred             ccccccc-cccccchh-hHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCC---ce-EEEEEEcc-
Confidence               0000 01112222 234567889999999999999999999999999999997 88887542   23 35678873 


Q ss_pred             CCC--HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecc-cCCHHHHHHHHHHHHHHHHhc
Q 015729          316 HIN--SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG-HLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       316 ~~~--~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~-~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +.+  ..++.++|.+...+++.+.... ...++|+++.. .++++||+.+++.|++..+++
T Consensus       415 ~~d~~n~~l~~~l~~~G~~~~s~t~~~-g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~l  474 (476)
T d1js3a_         415 GSDGLNEALLERINSARKIHLVPCRLR-GQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL  474 (476)
T ss_dssp             SCHHHHHHHHHHHHHHTSCBCEEEEET-TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhcCCEEEeeeeEC-CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            222  2356677766634544433221 12358998764 567999999999999988764

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.92  E-value=3.7e-23  Score=187.26  Aligned_cols=332  Identities=15%  Similarity=0.138  Sum_probs=242.8

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCC-----------CccH-HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYR-----------SPAV-PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA   76 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~-----------~~~~-~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~   76 (401)
                      +...++++=-.+++.|++++.....+.+           +-.+ .++..-+.++..++||.+...  +-..||+.|+.++
T Consensus        24 ~~l~LiaSEN~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~an--Vqp~SGs~An~av  101 (405)
T d1kl1a_          24 AKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHAN--VQPHSGAQANMAV  101 (405)
T ss_dssp             HSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEEE--CCCSSHHHHHHHH
T ss_pred             cCceEeccCCcCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCcce--eeccCchHHHHHH
Confidence            4566778888889999999998553322           1112 333444667888999987532  4467899999999


Q ss_pred             HhccCCCCCeEEEEcC---CcchHHHHHHHHHcCCcEEEEeCCCC-CCCChHHHHHHHhccCCCCceEEEEEecCCCccc
Q 015729           77 LTNTLSPGDRIISFLI---GQFSLLWIDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVHNETATGV  152 (401)
Q Consensus        77 ~~~~~~~gd~vl~~~~---~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~  152 (401)
                      ..++++|||+|+..+.   ||.++...........+.+..+++.+ +.+|.+++++.+++   .+|++|++....+|  .
T Consensus       102 ~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~---~kPklIi~G~S~y~--r  176 (405)
T d1kl1a_         102 YFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARL---HRPKLIVAAASAYP--R  176 (405)
T ss_dssp             HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH---HCCSEEEECCSSCC--S
T ss_pred             HHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHh---hCcceEEecccccc--c
Confidence            9999999999999986   55554311112223456777777754 47999999999987   57899988865443  5


Q ss_pred             ccchHHHHHHhhhcCCCcEEEEecccccCc-----ceeccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCC
Q 015729          153 TNNLSKVRKLLDEYRHPALFLVDGVSSICA-----IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKS  227 (401)
Q Consensus       153 ~~~l~~i~~l~~~~~~~~~li~D~a~~~~~-----~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~  227 (401)
                      ..|++++.++|++  .|.++++|.+|..|.     .+-.+.  ++|++++|.||+|.||.| |++.++++..+++.....
T Consensus       177 ~~d~~~~reIad~--vga~l~~D~aH~~GLIa~g~~~~P~~--~aDvvt~tThKtlrGPrg-g~I~~~~~~~~~i~~avf  251 (405)
T d1kl1a_         177 IIDFAKFREIADE--VGAYLMVDMAHIAGLVAAGLHPNPVP--YAHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKAIF  251 (405)
T ss_dssp             CCCHHHHHHHHHH--HTCEEEEECTTTHHHHHTTSSCCSTT--TCSEEEEESSSTTCCCSC-EEEEECHHHHHHHHHHHT
T ss_pred             ccChHHHHHHHhh--hCCEEecchhhHhhhhhhhhcCChhh--hhhheeccccccccCCCC-ceEEecchhHHHHHhhhC
Confidence            6789999999999  999999999997553     333332  589999999999998886 999999888766643211


Q ss_pred             CccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCce
Q 015729          228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT  307 (401)
Q Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  307 (401)
                      +               |  .-+++....+++...++.......++...++..++++.|.+.|.+.|+++....   ....
T Consensus       252 P---------------g--~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv~gg---Td~H  311 (405)
T d1kl1a_         252 P---------------G--IQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGG---TDNH  311 (405)
T ss_dssp             T---------------T--TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSS
T ss_pred             c---------------c--cccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCceeecCC---Cccc
Confidence            1               1  133577788888888888766556788999999999999999999999998632   3345


Q ss_pred             eEEEEc-CCCCCHHHHHHHHHhhCCeEEccCCC------CCCCcEEEEeeccc----CCHHHHHHHHHHHHHHHHhc
Q 015729          308 VTAVIV-PSHINSSEIVRRAWQRYNLSLGLGLN------KVAGKVFRIGHLGH----LNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       308 ~~~~~~-~~~~~~~~l~~~L~~~~~i~v~~g~~------~~~~~~~Ri~~~~~----~~~~di~~~~~~i~~~l~~~  373 (401)
                      ++++.+ +.+.+..+..+.|. +.||.+....-      +.....+||+...-    ..++|++++.+.|.++++..
T Consensus       312 ~vlvdl~~~~~~g~~ae~~Le-~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~~  387 (405)
T d1kl1a_         312 LLLVDLRPQQLTGKTAEKVLD-EVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV  387 (405)
T ss_dssp             EEEEECGGGTCCHHHHHHHHH-HHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred             eeeccccccCCcHHHHHHHHH-HcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhcC
Confidence            666766 34677777777675 45998763321      22235699998652    35899999999999998654

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.92  E-value=1.1e-23  Score=198.24  Aligned_cols=320  Identities=9%  Similarity=-0.047  Sum_probs=204.8

Q ss_pred             CcCChHHHHHHHccCcCC--CCCccHHHHHHHHHHHHHHHhcCC-----CCceEEecCC--hh---HHHHHHHhccCCCC
Q 015729           17 PVHIPDQVIRAMNRNNED--YRSPAVPALTKTLLEDIKKIFKTT-----SGTPFLIPTT--GT---GAWESALTNTLSPG   84 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~-----~~~~i~~~~g--~t---~a~~~~~~~~~~~g   84 (401)
                      ..++.+.|.+++.+....  ..+|.......+||+.+++++...     .++.++.+.+  ++   .++..++.++++||
T Consensus        44 ~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pG  123 (401)
T d7aata_          44 KPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFS  123 (401)
T ss_dssp             CCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTC
T ss_pred             CCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCC
Confidence            345668888876653211  124555566778888888877543     2233444332  22   35566667889999


Q ss_pred             CeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCC--CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHH
Q 015729           85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDW--GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKV  159 (401)
Q Consensus        85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i  159 (401)
                      |+|++++|.|+.+.  ..++..|++++.+++..  ++..+++.+.+.+...+ ++++++++++|+||||.+++   +++|
T Consensus       124 d~Vlv~~P~y~~y~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iii~~p~NPTG~~~s~e~~~~l  200 (401)
T d7aata_         124 RDVYLPKPSWGNHT--PIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIP-EKSIILLHACAHNPTGVDPRQEQWKEL  200 (401)
T ss_dssp             CEEEEEESCCTTHH--HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSC-TTCEEEEESSSCTTTCCCCCHHHHHHH
T ss_pred             ceEEEecCCCcchh--hHHHHcCCeEEEEeccccccccccHHHHHHHHhcCC-CceEEEEecCCCCCccccCCHHHHHHH
Confidence            99999999877764  56788999999999744  34568888888776544 57889999999999999996   5678


Q ss_pred             HHHhhhcCCCcEEEEecccccCccee---------ccC-cccceEEEecCCCcccCCC--cceEEEecHHHHHHhccCCC
Q 015729          160 RKLLDEYRHPALFLVDGVSSICAIDF---------RMD-EWGIDVALTGSQKALSLPT--GMGIVCASPKALEASKTAKS  227 (401)
Q Consensus       160 ~~l~~~~~~~~~li~D~a~~~~~~~~---------~~~-~~~~di~~~s~~K~l~g~~--g~G~l~~~~~~~~~~~~~~~  227 (401)
                      .++|++  ++++||+|++|......-         ... .....+++.|.+|.++ .+  .+|++++..+..+...... 
T Consensus       201 ~~~a~~--~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~-~~G~RiG~~~~~~~~~~~~~~~~-  276 (401)
T d7aata_         201 ASVVKK--RNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMG-LYGERAGAFTVICRDAEEAKRVE-  276 (401)
T ss_dssp             HHHHHH--TTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC-CGGGCEEEEEEECSSHHHHHHHH-
T ss_pred             HHHHhc--ceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccce-eeccccceeecchHHHHHHHHHH-
Confidence            999999  999999999987543210         011 1122456667777763 44  4699998876654433210 


Q ss_pred             CccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHH--HHH---HhcHHHHHHHHHHHHHHHHHHHHHcCC----cccc
Q 015729          228 VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALD--LIF---EEGLENVIERHRRLGKATRLAVEAWGL----KNCT  298 (401)
Q Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~--~~~---~~g~~~~~~~~~~~~~~l~~~L~~~g~----~~~~  298 (401)
                           ............     .++......+...+.  .+.   ...++..++++.++++.+.+.|++.+.    ....
T Consensus       277 -----~~~~~~~~~~~~-----~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~  346 (401)
T d7aata_         277 -----SQLKILIRPMYS-----NPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHIT  346 (401)
T ss_dssp             -----HHHHHHHHHHHS-----SCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHH
T ss_pred             -----HHHHHHhhcccc-----ccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceEC
Confidence                 000000111111     133332222222222  111   112456777788888999999998743    2233


Q ss_pred             CCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      +    ..++++|+.+    + ++++++|++++||.+.+|        .||++.+ +++++|+.+.++|.++++
T Consensus       347 ~----~~G~F~~~~l----s-~e~~~~L~~e~gV~~~pg--------~Ris~a~-~~~~~i~~la~ai~~v~k  401 (401)
T d7aata_         347 D----QIGMFCFTGL----K-PEQVERLTKEFSIYMTKD--------GRISVAG-VASSNVGYLAHAIHQVTK  401 (401)
T ss_dssp             H----CCSSEEECCC----C-HHHHHHHHHHHCEECCTT--------CEEEGGG-CCTTTHHHHHHHHHHHHC
T ss_pred             C----CCeEEEecCC----C-HHHHHHHHHhCCEEECCC--------cEEEecc-CCHHHHHHHHHHHHHHhC
Confidence            3    3445665543    3 456777877779998766        3997654 788999999999998763

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.92  E-value=3.2e-24  Score=199.19  Aligned_cols=313  Identities=15%  Similarity=0.057  Sum_probs=197.8

Q ss_pred             CCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEE--cCC
Q 015729           16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISF--LIG   93 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~--~~~   93 (401)
                      +..++++...+++..+.      .......++++..++.++.++.+.+++++|+++|+..++.++. +++.|++.  .++
T Consensus        30 ~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~-~~~~vi~~~~~~~  102 (366)
T d2aeua1          30 GGFLIDEKDKALLNTYI------GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK-PKKVIHYLPELPG  102 (366)
T ss_dssp             CCCCCCHHHHHHHTSTT------HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHC-CSEEEEECSSSSC
T ss_pred             CCCCccHHHHHHHHHhc------CchhhHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhC-CCCEEEEecCCCc
Confidence            34566677777775532      2234456788888999998887889999999999999988854 55665553  356


Q ss_pred             cchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcc-cccchHHHHHHhhhcCCCcEE
Q 015729           94 QFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATG-VTNNLSKVRKLLDEYRHPALF  172 (401)
Q Consensus        94 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG-~~~~l~~i~~l~~~~~~~~~l  172 (401)
                      |.++.  ..++..|++++..  +     |++++++++++    ++++|++++++||++ ...++++|+++|++  +|+++
T Consensus       103 ~~~~~--~~~~l~g~~~v~~--~-----d~e~l~~~i~~----~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~--~~~~~  167 (366)
T d2aeua1         103 HPSIE--RSCKIVNAKYFES--D-----KVGEILNKIDK----DTLVIITGSTMDLKVIELENFKKVINTAKN--KEAIV  167 (366)
T ss_dssp             CTHHH--HHHHHTTCEEEEE--S-----CHHHHHTTCCT----TEEEEEECBCTTSCBCCHHHHHHHHHHHHH--HTCCE
T ss_pred             chhHH--HHHHhcCCeEECC--C-----CHHHHHHhcCC----CceEEEEEecCCCCcCCHHHHHHHHHHhcc--CcEEE
Confidence            66654  5577788876433  3     79999988874    679999999988644 56789999999999  99999


Q ss_pred             EEecccccCccee----ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCC
Q 015729          173 LVDGVSSICAIDF----RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP  248 (401)
Q Consensus       173 i~D~a~~~~~~~~----~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  248 (401)
                      ++|++|+.+....    .....++|++++|.+|+++| .+.|++++++++++++....            .      .+.
T Consensus       168 i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~g-~~~G~i~~~~~~i~~~~~~~------------~------~~g  228 (366)
T d2aeua1         168 FVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG-PRGGLLAGKKELVDKIYIEG------------T------KFG  228 (366)
T ss_dssp             EEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS-CSCEEEEEEHHHHHHHHHHH------------H------TTT
T ss_pred             EEecCccccccccccCCCHhhcCceEEEecccccccc-cceeEEEecHHHHHHHHHHH------------h------ccc
Confidence            9999987553221    12245799999999999864 45799999999988775421            0      112


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--C---CccccCCCccCCceeEEEEcCCC-----CC
Q 015729          249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--G---LKNCTQKEEWFSDTVTAVIVPSH-----IN  318 (401)
Q Consensus       249 ~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g---~~~~~~~~~~~~~~~~~~~~~~~-----~~  318 (401)
                      .+.++..++++..+++.+.-..+++..++.++....+.+.+...  .   ........  .....++...+..     .+
T Consensus       229 ~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  306 (366)
T d2aeua1         229 LEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYER--TPTGFVIKRVYKDDTINIKK  306 (366)
T ss_dssp             CBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEE--CSSEEEEEEEESSHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhccccccccccCccccc--CccchhccCCCcceeecccC
Confidence            23455445555555553211112222333333223333333332  1   11111110  1112232332211     12


Q ss_pred             HHHHHHHHHhhCCeEEccCCC-CCCCcEEEEeecccCCHH-HHHHHHHHHHHHHH
Q 015729          319 SSEIVRRAWQRYNLSLGLGLN-KVAGKVFRIGHLGHLNEL-QLLGCLAGVEMILK  371 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~-~~~~~~~Ri~~~~~~~~~-di~~~~~~i~~~l~  371 (401)
                      ..+++..|.+++||.+.|+.. +...+++||++....+++ +.|.++++|.+.++
T Consensus       307 ~~~~a~~Ll~~~gV~~ip~~~~p~~~~~lRis~~~~~~~~i~~d~l~~ai~~~lK  361 (366)
T d2aeua1         307 LIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIK  361 (366)
T ss_dssp             HHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCEEEEECCCCCCCCCEEEEeccccchhhCCHHHHHHHHHHHHH
Confidence            456888888888999888743 334567999876543333 45677777766665

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.1e-23  Score=201.07  Aligned_cols=302  Identities=12%  Similarity=0.083  Sum_probs=211.3

Q ss_pred             HHHHHHHHHHHHhcCCCCceEEecCChhHHHHH-HHhc---cCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC---
Q 015729           43 LTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWES-ALTN---TLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES---  115 (401)
Q Consensus        43 ~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~-~~~~---~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~---  115 (401)
                      +..++.+++++++|.+......+++++|++... ++.+   ...+++.|+++...|++..  ..+...|++++.|+.   
T Consensus        95 le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~--~a~~~~g~~~~~v~~~~~  172 (445)
T d3bc8a1          95 ITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF--KSMVTAGFEPVVIENVLE  172 (445)
T ss_dssp             HHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH--HHHHHTTCEEEEECCEEE
T ss_pred             HHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHH--HHHHHcCCeeEEEEeecc
Confidence            455677888999999866557788888865443 3332   3456789999998888764  567889999888864   


Q ss_pred             CCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCccee------ccCc
Q 015729          116 DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDF------RMDE  189 (401)
Q Consensus       116 ~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~------~~~~  189 (401)
                      +..+.+|+++|++++++...+++.+|+++++++++|.+.|+++|.++|++  +|+++|+|+|++.+....      +..-
T Consensus       173 ~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~--~~~~l~vD~a~~~~~~~~~~~~~~~~~~  250 (445)
T d3bc8a1         173 GDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICAN--YDIPHVVNNAYGLQSSKCMHLIQQGARV  250 (445)
T ss_dssp             TTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHH--HTCCEEEECTTTTTCHHHHHHHHHHHHH
T ss_pred             CcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHH--hCCcEEEEccchhhhhhccccchhccCc
Confidence            45568999999999987554568899999999999999999999999999  999999999998765321      2223


Q ss_pred             ccceEEEecCCCcccCCCcceEEEecHHH-HHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHH
Q 015729          190 WGIDVALTGSQKALSLPTGMGIVCASPKA-LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFE  268 (401)
Q Consensus       190 ~~~di~~~s~~K~l~g~~g~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~  268 (401)
                      .++|++++|+||++++|.|.|+++.++.. .+.+...                ..+.     .+......+.+++..+..
T Consensus       251 ~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~----------------~~~~-----~~~~~~~~~~~~~~~~g~  309 (445)
T d3bc8a1         251 GRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKM----------------YPGR-----ASASPSLDVLITLLSLGC  309 (445)
T ss_dssp             SCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHH----------------SCSC-----BCSHHHHHHHHHHHHHHH
T ss_pred             CCcceEEecCccccccCCCCceeeeCChHHHHHHHHH----------------Hhhc-----ccCcchHHHHHHHHHHhh
Confidence            36899999999999889888888877543 3333211                0111     112223455666776767


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCCceeEEEEcC-----CCCCHHHHHHHHHhhCCeEEcc---
Q 015729          269 EGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFSDTVTAVIVP-----SHINSSEIVRRAWQRYNLSLGL---  336 (401)
Q Consensus       269 ~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~L~~~~~i~v~~---  336 (401)
                      .++....++..++.+++.+.|.++    |..+......  . ...++.+.     .+.+..++...|.+. +|....   
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~--~-~~~~~~l~~~~~~~~~~~~~l~~~L~~~-gI~~~~~~~  385 (445)
T d3bc8a1         310 SGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHN--P-ISLAMTLKTIDGHHDKAVTQLGSMLFTR-QVSGARAVP  385 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTC--S-SEEEEECTTTSSSSSCHHHHHHHHHHHT-TCCSCEEEC
T ss_pred             hcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCC--C-cceEEEeeeccccCCCCHHHHHHHHHHc-CCCcceeec
Confidence            777788888888888888888764    5555432221  1 22333331     123445677777654 653111   


Q ss_pred             -C------------CC----CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          337 -G------------LN----KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       337 -g------------~~----~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                       +            +.    .....++|+++...+|++|||.++++|+++++++
T Consensus       386 ~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~  439 (445)
T d3bc8a1         386 LGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIV  439 (445)
T ss_dssp             SCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHH
Confidence             1            00    1123458998888899999999999999999875

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.7e-22  Score=183.94  Aligned_cols=333  Identities=15%  Similarity=0.138  Sum_probs=238.8

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCC-----------CccHHH-HHHHHHHHHHHHhcCCCCceEEecCChhHHHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYR-----------SPAVPA-LTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESA   76 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~-----------~~~~~~-~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~   76 (401)
                      ++..+++.=-.+++.|++++.....+.+           +..+.+ +..-+.++..++||.+..  -+-+.||+.|+.++
T Consensus        27 ~~i~LiaSEN~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~a--nVqp~SGs~AN~av  104 (416)
T d1dfoa_          27 EHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYA--NVQPHSGSQANFAV  104 (416)
T ss_dssp             HSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE--ECCCSSHHHHHHHH
T ss_pred             cCceEecCcccCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcc--eeecccCccHHHHH
Confidence            4567788888899999999998553321           122233 333456777889998753  24467899999999


Q ss_pred             HhccCCCCCeEEEEcCC---cchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc
Q 015729           77 LTNTLSPGDRIISFLIG---QFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT  153 (401)
Q Consensus        77 ~~~~~~~gd~vl~~~~~---~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~  153 (401)
                      +.++++|||+|+..+..   |.++....-......+.+..+++.++.+|.+++++.+.+   .+||+|++....  ....
T Consensus       105 ~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~---~kPklIi~G~S~--y~r~  179 (416)
T d1dfoa_         105 YTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKE---HKPKMIIGGFSA--YSGV  179 (416)
T ss_dssp             HHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHH---HCCSEEEEECSS--CCSC
T ss_pred             HHHhcCCCCeeeeccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHH---hccceEEecccc--cccc
Confidence            99999999999999874   333321111222334667777777778999999999887   578999888543  4477


Q ss_pred             cchHHHHHHhhhcCCCcEEEEecccccCcc-----eeccCcccceEEEecCCCcccCCCcceEEEec---HHHHHHhccC
Q 015729          154 NNLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGIDVALTGSQKALSLPTGMGIVCAS---PKALEASKTA  225 (401)
Q Consensus       154 ~~l~~i~~l~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~---~~~~~~~~~~  225 (401)
                      .|.+++.++|++  .|.++++|.+|..|..     +-.+.  .+|++++|.||+|.||.| |++.++   ++..+++...
T Consensus       180 ~d~~~~reiad~--vga~l~~D~aH~~GLIa~g~~~sP~~--~aDvvt~tThKtlrGPrg-giI~~~~~~~~~~~~i~~a  254 (416)
T d1dfoa_         180 VDWAKMREIADS--IGAYLFVDMAHVAGLVAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GLILAKGGSEELYKKLNSA  254 (416)
T ss_dssp             CCHHHHHHHHHH--TTCEEEEECTTTHHHHHHTSSCCCTT--TSSEEEEESSSTTCCCSC-EEEEESSCCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHh--cCceEEcchhhhhcceeccccCCccc--ccceeeeehhhcccCCCc-eEEEeccchHhHHHHHHhh
Confidence            899999999999  9999999999976532     22333  369999999999998886 888886   3544444321


Q ss_pred             CCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCC
Q 015729          226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS  305 (401)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  305 (401)
                      .              | .|  .-+++....+++...++.......++...++..+|++.|.+.|.+.|+++....   ..
T Consensus       255 v--------------f-Pg--~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~iv~gg---Td  314 (416)
T d1dfoa_         255 V--------------F-PG--GQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGG---TD  314 (416)
T ss_dssp             H--------------T-TT--TCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CS
T ss_pred             h--------------C-cc--cccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCC---CC
Confidence            1              1 11  123466777788777877755555788999999999999999999999998632   23


Q ss_pred             ceeEEEEc-CCCCCHHHHHHHHHhhCCeEEccCCC------CCCCcEEEEeeccc----CCHHHHHHHHHHHHHHHHhcC
Q 015729          306 DTVTAVIV-PSHINSSEIVRRAWQRYNLSLGLGLN------KVAGKVFRIGHLGH----LNELQLLGCLAGVEMILKDVG  374 (401)
Q Consensus       306 ~~~~~~~~-~~~~~~~~l~~~L~~~~~i~v~~g~~------~~~~~~~Ri~~~~~----~~~~di~~~~~~i~~~l~~~~  374 (401)
                      ++++.+.+ +.+++..++.+.|. +.||.+....-      +.....+||++..-    ..++|++++.+.|.++++...
T Consensus       315 nHlvlvdl~~~~~~G~~a~~~Le-~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~~~  393 (416)
T d1dfoa_         315 NHLFLVDLVDKNLTGKEADAALG-RANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDSIN  393 (416)
T ss_dssp             SSEEEEECGGGTCCHHHHHHHHH-HTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred             CceeEEEecccCCCHHHHHHHHH-HcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHcCC
Confidence            34566666 34667778777775 55998764321      22235699998652    358999999999999997543

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.91  E-value=6.2e-23  Score=193.75  Aligned_cols=324  Identities=12%  Similarity=-0.001  Sum_probs=202.0

Q ss_pred             CCcCChHHHHHHHccC---cCCCCCccHHHHHHHHHHHHHHHhcCC------C-CceEEecCChhHHHHHH-------Hh
Q 015729           16 GPVHIPDQVIRAMNRN---NEDYRSPAVPALTKTLLEDIKKIFKTT------S-GTPFLIPTTGTGAWESA-------LT   78 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~---~~~~~~~~~~~~~~~l~~~la~~~g~~------~-~~~i~~~~g~t~a~~~~-------~~   78 (401)
                      |+.++.+.|.++....   .....+|.+.....++|+.+++++...      . ...++.+.+++.++..+       +.
T Consensus        45 g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  124 (412)
T d1ajsa_          45 CQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYN  124 (412)
T ss_dssp             SCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhh
Confidence            4566778888775442   122224555667778999998887432      1 12244455655554433       34


Q ss_pred             ccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC---CCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc
Q 015729           79 NTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES---DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN  155 (401)
Q Consensus        79 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~  155 (401)
                      ++++|||+|++++|+|+.+.  ..++..|++.+.++.   +.....|.+.+++.+...+ +++++++++.||||||.+++
T Consensus       125 ~~~~pGd~Vlv~~P~y~~y~--~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~il~~~P~NPTG~v~s  201 (412)
T d1ajsa_         125 GTNNKDTPVYVSSPTWENHN--GVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAP-EFSIFVLHACAHNPTGTDPT  201 (412)
T ss_dssp             SSSCCCSCEEEEESCCTHHH--HHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSC-TTCEEEEESSSCTTTCCCCC
T ss_pred             hcCCCCCEEEEeCCcchhhH--HHHHHcCCeEEEeecccccccccccHHHHHHHHHhcc-CCcEEEEecCCCCCcCCCCC
Confidence            45799999999999877654  567778987665543   2233568888877766544 56789999999999999997


