Citrus Sinensis ID: 015737

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-
MAALSTPIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEVVLLVSFYIVLVHFALRI
ccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccccccEEEEEEEccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHHHHHHccccccccEEEEEEEEccccHHHHHHHHHHHHHcccccEEEEEcccccccEEEEEEcccccccccccccccccccEEEEcccEEEEEEcccccccHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHHcccEEEEcccccccccccccccccccEEEEEcccEEEEcccccHHHHHHHHHHHHHHHHcccccccHHEEHHHHHcc
cccccccEEEEEcccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccEEEccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcEccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEEEccEEEcccEcccccccEccccEEEEEccEEEcEEcEEccHHHcHHHHHHHHHHHccEEEEEcEEcHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccccEEHHHccccccccccccEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEEEEcc
maalstpifaisfknptlpkrapnsvpraMVKEVyfnhdgsatKKLQAGVDLVAELVGvtlgpkgrnvvlqnkygppkivndgetvlkeieledpleniGVKLVRQAgartndlagdgctTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRngvvtiekgkcteNSLEIVEgmrfdrgflspyfvtdrqkrtvefhdgklllvdkkiknpKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIkapafgerkshylddiAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITkdstlivtdgSTRAAVEKRISEIRSLAEVVLLVSFYIVLVHFALRI
maalstpifaisfknptlpkrapnSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGvtlgpkgrnvvlqnkygppkivndgeTVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGvvtiekgkctensLEIVEGMRFDRGFLSpyfvtdrqkrtvefhdgklllvdkkiknpkDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIkapafgerkshyldDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIkvvitkdstlivtdgstraAVEKRISEIRSLAEVVLLVSFYIVLVHFALRI
MAALSTPIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEVVLLVSFYIVLVHFALRI
********FAI*****************AMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEVVLLVSFYIVLVHFAL**
******P*FAI*****************AMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKL*S*****HELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEVVLLVSFYIVLVHFALRI
MAALSTPIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEVVLLVSFYIVLVHFALRI
***LSTPIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEVVLLVSFYIVLVHFALRI
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHii
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SSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooo
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MAALSTPIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEVVLLVSFYIVLVHFALRI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query401 2.2.26 [Sep-21-2011]
Q9C667 611 Chaperonin 60 subunit bet yes no 0.887 0.582 0.786 1e-162
P08927 595 RuBisCO large subunit-bin N/A no 0.952 0.642 0.685 1e-147
P21241 588 RuBisCO large subunit-bin N/A no 0.912 0.622 0.665 1e-140
P21240 600 Chaperonin 60 subunit bet no no 0.907 0.606 0.660 1e-139
Q9LJE4 596 Chaperonin 60 subunit bet no no 0.877 0.590 0.681 1e-139
C0Z361 597 Chaperonin 60 subunit bet no no 0.877 0.589 0.673 1e-137
Q43831 499 RuBisCO large subunit-bin N/A no 0.765 0.615 0.687 1e-121
Q2JKV7 539 60 kDa chaperonin 2 OS=Sy yes no 0.867 0.645 0.509 1e-102
Q2JXD4 542 60 kDa chaperonin 1 OS=Sy yes no 0.877 0.649 0.504 1e-102
B0CFQ6 558 60 kDa chaperonin 1 OS=Ac yes no 0.867 0.623 0.508 2e-99
>sp|Q9C667|CPNB4_ARATH Chaperonin 60 subunit beta 4, chloroplastic OS=Arabidopsis thaliana GN=CPN60B4 PE=1 SV=1 Back     alignment and function desciption
 Score =  572 bits (1473), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 280/356 (78%), Positives = 320/356 (89%)

Query: 28  RAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVL 87
           RA  KEV+FN DGS TKKLQAG D+VA+L+GVTLGPKGRNVVLQNKYGPP+IVNDGETVL
Sbjct: 37  RAAAKEVHFNRDGSVTKKLQAGADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVL 96

Query: 88  KEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIA 147
           KEIELEDPLEN+GVKLVRQAGA+TNDLAGDG TTSIILA GLI EG+KVI+AG NP+Q+A
Sbjct: 97  KEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVA 156

Query: 148 RGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIE 207
           RGIEKT+KAL+ ELK  SRE+EDHELA VAAVSAGNDY VG MIS+A QQVGR GVVTIE
Sbjct: 157 RGIEKTTKALVLELKSMSREIEDHELAHVAAVSAGNDYEVGNMISNAFQQVGRTGVVTIE 216

Query: 208 KGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILD 267
           KGK   N+LEIVEGM+F+RG+LSPYFVTDR+KR  EFHD KLLLVDKKI NPKDMFKILD
Sbjct: 217 KGKYLVNNLEIVEGMQFNRGYLSPYFVTDRRKREAEFHDCKLLLVDKKITNPKDMFKILD 276

Query: 268 SAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGG 327
           SAVKE++P++IVAEDIEQ ALA +IRNKL+G LK AAIKAPAFGERKSH LDD+AI TG 
Sbjct: 277 SAVKEEFPVLIVAEDIEQDALAPVIRNKLKGNLKVAAIKAPAFGERKSHCLDDLAIFTGA 336