Q ss_pred             ---hHHHHHHhhhcCCCcEEEEecccccCccee----------ccCcccceEEEecCCCcccC-CCcceEEEecHHHHHH
Q 015729          156 ---LSKVRKLLDEYRHPALFLVDGVSSICAIDF----------RMDEWGIDVALTGSQKALSL-PTGMGIVCASPKALEA  221 (401)
Q Consensus       156 ---l~~i~~l~~~~~~~~~li~D~a~~~~~~~~----------~~~~~~~di~~~s~~K~l~g-~~g~G~l~~~~~~~~~  221 (401)
                         +++|+++|++  +|++||+|++|......-          ........+++.|.+|.++. +.++|++++.....+.
T Consensus       202 ~e~~~~i~~la~~--~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~  279 (412)
T d1ajsa_         202 PEQWKQIASVMKR--RFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDS  279 (412)
T ss_dssp             HHHHHHHHHHHHH--HTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHH
T ss_pred             HHHHHHHHHHHhh--CCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCccccccchhHHHH
Confidence               6779999999  999999999987543210          01112345667777777742 2346998887655433


Q ss_pred             hccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHH--HH---HhcHHHHHHHHHHHHHHHHHHHHHcCCc-
Q 015729          222 SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL--IF---EEGLENVIERHRRLGKATRLAVEAWGLK-  295 (401)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~--~~---~~g~~~~~~~~~~~~~~l~~~L~~~g~~-  295 (401)
                      ....         .........+ .+.. ++.....++...+..  ..   ...++..++++.++++.+.+.|++++.. 
T Consensus       280 ~~~~---------~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~  348 (412)
T d1ajsa_         280 ILRV---------LSQMQKIVRV-TWSN-PPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPG  348 (412)
T ss_dssp             HHHH---------HHHHHHHHHT-TTSS-CCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHH---------HHHHHHHhhc-cccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            3211         0000111111 1122 333222222222221  11   1125667888888899999999987533 


Q ss_pred             ---cccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          296 ---NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       296 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                         ...+    ..+.+.++.+    +. +.+.+|++++||.+.+|.        ||++.+ .+++++++++++|++++++
T Consensus       349 ~~~~i~~----~~G~F~~~~l----s~-~~v~~L~~e~gV~~vpg~--------Ri~~ag-~~~~~i~~~a~aI~~av~~  410 (412)
T d1ajsa_         349 TWNHITD----QIGMFSFTGL----NP-KQVEYLINQKHIYLLPSG--------RINMCG-LTTKNLDYVATSIHEAVTK  410 (412)
T ss_dssp             CCHHHHH----CCSSEEECCC----CH-HHHHHHHHTTCEECCTTS--------EEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred             CeeeecC----CCeEEEecCC----CH-HHHHHHHHhCCEEEeCCC--------eEEecc-CCHHHHHHHHHHHHHHHHh
Confidence               2222    2344444322    43 455667777899887652        997665 7889999999999999987


Q ss_pred             c
Q 015729          373 V  373 (401)
Q Consensus       373 ~  373 (401)
                      +
T Consensus       411 ~  411 (412)
T d1ajsa_         411 I  411 (412)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.91  E-value=8e-23  Score=194.35  Aligned_cols=292  Identities=12%  Similarity=0.119  Sum_probs=208.4

Q ss_pred             HHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc--CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeC---CCC
Q 015729           44 TKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT--LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVES---DWG  118 (401)
Q Consensus        44 ~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~  118 (401)
                      ..++...+.+.+|.+... .....|++.++.+++.+.  ..++++|+++...|++..  +.+...|++++.|+.   +..
T Consensus       115 ~~~~~~~~~~~~g~~~~~-~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~--k~~~~~g~~~~~v~~~~~~~~  191 (434)
T d2z67a1         115 TNKILESFFKQLGLNVHA-IATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPI--KAVSFVGMNMRLVETVLDGDR  191 (434)
T ss_dssp             HHHHHHHHHHHTTCCCEE-EEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH--HHHHHTTCEEEEECCEEETTE
T ss_pred             HHHHHHHHHHhcCCCcce-eecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHH--HHHHHhCCcceEEEeecCCCc
Confidence            345556678888887632 444555556666655443  347889999999888764  556778998888874   334


Q ss_pred             CCCChHHHHHHHhccCC-CCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcc-----eeccCcccc
Q 015729          119 EGAKLDVLASKLAADTA-HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAI-----DFRMDEWGI  192 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~-~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~  192 (401)
                      +.+|+++|++++++++. ..+.+++++++++++|.+.|+++|.++|++  +|+++|+|+||+.+..     +......++
T Consensus       192 ~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~--~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~  269 (434)
T d2z67a1         192 VYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICEN--YDIPHIINGAYAIQNNYYLEKLKKAFKYRV  269 (434)
T ss_dssp             EECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHH--HTCCEEEECTTTTTCHHHHHHHHHHHTSCC
T ss_pred             cCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHH--hCCeEEEeccchhhhhhccccccccccCCc
Confidence            57899999999986321 256778888999999999999999999999  9999999999986542     122345689


Q ss_pred             eEEEecCCCcccCCCcceEEEecHH-HHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcH
Q 015729          193 DVALTGSQKALSLPTGMGIVCASPK-ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGL  271 (401)
Q Consensus       193 di~~~s~~K~l~g~~g~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~  271 (401)
                      |++++|+||+++++.|.|+++.+++ ..+++....                     .++.+......+.+++..+...|+
T Consensus       270 D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~a~l~~~~~~g~  328 (434)
T d2z67a1         270 DAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSY---------------------PGRASATPVVNTLVSLLSMGSKNY  328 (434)
T ss_dssp             SEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTS---------------------CSCBCSHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEcCccccccCCCccccccCcHHHHHHHHhhc---------------------ccccccchHHHHHHHHHHHHHhcc
Confidence            9999999999988999888887654 444443321                     111223344566777777777788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCC--------
Q 015729          272 ENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLN--------  339 (401)
Q Consensus       272 ~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~--------  339 (401)
                      +...++..++++++++.|+++    |..+....    ....+.+.+  ..+..++...|.++ ||.......        
T Consensus       329 ~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~~----~~~~~~~~~--~~~~~~l~~~L~~~-gI~g~~v~~~l~~~g~~  401 (434)
T d2z67a1         329 LELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE----SPIASCISV--NSDPVEIAAKLYNL-RVTGPRGIKKTDHFGNC  401 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC----CSSEEEEEC--SSCHHHHHHHHHHT-TEESCEEECTTCHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhcCceecCCC----CCceeeeec--CCCHHHHHHHHHHc-CCeeeehhhhccccCee
Confidence            889999999999999988874    55555432    122333443  34678898888876 875321111        


Q ss_pred             ---CCCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          340 ---KVAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       340 ---~~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                         .....++|+++...+|+||||+++++|++
T Consensus       402 ~~~~~~~~~l~~~~s~~~T~edID~~i~~L~k  433 (434)
T d2z67a1         402 YLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEK  433 (434)
T ss_dssp             CSSCCSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred             eecccCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence               11246799988888999999999999975

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.91  E-value=9.4e-23  Score=195.39  Aligned_cols=314  Identities=7%  Similarity=-0.077  Sum_probs=203.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCCh-hHHHHHHHhccCCCCCeEEEEcCCcchHHH-HHHHHHcCCcEEEEeCCCCC
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTG-TGAWESALTNTLSPGDRIISFLIGQFSLLW-IDQQQRLNFNVDVVESDWGE  119 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~-t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~  119 (401)
                      ..+.++++.+|+++|.+.   .+|++|| |.++.+++.++++|||+|++...+|.|..- .......+..+..++.++.+
T Consensus        66 ~~i~eae~~~A~~~ga~~---a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~~g  142 (462)
T d1c4ka2          66 GPAVAAEKHAARVYNADK---TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYG  142 (462)
T ss_dssp             THHHHHHHHHHHHTTCSE---EEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHHHhCCCe---EEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHHhcCCceeeeccccccc
Confidence            467899999999999865   5565555 556666678899999999999999988752 11222223334444444433


Q ss_pred             --------CCChHHHHHHHhcc-----CCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceec
Q 015729          120 --------GAKLDVLASKLAAD-----TAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR  186 (401)
Q Consensus       120 --------~~d~~~le~~~~~~-----~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~  186 (401)
                              .++.+.++..+.+.     ...+++.+++.+.+|..|.+.|+++|.++|++  +|+++++|+||+.+....+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~--~g~~l~vD~A~~~~~~~~~  220 (462)
T d1c4ka2         143 FIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGH--LCDYIEFDSAWVGYEQFIP  220 (462)
T ss_dssp             CEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGG--GBSEEEEECTTCCGGGSSG
T ss_pred             ccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHH--cCCEEEEechhhccccccC
Confidence                    12333333322210     01345677777888999999999999999999  9999999999987654322


Q ss_pred             c-------------CcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcH
Q 015729          187 M-------------DEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSI  253 (401)
Q Consensus       187 ~-------------~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  253 (401)
                      .             ...++|++++|.||+++++.|.+++..++.........   ............+..+     +++.
T Consensus       221 ~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~---~~~~~~~~~~~~~~t~-----sp~~  292 (462)
T d1c4ka2         221 MMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRY---CDHKHFNNSFNLFMST-----SPFY  292 (462)
T ss_dssp             GGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTC---CCHHHHHHHHHHHSCS-----SCCH
T ss_pred             cCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchh---hhHHHHHHhhhhcccC-----CchH
Confidence            1             12356999999999997666656666666543322111   0011111222233333     4888


Q ss_pred             HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCC-------------------------------
Q 015729          254 QLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKE-------------------------------  301 (401)
Q Consensus       254 ~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-------------------------------  301 (401)
                      ..++++.++.......+.++..++..++.+++++.+.++ +........                               
T Consensus       293 ~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (462)
T d1c4ka2         293 PMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWH  372 (462)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTT
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCCcchhc
Confidence            888888888888766556778888999999999999886 321110000                               


Q ss_pred             ---ccC------CceeEEEEcC-----------CCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHH
Q 015729          302 ---EWF------SDTVTAVIVP-----------SHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLG  361 (401)
Q Consensus       302 ---~~~------~~~~~~~~~~-----------~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~  361 (401)
                         ...      .+.-+.+..+           .+++..++.+.|.+ +||.+...    ....+|+++...+|++|+|+
T Consensus       373 ~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~-~gI~~e~~----~~~~i~~~~s~~~T~edid~  447 (462)
T d1c4ka2         373 AYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRD-HGIIPEKS----DLNSILFLMTPAETPAKMNN  447 (462)
T ss_dssp             CCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHH-TTCCCSEE----CSSEEEEECCTTCCHHHHHH
T ss_pred             cccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHH-cCCeeecc----CCCeEEEEecCCCCHHHHHH
Confidence               000      0111223221           14567788898875 58864311    24579999888999999999


Q ss_pred             HHHHHHHHHHhc
Q 015729          362 CLAGVEMILKDV  373 (401)
Q Consensus       362 ~~~~i~~~l~~~  373 (401)
                      ++++|+++.+.+
T Consensus       448 li~aL~ei~r~~  459 (462)
T d1c4ka2         448 LITQLLQLQRLI  459 (462)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987653

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=2.1e-22  Score=184.52  Aligned_cols=320  Identities=11%  Similarity=0.063  Sum_probs=205.3

Q ss_pred             cCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchH
Q 015729           18 VHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSL   97 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~   97 (401)
                      +.++|+|++|+.+.......+...+...+|++.+++++|.+.   +++++|||+|+..++.++.++||.+++..+.+++.
T Consensus        10 t~p~p~v~~A~~~a~~g~~~yg~~p~~~~le~~lA~~~G~~~---~~~~~sGt~A~~~al~a~~~~g~~~~~~~~~~~~~   86 (343)
T d1m6sa_          10 TKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEA---ALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFW   86 (343)
T ss_dssp             CCCCHHHHHHHHTCCCCCGGGTCCHHHHHHHHHHHHHTTCSE---EEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHH
T ss_pred             CCCCHHHHHHHHhhhcCCcccCCCHHHHHHHHHHHHHHCCCe---EEEeCCHHHHHHHHHHHHhccCCceecccccccee
Confidence            344678999998754333223445678899999999999864   78889999999999999999999999999877665


Q ss_pred             H-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCC--CceEEEEE-ecCCCcccccc---hHHHHHHhhhcCCCc
Q 015729           98 L-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAH--TIKAICIV-HNETATGVTNN---LSKVRKLLDEYRHPA  170 (401)
Q Consensus        98 ~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~--~~~~i~~~-~~~n~tG~~~~---l~~i~~l~~~~~~~~  170 (401)
                      . ........+..+..++.+. +..|++.+++.+...+..  ++..++++ .++++.|.+.|   +++|.++|++  +|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~--~g~  163 (343)
T d1m6sa_          87 YEVGAMAVLSGVMPHPVPGKN-GAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKE--HGI  163 (343)
T ss_dssp             SSTTHHHHHTCCEEEEECEET-TEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH--HTC
T ss_pred             eecccccccccceeecccccc-CccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHh--cCe
Confidence            4 2234444555666665443 346899999988764422  33444444 44566677665   5567777788  999


Q ss_pred             EEEEecccccCcceecc-----CcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCC
Q 015729          171 LFLVDGVSSICAIDFRM-----DEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGT  245 (401)
Q Consensus       171 ~li~D~a~~~~~~~~~~-----~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  245 (401)
                      ++++|+++..+......     .....+..+++.+|..++.. .|++...++........             .....+ 
T Consensus       164 ~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~-------------~~~~~~-  228 (343)
T d1m6sa_         164 NVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPV-GSVVVGDRDFIERARKA-------------RKMLGG-  228 (343)
T ss_dssp             EEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSS-CEEEEECHHHHHHHHHH-------------HHHHTC-
T ss_pred             EEEeccccccccccccccchhhhccccccccccccccccccc-cccccccHHHHhhhHhh-------------Cccccc-
Confidence            99999998754322111     11124556666666665444 47777777765544321             111111 


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCC-CCCHHHHHH
Q 015729          246 FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPS-HINSSEIVR  324 (401)
Q Consensus       246 ~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~  324 (401)
                        ..+.+. .++++  ....... . ....++..++...+.+.+.+++...... +. .. .++++.+++ +.++.++++
T Consensus       229 --~~~~~~-~~~a~--~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~-~~v~~~~~~~~~~a~~l~~  298 (343)
T d1m6sa_         229 --GMRQAG-VLAAA--GIIALTK-M-VDRLKEDHENARFLALKLKEIGYSVNPE-DV-KT-NMVILRTDNLKVNAHGFIE  298 (343)
T ss_dssp             --CCSSTH-HHHHH--HHHHHHH-S-STTHHHHHHHHHHHHHHHHHHTCBCCGG-GC-CS-SEEEEECTTSSSCHHHHHH
T ss_pred             --ccchhH-HHHHh--hhhhhhh-h-HHHHHHHHHHHHHhhhHHHHhccCccCC-CC-Cc-eEEEEEeCCCcccHHHHHH
Confidence              111211 11111  1111111 1 2234445566667777777763332221 11 22 366677753 467889999


Q ss_pred             HHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          325 RAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       325 ~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .|.++ ||.+.+..    ..++||++...+|+||||+++++|+++++++
T Consensus       299 ~L~~~-Gi~v~~~~----~~~iRi~~~~~~t~edid~~v~~l~~v~~~~  342 (343)
T d1m6sa_         299 ALRNS-GVLANAVS----DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF  342 (343)
T ss_dssp             HHHHH-TEECEEEE----TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHC-CCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            99887 99987652    4589998888899999999999999999875

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.90  E-value=4.2e-22  Score=187.82  Aligned_cols=328  Identities=11%  Similarity=0.010  Sum_probs=204.7

Q ss_pred             CCcCChHHHHHHHccC---cCCCCCccHHHHHHHHHHHHHHHhcCCC-----CceEEe--cCChhHHHHHHH--hccCCC
Q 015729           16 GPVHIPDQVIRAMNRN---NEDYRSPAVPALTKTLLEDIKKIFKTTS-----GTPFLI--PTTGTGAWESAL--TNTLSP   83 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~---~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~~i~~--~~g~t~a~~~~~--~~~~~~   83 (401)
                      |..++.+.|.++....   ......|.......++|+.+++++....     ++.++.  +.++..++..+.  .....+
T Consensus        44 g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (412)
T d1yaaa_          44 GKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFP  123 (412)
T ss_dssp             SCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCT
T ss_pred             CCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCC
Confidence            3456667888765432   1222245555667788888888765431     121222  233444433332  345789


Q ss_pred             CCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHH
Q 015729           84 GDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSK  158 (401)
Q Consensus        84 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~  158 (401)
                      ||.|++++|+|+.+.  ..++..|++++.++...+  ...+.+.+++.+...+ ++++++++++||||||.+++   +++
T Consensus       124 gd~Vlip~P~~~~y~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~~P~NPTG~~~s~~~~~~  200 (412)
T d1yaaa_         124 DKLVYLSKPTWANHM--AIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAP-EGSIFVLHSCAHNPTGLDPTSEQWVQ  200 (412)
T ss_dssp             TCCEEEEESCCTTHH--HHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSC-TTCEEEEECSSCTTTCCCCCHHHHHH
T ss_pred             CCEEecccccCchhH--HHHHHcCCceecccccccccccccchhhhcccccCC-CceEEEEecCCCCCccccCCHHHHHH
Confidence            999999999877664  567888999999997443  3567888888887655 56778899999999999996   677


Q ss_pred             HHHHhhhcCCCcEEEEecccccCccee-------------ccCcccceEEEecCCCccc-CCCcceEEEecHHHHHHhcc
Q 015729          159 VRKLLDEYRHPALFLVDGVSSICAIDF-------------RMDEWGIDVALTGSQKALS-LPTGMGIVCASPKALEASKT  224 (401)
Q Consensus       159 i~~l~~~~~~~~~li~D~a~~~~~~~~-------------~~~~~~~di~~~s~~K~l~-g~~g~G~l~~~~~~~~~~~~  224 (401)
                      |.++|++  +++++|+|++|......-             ........+++.|.+|.++ .+.++|++++.++.......
T Consensus       201 i~~~a~~--~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~  278 (412)
T d1yaaa_         201 IVDAIAS--KNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKT  278 (412)
T ss_dssp             HHHHHHH--TTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHH
T ss_pred             HHhhhcc--CCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHH
Confidence            8899999  999999999987443210             0122234588889999884 23347999988654322211


Q ss_pred             CCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHH--HH---HhcHHHHHHHHHHHHHHHHHHHHHcCCc----
Q 015729          225 AKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL--IF---EEGLENVIERHRRLGKATRLAVEAWGLK----  295 (401)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~--~~---~~g~~~~~~~~~~~~~~l~~~L~~~g~~----  295 (401)
                      ..     ..+.......... . ..+++......+..++..  ..   ...++..+++++++++.+.+.|++.|..    
T Consensus       279 ~~-----~~~~~~~~~~~~~-~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~  351 (412)
T d1yaaa_         279 IK-----PAVTSQLAKIIRS-E-VSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWD  351 (412)
T ss_dssp             HH-----HHHHHHHHHHHHT-T-TSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCT
T ss_pred             HH-----HHHHHHHHHHHHH-H-hcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence            00     0000000111111 1 223444333333333321  11   1225667788888889999999887533    


Q ss_pred             cccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          296 NCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ...+    ..+.+.++.+    + .+++++|.+++||.+.+|.        ||++++ ++++.++.+.++|.++++.+
T Consensus       352 ~~~~----~gG~F~~~~l----s-~e~~~~L~~e~~V~~~~g~--------Ris~~g-~~~~~i~~l~~ai~~v~k~~  411 (412)
T d1yaaa_         352 HIVN----QCGMFSFTGL----T-PQMVKRLEETHAVYLVASG--------RASIAG-LNQGNVEYVAKAIDEVVRFY  411 (412)
T ss_dssp             HHHH----CCSSEEECCC----C-HHHHHHHHHHHCEECCTTS--------EEEGGG-CCTTTHHHHHHHHHHHHHHC
T ss_pred             eeCC----CceEEEecCc----C-HHHHHHHHHhCCEEECCCC--------EEEecc-CCHHHHHHHHHHHHHHHHhh
Confidence            2232    2344554433    3 4567888878899876542        897665 78889999999999988753

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.90  E-value=7.1e-22  Score=181.83  Aligned_cols=346  Identities=13%  Similarity=0.084  Sum_probs=227.0

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCCCc--------c----HHHHHHHHHHHHHHHhcCCCCceE--EecCChhHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYRSP--------A----VPALTKTLLEDIKKIFKTTSGTPF--LIPTTGTGAWE   74 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~~--------~----~~~~~~~l~~~la~~~g~~~~~~i--~~~~g~t~a~~   74 (401)
                      +...++|+=-.+++.|++++.....+.++.        .    ..++..-+.++..++|+.+..++-  +-..||+.|+.
T Consensus        28 ~~l~LiaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~  107 (463)
T d2a7va1          28 RGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANL  107 (463)
T ss_dssp             HSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHH
T ss_pred             cCeeEeccCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHH
Confidence            346677888889999999999855432211        1    223333467888999999876432  44678999999


Q ss_pred             HHHhccCCCCCeEEEEcC---CcchHHHH---HHHHHcCC--cEEEEeCCC-CCCCChHHHHHHHhccCCCCceEEEEEe
Q 015729           75 SALTNTLSPGDRIISFLI---GQFSLLWI---DQQQRLNF--NVDVVESDW-GEGAKLDVLASKLAADTAHTIKAICIVH  145 (401)
Q Consensus        75 ~~~~~~~~~gd~vl~~~~---~~~~~~~~---~~~~~~g~--~~~~v~~~~-~~~~d~~~le~~~~~~~~~~~~~i~~~~  145 (401)
                      ++..++++|||+|+..+.   ||.++...   ......|.  +.....+++ ++.+|.+++++.+++   .+|++|++..
T Consensus       108 av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~---~kPklIi~G~  184 (463)
T d2a7va1         108 AVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARL---FRPRLIIAGT  184 (463)
T ss_dssp             HHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHH---HCCSEEEECC
T ss_pred             HHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhh---cCCceEEecc
Confidence            999999999999998876   34433311   11111222  333333453 457999999999987   5789998886


Q ss_pred             cCCCcccccchHHHHHHhhhcCCCcEEEEecccccCc-----ceeccCcccceEEEecCCCcccCCCcceEEEecHHHHH
Q 015729          146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICA-----IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE  220 (401)
Q Consensus       146 ~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~-----~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~  220 (401)
                      ..+|  ...|.+++.++|++  .|.++++|.+|..|.     .+-.+.  ++|++++|.||+|.||.| |++.++++...
T Consensus       185 S~y~--r~~d~~~~reIad~--vga~l~~D~aH~aGLIA~g~~~sP~~--~aDvvt~tTHKTlrGPrg-GiIl~~~~~~~  257 (463)
T d2a7va1         185 SAYA--RLIDYARMREVCDE--VKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYRKGVKA  257 (463)
T ss_dssp             SSCC--SCCCHHHHHHHHHH--TTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCSCSC-EEEEEECSEEE
T ss_pred             cccc--cccCHHHHHHHhhc--ccceEEechhhhhHHhhhhhhcChhh--hhhhhhchhhhhhcCCCc-eEEEEcccccc
Confidence            5444  56799999999999  999999999997553     333332  479999999999998886 88888764210


Q ss_pred             HhccCCCCccccchHHHH-HHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccC
Q 015729          221 ASKTAKSVRVFFDWKDYI-KFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQ  299 (401)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  299 (401)
                      . .+........++.... ...-.|.  -++|....+++...++....+..++...++..+|++.|.+.|.+.|+++...
T Consensus       258 ~-~~~~~~~~~~~~~~~i~~avFPg~--qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~vv~g  334 (463)
T d2a7va1         258 V-DPKTGREIPYTFEDRINFAVFPSL--QGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSG  334 (463)
T ss_dssp             E-ETTTEEEEECCCHHHHHHHHTTTT--CCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGG
T ss_pred             c-ccccCccchhHHHHHhhhhcCccc--chhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCeeecC
Confidence            0 0000000000111111 1111121  3357778888888888876665678899999999999999999999999863


Q ss_pred             CCccCCceeEEEEc-CCCCCHHHHHHHHHhhCCeEEccCCC-----CCCCcEEEEeeccc----CCHHHHHHHHHHHHHH
Q 015729          300 KEEWFSDTVTAVIV-PSHINSSEIVRRAWQRYNLSLGLGLN-----KVAGKVFRIGHLGH----LNELQLLGCLAGVEMI  369 (401)
Q Consensus       300 ~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~~~i~v~~g~~-----~~~~~~~Ri~~~~~----~~~~di~~~~~~i~~~  369 (401)
                      .   ..++++.+.+ +.+++..+..+.|. +.||.+....-     +.....+||++..-    ..++|+.++.+.|.++
T Consensus       335 g---TdnHlvlvdl~~~~~~G~~ae~~Le-~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~  410 (463)
T d2a7va1         335 G---TDNHLVLVDLRPKGLDGARAERVLE-LVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEG  410 (463)
T ss_dssp             S---CSSSEEEEECTTTTCCHHHHHHHHH-HTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             C---CCCceeeeeccccCCCHHHHHHHHH-hccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHH
Confidence            2   3445666776 34677778877775 55998764321     12234599998662    3578999999999887


Q ss_pred             HH
Q 015729          370 LK  371 (401)
Q Consensus       370 l~  371 (401)
                      ++
T Consensus       411 l~  412 (463)
T d2a7va1         411 VN  412 (463)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=2.6e-23  Score=195.42  Aligned_cols=319  Identities=11%  Similarity=-0.016  Sum_probs=199.4

Q ss_pred             CcCChHHHHHHHccC---cCCCCCccHHHHHHHHHHHHHHHhcCC-----CCceEEecCChhHH----HHHHHhccCCCC
Q 015729           17 PVHIPDQVIRAMNRN---NEDYRSPAVPALTKTLLEDIKKIFKTT-----SGTPFLIPTTGTGA----WESALTNTLSPG   84 (401)
Q Consensus        17 p~~~~~~v~~a~~~~---~~~~~~~~~~~~~~~l~~~la~~~g~~-----~~~~i~~~~g~t~a----~~~~~~~~~~~g   84 (401)
                      ..+..+.|.+|....   ......|.+.....++|+.+++++...     .++.++.+.+++.+    +.+++..++.||
T Consensus        42 ~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pg  121 (397)
T d3tata_          42 IIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPE  121 (397)
T ss_dssp             SCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSS
T ss_pred             CCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCC
Confidence            456678888886542   222334556677789999999988654     23336655555543    444555678999