Query: 328 LVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAE 383
            VIRDEMGL+L+KAGKEVLGTA +V++TKDSTLIVT+G T+ AV++R+S+I++L E
Sbjct: 337 TVIRDEMGLSLEKAGKEVLGTAKRVLVTKDSTLIVTNGFTQKAVDERVSQIKNLIE 392
Involved specifically in the folding of NDHH, a subunit of the chloroplast NADH dehydrogenase-like complex (NDH).
Arabidopsis thaliana (taxid: 3702)
>sp|P08927|RUBB_PEA RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2 Back     alignment and function description
>sp|P21241|RUBB_BRANA RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|P21240|CPNB1_ARATH Chaperonin 60 subunit beta 1, chloroplastic OS=Arabidopsis thaliana GN=CPN60B1 PE=1 SV=3 Back     alignment and function description
>sp|Q9LJE4|CPNB2_ARATH Chaperonin 60 subunit beta 2, chloroplastic OS=Arabidopsis thaliana GN=CPN60B2 PE=1 SV=1 Back     alignment and function description
>sp|C0Z361|CPNB3_ARATH Chaperonin 60 subunit beta 3, chloroplastic OS=Arabidopsis thaliana GN=CPN60B3 PE=1 SV=1 Back     alignment and function description
>sp|Q43831|RUBB_SECCE RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1 Back     alignment and function description
>sp|Q2JKV7|CH602_SYNJB 60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=groL2 PE=3 SV=1 Back     alignment and function description
>sp|Q2JXD4|CH601_SYNJA 60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1 Back     alignment and function description
>sp|B0CFQ6|CH601_ACAM1 60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query401
359473645 610 PREDICTED: chaperonin 60 subunit beta 4, 0.937 0.616 0.841 0.0
297738225 584 unnamed protein product [Vitis vinifera] 0.882 0.606 0.870 1e-176
255546981 592 rubisco subunit binding-protein beta sub 0.942 0.638 0.804 1e-174
449478338 597 PREDICTED: LOW QUALITY PROTEIN: chaperon 0.955 0.641 0.743 1e-167
449434702 597 PREDICTED: chaperonin 60 subunit beta 4, 0.955 0.641 0.743 1e-167
15222666 611 TCP-1/cpn60 chaperonin-like protein [Ara 0.887 0.582 0.786 1e-160
62320622 611 chaperonin precursor [Arabidopsis thalia 0.887 0.582 0.786 1e-160
356502680 646 PREDICTED: ruBisCO large subunit-binding 0.932 0.578 0.747 1e-160
224111818475 predicted protein [Populus trichocarpa] 0.827 0.698 0.840 1e-158
356495746 575 PREDICTED: ruBisCO large subunit-binding 0.882 0.615 0.776 1e-156
>gi|359473645|ref|XP_002269341.2| PREDICTED: chaperonin 60 subunit beta 4, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/379 (84%), Positives = 350/379 (92%), Gaps = 3/379 (0%)

Query: 8   IFAISFKNPTLPKRAPNSV---PRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPK 64
           + A+SF N TLP+R+ ++    PRAM KE+YFNHDGSATKKLQAGVD+VAELVGVTLGPK
Sbjct: 2   VSALSFSNLTLPRRSFSTTAWNPRAMAKELYFNHDGSATKKLQAGVDMVAELVGVTLGPK 61

Query: 65  GRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSII 124
           GRNVVLQNKYGPPKIVNDGETVLKEIELEDPLEN+GVKLVRQAGA+TN LAGDG TTS+I
Sbjct: 62  GRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNHLAGDGSTTSVI 121

Query: 125 LAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGND 184
           LA+GLIAEGVKVIAAGMNP+QI+RGIEKT+ AL+SELKL SREVEDHELA VAAVSAGND
Sbjct: 122 LARGLIAEGVKVIAAGMNPIQISRGIEKTAMALVSELKLMSREVEDHELAHVAAVSAGND 181

Query: 185 YTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEF 244
           YTVG MISDA++QVGR GV+TIEKGKC ENSL+IVEGM+FDRG+LSPYFVTDRQK  VEF
Sbjct: 182 YTVGNMISDAIRQVGRRGVITIEKGKCAENSLQIVEGMQFDRGYLSPYFVTDRQKMMVEF 241

Query: 245 HDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAA 304
           HD KLLLVDKKI NPK+MFKILD+AVKEKYPIVIVAE IEQ+ALA +IRNKLRGVLKAAA
Sbjct: 242 HDCKLLLVDKKITNPKEMFKILDNAVKEKYPIVIVAEGIEQEALAPVIRNKLRGVLKAAA 301

Query: 305 IKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTD 364
           IKAPAFGERKSHYLDD+AILTGG VI DEMGLTL+KAGKEVLGTA KVVITKDSTLIVTD
Sbjct: 302 IKAPAFGERKSHYLDDLAILTGGTVISDEMGLTLEKAGKEVLGTATKVVITKDSTLIVTD 361