Q ss_pred             CeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCC--CCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHH
Q 015729           85 DRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE--GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKV  159 (401)
Q Consensus        85 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i  159 (401)
                      |+|++++|+|+++.  ..++..|++++.+++..++  ..|.+++.+.+...+ ++++++++++++||||.+++   +++|
T Consensus       122 d~Vlv~~P~y~~y~--~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~NPTG~~~s~~~~~~l  198 (397)
T d3tata_         122 SGVWVSDPTWENHV--AIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLP-ARSIVLLHPCCHNPTGADLTNDQWDAV  198 (397)
T ss_dssp             CCCEECSSCCTTHH--HHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCC-SSCCCEECSSSCSSSCCCCCHHHHHHH
T ss_pred             CcceecccCccccH--HHHHHcCCEEEEEecchhhccccchHHHHHHhhhcc-cccEEEEecCCCCCCCeeCCHHHHHHH
Confidence            99999999888765  5677889999999986653  457788777776544 56789999999999999997   5678


Q ss_pred             HHHhhhcCCCcEEEEecccccCccee---------ccCcccceEEEecCCCcccCCC--cceEEEecHHHHHHhccCCCC
Q 015729          160 RKLLDEYRHPALFLVDGVSSICAIDF---------RMDEWGIDVALTGSQKALSLPT--GMGIVCASPKALEASKTAKSV  228 (401)
Q Consensus       160 ~~l~~~~~~~~~li~D~a~~~~~~~~---------~~~~~~~di~~~s~~K~l~g~~--g~G~l~~~~~~~~~~~~~~~~  228 (401)
                      .++|++  ++++||+|++|.......         ........+++.|.+|.++ .+  ++|++++.....+.....   
T Consensus       199 ~~~a~~--~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~RiG~~~~~~~~~~~~~~~---  272 (397)
T d3tata_         199 IEILKA--RELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFS-LYGERVGGLSVMCEDAEAAGRV---  272 (397)
T ss_dssp             HHHHHH--TTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHT-BTTTCCBCCEEECSSTTHHHHH---
T ss_pred             HHHHhh--cCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCccccc-ccCccccccccchhHHHHHHHH---
Confidence            889999  999999999987543211         0111223578889999884 44  469998776543222110   


Q ss_pred             ccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHH--HHH---hcHHHHHHHHHHHHHHHHHHHHHcC----CccccC
Q 015729          229 RVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDL--IFE---EGLENVIERHRRLGKATRLAVEAWG----LKNCTQ  299 (401)
Q Consensus       229 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~--~~~---~g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~  299 (401)
                            .........+ .+.+.+.. ...++...+..  ...   ..++..++++.+.++.+.+.|.+.+    +.+..+
T Consensus       273 ------~~~~~~~~~~-~~~~~~~~-~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~  344 (397)
T d3tata_         273 ------LGQLKATVRR-NYSSPPNF-GAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLN  344 (397)
T ss_dssp             ------HHHHHHHTTT-TTSSCCSH-HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSCTTHHHH
T ss_pred             ------HHHHHHHhhc-ccccccHH-HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcC
Confidence                  0000111111 11222333 22222222211  011   1133444555555555555555532    333332


Q ss_pred             CCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          300 KEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                          ..+.++|+.+    + .+.+++|.+++||.+.+|.        ||++.+ +++++|+++.++|.+++
T Consensus       345 ----~~G~F~~~~l----s-~e~~~~L~~e~~V~l~~g~--------Ri~~a~-~~~~~i~~~~~ai~~v~  397 (397)
T d3tata_         345 ----QRGMFSYTGL----S-AAQVDRLREEFGVYLIASG--------RMCVAG-LNTANVQRVAKAFAAVM  397 (397)
T ss_dssp             ----CCSSBCCCCC----C-HHHHHHHTTTTCEECCSSS--------CCBTTS-CCTTTHHHHHHHHHHHC
T ss_pred             ----CCceEEecCc----C-HHHHHHHHHhCCEEeCCCC--------EEEecc-CCHHHHHHHHHHHHHhC
Confidence                3444555544    2 4567888888899987652        887655 88999999999998763

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3.6e-22  Score=187.50  Aligned_cols=318  Identities=13%  Similarity=0.011  Sum_probs=201.0

Q ss_pred             cCChHHHHHHHccCc--CCCCCccHHHHHHHHHHHHHHHhcCC------CC-ceEEecCChhHHHHHHH--hccCCCCCe
Q 015729           18 VHIPDQVIRAMNRNN--EDYRSPAVPALTKTLLEDIKKIFKTT------SG-TPFLIPTTGTGAWESAL--TNTLSPGDR   86 (401)
Q Consensus        18 ~~~~~~v~~a~~~~~--~~~~~~~~~~~~~~l~~~la~~~g~~------~~-~~i~~~~g~t~a~~~~~--~~~~~~gd~   86 (401)
                      .++++.|.+++.+..  .....|.......++|+.+++++...      +. ...+.+.+++.++.+++  ...+.+||.
T Consensus        43 ~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~  122 (396)
T d2q7wa1          43 TPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKR  122 (396)
T ss_dssp             CCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceE
Confidence            456678888776522  11223555567778999998877432      11 22344666665555443  445789999


Q ss_pred             EEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCC--CCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHH
Q 015729           87 IISFLIGQFSLLWIDQQQRLNFNVDVVESDWGE--GAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRK  161 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~  161 (401)
                      |++++|+|+++.  ..++..|++++.++...+.  ..+...+++...+.. .+++++++++|+||||.+++   +++|.+
T Consensus       123 Vlvp~P~y~~y~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~P~NPTG~~~s~e~~~~l~~  199 (396)
T d2q7wa1         123 VWVSNPSWPNHK--SVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQ-AGDVVLFHGCCHNPTGIDPTLEQWQTLAQ  199 (396)
T ss_dssp             EEEEESCCTHHH--HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCC-TTCEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred             EEEecCCCccch--HHHHHcCCeeEecccccccccccccchHHHHHHHhc-cCcEEEEecCCcCCcCeecCHHHHHHHHH
Confidence            999999877664  5678899999999975443  346677777665544 56789999999999999997   557888


Q ss_pred             HhhhcCCCcEEEEecccccCccee---------ccCcccceEEEecCCCcccCCC--cceEEEecHHHHHHhccCCCCcc
Q 015729          162 LLDEYRHPALFLVDGVSSICAIDF---------RMDEWGIDVALTGSQKALSLPT--GMGIVCASPKALEASKTAKSVRV  230 (401)
Q Consensus       162 l~~~~~~~~~li~D~a~~~~~~~~---------~~~~~~~di~~~s~~K~l~g~~--g~G~l~~~~~~~~~~~~~~~~~~  230 (401)
                      +|++  ++++||+|++|......-         ..+.....+++.|.+|.++ .+  ++|++.+.+...+......    
T Consensus       200 la~~--~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~-~~G~R~G~~~~~~~~~~~~~~~~----  272 (396)
T d2q7wa1         200 LSVE--KGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFG-LYNERVGACTLVAADSETVDRAF----  272 (396)
T ss_dssp             HHHH--HTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTT-CGGGCCEEEEEECSSHHHHHHHH----
T ss_pred             HHhc--CCeEEEEeccccccccCCccCchHhhhhhhhccccccccccccccc-ccCCCccccccchhHHHHHHHhh----
Confidence            9999  999999999987543210         0111234567777788773 44  4699998776544333210    


Q ss_pred             ccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHH--HH---HHhcHHHHHHHHHHHHHHHHHHHHHcCCc----cccCCC
Q 015729          231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALD--LI---FEEGLENVIERHRRLGKATRLAVEAWGLK----NCTQKE  301 (401)
Q Consensus       231 ~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~--~~---~~~g~~~~~~~~~~~~~~l~~~L~~~g~~----~~~~~~  301 (401)
                           ...... .... ..+++.....++...+.  ..   ..+.++..+++++++++.+.+.|+++|..    ...+  
T Consensus       273 -----~~~~~~-~~~~-~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~--  343 (396)
T d2q7wa1         273 -----SQMKAA-IRAN-YSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIK--  343 (396)
T ss_dssp             -----HHHHHH-HHTT-TSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHH--
T ss_pred             -----hhhhhh-hhcc-ccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceecC--
Confidence                 000000 0111 12233333333322221  11   12235667788888899999999987533    2232  


Q ss_pred             ccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          302 EWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                        ..+.+.|+.+    + .+.+++|.+++||.+.+|.        ||++.+ +++++|++++++|.+++
T Consensus       344 --~~G~F~~~~l----~-~e~~~~L~~e~gV~~~~g~--------Ri~~a~-l~~~~i~~~~~ai~~v~  396 (396)
T d2q7wa1         344 --QNGMFSFSGL----T-KEQVLRLREEFGVYAVASG--------RVNVAG-MTPDNMAPLCEAIVAVL  396 (396)
T ss_dssp             --CCSSEEECCC----C-HHHHHHHHHHHCEECCTTC--------EEEGGG-CCTTTHHHHHHHHHHHC
T ss_pred             --CCeEEEeeCC----C-HHHHHHHHHhCCEEECCCC--------EEEecC-CCHHHHHHHHHHHHHhC
Confidence              2345555444    3 3556777777799876542        997655 78899999999998763

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.89  E-value=1e-20  Score=174.62  Aligned_cols=346  Identities=12%  Similarity=0.091  Sum_probs=237.8

Q ss_pred             CcccccCCCcCChHHHHHHHccCcCCCC-----------Ccc-HHHHHHHHHHHHHHHhcCCCCce-E-EecCChhHHHH
Q 015729            9 KNHLFVPGPVHIPDQVIRAMNRNNEDYR-----------SPA-VPALTKTLLEDIKKIFKTTSGTP-F-LIPTTGTGAWE   74 (401)
Q Consensus         9 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~-----------~~~-~~~~~~~l~~~la~~~g~~~~~~-i-~~~~g~t~a~~   74 (401)
                      +...++++=-.+++.|++++.....+.+           +.. ..++...+.++..++||.++..+ + +-..||+.|+.
T Consensus        32 ~~l~LIaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~  111 (470)
T d1rv3a_          32 VGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANF  111 (470)
T ss_dssp             SSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHH
T ss_pred             cCceEecCCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHH
Confidence            4567788888899999999998554322           111 23344456677899999874322 2 44678999999


Q ss_pred             HHHhccCCCCCeEEEEcC---CcchHHH-----HHHHHHcCCcEEEEeCCCC-CCCChHHHHHHHhccCCCCceEEEEEe
Q 015729           75 SALTNTLSPGDRIISFLI---GQFSLLW-----IDQQQRLNFNVDVVESDWG-EGAKLDVLASKLAADTAHTIKAICIVH  145 (401)
Q Consensus        75 ~~~~~~~~~gd~vl~~~~---~~~~~~~-----~~~~~~~g~~~~~v~~~~~-~~~d~~~le~~~~~~~~~~~~~i~~~~  145 (401)
                      ++..++++|||+|+..+.   ||.++..     ..-......+....+++++ +.+|.+++++.+++   .+|++|++..
T Consensus       112 av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~---~kPklIi~G~  188 (470)
T d1rv3a_         112 AVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARL---FHPKLIIAGT  188 (470)
T ss_dssp             HHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH---HCCSEEEECC
T ss_pred             HHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHh---hCcceEeech
Confidence            999999999999999876   4444421     0011112346677777765 57999999999887   5789998886


Q ss_pred             cCCCcccccchHHHHHHhhhcCCCcEEEEecccccCc-----ceeccCcccceEEEecCCCcccCCCcceEEEecHHHHH
Q 015729          146 NETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICA-----IDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALE  220 (401)
Q Consensus       146 ~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~-----~~~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~  220 (401)
                      ..+|  ...|.+++.++|++  .|.+|++|.+|..|.     .+-.+.  ++|++++|.||+|.||.| |++.++++.-.
T Consensus       189 S~y~--r~~d~~~~reIad~--vga~l~~D~aH~aGLIA~g~~~sPl~--~aDvvt~tTHKtlrGPrg-GiI~~~~~~~~  261 (470)
T d1rv3a_         189 SCYS--RNLDYGRLRKIADE--NGAYLMADMAHISGLVVAGVVPSPFE--HCHVVTTTTHKTLRGCRA-GMIFYRRGVRS  261 (470)
T ss_dssp             SSCC--SCCCHHHHHHHHHH--TTCEEEEECTTTHHHHHHTSSCCGGG--TCSEEEEESSGGGCCCSC-EEEEEECSBCC
T ss_pred             hhcc--ccCCHHHHHHHHhc--cCCeEEecchhhhhhccccccCChhh--eeeeeeeehhhhccCCcc-eEEEEcccccc
Confidence            5544  56799999999999  999999999997653     333333  469999999999998887 99888764210


Q ss_pred             HhccCCCCccccchHHHHHH-hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccC
Q 015729          221 ASKTAKSVRVFFDWKDYIKF-YNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQ  299 (401)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  299 (401)
                      . .+........++....+. .-.|.  -++|....+++...++.......++...++..++++.|.+.|.+.|+++...
T Consensus       262 ~-~~~~~~~~~~~~~~~i~~avFPg~--qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~G~~v~~g  338 (470)
T d1rv3a_         262 V-DPKTGKEILYNLESLINSAVFPGL--QGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTG  338 (470)
T ss_dssp             --------CCBCCHHHHHHHHHTTTT--CCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGG
T ss_pred             c-cccccchhHHHHHHHHhhhcCccc--cccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhCCceeccC
Confidence            0 000000111122222111 11121  3457778888888888776655578899999999999999999999999763


Q ss_pred             CCccCCceeEEEEc-CCCCCHHHHHHHHHhhCCeEEccCCC-----CCCCcEEEEeecc----cCCHHHHHHHHHHHHHH
Q 015729          300 KEEWFSDTVTAVIV-PSHINSSEIVRRAWQRYNLSLGLGLN-----KVAGKVFRIGHLG----HLNELQLLGCLAGVEMI  369 (401)
Q Consensus       300 ~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~~~i~v~~g~~-----~~~~~~~Ri~~~~----~~~~~di~~~~~~i~~~  369 (401)
                      .   ..++++.+.+ +.+++..+..+.|. +.||.+....-     +.....+||++..    ...++|++++.+.|.++
T Consensus       339 g---TdnHlvlvdl~~~g~~g~~ae~~Le-~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~  414 (470)
T d1rv3a_         339 G---SDNHLILVDLRSKGTDGGRAEKVLE-ACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRG  414 (470)
T ss_dssp             S---CSSSEEEEEGGGGTCCHHHHHHHHH-HTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             C---CCCceEEEeecccCCcHHHHHHHHH-HcCcEECCCcCCCCCCCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHH
Confidence            2   3345666666 34678878777775 55998753321     1223569999865    23589999999999887


Q ss_pred             HH
Q 015729          370 LK  371 (401)
Q Consensus       370 l~  371 (401)
                      ++
T Consensus       415 l~  416 (470)
T d1rv3a_         415 IE  416 (470)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.88  E-value=1.2e-20  Score=173.07  Aligned_cols=290  Identities=14%  Similarity=0.105  Sum_probs=203.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDW  117 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~  117 (401)
                      .......|++.|+.+.|.+.   .+++++|..|+..++.+++++||+|++....|.+..  ......+.|+++.+++.. 
T Consensus        61 ~nPT~~~LE~~la~LEgg~~---a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~-  136 (397)
T d1y4ia1          61 GNPTTDALEKKLAVLERGEA---GLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAG-  136 (397)
T ss_dssp             SCHHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-
T ss_pred             CCHHHHHHHHHHHHHhCCcc---ceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceEeeccCCC-
Confidence            34677899999999998865   677889999999999999999999999999877765  345667789999998754 


Q ss_pred             CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEe
Q 015729          118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT  197 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~  197 (401)
                          |++.+++++++    ++++|++..|.||+..+.|+++|.++|++  +|+++++|.+.+.+. .+..-+.|+|+++.
T Consensus       137 ----d~~~~~~~i~~----~Tklv~~Esp~NP~l~v~Di~~i~~iA~~--~gi~~vvDnT~atP~-~~~Pl~~GaDivih  205 (397)
T d1y4ia1         137 ----KPEEIRAAMRP----ETKVVYIETPANPTLSLVDIETVAGIAHQ--QGALLVVDNTFMSPY-CQQPLQLGADIVVH  205 (397)
T ss_dssp             ----SHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHH--TTCEEEEECTTTCTT-TCCGGGGTCSEEEE
T ss_pred             ----CHHHHHHhcCC----CCcEEEecCCcccceeecccHHHHHHhhc--CCceEEecCcccCcc-cCcchhcCCCEEEE
Confidence                79999999974    67999999999999999999999999999  999999999866432 23445678999999


Q ss_pred             cCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHH
Q 015729          198 GSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI  275 (401)
Q Consensus       198 s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  275 (401)
                      |.+|+++|...  .|.++++++.+.+.+-.             . +..  .+...+++..+.   .+++-++  -+.-++
T Consensus       206 S~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~-------------~-~~~--~~G~~l~p~~a~---l~~rgl~--TL~lRm  264 (397)
T d1y4ia1         206 SVTKYINGHGDVIGGIIVGKQEFIDQARFV-------------G-LKD--ITGGCMSPFNAW---LTLRGVK--TLGIRM  264 (397)
T ss_dssp             ETTTTTTCSSCCCCEEEEECHHHHHHHHHT-------------H-HHH--TTCCCCCHHHHH---HHHHHHT--THHHHH
T ss_pred             ehhhhcCCCcceeeeccCCCHHHHHHHHHH-------------H-HHh--CcCCcCCHHHHH---HHHcCcC--cHHHHH
Confidence            99999987643  38999999876654311             0 000  012346664333   3333222  256788


Q ss_pred             HHHHHHHHHHHHHHHHc-CCc-cccC----CCc--------cCCceeEEEEcCCCCCHHHHHHHHHhhCCe---EEccCC
Q 015729          276 ERHRRLGKATRLAVEAW-GLK-NCTQ----KEE--------WFSDTVTAVIVPSHINSSEIVRRAWQRYNL---SLGLGL  338 (401)
Q Consensus       276 ~~~~~~~~~l~~~L~~~-g~~-~~~~----~~~--------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i---~v~~g~  338 (401)
                      ++..+++..+.+.|++. .++ +.-+    .+.        ...+.++.|.+..+   .+-+.++.++..+   .+..|.
T Consensus       265 ~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~---~~~~~~f~~~L~l~~~a~SlGg  341 (397)
T d1y4ia1         265 ERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGG---LEAGRRMINSVELCLLAVSLGD  341 (397)
T ss_dssp             HHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTH---HHHHHHHHHTCSSSEECSCCSC
T ss_pred             HHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecCC---HHHHHHHHHcCCccceeeccCc
Confidence            99999999999999974 322 1111    110        12356888887422   2333344343232   222221


Q ss_pred             C-----------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          339 N-----------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       339 ~-----------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .                       ...++.+|+++..    ||++.+++-|+++|+.
T Consensus       342 ~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGl----Ed~~DLi~Dl~~AL~~  394 (397)
T d1y4ia1         342 TETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGL----EDPEDIINDLEHAIRK  394 (397)
T ss_dssp             SSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred             ccceeeCccccccccCCHHHHHHcCCCcCEEEEEecc----CCHHHHHHHHHHHHHH
Confidence            1                       0134679998654    7777777777777753

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=4.4e-21  Score=175.45  Aligned_cols=314  Identities=11%  Similarity=0.025  Sum_probs=205.0

Q ss_pred             CChHHHHHHHccCcCCC-CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchH
Q 015729           19 HIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSL   97 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~   97 (401)
                      +.+|+|++|+.+....+ ..+...+...++++.+++++|.+.  .++|++|||+|++.++...+.+++.+++....|++.
T Consensus        14 g~~P~v~~A~~~a~~~~~~~~~~~~~~~~l~~~la~~~g~~~--~v~f~~sGt~An~~a~~~~~~~~~~~~~~~~~~~~~   91 (345)
T d1v72a1          14 GASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDV--EVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINN   91 (345)
T ss_dssp             CCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHTSCC--EEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHH
T ss_pred             CCCHHHHHHHHHHhccCccccCCCHHHHHHHHHHHHHHCCCc--EEEECCchHHHHHHHHHHHHhcCCccccccccceee
Confidence            35889999999865444 344556788999999999999864  388999999999999999889999988888877766


Q ss_pred             H-HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCC--CCceE-EEEEecCCCccccc---chHHHHHHhhhcCCCc
Q 015729           98 L-WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA--HTIKA-ICIVHNETATGVTN---NLSKVRKLLDEYRHPA  170 (401)
Q Consensus        98 ~-~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~--~~~~~-i~~~~~~n~tG~~~---~l~~i~~l~~~~~~~~  170 (401)
                      . ........+..+..+....++..+++.+++.+.....  ..+.. ++.....++.|...   +++++.++|++  +|+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~  169 (345)
T d1v72a1          92 DECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKS--SSL  169 (345)
T ss_dssp             SSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHH--TTC
T ss_pred             echhhHHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHh--cCc
Confidence            5 3345566677788887777778899999999875331  12333 33334445555554   46778889999  999


Q ss_pred             EEEEecccccCcceec---c----CcccceEEEecCCCcccCCCcceEEEecHH-HHHHhccCCCCccccchHHHHHHhh
Q 015729          171 LFLVDGVSSICAIDFR---M----DEWGIDVALTGSQKALSLPTGMGIVCASPK-ALEASKTAKSVRVFFDWKDYIKFYN  242 (401)
Q Consensus       171 ~li~D~a~~~~~~~~~---~----~~~~~di~~~s~~K~l~g~~g~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  242 (401)
                      ++++|+++..+....+   .    .....+....+.+|..  ....+....... .......              ....
T Consensus       170 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--------------~~~~  233 (345)
T d1v72a1         170 GLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNG--VLAAEAIVLFNTSLATEMSY--------------RRKR  233 (345)
T ss_dssp             EEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGT--CSSCEEEEESSGGGHHHHHH--------------HHHH
T ss_pred             eeeecccccceeccccccCHHHhhccccccccccCccccc--cccccccccchhhhhhhccc--------------cccc
Confidence            9999999875432211   1    1123455666666644  332333333332 2111110              0111


Q ss_pred             cCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCCCCCHHH
Q 015729          243 LGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPSHINSSE  321 (401)
Q Consensus       243 ~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (401)
                      .+.    +.+.. ..++.++..........+...+..++.+++.+.+.++ |+.+..+.   .. .++++.++     .+
T Consensus       234 ~~~----~~~~~-~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~---~~-niv~~~~~-----~~  299 (345)
T d1v72a1         234 AGH----LSSKM-RFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGT---EA-NILFCRLD-----SA  299 (345)
T ss_dssp             TTC----CCSST-HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCC---CS-SEEEEEEC-----HH
T ss_pred             ccc----ccchh-hHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEeccCC---Cc-cEEEEEcC-----HH
Confidence            111    11111 1233333343334345667777778888888888887 76665432   23 36667773     35


Q ss_pred             HHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          322 IVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       322 l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      +.+.|+++ |+.+..+.  ...+.+||++..++|+||||+++++|+++
T Consensus       300 ~~~~L~~~-gi~v~~~~--~~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         300 MIDALLKA-GFGFYHDR--WGPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             HHHHHHHT-TCBCBCSS--SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHc-CCCccccC--CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            67778776 88775442  23578999988899999999999999864

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=3.7e-20  Score=169.73  Aligned_cols=216  Identities=18%  Similarity=0.133  Sum_probs=168.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      ......|+++|+++.|.+.   .+++++|..|+..++.+++++||+|++....|.+..  +.......|+++.+++..  
T Consensus        58 nPT~~~LE~~la~LEg~~~---a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~--  132 (392)
T d1gc0a_          58 NPTLNLLEARMASLEGGEA---GLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA--  132 (392)
T ss_dssp             CHHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT--
T ss_pred             ChHHHHHHHHHHHHhCCcc---eeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCcc--
Confidence            3557799999999998765   677899999999999999999999999999888876  445667789999988754  


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                         |++++++++++    ++++|++..|.||+..+.|+++|+++|++  +|+++++|.+.+.+.. +..-++|+|+++.|
T Consensus       133 ---d~~~~~~ai~~----~t~lv~~Esp~NP~l~v~Di~~i~~ia~~--~g~~~vvDnT~atP~~-~~Pl~~GaDivihS  202 (392)
T d1gc0a_         133 ---DLQALEAAMTP----ATRVIYFESPANPNMHMADIAGVAKIARK--HGATVVVDNTYCTPYL-QRPLELGADLVVHS  202 (392)
T ss_dssp             ---CHHHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHGG--GTCEEEEECTTTHHHH-CCGGGGTCSEEEEE
T ss_pred             ---CHHHHHHhCCC----CCeEEEecccccceeeecchHHHHHHHHh--cCCEEEEecCccCccc-cChHHhCCCEEEEe
Confidence               79999999984    56999999999999999999999999999  9999999999764432 34446789999999


Q ss_pred             CCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHH
Q 015729          199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE  276 (401)
Q Consensus       199 ~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~  276 (401)
                      .+|+++|...  .|.++++++.+.+++...           ... ..|    ...++..+.-+...++     -+..+++
T Consensus       203 ~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~-----------~~~-~~G----~~~~p~da~ll~rgl~-----TL~lRm~  261 (392)
T d1gc0a_         203 ATKYLSGHGDITAGIVVGSQALVDRIRLQG-----------LKD-MTG----AVLSPHDAALLMRGIK-----TLNLRMD  261 (392)
T ss_dssp             TTTTTTCSSSCCCEEEEECHHHHHHHHHTH-----------HHH-HTC----CCCCHHHHHHHHHHHT-----THHHHHH
T ss_pred             cceeecCCcccccccccchhHHHHHHHHHH-----------HHH-ccC----CcCChhhHHHHHhccc-----cHHHHHH
Confidence            9999987532  389999998876543210           011 113    2466643332322222     2567889


Q ss_pred             HHHHHHHHHHHHHHHc
Q 015729          277 RHRRLGKATRLAVEAW  292 (401)
Q Consensus       277 ~~~~~~~~l~~~L~~~  292 (401)
                      +..+++..+.+.|++.
T Consensus       262 ~~~~nA~~lA~~L~~h  277 (392)
T d1gc0a_         262 RHCANAQVLAEFLARQ  277 (392)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999999874

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.87  E-value=6e-20  Score=170.81  Aligned_cols=323  Identities=12%  Similarity=0.100  Sum_probs=204.6

Q ss_pred             HHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCCCeEEEEcCCcchHHHH
Q 015729           22 DQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSLLWI  100 (401)
Q Consensus        22 ~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~~~~  100 (401)
                      +.|.+.+...+...    .+....++++.+++++|.+.   +++++|||.|+.+++.++ +++||+|+++...+....  
T Consensus         5 ~~~~~~l~~~~~~~----~G~~~~~fE~~~~~~~~~~~---~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~--   75 (374)
T d1o69a_           5 KYIEEVFKSNYIAP----LGEFVNRFEQSVKDYSKSEN---ALALNSATAALHLALRVAGVKQDDIVLASSFTFIASV--   75 (374)
T ss_dssp             HHHHHHHHHTTTSC----TTHHHHHHHHHHHHHHCCSE---EEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGT--
T ss_pred             HHHHHHHhcCCcCC----CCHHHHHHHHHHHHHHCcCe---EEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhH--
Confidence            34555555543222    24668899999999999986   889999999999999886 889999999998776653  


Q ss_pred             HHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEeccccc
Q 015729          101 DQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSI  180 (401)
Q Consensus       101 ~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~  180 (401)
                      ......|++++.++++++......+.+......+ .++++++++|.   .|...++++|.++|++  +|++||+|+||++
T Consensus        76 ~~~~~~g~~pv~~Di~~~~~~~~~~~~~~~~~~~-~~~~aii~~~~---~G~~~d~~~i~~~~~~--~~i~vIED~a~a~  149 (374)
T d1o69a_          76 APICYLKAKPVFIDCDETYNIDVDLLKLAIKECE-KKPKALILTHL---YGNAAKMDEIVEICKE--NDIVLIEDAAEAL  149 (374)
T ss_dssp             HHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCS-SCCCEEEEECG---GGCCCCHHHHHHHHHH--TTCEEEEECTTCT
T ss_pred             HHHhhccceeEecccccccccccccccccchhcc-ccccccccccc---ccchhhhHHHHHHhhc--cCcchhhhhhhhh
Confidence            4566789999999998765444444444333333 46788888864   6889999999999999  9999999999999


Q ss_pred             CcceeccCccc--ceEEE--ecCCCcccCCCcceEEE-ecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHH
Q 015729          181 CAIDFRMDEWG--IDVAL--TGSQKALSLPTGMGIVC-ASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQL  255 (401)
Q Consensus       181 ~~~~~~~~~~~--~di~~--~s~~K~l~g~~g~G~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  255 (401)
                      |+.... ...|  -|+.+  +..+|.+.++.| |+++ -+++..+++..............  .....|.  -.-.+.  
T Consensus       150 g~~~~~-~~~G~~gd~~~fSf~~~K~l~tgeG-G~i~tnn~~~~~~~~~~~~~g~~~~~~~--~~~~~G~--N~rm~e--  221 (374)
T d1o69a_         150 GSFYKN-KALGTFGEFGVYSYNGNKIITTSGG-GMLIGKNKEKIEKARFYSTQARENCLHY--EHLDYGY--NYRLSN--  221 (374)
T ss_dssp             TCEETT-EETTSSSSEEEEECCTTSSSCCSSC-EEEEESCHHHHHHHHHHTBTCCCSSSSC--CCSSCCC--BCBCCH--
T ss_pred             cceECC-eecCCCCceEEEeccCccccccccc-eeehhhhHHHHHhhcccccccccccccc--ccccCCc--cccccc--
Confidence            875322 1111  25544  455699977766 5555 45666655543321110000000  0000111  111222  


Q ss_pred             HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCccCCceeEEEEcCC-------------------
Q 015729          256 LYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEEWFSDTVTAVIVPS-------------------  315 (401)
Q Consensus       256 ~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-------------------  315 (401)
                         +.+|+...+-..+++..++.+++++++.+.|.+. .............+....+...+                   
T Consensus       222 ---i~Aaig~~qL~~l~~~i~~r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (374)
T d1o69a_         222 ---VLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNIT  298 (374)
T ss_dssp             ---HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCC
T ss_pred             ---hhhhhhHHHHhhhhhhcchhHHHHHHHHhhccccccccccccCCCCChhheeeeeccccccccccccccccchhhcc
Confidence               3445544444456777888888888888888764 22111111111112122111100                   


Q ss_pred             -CCCHHHHHHHHHhhCCeEEccCCCCC--------------------CCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          316 -HINSSEIVRRAWQRYNLSLGLGLNKV--------------------AGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       316 -~~~~~~l~~~L~~~~~i~v~~g~~~~--------------------~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                       ..+...+.+.|.++ ||.+++.+.+.                    ....+.+.++..+|++|+++.++.|.++++
T Consensus       299 ~~~~r~~l~~~L~~~-gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~lk  374 (374)
T d1o69a_         299 LHPKISKLIEDLKNK-QIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK  374 (374)
T ss_dssp             CCHHHHHHHHHHHHT-TCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             chhhHHHHHHHHHHC-CCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHHHHHHC
Confidence             11245788888766 99877654311                    013388877788999999999999998863

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=3.3e-21  Score=180.75  Aligned_cols=319  Identities=15%  Similarity=0.094  Sum_probs=195.0

Q ss_pred             CcCChHHHHHHHccCcC--CCCCccHHHHHHHHHHHHHHHhc----CCCCceEEecCChhHH--HHHHHhccCCCCCeEE
Q 015729           17 PVHIPDQVIRAMNRNNE--DYRSPAVPALTKTLLEDIKKIFK----TTSGTPFLIPTTGTGA--WESALTNTLSPGDRII   88 (401)
Q Consensus        17 p~~~~~~v~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~g----~~~~~~i~~~~g~t~a--~~~~~~~~~~~gd~vl   88 (401)
                      ..++.+.|.+|+++...  ....|.+.....++|+.+++++.    .......+++.+++.+  +...+...+.+||.|+
T Consensus        42 ~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~  121 (394)
T d2ay1a_          42 HTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVF  121 (394)
T ss_dssp             CCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred             CCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhcCCceEEE
Confidence            34566788888766321  11234444566678888877753    2222224445555544  4444556789999999


Q ss_pred             EEcCCcchHHHHHHHHHcCCcEEEEeCCCC--CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---hHHHHHHh
Q 015729           89 SFLIGQFSLLWIDQQQRLNFNVDVVESDWG--EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---LSKVRKLL  163 (401)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~  163 (401)
                      +++|+++.+.  ..++..|++++.++...+  ...+.+++++...... +++++++++.+|||||.+++   +++|+++|
T Consensus       122 ~p~p~~~~y~--~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la  198 (394)
T d2ay1a_         122 VSDPTWPNHV--SIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAK-KGDMVLLHGCCHNPTGANLTLDQWAEIASIL  198 (394)
T ss_dssp             EEESCCHHHH--HHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCC-TTCEEEEESSSCTTTCCCCCHHHHHHHHHHH
T ss_pred             EecccccchH--HHHHHcCCEEEEecccchhcccccchhHHHHHhhcc-cCcEEEEeCCCCCCCCCCCCHHHHHHHHHHh
Confidence            9999766654  567788999999987543  3346677777665544 45678888899999999997   66788999


Q ss_pred             hhcCCCcEEEEecccccCccee---------ccCcccceEEEecCCCcccC-CCcceEEEecHHHHHHhccCCCCccccc
Q 015729          164 DEYRHPALFLVDGVSSICAIDF---------RMDEWGIDVALTGSQKALSL-PTGMGIVCASPKALEASKTAKSVRVFFD  233 (401)
Q Consensus       164 ~~~~~~~~li~D~a~~~~~~~~---------~~~~~~~di~~~s~~K~l~g-~~g~G~l~~~~~~~~~~~~~~~~~~~~~  233 (401)
                      ++  ++++||+|++|......-         ........++..|.+|.++. +.++|++.+.....+.....        
T Consensus       199 ~~--~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~--------  268 (394)
T d2ay1a_         199 EK--TGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELA--------  268 (394)
T ss_dssp             HH--HTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHH--------
T ss_pred             hc--ceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCcccccchhhchhHHHHHHHh--------
Confidence            99  999999999987543211         01111234556667776642 23468888776554333211        


Q ss_pred             hHHHHHHhhcCCCCCCCCcHHHHHHHHHHHH--HH---HHhcHHHHHHHHHHHHHHHHHHHHHcC----CccccCCCccC
Q 015729          234 WKDYIKFYNLGTFWPYTPSIQLLYGLRAALD--LI---FEEGLENVIERHRRLGKATRLAVEAWG----LKNCTQKEEWF  304 (401)
Q Consensus       234 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~--~~---~~~g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~  304 (401)
                       .......... .+..++.... ..+...+.  .+   ....++..++++.++++.+.+.|++++    +....+    .
T Consensus       269 -~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~----~  341 (394)
T d2ay1a_         269 -QGAMAFLNRQ-TYSFPPFHGA-KIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAE----H  341 (394)
T ss_dssp             -HHHHHHHHHT-TTSSCCCHHH-HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHH----C
T ss_pred             -hhhhHhhhcc-cccchhHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeECC----C
Confidence             0000000111 1122233321 11111111  11   112255677788888889999998863    233332    3


Q ss_pred             CceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHH
Q 015729          305 SDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMI  369 (401)
Q Consensus       305 ~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~  369 (401)
                      .+.+.|+.+    + .+.+++|.+++||.+.+|        .||++.+ +++++|+++.++|.++
T Consensus       342 ~G~F~~~~l----s-~~~~~~L~~~~~V~~~~g--------~Ri~~a~-l~~~~i~~l~~ai~~v  392 (394)
T d2ay1a_         342 RGMFSRLGA----T-PEQVKRIKEEFGIYMVGD--------SRINIAG-LNDNTIPILARAIIEV  392 (394)
T ss_dssp             CSSEEECCC----C-HHHHHHHHHHHCEECCTT--------CEEEGGG-CCTTTHHHHHHHHHHH
T ss_pred             ceeEEecCc----C-HHHHHHHHHhCCEEecCC--------CEEEecC-CCHHHHHHHHHHHHHh
Confidence            455665544    3 456678887789998765        2897655 8899999999888775

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.87  E-value=1.4e-20  Score=175.43  Aligned_cols=307  Identities=15%  Similarity=0.074  Sum_probs=208.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCC-
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWG-  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-  118 (401)
                      +..+.++++++++++|.+.   ++.+++||.|+.+++.++ +++||+|+++...+.+..  ......|++++++++++. 
T Consensus        33 g~~v~~fE~~~a~~~g~~~---~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~--~ai~~~g~~p~~~d~~~~~  107 (384)
T d1b9ha_          33 GDEVNSFEREFAAHHGAAH---ALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSS--QAAQRLGAVTVPVDVDAAT  107 (384)
T ss_dssp             CSHHHHHHHHHHHHTTCSE---EEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHH--HHHHHTTCEEEEECBCTTT
T ss_pred             CHHHHHHHHHHHHHHCcCe---EEEeCCHHHHHHHHHHHcCCCCCCEEEEecccccccc--ccccccccccccccccccc
Confidence            3567899999999999987   788999999999999885 799999999998777654  456778999999998765 


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceec--cCcc-cceEE
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFR--MDEW-GIDVA  195 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~--~~~~-~~di~  195 (401)
                      ..+|++.+++.+.    +++++|+++   +..|...++++|.++|++  +++++|.|++|+.|+....  .... ...++
T Consensus       108 ~~~d~~~~~~~i~----~~tk~i~~~---~~~g~~~d~~~i~~~~~~--~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~  178 (384)
T d1b9ha_         108 YNLDPEAVAAAVT----PRTKVIMPV---HMAGLMADMDALAKISAD--TGVPLLQDAAHAHGARWQGKRVGELDSIATF  178 (384)
T ss_dssp             CCBCHHHHHHHCC----TTEEEECCB---CGGGCCCCHHHHHHHHHH--HTCCBCEECTTCTTCEETTEEGGGSSSCEEE
T ss_pred             cccchhhhccccc----ccccccccc---cccccccccccchhhhhh--hhhhhhhhhceecccccCCEecCccccccee
Confidence            5789999999886    466888765   467888999999999999  9999999999999875321  1111 25567


Q ss_pred             EecCCCcccCCCcceEEEec-HHHHHHhccCCCCccccchHHHHHH---hhcCCCCCCCCcHHHHHHHHHHHHHHHHhcH
Q 015729          196 LTGSQKALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKF---YNLGTFWPYTPSIQLLYGLRAALDLIFEEGL  271 (401)
Q Consensus       196 ~~s~~K~l~g~~g~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~  271 (401)
                      .++.+|.+.++.| |+++++ ++..+.+...........  .....   ...|.  ..-++.     +.+++...+-..+
T Consensus       179 Sf~~~K~i~~g~G-G~i~t~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~G~--n~rms~-----l~Aaig~~qL~~l  248 (384)
T d1b9ha_         179 SFQNGKLMTAGEG-GAVVFPDGETEKYETAFLRHSCGRP--RDDRRYFHKIAGS--NMRLNE-----FSASVLRAQLARL  248 (384)
T ss_dssp             ECCTTSSSCSSSC-EEEEECTTCHHHHHHHHHHTBTTCC--TTCSSCCCCSCCC--BCBCBH-----HHHHHHHHHHTTH
T ss_pred             ccccccccccccc-chhhhhhHHHHHHHHHHHhcCCCCc--ccccccccccccc--cccccc-----chhhhhhhhhhhc
Confidence            7788999977666 666554 555444332110000000  00000   00121  111222     2334443333457


Q ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCccccCC--CccCCceeEEEEcCCCC--CHHHHHHHHHhhCCeEEccCCCCC-----
Q 015729          272 ENVIERHRRLGKATRLAVEAW-GLKNCTQK--EEWFSDTVTAVIVPSHI--NSSEIVRRAWQRYNLSLGLGLNKV-----  341 (401)
Q Consensus       272 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~l~~~L~~~~~i~v~~g~~~~-----  341 (401)
                      ++..++.+++.+++.+.|.++ ++......  .....+.+..+.++...  +.+.+.+.|.++ ||.++..+.+.     
T Consensus       249 d~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~-GI~~~~~y~plh~~~~  327 (384)
T d1b9ha_         249 DEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEA-GLPAFAAFRAIYRTDA  327 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHT-TCCEEECCCCGGGSHH
T ss_pred             ccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceecccccccHHHHHHHHHHC-CCCeeeeCcchhcCHH
Confidence            788888899999999999886 65433221  12223334555564322  234689999766 99876654321     


Q ss_pred             ------------------------CCcEEEEeecccCC-HHHHHHHHHHHHHHHHh
Q 015729          342 ------------------------AGKVFRIGHLGHLN-ELQLLGCLAGVEMILKD  372 (401)
Q Consensus       342 ------------------------~~~~~Ri~~~~~~~-~~di~~~~~~i~~~l~~  372 (401)
                                              ..+.+++.++..+| ++|+++.++.|++++++
T Consensus       328 ~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~  383 (384)
T d1b9ha_         328 FWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR  383 (384)
T ss_dssp             HHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence                                    01348887777887 67999999999998864

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.86  E-value=2.1e-21  Score=181.97  Aligned_cols=283  Identities=8%  Similarity=-0.042  Sum_probs=179.1

Q ss_pred             HHHHHHHHHHh---c-C-CCCceEEecCChhHHHHHHHhcc--------CCCCCeEEEEcCCcchHHHHHHHHHcCCcEE
Q 015729           45 KTLLEDIKKIF---K-T-TSGTPFLIPTTGTGAWESALTNT--------LSPGDRIISFLIGQFSLLWIDQQQRLNFNVD  111 (401)
Q Consensus        45 ~~l~~~la~~~---g-~-~~~~~i~~~~g~t~a~~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~  111 (401)
                      .+|++.|+++.   | . ..+..|++++|+++++++++.++        +.|||+|+++.|.|..+.  ..++..+.+..
T Consensus       103 ~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~--~~~~~~~~~~~  180 (425)
T d2hoxa1         103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFR--EQTKYFDKKGY  180 (425)
T ss_dssp             HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHH--HHHHHSCBTTE
T ss_pred             HHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHH--HHHHHcCCCCC
Confidence            46777777654   2 1 23344999999999999999887        578999999999655443  45666777655


Q ss_pred             EEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCccc
Q 015729          112 VVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWG  191 (401)
Q Consensus       112 ~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~  191 (401)
                      .++      +|.+.++++++    .+++++++++||||||.+..       +  ..+++.+|+|+++.......-.....
T Consensus       181 ~~~------~D~~~~~~~~~----~~~~ii~l~sPnNPtG~l~~-------~--v~~~~~~I~DEaY~~~~f~~~~~~~~  241 (425)
T d2hoxa1         181 VWA------GNAANYVNVSN----PEQYIEMVTSPNNPEGLLRH-------A--VIKGCKSIYDMVYYWPHYTPIKYKAD  241 (425)
T ss_dssp             EEE------EEGGGGTTCSC----GGGEEEEEESSCTTTCCCCC-------C--SSTTCEEEEECTTCSTTTSCCCSCBC
T ss_pred             ccC------CCHHHHHhhCC----CCceEEEEECCCCCCcchhh-------h--hhhCCEEEEeccccCccccchhhhcC
Confidence            554      45666666555    36799999999999998631       2  23789999999985432211112234


Q ss_pred             ceEEEecCCCcccCCCc--ceEEEecHH-HHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHH
Q 015729          192 IDVALTGSQKALSLPTG--MGIVCASPK-ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFE  268 (401)
Q Consensus       192 ~di~~~s~~K~l~g~~g--~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~  268 (401)
                      .++++.|.+|.++ .+|  +|+++++++ +.+++...            .. +     ...+++.....++.++++....
T Consensus       242 ~~Ivl~S~SK~fg-laGlRiGw~i~~~~~i~~~~~~~------------~~-~-----~~~~vs~~~Q~aa~~aL~~~~~  302 (425)
T d2hoxa1         242 EDILLFTMSKFTG-HSGSRFGWALIKDESVYNNLLNY------------MT-K-----NTEGTPRETQLRSLKVLKEVVA  302 (425)
T ss_dssp             CSEEEEEHHHHTS-CGGGCCEEEEECCHHHHHHHHHH------------HH-H-----HTSSCCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCHHhcc-CcchheeeEEeCCHHHHHHHHHh------------hc-c-----CcccCCHHHHHHHHHHhhccHH
Confidence            6899999999884 544  699877654 43433321            00 0     0122444444444555543211


Q ss_pred             ----------hcHHHHHHHHHHHHHHHHHHHHHcCCcccc--CCCc---------cCCceeEEEEcCCCCCHHHHHHHHH
Q 015729          269 ----------EGLENVIERHRRLGKATRLAVEAWGLKNCT--QKEE---------WFSDTVTAVIVPSHINSSEIVRRAW  327 (401)
Q Consensus       269 ----------~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~---------~~~~~~~~~~~~~~~~~~~l~~~L~  327 (401)
                                .-++..+++++++.+.+.+.|.+.+.....  +.+.         ...+.+.|++.+.. +..++.+.| 
T Consensus       303 ~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~-~~~~~~~lL-  380 (425)
T d2hoxa1         303 MVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE-EDKDCYQTF-  380 (425)
T ss_dssp             HHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG-GGCSHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCC-hHHHHHHHH-
Confidence                      114556677777788888888776422211  1110         01233566666321 222344444 


Q ss_pred             hhCCeEEccCCCC-CCCcEEEEeecccCCHHHHHHHHHHHHHHHH
Q 015729          328 QRYNLSLGLGLNK-VAGKVFRIGHLGHLNELQLLGCLAGVEMILK  371 (401)
Q Consensus       328 ~~~~i~v~~g~~~-~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~  371 (401)
                      .++||.+++|... ..++++||++..  +++++++++++|++.++
T Consensus       381 ~e~gI~v~pGs~FG~~~~yvRisl~~--~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         381 QNGRINTQNGVGFEASSRYVRLSLIK--TQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             HHTTEECEEGGGGTSCTTEEEEECSS--CHHHHHHHHHHHHHHHT
T ss_pred             HhCCEEEEechhcCCCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence            4569999999543 346799998765  88999999999999885

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.86  E-value=4.7e-20  Score=171.24  Aligned_cols=327  Identities=12%  Similarity=0.050  Sum_probs=215.7

Q ss_pred             HHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-CCCC--CeEEEEcCCcchHH
Q 015729           22 DQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-LSPG--DRIISFLIGQFSLL   98 (401)
Q Consensus        22 ~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~~g--d~vl~~~~~~~~~~   98 (401)
                      ++-++++.+...+.... .++...++++.+++++|.+.   +++++|||.|+.+++.++ +.+|  |+|+++...+.+..
T Consensus        12 ~~~~~~v~~~l~~~~~~-~G~~v~~fE~~~~~~~g~k~---ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~   87 (371)
T d2fnua1          12 KEDKKAVLEVLNSKQLT-QGKRSLLFEEALCEFLGVKH---ALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATA   87 (371)
T ss_dssp             HHHHHHHHHHHTSSCCS-SSHHHHHHHHHHHHHHTCSE---EEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHH
T ss_pred             HHHHHHHHHHHcCCCcc-CCHHHHHHHHHHHHHHCcCe---EEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccc
Confidence            44455555533222111 24678899999999999986   789999999999999875 4444  47999888766554


Q ss_pred             HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEeccc
Q 015729           99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVS  178 (401)
Q Consensus        99 ~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~  178 (401)
                        ......|+++++++++.++.++++++++++.    .++++++++|   ..|...++++|.++|++  +++++|+|+||
T Consensus        88 --~ai~~~G~~pv~vDi~~~~~~~~~~~~~~~~----~~t~avi~vh---~~G~~~~~~~i~~~~~~--~~i~lIEDaaq  156 (371)
T d2fnua1          88 --NMLLESGYTPVFAGIKNDGNIDELALEKLIN----ERTKAIVSVD---YAGKSVEVESVQKLCKK--HSLSFLSDSSH  156 (371)
T ss_dssp             --HHHHHTTCEEEECCBCTTSSBCGGGSGGGCC----TTEEEEEEEC---GGGCCCCHHHHHHHHHH--HTCEEEEECTT
T ss_pred             --eeeeccCcccccccccccccccchhhhhhcc----chhhcccccc---ccccccccccccccccc--cchhhccchhh
Confidence              4566789999999999988778888777665    4779998886   57999999999999999  99999999999


Q ss_pred             ccCcceecc---CcccceEEEecCCCcccCCCcceEEEec-HHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHH
Q 015729          179 SICAIDFRM---DEWGIDVALTGSQKALSLPTGMGIVCAS-PKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQ  254 (401)
Q Consensus       179 ~~~~~~~~~---~~~~~di~~~s~~K~l~g~~g~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  254 (401)
                      +.|+.....   ....+.++.+...|.+.++.| |+++++ +++.+++......+..............|.  ..-++- 
T Consensus       157 a~Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~g~G-G~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~--n~r~se-  232 (371)
T d2fnua1         157 ALGSEYQNKKVGGFALASVFSFHAIKPITTAEG-GAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGH--NFRLNE-  232 (371)
T ss_dssp             CTTCEETTEETTSSSSEEEEECCTTSSSCCSSC-EEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCC--BCCCCH-
T ss_pred             ccCceeccccCCccccccccccccccccccccc-eEEEeechhhhhhcccccccccccccccccccccccc--cccccc-
Confidence            998753221   111245666777899977666 666555 566666554332111000000000000111  111223 


Q ss_pred             HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccC-CCccCCceeEEEEcCCC--CCHHHHHHHHHhhC
Q 015729          255 LLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQ-KEEWFSDTVTAVIVPSH--INSSEIVRRAWQRY  330 (401)
Q Consensus       255 ~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~~  330 (401)
                          +.+|+...+-..+++..++.+++.+++.+.|.+. ++.+..+ ......+....+.+++.  .+.+++.+.|.++ 
T Consensus       233 ----l~Aaigl~qL~~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~L~~~-  307 (371)
T d2fnua1         233 ----IQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKR-  307 (371)
T ss_dssp             ----HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHT-
T ss_pred             ----hhhhhhhhhhhhccchhhhhhhhhhhhcccccccccccccccccccccccccccccccccchhHHHHHHHHHHHC-
Confidence                2344444343456778888888999898988876 4444322 12223333444445321  2346788889766 


Q ss_pred             CeEEccCCCCC-----------CC----------cEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          331 NLSLGLGLNKV-----------AG----------KVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       331 ~i~v~~g~~~~-----------~~----------~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      ||.++..+.+.           .+          ..+.+.++..+|++|+++.++.|.+.++.
T Consensus       308 gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~  370 (371)
T d2fnua1         308 GILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFES  370 (371)
T ss_dssp             TEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            99987665321           11          34888788889999999999999998875

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.86  E-value=6e-20  Score=174.16  Aligned_cols=324  Identities=14%  Similarity=0.108  Sum_probs=205.5

Q ss_pred             CCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcc
Q 015729           16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQF   95 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~   95 (401)
                      +..+++++...++...+.   .|.-.+.+.+|++.+++++|.+.   ++++++||.|+.+++.+++++||.|+....  +
T Consensus        52 ~t~am~~~~~aa~~~GDd---~Y~~dpt~~~lE~~~a~l~G~e~---al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~--f  123 (456)
T d1c7ga_          52 GTNAMSDKQWAGMMIGDE---AYAGSENFYHLEKTVKELFGFKH---IVPTHQGRGAENLLSQLAIKPGQYVAGNMY--F  123 (456)
T ss_dssp             SCCCEEHHHHHHTTSCCC---CSSSCHHHHHHHHHHHHHHCCSE---EEEESSHHHHHHHHHHHHCCTTEEEEESSC--C
T ss_pred             CcccchHHHHHHHhccch---hccCCchHHHHHHHHHHHhCCCe---EEECCCHHHHHHHHHHHhcCCCCeEecCcc--h
Confidence            344556666666543332   23335778899999999999987   789999999999999999999998876433  3