Query: 365 GSTRAAVEKRISEIRSLAE 383
           GST+ AVEKR+S+IR L E
Sbjct: 362 GSTQPAVEKRVSQIRGLVE 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738225|emb|CBI27426.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255546981|ref|XP_002514548.1| rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis] gi|223546152|gb|EEF47654.1| rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449478338|ref|XP_004155289.1| PREDICTED: LOW QUALITY PROTEIN: chaperonin 60 subunit beta 4, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449434702|ref|XP_004135135.1| PREDICTED: chaperonin 60 subunit beta 4, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15222666|ref|NP_173947.1| TCP-1/cpn60 chaperonin-like protein [Arabidopsis thaliana] gi|75308802|sp|Q9C667.1|CPNB4_ARATH RecName: Full=Chaperonin 60 subunit beta 4, chloroplastic; Short=CPN-60 beta 4; Flags: Precursor gi|12321186|gb|AAG50688.1|AC079829_21 chaperonin precursor, putative [Arabidopsis thaliana] gi|332192542|gb|AEE30663.1| TCP-1/cpn60 chaperonin-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|62320622|dbj|BAD95277.1| chaperonin precursor [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356502680|ref|XP_003520145.1| PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|224111818|ref|XP_002315987.1| predicted protein [Populus trichocarpa] gi|222865027|gb|EEF02158.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356495746|ref|XP_003516734.1| PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query401
TAIR|locus:2028751 611 Cpn60beta4 "chaperonin-60beta4 0.952 0.625 0.751 2.2e-146
TAIR|locus:2092825 596 Cpn60beta2 "chaperonin-60beta2 0.942 0.634 0.645 1.4e-126
TAIR|locus:2193839 600 CPN60B "chaperonin 60 beta" [A 0.907 0.606 0.660 1.8e-126
UNIPROTKB|Q05972 541 groL1 "60 kDa chaperonin 1" [S 0.875 0.648 0.490 1.9e-90
TIGR_CMR|SO_0704 545 SO_0704 "chaperonin GroEL" [Sh 0.872 0.642 0.490 4.6e-89
TIGR_CMR|CJE_1356 545 CJE_1356 "co-chaperonin GroEL" 0.877 0.645 0.477 2.9e-87
UNIPROTKB|Q9KNR7 544 groL1 "60 kDa chaperonin 1" [V 0.872 0.643 0.467 4.3e-86
TIGR_CMR|CBU_1718 552 CBU_1718 "chaperonin, 60 kDa" 0.870 0.632 0.468 4.3e-86
TIGR_CMR|GSU_3340 544 GSU_3340 "60 kDa chaperonin" [ 0.867 0.639 0.467 4.3e-86
TIGR_CMR|VC_2664 544 VC_2664 "chaperonin, 60 Kd sub 0.872 0.643 0.467 4.3e-86
TAIR|locus:2028751 Cpn60beta4 "chaperonin-60beta4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1430 (508.4 bits), Expect = 2.2e-146, P = 2.2e-146
 Identities = 291/387 (75%), Positives = 335/387 (86%)

Query:     2 AALST-PIFAISF-KNPTLPKRA-PNSV--PRAMVKEVYFNHDGSATKKLQAGVDLVAEL 56
             AALS  P+   +F K P+    + PN V   RA  KEV+FN DGS TKKLQAG D+VA+L
Sbjct:     6 AALSALPLSDRTFRKKPSSSSSSSPNFVLRVRAAAKEVHFNRDGSVTKKLQAGADMVAKL 65

Query:    57 VGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAG 116
             +GVTLGPKGRNVVLQNKYGPP+IVNDGETVLKEIELEDPLEN+GVKLVRQAGA+TNDLAG
Sbjct:    66 LGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAG 125

Query:   117 DGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADV 176
             DG TTSIILA GLI EG+KVI+AG NP+Q+ARGIEKT+KAL+ ELK  SRE+EDHELA V
Sbjct:   126 DGSTTSIILAHGLITEGIKVISAGTNPIQVARGIEKTTKALVLELKSMSREIEDHELAHV 185

Query:   177 AAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTD 236
             AAVSAGNDY VG MIS+A QQVGR GVVTIEKGK   N+LEIVEGM+F+RG+LSPYFVTD
Sbjct:   186 AAVSAGNDYEVGNMISNAFQQVGRTGVVTIEKGKYLVNNLEIVEGMQFNRGYLSPYFVTD 245

Query:   237 RQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKL 296
             R+KR  EFHD KLLLVDKKI NPKDMFKILDSAVKE++P++IVAEDIEQ ALA +IRNKL
Sbjct:   246 RRKREAEFHDCKLLLVDKKITNPKDMFKILDSAVKEEFPVLIVAEDIEQDALAPVIRNKL 305

Query:   297 RGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITK 356
             +G LK AAIKAPAFGERKSH LDD+AI TG  VIRDEMGL+L+KAGKEVLGTA +V++TK
Sbjct:   306 KGNLKVAAIKAPAFGERKSHCLDDLAIFTGATVIRDEMGLSLEKAGKEVLGTAKRVLVTK 365