Q ss_pred             hHHHHHHHHHcCCcEEEEeCC----------CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcc-ccc---chHHHHH
Q 015729           96 SLLWIDQQQRLNFNVDVVESD----------WGEGAKLDVLASKLAADTAHTIKAICIVHNETATG-VTN---NLSKVRK  161 (401)
Q Consensus        96 ~~~~~~~~~~~g~~~~~v~~~----------~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG-~~~---~l~~i~~  161 (401)
                      .... ......|+..+.+..+          ..+.+|++.+++.+++.+.+.+.++++..++|+.| ...   ++++|.+
T Consensus       124 ~~~~-~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~  202 (456)
T d1c7ga_         124 TTTR-FHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHE  202 (456)
T ss_dssp             HHHH-HHHHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHH
T ss_pred             HHHH-HHHHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHH
Confidence            2221 2234567777665542          23578999999999876545667888888888865 443   4678899


Q ss_pred             HhhhcCCCcEEEEecccccCccee------ccCc-----------ccceEEEecCCCcccCCCcceEEEecHH-HHHHhc
Q 015729          162 LLDEYRHPALFLVDGVSSICAIDF------RMDE-----------WGIDVALTGSQKALSLPTGMGIVCASPK-ALEASK  223 (401)
Q Consensus       162 l~~~~~~~~~li~D~a~~~~~~~~------~~~~-----------~~~di~~~s~~K~l~g~~g~G~l~~~~~-~~~~~~  223 (401)
                      +|++  +|+++|+|+++.++...+      ....           ..+|++++|.+|.++++.| |+++.+++ +.+++.
T Consensus       203 ~a~~--~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~G-G~i~~~~~~l~~~~r  279 (456)
T d1c7ga_         203 MAST--YGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG-GFLCMNDEEMFSAAK  279 (456)
T ss_dssp             HHHH--HTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC-EEEEESCHHHHHHHH
T ss_pred             HHHH--cCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccce-eEEEcCCHHHHHHHH
Confidence            9999  999999999987543211      0110           1369999999999876655 88887654 444433


Q ss_pred             cCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcc
Q 015729          224 TAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEW  303 (401)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  303 (401)
                      ...             ....+....+..+...+.++...+.  +..+ ....++..++.++|.+.|.+.|+.+..+.+. 
T Consensus       280 ~~~-------------~~~~g~~~~g~~~~~~~~a~a~~l~--e~~~-~~~l~~r~~~~~~L~e~L~~~g~~vv~p~g~-  342 (456)
T d1c7ga_         280 ELV-------------VVYEGMPSYGGLAGRDMEAMAIGLR--EAMQ-YEYIEHRVKQVRYLGDKLREAGVPIVEPTGG-  342 (456)
T ss_dssp             HHH-------------HHHTCCTTTTTCCHHHHHHHHHHHH--HHTC-HHHHHHHHHHHHHHHHHHHHTTCCBCSSCCS-
T ss_pred             Hhc-------------cccCCCcccchhhHHHHHHHHHHHH--HhcC-HHHHHHHHHHHHHHHHHHHhccCCcccCCCC-
Confidence            210             0011111122233333333322222  2222 3345566778899999999998888764322 


Q ss_pred             CCceeEEEEc----C----CCCCHHHHHHHHHhhCCeEEccC------CCCC-------CCcEEEEeec-ccCCHHHHHH
Q 015729          304 FSDTVTAVIV----P----SHINSSEIVRRAWQRYNLSLGLG------LNKV-------AGKVFRIGHL-GHLNELQLLG  361 (401)
Q Consensus       304 ~~~~~~~~~~----~----~~~~~~~l~~~L~~~~~i~v~~g------~~~~-------~~~~~Ri~~~-~~~~~~di~~  361 (401)
                         ....+..    |    +.....++...|..+.||...+.      ..+.       ....+|+++. ...|++++|+
T Consensus       343 ---~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~  419 (456)
T d1c7ga_         343 ---HAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDV  419 (456)
T ss_dssp             ---SEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHH
T ss_pred             ---cceeEechhhccCCCcccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHH
Confidence               2222321    1    11234455555554558864321      1111       1234899865 3569999999


Q ss_pred             HHHHHHHHHH
Q 015729          362 CLAGVEMILK  371 (401)
Q Consensus       362 ~~~~i~~~l~  371 (401)
                      ++++|+++.+
T Consensus       420 Vae~i~~v~~  429 (456)
T d1c7ga_         420 VADGIIKLYQ  429 (456)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999999885

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.5e-19  Score=168.85  Aligned_cols=310  Identities=18%  Similarity=0.139  Sum_probs=210.8

Q ss_pred             ChHHHHHHHccCcCC--CC-CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc---------C-CCCCe
Q 015729           20 IPDQVIRAMNRNNED--YR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT---------L-SPGDR   86 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~---------~-~~gd~   86 (401)
                      -+|++.+|+.++...  +. .........++.+.+.++.+.+   .+.++++|++|++.+++..         . ....+
T Consensus        58 ~~p~i~~Av~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~  134 (404)
T d2byla1          58 CHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYH---KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAK  134 (404)
T ss_dssp             TCHHHHHHHHHHHTTCCCCCTTEEESSHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCE
T ss_pred             CCHHHHHHHHHHHhhCCCcccccccchHHHHHHhhhhccccc---ccccccCccccchhHHHHHHHHhhhcccccccccc
Confidence            455666666654322  11 1112233455667777776554   4899999999999987431         1 12346


Q ss_pred             EEEEcCCcchHHHHHHH------HHcC-----CcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc
Q 015729           87 IISFLIGQFSLLWIDQQ------QRLN-----FNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN  155 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~------~~~g-----~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~  155 (401)
                      ++....++++.....+.      ...+     -.+..++.+     |++++++.+.+   +++.+|++....+..|...+
T Consensus       135 i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~-----d~~~l~~~l~~---~~iAaviiEPi~g~~G~~~~  206 (404)
T d2byla1         135 IVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERALQD---PNVAAFMVEPIQGEAGVVVP  206 (404)
T ss_dssp             EEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTT-----CHHHHHHHHTS---TTEEEEEECSSBTTTTSBCC
T ss_pred             ccccCCCccccccceeccCCCcccccCCCCCCCCeeEeccc-----CHHHHHHhcCC---CCeEEEEECCccCCCCCccC
Confidence            77777766654321111      1111     133444433     78999999965   46788999888888887775


Q ss_pred             ----hHHHHHHhhhcCCCcEEEEecccccCcc---eeccCc--ccceEEEecCCCcccCC-CcceEEEecHHHHHHhccC
Q 015729          156 ----LSKVRKLLDEYRHPALFLVDGVSSICAI---DFRMDE--WGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTA  225 (401)
Q Consensus       156 ----l~~i~~l~~~~~~~~~li~D~a~~~~~~---~~~~~~--~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~~  225 (401)
                          +++|.++|++  +|+++|+||++.....   .+..+.  ..+|+++++  |.++++ .++|.+++++++.+.+.+.
T Consensus       207 ~~~~l~~l~~lc~~--~g~llI~DEV~tGfgR~G~~~a~~~~gv~PDi~~~g--K~l~gG~~p~~av~~~~~i~~~~~~~  282 (404)
T d2byla1         207 DPGYLMGVRELCTR--HQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLG--KALSGGLYPVSAVLCDDDIMLTIKPG  282 (404)
T ss_dssp             CTTHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHTTSCTT
T ss_pred             CHHHHHHHHHHHHh--cCeEEEeeccccccccccccchhhhcCCCCCEEEEC--chhhCCCccceeeeechhhhhccCCC
Confidence                8899999999  9999999999863311   122222  337998777  999776 5789999999988766543


Q ss_pred             CCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCC
Q 015729          226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFS  305 (401)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  305 (401)
                      ..                +  .+++.++..+++..++|+.+.+++   ..++..+..+++.+.|+++.-+....  -...
T Consensus       283 ~~----------------~--~T~~gnpl~~aaa~a~L~~i~~~~---l~~~~~~~g~~l~~~l~~l~~~~i~~--vRg~  339 (404)
T d2byla1         283 EH----------------F--STYGGNPLGCRVAIAALEVLEEEN---LAENADKLGIILRNELMKLPSDVVTA--VRGK  339 (404)
T ss_dssp             SS----------------C--CSSTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTSCTTTEEE--EEEE
T ss_pred             CC----------------C--cCCCcCHHHHHHHHHHHHHHHhcC---chhhhhHhhHHHHHHHHhhcccccee--eeec
Confidence            11                1  134567778899999999988764   66677778888999998863333221  1123


Q ss_pred             ceeEEEEcCC--CCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          306 DTVTAVIVPS--HINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       306 ~~~~~~~~~~--~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      +.+..+.+.+  ..+...+...|+++ ||.+.+.    .++.+|+++...+|++|+|+++++|++++++
T Consensus       340 Gl~~~i~~~~~~~~~~~~~~~~l~~~-Gvl~~~~----~~~~i~l~PpL~it~~~id~~~~~l~~al~~  403 (404)
T d2byla1         340 GLLNAIVIKETKDWDAWKVCLRLRDN-GLLAKPT----HGDIIRFAPPLVIKEDELRESIEIINKTILS  403 (404)
T ss_dssp             TTEEEEEECCCSSCCHHHHHHHHHHT-TEECEEE----ETTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ccEEEEEEecCCchhHHHHHHHHHhC-CeEEecC----CCCEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence            4566666633  34667888999877 9987643    2568999888888999999999999999875

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.86  E-value=1.1e-19  Score=163.75  Aligned_cols=284  Identities=14%  Similarity=0.124  Sum_probs=197.7

Q ss_pred             HHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCCh
Q 015729           46 TLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKL  123 (401)
Q Consensus        46 ~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~  123 (401)
                      .|+++++++.|.+.   .+.+++|..|+..++.+++++||+|+++..-|.+.+  +.......|+++.+++..     |+
T Consensus         2 aLE~~la~Leg~~~---a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~-----d~   73 (331)
T d1pffa_           2 ALEGKIAKLEHAEA---CAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA-----VP   73 (331)
T ss_dssp             HHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----ST
T ss_pred             HHHHHHHHHhCCCe---EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc-----ch
Confidence            58899999998765   677899999999999999999999999998776665  456678899999998765     78


Q ss_pred             HHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHh-hhcCCCcEEEEecccccCcceeccCcccceEEEecCCCc
Q 015729          124 DVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLL-DEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKA  202 (401)
Q Consensus       124 ~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~-~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~  202 (401)
                      +.+++++++    ++++|++..+.||+..+.|++++.+++ ++  +|+++++|.+.+.+. .++.-++|+|+++.|.+|+
T Consensus        74 ~~~~~~i~~----~t~~i~~Es~~np~~~v~d~~~~~~~~a~~--~~~~~vVDnT~atp~-~~~pl~~GaDiVv~S~TKy  146 (331)
T d1pffa_          74 GNIEKHLKP----NTRIVYFETPANPTLKVIDIEDAVKQARKQ--KDILVIVDNTFASPI-LTNPLDLGVDIVVHSATKY  146 (331)
T ss_dssp             THHHHTCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHTTS--SSCEEEEECTTTHHH-HCCGGGGTCSEEEEETTTT
T ss_pred             hhHhhhccc----ccceeeeecccccccccccchhhhhhhhcc--cCceEEeeccccccc-cccccccCCCEEEecchhh
Confidence            899998874    569999999999999999999999885 56  899999999865332 2344567899999999999


Q ss_pred             ccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 015729          203 LSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRR  280 (401)
Q Consensus       203 l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~  280 (401)
                      ++|...  .|.++.+++..........                ...+....++..+..+...++-     +..+.++..+
T Consensus       147 ~~Gh~d~~~G~v~~~~~~~~~~~~~~~----------------~~~~G~~l~p~~a~ll~rgl~T-----l~~Rm~~~~~  205 (331)
T d1pffa_         147 INGHTDVVAGLVCSRADIIAKVKSQGI----------------KDITGAIISPHDAWLITRGTLT-----LDMRVKRAAE  205 (331)
T ss_dssp             TSSSSSCCCEEEEECHHHHHHHHHTCC----------------CCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred             cCCCCccccccccccccchhhhhhhhh----------------hhccCCCCCHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence            987543  3888888776554432110                0011334666433333333332     4668899999


Q ss_pred             HHHHHHHHHHHc-CCc-cccC----CCc--------cCCceeEEEEcCCCCCHHHHHHHHHhhCCe---EEccCCC----
Q 015729          281 LGKATRLAVEAW-GLK-NCTQ----KEE--------WFSDTVTAVIVPSHINSSEIVRRAWQRYNL---SLGLGLN----  339 (401)
Q Consensus       281 ~~~~l~~~L~~~-g~~-~~~~----~~~--------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i---~v~~g~~----  339 (401)
                      ++..+.+.|++. .++ +..+    .+.        ...+.++.|.+. +  .++. .++.++.++   .+..|..    
T Consensus       206 nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~-~--~~~~-~~f~d~l~lf~~~~SlG~~~SLi  281 (331)
T d1pffa_         206 NAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-G--LEKA-KKVLDNCHVVSLAVSLGGPESLI  281 (331)
T ss_dssp             HHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-S--HHHH-HHHHHTCSSSEECSSCCSSSCEE
T ss_pred             HHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeec-c--HHHH-HHHHHhCCcceecccCCCCceeE
Confidence            999999999985 332 2111    111        124567888883 2  2333 333344332   2222211    


Q ss_pred             -------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          340 -------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       340 -------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                                         ...++.+|+++..    ||.|.+++.|+++|+.+
T Consensus       282 ~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvGl----E~~~DLi~Dl~~AL~~i  330 (331)
T d1pffa_         282 QHPASMTHAGVPKEEREAAGLTDNLIRLSVGC----ENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             ECHHHHTSTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHTC
T ss_pred             eCccccccccCCHHHHHhcCCCcCeEEEEeee----CCHHHHHHHHHHHHHHh
Confidence                               1134679998654    77777888888777653

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.85  E-value=2.1e-18  Score=158.33  Aligned_cols=289  Identities=14%  Similarity=0.084  Sum_probs=197.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      ......|+++|+++.|.+.   .+++++|..|+..++.+++++||+|++....|.+..  +.......|+++.+++..  
T Consensus        66 nPt~~~LE~~la~LEgg~~---a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~--  140 (398)
T d1qgna_          66 NPTTVVLEEKISALEGAES---TLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA--  140 (398)
T ss_dssp             CHHHHHHHHHHHHHHTCSE---EEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS--
T ss_pred             ChHHHHHHHHHHHHhCCce---EEEecCcchHHHHHHhhcccccccccccccccchhhhhhccccccccccccccccc--
Confidence            4567789999999998765   788899999999999999999999999999777765  445667789988888743  


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                         +.++.++.+..   +++++|++..|.||+..+.|+++|.++|++  +|+++++|.+.+.+. .++.-++|+|+++.|
T Consensus       141 ---~~~~~~~~~~~---~~t~~v~~EspsNP~l~v~Di~~ia~ia~~--~g~~~vVDnT~atP~-~~~Pl~~GaDiVihS  211 (398)
T d1qgna_         141 ---DVGALELALNQ---KKVNLFFTESPTNPFLRCVDIELVSKLCHE--KGALVCIDGTFATPL-NQKALALGADLVLHS  211 (398)
T ss_dssp             ---CHHHHHHHHHH---SCEEEEEEESSCTTTCCCCCHHHHHHHHHH--TTCEEEEECTTTCTT-TCCTTTTTCSEEEEC
T ss_pred             ---chhhhhhhhcc---ccceEEEccCccccccccchHHHHHHHHhh--cCCEEEecceeeccc-cCCchhhCCCEEEEe
Confidence               45555544332   467999999999999999999999999999  999999999865432 234556789999999


Q ss_pred             CCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHH
Q 015729          199 SQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIE  276 (401)
Q Consensus       199 ~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~  276 (401)
                      .+|+++|...  .|.+..+++....+...            ...  .|    ...++..+   ...++-++  -+..+++
T Consensus       212 ~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~------------~~~--~G----~~l~p~~a---~ll~rgl~--TL~lRm~  268 (398)
T d1qgna_         212 ATKFLGGHNDVLAGCISGPLKLVSEIRNL------------HHI--LG----GALNPNAA---YLIIRGMK--TLHLRVQ  268 (398)
T ss_dssp             TTTTTTCSSSCCCEEEEECHHHHHHHHHH------------HHH--HC----CCCCHHHH---HHHHHHGG--GHHHHHH
T ss_pred             chhhcCcccceeehhhcchhhhhhhhhhh------------ccc--CC----CcCCHHHH---HHHHhcch--HHHHHHH
Confidence            9999987643  37888888876655421            011  12    24555322   22223221  2677899


Q ss_pred             HHHHHHHHHHHHHHHc-CCc-cc----cCCCc--------cCCceeEEEEcCCCCCHHHHHHHHHhhCCe---EEccCCC
Q 015729          277 RHRRLGKATRLAVEAW-GLK-NC----TQKEE--------WFSDTVTAVIVPSHINSSEIVRRAWQRYNL---SLGLGLN  339 (401)
Q Consensus       277 ~~~~~~~~l~~~L~~~-g~~-~~----~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i---~v~~g~~  339 (401)
                      +..+++..+.+.|++. .++ +.    ...+.        ...+.++.|.+. + +.++..+ +.++..+   .+..|..
T Consensus       269 ~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~-g-~~~~a~~-f~~~L~l~~~a~SlGg~  345 (398)
T d1qgna_         269 QQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD-G-DLLTTAK-FVDALKIPYIAPSFGGC  345 (398)
T ss_dssp             HHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES-S-CHHHHHH-HHHHCSSSEECSCCCSS
T ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeec-C-CHHHHHH-HHHcCCcceeeeCCCCC
Confidence            9999999999999874 322 11    11111        112457778773 3 3333222 2233232   2222211


Q ss_pred             -----------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          340 -----------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       340 -----------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                                             ...++.+|||+..    ||.|.+++.|+.+|+.+
T Consensus       346 ~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl----Ed~eDLi~Dl~~AL~~i  398 (398)
T d1qgna_         346 ESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV----EDFDDLKADILQALDSI  398 (398)
T ss_dssp             SCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS----SCHHHHHHHHHHHHHHC
T ss_pred             cceeeCcchhccccCCHHHHHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHhcC
Confidence                                   0134679998654    77777888888887653

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.85  E-value=2.6e-19  Score=163.70  Aligned_cols=213  Identities=15%  Similarity=0.117  Sum_probs=160.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      ......++++|+.+-|.+.   .+.+++|..|+. ++.+++++||+|++....|.+..  +.......|+++.+++..  
T Consensus        48 nPt~~~le~~la~LE~~~~---a~~fsSGMaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~--  121 (380)
T d1ibja_          48 NPTRDALESLLAKLDKADR---AFCFTSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT--  121 (380)
T ss_dssp             CHHHHHHHHHHHHHHTCSE---EEEESSHHHHHH-HHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT--
T ss_pred             ChHHHHHHHHHHHHcCCce---EEehhhHHHHHH-HHHHhhCCCCEEEEEecccccccchhhhhhccccccccccCcc--
Confidence            3557799999999998765   677888999986 56788999999999998766665  345566689998888754  


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                         +++++++++++    ++++|++..|.||+..+.|+++|.++|++  +|+++++|.+.+.+. ....-++|+|+++.|
T Consensus       122 ---~~~~~~~ai~~----~t~li~~EtpsNP~l~v~Di~~i~~iA~~--~g~~~vVDnT~atP~-~~~Pl~~GaDiVvhS  191 (380)
T d1ibja_         122 ---KLDEVAAAIGP----QTKLVWLESPTNPRQQISDIRKISEMAHA--QGALVLVDNSIMSPV-LSRPLELGADIVMHS  191 (380)
T ss_dssp             ---SHHHHHHHCCS----SEEEEEECSSCTTTCCCCCHHHHHHHHHT--TTCEEEEECTTTCTT-TCCGGGTTCSEEEEE
T ss_pred             ---hHHHHHHHhcc----CccEEEeccccccccccccHHHHHHHHHH--cCCeEEeeccccccc-cccccccCCCEEEec
Confidence               78999998874    67999999999999999999999999999  999999999976433 234446789999999


Q ss_pred             CCCcccCCCc--ceEEEecHH-HHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHH
Q 015729          199 SQKALSLPTG--MGIVCASPK-ALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI  275 (401)
Q Consensus       199 ~~K~l~g~~g--~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  275 (401)
                      .+|+++|...  .|.++.+++ +.+++...             . ...|    .+.++..+.-+...++     -+..++
T Consensus       192 ~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~-------------~-~~~G----~~l~p~~a~ll~rgl~-----Tl~lRm  248 (380)
T d1ibja_         192 ATKFIAGHSDVMAGVLAVKGEKLAKEVYFL-------------Q-NSEG----SGLAPFDCWLCLRGIK-----TMALRI  248 (380)
T ss_dssp             TTTTTTCSSCCCCEEEEECSHHHHHHHHHH-------------H-HHTT----CBCCHHHHHHHHHHHT-----THHHHH
T ss_pred             ccceeccccCccccccccchhhHHHHHHhh-------------c-cccC----CcCCHHHHHHHHhcch-----hhhhhH
Confidence            9999987543  377777754 33433211             1 1112    2455543332222222     367789


Q ss_pred             HHHHHHHHHHHHHHHHc
Q 015729          276 ERHRRLGKATRLAVEAW  292 (401)
Q Consensus       276 ~~~~~~~~~l~~~L~~~  292 (401)
                      ++..+++..+.+.|++.
T Consensus       249 ~~~~~nA~~lA~~L~~h  265 (380)
T d1ibja_         249 EKQQENARKIAMYLSSH  265 (380)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            99999999999999974

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.8e-19  Score=169.59  Aligned_cols=322  Identities=15%  Similarity=0.097  Sum_probs=213.4

Q ss_pred             hHHHHHHHccCcCC--C--CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccC-------CCCCeEEE
Q 015729           21 PDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTL-------SPGDRIIS   89 (401)
Q Consensus        21 ~~~v~~a~~~~~~~--~--~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~-------~~gd~vl~   89 (401)
                      +|++.+++.++...  +  ......+...++.+++.+...... ..+.++++|++|++.++....       .+..+|+.
T Consensus        61 ~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~  139 (429)
T d1s0aa_          61 HPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPL-ECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLT  139 (429)
T ss_dssp             CHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTC-CEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred             cHHHHHHHHHHHHhcCCcccCCccchHHHHHHHHHHhhhccCc-ceeeeccccccchhhhhhhhhheeecccccccEEEE
Confidence            46666665553321  1  112223445566777777766543 348899999999998874321       34468999


Q ss_pred             EcCCcchHHHHHHHHHcC-------------CcEEEEeCCCC---C---CCChHHHHHHHhccCCCCceEEEEEecC-CC
Q 015729           90 FLIGQFSLLWIDQQQRLN-------------FNVDVVESDWG---E---GAKLDVLASKLAADTAHTIKAICIVHNE-TA  149 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~---~---~~d~~~le~~~~~~~~~~~~~i~~~~~~-n~  149 (401)
                      ...+||+.......- .+             ......+....   .   .-+++.+++.+.+.. +++.++++.... +.
T Consensus       140 ~~~~yHG~t~~a~~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iaavivEPi~~~~  217 (429)
T d1s0aa_         140 FRNGYHGDTFGAMSV-CDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR-HEIAAVIIEPIVQGA  217 (429)
T ss_dssp             ETTCCCCSSHHHHTT-SCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHT-TTEEEEEECSSEECT
T ss_pred             ecCCccccchhhhhh-cCCccccccccCccccccccccccccccccccchhhhhhhhhhhhhcC-CccceeeecceeccC
Confidence            988888765322111 11             11222222111   1   124566666665544 578888888664 44


Q ss_pred             ccccc-c---hHHHHHHhhhcCCCcEEEEecccccCcc---e--eccCcccceEEEecCCCcccCC-CcceEEEecHHHH
Q 015729          150 TGVTN-N---LSKVRKLLDEYRHPALFLVDGVSSICAI---D--FRMDEWGIDVALTGSQKALSLP-TGMGIVCASPKAL  219 (401)
Q Consensus       150 tG~~~-~---l~~i~~l~~~~~~~~~li~D~a~~~~~~---~--~~~~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~  219 (401)
                      .|... |   +++|.++|++  +|+++|.||++.....   .  +......+|+++++  |.++++ .++|.+++++++.
T Consensus       218 gg~~~~~~~fl~~lr~lc~~--~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~g--K~l~gG~~p~~av~~~~~i~  293 (429)
T d1s0aa_         218 GGMRMYHPEWLKRIRKICDR--EGILLIADEIATGFGRTGKLFACEHAEIAPDILCLG--KALTGGTMTLSATLTTREVA  293 (429)
T ss_dssp             TTCEEBCTHHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTSSSCCEEEEECHHHH
T ss_pred             CCccCCCHHHHHHHHHHHHH--cCcceehhhccccccccccccccccceecccccccc--cccccccccccchhhHHHHH
Confidence            55544 3   7889999999  9999999999874311   1  12223357999887  888554 6789999999998


Q ss_pred             HHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCcccc
Q 015729          220 EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCT  298 (401)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~  298 (401)
                      +.+.......+.+           +  .+++.++..+++..++|+.+.++   +..++..+..+++++.|+++ ..+.+.
T Consensus       294 ~~~~~~~~~~~~~-----------~--~T~~gnp~~~aaa~a~L~~i~~~---~~~~~~~~~g~~l~~~L~~l~~~~~v~  357 (429)
T d1s0aa_         294 ETISNGEAGCFMH-----------G--PTFMGNPLACAAANASLAILESG---DWQQQVADIEVQLREQLAPARDAEMVA  357 (429)
T ss_dssp             HHHHTSTTSSCSC-----------C--CTTTTCHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHGGGGGCTTEE
T ss_pred             hccCCCCCcceee-----------c--CCCCCCcccchhhhccccccccc---cccchhhHHHHHHHHHHHHhccCCceE
Confidence            8775432211111           1  14456677888999999988775   46778888889999999876 333322