Query:   357 DSTLIVTDGSTRAAVEKRISEIRSLAE 383
             DSTLIVT+G T+ AV++R+S+I++L E
Sbjct:   366 DSTLIVTNGFTQKAVDERVSQIKNLIE 392
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0042026 "protein refolding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0006457 "protein folding" evidence=IMP
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA
GO:0016556 "mRNA modification" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0043085 "positive regulation of catalytic activity" evidence=RCA
TAIR|locus:2092825 Cpn60beta2 "chaperonin-60beta2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2193839 CPN60B "chaperonin 60 beta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q05972 groL1 "60 kDa chaperonin 1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0704 SO_0704 "chaperonin GroEL" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1356 CJE_1356 "co-chaperonin GroEL" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNR7 groL1 "60 kDa chaperonin 1" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1718 CBU_1718 "chaperonin, 60 kDa" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3340 GSU_3340 "60 kDa chaperonin" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2664 VC_2664 "chaperonin, 60 Kd subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2JKV7CH602_SYNJBNo assigned EC number0.50990.86780.6456yesno
B0CFQ6CH601_ACAM1No assigned EC number0.50850.86780.6236yesno
Q9C667CPNB4_ARATHNo assigned EC number0.78650.88770.5826yesno
Q2JXD4CH601_SYNJANo assigned EC number0.50420.87780.6494yesno
P0A337CH602_THEEBNo assigned EC number0.50140.87780.6482yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
PLN03167 600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 0.0
cd03344 520 cd03344, GroEL, GroEL_like type I chaperonin 1e-159
PRK00013 542 PRK00013, groEL, chaperonin GroEL; Reviewed 1e-154
PRK12849 542 PRK12849, groEL, chaperonin GroEL; Reviewed 1e-149
TIGR02348 524 TIGR02348, GroEL, chaperonin GroL 1e-141
PTZ00114 555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 1e-132
CHL00093 529 CHL00093, groEL, chaperonin GroEL 1e-128
PRK12851 541 PRK12851, groEL, chaperonin GroEL; Reviewed 1e-127
PRK12850 544 PRK12850, groEL, chaperonin GroEL; Reviewed 1e-126
PRK12852 545 PRK12852, groEL, chaperonin GroEL; Reviewed 1e-118
PRK14104 546 PRK14104, PRK14104, chaperonin GroEL; Provisional 1e-101
COG0459 524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-88
cd00309 464 cd00309, chaperonin_type_I_II, chaperonin families 1e-64
pfam00118 481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 5e-60
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 3e-17
TIGR02345 523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 3e-14
TIGR02343 532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 3e-14
TIGR02339 519 TIGR02339, thermosome_arch, thermosome, various su 2e-10
cd03340 522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 2e-10
cd03336 517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 3e-10
cd03339 526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 6e-10
cd03338 515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 9e-10
cd03343 517 cd03343, cpn60, cpn60 chaperonin family 1e-09
TIGR02341 518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 2e-09
PTZ00212 533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 5e-09
TIGR02342 517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 9e-09
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 8e-08
TIGR02347 531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 1e-07
TIGR02340 536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 2e-07
TIGR02346 531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 4e-07
TIGR02344 525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 3e-06
cd03335 527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 3e-06
cd03342 484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 6e-06
cd03337 480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 3e-05
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information 
 Score =  530 bits (1367), Expect = 0.0
 Identities = 254/371 (68%), Positives = 311/371 (83%), Gaps = 2/371 (0%)

Query: 14  KNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNK 73
           ++  L +     V  A  KE++FN DGSA KKLQAGV+ +A+LVGVTLGPKGRNVVL++K
Sbjct: 41  QSVRLRRSRSPKVKAA--KELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESK 98

Query: 74  YGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEG 133
           YG PKIVNDG TV KE+ELEDP+ENIG KLVRQA A+TNDLAGDG TTS++LAQGLIAEG
Sbjct: 99  YGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEG 158

Query: 134 VKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISD 193
           VKV+AAG NPVQI RGIEKT+KAL+ ELK  S+EVED ELADVAAVSAGN+Y VG MI++
Sbjct: 159 VKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNNYEVGNMIAE 218

Query: 194 ALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD 253
           A+ +VGR GVVT+E+GK  EN+L +VEGM+FDRG++SPYFVTD +K +VE+ + KLLLVD
Sbjct: 219 AMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVD 278

Query: 254 KKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313
           KKI N +D+  IL+ A++  YP++I+AEDIEQ+ALA L+ NKLRG LK AA+KAP FGER
Sbjct: 279 KKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGER 338

Query: 314 KSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEK 373
           KS YLDDIAILTGG VIR+E+GL+LDK GKEVLGTA KVV+TKD+T IV DGST+ AV K
Sbjct: 339 KSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNK 398

Query: 374 RISEIRSLAEV 384
           R+++I++L E 
Sbjct: 399 RVAQIKNLIEA 409

Length = 600
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 401
PLN03167 600 Chaperonin-60 beta subunit; Provisional 100.0
PTZ00114 555 Heat shock protein 60; Provisional 100.0
PRK12849 542 groEL chaperonin GroEL; Reviewed 100.0
PRK12850 544 groEL chaperonin GroEL; Reviewed 100.0
PRK00013 542 groEL chaperonin GroEL; Reviewed 100.0
PRK12852 545 groEL chaperonin GroEL; Reviewed 100.0
TIGR02348 524 GroEL chaperonin GroL. This family consists of Gro 100.0
cd03344 520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
PRK12851 541 groEL chaperonin GroEL; Reviewed 100.0
CHL00093 529 groEL chaperonin GroEL 100.0
PRK14104 546 chaperonin GroEL; Provisional 100.0
KOG0356 550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
TIGR02339 519 thermosome_arch thermosome, various subunits, arch 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03335 527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02343 532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
cd03339 526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
cd03340 522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02347 531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
TIGR02340 536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
TIGR02344 525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
cd03342 484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03338 515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02345 522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
TIGR02342 517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
cd03336 517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
PTZ00212 533 T-complex protein 1 subunit beta; Provisional 100.0
cd03337 480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02346 531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
cd00309 464 chaperonin_type_I_II chaperonin families, type I a 100.0
COG0459 524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
KOG0361 543 consensus Chaperonin complex component, TCP-1 eta 100.0
TIGR02341 519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
cd03341 472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0358 534 consensus Chaperonin complex component, TCP-1 delt 100.0
KOG0363 527 consensus Chaperonin complex component, TCP-1 beta 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0360 545 consensus Chaperonin complex component, TCP-1 alph 100.0
KOG0362 537 consensus Chaperonin complex component, TCP-1 thet 100.0
KOG0364 527 consensus Chaperonin complex component, TCP-1 gamm 100.0
KOG0359 520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357 400 consensus Chaperonin complex component, TCP-1 epsi 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.93
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 99.92
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.26
COG0459 524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 96.66
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.3e-76  Score=623.64  Aligned_cols=359  Identities=70%  Similarity=1.042  Sum_probs=346.0