Q ss_pred             CCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          299 QKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                        +....+.+..+++....+...+.+.|+++ |+.+.+.     ++.+|+.+...+|++|||+++++|+++++|.
T Consensus       358 --~vrg~Gl~~~~e~~~~~~~~~~~~~~~~~-Gl~~~~~-----g~~i~~~Ppl~it~~eid~~~~~l~~al~e~  424 (429)
T d1s0aa_         358 --DVRVLGAIGVVETTHPVNMAALQKFFVEQ-GVWIRPF-----GKLIYLMPPYIILPQQLQRLTAAVNRAVQDE  424 (429)
T ss_dssp             --EEEEETTEEEEEESSCBCHHHHHHHHHHT-TEECCCB-----TTEEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred             --EEeecccEEEEEecCcccHHHHHHHHHHC-CcEEEec-----CCEEEEeCCcCCCHHHHHHHHHHHHHHHHhh
Confidence              12234567778886666788899999877 9987643     5789998877889999999999999998764

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=2e-19  Score=169.60  Aligned_cols=323  Identities=16%  Similarity=0.090  Sum_probs=206.7

Q ss_pred             ChHHHHHHHccCcCC--C--CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCC
Q 015729           20 IPDQVIRAMNRNNED--Y--RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIG   93 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~--~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~   93 (401)
                      -+|++.+++.++...  +  ......+...++.+.+.+.+.......+.++++|++|++.+++.  .....++|+....+
T Consensus        57 ~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~  136 (425)
T d1sffa_          57 LHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGA  136 (425)
T ss_dssp             TCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTC
T ss_pred             CcHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhhcccceEeecCC
Confidence            446666666654332  1  11222345567888888888655445689999999999998843  23345688888888


Q ss_pred             cchHHHHHHHHHcC-------------CcEEEEeCCCC--CCCC---hHHHHHHHh-ccCCCCceEEEEEecCCCccccc
Q 015729           94 QFSLLWIDQQQRLN-------------FNVDVVESDWG--EGAK---LDVLASKLA-ADTAHTIKAICIVHNETATGVTN  154 (401)
Q Consensus        94 ~~~~~~~~~~~~~g-------------~~~~~v~~~~~--~~~d---~~~le~~~~-~~~~~~~~~i~~~~~~n~tG~~~  154 (401)
                      ||+.......- .|             ......+.+..  ....   ....++.+. ......+.++++.......|...
T Consensus       137 yHG~t~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~  215 (425)
T d1sffa_         137 YHGRTHYTLAL-TGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYA  215 (425)
T ss_dssp             CCCSSHHHHHH-SSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCB
T ss_pred             CcCccccchhh-cCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCccc
Confidence            88866322221 11             11112221111  0110   011112111 11113578899998888888776


Q ss_pred             c----hHHHHHHhhhcCCCcEEEEeccccc-Ccc--e--eccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccC
Q 015729          155 N----LSKVRKLLDEYRHPALFLVDGVSSI-CAI--D--FRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTA  225 (401)
Q Consensus       155 ~----l~~i~~l~~~~~~~~~li~D~a~~~-~~~--~--~~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~  225 (401)
                      +    ++.|.++|++  +|+++|+||++.. |-.  .  .+.....+|+++++  |.++++.++|.+++++++.+.+...
T Consensus       216 ~~~~~l~~l~~lc~~--~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~~g--K~l~gG~P~~av~~~~~i~~~~~~~  291 (425)
T d1sffa_         216 SSPAFMQRLRALCDE--HGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFA--KSIAGGFPLAGVTGRAEVMDAVAPG  291 (425)
T ss_dssp             CCHHHHHHHHHHHHH--HTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEEC--GGGGTSSCCEEEEEEHHHHTTSCTT
T ss_pred             CCHHHHHHHHHHHHH--cCceEEeccccccCCCcchhhHHHhcCCCccceecc--cccCCCcceEEEEEcHHHHHhhCCC
Confidence            4    7889999999  9999999999874 211  1  12223457988887  9998777899999999988766543


Q ss_pred             CCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCcc
Q 015729          226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEW  303 (401)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~  303 (401)
                      ..                ++  +++.++..+++..++|+.+.+..   ..++..+..+++.+.|+++  ..+....-  .
T Consensus       292 ~~----------------~~--T~~gnpl~~aaa~a~L~~i~~~~---~~~~~~~~g~~l~~~l~~~~~~~~~v~~v--r  348 (425)
T d1sffa_         292 GL----------------GG--TYAGNPIACVAALEVLKVFEQEN---LLQKANDLGQKLKDGLLAIAEKHPEIGDV--R  348 (425)
T ss_dssp             SB----------------CC--SSSSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHTCTTEEEE--E
T ss_pred             CC----------------CC--CCCcCHHHHHHHHHHHHHHHHhh---hhhhhhhhhhhhhhhhhhhHhhCCceEEE--E
Confidence            11                22  34566778899999999988765   5566666677777776664  33332211  1


Q ss_pred             CCceeEEEEcCC----CC-C---HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          304 FSDTVTAVIVPS----HI-N---SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       304 ~~~~~~~~~~~~----~~-~---~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ..+.+..+.+.+    .. +   ...+.+.|+++ ||.+.+...  .++.+|+++...+|++|||+++++++++++++
T Consensus       349 g~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~-Gvl~~~~g~--~~n~i~~~PpL~it~~eid~~l~~l~~al~ei  423 (425)
T d1sffa_         349 GLGAMIAIELFEDGDHNKPDAKLTAEIVARARDK-GLILLSCGP--YYNVLRILVPLTIEDAQIRQGLEIISQCFDEA  423 (425)
T ss_dssp             EETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHT-TEECEEEST--TSCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccEEEEEEeccCccCCccHHHHHHHHHHHHHC-CCEEeccCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            234566666521    11 1   23577778776 988765432  25789999888899999999999999999876

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=4.7e-19  Score=162.83  Aligned_cols=294  Identities=11%  Similarity=0.121  Sum_probs=203.7

Q ss_pred             cHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCC
Q 015729           39 AVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESD  116 (401)
Q Consensus        39 ~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~  116 (401)
                      ........+++.++++-|.+.   .+.+++|..|+..++.+++++||+|++...-|.+..  +.......|+++..++..
T Consensus        55 ~~nPt~~~le~~la~LEg~~~---a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~  131 (391)
T d1cl1a_          55 RGTLTHFSLQQAMCELEGGAG---CVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL  131 (391)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT
T ss_pred             CCChhHHHHHHHHHHHhCCcc---EEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccccccCc
Confidence            335667899999999998765   788899999999999999999999999998777665  445567789999988754


Q ss_pred             CCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEE
Q 015729          117 WGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVAL  196 (401)
Q Consensus       117 ~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~  196 (401)
                           |.+++++++++    ++++|++..|.||+..+.|+++|.++|+++.+|+++++|.+.+.+. .++.-++|+|+++
T Consensus       132 -----d~~~~~~~i~~----~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~-~~~Pl~~GaDivv  201 (391)
T d1cl1a_         132 -----IGADIVKHLQP----NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGV-LFKALDFGIDVSI  201 (391)
T ss_dssp             -----CGGGGGGTCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTT-SSCGGGGTCSEEE
T ss_pred             -----ccccccccccc----ccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchh-hhcccccccceEE
Confidence                 67888887774    6799999999999999999999999998755799999999976533 2344567899999


Q ss_pred             ecCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHH
Q 015729          197 TGSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENV  274 (401)
Q Consensus       197 ~s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~  274 (401)
                      .|.+|+++|...  .|.++.+++...++...              ....|    .+.++..+.   ..++-++  -+.-+
T Consensus       202 hS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~--------------~~~~G----~~~~p~~a~---ll~rgl~--TL~lR  258 (391)
T d1cl1a_         202 QAATKYLVGHSDAMIGTAVCNARCWEQLREN--------------AYLMG----QMVDADTAY---ITSRGLR--TLGVR  258 (391)
T ss_dssp             EETTTTTTCSSSCCCEEEEECTTTHHHHHHH--------------HHHTT----CCCCHHHHH---HHHHHHT--THHHH
T ss_pred             eecchhccccccccccceeccccccccchhh--------------hhccc----ccCCchhhh---hhhccch--hHHHH
Confidence            999999987543  38888888766554321              11112    245553222   2222221  25678


Q ss_pred             HHHHHHHHHHHHHHHHHc-CCcc-ccC----CCc--------cCCceeEEEEcCCCCCHHHHHHHHHhhCCe---EEccC
Q 015729          275 IERHRRLGKATRLAVEAW-GLKN-CTQ----KEE--------WFSDTVTAVIVPSHINSSEIVRRAWQRYNL---SLGLG  337 (401)
Q Consensus       275 ~~~~~~~~~~l~~~L~~~-g~~~-~~~----~~~--------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i---~v~~g  337 (401)
                      +++..+++..+.+.|++. .+.. ..+    .+.        ...+.++.|.+....+.+++.+.+ ++..+   .+..|
T Consensus       259 ~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e~~~~f~-d~L~l~~~a~SlG  337 (391)
T d1cl1a_         259 LRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYL-DNFSLFSMAYSWG  337 (391)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHH-TTCSSCBCCSCCC
T ss_pred             HHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCcceeeeecCCCCHHHHHHHH-HcCCcceEeeCCC
Confidence            889999999999999874 2221 111    000        112346677775444555655544 33232   22222


Q ss_pred             CC---------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          338 LN---------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       338 ~~---------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ..                     ...++.+|+|+..    ||+|.+++.|+++|+++
T Consensus       338 ~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGl----Ed~eDLi~Dl~~AL~~i  390 (391)
T d1cl1a_         338 GYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGL----EDVDDLIADLDAGFARI  390 (391)
T ss_dssp             SSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECCS----SCHHHHHHHHHHHHHHT
T ss_pred             CCccceeCCcccccccCCchHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHHhh
Confidence            11                     1124569998654    78888888888887654

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=2.8e-18  Score=156.84  Aligned_cols=287  Identities=17%  Similarity=0.079  Sum_probs=195.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      ......++++|+++.|.+.   .+.+++|..|+..++.+++++||.|++....|.+..  +.......|+++.+++..  
T Consensus        49 nPt~~~le~~la~LEgg~~---a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~--  123 (384)
T d1cs1a_          49 NPTRDVVQRALAELEGGAG---AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG--  123 (384)
T ss_dssp             CHHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT--
T ss_pred             CHHHHHHHHHHHHHhCCCc---eEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhcccccccccccCC--
Confidence            4667899999999998765   788899999999999999999999999988776665  445666678788777643  


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                         |++++++++.+    ++++|++..|.||+..+.|+++|.++|++  +|+++++|.+.+.+. .++.-++|+|+++.|
T Consensus       124 ---d~~~~~~~~~~----~t~~v~~EspsNP~l~v~Di~~i~~ia~~--~g~~~vVDNT~atP~-~~~Pl~~GaDiVvhS  193 (384)
T d1cs1a_         124 ---DEQALRAALAE----KPKLVLVESPSNPLLRVVDIAKICHLARE--VGAVSVVDNTFLSPA-LQNPLALGADLVLHS  193 (384)
T ss_dssp             ---CHHHHHHHHHT----CCSEEEEECSCTTTCCCCCHHHHHHHHHH--TTCEEEEECTTTCTT-TCCGGGGTCSEEEEE
T ss_pred             ---CHHHHHhhccc----cccEEEEeccccccceeccHHHHhhhhhh--cCcEEEEeccccCcc-cccccccCCCEEEEc
Confidence               78999999985    56999999999999999999999999999  999999999975442 234456789999999


Q ss_pred             CCCcccCCCc--ceEEEecHHH-HHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHH
Q 015729          199 SQKALSLPTG--MGIVCASPKA-LEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI  275 (401)
Q Consensus       199 ~~K~l~g~~g--~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  275 (401)
                      .+|+++|...  .|+++.+++. .+.+...              ....|.    ..++..+.   ..++-++  -+.-++
T Consensus       194 ~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~--------------~~~~G~----~~~p~~a~---ll~rgL~--TL~lRm  250 (384)
T d1cs1a_         194 CTKYLNGHSDVVAGVVIAKDPDVVTELAWW--------------ANNIGV----TGGAFDSY---LLLRGLR--TLVPRM  250 (384)
T ss_dssp             TTTTTTCSSCCCCEEEEESSHHHHHHHHHH--------------HHHHTC----BCCHHHHH---HHHHHHT--THHHHH
T ss_pred             cccccccCCCcccccccCCchhhhhhhhhh--------------hhhhhh----ccccccHH---HHhhccc--hhHHHH
Confidence            9999987543  3777775543 3333211              011122    35553322   2233222  257788


Q ss_pred             HHHHHHHHHHHHHHHHc-CCc-cc----cCCCc--------cCCceeEEEEcCCCCCHHHHHHHHHhhCCe---EEccCC
Q 015729          276 ERHRRLGKATRLAVEAW-GLK-NC----TQKEE--------WFSDTVTAVIVPSHINSSEIVRRAWQRYNL---SLGLGL  338 (401)
Q Consensus       276 ~~~~~~~~~l~~~L~~~-g~~-~~----~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i---~v~~g~  338 (401)
                      ++..+++..+.+.|++. .++ +.    ...+.        ...+.++.|.+..  +.++..+.+ ++..+   .+..|.
T Consensus       251 ~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~--~~~~a~~f~-~~L~l~~~a~SlGg  327 (384)
T d1cs1a_         251 ELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG--DEQTLRRFL-GGLSLFTLAESLGG  327 (384)
T ss_dssp             HHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--CHHHHHHHH-HTCSSSEEBSCCCS
T ss_pred             HHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecc--hHHHHHHHH-HhCCcceeccccCC
Confidence            99999999999999874 221 11    11111        1135577788743  333333333 33222   222221


Q ss_pred             C-----------------------CCCCcEEEEeecccCCHHHHHHHHHHHHHHHHh
Q 015729          339 N-----------------------KVAGKVFRIGHLGHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       339 ~-----------------------~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~  372 (401)
                      .                       ...++.+|+++..    ||+|.+++-|+.+|+.
T Consensus       328 ~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl----Ed~eDLi~Dl~~AL~a  380 (384)
T d1cs1a_         328 VESLISHAATMTHAGMAPEARAAAGISETLLRISTGI----EDGEDLIADLENGFRA  380 (384)
T ss_dssp             SSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred             ccceeccccccccccCCHHHHHhcCCCcCeEEEEecc----CCHHHHHHHHHHHHHH
Confidence            1                       1134679998654    7777777777777654

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.84  E-value=2.8e-19  Score=168.48  Aligned_cols=313  Identities=16%  Similarity=0.117  Sum_probs=201.0

Q ss_pred             ChHHHHHHHccCcCCCC-CccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcch
Q 015729           20 IPDQVIRAMNRNNEDYR-SPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQFS   96 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~   96 (401)
                      -+|+|++++++...... .........++.+.+.+..+..  +.+.|+++|++|++.++..  .....++|+....+||+
T Consensus        69 ~hp~i~~ai~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG  146 (427)
T d2gsaa_          69 AHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSI--EMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHG  146 (427)
T ss_dssp             TCHHHHHHHHHHHTTCSCCSSCCHHHHHHHHHHHHHSTTC--SEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC
T ss_pred             CcHHHHHHHHHHHHhcCccccchhHHHHHHHHHHhhCCcc--ccccccCCcHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence            35677777766443221 1112233445666777765433  3588999999999999853  23455788998888887


Q ss_pred             HHHH------HHHHHcCC------------cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc---
Q 015729           97 LLWI------DQQQRLNF------------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN---  155 (401)
Q Consensus        97 ~~~~------~~~~~~g~------------~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~---  155 (401)
                      ....      .-....+.            +...++.     -|++++|+.+++.. .++.+|++.......|.+.+   
T Consensus       147 ~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~~le~~~~~~~-~~iaavi~Epi~g~~G~~~~~~~  220 (427)
T d2gsaa_         147 HADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-----NDLEAVKALFAENP-GEIAGVILEPIVGNSGFIVPDAG  220 (427)
T ss_dssp             SCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECT-----TCHHHHHHHHTTST-TTEEEEEECSSBCSSSCBCCCTT
T ss_pred             CcceeeeecCCcccccCCCCCCCCcccCccceeccCc-----chHHHHHHHHHhCC-CCeEEEEEcCCcCCCCCccCCHH
Confidence            5311      00111111            2222221     28999999998765 57889999988888898887   


Q ss_pred             -hHHHHHHhhhcCCCcEEEEecccccCcc--ee--ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCcc
Q 015729          156 -LSKVRKLLDEYRHPALFLVDGVSSICAI--DF--RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRV  230 (401)
Q Consensus       156 -l~~i~~l~~~~~~~~~li~D~a~~~~~~--~~--~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~  230 (401)
                       ++.|.++|++  +|+++|+||++..+..  .+  +.....+|+++++  |.++++..+|.+++++++.+.+.+...  .
T Consensus       221 ~l~~l~~lc~~--~~~llI~DEv~tG~r~g~~~~~~~~gi~PDi~~~g--K~lggG~p~~a~~~~~~i~~~~~~~~~--~  294 (427)
T d2gsaa_         221 FLEGLREITLE--HDALLVFDEVMTGFRIAYGGVQEKFGVTPDLTTLG--KIIGGGLPVGAYGGKREIMQLVAPAGP--M  294 (427)
T ss_dssp             HHHHHHHHHHH--TTCEEEEECTTTBTTTBTTCHHHHTTCCCSEEEEC--GGGGTTSCCEEEEECHHHHTTBTTTSS--B
T ss_pred             HHHHHHHHHHH--hceeeeeccccccceecccchHHhcCCCHHHHhhh--hccCCCcceeeeeehHHHHHHhcccCC--C
Confidence             8999999999  9999999999974311  01  1122358999988  888777777889999999887654211  0


Q ss_pred             ccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc----CCccccCCCccCCc
Q 015729          231 FFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW----GLKNCTQKEEWFSD  306 (401)
Q Consensus       231 ~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~  306 (401)
                      .           .+  .+++.++..+++..++++.+.+++   ..++..++.+++.+.|+++    +......    ...
T Consensus       295 ~-----------~~--~T~~gnpla~AAala~Le~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~----~~g  354 (427)
T d2gsaa_         295 Y-----------QA--GTLSGNPLAMTAGIKTLELLRQPG---TYEYLDQITKRLSDGLLAIAQETGHAACGG----QVS  354 (427)
T ss_dssp             C-----------CC--CTTTTCHHHHHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHHHHHHHHTTCCCEEE----EET
T ss_pred             c-----------CC--CCCCCCchhhHHHHHhhHHhhhhh---HHhhhhHHHHHHHHHHHHHHhhcCCCcEEc----ccC
Confidence            1           11  144677788888999999887765   5566666677777766653    4333221    111


Q ss_pred             eeEEEEcCCC-C---------CH---HHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          307 TVTAVIVPSH-I---------NS---SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       307 ~~~~~~~~~~-~---------~~---~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      .++.+.+.+. +         +.   ..+.+.|.++ ||.+.++..   ..+  + +...+|++|||+++++++++++++
T Consensus       355 gm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~-Gv~l~p~~~---~~~--~-~~l~~Te~dId~~l~al~~al~~L  427 (427)
T d2gsaa_         355 GMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ-GIYLAPSQF---EAG--F-TSLAHTEEDIDATLAAARTVMSAL  427 (427)
T ss_dssp             TEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSSTT---SCE--E-CCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred             CeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHC-CEEECCCCC---cce--e-CCCCCCHHHHHHHHHHHHHHHHhC
Confidence            2334443111 1         11   2456667766 999876432   111  2 345689999999999999999764

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.83  E-value=1.9e-19  Score=163.20  Aligned_cols=315  Identities=13%  Similarity=0.074  Sum_probs=189.8

Q ss_pred             ChHHHHHHHccCcCCC-CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH
Q 015729           20 IPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL   98 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~   98 (401)
                      .+|+|++|+.+....+ .++...+..+++|+++++++|.++.+ +++|+|||+|+..++..+..+++++++....+++..
T Consensus        12 ~~P~v~eAl~~~~~~~~~~y~~~~~~~~lr~~ia~~~g~~~~~-v~~tsggtean~~a~~~~~~~~~~~~~~~~~~~~~~   90 (340)
T d1svva_          12 MHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDAD-VHFISGGTQTNLIACSLALRPWEAVIATQLGHISTH   90 (340)
T ss_dssp             CCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTSE-EEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHS
T ss_pred             CCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhCCCcce-EEEcCCHHHHHHHHHHHHhhhccccccccccceeee
Confidence            3678999998855443 23444577889999999999998654 999999999999999999999999999988777654


Q ss_pred             HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccC--CCCceEEEEEecCCCcccccc---hHHHHHHhhhcCCCcEEE
Q 015729           99 WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADT--AHTIKAICIVHNETATGVTNN---LSKVRKLLDEYRHPALFL  173 (401)
Q Consensus        99 ~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~--~~~~~~i~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~li  173 (401)
                      ........+.....+..... ..+.+..........  ......++++...+..|.+.+   +..+...|++  ++.+++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~  167 (340)
T d1svva_          91 ETGAIEATGHKVVTAPCPDG-KLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKE--HGLYLF  167 (340)
T ss_dssp             STTHHHHTTCCEEEECCTTS-CCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHH--HTCEEE
T ss_pred             ecccccccceeeeecccccc-cccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhccccc--ccceee
Confidence            21222334444444443333 234444444333211  012334455555555666654   5557788888  999999


Q ss_pred             EecccccCcceeccC-------cccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCC
Q 015729          174 VDGVSSICAIDFRMD-------EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTF  246 (401)
Q Consensus       174 ~D~a~~~~~~~~~~~-------~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  246 (401)
                      +|+++..+....+..       ....++...+..|... ..+.++..............             .....+  
T Consensus       168 ~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------~~~~~~--  231 (340)
T d1svva_         168 LDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGG-MFGEALIILNDALKPNARHL-------------IKQRGA--  231 (340)
T ss_dssp             EECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTC-SSCEEEEECSGGGCTTHHHH-------------HHHTTC--
T ss_pred             eeccceeeeecccccccccccccccceeeecCCccccc-cccccccccchhhhhhhhhh-------------cccccC--
Confidence            999986443332221       1234567777777553 33334444433321111100             001111  


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHH
Q 015729          247 WPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRA  326 (401)
Q Consensus       247 ~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  326 (401)
                       ..+...   ++..+++......+.....++...+++++.+.|+++|+++..+.   ..+ ++++.++     .+....|
T Consensus       232 -~~~~~~---~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~---~~~-~v~~~~~-----~~~~~~l  298 (340)
T d1svva_         232 -LMAKGW---LLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPS---ASN-QLFPILE-----NTMIAEL  298 (340)
T ss_dssp             -CCTTTH---HHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCC---SSS-EECBEEE-----HHHHHHH
T ss_pred             -ccchhh---HHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcCCCeeecCC---Cce-EEEEeCC-----HHHHHHH
Confidence             111112   22223333333334566777888888999999999999887543   233 4445553     3555666


Q ss_pred             HhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHH
Q 015729          327 WQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEM  368 (401)
Q Consensus       327 ~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~  368 (401)
                      .++ ++...........+.+|+++..++|++|||+++++|++
T Consensus       299 ~~~-~~~~~~~~~~~~~~~vR~s~~~~~t~edid~~l~~l~~  339 (340)
T d1svva_         299 NND-FDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKR  339 (340)
T ss_dssp             TTT-EECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             HHh-hhhhcccccCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence            655 32211111222356799998888999999999999986

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.83  E-value=8.2e-18  Score=154.63  Aligned_cols=218  Identities=14%  Similarity=0.125  Sum_probs=166.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCC
Q 015729           40 VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDW  117 (401)
Q Consensus        40 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~  117 (401)
                      .......+++.|+++.|.+.   .+.+++|..|+..++.+++++||.|++.+..|.+..  +.......|+++.+++.. 
T Consensus        57 ~nPT~~~le~~la~LEg~~~---a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~-  132 (394)
T d1e5ea_          57 GNPTVSNLEGKIAFLEKTEA---CVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-  132 (394)
T ss_dssp             CCHHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-
T ss_pred             CCHHHHHHHHHHHHHhCCcc---eeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccceeeeccCCC-
Confidence            34667789999999998765   677889999999999999999999999998766654  455778899999999865 


Q ss_pred             CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEe
Q 015729          118 GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALT  197 (401)
Q Consensus       118 ~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~  197 (401)
                          |++++++++++    ++++|++..|.||+..+.|++++.+.++++ +|+++++|.+.+.+. .++.-++|+|+++.
T Consensus       133 ----d~~~~~~~i~~----~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~-~g~~vvvDnT~atP~-~~~Pl~~GaDiVvh  202 (394)
T d1e5ea_         133 ----IPGEVKKHMKP----NTKIVYFETPANPTLKIIDMERVCKDAHSQ-EGVLVIADNTFCSPM-ITNPVDFGVDVVVH  202 (394)
T ss_dssp             ----STTHHHHHCCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHTS-TTCEEEEECTTTCTT-TCCGGGGTCSEEEE
T ss_pred             ----CHHHHHHhhcc----cccEEEEeccCCcceeeehhhhhhhccccc-cCeEEEecCcccCcc-cCCchhcCCCEEEe
Confidence                78899999884    569999999999999999999998866541 789999999865432 23455678999999


Q ss_pred             cCCCcccCCCc--ceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHH
Q 015729          198 GSQKALSLPTG--MGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVI  275 (401)
Q Consensus       198 s~~K~l~g~~g--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  275 (401)
                      |.+|+++|..-  .|.++++++.....+....                ...+..++++..+.-+...++     -+.-++
T Consensus       203 S~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~----------------~~~~G~~lsp~~a~ll~rgl~-----TL~lRm  261 (394)
T d1e5ea_         203 SATKYINGHTDVVAGLICGKADLLQQIRMVGI----------------KDITGSVISPHDAWLITRGLS-----TLNIRM  261 (394)
T ss_dssp             ETTTTTTCSSCCCCEEEEECHHHHHHHHHTCC----------------CCCCCCCCCHHHHHHHHHHHT-----THHHHH
T ss_pred             chhhhcCCCcccccccccchhhHHHHHHHHHH----------------HHhhCCCCChHHHHHHHhhch-----hHHHHH
Confidence            99999987543  3888888887665432110                001233566643332222222     267789