Q ss_pred             CCccccceeeecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHH
Q 015737           25 SVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLV  104 (401)
Q Consensus        25 ~~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll  104 (401)
                      .+.+.|+|++.||.+-+||+.+++||+.++++|+|||||+||+|||+++.|+++|||||+||+|+|+++||++|+||+|+
T Consensus        50 ~~~~~~~k~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll  129 (600)
T PLN03167         50 SPKVKAAKELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLV  129 (600)
T ss_pred             CchhhhcceeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHH
Confidence            44567799999993117999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccccccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccchhhhHhhhhhccCCc
Q 015737          105 RQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGND  184 (401)
Q Consensus       105 ~~~a~~qd~~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~l~~va~ts~~~~  184 (401)
                      +++|++||+++||||||++||+++||+++.++++.|+||..|++||++|.+.+++.|++++.|+++.+|.++|++|++++
T Consensus       130 ~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~~~  209 (600)
T PLN03167        130 RQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNN  209 (600)
T ss_pred             HHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999997668999999999999


Q ss_pred             hhHHHHHHHHHHhhccCCcEEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCCCHHHHHH
Q 015737          185 YTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFK  264 (401)
Q Consensus       185 ~~la~li~~Av~~v~~~g~I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~~~~~i~~  264 (401)
                      +.|+++++||+.+++++|.|++++|++++|++++++|++|+++|.||||++++++|+++++||+|+++|++|++++++.+
T Consensus       210 ~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~  289 (600)
T PLN03167        210 YEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIG  289 (600)
T ss_pred             HHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHH
Confidence            99999999999999988999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecCCCCcccCCCCC
Q 015737          265 ILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKE  344 (401)
Q Consensus       265 ~le~i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~  344 (401)
                      ++|++.+.|+|+||++++|+++++++|+.|+++|.++|+|||+|+||+.++++|+|||++|||++++++.|+++++++++
T Consensus       290 ~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~  369 (600)
T PLN03167        290 ILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKE  369 (600)
T ss_pred             HHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888899999999


Q ss_pred             CceeeeEEEEEcCeEEEEccCCCHHHHHHHHHHHHHHHH
Q 015737          345 VLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAE  383 (401)
Q Consensus       345 ~LG~~~~v~v~~~~~tIi~~g~~~~~l~e~~~~l~~~l~  383 (401)
                      +||+|++|+++++.|+|+.+.++++.+++++..|+..++
T Consensus       370 ~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~  408 (600)
T PLN03167        370 VLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIE  408 (600)
T ss_pred             HCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhh
Confidence            999999999999999999999999999999999998874