Q ss_pred             HHHHHHHHHHHHHHHHc
Q 015729          276 ERHRRLGKATRLAVEAW  292 (401)
Q Consensus       276 ~~~~~~~~~l~~~L~~~  292 (401)
                      ++..+++..+.+.|++.
T Consensus       262 ~r~~~nA~~lA~~L~~h  278 (394)
T d1e5ea_         262 KAESENAMKVAEYLKSH  278 (394)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999999985

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=1.9e-18  Score=160.43  Aligned_cols=340  Identities=13%  Similarity=0.054  Sum_probs=229.5

Q ss_pred             ccccCCCcCChHHHHHHHccCc--CCC--CC----ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-C
Q 015729           11 HLFVPGPVHIPDQVIRAMNRNN--EDY--RS----PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-L   81 (401)
Q Consensus        11 ~~~~~~p~~~~~~v~~a~~~~~--~~~--~~----~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~   81 (401)
                      +-.+.+....++.+.+.+.+..  ..+  +.    .+..+.+-++++.|+++.|.+... +....|++...+.++.+. .
T Consensus        69 ig~G~~~~~~p~~i~~~~~~~~~~t~ytPyqpE~sQG~Lq~l~e~q~~l~eltGmd~~n-~s~~~ga~a~~~~~~~~~~~  147 (437)
T d1wyua1          69 LGGGVRSHHVPPVVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIAN-ASMYDGATALAEGVLLALRE  147 (437)
T ss_dssp             CCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEEC-SCBSSHHHHHHHHHHHHHHH
T ss_pred             cCcccCCceeCHHHHHHHhChhhhhhCCCcchHHHHHHHHHHHHHHHHHHHhhCCCccc-cCchHHHHHHHHHHHHHHhh
Confidence            4444556677776644333311  111  22    234566779999999999998532 455667776666554332 3


Q ss_pred             CCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHH
Q 015729           82 SPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKV  159 (401)
Q Consensus        82 ~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i  159 (401)
                      ...+++++....|++..  ....++..|++++.++.+.+.. +.++    ++    +++.++++.+| |..|.+.++++|
T Consensus       148 ~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~~-~~~~----~~----~~~Aavmi~~P-nt~G~~ed~~~i  217 (437)
T d1wyua1         148 TGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRT-PLPE----VG----EEVGAVVVQNP-NFLGALEDLGPF  217 (437)
T ss_dssp             HTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBC-CCCC----CC----TTEEEEEEESS-CTTSBCCCHHHH
T ss_pred             hcccccccccccChHHhhhhhhhcccceeeEEeeecccccc-hhhh----hc----cceeEEEEccc-cccccccchHHH
Confidence            34578888888777655  4456788899999999876543 2222    23    46788888877 558999999999


Q ss_pred             HHHhhhcCCCcEEEEecccccCcceeccCcccceEEEecCCCcccCC-----CcceEEEecHHHHHHhccCCCC------
Q 015729          160 RKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLP-----TGMGIVCASPKALEASKTAKSV------  228 (401)
Q Consensus       160 ~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~~K~l~g~-----~g~G~l~~~~~~~~~~~~~~~~------  228 (401)
                      .+++++  .|.++++|+..-.........++|+|+++++ +|.|+.|     ++.|++.+++++.+.++.....      
T Consensus       218 ~~~~h~--~G~l~~~~ad~~al~~l~~Pg~~GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~  294 (437)
T d1wyua1         218 AEAAHG--AGALFVAVADPLSLGVLKPPGAYGADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVE  294 (437)
T ss_dssp             HHHHHH--TTCEEEEECCTTGGGTBCCHHHHTCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTT
T ss_pred             HHHhhh--ccceEEeeechhhhhccccccccccceEeec-cceeccccCCCcCccccccccchhhccccccccccccccC
Confidence            999999  9998888865432223334567799999998 5555444     4569999999988777765421      


Q ss_pred             ---c--cccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCc
Q 015729          229 ---R--VFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW-GLKNCTQKEE  302 (401)
Q Consensus       229 ---~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~  302 (401)
                         .  ...+...+..+.++++....+...+.+.....-+..+..+|++++.++...++.++++.|.++ |+++..... 
T Consensus       295 G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~-  373 (437)
T d1wyua1         295 GRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKP-  373 (437)
T ss_dssp             SCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSS-
T ss_pred             CcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCC-
Confidence               1  112344566667777755556666544444444455667889999999999999999999987 887654322 


Q ss_pred             cCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCC-CCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          303 WFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLN-KVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~-~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                       ... -+.+.++  .++.++.++|.+. |+....... ....+.+.|++....|++|||++++++++++
T Consensus       374 -~f~-ef~v~~~--~~~~~i~k~L~d~-G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil  437 (437)
T d1wyua1         374 -FFN-EFALALP--KDPEAVRRALAER-GFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL  437 (437)
T ss_dssp             -BCS-EEEEECS--SCHHHHHHHHHHT-TCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             -eee-EEEEECC--CCHHHHHHHHHhC-CCCCCcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence             222 2335543  4788999999876 775222111 2235678999888899999999999998864

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.82  E-value=3.6e-18  Score=159.72  Aligned_cols=311  Identities=17%  Similarity=0.102  Sum_probs=198.8

Q ss_pred             ChHHHHHHHccCcCC--CCC-ccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc---------C-CCCCe
Q 015729           20 IPDQVIRAMNRNNED--YRS-PAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT---------L-SPGDR   86 (401)
Q Consensus        20 ~~~~v~~a~~~~~~~--~~~-~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~---------~-~~gd~   86 (401)
                      -+|++++|++++...  +.. ........++.+.+.++.+.+   .+.++.+|++|++.++...         . ....+
T Consensus        56 ~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~  132 (404)
T d1z7da1          56 CHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYD---KVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAK  132 (404)
T ss_dssp             TCHHHHHHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCE
T ss_pred             CcHHHHHHHHHHHHhCCCcccccchHHHHHHHHhhhhccccc---eeeeeccccchHHHHHHHHHHHHhhcccccccccc
Confidence            367787777764432  111 112234456667777776653   3889999999999876321         1 22346


Q ss_pred             EEEEcCCcchHHHHHHHHH--cCC---------cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc
Q 015729           87 IISFLIGQFSLLWIDQQQR--LNF---------NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN  155 (401)
Q Consensus        87 vl~~~~~~~~~~~~~~~~~--~g~---------~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~  155 (401)
                      ++....++++.........  ...         .+..++.+     +.+.++..+..   +++.+|++.......|.+.+
T Consensus       133 ~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~---~~iAavi~EPi~g~~G~~~~  204 (404)
T d1z7da1         133 IVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEELKD---PNVCAFIVEPIQGEAGVIVP  204 (404)
T ss_dssp             EEEETTC--------------------------CEEEECTT-----CHHHHHHHHTS---TTEEEEEECSSBSTTTSBCC
T ss_pred             cccccccCCCCcccccccccccccccCCCCCCccccccccc-----hHHHHHHHhcC---CCEEEEEEEEEcCCCCCccC
Confidence            7777777776542111111  011         11112211     56777776654   56889999988888898876


Q ss_pred             ----hHHHHHHhhhcCCCcEEEEecccccCc---ceecc--CcccceEEEecCCCcccCC-CcceEEEecHHHHHHhccC
Q 015729          156 ----LSKVRKLLDEYRHPALFLVDGVSSICA---IDFRM--DEWGIDVALTGSQKALSLP-TGMGIVCASPKALEASKTA  225 (401)
Q Consensus       156 ----l~~i~~l~~~~~~~~~li~D~a~~~~~---~~~~~--~~~~~di~~~s~~K~l~g~-~g~G~l~~~~~~~~~~~~~  225 (401)
                          +++|.++|++  +|+++|+||++....   ..+..  ....+|+++++  |.++++ ..+|.+++++++.+.+.+.
T Consensus       205 ~~~fl~~l~~lc~~--~g~llI~DEV~tGfgRtG~~~~~e~~gv~PDivt~g--K~l~gG~~p~~~v~~~~~i~~~~~~~  280 (404)
T d1z7da1         205 SDNYLQGVYDICKK--YNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLG--KALSGGHYPISAVLANDDIMLVIKPG  280 (404)
T ss_dssp             CTTHHHHHHHHHHH--TTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHTTCCTT
T ss_pred             CHHHHHHHHHHHHH--cCCEEEEEcCccCCCcccccccccccCCCCCEEEEc--ccccCCCCCcccccchHHHHccCCCC
Confidence                8999999999  999999999996321   11222  23347998877  999765 5789999999998766543


Q ss_pred             CCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCcc
Q 015729          226 KSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEW  303 (401)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~  303 (401)
                      ..                ++  +++.++..+++..++++.+.++.   ..++..+..+++.+.|.+.  ..++...  -.
T Consensus       281 ~~----------------~~--T~~gnpl~~aaa~a~L~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~v~~--vr  337 (404)
T d1z7da1         281 EH----------------GS--TYGGNPLAASICVEALNVLINEK---LCENAEKLGGPFLENLKRELKDSKIVRD--VR  337 (404)
T ss_dssp             CC----------------CC--TTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHTTCTTEEE--EE
T ss_pred             Cc----------------Cc--CCCCCcchhhhhhhhhhhhhcch---hhhhhccchhHHHHHHHHHHhcCCCeEE--EE
Confidence            11                11  33456778888888999887765   4455555555566555542  3333221  11


Q ss_pred             CCceeEEEEcCCC-CCHHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          304 FSDTVTAVIVPSH-INSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       304 ~~~~~~~~~~~~~-~~~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ..+.+..+.+.+. ....+++..|.++ ||.+.+.    .++.+||.+...+|++++|+++++|+++++++
T Consensus       338 g~Gl~~~i~~~~~~~~~~~~~~~l~~~-Gl~~~~~----~~~~ir~~Ppl~it~~~id~~~~~l~~alk~~  403 (404)
T d1z7da1         338 GKGLLCAIEFKNELVNVLDICLKLKEN-GLITRDV----HDKTIRLTPPLCITKEQLDECTEIIVKTVKFF  403 (404)
T ss_dssp             EETTEEEEEECTTTCCHHHHHHHHHHT-TEECCEE----TTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             eeCcEEEEEEcCCcccHHHHHHHHHhC-CeEEecC----CCCEEEEECCcCCCHHHHHHHHHHHHHHHHhh
Confidence            2445677777543 4566788888876 9987543    24679998777789999999999999999875

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=1.9e-18  Score=160.41  Aligned_cols=284  Identities=14%  Similarity=0.106  Sum_probs=196.5

Q ss_pred             HHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcchHHHHHHHHHcC------------C
Q 015729           43 LTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQFSLLWIDQQQRLN------------F  108 (401)
Q Consensus        43 ~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~~g------------~  108 (401)
                      ...++.+.+.+.... ..+.+.++++|++|++.+++.  ......+|+....+||+....... ..|            .
T Consensus        80 ~~~~la~~l~~~~~~-~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~-~s~~~~~~~~~~p~~~  157 (387)
T d1vefa1          80 MRGEFYRTLTAILPP-ELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLS-VTWEPKYREPFLPLVE  157 (387)
T ss_dssp             HHHHHHHHHHHTSCT-TEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHH-TCCCHHHHGGGCSCSS
T ss_pred             hHHHHHHHhhhhccc-cceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEe-ccCCccccCCCCCCCC
Confidence            334555555544322 224589999999999998843  234457888888888876532211 111            1


Q ss_pred             cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHhhhcCCCcEEEEecccccC-cc
Q 015729          109 NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFLVDGVSSIC-AI  183 (401)
Q Consensus       109 ~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li~D~a~~~~-~~  183 (401)
                      .+..+|.+     |.+.+++.++    +++.+|++.......|...+    ++++.++|++  +|+++|.||+++.. -.
T Consensus       158 ~~~~~p~~-----d~~~l~~~~~----~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~--~g~llI~DEV~tGfgR~  226 (387)
T d1vefa1         158 PVEFIPYN-----DVEALKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQE--KGALLILDEIQTGMGRT  226 (387)
T ss_dssp             CEEEECTT-----CHHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHH--HTCEEEEECTTTTTTTT
T ss_pred             CceEeCCC-----CHHHHHHhcC----CCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHH--cCceEEecccccccCcc
Confidence            34445433     7899999886    46789999988888888765    8899999999  99999999998643 11


Q ss_pred             --eecc--CcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHH
Q 015729          184 --DFRM--DEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGL  259 (401)
Q Consensus       184 --~~~~--~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~  259 (401)
                        .+..  -...+|+++++  |.++++..++.+..+++..+.+.+...                +.  +++.++..+++.
T Consensus       227 G~~~~~~~~~v~PDi~~~g--K~l~gG~~~~~~~~~~~~~~~~~~~~~----------------g~--T~~gnPla~aaa  286 (387)
T d1vefa1         227 GKRFAFEHFGIVPDILTLA--KALGGGVPLGVAVMREEVARSMPKGGH----------------GT--TFGGNPLAMAAG  286 (387)
T ss_dssp             SSSSTHHHHTCCCSEEEEC--GGGGTTSSCEEEEEEHHHHHTSCTTSS----------------CC--SSTTCHHHHHHH
T ss_pred             CCCcccccCCcCCceeeec--ccCCCCccccccccceeeeeccccCCc----------------cc--cCCCCcchhhhc
Confidence              1111  12347999988  999877777888888888776644311                22  345677888889


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEEcCCCCCHHHHHHHHHhhCCeEEccCCC
Q 015729          260 RAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPSHINSSEIVRRAWQRYNLSLGLGLN  339 (401)
Q Consensus       260 ~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~  339 (401)
                      .+.++.+.+..   ..++..+..+++.+.|+++.-+....  -...+.+..+.+.+. ....+.+.+.++ |+.+.+.  
T Consensus       287 ~a~L~~l~~~~---~~~~v~~~g~~l~~~L~~l~~~~v~~--vrg~Gl~~~ie~~~~-~~~~~~~~~~~~-g~l~~~~--  357 (387)
T d1vefa1         287 VAAIRYLERTR---LWERAAELGPWFMEKLRAIPSPKIRE--VRGMGLMVGLELKEK-AAPYIARLEKEH-RVLALQA--  357 (387)
T ss_dssp             HHHHHHHHHHT---THHHHHHHHHHHHHHHHTSCCTTEEE--EEEETTEEEEEESSC-SHHHHHHHHHHH-CEECEES--
T ss_pred             ccchhhccccc---ccchHhhhhHHHHHHHHhcCCCceEE--EeecceEEEEEEeCC-chHHHHHHHHHC-CCeEEec--
Confidence            99999887754   56677788888999998863333221  123456777888443 456677777666 7765432  


Q ss_pred             CCCCcEEEEeecccCCHHHHHHHHHHHHHHH
Q 015729          340 KVAGKVFRIGHLGHLNELQLLGCLAGVEMIL  370 (401)
Q Consensus       340 ~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l  370 (401)
                        .++.+|+.+...+|++|+|+++++|+++|
T Consensus       358 --g~~~ir~~Ppl~it~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         358 --GPTVIRFLPPLVIEKEDLERVVEAVRAVL  386 (387)
T ss_dssp             --STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             --CCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence              25689998887899999999999999886

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.81  E-value=3.7e-18  Score=161.11  Aligned_cols=305  Identities=13%  Similarity=0.088  Sum_probs=194.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhc--cCCCCCeEEEEcCCcchHHHHHHHHHc----------CCc
Q 015729           42 ALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTN--TLSPGDRIISFLIGQFSLLWIDQQQRL----------NFN  109 (401)
Q Consensus        42 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~--~~~~gd~vl~~~~~~~~~~~~~~~~~~----------g~~  109 (401)
                      +...++.++|.+...... +.+.++++||+|++.+++.  .....++|+....+||+.....+.-..          ...
T Consensus        83 ~~~~~la~~L~~~~~~~~-~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~  161 (431)
T d1zoda1          83 RPVVDLATRLANITPPGL-DRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVG  161 (431)
T ss_dssp             HHHHHHHHHHHHHSCTTC-CEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTT
T ss_pred             HHHHHHHHHHHHhCCccc-ceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccC
Confidence            344577777887764332 4599999999999999843  234557888888888886633222110          012


Q ss_pred             EEEEeCCCCCCC------------ChHHHHHHHhccCCCCceEEEEEecCCCcccccc----hHHHHHHhhhcCCCcEEE
Q 015729          110 VDVVESDWGEGA------------KLDVLASKLAADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPALFL  173 (401)
Q Consensus       110 ~~~v~~~~~~~~------------d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~li  173 (401)
                      ...++.......            +.+.++..+......++.++++.......|.+.+    +++|.++|++  +|+++|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~--~gillI  239 (431)
T d1zoda1         162 SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEA--RGMLLI  239 (431)
T ss_dssp             EEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHH--HTCEEE
T ss_pred             ceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHh--cCceEE
Confidence            233332221110            1233444333322257889999988877788765    8899999999  999999


Q ss_pred             Eeccccc-Ccc--ee--ccCcccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcCCCCC
Q 015729          174 VDGVSSI-CAI--DF--RMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP  248 (401)
Q Consensus       174 ~D~a~~~-~~~--~~--~~~~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  248 (401)
                      .||++.. |-.  .+  ......+|+++++  |.++++...+.++++++..........                ....+
T Consensus       240 ~DEV~tG~gRtG~~~~~~~~gv~PDi~~~g--K~l~gG~p~~av~~~~~~~~~~~~~~~----------------~~~~T  301 (431)
T d1zoda1         240 LDEAQTGVGRTGTMFACQRDGVTPDILTLS--KTLGAGLPLAAIVTSAAIEERAHELGY----------------LFYTT  301 (431)
T ss_dssp             EECTTTTTTTTSSSSTHHHHTCCCSEEEEC--HHHHTTSSCEEEEECHHHHHHHHHTTC----------------CCCCT
T ss_pred             eccccccccccccccccccCCCCcchhccc--cccccccccceeeeeecchhhhhcccc----------------cccCC
Confidence            9999874 311  11  1122347999987  999887777888888877665432110                11124


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCccccCCCccCCceeEEEEcCC--------CCC
Q 015729          249 YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLKNCTQKEEWFSDTVTAVIVPS--------HIN  318 (401)
Q Consensus       249 ~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~  318 (401)
                      ++.++..+++..++++.+.++.   ..++..+..+++.+.++++  ..++...  ....+.+..+++..        ..-
T Consensus       302 ~~g~pl~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~l~~~~~~~~~i~~--vrG~Glm~~ie~~~~~~~~~~~~~~  376 (431)
T d1zoda1         302 HVSDPLPAAVGLRVLDVVQRDG---LVARANVMGDRLRRGLLDLMERFDCIGD--VRGRGLLLGVEIVKDRRTKEPADGL  376 (431)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEE--EEEETTEEEEEEEEETTTTEECTTH
T ss_pred             CCCCcchHHHHHHHHHHhhhhh---hhHHHHHHHHHHhhhhhhhhhcCCCeEE--EeecceEEEEEEecCCcccCccHHH
Confidence            4677777888889999888765   4555556666666665553  2333221  11244566666511        111


Q ss_pred             HHHHHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          319 SSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       319 ~~~l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      ...+.+.|+++ |+.......+..++.+|+++...+|++|+|+++++++++++++
T Consensus       377 ~~~i~~~~~~~-Gl~~~~~~~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~v  430 (431)
T d1zoda1         377 GAKITRECMNL-GLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA  430 (431)
T ss_dssp             HHHHHHHHHHT-TEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-CcccCeeeecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            35677888876 8764433233346789999888899999999999999999864

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=3.2e-18  Score=157.99  Aligned_cols=234  Identities=13%  Similarity=0.014  Sum_probs=162.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      ......++++|+.+-|.+.   .+.+++|..|+..++.+++++||+|++....|.+..  +.......|+++.+++.+. 
T Consensus        57 nPT~~~LE~~la~LE~~~~---a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~-  132 (421)
T d2ctza1          57 NPTVDVLEKRLAALEGGKA---ALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE-  132 (421)
T ss_dssp             CHHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC-
T ss_pred             CHHHHHHHHHHHHHhCCCe---EEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceeccccc-
Confidence            4567799999999998765   678889999999999999999999999999877765  4456778999998876431 


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEEecccccCcceeccCcccceEEEec
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTG  198 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  198 (401)
                         +.+..++.++    +++++|++..|.||+..+.|+++|.++|++  +|+++++|.+.+.....+..-++|+|+++.|
T Consensus       133 ---~~~~~~~~~~----~~t~li~~EtpsNP~l~v~Di~~i~~iA~~--~g~~~vvDnT~a~tP~~~~Pl~~GaDiVvhS  203 (421)
T d2ctza1         133 ---RPEEFLALTD----EKTRAWWVESIGNPALNIPDLEALAQAARE--KGVALIVDNTFGMGGYLLRPLAWGAALVTHS  203 (421)
T ss_dssp             ---CHHHHHHHCC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHH--HTCEEEEECGGGGGGTSCCGGGGTCSEEEEE
T ss_pred             ---CcchhccccC----CCceEEEEcCCCcceeEecchHHHHHHHHh--cCCceEecccccccceeccccccCCcEEEEe
Confidence               3556666666    467999999999999999999999999999  9999999999763222344556789999999


Q ss_pred             CCCcccCCCc--ceEEEecHHHHH-Hhcc--C-CCCcccc--chHH------HHHHh--hcCCCCCCCCcHHHHHHHHHH
Q 015729          199 SQKALSLPTG--MGIVCASPKALE-ASKT--A-KSVRVFF--DWKD------YIKFY--NLGTFWPYTPSIQLLYGLRAA  262 (401)
Q Consensus       199 ~~K~l~g~~g--~G~l~~~~~~~~-~~~~--~-~~~~~~~--~~~~------~~~~~--~~g~~~~~~~~~~~~~a~~~a  262 (401)
                      .+|+++|...  .|.++.+++... ..+.  . .....+.  .+.+      +....  .....+....++..   +...
T Consensus       204 ~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~---a~l~  280 (421)
T d2ctza1         204 LTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFE---AWVV  280 (421)
T ss_dssp             TTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHH---HHHH
T ss_pred             chhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHH---HHHH
Confidence            9999987543  378877664311 0000  0 0000000  0000      11000  00000123466643   2333


Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHHHHHHc
Q 015729          263 LDLIFEEGLENVIERHRRLGKATRLAVEAW  292 (401)
Q Consensus       263 l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~  292 (401)
                      ++-++  -+.-++++..+++..+.+.|++.
T Consensus       281 ~rgl~--TL~lRm~~~~~nA~~vA~~L~~h  308 (421)
T d2ctza1         281 LLGME--TLSLRAERHVENTLHLAHWLLEQ  308 (421)
T ss_dssp             HHHHT--THHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hcCCc--chhhHHHHHHHHHHHHHhhhccC
Confidence            33222  25678899999999999999974

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.7e-18  Score=164.15  Aligned_cols=310  Identities=11%  Similarity=0.049  Sum_probs=192.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCe--------EEEEcCCcchHHHHHHHHHcCCcEEE
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR--------IISFLIGQFSLLWIDQQQRLNFNVDV  112 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~--------vl~~~~~~~~~~~~~~~~~~g~~~~~  112 (401)
                      .+.+.+|++++++++|.+.   ++++++||+|+..++.+++++|+.        .++....|+... .......|++++.
T Consensus        73 ~~~~~~le~~~a~l~G~~~---~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~G~~~~~  148 (467)
T d2v1pa1          73 SRSYYALAESVKNIFGYQY---TIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTT-QGHSQINGCTVRN  148 (467)
T ss_dssp             CHHHHHHHHHHHHHTCCSE---EEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHH-HHHHHHTTCEEEE
T ss_pred             CchHHHHHHHHHHHHCCCE---EEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEeccccccc-HHHHHHcCCeeee
Confidence            4667899999999999876   789999999999998777655443        344445555544 3455667888888


Q ss_pred             EeCCC----------CCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc-c---chHHHHHHhhhcCCCcEEEEeccc
Q 015729          113 VESDW----------GEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT-N---NLSKVRKLLDEYRHPALFLVDGVS  178 (401)
Q Consensus       113 v~~~~----------~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~-~---~l~~i~~l~~~~~~~~~li~D~a~  178 (401)
                      ++.+.          .+.+|++++++.+++...++++++++...++..|.. .   ++++|.++|++  ||+++|+|+++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~--~g~~l~~D~a~  226 (467)
T d2v1pa1         149 VYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK--YDIPVVMDSAR  226 (467)
T ss_dssp             CBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH--TTCCEEEECTT
T ss_pred             cccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHH--cCCEEEEechh
Confidence            87653          245799999999986543457788888777766543 3   47889999999  99999999998


Q ss_pred             ccCccee------ccC-----------cccceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHh
Q 015729          179 SICAIDF------RMD-----------EWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFY  241 (401)
Q Consensus       179 ~~~~~~~------~~~-----------~~~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (401)
                      .++....      ...           ...+|++++|.+|.++++.| |+++.+++........        . ......
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~g-g~i~~~~~~~~~~~~~--------~-~~~~~~  296 (467)
T d2v1pa1         227 FAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDVYTE--------C-RTLCVV  296 (467)
T ss_dssp             HHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHHHHH--------H-HHHHHH
T ss_pred             hhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCc-eeEEecchhhhhHHHh--------h-cccccc
Confidence            7553211      000           12479999999999876655 8888776543221100        0 000111