>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
1iok_A 545 Crystal Structure Of Chaperonin-60 From Paracoccus 2e-91
1j4z_A 547 Structural And Mechanistic Basis For Allostery In T 1e-90
2eu1_A 548 Crystal Structure Of The Chaperonin Groel-E461k Len 1e-90
3c9v_A 526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 1e-90
4aaq_A 548 Atp-Triggered Molecular Mechanics Of The Chaperonin 1e-90
1pcq_A 524 Crystal Structure Of Groel-Groes Length = 524 1e-90
1aon_A 547 Crystal Structure Of The Asymmetric Chaperonin Comp 1e-90
2yey_A 524 Crystal Structure Of The Allosteric-Defective Chape 1e-90
1kp8_A 547 Structural Basis For Groel-Assisted Protein Folding 3e-90
1ss8_A 524 Groel Length = 524 5e-90
1sx3_A 525 Groel14-(Atpgammas)14 Length = 525 6e-90
1gr5_A 547 Solution Structure Of Apo Groel By Cryo-Electron Mi 6e-90
1grl_A 548 The Crystal Structure Of The Bacterial Chaperonin G 2e-89
1oel_A 547 Conformational Variability In The Refined Structure 3e-89
3cau_A 526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 3e-89
1we3_A 543 Crystal Structure Of The Chaperonin Complex Cpn60CP 1e-86
3rtk_A 546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 4e-85
1sjp_A 504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 2e-74
1la1_A192 Gro-El Fragment (Apical Domain) Comprising Residues 5e-40
1fy9_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 1e-39
1fya_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 3e-39
1kid_A203 Groel (Hsp60 Class) Fragment (Apical Domain) Compri 4e-39
3osx_A201 Crystal Structure Of Apical Domain Of Insecticidal 8e-39
1jon_A155 Groel (Hsp60 Class) Fragment Comprising Residues 19 2e-37
1dk7_A146 Crystal Structure Of An Isolated Apical Domain Of G 3e-36
1srv_A145 Thermus Thermophilus Groel (Hsp60 Class) Fragment ( 2e-32
3m6c_A194 Crystal Structure Of Mycobacterium Tuberculosis Gro 2e-31
3p9d_E 562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-12
3iyg_E 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-09
3iyg_D 518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-09
1q3r_A 548 Crystal Structure Of The Chaperonin From Thermococc 2e-09
3p9d_G 550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 5e-09
1a6d_B 543 Thermosome From T. Acidophilum Length = 543 7e-09
1a6d_A 545 Thermosome From T. Acidophilum Length = 545 7e-09
3iyg_H 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-08
1q2v_A 548 Crystal Structure Of The Chaperonin From Thermococc 2e-08
3ko1_A 553 Cystal Structure Of Thermosome From Acidianus Tengc 3e-08
1q3s_A 548 Crystal Structure Of The Chaperonin From Thermococc 3e-08
3p9d_H 568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-08
3los_A 543 Atomic Model Of Mm-Cpn In The Closed State Length = 5e-08
3rus_A 543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 5e-08
3iyf_A 521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 6e-08
3p9d_D 528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 7e-08
3izi_A 513 Mm-Cpn Rls With Atp Length = 513 1e-07
3izh_A 513 Mm-Cpn D386a With Atp Length = 513 1e-07
3izn_A 491 Mm-Cpn Deltalid With Atp Length = 491 1e-07
3j02_A 491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 1e-07
3izk_A 491 Mm-Cpn Rls Deltalid With Atp Length = 491 1e-07
3iyg_B 513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-07
3iyg_Z 517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-07
3p9d_B 527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-06
3p9d_C 590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-06
3p9d_F 546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 6e-06
3iyg_G 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 9e-06
3iyg_A 529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-05
3p9d_A 559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-05
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure 
Iteration: 1

 Score =  332 bits (852), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 168/353 (47%), Positives = 244/353 (69%), Gaps = 3/353 (0%)
Query: 32  KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIE 91
           KEV FN D  A  ++  GV+++A+ V VTLGPKGRNVV+   +G P+I  DG +V KEIE
Sbjct: 4   KEVKFNSD--ARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIE 61
Query: 92  LEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIE 151
           L D  EN+G ++VR+  +RTND AGDG TT+ +LAQ ++ EG+K +AAGMNP+ + RGI+
Sbjct: 62  LSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGID 121
Query: 152 KTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGK 210
             +  ++  +K  +R V D  E+A V  +SA  +  +G+ I++A+Q+VG  GV+T+E+ K
Sbjct: 122 VATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENK 181
Query: 211 CTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270
             E  +E+VEGM+FDRG+LSPYFVT+  K   E  D  +LL +KK+ + + M  +L+S +
Sbjct: 182 GMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVI 241
Query: 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVI 330
           + + P++IVAED+E +ALA L+ NKLRG LK AA+KAP FG+R+   L DIAILTGG VI
Sbjct: 242 QSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVI 301
Query: 331 RDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAE 383
            +++G+ L+    ++LG A KV I KD+T IV     +A +E R+S+IR   E
Sbjct: 302 SEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIE 354
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues 188-379 Length = 192 Back     alignment and structure
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 191-376, Mutant With Ala 262 Replaced With Leu And Ile 267 Replaced With Met Length = 203 Back     alignment and structure
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel From Xenorhapdus Nematophila Length = 201 Back     alignment and structure
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345 Length = 155 Back     alignment and structure
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel Length = 146 Back     alignment and structure
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 192-336 Length = 145 Back     alignment and structure
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1 Apical Domain Length = 194 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 1e-150
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 1e-150
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 1e-149
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 1e-149
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 1e-66
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 2e-65
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 2e-57
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 2e-15
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 3e-15
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 8e-15
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 4e-14
3iyg_G 515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 6e-14
3iyg_Q 512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 7e-14
3iyg_Z 517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 1e-13
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 2e-13
3p9d_D 528 T-complex protein 1 subunit delta; HSP60, eukaryot 2e-13
3iyg_D 518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 3e-13
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 3e-13
3p9d_E 562 T-complex protein 1 subunit epsilon; HSP60, eukary 3e-13
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 6e-13
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 7e-13
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 1e-12
3iyg_H 515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 1e-12
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 1e-12
3iyg_B 513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 4e-12
3iyg_E 515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 6e-12
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 1e-11
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 1e-09
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 1e-08
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
 Score =  434 bits (1119), Expect = e-150
 Identities = 164/355 (46%), Positives = 241/355 (67%), Gaps = 4/355 (1%)

Query: 30  MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKE 89
           M K + F+    A + L+ GV+ VA  V VTLGP+GRNVVL+ K+G P I  DG TV KE
Sbjct: 1   MAKILVFDEA--ARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKE 58

Query: 90  IELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARG 149
           +ELED LENIG +L+++  ++TND+AGDG TT+ +LAQ ++ EG+K +AAG NP+ + RG
Sbjct: 59  VELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRG 118

Query: 150 IEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEK 208
           IEK  +A + ++K  +  VED   + +VA +SA ND  VGK+I+DA+++VG+ G++T+E+
Sbjct: 119 IEKAVEAAVEKIKALAIPVEDRKAIEEVATISA-NDPEVGKLIADAMEKVGKEGIITVEE 177

Query: 209 GKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268
            K  E  L+ VEG +FD+G++SPYFVT+ +       D  +L+V+KK+ N +++  IL+ 
Sbjct: 178 SKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQ 237

Query: 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGL 328
             +   P++I+AED+E +ALA L+ NKLRG L  AA+KAP FG+R+   L DIA +TGG 
Sbjct: 238 VAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGT 297

Query: 329 VIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAE 383
           VI +E+G  L+ A   +LG A +V ITKD T IV     +  +E RI+ I+   E
Sbjct: 298 VISEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELE 352
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Length = 201 Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Length = 194 Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Length = 145 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query401
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3p9d_D 528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3iyg_B 513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3iyg_H 515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3iyg_G 515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3iyg_E 515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3iyg_D 518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3p9d_E 562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3iyg_Q 512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3iyg_Z 517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 100.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 100.0
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 99.89
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.82
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
Probab=100.00  E-value=3.8e-81  Score=653.90  Aligned_cols=354  Identities=45%  Similarity=0.763  Sum_probs=343.1

Q ss_pred             cceeeecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHh
Q 015737           30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA  109 (401)
Q Consensus        30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~  109 (401)
                      ++|+|.||  .++|+.|++||+.++++|+|||||+||||||++++|+|+|||||+||+|+|+++||+||+||||++++|+
T Consensus         1 ~~k~~~~g--~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~   78 (547)
T 1kp8_A            1 AAKDVKFG--NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVAS   78 (547)
T ss_dssp             CCEEEEEH--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred             CCcccccc--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHH
Confidence            36999999  8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhccccccchh-hhHhhhhhccCCchhHH
Q 015737          110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG  188 (401)
Q Consensus       110 ~qd~~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~l~~va~ts~~~~~~la  188 (401)
                      +||+++||||||++|||++||+++.+++++|+||+.|++||++|.+.++++|+++++|+++. +|.++|++|++++++++
T Consensus        79 ~qd~e~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~e~l~~vA~iS~~~~~~i~  158 (547)
T 1kp8_A           79 KANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVG  158 (547)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCCCSHHHHHHHHHHHTTSCHHHH
T ss_pred             hhccccCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHhccchhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999876 89999999999999999


Q ss_pred             HHHHHHHHhhccCCcEEeeCCCCccceeEEEeceEEeecccCcccccccccceeEeeCceEEEecccCCCHHHHHHHHHH
Q 015737          189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS  268 (401)
Q Consensus       189 ~li~~Av~~v~~~g~I~i~~G~~~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~n~~Ill~d~~I~~~~~i~~~le~  268 (401)
                      ++++||+.+++++|.|++++|++++||+++++|++|+++|.||||++++++|+++++||+|+++|++|++++++++++|+
T Consensus       159 ~liadAv~~V~~dg~I~Ve~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~Is~~~~l~~~le~  238 (547)
T 1kp8_A          159 KLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEA  238 (547)
T ss_dssp             HHHHHHHHHHCTTSEEEEECCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESEECCGGGTHHHHHH
T ss_pred             HHHHHHHHHhCcCCcEEEEeCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCcCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCEEEEecCcchHHHHHHHHhcccCcceEEEEecCCccccccccHHHHHHHhCCeEEecCCCCcccCCCCCCcee
Q 015737          269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT  348 (401)
Q Consensus       269 i~~~g~~lvIi~~~I~~~al~~L~~n~~~g~~~v~aVk~p~~~~~~~~~Le~Ia~~tGa~~i~~~~g~~~~~~~~~~LG~  348 (401)
                      +.+.|+||||++++|+++|+++|+.|+++|.++|+|||+|+||++++++|+|||++|||+++++++|++++++++++||+
T Consensus       239 i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~  318 (547)
T 1kp8_A          239 VAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQ  318 (547)
T ss_dssp             HHGGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEE
T ss_pred             HHhcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEeccccccccHHHHHHHHHHhCCeEecccccCCcccCCHHHCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEc-----------------------------------------------CeEEEEccCCCHHHHHHHHHHHHHH
Q 015737          349 AIKVVITK-----------------------------------------------DSTLIVTDGSTRAAVEKRISEIRSL  381 (401)
Q Consensus       349 ~~~v~v~~-----------------------------------------------~~~tIi~~g~~~~~l~e~~~~l~~~  381 (401)
                      |+.|++++                                               ..|||++||+++..++|++|.++|+
T Consensus       319 a~~v~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DA  398 (547)
T 1kp8_A          319 AKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDA  398 (547)
T ss_dssp             EEEEEECSSCEEEEEECCCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred             eeEEEEccceEEEEcCCCCHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHH
Confidence            99999741                                               4589999999999999999999999


Q ss_pred             HHHH
Q 015737          382 AEVV  385 (401)
Q Consensus       382 l~~~  385 (401)
                      |..+
T Consensus       399 l~~~  402 (547)
T 1kp8_A          399 LHAT  402 (547)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9744
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 401
d1ioka2176 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus de 3e-64
d1sjpa2184 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium 4e-57
d1kida_193 c.8.5.1 (A:) GroEL, A domain {Escherichia coli [Ta 8e-57
d1srva_145 c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus 5e-56
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 5e-46
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 5e-38
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 5e-37
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 6e-30
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 2e-23
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 4e-22
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 4e-21
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 1e-17
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 2e-16
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 6e-13
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 7e-12
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Length = 176 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Paracoccus denitrificans [TaxId: 266]