Q ss_pred             hcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCceeEEEE--cCC----
Q 015729          242 NLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVI--VPS----  315 (401)
Q Consensus       242 ~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~----  315 (401)
                      ..+....+......+.+....   +.....++..++..++.+++.+.|.+.+..+....   ....++...  ++.    
T Consensus       297 ~~~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~---~~~~~~~~~~~~~~~~~~  370 (467)
T d2v1pa1         297 QEGFPTYGGLEGGAMERLAVG---LYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAG---GHAAFVDAGKLLPHIPAD  370 (467)
T ss_dssp             TTSSCCCCCCCHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHHHHTTCCEEEEC---SSCEEEEHHHHSTTSCGG
T ss_pred             cccCcchhhhHHHHHHHHHHH---hHHhhhHHHHHHHHHHHHHHHHHHHhcCCcccCCC---ccceeecchhhcCCcchh
Confidence            112111222333222222222   22222345777778899999999999876654321   111111111  121    


Q ss_pred             CCCHHHHHHHHHhhCCeEEccC------C-------CCCCCcEEEEeec-ccCCHHHHHHHHHHHHHHHHh
Q 015729          316 HINSSEIVRRAWQRYNLSLGLG------L-------NKVAGKVFRIGHL-GHLNELQLLGCLAGVEMILKD  372 (401)
Q Consensus       316 ~~~~~~l~~~L~~~~~i~v~~g------~-------~~~~~~~~Ri~~~-~~~~~~di~~~~~~i~~~l~~  372 (401)
                      ......+...|..+.||.....      .       .+.....+|+++. ...|++|+|+++++|+++++.
T Consensus       371 ~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~  441 (467)
T d2v1pa1         371 QFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_dssp             GCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             hhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence            1122344444544558753211      0       1122356999754 456999999999999999864

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.79  E-value=3.3e-18  Score=163.52  Aligned_cols=328  Identities=13%  Similarity=0.044  Sum_probs=193.6

Q ss_pred             CCcCChHHHHHHHccCcCCCCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCe------EEE
Q 015729           16 GPVHIPDQVIRAMNRNNEDYRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDR------IIS   89 (401)
Q Consensus        16 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~------vl~   89 (401)
                      +..++.+....++..... .  +.....+.++++++++++|.+.   +++++|||+|++.++..++++|++      ..+
T Consensus        52 ~t~~~~~~~~a~~~~gd~-~--y~~~~~~~~le~~~a~l~g~~~---~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i  125 (465)
T d1ax4a_          52 GTNAMSDHQWAAMITGDE-A--YAGSRNYYDLKDKAKELFNYDY---IIPAHQGRGAENILFPVLLKYKQKEGKAKNPVF  125 (465)
T ss_dssp             SCCCEEHHHHHHHHTCCC-C--SSSCHHHHHHHHHHHHHHCCCE---EEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEE
T ss_pred             chhhhhHHHHHHHhhhhh-h--hccChHHHHHHHHHHHHHCCCE---EEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence            344555655555543222 2  2234667799999999999875   899999999999998776544332      223


Q ss_pred             EcCCcchHHHHHHHHHcCCcEEEEeC----------CCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccc-c---c
Q 015729           90 FLIGQFSLLWIDQQQRLNFNVDVVES----------DWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVT-N---N  155 (401)
Q Consensus        90 ~~~~~~~~~~~~~~~~~g~~~~~v~~----------~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~-~---~  155 (401)
                      ....|+... .......|..++.+..          +..+.+|++++++++++...+.+..++++..+|..|.. .   +
T Consensus       126 ~~~~h~~t~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  204 (465)
T d1ax4a_         126 ISNFHFDTT-AAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSN  204 (465)
T ss_dssp             EESSCCHHH-HHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHH
T ss_pred             eccchhhhh-HHHHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHH
Confidence            334455433 3445567777766543          22457899999999987553456667777766666543 3   3


Q ss_pred             hHHHHHHhhhcCCCcEEEEecccccCccee------ccC-----------cccceEEEecCCCcccCCCcceEEEecHHH
Q 015729          156 LSKVRKLLDEYRHPALFLVDGVSSICAIDF------RMD-----------EWGIDVALTGSQKALSLPTGMGIVCASPKA  218 (401)
Q Consensus       156 l~~i~~l~~~~~~~~~li~D~a~~~~~~~~------~~~-----------~~~~di~~~s~~K~l~g~~g~G~l~~~~~~  218 (401)
                      +++|.++|++  +|+++|+|+++..+....      ...           ....|++++|.+|.++ +++.|+++.++..
T Consensus       205 l~~i~~~~~~--~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~-~~~~g~l~~~~~~  281 (465)
T d1ax4a_         205 LKEVYEIAKQ--HGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPL-LNIGGLVAIRDNE  281 (465)
T ss_dssp             HHHHHHHHHH--HTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTC-CSSCEEEEESSCH
T ss_pred             HHHHHHHHHH--cCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcc-cccceeEeecchH
Confidence            6788999999  999999999986543211      000           0125899999999875 4445888887543


Q ss_pred             H--HHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 015729          219 L--EASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKN  296 (401)
Q Consensus       219 ~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~  296 (401)
                      .  ......           . .... +....+.....   ++.++.....+...+...++..++.+++.+.|++.|+++
T Consensus       282 ~~~~~~~~~-----------~-~~~~-~~~~~~~~~~~---~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~g~~~  345 (465)
T d1ax4a_         282 EIFTLARQR-----------C-VPME-GFVTYGGLAGR---DMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPI  345 (465)
T ss_dssp             HHHHHHHHH-----------H-HHHT-CSTTTTTCCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred             HHHHhhhcc-----------c-cccc-cCCCcchhhHH---HHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            1  111100           0 0000 11011122221   111121222222234566777788899999999998887


Q ss_pred             ccCCCccCCceeEEEEc----CC----CCCHHHHHHHHHhhCCeEEccCCC-------------CCCCcEEEEeec-ccC
Q 015729          297 CTQKEEWFSDTVTAVIV----PS----HINSSEIVRRAWQRYNLSLGLGLN-------------KVAGKVFRIGHL-GHL  354 (401)
Q Consensus       297 ~~~~~~~~~~~~~~~~~----~~----~~~~~~l~~~L~~~~~i~v~~g~~-------------~~~~~~~Ri~~~-~~~  354 (401)
                      ..+..   . ..+.+..    +.    +.........++.+.||.......             ......+|++.. ...
T Consensus       346 v~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~  421 (465)
T d1ax4a_         346 QYPTG---G-HAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVY  421 (465)
T ss_dssp             CSSCC---S-SEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSS
T ss_pred             ccCCC---c-ceeeeehhhhcCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCC
Confidence            65422   1 1222222    11    112233444444445887432211             112346999753 456


Q ss_pred             CHHHHHHHHHHHHHHHHhc
Q 015729          355 NELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       355 ~~~di~~~~~~i~~~l~~~  373 (401)
                      |+||+|+++++|+++.++.
T Consensus       422 T~eeiD~vv~~l~~v~~~~  440 (465)
T d1ax4a_         422 TNDHMDYIADALIGLKEKF  440 (465)
T ss_dssp             CHHHHHHHHHHHHTTHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988653

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=5.4e-17  Score=148.88  Aligned_cols=213  Identities=12%  Similarity=0.077  Sum_probs=154.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHH--HHHHHHHcCCcEEEEeCCCC
Q 015729           41 PALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLL--WIDQQQRLNFNVDVVESDWG  118 (401)
Q Consensus        41 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  118 (401)
                      ......++++|+++.|.+.   .+.+++|..|+..+ ..++.+||+|++....|.+..  +.......|+++.+++.   
T Consensus        54 nPT~~~lE~~la~LE~~~~---a~~~sSGmaAi~~~-l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~---  126 (393)
T d1n8pa_          54 NPNRENLERAVAALENAQY---GLAFSSGSATTATI-LQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTND---  126 (393)
T ss_dssp             CHHHHHHHHHHHHHTTCSE---EEEESCHHHHHHHH-HHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESS---
T ss_pred             ChHHHHHHHHHHHHhCCce---EEEecCchhHHHhh-hhcccCCCeeeeeeeecccchhhhhhhhhcccceeEEeec---
Confidence            4567789999999988755   66778888888654 567889999999988777665  44555677888887751   


Q ss_pred             CCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhc--CCCcEEEEecccccCcceeccCcccceEEE
Q 015729          119 EGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEY--RHPALFLVDGVSSICAIDFRMDEWGIDVAL  196 (401)
Q Consensus       119 ~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~--~~~~~li~D~a~~~~~~~~~~~~~~~di~~  196 (401)
                         +.++++++++.    ++++|++..|.||+..+.|+++|+++|+++  .+|+++++|.+.+... .++.-++|+|+++
T Consensus       127 ---~~~~~~~~i~~----~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~-~~~Pl~~GADiVv  198 (393)
T d1n8pa_         127 ---LLNDLPQLIKE----NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPY-ISNPLNFGADIVV  198 (393)
T ss_dssp             ---HHHHHHHHSCS----SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHH-HCCGGGGTCSEEE
T ss_pred             ---chHHHHHHhhh----hcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcc-cCCchhhCCCEEE
Confidence               46788888874    569999999999999999999999999942  3899999999865332 2344567899999


Q ss_pred             ecCCCcccCCCc--ceEEEecH-HHHHHhccCCCCccccchHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHH
Q 015729          197 TGSQKALSLPTG--MGIVCASP-KALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLEN  273 (401)
Q Consensus       197 ~s~~K~l~g~~g--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~  273 (401)
                      .|.+|+++|...  .|.++.++ +..+++...             . ...|    ..+++..   ++..++-++  -+..
T Consensus       199 hS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~-------------~-~~~G----~~~~p~~---a~ll~rgl~--Tl~l  255 (393)
T d1n8pa_         199 HSATKYINGHSDVVLGVLATNNKPLYERLQFL-------------Q-NAIG----AIPSPFD---AWLTHRGLK--TLHL  255 (393)
T ss_dssp             EETTTTTTCSSCCCCEEEEESCHHHHHHHHHH-------------H-HHHC----CCCCHHH---HHHHHHHHT--THHH
T ss_pred             EccccccCCCCccccceeeecchhHHHHHHHH-------------H-hhcC----CCCChHH---HHHHHhCCc--chhh
Confidence            999999987543  27776554 444544321             1 1112    2455532   233333222  2567


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 015729          274 VIERHRRLGKATRLAVEA  291 (401)
Q Consensus       274 ~~~~~~~~~~~l~~~L~~  291 (401)
                      +.++..+++..+.+.|++
T Consensus       256 R~~~~~~nA~~lA~~L~~  273 (393)
T d1n8pa_         256 RVRQAALSANKIAEFLAA  273 (393)
T ss_dssp             HHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            888899999999999964

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.74  E-value=6e-17  Score=153.60  Aligned_cols=328  Identities=14%  Similarity=0.112  Sum_probs=202.0

Q ss_pred             CCCCcccccCCC------cCChHHHHHHHccCcCC--------CCCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhH
Q 015729            6 APGKNHLFVPGP------VHIPDQVIRAMNRNNED--------YRSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTG   71 (401)
Q Consensus         6 ~~~~~~~~~~~p------~~~~~~v~~a~~~~~~~--------~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~   71 (401)
                      .-|+-|++.-+.      ..-+|+|.+++.+....        ..........+++.+.+.+..+... +.++++++|++
T Consensus        50 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~~~-~~v~f~~sGse  128 (461)
T d1ohwa_          50 VDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGM-SQLITMACGSC  128 (461)
T ss_dssp             TTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTC-CEEEEESSHHH
T ss_pred             CCCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcccccccccchHHHHHHHHHHHHhhhccCc-ceeeeecchhh
Confidence            345666654321      34567888888774321        1112222344556665655544433 45899999999


Q ss_pred             HHHHHHhcc----------------------------CCCCCeEEEEcCCcchHHHHHHHHHcCC-----------cEEE
Q 015729           72 AWESALTNT----------------------------LSPGDRIISFLIGQFSLLWIDQQQRLNF-----------NVDV  112 (401)
Q Consensus        72 a~~~~~~~~----------------------------~~~gd~vl~~~~~~~~~~~~~~~~~~g~-----------~~~~  112 (401)
                      |++.++...                            ..+..+|+....+||+.....+.- .|-           ....
T Consensus       129 Ave~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~-tg~~~~~~~~~~~~~~~~  207 (461)
T d1ohwa_         129 SNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLAT-THSKAIHKIDIPSFDWPI  207 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHT-CCSCHHHHTTCCCCCCCE
T ss_pred             hhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccc-cCCcccccccccccCCcc
Confidence            999887421                            123457899999988865332221 111           1111


Q ss_pred             EeCCC-CCC-------------CChHHHHHHHh---ccCCCCceEEEEEecCCCcccccc----hHHHHHHhhhcCCCcE
Q 015729          113 VESDW-GEG-------------AKLDVLASKLA---ADTAHTIKAICIVHNETATGVTNN----LSKVRKLLDEYRHPAL  171 (401)
Q Consensus       113 v~~~~-~~~-------------~d~~~le~~~~---~~~~~~~~~i~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~  171 (401)
                      .+... ...             .+.+++++.+.   +.. +++.+|++...+...|...+    +++|.++|++  +|++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~--~gil  284 (461)
T d1ohwa_         208 APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKK-KTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRK--HGCA  284 (461)
T ss_dssp             ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHH--TTCE
T ss_pred             cccccccccccccccccchhhhhhHHHHHHHHHHHHhCC-CccceeeeccccccccccCchhhHHHHHHHHHHh--hCcc
Confidence            22111 000             02345555443   222 56889999998888887764    7889999999  9999


Q ss_pred             EEEecccccCcc---eeccCcc----cceEEEecCCCcccCCCcceEEEecHHHHHHhccCCCCccccchHHHHHHhhcC
Q 015729          172 FLVDGVSSICAI---DFRMDEW----GIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLG  244 (401)
Q Consensus       172 li~D~a~~~~~~---~~~~~~~----~~di~~~s~~K~l~g~~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  244 (401)
                      +|+||++.....   .+..+.+    .+|+++++  |.+++    |++......    .....             ...+
T Consensus       285 lI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~g--K~l~~----g~~~~~~~~----~~~~~-------------~~~~  341 (461)
T d1ohwa_         285 FLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKMMT----GGFFHKEEF----RPNAP-------------YRIF  341 (461)
T ss_dssp             EEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEEC--GGGSS----EEEEECGGG----SCSST-------------TSSC
T ss_pred             eeccccccccccccccccccccccccCchhhhhh--hcccc----ccccccccc----ccccc-------------cccc
Confidence            999999874321   1222222    27888877  87742    344443322    11100             0011


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--CCc-cccCCCccCCceeEEEEcCCCCCHHH
Q 015729          245 TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAW--GLK-NCTQKEEWFSDTVTAVIVPSHINSSE  321 (401)
Q Consensus       245 ~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (401)
                      .  ++..++..+++..++++.+.+++   ..++..+..+++.+.|+++  .++ ++..  ....+.++.+++++.....+
T Consensus       342 ~--T~~g~p~~~aaa~a~l~~i~~~~---l~~~~~~~g~~l~~~l~~l~~~~~~~i~~--vrG~Gl~~~ie~~~~~~~~~  414 (461)
T d1ohwa_         342 N--TWLGDPSKNLLLAEVINIIKRED---LLSNAAHAGKVLLTGLLDLQARYPQFISR--VRGRGTFCSFDTPDESIRNK  414 (461)
T ss_dssp             C--SCSSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTTCEE--EEEETTEEEEECSSHHHHHH
T ss_pred             c--ccccccccchhhcccchhhhhhh---HHHHHHHHHHHHHHHHHHHHhhCCCceEE--eeeeeEEEEEEcCCHHHHHH
Confidence            1  23455677888889999988764   6667777777888888775  221 2211  11345677888865434557


Q ss_pred             HHHHHHhhCCeEEccCCCCCCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          322 IVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       322 l~~~L~~~~~i~v~~g~~~~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      +...|+++ |+.+.+.    .++.+||.+...+|++|+|+++++|+++|+++
T Consensus       415 i~~~~~~~-Gll~~~~----~~~~ir~~PpL~it~~eid~~~~~l~~~l~ef  461 (461)
T d1ohwa_         415 LISIARNK-GVMLGGC----GDKSIRFRPTLVFRDHHAHLFLNIFSDILADF  461 (461)
T ss_dssp             HHHHHHHT-TEECEEE----TTTEEECCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHC-CeEEeeC----CCCEEEEeCCcCCCHHHHHHHHHHHHHHHhcC
Confidence            88888877 9987653    25689998887899999999999999999874

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=5.7e-16  Score=145.54  Aligned_cols=345  Identities=12%  Similarity=0.058  Sum_probs=224.1

Q ss_pred             ccCCCcCChHHHHHHHccCcCCC--CCc-c----HHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhcc-----
Q 015729           13 FVPGPVHIPDQVIRAMNRNNEDY--RSP-A----VPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNT-----   80 (401)
Q Consensus        13 ~~~~p~~~~~~v~~a~~~~~~~~--~~~-~----~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-----   80 (401)
                      .++|--...|++.+.+......+  +++ +    ..+.+-|++.+|+++.|.+-.. .....|+|.+.++++.+.     
T Consensus        70 lG~~~~hy~P~v~~~~~~~~TaYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdvaN-aS~yDGatA~aeA~~ma~r~~~~  148 (471)
T d1wyub1          70 LGSCTMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAIT-LEPAAGAHGELTGILIIRAYHED  148 (471)
T ss_dssp             BTTTCCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEE-CCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CccccCccCcchhhhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccc-cccchHHHHHHHHHHHHHHHhhh
Confidence            34454456677888777644322  232 2    3455779999999999998532 455677776666554331     


Q ss_pred             --CCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHH
Q 015729           81 --LSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSK  158 (401)
Q Consensus        81 --~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~  158 (401)
                        -.....++++.+.++... .......+.+++.++.+..+..|.+.++...+.    .+..+++.+|++..+.....++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~a~v~v~~p~~~g~~e~~~~~  223 (471)
T d1wyub1         149 RGEGRTRRVVLVPDSAHGSN-PATASMAGYQVREIPSGPEGEVDLEALKRELGP----HVAALMLTNPNTLGLFERRILE  223 (471)
T ss_dssp             TTCTTTCCEEEEETTSCTHH-HHHHHHTTCEEEEECBCTTSSBCHHHHHHHCST----TEEEEEECSSCTTSCCCTTHHH
T ss_pred             cccccccccccCCcccccce-eeeeecccceeecccccccccccchhhhhhhhc----cccceeeccCCCcccccchhhh
Confidence              111123444545455444 244566778888888887777889888887764    4577777776654444345889


Q ss_pred             HHHHhhhcCCCcEEEEecccccCcc-eeccCcccceEEEecCCCcccC-----CCcceEEEecHHHHHHhccCCCC---c
Q 015729          159 VRKLLDEYRHPALFLVDGVSSICAI-DFRMDEWGIDVALTGSQKALSL-----PTGMGIVCASPKALEASKTAKSV---R  229 (401)
Q Consensus       159 i~~l~~~~~~~~~li~D~a~~~~~~-~~~~~~~~~di~~~s~~K~l~g-----~~g~G~l~~~~~~~~~~~~~~~~---~  229 (401)
                      +.+++++  .+..+++|.+...... .......+.|+++...++.|+.     ++++|++.+++++.+.++.....   .
T Consensus       224 ~~~~~h~--~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~  301 (471)
T d1wyub1         224 ISRLCKE--AGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEE  301 (471)
T ss_dssp             HHHHHHH--HTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSS
T ss_pred             hHHHHHh--ccccccccccchhhhhhccccCcccccccccccccccccccccccccccceeehhhhhccCCCceecCCCc
Confidence            9999999  8888888865332111 1222345678887777776633     46689999999998877754421   0


Q ss_pred             ccc--chHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccCCce
Q 015729          230 VFF--DWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDT  307 (401)
Q Consensus       230 ~~~--~~~~~~~~~~~g~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  307 (401)
                      .+.  ....+..    ++...+|.+.+.+.++..-+.++-.+|++++.+++.+++.|+++.|+..|+++....+. ..  
T Consensus       302 ~~~~~~~REqhI----rRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~~~~f-f~--  374 (471)
T d1wyub1         302 GFYLDFDRPKSI----GRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPS-MH--  374 (471)
T ss_dssp             CEEEECCCTTCC----CCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSC-CS--
T ss_pred             cccccCCCcccc----cchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhhcCceeccCcce-ee--
Confidence            010  0011111    11112344444444444555667788999999999999999999998789888654322 22  


Q ss_pred             eEEEEcCCCCCHHHHHHHHHhhCCeEEccCCCC-CCCcEEEEeecccCCHHHHHHHHHHHHHHHHhc
Q 015729          308 VTAVIVPSHINSSEIVRRAWQRYNLSLGLGLNK-VAGKVFRIGHLGHLNELQLLGCLAGVEMILKDV  373 (401)
Q Consensus       308 ~~~~~~~~~~~~~~l~~~L~~~~~i~v~~g~~~-~~~~~~Ri~~~~~~~~~di~~~~~~i~~~l~~~  373 (401)
                      -+.++++.+++..++.++|.+. |+.-....++ ...+.+-|++....|++|||++++++++++++.
T Consensus       375 EFvv~~~~~~~~~~i~k~L~~~-G~~~~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~  440 (471)
T d1wyub1         375 EFVAQPPEGFRALDLAKGLLEL-GFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKP  440 (471)
T ss_dssp             CEEEBCSTTCCHHHHHHHHHHT-TCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSC
T ss_pred             EEeecCCCCCCHHHHHHHHHHc-CCCCCcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence            2346777788888999999876 7743222222 234568898888899999999999999999875

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.10  E-value=1.3  Score=34.99  Aligned_cols=152  Identities=12%  Similarity=0.115  Sum_probs=73.0

Q ss_pred             CChHHHHHHHccCcCCC-CCccHHHHHHHHHHHHHHHhcCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchH
Q 015729           19 HIPDQVIRAMNRNNEDY-RSPAVPALTKTLLEDIKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSL   97 (401)
Q Consensus        19 ~~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~   97 (401)
                      .-|++|++++.++.... .........-++...+.+..+.+.   ++=.++++..-.+.+...++++.+|+..+......
T Consensus        18 ~~p~~vl~~~~~~~~~~~~~m~i~~~~G~lL~~lv~~~kpk~---ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~   94 (214)
T d2cl5a1          18 GDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSL---VLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYA   94 (214)
T ss_dssp             TCHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHCCSE---EEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHH
T ss_pred             CCHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHhhCCCE---EEEEccCchhHHHHHHHhCCCccEEEEEeccHHHH
Confidence            34567888776644221 111233334455555655554432   55555444433334444567777888887632212


Q ss_pred             H-HHHHHHHcCC--cEEEEeCCCCCCCChHHHHHHHhccCCCCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEE
Q 015729           98 L-WIDQQQRLNF--NVDVVESDWGEGAKLDVLASKLAADTAHTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLV  174 (401)
Q Consensus        98 ~-~~~~~~~~g~--~~~~v~~~~~~~~d~~~le~~~~~~~~~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~  174 (401)
                      . .....+..|.  ++..+.-+     ..+.+.+...........++++.+....   ......+.+..+....|.+|++
T Consensus        95 ~~a~~~~~~~gl~~~i~l~~Gd-----~~e~l~~l~~~~~~~~~D~ifiD~~~~~---~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1          95 AITQQMLNFAGLQDKVTILNGA-----SQDLIPQLKKKYDVDTLDMVFLDHWKDR---YLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             HHHHHHHHHHTCGGGEEEEESC-----HHHHGGGHHHHSCCCCEEEEEECSCGGG---HHHHHHHHHHTTCEEEEEEEEE
T ss_pred             HHHHHHHHHcCCCccceeeecc-----ccccccchhhcccccccceeeecccccc---cccHHHHHHHhCccCCCcEEEE
Confidence            1 2333455565  34444322     1233333332222134677777753221   1122223333332336778999


Q ss_pred             ecccccC
Q 015729          175 DGVSSIC  181 (401)
Q Consensus       175 D~a~~~~  181 (401)
                      |.+...|
T Consensus       167 Ddvl~~g  173 (214)
T d2cl5a1         167 DNVIVPG  173 (214)
T ss_dssp             SCCCCCC
T ss_pred             eCcCCCC
Confidence            9875444

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=82.78  E-value=7.4  Score=28.79  Aligned_cols=106  Identities=13%  Similarity=0.109  Sum_probs=47.7

Q ss_pred             cCCCCceEEecCChhHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCcEEEEeCCCCCCCChHHHHHHHhccCC
Q 015729           56 KTTSGTPFLIPTTGTGAWESALTNTLSPGDRIISFLIGQFSLLWIDQQQRLNFNVDVVESDWGEGAKLDVLASKLAADTA  135 (401)
Q Consensus        56 g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~le~~~~~~~~  135 (401)
                      +.++.+.+++.+.|.-++..+..+- ..|-+|++.+.  .... .+.++..|+....+..+..  -+.++..+.+.+..+
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak-~~Ga~vi~v~~--~~~r-~~~a~~~ga~~~~~~~~~~--~~~~~~~~~~~~~~g   96 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAK-AYGAFVVCTAR--SPRR-LEVAKNCGADVTLVVDPAK--EEESSIIERIRSAIG   96 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--CHHH-HHHHHHTTCSEEEECCTTT--SCHHHHHHHHHHHSS
T ss_pred             CCCCCCEEEEEcccccchhhHhhHh-hhcccccccch--HHHH-HHHHHHcCCcEEEeccccc--cccchhhhhhhcccc
Confidence            4444445555555555544433221 13446666654  2122 2455556665544432221  245555555544222


Q ss_pred             CCceEEEEEecCCCcccccchHHHHHHhhhcCCCcEEEE
Q 015729          136 HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLV  174 (401)
Q Consensus       136 ~~~~~i~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~li~  174 (401)
                      ..+..+ +..    +|....++...++++.  .|.++++
T Consensus        97 ~g~D~v-id~----~g~~~~~~~a~~~~~~--~G~iv~~  128 (170)
T d1e3ja2          97 DLPNVT-IDC----SGNEKCITIGINITRT--GGTLMLV  128 (170)
T ss_dssp             SCCSEE-EEC----SCCHHHHHHHHHHSCT--TCEEEEC
T ss_pred             cCCcee-eec----CCChHHHHHHHHHHhc--CCceEEE
Confidence            233333 322    2333445556666665  6655553