 Score =  201 bits (513), Expect = 3e-64
 Identities = 81/164 (49%), Positives = 114/164 (69%)

Query: 220 EGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIV 279
           EGM+FDRG+LSPYFVT+  K   E  D  +LL +KK+ + + M  +L+S ++ + P++IV
Sbjct: 1   EGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIV 60

Query: 280 AEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLD 339
           AED+E +ALA L+ NKLRG LK AA+KAP FG+R+   L DIAILTGG VI +++G+ L+
Sbjct: 61  AEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLE 120

Query: 340 KAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAE 383
               ++LG A KV I KD+T IV     +A +E R+S+IR   E
Sbjct: 121 NVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIE 164
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 184 Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Length = 193 Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query401
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 100.0
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 100.0
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 100.0
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 100.0
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 100.0
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 100.0
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 99.97
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.97
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 99.97
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 99.82
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.8
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.78
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.78
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.63
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 99.41
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 99.16
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 99.11
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 99.07
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 98.59
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 98.53
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 98.5
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=100.00  E-value=1.1e-38  Score=302.84  Aligned_cols=220  Identities=23%  Similarity=0.372  Sum_probs=174.7

Q ss_pred             ceeeecCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEEecchHHHhccccccCcccchHHHHHHHHHhc
Q 015737           31 VKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGAR  110 (401)
Q Consensus        31 ~k~i~~g~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmI~~~~g~~~iTnDG~TIlk~i~~~hP~~~~gakll~~~a~~  110 (401)
                      ++...||  +++|..|+.||+.++++|++||||+||+|||+++.|+++|||||+||+++++++||.    |++++++|++
T Consensus         7 ~~~~~~g--~~a~~~~~~a~~~ia~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~----a~~~~~~a~~   80 (258)
T d1q3qa1           7 GTQRYVG--RDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPA----AKMMVEVAKT   80 (258)
T ss_dssp             TCEEEEH--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHH----HHHHHHHHHH
T ss_pred             CCccccC--HHHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEeccHHHHHHHhhhhHHH----HHHHHHHHHH
Confidence            5678888  899999999999999999999999999999999999999999999999999999998    9999999999


Q ss_pred             cccccCCCcchHHHHHHHHHHhhHHHHHcCCChhhHHHHHHHHHHHHHHHHhcccc----ccchh-hhH------hhhhh
Q 015737          111 TNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSR----EVEDH-ELA------DVAAV  179 (401)
Q Consensus       111 qd~~~GDGTTt~vvLa~~LL~~~~~li~~G~~p~~I~~g~~~a~~~~~~~L~~~s~----~v~~~-~l~------~va~t  179 (401)
                      |++++||||||+++|+++||+++.++++.|+||..|++||+.|.+.+++.|++++.    |..+. ++.      +.+..
T Consensus        81 ~~~~~GDGttt~~vLa~~ll~~~~~li~~G~~p~~i~~g~~~a~~~~~~~l~~~~~~~~~~~~g~~ei~~a~~l~~~a~~  160 (258)
T d1q3qa1          81 QDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRAVLPAGGAPEIELAIRLDEYAKQ  160 (258)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccccchhHHhHHHHHhhhHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHHHHHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999999874    33332 222      22222


Q ss_pred             ccCCchhHHHHHHHHHHhhcc-----CCc-----E----EeeCCCCccceeEEEeceEEe---ecccCccccccccccee
Q 015737          180 SAGNDYTVGKMISDALQQVGR-----NGV-----V----TIEKGKCTENSLEIVEGMRFD---RGFLSPYFVTDRQKRTV  242 (401)
Q Consensus       180 s~~~~~~la~li~~Av~~v~~-----~g~-----I----~i~~G~~~~ds~~~i~G~~~~---~~~~~~~~~~~~~~~~~  242 (401)
                      ..+.+....+.+.+|+..+.+     .|.     +    ....+++.+..+.+.+|+.++   ++|.+|||++....+..
T Consensus       161 ~~~~~~~a~~~~a~Al~~Ip~~la~N~G~d~i~~v~~l~~~~~~~~~~~gvdv~~G~~~D~~~~Gii~p~~vk~~~l~~A  240 (258)
T d1q3qa1         161 VGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSA  240 (258)
T ss_dssp             HCHHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHhccchhhhhhhhcCCccceehhhhhhhcccCCCceEEEEECCEEeEchHcCccccHHHHHHHHHHH
Confidence            222234444667777776642     121     1    111234445566788999999   89999998765433333


Q ss_pred             EeeCceEEEecccC
Q 015737          243 EFHDGKLLLVDKKI  256 (401)
Q Consensus       243 ~i~n~~Ill~d~~I  256 (401)
                      ...++.||.+|..|
T Consensus       241 ~e~a~~IL~iD~iI  254 (258)
T d1q3qa1         241 SEAAIMILRIDDVI  254 (258)
T ss_dssp             HHHHHHHHTCCEEE
T ss_pred             HHHhCcceeEccEE
Confidence            33456666666544
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure